Query 023409
Match_columns 282
No_of_seqs 125 out of 736
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 06:18:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 4.7E-51 1.6E-55 386.7 15.9 230 26-280 82-382 (391)
2 1qg8_A Protein (spore coat pol 57.0 27 0.00094 28.7 7.0 108 28-142 1-122 (255)
3 2fy7_A Beta-1,4-galactosyltran 56.8 43 0.0015 29.2 8.4 79 27-127 64-146 (287)
4 2z86_A Chondroitin synthase; G 40.7 2E+02 0.0067 27.3 11.0 86 27-124 374-468 (625)
5 3ckj_A Putative uncharacterize 40.6 78 0.0027 27.6 7.5 114 26-143 46-167 (329)
6 3bcv_A Putative glycosyltransf 35.5 87 0.003 25.2 6.6 97 27-135 4-110 (240)
7 2z86_A Chondroitin synthase; G 32.0 1.9E+02 0.0065 27.4 9.3 99 27-135 92-200 (625)
8 4fix_A UDP-galactofuranosyl tr 31.1 82 0.0028 30.9 6.6 103 25-135 177-294 (657)
9 1iio_A Conserved hypothetical 27.0 14 0.00049 26.5 0.2 20 116-135 60-79 (84)
10 3fxd_A Protein ICMQ; helix bun 19.0 73 0.0025 21.0 2.3 20 94-113 9-28 (57)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=4.7e-51 Score=386.70 Aligned_cols=230 Identities=16% Similarity=0.173 Sum_probs=185.4
Q ss_pred CCCeEEEEEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCC---------CCCCcccceee-CCcccccCcccH
Q 023409 26 RVPKVAFLFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETV---------PQSSVFHGRRI-PSKEVQWGKFSM 94 (282)
Q Consensus 26 ~~~kiAyLila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~---------~~~~vf~~~~i-~~~~v~WG~~Sl 94 (282)
+.|||||||++ ++.+++++|++.+++ +++.||||+|+|++..+ ...+|++ + ++..|.|||+||
T Consensus 82 ~~~kiAflil~h~d~~~l~rll~~ly~---p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v---~~~~~~v~WGg~S~ 155 (391)
T 2gak_A 82 VGFPIAYSIVVHHKIEMLDRLLRAIYM---PQNFYCIHVDRKAEESFLAAVQGIASCFDNVFV---ASQLESVVYASWTR 155 (391)
T ss_dssp HTSCEEEEEEECSCHHHHHHHHHHHCC---TTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEE---CSSCCCCCTTSHHH
T ss_pred cCCCEEEEEEecCCHHHHHHHHHHHhC---CCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEE---eccCcccccCCchH
Confidence 35899999999 888899999999975 56778999999987431 1345543 3 368999999999
Q ss_pred HHHHHHHHHHHHhC-CCCCEEEEecCCCccCCChHHHHHHHh-cCCCCcEEeecCCCCC-CcccccC-------------
Q 023409 95 LEAERRLLANALLD-ITNQRFVLLSESCIPLFNFSTIYNYLI-NSSKAFIEAYDLPGPV-GRGRYNR------------- 158 (282)
Q Consensus 95 V~A~l~ll~~al~~-~~~~~filLSg~d~PL~s~~~i~~~l~-~~~~~fi~~~~~~~~~-~~~Ry~~------------- 158 (282)
|+|+++||+.|+++ .+|+|||||||+||||+|+++|+++|+ ++|+|||++...++.. .|.+|.+
T Consensus 156 v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFIe~~~~~~~~~~R~~~~~~~~~~~l~~~~~~ 235 (391)
T 2gak_A 156 VKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYAVVDGKLTNTGIV 235 (391)
T ss_dssp HHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBCCBEECCGGGSHHHHEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCceeeccCCCcccccceEeeeeccccceeeeccc
Confidence 99999999999985 589999999999999999999999998 5799999998765421 1222211
Q ss_pred -CCCCCCCccccccccceEEeehhhhhh---------------ccccCCcchHHHHhhccc-cc----------ccCCCc
Q 023409 159 -PMRPVIRLEQWRKGSQWFEMDRALALE---------------ASCYADEHYLPTFVSAKF-WK----------RNSNRS 211 (282)
Q Consensus 159 -~~~p~i~~~~~~~GSqW~~Ltr~~~~~---------------~~~~pDE~ffqTlL~~~~-~~----------~i~~~~ 211 (282)
++.|. ..++++|||||+|||++|+| ++|+|||+||||++.+.+ ++ ..++++
T Consensus 236 k~~~P~--~~~~~~GSqW~~LtR~~v~~vl~d~~~~~~~~~~k~t~~pDE~ffqTll~~~~~pg~~~~~~~~~~~~~~~~ 313 (391)
T 2gak_A 236 KAPPPL--KTPLFSGSAYFVVTREYVGYVLENENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAI 313 (391)
T ss_dssp CCCCSC--SSCCEECCSCCEEEHHHHHHHHHCHHHHHHHHHHTTSSSGGGTHHHHHTTSTTSTTCCCSSGGGCBCTTTSS
T ss_pred ccCCcc--ccceecccceeEecHHHHHHHHhCCcHHHHHHHHcCCcCCchhHHHHHhhccCCCCccccccccccccccCc
Confidence 12232 35789999999999999998 799999999999997652 22 234789
Q ss_pred eEEEeCC-------CCCCCCc----------ccccCCCCHHHHHHHhcCCCcccCCccCCCCceEEecCCCCchhHHHHh
Q 023409 212 LTWVDWS-------KGGPHPA----------KFQRRDVTIEFLKRLRSGSHCEYNGKRTNICFLFARKFLPNALDRLLRF 274 (282)
Q Consensus 212 lryidW~-------~~~~~P~----------~l~~~d~~~e~L~~l~~~~~c~~~~~~~~~~~lFARKf~~~~~~~ll~~ 274 (282)
+|||+|. +|++||. +|+.+|+ ..|+++ ++||||||++++++.+++.
T Consensus 314 lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl-----~~l~~s------------~~lFARKF~~~~d~~~l~~ 376 (391)
T 2gak_A 314 ARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDL-----SWMLRQ------------HHLFANKFDMDVDPFAIQC 376 (391)
T ss_dssp SEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGH-----HHHTTS------------CCSEEECCCTTTCHHHHHH
T ss_pred eEEEEecccCCccccCCCCCCCccceecceeeecHHHH-----HHHHhC------------CCceEEccCCccCHHHHHH
Confidence 9999997 3555776 8999997 667764 8999999999999999999
Q ss_pred chhhcC
Q 023409 275 APKVMG 280 (282)
Q Consensus 275 ~~~~~~ 280 (282)
||+.+.
T Consensus 377 l~~~l~ 382 (391)
T 2gak_A 377 LDEHLR 382 (391)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998763
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=57.00 E-value=27 Score=28.70 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=62.2
Q ss_pred CeEEEEEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCC------C-CCCCcccceeeCCc----ccccCcccHH
Q 023409 28 PKVAFLFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNET------V-PQSSVFHGRRIPSK----EVQWGKFSML 95 (282)
Q Consensus 28 ~kiAyLila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~------~-~~~~vf~~~~i~~~----~v~WG~~SlV 95 (282)
|++..+|.+ +....+.+.++.+.++..+.+.|+|--|.+.+.. + ...++-+ +... ...+...+..
