Query 023411
Match_columns 282
No_of_seqs 308 out of 2945
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:50:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02476 O-methyltransferase 100.0 1.1E-43 2.5E-48 309.9 27.2 272 1-282 1-278 (278)
2 PF01596 Methyltransf_3: O-met 100.0 1.5E-40 3.2E-45 280.1 22.3 200 80-282 5-205 (205)
3 PLN02589 caffeoyl-CoA O-methyl 100.0 4.7E-38 1E-42 271.5 26.6 214 66-282 23-246 (247)
4 KOG1663 O-methyltransferase [S 100.0 2.7E-38 5.9E-43 263.0 22.9 216 64-282 13-237 (237)
5 COG4122 Predicted O-methyltran 100.0 9.5E-37 2E-41 256.8 23.9 207 67-282 7-218 (219)
6 PLN02781 Probable caffeoyl-CoA 100.0 2.6E-36 5.7E-41 260.4 26.7 213 67-282 11-233 (234)
7 COG2230 Cfa Cyclopropane fatty 99.8 2.5E-18 5.4E-23 149.9 10.5 162 47-237 14-181 (283)
8 PF12847 Methyltransf_18: Meth 99.7 1.6E-17 3.5E-22 126.8 10.2 104 119-232 1-111 (112)
9 PF02353 CMAS: Mycolic acid cy 99.7 9.8E-18 2.1E-22 147.6 9.5 162 48-238 5-172 (273)
10 COG2242 CobL Precorrin-6B meth 99.7 4.3E-16 9.3E-21 127.2 16.5 122 101-234 16-137 (187)
11 PRK04457 spermidine synthase; 99.7 3.4E-15 7.3E-20 131.1 18.1 110 113-231 60-176 (262)
12 PRK00377 cbiT cobalt-precorrin 99.7 2.1E-15 4.6E-20 127.1 15.5 113 113-233 34-146 (198)
13 PRK08287 cobalt-precorrin-6Y C 99.7 4.1E-15 8.9E-20 124.2 16.9 119 103-234 15-133 (187)
14 TIGR02469 CbiT precorrin-6Y C5 99.7 2.4E-15 5.3E-20 116.4 13.8 109 113-231 13-121 (124)
15 COG2226 UbiE Methylase involve 99.7 7.7E-16 1.7E-20 131.9 10.6 113 114-237 46-161 (238)
16 PRK13944 protein-L-isoaspartat 99.6 2.1E-15 4.4E-20 127.9 12.8 116 105-232 58-173 (205)
17 TIGR00080 pimt protein-L-isoas 99.6 3.3E-15 7.1E-20 127.6 13.6 116 103-231 61-176 (215)
18 TIGR00138 gidB 16S rRNA methyl 99.6 8.3E-15 1.8E-19 121.7 15.1 101 118-231 41-141 (181)
19 PF01209 Ubie_methyltran: ubiE 99.6 6.8E-16 1.5E-20 133.0 8.8 117 111-237 39-158 (233)
20 PRK13942 protein-L-isoaspartat 99.6 3.3E-15 7.1E-20 127.3 12.9 118 101-231 58-175 (212)
21 COG2519 GCD14 tRNA(1-methylade 99.6 5.4E-15 1.2E-19 125.9 13.1 137 68-233 60-196 (256)
22 PRK00107 gidB 16S rRNA methylt 99.6 6.5E-15 1.4E-19 122.8 13.1 100 119-231 45-144 (187)
23 PRK07402 precorrin-6B methylas 99.6 3.2E-14 6.9E-19 119.7 16.4 123 100-233 21-143 (196)
24 PF13847 Methyltransf_31: Meth 99.6 3.2E-15 7E-20 120.6 9.7 108 118-234 2-112 (152)
25 PLN03075 nicotianamine synthas 99.6 9.1E-15 2E-19 128.9 12.4 119 104-232 109-233 (296)
26 PF05175 MTS: Methyltransferas 99.6 2E-14 4.4E-19 118.3 12.2 109 110-230 22-138 (170)
27 TIGR02752 MenG_heptapren 2-hep 99.6 1.7E-14 3.6E-19 124.3 12.1 113 111-233 37-152 (231)
28 COG2518 Pcm Protein-L-isoaspar 99.6 1.7E-14 3.8E-19 120.3 11.4 118 98-231 51-168 (209)
29 PRK00121 trmB tRNA (guanine-N( 99.6 1.5E-14 3.3E-19 122.3 11.1 122 100-231 23-155 (202)
30 PF08704 GCD14: tRNA methyltra 99.6 3.1E-14 6.7E-19 123.1 13.1 128 96-231 17-145 (247)
31 PLN02233 ubiquinone biosynthes 99.6 1.8E-14 4E-19 126.5 11.8 115 113-236 67-186 (261)
32 PRK11036 putative S-adenosyl-L 99.6 3.5E-14 7.5E-19 124.4 13.2 103 118-231 43-148 (255)
33 PF01135 PCMT: Protein-L-isoas 99.6 1.7E-14 3.7E-19 122.2 9.7 116 102-230 55-170 (209)
34 COG4123 Predicted O-methyltran 99.5 4.9E-14 1.1E-18 121.0 11.8 123 106-238 31-174 (248)
35 TIGR03533 L3_gln_methyl protei 99.5 2.1E-13 4.6E-18 121.1 16.1 119 102-231 100-250 (284)
36 PLN02244 tocopherol O-methyltr 99.5 5.4E-14 1.2E-18 128.1 11.2 106 118-234 117-225 (340)
37 COG2227 UbiG 2-polyprenyl-3-me 99.5 3E-14 6.4E-19 120.6 8.5 105 118-236 58-165 (243)
38 PRK11705 cyclopropane fatty ac 99.5 4.9E-14 1.1E-18 130.0 10.8 161 43-236 106-271 (383)
39 PF13659 Methyltransf_26: Meth 99.5 8.8E-14 1.9E-18 106.9 10.5 102 120-230 1-113 (117)
40 PRK14901 16S rRNA methyltransf 99.5 4.5E-13 9.7E-18 125.9 16.7 159 106-281 239-430 (434)
41 PRK10909 rsmD 16S rRNA m(2)G96 99.5 8.7E-13 1.9E-17 111.0 15.7 116 110-234 44-161 (199)
42 PRK00811 spermidine synthase; 99.5 1E-12 2.2E-17 116.7 16.6 105 118-231 75-190 (283)
43 PRK15451 tRNA cmo(5)U34 methyl 99.5 3.5E-13 7.5E-18 117.5 13.4 106 118-234 55-166 (247)
44 PRK11805 N5-glutamine S-adenos 99.5 3.7E-13 8E-18 120.7 13.7 118 103-231 113-262 (307)
45 PRK14903 16S rRNA methyltransf 99.5 9.3E-13 2E-17 123.4 16.9 139 102-257 220-383 (431)
46 PLN02396 hexaprenyldihydroxybe 99.5 2E-13 4.3E-18 122.9 11.8 104 119-234 131-237 (322)
47 PRK00312 pcm protein-L-isoaspa 99.5 3.3E-13 7.2E-18 114.9 12.6 114 102-231 61-174 (212)
48 PRK11207 tellurite resistance 99.5 2.4E-13 5.1E-18 114.6 11.3 101 116-230 27-132 (197)
49 TIGR00091 tRNA (guanine-N(7)-) 99.5 5.2E-13 1.1E-17 112.2 13.2 105 119-231 16-131 (194)
50 PRK14902 16S rRNA methyltransf 99.5 8E-13 1.7E-17 124.6 15.9 124 102-234 233-381 (444)
51 TIGR00740 methyltransferase, p 99.5 7.8E-13 1.7E-17 114.7 14.6 107 119-236 53-165 (239)
52 smart00828 PKS_MT Methyltransf 99.5 1.9E-13 4.1E-18 117.2 10.4 103 121-234 1-106 (224)
53 PRK14904 16S rRNA methyltransf 99.5 1.3E-12 2.7E-17 123.2 16.5 122 102-234 233-379 (445)
54 PRK04266 fibrillarin; Provisio 99.5 1.9E-12 4.2E-17 111.1 16.1 108 115-235 68-178 (226)
55 TIGR00477 tehB tellurite resis 99.5 5.2E-13 1.1E-17 112.3 12.2 102 114-230 25-131 (195)
56 PRK11873 arsM arsenite S-adeno 99.5 3.8E-13 8.2E-18 118.8 11.8 113 115-237 73-188 (272)
57 TIGR00446 nop2p NOL1/NOP2/sun 99.5 1.9E-12 4.2E-17 113.9 15.7 119 105-233 57-200 (264)
58 PRK14103 trans-aconitate 2-met 99.5 1.8E-13 3.9E-18 119.8 9.0 97 116-231 26-125 (255)
59 PRK15068 tRNA mo(5)U34 methylt 99.5 3.9E-13 8.4E-18 121.4 11.3 111 116-238 119-232 (322)
60 PRK01581 speE spermidine synth 99.5 2.3E-12 4.9E-17 116.4 16.1 107 116-231 147-267 (374)
61 TIGR00563 rsmB ribosomal RNA s 99.5 2.3E-12 5E-17 120.9 16.7 158 105-281 224-423 (426)
62 PRK01683 trans-aconitate 2-met 99.5 2.6E-13 5.7E-18 118.8 9.7 99 116-231 28-129 (258)
63 PRK15001 SAM-dependent 23S rib 99.5 7.8E-13 1.7E-17 121.1 13.1 110 111-231 220-339 (378)
64 PF13578 Methyltransf_24: Meth 99.5 6E-14 1.3E-18 106.3 4.6 102 124-233 1-106 (106)
65 TIGR00537 hemK_rel_arch HemK-r 99.5 3.3E-12 7.2E-17 105.9 15.5 108 109-232 9-140 (179)
66 PRK13943 protein-L-isoaspartat 99.5 1.2E-12 2.5E-17 117.8 13.3 115 104-231 65-179 (322)
67 COG1092 Predicted SAM-dependen 99.4 2.5E-12 5.4E-17 117.7 15.4 117 114-238 212-342 (393)
68 PRK15128 23S rRNA m(5)C1962 me 99.4 1.7E-12 3.6E-17 120.2 14.4 110 116-232 217-339 (396)
69 TIGR00536 hemK_fam HemK family 99.4 1.5E-12 3.3E-17 115.7 13.7 121 103-234 94-246 (284)
70 TIGR00406 prmA ribosomal prote 99.4 2.5E-12 5.4E-17 114.6 15.0 104 118-234 158-261 (288)
71 PF08241 Methyltransf_11: Meth 99.4 8.5E-14 1.9E-18 102.3 4.5 92 124-230 1-95 (95)
72 PRK10901 16S rRNA methyltransf 99.4 5.2E-12 1.1E-16 118.5 17.6 121 104-234 229-374 (427)
73 PLN02366 spermidine synthase 99.4 6.1E-12 1.3E-16 112.6 17.0 107 117-231 89-205 (308)
74 PF13649 Methyltransf_25: Meth 99.4 4.8E-13 1.1E-17 100.4 8.4 93 123-226 1-101 (101)
75 TIGR00095 RNA methyltransferas 99.4 6.9E-12 1.5E-16 104.9 15.8 113 117-234 47-161 (189)
76 COG4106 Tam Trans-aconitate me 99.4 2.2E-13 4.8E-18 112.9 6.5 102 115-233 26-130 (257)
77 PRK08317 hypothetical protein; 99.4 3.9E-12 8.3E-17 109.4 14.7 117 112-239 12-131 (241)
78 PRK00517 prmA ribosomal protei 99.4 8.9E-12 1.9E-16 108.8 17.1 98 118-234 118-215 (250)
79 TIGR00417 speE spermidine synt 99.4 9.9E-12 2.1E-16 109.8 16.8 105 118-231 71-185 (270)
80 PTZ00098 phosphoethanolamine N 99.4 1.3E-12 2.7E-17 115.0 11.0 110 113-236 46-160 (263)
81 TIGR00452 methyltransferase, p 99.4 1.3E-12 2.8E-17 117.2 10.9 110 117-238 119-231 (314)
82 PRK11783 rlmL 23S rRNA m(2)G24 99.4 3.4E-12 7.4E-17 126.4 14.9 111 114-234 533-658 (702)
83 PF08242 Methyltransf_12: Meth 99.4 6.6E-14 1.4E-18 104.6 1.5 99 124-228 1-99 (99)
84 PRK14968 putative methyltransf 99.4 5.8E-12 1.2E-16 104.7 13.3 110 109-231 13-147 (188)
85 TIGR02716 C20_methyl_CrtF C-20 99.4 3.2E-12 7E-17 114.8 12.4 115 110-237 140-259 (306)
86 PRK01544 bifunctional N5-gluta 99.4 3E-12 6.4E-17 122.2 12.8 101 120-231 139-268 (506)
87 PF06325 PrmA: Ribosomal prote 99.4 7.1E-12 1.5E-16 111.2 13.8 135 107-272 148-283 (295)
88 TIGR03534 RF_mod_PrmC protein- 99.4 9.6E-12 2.1E-16 108.2 14.2 116 104-231 70-216 (251)
89 TIGR03587 Pse_Me-ase pseudamin 99.4 8.2E-12 1.8E-16 105.7 13.3 105 116-239 40-149 (204)
90 PRK00216 ubiE ubiquinone/menaq 99.4 4E-12 8.6E-17 109.5 11.4 108 117-233 49-159 (239)
91 PRK14121 tRNA (guanine-N(7)-)- 99.4 8.4E-12 1.8E-16 114.1 13.8 104 118-230 121-233 (390)
92 PRK12335 tellurite resistance 99.4 4.6E-12 1E-16 112.8 11.8 98 118-230 119-221 (287)
93 COG2264 PrmA Ribosomal protein 99.4 3E-12 6.4E-17 112.8 10.3 105 118-234 161-265 (300)
94 PF03602 Cons_hypoth95: Conser 99.4 1.2E-11 2.5E-16 102.9 13.4 129 101-234 23-155 (183)
95 PLN02336 phosphoethanolamine N 99.4 3.1E-12 6.6E-17 121.7 11.2 109 115-236 262-373 (475)
96 PF07279 DUF1442: Protein of u 99.4 4.4E-11 9.5E-16 99.7 16.4 155 104-280 26-185 (218)
97 PRK06922 hypothetical protein; 99.4 1E-11 2.2E-16 119.2 13.6 113 112-234 411-539 (677)
98 TIGR01177 conserved hypothetic 99.4 9.3E-12 2E-16 113.0 12.8 117 102-231 165-293 (329)
99 PRK09489 rsmC 16S ribosomal RN 99.4 1.1E-11 2.3E-16 112.8 13.0 111 105-230 183-301 (342)
100 PF03848 TehB: Tellurite resis 99.3 8.5E-12 1.8E-16 103.8 10.9 104 115-233 26-134 (192)
101 PRK14966 unknown domain/N5-glu 99.3 1.8E-11 3.8E-16 112.7 13.7 95 102-204 233-328 (423)
102 PRK14967 putative methyltransf 99.3 2.5E-11 5.4E-16 104.2 13.7 99 118-230 35-157 (223)
103 PRK09328 N5-glutamine S-adenos 99.3 1.7E-11 3.8E-16 108.2 13.1 116 104-231 90-237 (275)
104 TIGR03704 PrmC_rel_meth putati 99.3 2.5E-11 5.4E-16 106.0 13.4 100 120-231 87-215 (251)
105 TIGR02072 BioC biotin biosynth 99.3 7.5E-12 1.6E-16 107.7 9.9 102 119-235 34-138 (240)
106 PRK03522 rumB 23S rRNA methylu 99.3 5E-11 1.1E-15 107.5 15.3 120 99-231 149-273 (315)
107 COG2890 HemK Methylase of poly 99.3 2.3E-11 4.9E-16 107.7 12.8 121 101-234 90-240 (280)
108 PF10672 Methyltrans_SAM: S-ad 99.3 2.1E-11 4.6E-16 107.6 12.4 109 117-233 121-239 (286)
109 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 1.5E-11 3.2E-16 104.8 10.9 106 117-234 37-145 (223)
110 PRK10258 biotin biosynthesis p 99.3 1E-11 2.2E-16 108.4 9.7 104 113-234 36-142 (251)
111 KOG1270 Methyltransferases [Co 99.3 2.4E-12 5.2E-17 109.9 5.3 100 120-234 90-197 (282)
112 PF13489 Methyltransf_23: Meth 99.3 2.1E-11 4.5E-16 98.5 10.3 106 107-235 9-118 (161)
113 PTZ00146 fibrillarin; Provisio 99.3 4.9E-11 1.1E-15 105.0 13.3 109 117-237 130-241 (293)
114 COG2813 RsmC 16S RNA G1207 met 99.3 3.6E-11 7.8E-16 105.5 12.3 115 102-230 142-264 (300)
115 PF05401 NodS: Nodulation prot 99.3 1.2E-11 2.6E-16 102.1 8.4 144 118-280 42-193 (201)
116 PRK11188 rrmJ 23S rRNA methylt 99.3 4.1E-11 8.9E-16 101.8 12.0 99 118-231 50-164 (209)
117 PLN02823 spermine synthase 99.3 3.8E-11 8.2E-16 108.6 12.3 105 118-231 102-219 (336)
118 PRK05134 bifunctional 3-demeth 99.3 7.3E-11 1.6E-15 101.8 13.5 116 105-233 34-152 (233)
119 COG0742 N6-adenine-specific me 99.3 1.8E-10 4E-15 94.8 14.7 130 100-234 23-156 (187)
120 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.8E-11 4E-16 110.7 9.6 100 119-232 113-215 (340)
121 TIGR03438 probable methyltrans 99.3 1E-10 2.3E-15 104.8 14.2 109 119-231 63-176 (301)
122 KOG1540 Ubiquinone biosynthesi 99.3 2.7E-11 5.9E-16 102.9 9.4 105 117-230 98-212 (296)
123 TIGR03840 TMPT_Se_Te thiopurin 99.3 4.4E-11 9.6E-16 101.8 10.7 101 119-233 34-153 (213)
124 PRK13168 rumA 23S rRNA m(5)U19 99.3 1.5E-10 3.1E-15 109.3 15.2 122 100-231 274-399 (443)
125 COG0220 Predicted S-adenosylme 99.3 9.3E-11 2E-15 100.3 12.5 102 121-230 50-162 (227)
126 PF08003 Methyltransf_9: Prote 99.3 4E-11 8.6E-16 105.2 10.2 117 113-238 109-225 (315)
127 TIGR02085 meth_trns_rumB 23S r 99.2 2.1E-10 4.6E-15 105.8 15.5 121 98-231 208-333 (374)
128 PRK03612 spermidine synthase; 99.2 5E-11 1.1E-15 114.3 11.2 107 117-232 295-415 (521)
129 smart00650 rADc Ribosomal RNA 99.2 1E-10 2.2E-15 96.1 11.5 115 116-243 10-124 (169)
130 smart00138 MeTrc Methyltransfe 99.2 1.4E-10 3.1E-15 102.0 12.8 106 119-233 99-243 (264)
131 KOG2904 Predicted methyltransf 99.2 1.1E-10 2.4E-15 100.2 11.4 126 100-234 123-287 (328)
132 PF02390 Methyltransf_4: Putat 99.2 1.4E-10 3.1E-15 97.3 12.0 101 122-230 20-131 (195)
133 TIGR00479 rumA 23S rRNA (uraci 99.2 3.6E-10 7.8E-15 106.3 15.6 122 100-231 269-395 (431)
134 TIGR02021 BchM-ChlM magnesium 99.2 2.2E-10 4.8E-15 97.9 12.8 100 117-231 53-157 (219)
135 PRK11088 rrmA 23S rRNA methylt 99.2 1.2E-10 2.7E-15 102.9 11.5 94 119-231 85-180 (272)
136 TIGR00438 rrmJ cell division p 99.2 2.2E-10 4.7E-15 95.7 12.3 104 113-231 26-145 (188)
137 PLN02336 phosphoethanolamine N 99.2 1E-10 2.2E-15 111.3 11.4 113 111-236 29-146 (475)
138 TIGR01983 UbiG ubiquinone bios 99.2 3.5E-10 7.6E-15 96.8 13.2 103 119-233 45-150 (224)
139 COG0421 SpeE Spermidine syntha 99.2 9E-10 1.9E-14 97.2 15.9 104 119-231 76-189 (282)
140 KOG4300 Predicted methyltransf 99.2 1E-10 2.3E-15 96.5 9.2 102 118-230 75-180 (252)
141 PRK13255 thiopurine S-methyltr 99.2 5.9E-10 1.3E-14 95.3 14.3 99 118-230 36-153 (218)
142 PRK06202 hypothetical protein; 99.2 1.4E-10 3E-15 100.1 10.4 111 111-236 52-170 (232)
143 PRK07580 Mg-protoporphyrin IX 99.2 4.6E-10 1E-14 96.4 13.2 98 118-230 62-164 (230)
144 cd02440 AdoMet_MTases S-adenos 99.2 4.1E-10 8.8E-15 82.8 11.0 99 122-231 1-103 (107)
145 KOG1271 Methyltransferases [Ge 99.2 3.6E-10 7.7E-15 91.6 10.8 108 120-237 68-186 (227)
146 PRK11933 yebU rRNA (cytosine-C 99.1 1.5E-09 3.3E-14 102.2 15.8 126 101-235 93-245 (470)
147 PF04989 CmcI: Cephalosporin h 99.1 2.9E-10 6.4E-15 95.0 9.6 158 102-267 15-185 (206)
148 PRK05031 tRNA (uracil-5-)-meth 99.1 1.8E-09 4E-14 99.1 15.0 125 98-231 182-319 (362)
149 PLN02672 methionine S-methyltr 99.1 1.2E-09 2.5E-14 111.2 14.5 97 102-204 97-212 (1082)
150 PRK05785 hypothetical protein; 99.1 3.2E-10 6.9E-15 97.6 9.0 88 119-226 51-141 (226)
151 COG2521 Predicted archaeal met 99.1 4.4E-10 9.6E-15 94.4 9.1 149 116-282 131-287 (287)
152 PHA03412 putative methyltransf 99.1 2.1E-09 4.6E-14 91.8 13.2 121 101-239 33-173 (241)
153 PRK04338 N(2),N(2)-dimethylgua 99.1 3E-09 6.6E-14 98.1 15.2 100 120-231 58-157 (382)
154 PF01564 Spermine_synth: Sperm 99.1 9.1E-10 2E-14 95.8 10.2 106 118-232 75-191 (246)
155 COG2263 Predicted RNA methylas 99.1 1.4E-08 3E-13 83.2 16.3 87 119-218 45-136 (198)
156 PF10294 Methyltransf_16: Puta 99.1 3.1E-09 6.7E-14 87.7 12.8 112 116-235 42-159 (173)
157 PF02475 Met_10: Met-10+ like- 99.1 1.4E-09 3E-14 91.4 10.8 100 118-229 100-199 (200)
158 KOG2915 tRNA(1-methyladenosine 99.1 1.2E-09 2.6E-14 93.8 10.4 104 97-204 83-186 (314)
159 TIGR02143 trmA_only tRNA (urac 99.0 4.9E-09 1.1E-13 96.0 14.0 125 98-231 173-310 (353)
160 PLN02585 magnesium protoporphy 99.0 5.7E-09 1.2E-13 93.8 13.4 96 119-230 144-248 (315)
161 PTZ00338 dimethyladenosine tra 99.0 9E-09 2E-13 91.8 14.4 97 101-208 18-114 (294)
