BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023411
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 197 bits (500), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 146/222 (65%), Gaps = 4/222 (1%)
Query: 62 NKQVISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
K + P LY Y+ + + L QLR ETA + G+ MQ+SP+QAQ L +L+ + GA
Sbjct: 14 GKGITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGA 73
Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
++ +E+GV+ GYS+LA+AL LP G ++AC++D + +AKKY+++AGV+ K+ ++ G A
Sbjct: 74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA 133
Query: 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVA 240
+L+ L +D F+DA+KR Y Y+E +R GG++VIDNVLWHGKV
Sbjct: 134 LATLEQLTQGKPLPEFDLIFIDADKRNYPRYYE---IGLNLLRRGGLMVIDNVLWHGKVT 190
Query: 241 DQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
+ +A+T ++ FN++L +DERV IS++P+GDGMT+ K+
Sbjct: 191 EVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALKK 232
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 141/217 (64%), Gaps = 5/217 (2%)
Query: 68 VTPPLYDYILR-NVREPEILRQLREETA-GMRGSQMQVSPDQAQLLAMLVQILGAQRCIE 125
+TP LY Y+L+ ++REP +L +LREET Q +P+QAQLLA+LV++ A++ I+
Sbjct: 11 LTPELYQYLLQVSLREPPLLAELREETTRSFSTYAXQTAPEQAQLLALLVKLXQAKKVID 70
Query: 126 VGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185
+G +TGYS++A L LP+ G L+ C+ D +S +AK+Y+E+AG+S K+ ++ A D+L
Sbjct: 71 IGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLA 130
Query: 186 ALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVADQMVN 245
LI G+A YD ++DA+K Y+E +R GG+I +DNVL G+VAD+
Sbjct: 131 ELIHAGQAWQYDLIYIDADKANTDLYYE---ESLKLLREGGLIAVDNVLRRGQVADEENQ 187
Query: 246 DAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
IR FN+ + +DERV ++PIGDG+T+ +K+
Sbjct: 188 SENNQLIRLFNQKVYKDERVDXILIPIGDGLTLARKK 224
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 131/216 (60%), Gaps = 4/216 (1%)
Query: 66 ISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCI 124
+S+TP LY Y+L ++RE L LR+ET+ M + MQV+P+QAQ + ML+++ A++ +
Sbjct: 6 LSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVL 65
Query: 125 EVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184
E+G +TGYS+LA++L LP+ G ++ C+ + + A Y+ A HK+K++ G A D+L
Sbjct: 66 ELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL 125
Query: 185 KALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVADQMV 244
+L+ G +DF F+DA+K Y Y+E + G+I IDN+ W GKV D
Sbjct: 126 HSLLNEGGEHQFDFIFIDADKTNYLNYYE---LALKLVTPKGLIAIDNIFWDGKVIDPND 182
Query: 245 NDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQ 280
+T I+ N+ + D RV +S++ I DGM + Q
Sbjct: 183 TSGQTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQ 218
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 163 bits (413), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 138/233 (59%), Gaps = 15/233 (6%)
Query: 62 NKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
+++ IS+T L +YI RN VREP+ +LR+ET + + MQ+SP++ Q L +L +I GA
Sbjct: 2 SRKNISLTESLEEYIFRNSVREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGA 61
Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
+R IE+G +TGYSSL A LPE G ++ C+ VA+KY++ G+ +K+ +K G A
Sbjct: 62 KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA 121
Query: 181 ADSLKALILNGEASSY--DFA---------FVDAEKRMYQEYFEXXXXXXXXIRVGGIIV 229
++L+ LI + A S+ DFA F+DA+K Y Y+ + ++
Sbjct: 122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGL---LI 178
Query: 230 IDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
DNVLW G VAD + T+ IR FN+ + D V +S+VPI DG+++ +KR
Sbjct: 179 ADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKR 231
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 126/222 (56%), Gaps = 17/222 (7%)
Query: 72 LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
LY YIL RE E +++LRE TA + M S D+ Q L+ML++++ A+ +E+GV
Sbjct: 29 LYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGV 88
Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
YTGYS LA AL +PE G ++A + + + E+ ++AGV HK+ + G A L +I