T Consensus 1 p~vSViIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~---i~~~~~~~~~~~~n~G~~ 77 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRF---YQSDISGVKERTEKTRYA 77 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEE---EECCCCSHHHHHSSCHHH
T ss_pred CeEEEEEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEE---EecccccccccccccCHH
Confidence 578888989 6677899999999986555667666656543321 1 1112211 1100 0011344555
Q ss_pred HHHHHHHHHHHhCCCCCEEEEecCCCccCCC-hHHHHHHHhc-CCCCcE
Q 023409 96 EAERRLLANALLDITNQRFVLLSESCIPLFN-FSTIYNYLIN-SSKAFI 142 (282)
Q Consensus 96 ~A~l~ll~~al~~~~~~~filLSg~d~PL~s-~~~i~~~l~~-~~~~fi 142 (282)
.|--.+++.| .-+|+++|-..|++-.. .+.+.+.+.. ++...+
T Consensus 78 ~a~N~gi~~a----~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v 122 (255)
T 1qg8_A 78 ALINQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI 122 (255)
T ss_dssp HHHHHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHc----CCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEE
Confidence 5555555554 45899999999987543 3444555543 344444
No 3
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=56.78 E-value=43 Score=29.20 Aligned_cols=79 Identities=20% Similarity=0.155 Sum_probs=50.3
Q ss_pred CCeEEEEEEe-cCcccHHHHHHHhh---hcCCCCeEEEEEeCCCCCCCCCCCCcccceeeCCcccccCcccHHHHHHHHH
Q 023409 27 VPKVAFLFLT-RGAVTLAPLWEKFF---HGHEGLYSIYVHSSPSFNETVPQSSVFHGRRIPSKEVQWGKFSMLEAERRLL 102 (282)
Q Consensus 27 ~~kiAyLila-~~~~~l~~L~~~l~---~~~~~~~~iyIHvD~k~~~~~~~~~vf~~~~i~~~~v~WG~~SlV~A~l~ll 102 (282)
.++++.+|-+ +.+..|.++++.+. ......+.|+|--| +.+ ++|+...|.=.++
T Consensus 64 ~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdd-s~d---------------------~~f~~a~a~N~G~ 121 (287)
T 2fy7_A 64 PHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQ-AGD---------------------TIFNRAKLLNVGF 121 (287)
T ss_dssp SCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-CSS---------------------SCCCHHHHHHHHH
T ss_pred CCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEe-CCC---------------------CccchhhhhhhHH
Confidence 4699999999 66778999999997 33334566654333 211 1112222222234
Q ss_pred HHHHhCCCCCEEEEecCCCccCCCh
Q 023409 103 ANALLDITNQRFVLLSESCIPLFNF 127 (282)
Q Consensus 103 ~~al~~~~~~~filLSg~d~PL~s~ 127 (282)
..|++....+|++++-+.|+|....
T Consensus 122 ~~al~~A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 122 QEALKDYDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp HHHHHHSCCCEEEEECTTEEESBTT
T ss_pred HHHHHhCCCCEEEEECCCcccCCCc
Confidence 4455555789999999999998774
No 4
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=40.73 E-value=2e+02 Score=27.28 Aligned_cols=86 Identities=12% Similarity=0.021 Sum_probs=53.4
Q ss_pred CCeEEEEEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCC--------CCCCcccceeeCCcccccCcccHHHH
Q 023409 27 VPKVAFLFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETV--------PQSSVFHGRRIPSKEVQWGKFSMLEA 97 (282)
Q Consensus 27 ~~kiAyLila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~--------~~~~vf~~~~i~~~~v~WG~~SlV~A 97 (282)
.|++..+|.+ +....+.+.++.+..+...++.|+|--|.+.+... ....+.+ + .-..+ +...|
T Consensus 374 ~~~vsiii~~yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~~---~---~~~n~--G~~~a 445 (625)
T 2z86_A 374 VPLVSIYIPAYNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRF---I---SQKNK--GIGSA 445 (625)
T ss_dssp SCSEEEEEEESSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEE---E---EECCC--CHHHH
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhCCcEEE---E---eCCCC--CHHHH
Confidence 4689999999 66778999999998765556777776665544311 1112211 1 11122 34455
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCCccC
Q 023409 98 ERRLLANALLDITNQRFVLLSESCIPL 124 (282)
Q Consensus 98 ~l~ll~~al~~~~~~~filLSg~d~PL 124 (282)
.-.+++.| .-+|+++|-+.|++-
T Consensus 446 ~n~g~~~a----~g~~i~~ld~D~~~~ 468 (625)
T 2z86_A 446 SNTAVRLC----RGFYIGQLDSDDFLE 468 (625)
T ss_dssp HHHHHHHC----CSSEEEECCTTCEEC
T ss_pred HHHHHHhc----CCCEEEEECCCcccC
Confidence 54555544 458899998888864
No 5
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=40.63 E-value=78 Score=27.62 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=60.7
Q ss_pred CCCeEEEEEEe-cCcccHHHHHHHhhhcCCC-CeEEEEEeCCCCCCCCCCCCcccceeeCCccc---ccCcccHHHHHHH
Q 023409 26 RVPKVAFLFLT-RGAVTLAPLWEKFFHGHEG-LYSIYVHSSPSFNETVPQSSVFHGRRIPSKEV---QWGKFSMLEAERR 100 (282)
Q Consensus 26 ~~~kiAyLila-~~~~~l~~L~~~l~~~~~~-~~~iyIHvD~k~~~~~~~~~vf~~~~i~~~~v---~WG~~SlV~A~l~ 100 (282)
..+++..+|-+ +....+.++++.+.++..+ .+.|+|--|.+.+.......-+..+.+++..+ .-...+...|.-.