162 PHA03411 putative methyltransf 99.0 2.2E-09 4.8E-14 93.7 10.2 73 118-204 63-135 (279)
163 TIGR00308 TRM1 tRNA(guanine-26 99.0 8.2E-09 1.8E-13 94.8 14.2 101 121-231 46-146 (374)
164 COG2265 TrmA SAM-dependent met 99.0 7E-09 1.5E-13 96.8 14.0 124 97-231 267-395 (432)
165 PF09445 Methyltransf_15: RNA 99.0 1.2E-09 2.7E-14 88.4 6.7 78 121-204 1-78 (163)
166 COG3963 Phospholipid N-methylt 99.0 7.3E-09 1.6E-13 82.9 10.7 124 98-231 27-155 (194)
167 PF01170 UPF0020: Putative RNA 99.0 8.7E-09 1.9E-13 85.4 11.7 122 101-231 10-150 (179)
168 PF05185 PRMT5: PRMT5 arginine 98.9 1.5E-08 3.3E-13 95.2 13.2 103 120-232 187-297 (448)
169 PF07021 MetW: Methionine bios 98.9 4E-09 8.7E-14 87.0 7.7 133 118-268 12-163 (193)
170 COG4976 Predicted methyltransf 98.9 3E-09 6.5E-14 89.3 6.9 146 118-282 124-286 (287)
171 TIGR02081 metW methionine bios 98.9 5.2E-09 1.1E-13 87.8 8.5 95 119-230 13-107 (194)
172 PF05724 TPMT: Thiopurine S-me 98.9 1.6E-08 3.4E-13 86.4 10.9 128 97-236 16-159 (218)
173 KOG1661 Protein-L-isoaspartate 98.9 1.2E-08 2.6E-13 84.6 9.6 103 117-231 80-192 (237)
174 COG2520 Predicted methyltransf 98.9 2E-08 4.3E-13 90.4 11.8 110 117-238 186-295 (341)
175 KOG3191 Predicted N6-DNA-methy 98.9 6.6E-08 1.4E-12 78.5 13.6 102 120-233 44-169 (209)
176 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.9 9.2E-08 2E-12 85.0 15.8 152 102-272 68-248 (283)
177 PRK14896 ksgA 16S ribosomal RN 98.9 2.8E-08 6.1E-13 87.2 12.3 93 100-206 10-102 (258)
178 PRK11727 23S rRNA mA1618 methy 98.9 2.3E-08 5E-13 89.9 11.9 84 119-205 114-199 (321)
179 COG0144 Sun tRNA and rRNA cyto 98.9 6.3E-08 1.4E-12 88.7 14.9 144 100-258 137-306 (355)
180 KOG2899 Predicted methyltransf 98.9 1.7E-08 3.8E-13 85.4 9.9 111 119-238 58-215 (288)
181 PF00891 Methyltransf_2: O-met 98.9 1.2E-08 2.7E-13 88.4 9.1 107 111-238 92-205 (241)
182 COG1041 Predicted DNA modifica 98.8 2.1E-08 4.5E-13 89.8 10.3 118 101-231 179-309 (347)
183 KOG1499 Protein arginine N-met 98.8 1.5E-08 3.1E-13 90.4 8.8 109 116-233 57-168 (346)
184 PRK00050 16S rRNA m(4)C1402 me 98.8 2.1E-08 4.6E-13 89.1 9.9 83 117-204 17-99 (296)
185 PRK13256 thiopurine S-methyltr 98.8 7.3E-08 1.6E-12 82.4 12.4 134 100-243 25-174 (226)
186 KOG2730 Methylase [General fun 98.8 1.6E-08 3.4E-13 84.4 7.4 100 100-204 73-174 (263)
187 PRK01544 bifunctional N5-gluta 98.8 5.8E-08 1.3E-12 92.9 12.4 103 119-230 347-460 (506)
188 KOG2361 Predicted methyltransf 98.8 8.1E-09 1.7E-13 87.4 5.7 107 121-234 73-185 (264)
189 PRK00274 ksgA 16S ribosomal RN 98.8 4.4E-08 9.5E-13 86.6 10.7 103 101-216 24-126 (272)
190 TIGR00755 ksgA dimethyladenosi 98.8 8.3E-08 1.8E-12 84.0 11.7 97 101-211 11-110 (253)
191 PF05891 Methyltransf_PK: AdoM 98.8 1E-08 2.2E-13 86.2 5.4 138 119-270 55-199 (218)
192 PF06080 DUF938: Protein of un 98.8 5.8E-08 1.2E-12 81.2 9.5 117 122-242 28-152 (204)
193 PRK00536 speE spermidine synth 98.7 1.8E-07 3.9E-12 81.7 11.9 100 116-232 69-171 (262)
194 KOG3010 Methyltransferase [Gen 98.7 2.6E-08 5.6E-13 84.4 5.2 109 110-230 23-135 (261)
195 PF02527 GidB: rRNA small subu 98.7 1.7E-07 3.6E-12 77.9 9.8 96 122-230 51-146 (184)
196 KOG1541 Predicted protein carb 98.7 6.4E-08 1.4E-12 80.9 6.9 96 119-231 50-159 (270)
197 PF05958 tRNA_U5-meth_tr: tRNA 98.6 1.9E-07 4.1E-12 85.5 10.5 115 97-215 171-299 (352)
198 PF12147 Methyltransf_20: Puta 98.6 8.3E-07 1.8E-11 77.5 13.7 123 111-239 127-256 (311)
199 COG0030 KsgA Dimethyladenosine 98.6 7.7E-07 1.7E-11 77.3 13.2 105 101-217 12-117 (259)
200 KOG1500 Protein arginine N-met 98.6 1.5E-07 3.3E-12 83.2 8.4 103 118-230 176-280 (517)
201 PF03291 Pox_MCEL: mRNA cappin 98.6 2.9E-07 6.4E-12 83.3 10.2 107 119-231 62-185 (331)
202 PF06962 rRNA_methylase: Putat 98.6 2.3E-07 4.9E-12 73.1 7.3 112 146-271 1-124 (140)
203 PRK04148 hypothetical protein; 98.6 7.5E-07 1.6E-11 69.8 10.2 93 110-218 7-100 (134)
204 KOG3420 Predicted RNA methylas 98.6 4.4E-07 9.5E-12 71.1 8.6 91 118-218 47-142 (185)
205 KOG2187 tRNA uracil-5-methyltr 98.5 5.2E-07 1.1E-11 84.1 9.7 127 97-231 357-489 (534)
206 KOG0820 Ribosomal RNA adenine 98.5 5.9E-07 1.3E-11 77.5 9.3 87 109-206 48-134 (315)
207 COG0357 GidB Predicted S-adeno 98.5 8E-07 1.7E-11 75.2 9.4 98 120-230 68-166 (215)
208 PF05219 DREV: DREV methyltran 98.5 5.4E-07 1.2E-11 77.7 8.4 148 98-268 68-236 (265)
209 PLN02232 ubiquinone biosynthes 98.5 1.7E-07 3.7E-12 76.3 4.9 78 148-234 1-83 (160)
210 PF03059 NAS: Nicotianamine sy 98.4 1.5E-06 3.3E-11 76.3 9.5 103 120-231 121-229 (276)
211 PF05711 TylF: Macrocin-O-meth 98.4 4.2E-07 9.1E-12 78.7 5.9 134 118-272 73-238 (248)
212 PRK10742 putative methyltransf 98.4 2.1E-06 4.5E-11 74.0 10.0 90 109-206 76-175 (250)
213 COG0293 FtsJ 23S rRNA methylas 98.4 5.6E-06 1.2E-10 69.3 11.6 101 118-233 44-160 (205)
214 COG4262 Predicted spermidine s 98.4 6.3E-06 1.4E-10 73.9 12.0 106 118-232 288-407 (508)
215 PRK11783 rlmL 23S rRNA m(2)G24 98.3 3.9E-06 8.6E-11 83.5 11.8 101 101-205 171-313 (702)
216 PF04816 DUF633: Family of unk 98.3 3.2E-06 6.9E-11 71.5 8.9 75 123-204 1-75 (205)
217 PF01728 FtsJ: FtsJ-like methy 98.3 1.6E-06 3.5E-11 71.8 7.0 98 119-231 23-138 (181)
218 TIGR00478 tly hemolysin TlyA f 98.3 4E-06 8.7E-11 72.0 9.4 94 118-230 74-169 (228)
219 PF02384 N6_Mtase: N-6 DNA Met 98.3 4.2E-06 9.1E-11 75.3 10.0 125 99-230 26-181 (311)
220 PRK10611 chemotaxis methyltran 98.3 3.4E-06 7.3E-11 74.8 8.9 106 119-232 115-262 (287)
221 KOG1975 mRNA cap methyltransfe 98.3 4.4E-06 9.6E-11 73.8 8.8 108 118-231 116-236 (389)
222 PF08123 DOT1: Histone methyla 98.3 8.7E-06 1.9E-10 68.8 10.4 115 114-237 37-163 (205)
223 TIGR00006 S-adenosyl-methyltra 98.3 1.2E-05 2.7E-10 71.7 11.6 84 117-204 18-101 (305)
224 COG3510 CmcI Cephalosporin hyd 98.2 3.7E-05 7.9E-10 63.2 12.9 147 103-258 53-209 (237)
225 TIGR02987 met_A_Alw26 type II 98.2 1.8E-05 3.8E-10 76.4 13.1 84 119-204 31-121 (524)
226 COG0116 Predicted N6-adenine-s 98.2 2.2E-05 4.8E-10 71.5 11.8 120 102-230 174-342 (381)
227 TIGR03439 methyl_EasF probable 98.2 3.4E-05 7.4E-10 69.5 12.9 109 119-230 76-195 (319)
228 COG4076 Predicted RNA methylas 98.2 4.3E-06 9.2E-11 68.5 6.1 99 121-234 34-137 (252)
229 TIGR01444 fkbM_fam methyltrans 98.2 6.9E-06 1.5E-10 65.1 7.0 59 122-182 1-59 (143)
230 COG1352 CheR Methylase of chem 98.1 9.9E-06 2.1E-10 71.1 8.5 105 119-232 96-241 (268)
231 KOG1709 Guanidinoacetate methy 98.1 3.6E-05 7.8E-10 64.4 11.2 109 118-237 100-211 (271)
232 KOG1122 tRNA and rRNA cytosine 98.1 9.4E-06 2E-10 74.1 8.4 110 116-233 238-372 (460)
233 PF13679 Methyltransf_32: Meth 98.1 2.2E-05 4.8E-10 62.4 9.3 80 118-204 24-108 (141)
234 PF00398 RrnaAD: Ribosomal RNA 98.1 2.1E-05 4.5E-10 69.2 9.5 134 100-242 11-144 (262)
235 PF01269 Fibrillarin: Fibrilla 98.1 3.4E-05 7.3E-10 65.2 10.0 106 116-230 70-176 (229)
236 PF01739 CheR: CheR methyltran 98.1 1.9E-06 4.2E-11 72.3 2.1 106 119-233 31-176 (196)
237 KOG3178 Hydroxyindole-O-methyl 97.9 0.00016 3.5E-09 64.9 11.7 97 120-236 178-279 (342)
238 COG2384 Predicted SAM-dependen 97.9 0.00019 4E-09 60.5 11.3 102 119-230 16-118 (226)
239 PF02005 TRM: N2,N2-dimethylgu 97.9 5.6E-05 1.2E-09 69.8 8.8 106 119-233 49-155 (377)
240 KOG1562 Spermidine synthase [A 97.9 0.00019 4E-09 63.0 11.0 149 116-280 118-281 (337)
241 PF05148 Methyltransf_8: Hypot 97.8 4.6E-05 9.9E-10 63.9 6.7 119 108-268 61-181 (219)
242 COG0275 Predicted S-adenosylme 97.8 0.0003 6.4E-09 62.1 11.5 86 116-204 20-105 (314)
243 PF05971 Methyltransf_10: Prot 97.8 6E-05 1.3E-09 67.0 7.3 83 120-206 103-188 (299)
244 COG3897 Predicted methyltransf 97.8 6.9E-05 1.5E-09 61.9 7.1 76 116-204 76-151 (218)
245 KOG3115 Methyltransferase-like 97.8 5.7E-05 1.2E-09 62.7 6.3 107 121-233 62-185 (249)
246 PF04672 Methyltransf_19: S-ad 97.7 0.00043 9.3E-09 60.5 11.0 165 67-235 12-193 (267)
247 PF01795 Methyltransf_5: MraW 97.7 0.00013 2.8E-09 65.2 7.8 87 117-206 18-104 (310)
248 COG0500 SmtA SAM-dependent met 97.7 0.00047 1E-08 53.4 10.1 106 123-238 52-161 (257)
249 PF03141 Methyltransf_29: Puta 97.7 4.4E-05 9.6E-10 71.5 4.5 100 120-234 118-221 (506)
250 PRK11760 putative 23S rRNA C24 97.7 0.00043 9.3E-09 62.5 10.5 100 118-238 210-310 (357)
251 PF01861 DUF43: Protein of unk 97.6 0.0045 9.7E-08 53.2 15.9 102 118-230 43-147 (243)
252 COG1189 Predicted rRNA methyla 97.6 0.00056 1.2E-08 58.4 10.3 98 118-230 78-176 (245)
253 COG1889 NOP1 Fibrillarin-like 97.6 0.00085 1.9E-08 55.8 10.4 103 116-230 73-178 (231)
254 PF09243 Rsm22: Mitochondrial 97.6 0.00076 1.6E-08 59.7 10.6 50 118-167 32-81 (274)
255 KOG3201 Uncharacterized conser 97.6 0.00041 8.8E-09 55.7 7.8 108 118-233 28-141 (201)
256 KOG2940 Predicted methyltransf 97.5 0.00017 3.8E-09 61.0 4.7 98 120-231 73-173 (325)
257 KOG3045 Predicted RNA methylas 97.4 0.00045 9.7E-09 59.6 7.1 97 107-234 168-266 (325)
258 KOG2352 Predicted spermine/spe 97.4 0.00038 8.3E-09 65.0 6.8 117 119-240 295-424 (482)
259 KOG1269 SAM-dependent methyltr 97.4 0.00021 4.6E-09 65.4 4.8 107 117-234 108-217 (364)
260 PF04445 SAM_MT: Putative SAM- 97.4 0.00022 4.7E-09 61.2 4.5 87 110-204 64-160 (234)
261 COG0286 HsdM Type I restrictio 97.3 0.003 6.4E-08 60.5 12.2 137 98-238 165-335 (489)
262 COG1867 TRM1 N2,N2-dimethylgua 97.3 0.0031 6.7E-08 57.2 11.4 103 120-233 53-155 (380)
263 KOG4589 Cell division protein 97.3 0.0026 5.7E-08 52.4 9.7 107 118-238 68-188 (232)
264 PRK01747 mnmC bifunctional tRN 97.3 0.0022 4.8E-08 63.7 11.2 103 121-231 59-205 (662)
265 PHA01634 hypothetical protein 97.2 0.00087 1.9E-08 51.6 6.0 74 119-204 28-101 (156)
266 PF07091 FmrO: Ribosomal RNA m 97.2 0.0015 3.2E-08 56.4 7.9 88 107-204 92-180 (251)
267 KOG1596 Fibrillarin and relate 97.1 0.004 8.6E-08 53.3 9.3 148 116-278 153-305 (317)
268 PF07942 N2227: N2227-like pro 97.1 0.0039 8.5E-08 54.8 9.7 109 120-238 57-209 (270)
269 COG4798 Predicted methyltransf 97.1 0.0011 2.3E-08 54.9 5.3 115 113-238 42-173 (238)
270 KOG1253 tRNA methyltransferase 96.9 0.0012 2.5E-08 61.9 4.3 117 111-233 101-217 (525)
271 KOG3987 Uncharacterized conser 96.9 8.4E-05 1.8E-09 61.9 -2.8 118 98-234 88-209 (288)
272 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.8 0.0016 3.4E-08 56.9 4.7 115 119-235 56-202 (256)
273 COG1064 AdhP Zn-dependent alco 96.7 0.012 2.5E-07 53.4 9.6 99 115-234 162-261 (339)
274 KOG1227 Putative methyltransfe 96.7 0.0017 3.6E-08 57.2 3.8 103 119-234 194-299 (351)
275 KOG1099 SAM-dependent methyltr 96.7 0.01 2.2E-07 50.4 8.3 98 119-231 41-162 (294)
276 KOG1501 Arginine N-methyltrans 96.6 0.0046 9.9E-08 57.2 5.9 59 122-182 69-127 (636)
277 COG1063 Tdh Threonine dehydrog 96.6 0.027 5.9E-07 51.6 11.1 104 118-235 167-272 (350)
278 KOG2198 tRNA cytosine-5-methyl 96.6 0.038 8.2E-07 50.3 11.5 119 114-234 150-298 (375)
279 PF11968 DUF3321: Putative met 96.5 0.0038 8.3E-08 52.7 4.7 94 121-239 53-154 (219)
280 COG4301 Uncharacterized conser 96.5 0.063 1.4E-06 46.3 11.8 113 113-231 72-192 (321)
281 KOG0822 Protein kinase inhibit 96.4 0.0093 2E-07 56.4 7.1 102 120-231 368-477 (649)
282 KOG0024 Sorbitol dehydrogenase 96.4 0.036 7.7E-07 49.6 10.4 110 116-239 166-278 (354)
283 KOG2671 Putative RNA methylase 96.4 0.0042 9.1E-08 55.8 4.5 98 99-204 188-293 (421)
284 COG5459 Predicted rRNA methyla 96.2 0.0047 1E-07 55.6 3.5 106 118-230 112-223 (484)
285 cd00315 Cyt_C5_DNA_methylase C 96.2 0.026 5.5E-07 50.0 8.2 99 122-234 2-113 (275)
286 KOG4058 Uncharacterized conser 96.2 0.029 6.4E-07 44.5 7.4 109 109-230 62-170 (199)
287 PF03141 Methyltransf_29: Puta 96.1 0.019 4.1E-07 54.2 7.0 129 118-281 364-506 (506)
288 cd08283 FDH_like_1 Glutathione 95.8 0.1 2.2E-06 48.3 10.7 108 114-232 179-306 (386)
289 PF11599 AviRa: RRNA methyltra 95.7 0.16 3.5E-06 43.0 10.2 107 119-231 51-213 (246)
290 PF00107 ADH_zinc_N: Zinc-bind 95.6 0.05 1.1E-06 41.8 6.8 91 129-234 1-91 (130)
291 PRK09424 pntA NAD(P) transhydr 95.2 0.26 5.7E-06 47.4 11.4 109 118-237 163-290 (509)
292 KOG2793 Putative N2,N2-dimethy 95.1 0.21 4.6E-06 43.4 9.5 105 119-234 86-201 (248)
293 PF12692 Methyltransf_17: S-ad 95.0 0.18 3.8E-06 40.1 7.9 101 121-235 30-137 (160)
294 COG3129 Predicted SAM-dependen 94.9 0.041 8.8E-07 47.0 4.6 93 119-215 78-173 (292)
295 TIGR00027 mthyl_TIGR00027 meth 94.9 0.67 1.5E-05 40.7 12.4 110 119-234 81-199 (260)
296 PF02254 TrkA_N: TrkA-N domain 94.8 0.094 2E-06 39.6 6.1 88 128-230 4-94 (116)
297 PRK09880 L-idonate 5-dehydroge 94.7 0.26 5.6E-06 44.7 9.8 99 118-233 168-267 (343)
298 PRK13699 putative methylase; P 94.7 0.055 1.2E-06 46.5 5.0 51 173-230 2-70 (227)
299 PF00145 DNA_methylase: C-5 cy 94.6 0.22 4.7E-06 44.6 8.8 119 122-267 2-137 (335)
300 PRK11524 putative methyltransf 94.5 0.086 1.9E-06 46.9 5.9 53 172-231 8-79 (284)
301 cd08254 hydroxyacyl_CoA_DH 6-h 94.5 0.43 9.4E-06 42.6 10.6 100 116-231 162-262 (338)
302 PF05430 Methyltransf_30: S-ad 94.4 0.073 1.6E-06 41.3 4.6 83 172-281 32-123 (124)
303 cd08237 ribitol-5-phosphate_DH 94.4 0.32 7E-06 44.2 9.5 94 118-232 162-256 (341)
304 PF01555 N6_N4_Mtase: DNA meth 94.3 0.13 2.8E-06 43.3 6.4 54 106-162 176-231 (231)
305 PRK11524 putative methyltransf 94.3 0.15 3.2E-06 45.4 6.9 56 108-166 195-252 (284)
306 KOG1331 Predicted methyltransf 94.1 0.056 1.2E-06 47.5 3.6 91 119-230 45-141 (293)
307 KOG1098 Putative SAM-dependent 93.9 0.18 4E-06 48.8 6.9 102 117-237 42-162 (780)
308 COG1565 Uncharacterized conser 93.8 0.28 6.2E-06 44.7 7.7 49 120-168 78-133 (370)
309 TIGR00561 pntA NAD(P) transhyd 93.8 0.38 8.1E-06 46.3 9.0 42 119-162 163-205 (511)
310 PLN03154 putative allyl alcoho 93.7 0.95 2.1E-05 41.3 11.3 101 115-231 154-257 (348)
311 cd08281 liver_ADH_like1 Zinc-d 93.6 0.71 1.5E-05 42.4 10.4 101 116-232 188-290 (371)
312 KOG2651 rRNA adenine N-6-methy 93.6 0.3 6.5E-06 44.7 7.4 53 108-162 142-194 (476)
313 PF05050 Methyltransf_21: Meth 93.5 0.19 4.1E-06 40.1 5.7 44 125-168 1-49 (167)
314 PRK13699 putative methylase; P 93.3 0.32 6.8E-06 41.8 6.9 56 109-167 151-208 (227)
315 TIGR03201 dearomat_had 6-hydro 93.3 0.87 1.9E-05 41.4 10.2 107 116-234 163-274 (349)
316 PF02636 Methyltransf_28: Puta 93.2 0.23 4.9E-06 43.3 6.1 47 120-166 19-72 (252)
317 KOG2360 Proliferation-associat 93.2 0.11 2.4E-06 47.5 4.2 82 101-183 195-276 (413)
318 TIGR03451 mycoS_dep_FDH mycoth 93.2 1.2 2.5E-05 40.7 11.0 103 116-233 173-277 (358)
319 KOG2798 Putative trehalase [Ca 92.9 0.42 9E-06 42.8 7.2 104 121-234 152-298 (369)
320 COG0686 Ald Alanine dehydrogen 92.9 1.1 2.4E-05 40.2 9.7 95 120-230 168-266 (371)
321 COG0677 WecC UDP-N-acetyl-D-ma 92.9 1.2 2.7E-05 41.1 10.3 105 121-238 10-134 (436)
322 cd05188 MDR Medium chain reduc 92.7 1.6 3.4E-05 37.4 10.6 98 118-231 133-231 (271)
323 PTZ00357 methyltransferase; Pr 92.5 0.67 1.5E-05 45.8 8.4 103 122-227 703-830 (1072)
324 PLN02740 Alcohol dehydrogenase 92.3 1.8 3.8E-05 40.0 11.1 101 115-231 194-299 (381)
325 PF03686 UPF0146: Uncharacteri 92.3 0.95 2.1E-05 35.1 7.5 87 112-218 6-93 (127)
326 PF04378 RsmJ: Ribosomal RNA s 92.3 1.7 3.6E-05 37.8 9.9 110 109-230 48-162 (245)
327 cd08294 leukotriene_B4_DH_like 92.2 2.1 4.5E-05 38.1 11.2 100 114-230 138-239 (329)