Sbjct: 89 YTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI 148
Query: 189 LNGE-ASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVADQMVNDA 247
+ + SYDF FVDA+K Y Y + ++VGG+I DN LW+G V DA
Sbjct: 149 KDEKNHGSYDFIFVDADKDNYLNYHK---RLIDLVKVGGVIGYDNTLWNGSVV--APPDA 203
Query: 248 KTIS----IRNF----NKNLMEDERVSISMVPIGDGMTICQK 281
R+F NK L D R+ I M+P+GDG+TIC++
Sbjct: 204 PLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRR 245
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 124/221 (56%), Gaps = 22/221 (9%)
Query: 75 YILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTG 131
YILR RE L++LRE S M SP QL++ +++++ A++ IEVGV+TG
Sbjct: 23 YILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTG 82
Query: 132 YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL--IL 189
YS L AL +P+ G + A + D + E+ + +AGV HK+ + +D++ AL +L
Sbjct: 83 YSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINF---IESDAMLALDNLL 139
Query: 190 NGEAS--SYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVA------- 240
G+ S SYDF FVDA+K Y +Y E ++VGGI+ DN LW G VA
Sbjct: 140 QGQESEGSYDFGFVDADKPNYIKYHE---RLMKLVKVGGIVAYDNTLWGGTVAQPESEVP 196
Query: 241 DQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
D M + + ++ NK L D R+ I +P+GDG+T C++
Sbjct: 197 DFMKENRE--AVIELNKLLAADPRIEIVHLPLGDGITFCRR 235
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 130/227 (57%), Gaps = 8/227 (3%)
Query: 60 YSNKQVISVTPP----LYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
+ ++ + PP L+ Y+L R++RE LR LR T ++ +QAQLLA L
Sbjct: 5 WRGRREQCLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANL 64
Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
+++ A++ +++G +TGYS+LA+AL LP G +V CE DA+ E+ + + +A HK+
Sbjct: 65 ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKID 124
Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVL 234
++ A ++L L+ GEA ++D A VDA+K Y+E +R GGI+ + VL
Sbjct: 125 LRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYE---RCLQLLRPGGILAVLRVL 181
Query: 235 WHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
W GKV D +RN N+ + D RV IS++P+GDG+T+ K
Sbjct: 182 WRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK 228
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 4/164 (2%)
Query: 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK 162
VSP Q + L +LVQI GA+ +E+G GYS++ +A L G +V E + ++A+
Sbjct: 42 VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARS 101
Query: 163 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXI 222
ERA ++ +V+++ GLA DSL+ I N + +DF F+DA+K+ YFE
Sbjct: 102 NIERANLNDRVEVRTGLALDSLQQ-IENEKYEPFDFIFIDADKQNNPAYFEWALKLS--- 157
Query: 223 RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS 266
R G +I+ DNV+ G+V D ND + IR F + + + RVS
Sbjct: 158 RPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVS 201
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 11/182 (6%)
Query: 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK 162
V+ +Q Q LA+LV++ A+R +E+G GYS++ A LP G L+ E DA +VA++
Sbjct: 47 VAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVARE 106
Query: 163 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXI 222
+ AGV +V ++ G A SL++L GE ++D F+DA+K Y
Sbjct: 107 NLQLAGVDQRVTLREGPALQSLESL---GECPAFDLIFIDADKPNNPHYLRWALRYS--- 160
Query: 223 RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS-ISMVPIG----DGMT 277
R G +I+ DNV+ G+V + D + +R F + + R++ ++ +G DG T
Sbjct: 161 RPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEXXGAEPRLTATALQTVGTKGWDGFT 220
Query: 278 IC 279
+
Sbjct: 221 LA 222
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 170
L L++ R +E+G GYS++ A LPE+ +V+ ERD R E A K+ + G+
Sbjct: 46 LLHLLKXAAPARILEIGTAIGYSAIRXAQALPEA-TIVSIERDERRYEEAHKHVKALGLE 104
Query: 171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVI 230
++++ G A + L L +D F+DA K Y+ +F+ +R GG+I+
Sbjct: 105 SRIELLFGDALQLGEKLELY---PLFDVLFIDAAKGQYRRFFDXYSPX---VRPGGLILS 158
Query: 231 DNVLWHGKVADQMVNDAK----TISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
DNVL+ G VA+ + + I +N+ L+E + + P+GDG+ I KR