T Consensus 46 ~~~~vSViIp~yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~ 125 (329)
T 3ckj_A 46 AGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIRPGKGEALWR 125 (329)
T ss_dssp TTCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTTSCCCCSHHHHHHH
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhhhhhccceeeeccCCCCCCHHHHHHH
Confidence 35789999999 6666799999999875423 36677644444332110000000000111000 1122334466555
Q ss_pred HHHHHHhCCCCCEEEEecCCCccC--CChHHHHHHHh-cCCCCcEE
Q 023409 101 LLANALLDITNQRFVLLSESCIPL--FNFSTIYNYLI-NSSKAFIE 143 (282)
Q Consensus 101 ll~~al~~~~~~~filLSg~d~PL--~s~~~i~~~l~-~~~~~fi~ 143 (282)
+++.| .-+|+++|-+.|..+ .-...+.+.|. +.+...+.
T Consensus 126 g~~~a----~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~ 167 (329)
T 3ckj_A 126 SLAAS----RGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVK 167 (329)
T ss_dssp HHHHC----CCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEE
T ss_pred HHHhC----CCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEE
Confidence 55554 458898888888733 23456666654 44555553
No 6
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=35.49 E-value=87 Score=25.16 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=56.5
Q ss_pred CCeEEEEEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCC--------CCCCcccceeeCCcccccCcccHHHH
Q 023409 27 VPKVAFLFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETV--------PQSSVFHGRRIPSKEVQWGKFSMLEA 97 (282)
Q Consensus 27 ~~kiAyLila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~--------~~~~vf~~~~i~~~~v~WG~~SlV~A 97 (282)
.+++..+|.+ +.+..+.+.++.+.++..+.+.|+|--|.+.+... ...++.+ +. . . ..+...|
T Consensus 4 ~p~vsViIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~---i~--~-~--n~G~~~a 75 (240)
T 3bcv_A 4 IPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKV---IH--K-K--NAGLGMA 75 (240)
T ss_dssp CCSEEEEEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEE---EE--C-C--CCCHHHH
T ss_pred CCcEEEEEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEE---EE--C-C--CCChHHH
Confidence 4689999999 66778999999998865556677765555443210 0122221 21 1 1 2234445
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCCccCCC-hHHHHHHHh
Q 023409 98 ERRLLANALLDITNQRFVLLSESCIPLFN-FSTIYNYLI 135 (282)
Q Consensus 98 ~l~ll~~al~~~~~~~filLSg~d~PL~s-~~~i~~~l~ 135 (282)
-=.+++.| .-+|+++|-+.|++-.. .+.+.+.+.
T Consensus 76 ~N~g~~~a----~g~~i~~lD~Dd~~~~~~l~~l~~~~~ 110 (240)
T 3bcv_A 76 CNSGLDVA----TGEYVAFCDSDDYVDSDMYMTMYNVAQ 110 (240)
T ss_dssp HHHHHHHC----CSSEEEECCTTCCCCTTHHHHHHHHHH
T ss_pred HHHHHHHc----CCCEEEEECCCCcCCHHHHHHHHHHHH
Confidence 44445444 45899999888886433 233344443
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=31.96 E-value=1.9e+02 Score=27.38 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=56.9
Q ss_pred CCeEEEEEEe-cCcccHHHHHHHhhhcCC-CCeEEEEEeCCCCCCC------CC-CCCcccceeeCCcccccCcccHHHH
Q 023409 27 VPKVAFLFLT-RGAVTLAPLWEKFFHGHE-GLYSIYVHSSPSFNET------VP-QSSVFHGRRIPSKEVQWGKFSMLEA 97 (282)
Q Consensus 27 ~~kiAyLila-~~~~~l~~L~~~l~~~~~-~~~~iyIHvD~k~~~~------~~-~~~vf~~~~i~~~~v~WG~~SlV~A 97 (282)
.|++..+|.+ +.+..+.++++.+..... ..+.|+|--|.+.+.. +. ...+.. +. ..-.+.+...|
T Consensus 92 ~p~vsviIp~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~---i~---~~~~~~g~~~a 165 (625)
T 2z86_A 92 IDGLSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKY---VR---QKDYGYQLCAV 165 (625)
T ss_dssp CCCEEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEE---EE---ECCCSCCHHHH
T ss_pred CCcEEEEEecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEE---EE---eCCCCcchhHH
Confidence 4689999999 666679999999987532 2566766666554421 11 111211 11 11223445555
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCCccCCC-hHHHHHHHh
Q 023409 98 ERRLLANALLDITNQRFVLLSESCIPLFN-FSTIYNYLI 135 (282)
Q Consensus 98 ~l~ll~~al~~~~~~~filLSg~d~PL~s-~~~i~~~l~ 135 (282)
.-.+++.| ..+|++++-..+.+-.. .+.+.+.+.