328 TIGR00675 dcm DNA-methyltransf 92.1 0.71 1.5E-05 41.7 7.9 96 123-234 1-110 (315)
329 TIGR02825 B4_12hDH leukotriene 91.8 3.1 6.7E-05 37.2 11.8 101 114-231 133-236 (325)
330 cd08293 PTGR2 Prostaglandin re 91.8 2.1 4.6E-05 38.5 10.8 94 121-230 156-252 (345)
331 COG3315 O-Methyltransferase in 91.8 1.9 4.1E-05 38.6 10.1 108 120-233 93-210 (297)
332 cd08295 double_bond_reductase_ 91.7 2.9 6.3E-05 37.6 11.6 101 114-230 146-249 (338)
333 COG0270 Dcm Site-specific DNA 91.7 1.2 2.6E-05 40.4 9.0 97 121-234 4-118 (328)
334 PLN02827 Alcohol dehydrogenase 91.6 2.2 4.7E-05 39.4 10.8 102 115-231 189-294 (378)
335 PRK08114 cystathionine beta-ly 91.6 4.8 0.00011 37.6 13.0 133 103-241 60-195 (395)
336 KOG2912 Predicted DNA methylas 91.6 0.32 6.9E-06 43.6 4.8 79 124-204 107-187 (419)
337 PRK10309 galactitol-1-phosphat 91.5 2.1 4.5E-05 38.7 10.5 103 116-233 157-261 (347)
338 PF03721 UDPG_MGDP_dh_N: UDP-g 91.5 4.2 9.2E-05 33.7 11.4 102 122-238 2-126 (185)
339 COG0604 Qor NADPH:quinone redu 91.5 2.9 6.3E-05 37.9 11.2 102 114-231 137-240 (326)
340 KOG2078 tRNA modification enzy 91.4 0.13 2.9E-06 47.6 2.3 65 118-185 248-313 (495)
341 TIGR02818 adh_III_F_hyde S-(hy 91.1 3.7 7.9E-05 37.6 11.6 102 115-232 181-287 (368)
342 COG2961 ComJ Protein involved 91.0 9.9 0.00021 33.1 14.5 118 103-230 73-193 (279)
343 cd08239 THR_DH_like L-threonin 91.0 2.8 6.1E-05 37.6 10.7 100 116-231 160-261 (339)
344 COG1568 Predicted methyltransf 90.8 2.2 4.7E-05 37.7 9.0 78 119-204 152-230 (354)
345 TIGR00518 alaDH alanine dehydr 90.8 1.6 3.5E-05 40.4 8.9 96 119-230 166-265 (370)
346 PF10237 N6-adenineMlase: Prob 90.7 7.1 0.00015 31.7 11.5 111 102-230 6-121 (162)
347 cd08230 glucose_DH Glucose deh 90.6 1.7 3.7E-05 39.5 9.0 95 118-232 171-269 (355)
348 KOG2352 Predicted spermine/spe 90.6 1.1 2.4E-05 42.4 7.7 96 122-230 51-159 (482)
349 PF01053 Cys_Met_Meta_PP: Cys/ 90.5 5 0.00011 37.4 11.9 127 102-237 52-183 (386)
350 TIGR02822 adh_fam_2 zinc-bindi 90.4 4 8.8E-05 36.8 11.2 94 115-233 161-255 (329)
351 COG1255 Uncharacterized protei 90.3 4.2 9.2E-05 31.0 9.1 86 112-217 6-92 (129)
352 KOG3924 Putative protein methy 90.2 5.2 0.00011 37.1 11.3 130 116-258 189-330 (419)
353 cd08285 NADP_ADH NADP(H)-depen 90.1 4.4 9.6E-05 36.6 11.2 105 115-233 162-267 (351)
354 TIGR03366 HpnZ_proposed putati 90.1 5 0.00011 35.1 11.2 100 118-234 119-220 (280)
355 cd08300 alcohol_DH_class_III c 89.8 5.2 0.00011 36.6 11.5 103 115-233 182-289 (368)
356 COG1062 AdhC Zn-dependent alco 89.7 3.7 8.1E-05 37.3 9.9 110 114-238 180-291 (366)
357 PF06859 Bin3: Bicoid-interact 89.6 0.28 6E-06 37.0 2.3 40 195-237 1-49 (110)
358 cd05278 FDH_like Formaldehyde 89.6 3.7 8.1E-05 36.8 10.2 103 115-231 163-266 (347)
359 PF03807 F420_oxidored: NADP o 89.3 0.97 2.1E-05 32.7 5.1 85 123-229 2-91 (96)
360 COG1748 LYS9 Saccharopine dehy 89.2 2.1 4.5E-05 39.8 8.2 83 121-215 2-88 (389)
361 COG1004 Ugd Predicted UDP-gluc 88.9 8.8 0.00019 35.7 11.9 102 122-238 2-126 (414)
362 cd00401 AdoHcyase S-adenosyl-L 88.9 4.2 9.1E-05 38.2 10.1 88 118-232 200-289 (413)
363 TIGR01202 bchC 2-desacetyl-2-h 88.9 2 4.2E-05 38.4 7.8 87 119-232 144-231 (308)
364 cd08238 sorbose_phosphate_red 88.8 4.8 0.0001 37.5 10.6 104 116-230 172-286 (410)
365 cd08301 alcohol_DH_plants Plan 88.8 7.1 0.00015 35.6 11.6 104 115-233 183-290 (369)
366 cd08261 Zn_ADH7 Alcohol dehydr 88.4 7.9 0.00017 34.6 11.5 102 114-230 154-256 (337)
367 cd08231 MDR_TM0436_like Hypoth 88.3 7 0.00015 35.5 11.1 101 119-231 177-279 (361)
368 PF05206 TRM13: Methyltransfer 88.0 2.3 4.9E-05 37.3 7.3 64 118-182 17-84 (259)
369 cd05285 sorbitol_DH Sorbitol d 87.9 6.3 0.00014 35.5 10.6 102 114-230 157-263 (343)
370 PF11312 DUF3115: Protein of u 87.7 2.8 6E-05 37.7 7.7 135 120-259 87-268 (315)
371 cd08277 liver_alcohol_DH_like 87.5 8.7 0.00019 35.1 11.3 102 115-232 180-286 (365)
372 KOG0053 Cystathionine beta-lya 87.5 18 0.00038 33.9 13.0 126 104-237 76-204 (409)
373 TIGR02819 fdhA_non_GSH formald 87.5 13 0.00029 34.5 12.6 107 115-233 181-300 (393)
374 TIGR01324 cysta_beta_ly_B cyst 87.1 18 0.00039 33.5 13.2 127 104-239 49-179 (377)
375 PRK07502 cyclohexadienyl dehyd 86.9 4.3 9.4E-05 36.3 8.8 87 121-228 7-96 (307)
376 PRK09028 cystathionine beta-ly 86.7 17 0.00038 33.9 12.9 121 109-238 65-189 (394)
377 PLN02586 probable cinnamyl alc 86.6 9.6 0.00021 34.8 11.1 95 118-231 182-277 (360)
378 KOG0022 Alcohol dehydrogenase, 86.6 7.4 0.00016 35.2 9.6 110 113-237 186-299 (375)
379 PRK11064 wecC UDP-N-acetyl-D-m 86.5 20 0.00044 33.6 13.3 105 121-238 4-125 (415)
380 PF07015 VirC1: VirC1 protein; 86.4 1.9 4E-05 37.1 5.7 75 129-203 12-91 (231)
381 cd08233 butanediol_DH_like (2R 86.4 10 0.00022 34.2 11.1 102 115-231 168-271 (351)
382 cd08278 benzyl_alcohol_DH Benz 86.4 8.8 0.00019 35.0 10.7 101 115-230 182-283 (365)
383 KOG0821 Predicted ribosomal RN 86.3 2.6 5.6E-05 36.0 6.4 60 119-182 50-109 (326)
384 PRK05786 fabG 3-ketoacyl-(acyl 85.9 18 0.00038 30.4 11.7 82 119-204 4-90 (238)
385 cd08232 idonate-5-DH L-idonate 85.4 6.2 0.00013 35.3 9.1 94 119-230 165-260 (339)
386 KOG0780 Signal recognition par 85.4 11 0.00025 35.0 10.4 112 147-271 134-248 (483)
387 PRK15001 SAM-dependent 23S rib 85.3 7 0.00015 36.3 9.4 92 122-231 47-141 (378)
388 PF01210 NAD_Gly3P_dh_N: NAD-d 85.3 3.3 7.2E-05 33.2 6.5 94 123-230 2-101 (157)
389 PLN02989 cinnamyl-alcohol dehy 85.1 5.7 0.00012 35.4 8.7 79 120-204 5-86 (325)
390 cd05213 NAD_bind_Glutamyl_tRNA 85.0 18 0.0004 32.4 11.8 97 118-234 176-274 (311)
391 KOG0023 Alcohol dehydrogenase, 84.8 14 0.0003 33.5 10.5 98 118-231 180-278 (360)
392 PF07757 AdoMet_MTase: Predict 84.7 0.78 1.7E-05 34.5 2.3 33 119-154 58-90 (112)
393 COG4017 Uncharacterized protei 84.7 8.1 0.00017 32.3 8.3 91 116-236 41-133 (254)
394 PRK05708 2-dehydropantoate 2-r 84.6 3.1 6.7E-05 37.3 6.6 100 122-234 4-107 (305)
395 PRK07582 cystathionine gamma-l 84.3 18 0.00038 33.3 11.7 117 105-234 51-171 (366)
396 cd08255 2-desacetyl-2-hydroxye 84.3 11 0.00023 32.6 9.8 94 115-230 93-188 (277)
397 PRK15057 UDP-glucose 6-dehydro 84.3 6.2 0.00013 36.8 8.6 105 123-238 3-123 (388)
398 cd08286 FDH_like_ADH2 formalde 84.3 16 0.00035 32.7 11.3 101 116-230 163-264 (345)
399 PRK05939 hypothetical protein; 84.2 22 0.00048 33.1 12.3 124 104-237 46-173 (397)
400 PRK15182 Vi polysaccharide bio 84.0 9.9 0.00021 35.9 10.0 103 120-238 6-126 (425)
401 PRK12475 thiamine/molybdopteri 83.9 15 0.00032 33.6 10.7 80 119-204 23-125 (338)
402 PF10354 DUF2431: Domain of un 83.8 7.4 0.00016 31.7 7.9 100 126-231 3-124 (166)
403 TIGR02356 adenyl_thiF thiazole 83.7 16 0.00035 30.6 10.2 80 119-204 20-120 (202)
404 PRK07810 O-succinylhomoserine 83.5 16 0.00034 34.2 11.0 126 103-237 68-197 (403)
405 PRK09422 ethanol-active dehydr 83.4 15 0.00033 32.7 10.7 101 114-230 157-259 (338)
406 PRK08247 cystathionine gamma-s 83.4 36 0.00079 31.2 13.4 121 105-235 52-176 (366)
407 cd05279 Zn_ADH1 Liver alcohol 83.3 17 0.00037 33.1 11.1 102 115-231 179-284 (365)
408 PLN02662 cinnamyl-alcohol dehy 83.1 7.8 0.00017 34.4 8.6 79 120-204 4-85 (322)
409 PRK10669 putative cation:proto 82.9 6.6 0.00014 38.4 8.6 94 121-230 418-513 (558)
410 PRK10458 DNA cytosine methylas 82.9 27 0.00059 33.4 12.4 43 120-164 88-130 (467)
411 PRK03659 glutathione-regulated 82.7 6.4 0.00014 38.9 8.4 94 121-230 401-496 (601)
412 PRK06234 methionine gamma-lyas 82.5 23 0.00049 33.0 11.7 128 104-237 63-193 (400)
413 PRK08945 putative oxoacyl-(acy 82.5 11 0.00024 32.0 9.0 83 118-204 10-101 (247)
414 KOG1201 Hydroxysteroid 17-beta 82.3 17 0.00037 32.5 10.0 82 119-204 37-123 (300)
415 cd00757 ThiF_MoeB_HesA_family 82.3 18 0.00039 30.8 10.2 80 119-204 20-120 (228)
416 cd08291 ETR_like_1 2-enoyl thi 82.3 19 0.00041 32.0 10.8 97 119-231 142-241 (324)
417 PRK09496 trkA potassium transp 82.1 13 0.00027 35.0 10.0 73 122-205 2-75 (453)
418 PF03269 DUF268: Caenorhabditi 82.1 5.1 0.00011 32.5 6.1 100 120-234 2-113 (177)
419 PRK09496 trkA potassium transp 82.0 6.8 0.00015 36.9 8.1 75 120-204 231-306 (453)
420 PRK08324 short chain dehydroge 81.9 16 0.00035 36.6 11.1 82 119-204 421-507 (681)
421 PRK08045 cystathionine gamma-s 81.7 27 0.00058 32.4 11.8 124 105-237 52-179 (386)
422 PRK05967 cystathionine beta-ly 81.6 33 0.00071 32.1 12.3 122 104-234 63-188 (395)
423 cd08263 Zn_ADH10 Alcohol dehyd 81.6 14 0.00031 33.5 9.9 99 117-230 185-285 (367)
424 PF08351 DUF1726: Domain of un 81.6 3.4 7.4E-05 30.1 4.6 72 193-267 9-90 (92)
425 TIGR00692 tdh L-threonine 3-de 81.3 27 0.00059 31.2 11.6 100 117-231 159-260 (340)
426 PLN02494 adenosylhomocysteinas 81.3 28 0.0006 33.3 11.7 88 118-231 252-340 (477)
427 cd08236 sugar_DH NAD(P)-depend 81.3 22 0.00047 31.8 10.9 101 114-230 154-256 (343)
428 COG4121 Uncharacterized conser 81.1 3.6 7.8E-05 35.9 5.3 106 119-230 58-206 (252)
429 PRK03562 glutathione-regulated 81.1 6.4 0.00014 39.1 7.8 72 121-204 401-473 (621)
430 PRK08861 cystathionine gamma-s 81.1 30 0.00066 32.1 11.9 126 104-238 52-181 (388)
431 TIGR00853 pts-lac PTS system, 80.8 11 0.00024 27.6 7.2 67 121-218 4-70 (95)
432 PF02153 PDH: Prephenate dehyd 80.8 2.3 4.9E-05 37.2 4.1 73 134-227 2-74 (258)
433 PRK06249 2-dehydropantoate 2-r 80.6 5.9 0.00013 35.5 6.9 35 193-230 70-104 (313)
434 PRK08306 dipicolinate synthase 80.5 19 0.00042 32.1 10.1 95 119-238 151-246 (296)
435 PRK06940 short chain dehydroge 80.5 22 0.00049 30.9 10.4 79 122-204 4-85 (275)
436 PRK07417 arogenate dehydrogena 80.5 9.9 0.00021 33.5 8.2 87 122-231 2-89 (279)
437 PRK08293 3-hydroxybutyryl-CoA 80.2 20 0.00043 31.7 10.1 95 121-229 4-117 (287)
438 PRK08574 cystathionine gamma-s 80.2 18 0.00039 33.6 10.1 122 105-237 53-179 (385)
439 PRK08251 short chain dehydroge 80.1 18 0.00039 30.6 9.6 83 121-204 3-90 (248)
440 PRK00066 ldh L-lactate dehydro 79.9 46 0.00099 30.0 12.5 77 118-204 4-82 (315)
441 PLN02353 probable UDP-glucose 79.7 26 0.00056 33.6 11.1 104 122-238 3-133 (473)
442 PF12242 Eno-Rase_NADH_b: NAD( 79.7 5.2 0.00011 28.1 4.7 36 118-153 37-73 (78)
443 PF11899 DUF3419: Protein of u 79.6 4.6 9.9E-05 37.5 5.9 51 110-163 26-76 (380)
444 PRK08064 cystathionine beta-ly 79.6 30 0.00064 32.1 11.4 124 104-237 53-180 (390)
445 PRK07671 cystathionine beta-ly 79.5 25 0.00055 32.4 10.9 123 104-236 49-175 (377)
446 cd08234 threonine_DH_like L-th 79.5 23 0.0005 31.4 10.4 100 114-230 154-255 (334)
447 PRK12921 2-dehydropantoate 2-r 79.5 10 0.00022 33.6 8.0 36 194-232 67-103 (305)
448 cd08296 CAD_like Cinnamyl alco 79.2 22 0.00047 31.8 10.1 97 116-230 160-257 (333)
449 COG0569 TrkA K+ transport syst 79.1 14 0.00031 31.5 8.4 75 122-207 2-78 (225)
450 KOG1197 Predicted quinone oxid 79.0 23 0.00051 31.1 9.5 100 116-231 143-244 (336)
451 COG0079 HisC Histidinol-phosph 79.0 53 0.0011 30.2 14.2 102 123-236 77-188 (356)
452 KOG2920 Predicted methyltransf 78.9 1.8 3.9E-05 38.3 2.8 38 118-157 115-152 (282)
453 PRK08248 O-acetylhomoserine am 78.7 25 0.00053 33.3 10.6 124 103-235 62-189 (431)
454 cd08260 Zn_ADH6 Alcohol dehydr 78.7 31 0.00068 30.8 11.1 100 115-230 161-262 (345)
455 PRK07889 enoyl-(acyl carrier p 78.7 36 0.00077 29.2 11.0 81 119-204 6-94 (256)
456 PLN02514 cinnamyl-alcohol dehy 78.7 27 0.00059 31.7 10.7 97 118-233 179-276 (357)
457 cd00614 CGS_like CGS_like: Cys 78.6 34 0.00074 31.3 11.4 123 104-235 39-165 (369)
458 cd01492 Aos1_SUMO Ubiquitin ac 78.4 30 0.00066 28.8 10.0 80 119-205 20-120 (197)
459 PF14740 DUF4471: Domain of un 78.4 3 6.6E-05 37.1 4.1 73 172-259 201-273 (289)
460 PF01262 AlaDh_PNT_C: Alanine 78.3 1.6 3.5E-05 35.4 2.3 42 118-161 18-60 (168)
461 PF04072 LCM: Leucine carboxyl 78.3 14 0.00031 30.2 8.0 84 119-204 78-166 (183)
462 COG0287 TyrA Prephenate dehydr 78.3 10 0.00022 33.6 7.5 87 121-227 4-93 (279)
463 cd08243 quinone_oxidoreductase 78.2 35 0.00076 29.7 11.1 97 116-231 139-237 (320)
464 PRK08655 prephenate dehydrogen 78.2 11 0.00025 35.6 8.2 84 122-226 2-86 (437)
465 PRK07811 cystathionine gamma-s 78.2 25 0.00053 32.6 10.4 122 105-237 61-188 (388)
466 PRK12384 sorbitol-6-phosphate 78.2 22 0.00048 30.3 9.6 81 121-204 3-90 (259)
467 PRK07050 cystathionine beta-ly 78.1 59 0.0013 30.2 13.6 127 103-238 63-193 (394)
468 PRK06522 2-dehydropantoate 2-r 78.1 27 0.00059 30.7 10.3 92 122-229 2-97 (304)
469 TIGR02080 O_succ_thio_ly O-suc 78.0 41 0.00088 31.2 11.8 124 105-237 51-178 (382)
470 PF01408 GFO_IDH_MocA: Oxidore 77.9 20 0.00043 26.6 8.2 93 122-235 2-96 (120)
471 PRK06176 cystathionine gamma-s 77.8 25 0.00055 32.5 10.3 122 104-235 49-174 (380)
472 PRK14106 murD UDP-N-acetylmura 77.8 19 0.00042 33.8 9.7 73 119-205 4-78 (450)
473 PRK07523 gluconate 5-dehydroge 77.8 16 0.00035 31.1 8.6 83 119-204 9-96 (255)
474 PRK07063 short chain dehydroge 77.7 23 0.0005 30.3 9.5 85 119-204 6-95 (260)
475 cd08266 Zn_ADH_like1 Alcohol d 77.7 30 0.00065 30.4 10.6 100 116-231 163-264 (342)
476 PF02826 2-Hacid_dh_C: D-isome 77.6 13 0.00029 30.3 7.5 88 118-229 34-124 (178)
477 PRK07326 short chain dehydroge 77.5 18 0.00038 30.4 8.6 81 120-204 6-91 (237)
478 cd05292 LDH_2 A subgroup of L- 77.4 49 0.0011 29.6 11.8 73 122-204 2-76 (308)
479 PF02558 ApbA: Ketopantoate re 77.4 2.8 6.2E-05 32.9 3.4 92 124-230 2-99 (151)
480 cd08241 QOR1 Quinone oxidoredu 77.3 36 0.00078 29.5 10.9 100 115-230 135-236 (323)
481 cd01488 Uba3_RUB Ubiquitin act 77.1 25 0.00054 31.5 9.5 77 122-204 1-97 (291)
482 cd08290 ETR 2-enoyl thioester 77.1 32 0.0007 30.6 10.6 102 116-230 143-249 (341)
483 COG0541 Ffh Signal recognition 77.0 22 0.00047 33.6 9.3 136 119-271 99-247 (451)
484 PF00899 ThiF: ThiF family; I 77.0 26 0.00057 26.9 8.8 79 121-205 3-102 (135)
485 PRK06460 hypothetical protein; 77.0 53 0.0012 30.3 12.2 104 123-235 63-170 (376)
486 PRK05599 hypothetical protein; 76.9 23 0.0005 30.2 9.3 81 122-204 2-86 (246)
487 PRK07814 short chain dehydroge 76.7 21 0.00045 30.7 9.0 83 119-204 9-96 (263)
488 PLN02256 arogenate dehydrogena 76.7 33 0.00072 30.8 10.4 85 119-226 35-121 (304)
489 PRK08213 gluconate 5-dehydroge 76.7 25 0.00054 30.0 9.5 81 119-204 11-98 (259)
490 PRK06914 short chain dehydroge 76.7 49 0.0011 28.5 16.0 82 120-204 3-90 (280)
491 PRK05854 short chain dehydroge 76.6 29 0.00064 30.9 10.2 85 119-204 13-102 (313)
492 cd05281 TDH Threonine dehydrog 76.5 56 0.0012 29.2 12.1 97 118-230 162-260 (341)
493 PF11899 DUF3419: Protein of u 76.4 7.6 0.00016 36.1 6.3 63 168-238 273-340 (380)
494 PLN02986 cinnamyl-alcohol dehy 76.2 19 0.00041 32.1 8.8 79 120-204 5-86 (322)
495 TIGR01963 PHB_DH 3-hydroxybuty 76.0 23 0.0005 29.9 9.0 79 121-204 2-87 (255)
496 PF06460 NSP13: Coronavirus NS 76.0 10 0.00022 33.2 6.5 90 119-231 61-168 (299)
497 COG1086 Predicted nucleoside-d 76.0 23 0.0005 34.6 9.5 84 117-204 247-334 (588)
498 PRK05476 S-adenosyl-L-homocyst 75.8 23 0.00049 33.5 9.4 86 119-231 211-298 (425)
499 PRK07688 thiamine/molybdopteri 75.8 40 0.00087 30.8 10.8 80 119-204 23-125 (339)
500 cd05286 QOR2 Quinone oxidoredu 75.8 52 0.0011 28.4 11.9 100 115-230 132-233 (320)
No 1
>PLN02476 O-methyltransferase