Sbjct: 159 DNVLFRGLVAETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIKR 214
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 86/177 (48%), Gaps = 13/177 (7%)
Query: 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV 169
L+ L++ + +E+G GYSS A + + + ER+ ++ AK+
Sbjct: 62 LIKQLIRXNNVKNILEIGTAIGYSSXQFASI-SDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 170 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIV 229
++V+I G A + + N YD F+DA K +++FE ++ G+++
Sbjct: 121 ENQVRIIEGNALEQFE----NVNDKVYDXIFIDAAKAQSKKFFEIYTPL---LKHQGLVI 173
Query: 230 IDNVLWHGKVADQMVNDAKTI-----SIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
DNVL+HG V+D + ++ + ++++N+ L++ + + + I DG+ I K
Sbjct: 174 TDNVLYHGFVSDIGIVRSRNVRQXVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIK 230
>pdb|3DR5|A Chain A, Crystal Structure Of The Q8nrd3_corgl Protein From
Corynebacterium Glutamicum. Northeast Structural
Genomics Consortium Target Cgr117
Length = 221
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 31/193 (16%)
Query: 104 SPDQ--AQLLAMLVQIL---GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE 158
+PD+ QLL L G+ I + G L I L ++ L + ++
Sbjct: 36 APDEXTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQR 95
Query: 159 VAKKYYERAG---------VSHKVKIKHGLAADSLKALILNGEASSYDF-AFVDAEKRMY 208
AK + AG +S + + LA DS + ++ G+ S D A VDA +
Sbjct: 96 QAKALFREAGYSPSRVRFLLSRPLDVXSRLANDSYQ--LVFGQVSPXDLKALVDAAWPL- 152
Query: 209 QEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS 268
+R GG +V+ + L G +ADQ D T + R+ ++ + E ++
Sbjct: 153 -------------LRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVA 199
Query: 269 MVPIGDGMTICQK 281
+P+G G+T+ K
Sbjct: 200 RLPLGAGLTVVTK 212
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1H1D|A Chain A, Catechol O-Methyltransferase
pdb|2CL5|A Chain A, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|2CL5|B Chain B, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|1VID|A Chain A, Catechol O-Methyltransferase
pdb|3HVH|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Methyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVI|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Ethyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|B Chain B, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVK|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3NW9|A Chain A, Rat Comt In Complex With A Methylpurin-Containing
Bisubstrate Inhibitor
pdb|3NWB|A Chain A, Rat Comt In Complex With A Fluorinated
Desoxyribose-Containing Bisubstrate Inhibitor Avoids
Hydroxyl Group
pdb|3S68|A Chain A, Rat Comt In Complex With Sam And Tolcapone At 1.85a,
P3221, Rfree22.0
Length = 221
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
Query: 75 YILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGY 132
Y+ +N + +P+ + + + + M V + Q++ +++ +E+G Y GY
Sbjct: 12 YVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGY 71
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
S++ +A +L L+ E + + ++ AG+ KV I +G + D + L +
Sbjct: 72 SAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 131
Query: 193 ASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHG 237
+ D F+D K Y +R G +++ DNV+ G
Sbjct: 132 VDTLDMVFLDHWKDRYLP-DTLLLEKCGLLRKGTVLLADNVIVPG 175
>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O-
Methyltransferase
pdb|2ZVJ|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With Coumarine-Based Inhibitor
pdb|2ZTH|A Chain A, Crystal Structure Of Holo Form Of Rat Catechol-O-
Methyltransferase
pdb|3A7D|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With New Bi-Substrate Type Inhibitor
Length = 223
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
Query: 75 YILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGY 132
Y+ +N + +P+ + + + + M V + Q++ +++ +E+G Y GY
Sbjct: 14 YVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGY 73
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
S++ +A +L L+ E + + ++ AG+ KV I +G + D + L +
Sbjct: 74 SAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 133