T Consensus 166 ~N~g~~~a----~g~~v~~lD~D~~~~~~~l~~~~~~~~ 200 (625)
T 2z86_A 166 RNLGLRAA----KYNYVAILDCDMAPNPLWVQSYMELLA 200 (625)
T ss_dssp HHHHHHHC----CSSEEEEECTTEEECTTHHHHHHHHHH
T ss_pred HHHHHHhC----CcCEEEEECCCCCCCHHHHHHHHHHHh
Confidence 55555554 56889999888887432 233444444
No 8
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=31.15 E-value=82 Score=30.90 Aligned_cols=103 Identities=8% Similarity=0.008 Sum_probs=60.7
Q ss_pred CCCCeEEEEEEe-cCcccHHHHHHHhhhcCC--CCeEEEEEeCCCCCCC--CC---------CCCcccceeeCCcccccC
Q 023409 25 KRVPKVAFLFLT-RGAVTLAPLWEKFFHGHE--GLYSIYVHSSPSFNET--VP---------QSSVFHGRRIPSKEVQWG 90 (282)
Q Consensus 25 ~~~~kiAyLila-~~~~~l~~L~~~l~~~~~--~~~~iyIHvD~k~~~~--~~---------~~~vf~~~~i~~~~v~WG 90 (282)
++.++|+.+|.+ +.+..+.+.++.|.++.. +...=+|=||..+... .. ..++-+ |. . +
T Consensus 177 ~~~pkVSVVIptYN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~v---I~-~----~ 248 (657)
T 4fix_A 177 PGTANIAVGIPTFNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSI---HD-Q----P 248 (657)
T ss_dssp CSCCCEEEECCBSSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEE---EE-C----C
T ss_pred CCCCeEEEEEEecCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEE---EE-C----C
Confidence 456899999999 777789999999976321 1221245566554321 10 011111 21 1 2
Q ss_pred cccHHHHHHHHHHHHHhCCCCCEEEEecCCCccCCC-hHHHHHHHh
Q 023409 91 KFSMLEAERRLLANALLDITNQRFVLLSESCIPLFN-FSTIYNYLI 135 (282)
Q Consensus 91 ~~SlV~A~l~ll~~al~~~~~~~filLSg~d~PL~s-~~~i~~~l~ 135 (282)
..+...|-=.+++.|....+.||+++|-..+++-.. .+.+.+++.
T Consensus 249 N~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~ 294 (657)
T 4fix_A 249 NLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHR 294 (657)
T ss_dssp CCHHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHH
Confidence 344456777788888765578999999888876522 233444444
No 9
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=27.03 E-value=14 Score=26.54 Aligned_cols=20 Identities=10% Similarity=0.296 Sum_probs=17.4
Q ss_pred EecCCCccCCChHHHHHHHh
Q 023409 116 LLSESCIPLFNFSTIYNYLI 135 (282)
Q Consensus 116 lLSg~d~PL~s~~~i~~~l~ 135 (282)
+|..+|||+++.+++..-+.
T Consensus 60 ll~~~DFP~ksA~~lAd~iv 79 (84)
T 1iio_A 60 VLTADDFPFKSAEEVADTIV 79 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHH
T ss_pred hCCcccCCCCCHHHHHHHHH
Confidence 47789999999999988774
No 10
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=18.96 E-value=73 Score=21.01 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhCCCCCE
Q 023409 94 MLEAERRLLANALLDITNQR 113 (282)
Q Consensus 94 lV~A~l~ll~~al~~~~~~~ 113 (282)
+.+|.|..+.+|++.++|+.
T Consensus 9 q~~aILkaLdeaIe~GPWe~ 28 (57)
T 3fxd_A 9 QKETILKALNDAIEKGPWDK 28 (57)
T ss_dssp HHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHcCCchH
Confidence 57899999999999888863
Done!