Probab=100.00 E-value=1.1e-43 Score=309.86 Aligned_cols=272 Identities=74% Similarity=1.120 Sum_probs=232.6
Q ss_pred Ccccccchheeeeeecc------cchhhhhhccchhhhhhcCCCcCCCccCccccccccccccccccccccCCCChhHHH
Q 023411 1 MASSLVANRFAFVLLKT------EKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYD 74 (282)
Q Consensus 1 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 74 (282)
|+..++-||-.|+..++ ++++..-++..|.. ..|..|+.. .+...+++.+|.|.+++..+..+.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~ 73 (278)
T PLN02476 1 MSTGLALNRCSFSVCRTATTLLNRPTVSVCRSLKFSR----RLIGNCSIA---PADPVVVANDDKYGNKQVISLTPRLYD 73 (278)
T ss_pred CcchhhhhhhhhhhhhhhheeecCCccchhhhhHHHH----HhhcCCCCC---CCCceEEecchhhcccCcccchHHHHH
Confidence 44556666666554442 33333333333322 223333222 223567888999999999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCc
Q 023411 75 YILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA 154 (282)
Q Consensus 75 y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~ 154 (282)
|+.+..++++.+.++++++.++....|.+.+.+++++..+++..++++|||||||+|+++++++..++++++|+++|.++
T Consensus 74 Y~~~~~~~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~ 153 (278)
T PLN02476 74 YVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDS 153 (278)
T ss_pred HHHhcCCCCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH
Confidence 99998888999999999998887778999999999999999999999999999999999999999998789999999999
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 155 RSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 155 ~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+.++.|+++++.+|+.++++++.||+.+.++.+..++..++||+||+|+++..|..+++.+.++ |+|||+|++||++
T Consensus 154 e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~l---L~~GGvIV~DNvL 230 (278)
T PLN02476 154 NSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQL---VRVGGVIVMDNVL 230 (278)
T ss_pred HHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHh---cCCCcEEEEecCc
Confidence 9999999999999999999999999999988875444347899999999999999999999999 9999999999999
Q ss_pred CCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411 235 WHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282 (282)
Q Consensus 235 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~ 282 (282)
|+|.+.++...+.++.++++|++.+.++|+++++++|+|||+++++|+
T Consensus 231 ~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 231 WHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred cCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence 999999988777888999999999999999999999999999999996
No 2
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=1.5e-40 Score=280.12 Aligned_cols=200 Identities=45% Similarity=0.784 Sum_probs=184.2
Q ss_pred cCChHHHHHHHHHHHccC-CCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHH
Q 023411 80 VREPEILRQLREETAGMR-GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE 158 (282)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~ 158 (282)
..+++.|.++++.+.+.. .+.|.+++.+++++..+++..++++||||||++|++++++++.+|++++|+++|++++..+
T Consensus 5 ~~~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~ 84 (205)
T PF01596_consen 5 VREPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE 84 (205)
T ss_dssp TCSTHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH
T ss_pred cCCCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH
Confidence 457899999999998765 5578899999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 159 VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 159 ~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
.|+++++.+|+.++|+++.||+.+.++.+...+..++||+||+|+.+.+|..+++.+.++ |+|||+|++||++|+|.
T Consensus 85 ~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~l---l~~ggvii~DN~l~~G~ 161 (205)
T PF01596_consen 85 IARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPL---LRPGGVIIADNVLWRGS 161 (205)
T ss_dssp HHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHH---EEEEEEEEEETTTGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhh---ccCCeEEEEccccccce
Confidence 999999999999999999999999999887655457899999999999999999999999 99999999999999999
Q ss_pred ccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411 239 VADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282 (282)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~ 282 (282)
|.++...+..+.++++|++.+.++|+++++++|+|||++++|||
T Consensus 162 V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 162 VADPDDEDPKTVAIREFNEYIANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp GGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred ecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence 99997777888899999999999999999999999999999997
No 3
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=4.7e-38 Score=271.50 Aligned_cols=214 Identities=40% Similarity=0.697 Sum_probs=192.8
Q ss_pred CCCChhHHHHHHhc---cCChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCC
Q 023411 66 ISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP 142 (282)
Q Consensus 66 ~~~~~~l~~y~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~ 142 (282)
....+.+++|+.++ .++++.+.++++++.++..+.|.+++.+++++..+++..++++|||||+++|+++++++..++
T Consensus 23 ~~~~~~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~ 102 (247)
T PLN02589 23 LLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALP 102 (247)
T ss_pred ccCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCC
Confidence 35568999999774 357889999999998887777889999999999999999999999999999999999999998
Q ss_pred CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC-CCceeEEEEcCCccccHHHHHHHHHhhcC
Q 023411 143 ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE-ASSYDFAFVDAEKRMYQEYFELLLQLLLQ 221 (282)
Q Consensus 143 ~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~-~~~fDlV~id~~~~~~~~~l~~~~~~~~~ 221 (282)
++++++++|.+++..+.|+++++.+|+.++|+++.|++.+.++.+...+. .++||+||+|+++..|..+++.+.++
T Consensus 103 ~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~l--- 179 (247)
T PLN02589 103 EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDL--- 179 (247)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHh---
Confidence 88999999999999999999999999999999999999999988754321 36999999999999999999999999
Q ss_pred CCCCcEEEEeCCCCCCcccCCcCCC-hh-----hHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411 222 IRVGGIIVIDNVLWHGKVADQMVND-AK-----TISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282 (282)
Q Consensus 222 LkpgG~lv~dd~~~~g~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~ 282 (282)
|+|||+|++||++|+|.+.++.... .+ +.++++|++.+.++++++++++|+|||+++++|+
T Consensus 180 l~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 180 VKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred cCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence 9999999999999999998875422 11 2368999999999999999999999999999995
No 4
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.7e-38 Score=262.98 Aligned_cols=216 Identities=53% Similarity=0.894 Sum_probs=203.5
Q ss_pred ccCCCChhHHHHHHhc---cCChHHHHHHHHHHHcc--CCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHH
Q 023411 64 QVISVTPPLYDYILRN---VREPEILRQLREETAGM--RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIA 138 (282)
Q Consensus 64 ~~~~~~~~l~~y~~~~---~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la 138 (282)
+....++..++|+... .++++.+.++++.+..+ +.+.|.+.+++++++..+++...++++||||+.||++++.+|
T Consensus 13 ~~~~~~~~~~~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~A 92 (237)
T KOG1663|consen 13 RLILSDPRLYQYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVA 92 (237)
T ss_pred hcccccchhhhhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHH
Confidence 3566788888999876 57899999999999887 488999999999999999999999999999999999999999
Q ss_pred HHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHh
Q 023411 139 LVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQL 218 (282)
Q Consensus 139 ~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~ 218 (282)
.++|++|+|+++|++++..+.+.+..+.+|+.++|+++++++.+.++++.+.++.+.||++|+|+++.+|..+++.+.++
T Consensus 93 lalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~L 172 (237)
T KOG1663|consen 93 LALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRL 172 (237)
T ss_pred HhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred hcCCCCCcEEEEeCCCCCCcccCCcCCCh-hhHHHH---HHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411 219 LLQIRVGGIIVIDNVLWHGKVADQMVNDA-KTISIR---NFNKNLMEDERVSISMVPIGDGMTICQKR 282 (282)
Q Consensus 219 ~~~LkpgG~lv~dd~~~~g~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~ 282 (282)
+|+||+|++||++|+|.+++|+.... ++..++ +||+.+..||+++++++|+|||+++|+|+
T Consensus 173 ---lr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~~r~~~~~n~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 173 ---LRVGGVIVVDNVLWPGVVADPDVNTPVRGRSIREALNLNKKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred ---cccccEEEEeccccCCcccCcccCCCcchhhhhhhhhhhhHhccCcceeeEeeeccCceeeeccC
Confidence 99999999999999999999877655 788999 99999999999999999999999999986
No 5
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=9.5e-37 Score=256.84 Aligned_cols=207 Identities=39% Similarity=0.685 Sum_probs=183.2
Q ss_pred CCChhHHHHHHhccC--ChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCC
Q 023411 67 SVTPPLYDYILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPES 144 (282)
Q Consensus 67 ~~~~~l~~y~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~ 144 (282)
...+.+.+|+.+... .+..+.++++...+.. .+.+.++++.++..+++..++++|||||++.|+++++||..+|++
T Consensus 7 ~~~~~l~~y~~~~~~~~~~~~~~~~~e~a~~~~--~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~ 84 (219)
T COG4122 7 NMDEDLYDYLEALIPGEPPALLAELEEFARENG--VPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDD 84 (219)
T ss_pred cchHHHHHHHHhhcccCCchHHHHHHHHhHhcC--CCCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCC
Confidence 466889999999874 3556666666665543 333449999999999999999999999999999999999999988
Q ss_pred CEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE-cchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCC
Q 023411 145 GCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIR 223 (282)
Q Consensus 145 ~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lk 223 (282)
+++|+||+++++.+.|+++++++|+.++++++. +|+.+.+.... .++||+||+|+++..|+++++.+.++ |+
T Consensus 85 g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~----~~~fDliFIDadK~~yp~~le~~~~l---Lr 157 (219)
T COG4122 85 GRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLL----DGSFDLVFIDADKADYPEYLERALPL---LR 157 (219)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhcc----CCCccEEEEeCChhhCHHHHHHHHHH---hC
Confidence 999999999999999999999999999999999 59988877521 68999999999999999999999999 99
Q ss_pred CCcEEEEeCCCCCCcccCCcCCChhhH--HHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411 224 VGGIIVIDNVLWHGKVADQMVNDAKTI--SIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282 (282)
Q Consensus 224 pgG~lv~dd~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~ 282 (282)
|||++|+||++|+|.+.++..++..+. +++.|++.+.++|+++.+++|+|||+++++|+
T Consensus 158 ~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDGl~v~~k~ 218 (219)
T COG4122 158 PGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKR 218 (219)
T ss_pred CCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEecCCceEEEeec
Confidence 999999999999999999865554444 59999999999999999999999999999985
No 6
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=2.6e-36 Score=260.43 Aligned_cols=213 Identities=41% Similarity=0.675 Sum_probs=189.8
Q ss_pred CCChhHHHHHHhc---cCChHHHHHHHHHHHccC--CCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHC
Q 023411 67 SVTPPLYDYILRN---VREPEILRQLREETAGMR--GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL 141 (282)
Q Consensus 67 ~~~~~l~~y~~~~---~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~ 141 (282)
..++.+++|+.+. .++++.+.++++++.++. .+.|.+.+.+++++..+++..++++|||||||+|+++++++..+
T Consensus 11 ~~~~~~~~y~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~ 90 (234)
T PLN02781 11 LKSEALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALAL 90 (234)
T ss_pred CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhC
Confidence 4457889999775 367899999999997652 35678899999999999999999999999999999999999998
Q ss_pred CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcC
Q 023411 142 PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQ 221 (282)
Q Consensus 142 ~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~ 221 (282)
+++++++++|+++++++.|+++++.+|+.++++++.+|+.+.++.+...+..++||+||+|+.+..+..+++.+.++
T Consensus 91 ~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~l--- 167 (234)
T PLN02781 91 PEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKL--- 167 (234)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHh---
Confidence 87899999999999999999999999999999999999999888775443346899999999999999999999999
Q ss_pred CCCCcEEEEeCCCCCCcccCCcCCCh-----hhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411 222 IRVGGIIVIDNVLWHGKVADQMVNDA-----KTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282 (282)
Q Consensus 222 LkpgG~lv~dd~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~ 282 (282)
|+|||+|++||++|+|.+.++..... .+.++++|++.+.++|+++++++|+|||+++++|+
T Consensus 168 l~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~ 233 (234)
T PLN02781 168 VKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISIGDGVTLCRRL 233 (234)
T ss_pred cCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEEEeCCccEEEEEe
Confidence 99999999999999999988764221 24689999999999999999999999999999984
No 7
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=2.5e-18 Score=149.85 Aligned_cols=162 Identities=14% Similarity=0.211 Sum_probs=138.4
Q ss_pred cccccccccccccccccccCCCChhHHHHHHhccCChH-HHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEE
Q 023411 47 TTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPE-ILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIE 125 (282)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLE 125 (282)
.....++.+|||.....+.+.+++.+ .|.+..+.+++ .|++.+....++ +...+...++++|||
T Consensus 14 ~~~~~~i~~HYDl~n~fy~l~Ld~~~-~Yscayf~~~~~tL~eAQ~~k~~~--------------~~~kl~L~~G~~lLD 78 (283)
T COG2230 14 RRAAENIQAHYDLSNDFYRLFLDPSM-TYSCAYFEDPDMTLEEAQRAKLDL--------------ILEKLGLKPGMTLLD 78 (283)
T ss_pred cchhhhhhhHhhcchHHHHHhcCCCC-ceeeEEeCCCCCChHHHHHHHHHH--------------HHHhcCCCCCCEEEE
Confidence 34567899999999999999999996 99999877654 577776665443 556667889999999
Q ss_pred EcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC-
Q 023411 126 VGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE- 204 (282)
Q Consensus 126 IG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~- 204 (282)
||||+|..++++|+.. +.+|+|+++|+++.+.+++.+...|++.+++++..|..+. .+.||.|+.-+.