Query: 193 ASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHG 237
+ D F+D K Y +R G +++ DNV+ G
Sbjct: 134 VDTLDMVFLDHWKDRYLP-DTLLLEKCGLLRKGTVLLADNVIVPG 177
>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3OE5|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Pyridylsulfanyl-Containing Inhibitor -
Humanized Form
pdb|3OZR|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Bisubstrate Inhibitor, No Substituent In
The Adenine Site - Humanized Form
pdb|3OZS|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Trifluoromethyl-Imidazolyl-Containing
Inhibitor - Humanized Form
pdb|3OZT|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, 4- Oxo-Pyridinyl-Containing Inhibitor -
Humanized Form
pdb|3NWE|A Chain A, Rat Comt In Complex With A Methylated Desoxyribose
Bisubstrate- Containing Inhibitor Avoids Hydroxyl Group
pdb|3R6T|A Chain A, Rat Catechol O-Methyltransferase In Complex With The
Bisubstrate Inhibitor
4'-Fluoro-4,5-Dihydroxy-Biphenyl-3-Carboxylic Acid
{(E)-3-
[(2s,4r,
5r)-4-Hydroxy-5-(6-Methyl-Purin-9-Yl)-Tetrahydro-Furan-
2-Yl]- Allyl}-Amide
pdb|3U81|A Chain A, Crystal Structure Of A Sah-Bound Semi-Holo Form Of Rat
Catechol-O- Methyltransferase
Length = 221
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
Query: 75 YILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGY 132
Y+ +N + +P+ + + + + M V + Q++ +++ +E+G Y GY
Sbjct: 12 YVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGY 71
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
S++ +A +L L+ E + + ++ AG+ KV I +G + D + L +
Sbjct: 72 SAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 131
Query: 193 ASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHG 237
+ D F+D K Y +R G +++ DNV+ G
Sbjct: 132 VDTLDMVFLDHWKDRYLP-DTLLLEKCGLLRKGTVLLADNVIVPG 175
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 104 SPDQAQLLAMLVQILG---AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
+ Q L+A+ ++ +G R +E+G TGY++ ++ V+ E G +V+ E + E+A
Sbjct: 57 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIA 116
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201
K+ ER G+ + + + D + E S YD FV
Sbjct: 117 KRNVERLGIENVIFV----CGDGYYGV---PEFSPYDVIFV 150
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
M V + +++ ++Q +E+G Y GYS++ +A +L L+ E + +
Sbjct: 39 MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXX 220
++ + AGV KV + G + D + L + + D F+D K Y
Sbjct: 99 QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLP-DTLLLEECG 157
Query: 221 XIRVGGIIVIDNVLWHG 237
+R G +++ DNV+ G
Sbjct: 158 LLRKGTVLLADNVICPG 174
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
M V + +++ ++Q +E+G Y GYS++ +A +L L+ E + +
Sbjct: 42 MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 101
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXX 220
++ + AGV KV + G + D + L + + D F+D K Y
Sbjct: 102 QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLP-DTLLLEECG 160
Query: 221 XIRVGGIIVIDNVLWHG 237
+R G +++ DNV+ G
Sbjct: 161 LLRKGTVLLADNVICPG 177
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
M V + +++ ++Q +E+G Y GYS++ +A +L L+ E + +
Sbjct: 39 MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXX 220
++ + AG+ KV + G + D + L + + D F+D K Y
Sbjct: 99 QRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLP-DTLLLEECG 157
Query: 221 XIRVGGIIVIDNVLWHG 237
+R G +++ DNV+ G
Sbjct: 158 LLRKGTVLLADNVICPG 174
>pdb|3C3P|A Chain A, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
pdb|3C3P|B Chain B, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
pdb|3C3P|C Chain C, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
Length = 210
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 10/171 (5%)
Query: 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167
+LL +L +I Q + G G +S A + S +V + D ++E A++
Sbjct: 45 GRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVXIDPDRDNVEHARRXLHDN 104
Query: 168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGI 227
G+ +V+++ G L + D F D + + E +