T Consensus 79 iGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---------~e~fDrIvSvgmf 147 (283)
T COG2230 79 IGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---------EEPFDRIVSVGMF 147 (283)
T ss_pred eCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---------ccccceeeehhhH
Confidence 9999999999999987 5899999999999999999999999998899999998765 466999987543
Q ss_pred ----ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411 205 ----KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG 237 (282)
Q Consensus 205 ----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g 237 (282)
.++++.||+.+.++ |+|||.++++.+.-+.
T Consensus 148 Ehvg~~~~~~ff~~~~~~---L~~~G~~llh~I~~~~ 181 (283)
T COG2230 148 EHVGKENYDDFFKKVYAL---LKPGGRMLLHSITGPD 181 (283)
T ss_pred HHhCcccHHHHHHHHHhh---cCCCceEEEEEecCCC
Confidence 66799999999999 9999999999887555
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.74 E-value=1.6e-17 Score=126.76 Aligned_cols=104 Identities=22% Similarity=0.393 Sum_probs=86.2
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
|+.+|||||||+|..+.++++..+ +++|+++|+++++++.+++++...+..++++++++|+ ...... .++||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~-----~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF-----LEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT-----SSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc-----CCCCCE
Confidence 467999999999999999999655 7899999999999999999998888888999999999 322222 478999
Q ss_pred EEEcC-Ccc------ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 199 AFVDA-EKR------MYQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 199 V~id~-~~~------~~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
|++.. ... ....+++.+.+. |+|||+++++.
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~---L~pgG~lvi~~ 111 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRL---LKPGGRLVINT 111 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHH---EEEEEEEEEEE
T ss_pred EEECCCccccccchhHHHHHHHHHHHh---cCCCcEEEEEE
Confidence 99988 322 234457778787 99999999874
No 9
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.73 E-value=9.8e-18 Score=147.64 Aligned_cols=162 Identities=15% Similarity=0.222 Sum_probs=115.9
Q ss_pred ccccccccccccccccccCCCChhHHHHHHhccC-ChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEE
Q 023411 48 TNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEV 126 (282)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEI 126 (282)
....+...|||.....+.+.+++.+ .|.+.... +.+.|++.+....+. +...+...++.+||||
T Consensus 5 ~~~~~i~~hYDl~ndfy~l~Ld~~m-~YS~~~~~~~~~~Le~AQ~~k~~~--------------~~~~~~l~~G~~vLDi 69 (273)
T PF02353_consen 5 QSRENISAHYDLGNDFYRLFLDPTM-KYSCAYFDEGDDTLEEAQERKLDL--------------LCEKLGLKPGDRVLDI 69 (273)
T ss_dssp --HHHHHHHHTS-HHHHTTTS-TT----S----SSTT--HHHHHHHHHHH--------------HHTTTT--TT-EEEEE
T ss_pred hHHHHHHHHcCCcHHHHHHhcCCCC-CCCCeecCCchhhHHHHHHHHHHH--------------HHHHhCCCCCCEEEEe
Confidence 3466788999999999999999985 88887754 456688877776543 4445567889999999
Q ss_pred cccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC--
Q 023411 127 GVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-- 204 (282)
Q Consensus 127 G~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~-- 204 (282)
|||+|..+.++++.. +++|+||++|++..+.+++.++..|+.+++++..+|..+. ..+||.|+.-..
T Consensus 70 GcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~---------~~~fD~IvSi~~~E 138 (273)
T PF02353_consen 70 GCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL---------PGKFDRIVSIEMFE 138 (273)
T ss_dssp S-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------S-SEEEEESEGG
T ss_pred CCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc---------CCCCCEEEEEechh
Confidence 999999999999986 5899999999999999999999999999999999998764 369999986533
Q ss_pred ---ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 205 ---KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 205 ---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
..++..+++.+.++ |+|||.++++.+.....
T Consensus 139 hvg~~~~~~~f~~~~~~---LkpgG~~~lq~i~~~~~ 172 (273)
T PF02353_consen 139 HVGRKNYPAFFRKISRL---LKPGGRLVLQTITHRDP 172 (273)
T ss_dssp GTCGGGHHHHHHHHHHH---SETTEEEEEEEEEE--H
T ss_pred hcChhHHHHHHHHHHHh---cCCCcEEEEEecccccc
Confidence 35678899999999 99999999998865554
No 10
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.72 E-value=4.3e-16 Score=127.24 Aligned_cols=122 Identities=25% Similarity=0.337 Sum_probs=106.7
Q ss_pred CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (282)
Q Consensus 101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (282)
+...++...+....+...++.+++|||||+|..++.++.. .+.+++++||.++++++..++|.++.|++ +++++.|++
T Consensus 16 p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~A 93 (187)
T COG2242 16 PMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDA 93 (187)
T ss_pred CCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccc
Confidence 3456666666667777889999999999999999999954 45899999999999999999999999965 599999999
Q ss_pred hhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 181 ~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
.+.++.+ .++|.||+.+. ......++.+... |||||.||++-+.
T Consensus 94 p~~L~~~------~~~daiFIGGg-~~i~~ile~~~~~---l~~ggrlV~nait 137 (187)
T COG2242 94 PEALPDL------PSPDAIFIGGG-GNIEEILEAAWER---LKPGGRLVANAIT 137 (187)
T ss_pred hHhhcCC------CCCCEEEECCC-CCHHHHHHHHHHH---cCcCCeEEEEeec
Confidence 9988754 48999999999 8888999999999 9999999998664
No 11
>PRK04457 spermidine synthase; Provisional
Probab=99.68 E-value=3.4e-15 Score=131.09 Aligned_cols=110 Identities=20% Similarity=0.253 Sum_probs=92.0
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (282)
Q Consensus 113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~ 192 (282)
.+....++++|||||||+|.++.++++..| +.+++++|+++++++.|++++...+..++++++++|+.+.+...
T Consensus 60 ~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~----- 133 (262)
T PRK04457 60 FLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH----- 133 (262)
T ss_pred HHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC-----
Confidence 333345678999999999999999999886 78999999999999999999876555578999999998887654
Q ss_pred CCceeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 193 ASSYDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 193 ~~~fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
.++||+|++|.... ...++++.+.+. |+|||++++.
T Consensus 134 ~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~---L~pgGvlvin 176 (262)
T PRK04457 134 RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNA---LSSDGIFVVN 176 (262)
T ss_pred CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHh---cCCCcEEEEE
Confidence 47899999986522 136889999998 9999999995
No 12
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.67 E-value=2.1e-15 Score=127.14 Aligned_cols=113 Identities=21% Similarity=0.421 Sum_probs=96.1
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (282)
Q Consensus 113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~ 192 (282)
......++.+|||+|||+|.+++.++...++.++|+++|+++++++.++++++.+++.++++++.+|+.+.++..
T Consensus 34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~----- 108 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI----- 108 (198)
T ss_pred HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc-----
Confidence 334556778999999999999999998776568999999999999999999999987677999999998765543
Q ss_pred CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
.++||.||++........+++.+.++ |+|||.++++.+
T Consensus 109 ~~~~D~V~~~~~~~~~~~~l~~~~~~---LkpgG~lv~~~~ 146 (198)
T PRK00377 109 NEKFDRIFIGGGSEKLKEIISASWEI---IKKGGRIVIDAI 146 (198)
T ss_pred CCCCCEEEECCCcccHHHHHHHHHHH---cCCCcEEEEEee
Confidence 47899999987766777888888888 999999998655
No 13
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.67 E-value=4.1e-15 Score=124.21 Aligned_cols=119 Identities=25% Similarity=0.328 Sum_probs=96.3
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
+.+.....+...+...++.+|||+|||+|..+..+++..+ +++|+++|+++++++.++++++..++. +++++++|...
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~ 92 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI 92 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh
Confidence 3444444444555566788999999999999999998875 689999999999999999999988875 59999998742
Q ss_pred HHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 183 ~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
. + .++||+||++........+++.+.+. |+|||+++++.+.
T Consensus 93 ~---~-----~~~~D~v~~~~~~~~~~~~l~~~~~~---Lk~gG~lv~~~~~ 133 (187)
T PRK08287 93 E---L-----PGKADAIFIGGSGGNLTAIIDWSLAH---LHPGGRLVLTFIL 133 (187)
T ss_pred h---c-----CcCCCEEEECCCccCHHHHHHHHHHh---cCCCeEEEEEEec
Confidence 1 2 46899999988766677788888888 9999999997553
No 14
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.66 E-value=2.4e-15 Score=116.39 Aligned_cols=109 Identities=25% Similarity=0.398 Sum_probs=91.2
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (282)
Q Consensus 113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~ 192 (282)
......+..+|||+|||+|..+..+++..+ +++|+++|+++.+++.++++++..+.. +++++.+|+.+.++..
T Consensus 13 ~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~----- 85 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS----- 85 (124)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh-----
Confidence 333445667999999999999999999887 589999999999999999999988776 5899999876433332
Q ss_pred CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
.++||.|+++........+++.+.+. |+|||.++++
T Consensus 86 ~~~~D~v~~~~~~~~~~~~l~~~~~~---Lk~gG~li~~ 121 (124)
T TIGR02469 86 LPEPDRVFIGGSGGLLQEILEAIWRR---LRPGGRIVLN 121 (124)
T ss_pred cCCCCEEEECCcchhHHHHHHHHHHH---cCCCCEEEEE
Confidence 46899999988777777888889888 9999999986
No 15
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=7.7e-16 Score=131.93 Aligned_cols=113 Identities=19% Similarity=0.261 Sum_probs=94.8
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
.....++.+|||+|||||..++.+++..+ .++|+++|+|+.|++.+++.....+..+ ++++++|+.+. |.- +
T Consensus 46 ~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-Pf~-----D 117 (238)
T COG2226 46 LLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-PFP-----D 117 (238)
T ss_pred hhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-CCC-----C
Confidence 33334789999999999999999999998 8999999999999999999999988887 99999999754 322 7
Q ss_pred CceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411 194 SSYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG 237 (282)
Q Consensus 194 ~~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g 237 (282)
++||+|.+.-.. .+....++++.++ |||||.+++-+...+.
T Consensus 118 ~sFD~vt~~fglrnv~d~~~aL~E~~RV---lKpgG~~~vle~~~p~ 161 (238)
T COG2226 118 NSFDAVTISFGLRNVTDIDKALKEMYRV---LKPGGRLLVLEFSKPD 161 (238)
T ss_pred CccCEEEeeehhhcCCCHHHHHHHHHHh---hcCCeEEEEEEcCCCC
Confidence 999999988664 4566677777777 9999999987776543
No 16
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.65 E-value=2.1e-15 Score=127.91 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 023411 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184 (282)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l 184 (282)
+.....+...+...++.+|||||||+|+.+..+++.+++.++|+++|+++++++.++++++..++.++++++++|+.+.+
T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~ 137 (205)
T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL 137 (205)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC
Confidence 33444444555556778999999999999999999886568999999999999999999999998878999999987644
Q ss_pred HHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 185 ~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
+. .++||.|+++....+.+ +.+.+. |+|||.|++..
T Consensus 138 ~~------~~~fD~Ii~~~~~~~~~---~~l~~~---L~~gG~lvi~~ 173 (205)
T PRK13944 138 EK------HAPFDAIIVTAAASTIP---SALVRQ---LKDGGVLVIPV 173 (205)
T ss_pred cc------CCCccEEEEccCcchhh---HHHHHh---cCcCcEEEEEE
Confidence 32 46899999998765443 456677 99999998853
No 17
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.64 E-value=3.3e-15 Score=127.58 Aligned_cols=116 Identities=22% Similarity=0.414 Sum_probs=95.4
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
..|.....+...+...++.+|||||||+|+.+..+++..++.++|+++|+++++++.|+++++..++. +++++++|+.+
T Consensus 61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~ 139 (215)
T TIGR00080 61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQ 139 (215)
T ss_pred chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCccc
Confidence 45555566666777888999999999999999999998765688999999999999999999999885 59999999876
Q ss_pred HHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 183 ~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
..+. ..+||+|++++...... +.+.+. |+|||++++.
T Consensus 140 ~~~~------~~~fD~Ii~~~~~~~~~---~~~~~~---L~~gG~lv~~ 176 (215)
T TIGR00080 140 GWEP------LAPYDRIYVTAAGPKIP---EALIDQ---LKEGGILVMP 176 (215)
T ss_pred CCcc------cCCCCEEEEcCCccccc---HHHHHh---cCcCcEEEEE
Confidence 4332 36899999998765543 456677 9999999884
No 18
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.64 E-value=8.3e-15 Score=121.71 Aligned_cols=101 Identities=23% Similarity=0.395 Sum_probs=86.5
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.++.+|||+|||+|..+..++...+ .++|+++|.++++++.++++.+..++.+ ++++++|+.+... .++||
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~-------~~~fD 111 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQH-------EEQFD 111 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccc-------cCCcc
Confidence 3578999999999999999987655 6899999999999999999999988864 9999999976421 47999
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+|++++ ..++..+++.+.++ |+|||++++.
T Consensus 112 ~I~s~~-~~~~~~~~~~~~~~---LkpgG~lvi~ 141 (181)
T TIGR00138 112 VITSRA-LASLNVLLELTLNL---LKVGGYFLAY 141 (181)
T ss_pred EEEehh-hhCHHHHHHHHHHh---cCCCCEEEEE
Confidence 999987 55677788888888 9999999975
No 19
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.64 E-value=6.8e-16 Score=133.05 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=83.0
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (282)
Q Consensus 111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~ 190 (282)
+..+....++.+|||+|||+|.++..+++..++.++|+++|+|++|++.|++..+..+.. +++++++|+.+. +..
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p~~--- 113 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-PFP--- 113 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S----
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-cCC---
Confidence 333445567889999999999999999998876799999999999999999999988876 699999999764 322
Q ss_pred CCCCceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411 191 GEASSYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG 237 (282)
Q Consensus 191 ~~~~~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g 237 (282)
+++||.|++.-.. .+....++++.++ |||||.+++-+...+.
T Consensus 114 --d~sfD~v~~~fglrn~~d~~~~l~E~~RV---LkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 114 --DNSFDAVTCSFGLRNFPDRERALREMYRV---LKPGGRLVILEFSKPR 158 (233)
T ss_dssp --TT-EEEEEEES-GGG-SSHHHHHHHHHHH---EEEEEEEEEEEEEB-S
T ss_pred --CCceeEEEHHhhHHhhCCHHHHHHHHHHH---cCCCeEEEEeeccCCC
Confidence 6899999987653 3456677778787 9999999886665443
No 20
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.64 E-value=3.3e-15 Score=127.29 Aligned_cols=118 Identities=24% Similarity=0.361 Sum_probs=98.1
Q ss_pred CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (282)
Q Consensus 101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (282)
..+.|.....+...+...++.+|||||||+|+.+..+++..+++++|+++|+++++++.++++++..++. +++++++|+
T Consensus 58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~ 136 (212)
T PRK13942 58 TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDG 136 (212)
T ss_pred EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCc
Confidence 3467777777777778888999999999999999999998766689999999999999999999998875 599999998
Q ss_pred hhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 181 ~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
.+..+. .++||+|++++...+.. +.+.+. |+|||.+++.
T Consensus 137 ~~~~~~------~~~fD~I~~~~~~~~~~---~~l~~~---LkpgG~lvi~ 175 (212)
T PRK13942 137 TLGYEE------NAPYDRIYVTAAGPDIP---KPLIEQ---LKDGGIMVIP 175 (212)
T ss_pred ccCCCc------CCCcCEEEECCCcccch---HHHHHh---hCCCcEEEEE
Confidence 654321 47899999988765543 356667 9999999884
No 21
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=5.4e-15 Score=125.92 Aligned_cols=137 Identities=20% Similarity=0.329 Sum_probs=116.1
Q ss_pred CChhHHHHHHhccCChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEE
Q 023411 68 VTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCL 147 (282)
Q Consensus 68 ~~~~l~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v 147 (282)
+.+.+.+|+.. ++...-.+.|....++...+.+.++.+|+|.|+|+|..+.+|+..+.+.|+|
T Consensus 60 l~p~~~d~~~~-----------------~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v 122 (256)
T COG2519 60 LKPTPEDYLLS-----------------MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHV 122 (256)
T ss_pred eCCCHHHHHHh-----------------CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceE
Confidence 56666677666 3333446788888899999999999999999999999999999998878999
Q ss_pred EEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcE
Q 023411 148 VACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGI 227 (282)
Q Consensus 148 ~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~ 227 (282)
+++|+.+++++.|++|++..++.+++++..+|..+... .+.||.||+|-+.+ .++++.+.+. |+|||.
T Consensus 123 ~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-------~~~vDav~LDmp~P--W~~le~~~~~---Lkpgg~ 190 (256)
T COG2519 123 TTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-------EEDVDAVFLDLPDP--WNVLEHVSDA---LKPGGV 190 (256)
T ss_pred EEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-------ccccCEEEEcCCCh--HHHHHHHHHH---hCCCcE
Confidence 99999999999999999999999999999999987543 46999999997633 4567788887 999999
Q ss_pred EEEeCC
Q 023411 228 IVIDNV 233 (282)
Q Consensus 228 lv~dd~ 233 (282)
+++-..
T Consensus 191 ~~~y~P 196 (256)
T COG2519 191 VVVYSP 196 (256)
T ss_pred EEEEcC
Confidence 988443
No 22
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.62 E-value=6.5e-15 Score=122.76 Aligned_cols=100 Identities=20% Similarity=0.367 Sum_probs=86.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
++.+|||+|||+|..++.++...+ +++|+++|+++++++.++++.+.+++++ ++++++|+.+... .++||+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-------~~~fDl 115 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-------EEKFDV 115 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-------CCCccE
Confidence 478999999999999999998765 7899999999999999999999999876 9999999976321 368999
Q ss_pred EEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 199 AFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
|+++.. .....+++.+.++ |+|||++++-
T Consensus 116 V~~~~~-~~~~~~l~~~~~~---LkpGG~lv~~ 144 (187)
T PRK00107 116 VTSRAV-ASLSDLVELCLPL---LKPGGRFLAL 144 (187)
T ss_pred EEEccc-cCHHHHHHHHHHh---cCCCeEEEEE
Confidence 999764 4567788888888 9999999885
No 23
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.61 E-value=3.2e-14 Score=119.74 Aligned_cols=123 Identities=23% Similarity=0.349 Sum_probs=98.6
Q ss_pred CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (282)
Q Consensus 100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd 179 (282)
.+.+.+....++...+...++.+|||+|||+|.++..++...+ +++|+++|+++++++.++++++..++. +++++++|
T Consensus 21 ~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d 98 (196)
T PRK07402 21 IPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGS 98 (196)
T ss_pred CCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECc
Confidence 3455666666666666777788999999999999999987665 689999999999999999999998885 59999999
Q ss_pred hhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 180 ~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
+.+.+..+ ...+|.++++.. ......++.+.++ |+|||.+++...
T Consensus 99 ~~~~~~~~-----~~~~d~v~~~~~-~~~~~~l~~~~~~---LkpgG~li~~~~ 143 (196)
T PRK07402 99 APECLAQL-----APAPDRVCIEGG-RPIKEILQAVWQY---LKPGGRLVATAS 143 (196)
T ss_pred hHHHHhhC-----CCCCCEEEEECC-cCHHHHHHHHHHh---cCCCeEEEEEee
Confidence 87654433 345788888764 3456778888888 999999999764
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.61 E-value=3.2e-15 Score=120.63 Aligned_cols=108 Identities=18% Similarity=0.329 Sum_probs=88.8
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
++..+|||+|||+|..+..++....++++++++|+++++++.|++.++..+.. +++++++|+.+ ++... .++||
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~----~~~~D 75 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL----EEKFD 75 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS----STTEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc----CCCee
Confidence 35679999999999999999966555799999999999999999999999988 69999999987 33210 27999
Q ss_pred EEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 198 FAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 198 lV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+|++.....+ ....++.+.++ |++||++++.+..
T Consensus 76 ~I~~~~~l~~~~~~~~~l~~~~~~---lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHHFPDPEKVLKNIIRL---LKPGGILIISDPN 112 (152)
T ss_dssp EEEEESTGGGTSHHHHHHHHHHHH---EEEEEEEEEEEEE
T ss_pred EEEEcCchhhccCHHHHHHHHHHH---cCCCcEEEEEECC
Confidence 9999876433 44567777787 9999999998776
No 25
>PLN03075 nicotianamine synthase; Provisional
Probab=99.60 E-value=9.1e-15 Score=128.94 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEccccc-HHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH-hCCCCcEEEEEcchh
Q 023411 104 SPDQAQLLAMLVQILGAQRCIEVGVYTG-YSSLAIALVLPESGCLVACERDARSLEVAKKYYER-AGVSHKVKIKHGLAA 181 (282)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G-~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~g~~~~v~~~~gd~~ 181 (282)
.+.+..++..+... ++++|+|||||.| ++++.++....++++++++|+++++++.|++.+.. .++.++++|..+|+.
T Consensus 109 ~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~ 187 (296)
T PLN03075 109 SKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM 187 (296)
T ss_pred HHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh
Confidence 44455555555554 8899999999955 45666665544489999999999999999999965 889899999999998
Q ss_pred hHHHHHHhCCCCCceeEEEEcCC----ccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 182 DSLKALILNGEASSYDFAFVDAE----KRMYQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~----~~~~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
+..+. .+.||+||+++- +......++.+.+. |+|||++++..
T Consensus 188 ~~~~~------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~---LkPGG~Lvlr~ 233 (296)
T PLN03075 188 DVTES------LKEYDVVFLAALVGMDKEEKVKVIEHLGKH---MAPGALLMLRS 233 (296)
T ss_pred hcccc------cCCcCEEEEecccccccccHHHHHHHHHHh---cCCCcEEEEec
Confidence 74322 378999999952 46778889999988 99999999976
No 26
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.58 E-value=2e-14 Score=118.29 Aligned_cols=109 Identities=22% Similarity=0.361 Sum_probs=88.3
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh
Q 023411 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189 (282)
Q Consensus 110 ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~ 189 (282)
+|...+...+..+|||+|||+|..++.+++..+ ..+|+++|+++.+++.++++++.+++.+ +++++.|..+..+
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~---- 95 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP---- 95 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC----
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc----
Confidence 455555555888999999999999999999876 5689999999999999999999999987 9999999876443
Q ss_pred CCCCCceeEEEEcCCcc--------ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 190 NGEASSYDFAFVDAEKR--------MYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 190 ~~~~~~fDlV~id~~~~--------~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
.++||+|+++++.. ....+++.+.++ |+|||.+++
T Consensus 96 ---~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~---Lk~~G~l~l 138 (170)
T PF05175_consen 96 ---DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRY---LKPGGRLFL 138 (170)
T ss_dssp ---TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHH---EEEEEEEEE
T ss_pred ---ccceeEEEEccchhcccccchhhHHHHHHHHHHh---ccCCCEEEE
Confidence 48999999987632 245567777787 999998855
No 27
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.58 E-value=1.7e-14 Score=124.32 Aligned_cols=113 Identities=18% Similarity=0.293 Sum_probs=89.8
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (282)
Q Consensus 111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~ 190 (282)
+...+...++.+|||+|||+|..+..+++..+++++|+++|+++++++.++++++..++. +++++++|+.+.. .
T Consensus 37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~--~--- 110 (231)
T TIGR02752 37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAMELP--F--- 110 (231)
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhcCC--C---
Confidence 334445567789999999999999999998766789999999999999999999887774 6999999986532 1
Q ss_pred CCCCceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 191 GEASSYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 191 ~~~~~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
..++||+|++.... .++...++.+.++ |+|||.+++.+.
T Consensus 111 -~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~---Lk~gG~l~~~~~ 152 (231)
T TIGR02752 111 -DDNSFDYVTIGFGLRNVPDYMQVLREMYRV---VKPGGKVVCLET 152 (231)
T ss_pred -CCCCccEEEEecccccCCCHHHHHHHHHHH---cCcCeEEEEEEC
Confidence 14799999987553 3455667777777 999999987554
No 28
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.7e-14 Score=120.27 Aligned_cols=118 Identities=26% Similarity=0.412 Sum_probs=100.5
Q ss_pred CCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE
Q 023411 98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH 177 (282)
Q Consensus 98 ~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~ 177 (282)
.+...+.|.....+.+++...++.+|||||||+||.+..|++.. ++|+++|+.++..+.|+++++..|+.+ |.+++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~ 126 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTVRH 126 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEE
Confidence 34456777788888889999999999999999999999999875 499999999999999999999999987 99999
Q ss_pred cchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 178 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 178 gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+|...-++. ..+||.|++.+.....+. .+.+. |++||.+|+-
T Consensus 127 gDG~~G~~~------~aPyD~I~Vtaaa~~vP~---~Ll~Q---L~~gGrlv~P 168 (209)
T COG2518 127 GDGSKGWPE------EAPYDRIIVTAAAPEVPE---ALLDQ---LKPGGRLVIP 168 (209)
T ss_pred CCcccCCCC------CCCcCEEEEeeccCCCCH---HHHHh---cccCCEEEEE
Confidence 999875553 489999999988666554 34455 8999999984
No 29
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.58 E-value=1.5e-14 Score=122.32 Aligned_cols=122 Identities=19% Similarity=0.267 Sum_probs=95.2
Q ss_pred CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (282)
Q Consensus 100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd 179 (282)
.+.+++....+...+.. ++.+|||+|||+|..+..++...+ +.+|+++|+++++++.+++++...++. +++++++|
T Consensus 23 ~~~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d 98 (202)
T PRK00121 23 WPRLSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGD 98 (202)
T ss_pred chhhcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecC
Confidence 34556666666666666 667999999999999999998876 679999999999999999999988874 59999999
Q ss_pred hhhHHHHHHhCCCCCceeEEEEcCCc------c-----ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 180 AADSLKALILNGEASSYDFAFVDAEK------R-----MYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 180 ~~~~l~~l~~~~~~~~fDlV~id~~~------~-----~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+.+.++... ..++||+|++.... + ....+++.+.++ |+|||++++.
T Consensus 99 ~~~~l~~~~---~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~---LkpgG~l~i~ 155 (202)
T PRK00121 99 AVEVLLDMF---PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARK---LKPGGEIHFA 155 (202)
T ss_pred HHHHHHHHc---CccccceEEEECCCCCCCccccccccCCHHHHHHHHHH---cCCCCEEEEE
Confidence 944444221 14789999985321 1 146788888888 9999999884
No 30
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.58 E-value=3.1e-14 Score=123.05 Aligned_cols=128 Identities=21% Similarity=0.265 Sum_probs=97.7
Q ss_pred cCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEE
Q 023411 96 MRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI 175 (282)
Q Consensus 96 ~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~ 175 (282)
+++..-.+.|....++...+...++.+|||.|+|+|..|.++++.+.+.|+|+++|..++.++.|+++++.+|+.+++++
T Consensus 17 l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~ 96 (247)
T PF08704_consen 17 LPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTV 96 (247)
T ss_dssp S-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEE
T ss_pred ccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCcee
Confidence 45555578999999999999999999999999999999999999998789999999999999999999999999989999
Q ss_pred EEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCC-CCCcEEEEe
Q 023411 176 KHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQI-RVGGIIVID 231 (282)
Q Consensus 176 ~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~L-kpgG~lv~d 231 (282)
.+.|..+... ..+.+..+|.||+|-+.+ ...+..+.+. | ++||.+++-
T Consensus 97 ~~~Dv~~~g~---~~~~~~~~DavfLDlp~P--w~~i~~~~~~---L~~~gG~i~~f 145 (247)
T PF08704_consen 97 HHRDVCEEGF---DEELESDFDAVFLDLPDP--WEAIPHAKRA---LKKPGGRICCF 145 (247)
T ss_dssp EES-GGCG-----STT-TTSEEEEEEESSSG--GGGHHHHHHH---E-EEEEEEEEE
T ss_pred Eecceecccc---cccccCcccEEEEeCCCH--HHHHHHHHHH---HhcCCceEEEE
Confidence 9999974321 001147899999997733 2346677787 9 899999873
No 31
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.57 E-value=1.8e-14 Score=126.47 Aligned_cols=115 Identities=11% Similarity=0.084 Sum_probs=88.4
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH--hCCCCcEEEEEcchhhHHHHHHhC
Q 023411 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGVSHKVKIKHGLAADSLKALILN 190 (282)
Q Consensus 113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~g~~~~v~~~~gd~~~~l~~l~~~ 190 (282)
.+....++.+|||+|||+|..+..+++..++.++|+|+|+|++|++.|+++... .+...+++++++|+.+. +.
T Consensus 67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~---- 141 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PF---- 141 (261)
T ss_pred HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CC----
Confidence 344556778999999999999999998775568999999999999999877542 22334699999998653 21
Q ss_pred CCCCceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411 191 GEASSYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNVLWH 236 (282)
Q Consensus 191 ~~~~~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~ 236 (282)
.+++||+|++.... .+....++++.++ |||||.+++-+...+
T Consensus 142 -~~~sfD~V~~~~~l~~~~d~~~~l~ei~rv---LkpGG~l~i~d~~~~ 186 (261)
T PLN02233 142 -DDCYFDAITMGYGLRNVVDRLKAMQEMYRV---LKPGSRVSILDFNKS 186 (261)
T ss_pred -CCCCEeEEEEecccccCCCHHHHHHHHHHH---cCcCcEEEEEECCCC
Confidence 15789999986543 3456677788887 999999988776543
No 32
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.57 E-value=3.5e-14 Score=124.36 Aligned_cols=103 Identities=21% Similarity=0.314 Sum_probs=86.2
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.++.+|||+|||+|..+..+++. +.+|+++|+++++++.|+++....++.++++++++|+.+..+.. .++||
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~-----~~~fD 114 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL-----ETPVD 114 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-----CCCCC
Confidence 35679999999999999999985 47999999999999999999999888888999999997754332 57999
Q ss_pred EEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 198 FAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 198 lV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+|++.... .+....++.+.++ |||||++++-
T Consensus 115 ~V~~~~vl~~~~~~~~~l~~~~~~---LkpgG~l~i~ 148 (255)
T PRK11036 115 LILFHAVLEWVADPKSVLQTLWSV---LRPGGALSLM 148 (255)
T ss_pred EEEehhHHHhhCCHHHHHHHHHHH---cCCCeEEEEE
Confidence 99988763 3445677777777 9999999764
No 33
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.56 E-value=1.7e-14 Score=122.16 Aligned_cols=116 Identities=23% Similarity=0.382 Sum_probs=91.2
Q ss_pred ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (282)
Q Consensus 102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (282)
...|..-..+.+++...++.+|||||||+||.+..++..+.+.++|+++|++++..+.|+++++..+.. +++++++|..
T Consensus 55 is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~ 133 (209)
T PF01135_consen 55 ISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGS 133 (209)
T ss_dssp E--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GG
T ss_pred chHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchh
Confidence 456666666777777889999999999999999999998876789999999999999999999999987 4999999987
Q ss_pred hHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
.-.+. ..+||.|++.+.....+. .+.+. |++||+||+
T Consensus 134 ~g~~~------~apfD~I~v~~a~~~ip~---~l~~q---L~~gGrLV~ 170 (209)
T PF01135_consen 134 EGWPE------EAPFDRIIVTAAVPEIPE---ALLEQ---LKPGGRLVA 170 (209)
T ss_dssp GTTGG------G-SEEEEEESSBBSS--H---HHHHT---EEEEEEEEE
T ss_pred hcccc------CCCcCEEEEeeccchHHH---HHHHh---cCCCcEEEE
Confidence 65443 478999999988765543 35566 899999998
No 34
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.55 E-value=4.9e-14 Score=120.95 Aligned_cols=123 Identities=19% Similarity=0.273 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 023411 106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185 (282)
Q Consensus 106 ~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~ 185 (282)
..+-+|..++.....++|||+|||+|..++.++++.+ ..++++||+++++.+.|+++++.+++.++++++++|..++.+
T Consensus 31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~ 109 (248)
T COG4123 31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK 109 (248)
T ss_pred cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh
Confidence 3456778888887899999999999999999999876 499999999999999999999999999999999999988766
Q ss_pred HHHhCCCCCceeEEEEcCCc---------------------cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 186 ALILNGEASSYDFAFVDAEK---------------------RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 186 ~l~~~~~~~~fDlV~id~~~---------------------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
... ..+||+|+++++. ....++++.+..+ |||||.+.+ ++.+..
T Consensus 110 ~~~----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~---lk~~G~l~~--V~r~er 174 (248)
T COG4123 110 ALV----FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKL---LKPGGRLAF--VHRPER 174 (248)
T ss_pred ccc----ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHH---ccCCCEEEE--EecHHH
Confidence 552 4579999998651 1145566777777 999999988 544443
No 35
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.54 E-value=2.1e-13 Score=121.10 Aligned_cols=119 Identities=17% Similarity=0.233 Sum_probs=93.0
Q ss_pred ccCHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE
Q 023411 102 QVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH 177 (282)
Q Consensus 102 ~~~~~~~~ll~~l~~----~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~ 177 (282)
...++...++...+. ..++.+|||+|||+|.+++.++...+ +.+|+++|+|+.+++.|+++++.+++.+++++++
T Consensus 100 ipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~ 178 (284)
T TIGR03533 100 IPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQ 178 (284)
T ss_pred cCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 355666666666543 23467999999999999999999876 6899999999999999999999999888899999
Q ss_pred cchhhHHHHHHhCCCCCceeEEEEcCCcc----------------------------ccHHHHHHHHHhhcCCCCCcEEE
Q 023411 178 GLAADSLKALILNGEASSYDFAFVDAEKR----------------------------MYQEYFELLLQLLLQIRVGGIIV 229 (282)
Q Consensus 178 gd~~~~l~~l~~~~~~~~fDlV~id~~~~----------------------------~~~~~l~~~~~~~~~LkpgG~lv 229 (282)
+|..+.++ .++||+|+++++.. .+..++..+.++ |+|||.++
T Consensus 179 ~D~~~~~~-------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~---L~~gG~l~ 248 (284)
T TIGR03533 179 SDLFAALP-------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADH---LNENGVLV 248 (284)
T ss_pred CchhhccC-------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHh---cCCCCEEE
Confidence 99865432 35899999985421 123345555666 99999999
Q ss_pred Ee
Q 023411 230 ID 231 (282)
Q Consensus 230 ~d 231 (282)
++
T Consensus 249 ~e 250 (284)
T TIGR03533 249 VE 250 (284)
T ss_pred EE
Confidence 86
No 36
>PLN02244 tocopherol O-methyltransferase
Probab=99.53 E-value=5.4e-14 Score=128.08 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=88.1
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.++.+|||||||+|.++..+++.. +++|+++|+++.+++.++++.+..++.++++++++|+.+. +. .+++||
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~-----~~~~FD 188 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PF-----EDGQFD 188 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CC-----CCCCcc
Confidence 467899999999999999999876 4799999999999999999999888888899999998753 21 157999
Q ss_pred EEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 198 FAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 198 lV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+|++..... +...+++.+.++ |||||.+++.+..