Sbjct: 105 GLIDRVELQVG------DPLGIAAGQRDIDILFXDCDVFNGADVLERXNRCLAK---NAL 155
Query: 228 IVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTI 278
++ N L G VA+ D +T ++R FN +L ++VP+G+G+ +
Sbjct: 156 LIAVNALRRGSVAESH-EDPETAALREFNHHLSRRRDFFTTIVPVGNGVLL 205
>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|B Chain B, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|C Chain C, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
Length = 282
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
G + ++G TG ++ +++ + A + ++++E+A+K ER GVS + ++ G
Sbjct: 121 GIKTVADIG--TGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG 178
>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk
pdb|1NV8|B Chain B, N5-Glutamine Methyltransferase, Hemk
pdb|1NV9|A Chain A, Hemk, Apo Structure
Length = 284
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
G + ++G TG ++ +++ + A + ++++E+A+K ER GVS + ++ G
Sbjct: 123 GIKTVADIG--TGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG 180
>pdb|2DDM|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDM|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDO|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDO|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDW|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
pdb|2DDW|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
Length = 283
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 77 LRNVREPEILRQLREETAGMRGSQMQVS----------PDQAQLLAMLVQILGAQRCIEV 126
LR ++E + LRQLR T G G+ Q+ D LL M+ ++G I+
Sbjct: 77 LRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGD---IDS 133
Query: 127 GVY 129
G+Y
Sbjct: 134 GIY 136
>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
pdb|1VQ1|B Chain B, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
Length = 294
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
G + ++G TG ++ +++ + A + ++++E+A+K ER GVS + ++ G
Sbjct: 133 GIKTVADIG--TGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG 190
>pdb|3G5K|A Chain A, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
pdb|3G5K|B Chain B, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
pdb|3G5K|C Chain C, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
pdb|3G5K|D Chain D, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
pdb|3G5P|A Chain A, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
pdb|3G5P|B Chain B, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
pdb|3G5P|C Chain C, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
pdb|3G5P|D Chain D, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
Length = 183
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 74 DYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV-YTGY 132
D +LR V P E A + G ++Q +L LVQ++ +RC+ + G
Sbjct: 12 DPVLRGVAAPV-------ERAQLGGPELQ------RLTQRLVQVMRRRRCVGLSAPQLGV 58
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI 175
+AL LPE+ C C R+L + + R V+ +++
Sbjct: 59 PRQVLALELPEALCR-ECPPRQRALRQMEPFPLRVFVNPSLRV 100
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 9/113 (7%)
Query: 91 EETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVAC 150
+E + Q +P ++ + + +EVG +G+++ I+ ++ +
Sbjct: 63 DEPLPIPAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTI 120
Query: 151 ERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 203
ER +E AK+ ERAG VK H + D K + YD V A
Sbjct: 121 ERIPELVEFAKRNLERAG----VKNVHVILGDGSKGF---PPKAPYDVIIVTA 166
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 105 PDQAQLLAMLVQIL----GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
PD L+ ++ L R I+VG +G +++IAL P + A + +L VA
Sbjct: 12 PDTEVLVEEAIRFLKRXPSGTRVIDVGTGSGCIAVSIALACPGV-SVTAVDLSXDALAVA 70
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
++ ER G + AAD ++ LI E
Sbjct: 71 RRNAERFGA-----VVDWAAADGIEWLIERAE 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,059,649
Number of Sequences: 62578
Number of extensions: 247903
Number of successful extensions: 592
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 32
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)