T Consensus 189 ~V~s~~~~~h~~d~~~~l~e~~rv---LkpGG~lvi~~~~ 225 (340)
T PLN02244 189 LVWSMESGEHMPDKRKFVQELARV---AAPGGRIIIVTWC 225 (340)
T ss_pred EEEECCchhccCCHHHHHHHHHHH---cCCCcEEEEEEec
Confidence 999865533 345677888888 9999999987654
No 37
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.53 E-value=3e-14 Score=120.57 Aligned_cols=105 Identities=19% Similarity=0.307 Sum_probs=86.8
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.++.+|||||||.|..+..||+. +++|+|+|+++++++.|+....+.++. +++.+.++.+.... .++||
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~------~~~FD 126 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA------GGQFD 126 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc------CCCcc
Confidence 57789999999999999999985 589999999999999999999988875 77887777655432 37999
Q ss_pred EEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411 198 FAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNVLWH 236 (282)
Q Consensus 198 lV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~~~ 236 (282)
+|+|-...+| ...++..|.++ +||||++++..+-.+
T Consensus 127 vV~cmEVlEHv~dp~~~~~~c~~l---vkP~G~lf~STinrt 165 (243)
T COG2227 127 VVTCMEVLEHVPDPESFLRACAKL---VKPGGILFLSTINRT 165 (243)
T ss_pred EEEEhhHHHccCCHHHHHHHHHHH---cCCCcEEEEeccccC
Confidence 9998766444 45577778787 999999999887533
No 38
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.53 E-value=4.9e-14 Score=130.01 Aligned_cols=161 Identities=16% Similarity=0.206 Sum_probs=117.3
Q ss_pred ccCccccccccccccccccccccCCCChhHHHHHHhccCChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCE
Q 023411 43 KNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQR 122 (282)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 122 (282)
.|+......+...|||.......+.+++.+ .|.+....+.+.+.+.+..... .+...+...++.+
T Consensus 106 ~n~~~~~~~~i~~hYd~~n~~y~l~ld~~m-~ys~g~~~~~~~L~~Aq~~k~~--------------~l~~~l~l~~g~r 170 (383)
T PRK11705 106 LQSKKRAWIVGKEHYDLGNDLFEAMLDPRM-QYSCGYWKDADTLEEAQEAKLD--------------LICRKLQLKPGMR 170 (383)
T ss_pred cCChhhHHHhhhhhcCCcHHHHHHhcCCCC-cccccccCCCCCHHHHHHHHHH--------------HHHHHhCCCCCCE
Confidence 455566678888999988877777887775 5655554433344444433322 2333445567889
Q ss_pred EEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEc
Q 023411 123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD 202 (282)
Q Consensus 123 VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id 202 (282)
|||||||+|..+..+++.. +++|+++|+|+++++.++++.+ ++ .+++..+|..+. .++||.|+..
T Consensus 171 VLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---------~~~fD~Ivs~ 235 (383)
T PRK11705 171 VLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---------NGQFDRIVSV 235 (383)
T ss_pred EEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---------CCCCCEEEEe
Confidence 9999999999999999875 4799999999999999999874 33 378888887542 3789999865
Q ss_pred CC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411 203 AE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWH 236 (282)
Q Consensus 203 ~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~ 236 (282)
.. ..++..+++.+.++ |||||+++++.+..+
T Consensus 236 ~~~ehvg~~~~~~~l~~i~r~---LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 236 GMFEHVGPKNYRTYFEVVRRC---LKPDGLFLLHTIGSN 271 (383)
T ss_pred CchhhCChHHHHHHHHHHHHH---cCCCcEEEEEEccCC
Confidence 43 23456788888888 999999999876443
No 39
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.53 E-value=8.8e-14 Score=106.87 Aligned_cols=102 Identities=22% Similarity=0.376 Sum_probs=84.4
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
+.+|||+|||+|.+++.+++.. ..+++++|+++..++.++.++...++.++++++++|+.+..+.+. .++||+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~----~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP----DGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT----TT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc----CceeEEE
Confidence 3589999999999999999886 489999999999999999999999998889999999987653332 6899999
Q ss_pred EEcCCccc-----------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411 200 FVDAEKRM-----------YQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 200 ~id~~~~~-----------~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
+.+.+... +..+++.+.++ |+|||++++
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~---L~~gG~~~~ 113 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARL---LKPGGVLVF 113 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHH---EEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHH---cCCCeEEEE
Confidence 99876321 35678888888 999999876
No 40
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.52 E-value=4.5e-13 Score=125.90 Aligned_cols=159 Identities=22% Similarity=0.269 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 023411 106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185 (282)
Q Consensus 106 ~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~ 185 (282)
....++..++...++.+|||+|||+|+.+..+++.++..++|+++|+++++++.++++++..|+.+ ++++++|+.+...
T Consensus 239 ~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~ 317 (434)
T PRK14901 239 RSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLE 317 (434)
T ss_pred HHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhccc
Confidence 344555556666788999999999999999999987656899999999999999999999999875 9999999876432
Q ss_pred HHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCccc
Q 023411 186 ALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVA 240 (282)
Q Consensus 186 ~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~ 240 (282)
.... ..++||.|++|++... ....++.+.++ |||||.||........
T Consensus 318 ~~~~--~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~---lkpgG~lvystcsi~~--- 389 (434)
T PRK14901 318 LKPQ--WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPL---LKPGGTLVYATCTLHP--- 389 (434)
T ss_pred cccc--ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHh---cCCCCEEEEEeCCCCh---
Confidence 1100 0368999999875210 13345566666 9999999886554322
Q ss_pred CCcCCChhhHHHHHHHHHhhhCCCeEEE-----Eeec---CCceEEEEE
Q 023411 241 DQMVNDAKTISIRNFNKNLMEDERVSIS-----MVPI---GDGMTICQK 281 (282)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~lp~---~~Gl~~~~k 281 (282)
.++..-+..|++ +.|+++.. ++|- .||+-+|+-
T Consensus 390 -----~Ene~~v~~~l~---~~~~~~~~~~~~~~~P~~~~~dGfF~a~l 430 (434)
T PRK14901 390 -----AENEAQIEQFLA---RHPDWKLEPPKQKIWPHRQDGDGFFMAVL 430 (434)
T ss_pred -----hhHHHHHHHHHH---hCCCcEecCCCCccCCCCCCCCcEEEEEE
Confidence 123334556653 46676644 4553 589888863
No 41
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.50 E-value=8.7e-13 Score=110.96 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=88.8
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh
Q 023411 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189 (282)
Q Consensus 110 ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~ 189 (282)
++..+....++.+|||+|||+|.+++.++... ..+|+++|+++++++.++++++.++.. +++++++|+.+.++..
T Consensus 44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~-- 118 (199)
T PRK10909 44 LFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQP-- 118 (199)
T ss_pred HHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhc--
Confidence 44444444466799999999999999755543 369999999999999999999999875 5999999998765432
Q ss_pred CCCCCceeEEEEcCCc-cc-cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 190 NGEASSYDFAFVDAEK-RM-YQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 190 ~~~~~~fDlV~id~~~-~~-~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
.++||+||+|++. .. ....++.+.+ .++|+|+|+++++...
T Consensus 119 ---~~~fDlV~~DPPy~~g~~~~~l~~l~~-~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 119 ---GTPHNVVFVDPPFRKGLLEETINLLED-NGWLADEALIYVESEV 161 (199)
T ss_pred ---CCCceEEEECCCCCCChHHHHHHHHHH-CCCcCCCcEEEEEecC
Confidence 3579999999993 32 3444555555 5678999999997543
No 42
>PRK00811 spermidine synthase; Provisional
Probab=99.50 E-value=1e-12 Score=116.68 Aligned_cols=105 Identities=20% Similarity=0.290 Sum_probs=85.3
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC--C--CCcEEEEEcchhhHHHHHHhCCCC
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V--SHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~--~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
..+++||+||||.|..+..++++.+ ..+|++||+++++++.+++++...+ . +++++++.+|+.+.+... .
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----~ 148 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-----E 148 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----C
Confidence 4678999999999999999987532 4699999999999999999987532 2 468999999998877652 5
Q ss_pred CceeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 194 SSYDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 194 ~~fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
++||+|++|...+ ...++++.+.+. |+|||++++.
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~---L~~gGvlv~~ 190 (283)
T PRK00811 149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCKRA---LKEDGIFVAQ 190 (283)
T ss_pred CcccEEEECCCCCCCchhhhhHHHHHHHHHHh---cCCCcEEEEe
Confidence 7999999986422 125677888888 9999999974
No 43
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.50 E-value=3.5e-13 Score=117.49 Aligned_cols=106 Identities=12% Similarity=0.216 Sum_probs=85.9
Q ss_pred cCCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
.++.+|||+|||+|..+..+++.+ .++++++++|+|+++++.|++++...+..++++++++|+.+.. ...+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~ 126 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--------IENA 126 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC--------CCCC
Confidence 356799999999999999998854 2478999999999999999999998888778999999986542 2468
Q ss_pred eEEEEcCCcc-----ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 197 DFAFVDAEKR-----MYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 197 DlV~id~~~~-----~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
|+|++....+ .....++.+.+. |+|||.+++.+.+
T Consensus 127 D~vv~~~~l~~l~~~~~~~~l~~i~~~---LkpGG~l~l~e~~ 166 (247)
T PRK15451 127 SMVVLNFTLQFLEPSERQALLDKIYQG---LNPGGALVLSEKF 166 (247)
T ss_pred CEEehhhHHHhCCHHHHHHHHHHHHHh---cCCCCEEEEEEec
Confidence 9988754322 235677888888 9999999997754
No 44
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.50 E-value=3.7e-13 Score=120.75 Aligned_cols=118 Identities=17% Similarity=0.236 Sum_probs=91.5
Q ss_pred cCHHHHHHHHHHHh-h-c--CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411 103 VSPDQAQLLAMLVQ-I-L--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (282)
Q Consensus 103 ~~~~~~~ll~~l~~-~-~--~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g 178 (282)
..++...++...+. . . ++.+|||+|||+|.+++.++...+ +.+|+++|+|+.+++.|+++++.+++.++++++++
T Consensus 113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~ 191 (307)
T PRK11805 113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIES 191 (307)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 45566666665443 1 1 236899999999999999999876 68999999999999999999999998888999999
Q ss_pred chhhHHHHHHhCCCCCceeEEEEcCCcc----------------------------ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 179 LAADSLKALILNGEASSYDFAFVDAEKR----------------------------MYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 179 d~~~~l~~l~~~~~~~~fDlV~id~~~~----------------------------~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
|..+.++ .++||+|+++++.- .+..+++.+.++ |+|||.+++
T Consensus 192 D~~~~l~-------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~---L~pgG~l~~ 261 (307)
T PRK11805 192 DLFAALP-------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDY---LTEDGVLVV 261 (307)
T ss_pred chhhhCC-------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHh---cCCCCEEEE
Confidence 9865432 35899999985411 123445666666 999999998
Q ss_pred e
Q 023411 231 D 231 (282)
Q Consensus 231 d 231 (282)
+
T Consensus 262 E 262 (307)
T PRK11805 262 E 262 (307)
T ss_pred E
Confidence 5
No 45
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.50 E-value=9.3e-13 Score=123.42 Aligned_cols=139 Identities=19% Similarity=0.282 Sum_probs=104.8
Q ss_pred ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (282)
Q Consensus 102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (282)
.+......++..++...++.+|||+|||+|+.|..++..++.+++|+++|+++++++.++++++..|+.+ ++++++|+.
T Consensus 220 ~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~ 298 (431)
T PRK14903 220 TVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAE 298 (431)
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchh
Confidence 3444555666667777888999999999999999999988667899999999999999999999999864 999999987
Q ss_pred hHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411 182 DSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNVLWH 236 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~ 236 (282)
+..... .++||.|++|++... ....+..+.++ |+|||+|+....-+.
T Consensus 299 ~l~~~~-----~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~---LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 299 RLTEYV-----QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKL---LEKGGILLYSTCTVT 370 (431)
T ss_pred hhhhhh-----hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHh---cCCCCEEEEEECCCC
Confidence 643222 468999999976311 12335555666 999999998766433
Q ss_pred CcccCCcCCChhhHHHHHHHH
Q 023411 237 GKVADQMVNDAKTISIRNFNK 257 (282)
Q Consensus 237 g~~~~~~~~~~~~~~~~~~~~ 257 (282)
- .++..-++.|++
T Consensus 371 ~--------eEne~vv~~fl~ 383 (431)
T PRK14903 371 K--------EENTEVVKRFVY 383 (431)
T ss_pred h--------hhCHHHHHHHHH
Confidence 2 223445666654
No 46
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.50 E-value=2e-13 Score=122.87 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=84.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
++.+|||||||+|..+..+++. +++|+|||+++++++.|+++....+...+++++++++.+.. .. .++||+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~-----~~~FD~ 201 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DE-----GRKFDA 201 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hc-----cCCCCE
Confidence 5569999999999999988863 57999999999999999988776665567999999986542 21 479999
Q ss_pred EEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 199 AFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 199 V~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
|++....+ +...+++.+.++ |||||.+++..+-
T Consensus 202 Vi~~~vLeHv~d~~~~L~~l~r~---LkPGG~liist~n 237 (322)
T PLN02396 202 VLSLEVIEHVANPAEFCKSLSAL---TIPNGATVLSTIN 237 (322)
T ss_pred EEEhhHHHhcCCHHHHHHHHHHH---cCCCcEEEEEECC
Confidence 99876533 456678888887 9999999998653
No 47
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.49 E-value=3.3e-13 Score=114.88 Aligned_cols=114 Identities=23% Similarity=0.334 Sum_probs=93.7
Q ss_pred ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (282)
Q Consensus 102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (282)
...|.....+..++...++.+|||+|||+|+++..++... ++++++|+++++++.++++++..++.+ ++++++|..
T Consensus 61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~ 136 (212)
T PRK00312 61 ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGW 136 (212)
T ss_pred eCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcc
Confidence 4677777777777888888999999999999999888764 489999999999999999999988865 999999986
Q ss_pred hHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+..+. .++||+|+++...... .+.+.+. |+|||.+++.
T Consensus 137 ~~~~~------~~~fD~I~~~~~~~~~---~~~l~~~---L~~gG~lv~~ 174 (212)
T PRK00312 137 KGWPA------YAPFDRILVTAAAPEI---PRALLEQ---LKEGGILVAP 174 (212)
T ss_pred cCCCc------CCCcCEEEEccCchhh---hHHHHHh---cCCCcEEEEE
Confidence 53321 3789999999875544 3456677 9999999985
No 48
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.49 E-value=2.4e-13 Score=114.57 Aligned_cols=101 Identities=13% Similarity=0.195 Sum_probs=80.7
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
...++.+|||+|||+|..+.++++. +.+|+++|+|+++++.++++....++. +++++.+|..+.. . .++
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~--~-----~~~ 95 (197)
T PRK11207 27 KVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLT--F-----DGE 95 (197)
T ss_pred ccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCC--c-----CCC
Confidence 3446789999999999999999974 469999999999999999999988875 4888888876531 1 367
Q ss_pred eeEEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 196 YDFAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 196 fDlV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
||+|++.... .....+++.+.++ |+|||++++
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~---LkpgG~~~~ 132 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRC---TKPGGYNLI 132 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHH---cCCCcEEEE
Confidence 9999976542 2345677888888 999998544
No 49
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.49 E-value=5.2e-13 Score=112.23 Aligned_cols=105 Identities=16% Similarity=0.251 Sum_probs=86.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
...+|||||||+|.++..++...| +.+|+++|+++.+++.|+++....++. +++++++|+.+.+..... .+++|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~---~~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFP---DGSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCC---CCceeE
Confidence 456999999999999999999886 789999999999999999999988886 699999999876543321 358999
Q ss_pred EEEcCC---cc--c------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 199 AFVDAE---KR--M------YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 199 V~id~~---~~--~------~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
|+++.+ .. + ...+++.+.++ |||||.+++.
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~---LkpgG~l~~~ 131 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANV---LKKGGVIHFK 131 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHH---hCCCCEEEEE
Confidence 998643 11 1 25678888888 9999999773
No 50
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.49 E-value=8e-13 Score=124.62 Aligned_cols=124 Identities=22% Similarity=0.296 Sum_probs=97.8
Q ss_pred ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (282)
Q Consensus 102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (282)
.+......++...+...++.+|||+|||+|..+..+++.++++++|+++|+++++++.++++++..|+.+ ++++++|+.
T Consensus 233 ~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~ 311 (444)
T PRK14902 233 TIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDAR 311 (444)
T ss_pred EEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcc
Confidence 3444556667767777788999999999999999999987556899999999999999999999999876 999999997
Q ss_pred hHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 182 DSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+....+ .++||+|++|++... ....++.+.++ |||||.|+.....
T Consensus 312 ~~~~~~-----~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~---LkpGG~lvystcs 381 (444)
T PRK14902 312 KVHEKF-----AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQY---LKKGGILVYSTCT 381 (444)
T ss_pred cccchh-----cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHH---cCCCCEEEEEcCC
Confidence 654333 368999999975211 12345666666 9999999976543
No 51
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.49 E-value=7.8e-13 Score=114.68 Aligned_cols=107 Identities=7% Similarity=0.082 Sum_probs=86.2
Q ss_pred CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
+..+|||+|||+|..+..+++.++ ++++++++|+++++++.|+++++..+...+++++++|+.+.. ...+|
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~d 124 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--------IKNAS 124 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--------CCCCC
Confidence 567999999999999999998763 478999999999999999999988776667999999997542 24689
Q ss_pred EEEEcCCcc-----ccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411 198 FAFVDAEKR-----MYQEYFELLLQLLLQIRVGGIIVIDNVLWH 236 (282)
Q Consensus 198 lV~id~~~~-----~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~ 236 (282)
+|++....+ +...+++.+.+. |+|||.+++.+....
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~---LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEG---LNPNGVLVLSEKFRF 165 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHh---cCCCeEEEEeecccC
Confidence 888765422 234567777777 999999999886543
No 52
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.48 E-value=1.9e-13 Score=117.17 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=86.9
Q ss_pred CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~ 200 (282)
++|||||||+|..+..+++..+ +++++++|+|+++++.++++++..|+.++++++.+|+.+.. . .++||+|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~--~-----~~~fD~I~ 72 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP--F-----PDTYDLVF 72 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC--C-----CCCCCEee
Confidence 4799999999999999998875 68999999999999999999999999889999999985431 1 36899999
Q ss_pred EcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 201 VDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 201 id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+... ..+...+++.+.++ |+|||.+++.+..
T Consensus 73 ~~~~l~~~~~~~~~l~~~~~~---LkpgG~l~i~~~~ 106 (224)
T smart00828 73 GFEVIHHIKDKMDLFSNISRH---LKDGGHLVLADFI 106 (224)
T ss_pred hHHHHHhCCCHHHHHHHHHHH---cCCCCEEEEEEcc
Confidence 7543 23456788888888 9999999998775
No 53
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.48 E-value=1.3e-12 Score=123.24 Aligned_cols=122 Identities=18% Similarity=0.226 Sum_probs=95.0
Q ss_pred ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (282)
Q Consensus 102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (282)
.+......+...++...++.+|||+|||+|+.+..+++.++..++|+++|+++++++.++++++..|+. +++++++|+.
T Consensus 233 ~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~ 311 (445)
T PRK14904 233 SVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDAR 311 (445)
T ss_pred EEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccc
Confidence 344445555556666677889999999999999999988765689999999999999999999999986 5999999987
Q ss_pred hHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 182 DSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+..+ .++||.|++|++... ....+..+.++ |+|||++++....
T Consensus 312 ~~~~-------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~---lkpgG~lvystcs 379 (445)
T PRK14904 312 SFSP-------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL---LKPGGVLVYATCS 379 (445)
T ss_pred cccc-------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEEeCC
Confidence 6432 468999999865210 11345555566 9999999997654
No 54
>PRK04266 fibrillarin; Provisional
Probab=99.48 E-value=1.9e-12 Score=111.08 Aligned_cols=108 Identities=12% Similarity=0.147 Sum_probs=83.0
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHHhCCC
Q 023411 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGE 192 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~l~~~~~ 192 (282)
+...++.+|||+|||+|..+..+++.++ .++|+++|+++++++.+.++.+.. .++.++.+|+.+.. ..+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l----- 138 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV----- 138 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc-----
Confidence 4556788999999999999999999886 789999999999999887776542 35899999986421 112
Q ss_pred CCceeEEEEcCCccc-cHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411 193 ASSYDFAFVDAEKRM-YQEYFELLLQLLLQIRVGGIIVIDNVLW 235 (282)
Q Consensus 193 ~~~fDlV~id~~~~~-~~~~l~~~~~~~~~LkpgG~lv~dd~~~ 235 (282)
.++||+||++..... ....++.+.++ |||||.+++. +.|
T Consensus 139 ~~~~D~i~~d~~~p~~~~~~L~~~~r~---LKpGG~lvI~-v~~ 178 (226)
T PRK04266 139 VEKVDVIYQDVAQPNQAEIAIDNAEFF---LKDGGYLLLA-IKA 178 (226)
T ss_pred cccCCEEEECCCChhHHHHHHHHHHHh---cCCCcEEEEE-Eec
Confidence 357999998865322 23346778787 9999999985 444
No 55
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.48 E-value=5.2e-13 Score=112.29 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=79.1
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
.+...++.+|||+|||+|..+.++++. +.+|+++|+++.+++.++++....++. +++..+|.... + + .
T Consensus 25 ~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~-~-~-----~ 92 (195)
T TIGR00477 25 AVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA-A-L-----N 92 (195)
T ss_pred HhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc-c-c-----c
Confidence 334456779999999999999999974 579999999999999999998887774 77777776432 1 2 3
Q ss_pred CceeEEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 194 SSYDFAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 194 ~~fDlV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
++||+|++.... .....+++.+.++ |+|||++++
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~lli 131 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAH---TRPGGYNLI 131 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHH---hCCCcEEEE
Confidence 689999876442 2345678888888 999998554
No 56
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.47 E-value=3.8e-13 Score=118.84 Aligned_cols=113 Identities=16% Similarity=0.291 Sum_probs=91.4
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
+...++.+|||||||+|..++.++....+.++|+++|+++++++.|+++....++. +++++.+|+.+. +. .++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~~-----~~~ 145 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-PV-----ADN 145 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-CC-----CCC
Confidence 34567889999999999999888887665679999999999999999999988875 699999998543 21 146
Q ss_pred ceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411 195 SYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG 237 (282)
Q Consensus 195 ~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g 237 (282)
+||+|+.+... .+....++.+.++ |||||.+++.++...+
T Consensus 146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~---LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 146 SVDVIISNCVINLSPDKERVFKEAFRV---LKPGGRFAISDVVLRG 188 (272)
T ss_pred ceeEEEEcCcccCCCCHHHHHHHHHHH---cCCCcEEEEEEeeccC
Confidence 89999987653 2345678888888 9999999998876554
No 57
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.47 E-value=1.9e-12 Score=113.86 Aligned_cols=119 Identities=16% Similarity=0.219 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 023411 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184 (282)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l 184 (282)
.....+...++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++.+|+.+ ++++++|+.+..
T Consensus 57 d~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~ 135 (264)
T TIGR00446 57 EASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFG 135 (264)
T ss_pred CHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhh
Confidence 3333444455566678899999999999999999988756899999999999999999999999864 999999986542
Q ss_pred HHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 185 KALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 185 ~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
. . .++||.|++|++... ....++.+.++ |||||+||....
T Consensus 136 ~-~-----~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~---lkpgG~lvYstc 200 (264)
T TIGR00446 136 A-A-----VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDA---LKPGGVLVYSTC 200 (264)
T ss_pred h-h-----ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHh---cCCCCEEEEEeC
Confidence 2 1 357999999975221 12355555566 999999987644
No 58
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=1.8e-13 Score=119.79 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=78.1
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
...++.+|||||||+|..+..+++..| +++|+++|+++.+++.|++. +++++++|+.+..+ .++
T Consensus 26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~-------~~~ 89 (255)
T PRK14103 26 GAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP-------KPD 89 (255)
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC-------CCC
Confidence 345678999999999999999999876 68999999999999988752 37889999865421 478
Q ss_pred eeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 196 YDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 196 fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
||+|++.... .+....+..+.+. |||||.+++.
T Consensus 90 fD~v~~~~~l~~~~d~~~~l~~~~~~---LkpgG~l~~~ 125 (255)
T PRK14103 90 TDVVVSNAALQWVPEHADLLVRWVDE---LAPGSWIAVQ 125 (255)
T ss_pred ceEEEEehhhhhCCCHHHHHHHHHHh---CCCCcEEEEE
Confidence 9999997653 3345567777777 9999999985
No 59
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.46 E-value=3.9e-13 Score=121.42 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=83.0
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
....+++|||||||+|+.+..++...+ ..|+|+|+++.++..++...+..+...+++++.+++.+... .++
T Consensus 119 ~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~~~ 189 (322)
T PRK15068 119 SPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------LKA 189 (322)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------cCC
Confidence 334678999999999999999998643 47999999999887655544433334569999998865421 378
Q ss_pred eeEEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 196 YDFAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 196 fDlV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
||+|++.+...+ ....++.+.+. |+|||.++++....++.
T Consensus 190 FD~V~s~~vl~H~~dp~~~L~~l~~~---LkpGG~lvl~~~~i~~~ 232 (322)
T PRK15068 190 FDTVFSMGVLYHRRSPLDHLKQLKDQ---LVPGGELVLETLVIDGD 232 (322)
T ss_pred cCEEEECChhhccCCHHHHHHHHHHh---cCCCcEEEEEEEEecCC
Confidence 999998766433 45566777776 99999999987765543
No 60
>PRK01581 speE spermidine synthase; Validated
Probab=99.46 E-value=2.3e-12 Score=116.36 Aligned_cols=107 Identities=15% Similarity=0.220 Sum_probs=84.6
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHH-----HHhCC-CCcEEEEEcchhhHHHHHHh
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-----ERAGV-SHKVKIKHGLAADSLKALIL 189 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-----~~~g~-~~~v~~~~gd~~~~l~~l~~ 189 (282)
....+++||+||||.|+.+..+++.. +..+|++||+++++++.|++.. ....+ .++++++.+|+.+++...
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-- 223 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-- 223 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc--
Confidence 34678899999999999888888753 3579999999999999999732 11122 468999999999887654
Q ss_pred CCCCCceeEEEEcCCccc--------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 190 NGEASSYDFAFVDAEKRM--------YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 190 ~~~~~~fDlV~id~~~~~--------~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
.++||+||+|..... ..++++.+.+. |+|||++++.
T Consensus 224 ---~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~---LkPgGV~V~Q 267 (374)
T PRK01581 224 ---SSLYDVIIIDFPDPATELLSTLYTSELFARIATF---LTEDGAFVCQ 267 (374)
T ss_pred ---CCCccEEEEcCCCccccchhhhhHHHHHHHHHHh---cCCCcEEEEe
Confidence 578999999964221 25578888888 9999999886
No 61
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.46 E-value=2.3e-12 Score=120.87 Aligned_cols=158 Identities=18% Similarity=0.268 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 023411 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184 (282)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l 184 (282)
.....++...+...++.+|||+|||+|+.+..+++.++ +++|+++|+++++++.++++++..|+..++++..+|..+..
T Consensus 224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS 302 (426)
T ss_pred CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence 34556666667777889999999999999999999887 78999999999999999999999998744555777765322
Q ss_pred HHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcc
Q 023411 185 KALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKV 239 (282)
Q Consensus 185 ~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~ 239 (282)
... ..++||.|++|++... ....++.+.++ |||||.||....-+...
T Consensus 303 ~~~----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~---LkpgG~lvystcs~~~~- 374 (426)
T TIGR00563 303 QWA----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPL---LKTGGTLVYATCSVLPE- 374 (426)
T ss_pred ccc----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEEeCCCChh-
Confidence 100 1468999999865211 13456666666 99999999976644322
Q ss_pred cCCcCCChhhHHHHHHHHHhhhCCCeE--------------EEEeec---CCceEEEEE
Q 023411 240 ADQMVNDAKTISIRNFNKNLMEDERVS--------------ISMVPI---GDGMTICQK 281 (282)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~lp~---~~Gl~~~~k 281 (282)
++..-++.|++. .|++. ..++|- +||+-+|+-
T Consensus 375 -------Ene~~v~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l 423 (426)
T TIGR00563 375 -------ENSEQIKAFLQE---HPDFPFEKTGTPEQVRDGGLQILPHAEEGDGFFYAKL 423 (426)
T ss_pred -------hCHHHHHHHHHh---CCCCeeccCCCccccCCCcEEECCCCCCCCCeEEEEE
Confidence 233445666643 33332 234563 588888764
No 62
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.46 E-value=2.6e-13 Score=118.85 Aligned_cols=99 Identities=16% Similarity=0.258 Sum_probs=80.4
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
...++.+|||||||+|.++..+++..+ +++|+++|+++.+++.+++++ .+++++.+|+.+..+ .++
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~-------~~~ 93 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP-------PQA 93 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC-------CCC
Confidence 345678999999999999999998876 689999999999999998764 248899999865422 469
Q ss_pred eeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 196 YDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 196 fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
||+|++....+ +...+++.+.++ |+|||.+++.
T Consensus 94 fD~v~~~~~l~~~~d~~~~l~~~~~~---LkpgG~~~~~ 129 (258)
T PRK01683 94 LDLIFANASLQWLPDHLELFPRLVSL---LAPGGVLAVQ 129 (258)
T ss_pred ccEEEEccChhhCCCHHHHHHHHHHh---cCCCcEEEEE
Confidence 99999876633 455677777777 9999999985
No 63
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.46 E-value=7.8e-13 Score=121.14 Aligned_cols=110 Identities=10% Similarity=0.103 Sum_probs=84.7
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC--CcEEEEEcchhhHHHHHH
Q 023411 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAADSLKALI 188 (282)
Q Consensus 111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~--~~v~~~~gd~~~~l~~l~ 188 (282)
+...+......+|||+|||+|.+++.+++..| ..+|+++|+|+.+++.++++++.++.. .+++++.+|..+..+
T Consensus 220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--- 295 (378)
T PRK15001 220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--- 295 (378)
T ss_pred HHHhCCcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC---
Confidence 33333333446999999999999999999876 789999999999999999999888754 368999888764321
Q ss_pred hCCCCCceeEEEEcCCccc--------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 189 LNGEASSYDFAFVDAEKRM--------YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 189 ~~~~~~~fDlV~id~~~~~--------~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
.++||+|+++.+.+. ...++..+.+. |+|||.+.+-
T Consensus 296 ----~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~---LkpGG~L~iV 339 (378)
T PRK15001 296 ----PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRC---LKINGELYIV 339 (378)
T ss_pred ----CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHh---cccCCEEEEE
Confidence 468999999866321 23456666676 9999988774
No 64
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.46 E-value=6e-14 Score=106.27 Aligned_cols=102 Identities=30% Similarity=0.489 Sum_probs=50.6
Q ss_pred EEEcccccHHHHHHHHHCCCCC--EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411 124 IEVGVYTGYSSLAIALVLPESG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (282)
Q Consensus 124 LEIG~G~G~~t~~la~~~~~~~--~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i 201 (282)
||||+..|.++.++++.+++.+ +++++|..+. .+.+++.++..++.+++++++++..+.++.+. .++||++|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~----~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP----DGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH----H--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC----CCCEEEEEE
Confidence 7999999999999999887554 7999999985 44555666667788889999999999888774 379999999
Q ss_pred cCCc--cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 202 DAEK--RMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 202 d~~~--~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
|+.+ +.....++.+.+. |+|||++++||+
T Consensus 76 Dg~H~~~~~~~dl~~~~~~---l~~ggviv~dD~ 106 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPR---LAPGGVIVFDDY 106 (106)
T ss_dssp ES---HHHHHHHHHHHGGG---EEEEEEEEEE--
T ss_pred CCCCCHHHHHHHHHHHHHH---cCCCeEEEEeCc
Confidence 9874 4566678888888 999999999985
No 65
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.46 E-value=3.3e-12 Score=105.87 Aligned_cols=108 Identities=12% Similarity=0.225 Sum_probs=84.2
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (282)
Q Consensus 109 ~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~ 188 (282)
.++.......++++|||+|||+|.++..++... .+|+++|+++++++.++++++.++. +++++++|..+..
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---- 79 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV---- 79 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc----
Confidence 455555556677899999999999999999853 3899999999999999999988775 4889999986532
Q ss_pred hCCCCCceeEEEEcCCccc------------------------cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 189 LNGEASSYDFAFVDAEKRM------------------------YQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 189 ~~~~~~~fDlV~id~~~~~------------------------~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
.++||+|+++.+... ...+++.+.++ |+|||.+++-.
T Consensus 80 ----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---Lk~gG~~~~~~ 140 (179)
T TIGR00537 80 ----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEI---LKEGGRVQLIQ 140 (179)
T ss_pred ----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHh---hCCCCEEEEEE
Confidence 368999998754210 23456667777 99999988744
No 66
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.45 E-value=1.2e-12 Score=117.83 Aligned_cols=115 Identities=24% Similarity=0.369 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183 (282)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~ 183 (282)
.|.....+...+...++.+|||||||+|+.+..+++..+..++|+++|+++++++.|+++++..|.. +++++++|+.+.
T Consensus 65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~ 143 (322)
T PRK13943 65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYG 143 (322)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhc
Confidence 4444444444455667789999999999999999998764578999999999999999999998875 599999998654
Q ss_pred HHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 184 l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
.+. ..+||+|+++....+.+ ..+.+. |+|||.+++.
T Consensus 144 ~~~------~~~fD~Ii~~~g~~~ip---~~~~~~---LkpgG~Lvv~ 179 (322)
T PRK13943 144 VPE------FAPYDVIFVTVGVDEVP---ETWFTQ---LKEGGRVIVP 179 (322)
T ss_pred ccc------cCCccEEEECCchHHhH---HHHHHh---cCCCCEEEEE
Confidence 432 36799999987655433 345566 9999998874
No 67
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.45 E-value=2.5e-12 Score=117.75 Aligned_cols=117 Identities=24% Similarity=0.341 Sum_probs=96.9
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHHhCC
Q 023411 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNG 191 (282)
Q Consensus 114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~l~~~~ 191 (282)
+.....+++||++-|+||.++++.|.. ++ +||+||.|...+++|++|++.+|+. .++.++++|+.+++......+
T Consensus 212 l~~~~~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g 288 (393)
T COG1092 212 LGELAAGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRG 288 (393)
T ss_pred HhhhccCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcC
Confidence 444556899999999999999999975 44 9999999999999999999999985 568999999999998876543
Q ss_pred CCCceeEEEEcCC------------ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 192 EASSYDFAFVDAE------------KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 192 ~~~~fDlV~id~~------------~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
.+||+||+|++ ..+|......+.++ |+|||++++.+...+..
T Consensus 289 --~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~i---L~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 289 --EKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRL---LAPGGTLVTSSCSRHFS 342 (393)
T ss_pred --CcccEEEECCcccccCcccchhHHHHHHHHHHHHHHH---cCCCCEEEEEecCCccC
Confidence 69999999987 12355566666677 99999999987765554
No 68
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.45 E-value=1.7e-12 Score=120.15 Aligned_cols=110 Identities=19% Similarity=0.294 Sum_probs=87.4
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHHhCCCCC
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
...++++|||+|||+|.+++.++.. ...+|+++|+++.+++.|++|++.+++. ++++++++|+.+.+..+... .+
T Consensus 217 ~~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~--~~ 292 (396)
T PRK15128 217 RYVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR--GE 292 (396)
T ss_pred HhcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc--CC
Confidence 3456789999999999999876642 2359999999999999999999999986 47999999999887665322 35
Q ss_pred ceeEEEEcCCc------------cccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 195 SYDFAFVDAEK------------RMYQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 195 ~fDlV~id~~~------------~~~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
+||+||+|++. ..+..++..+.++ |+|||+++.-.
T Consensus 293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~l---Lk~gG~lv~~s 339 (396)
T PRK15128 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQL---LNPGGILLTFS 339 (396)
T ss_pred CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHH---cCCCeEEEEEe
Confidence 89999999773 1244455566677 99999998744
No 69
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.45 E-value=1.5e-12 Score=115.71 Aligned_cols=121 Identities=17% Similarity=0.294 Sum_probs=91.8
Q ss_pred cCHHHHHHHHHHHhh---cCC-CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411 103 VSPDQAQLLAMLVQI---LGA-QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (282)
Q Consensus 103 ~~~~~~~ll~~l~~~---~~~-~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g 178 (282)
..++...++...... ..+ .+|||+|||+|.+++.++...+ +.+|+++|+|+++++.|+++++.+++.++++++++
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~ 172 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQS 172 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 345556665554432 222 6999999999999999999876 68999999999999999999999998778999999
Q ss_pred chhhHHHHHHhCCCCCceeEEEEcCCcc----------------------------ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 179 LAADSLKALILNGEASSYDFAFVDAEKR----------------------------MYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 179 d~~~~l~~l~~~~~~~~fDlV~id~~~~----------------------------~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
|..+.++ ..+||+|+++.+.- .+..++..+.++ |+|||++++
T Consensus 173 d~~~~~~-------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~---L~~gG~l~~ 242 (284)
T TIGR00536 173 NLFEPLA-------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDY---LKPNGFLVC 242 (284)
T ss_pred chhccCc-------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHh---ccCCCEEEE
Confidence 9876332 24899999875410 133455555566 999999998
Q ss_pred eCCC
Q 023411 231 DNVL 234 (282)
Q Consensus 231 dd~~ 234 (282)
.-..
T Consensus 243 e~g~ 246 (284)
T TIGR00536 243 EIGN 246 (284)
T ss_pred EECc
Confidence 6443
No 70
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.45 E-value=2.5e-12 Score=114.56 Aligned_cols=104 Identities=21% Similarity=0.338 Sum_probs=85.6
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.++++|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++..+++.+++.+..++.... . .++||
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---~-----~~~fD 227 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---I-----EGKAD 227 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---c-----CCCce
Confidence 46789999999999999888764 3 3689999999999999999999999887788877763221 1 47899
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+|+++........++..+.++ |+|||.+++..+.
T Consensus 228 lVvan~~~~~l~~ll~~~~~~---LkpgG~li~sgi~ 261 (288)
T TIGR00406 228 VIVANILAEVIKELYPQFSRL---VKPGGWLILSGIL 261 (288)
T ss_pred EEEEecCHHHHHHHHHHHHHH---cCCCcEEEEEeCc
Confidence 999987766666777888888 9999999998764
No 71
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.44 E-value=8.5e-14 Score=102.26 Aligned_cols=92 Identities=22% Similarity=0.313 Sum_probs=72.6
Q ss_pred EEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcC
Q 023411 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 203 (282)
Q Consensus 124 LEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~ 203 (282)
||+|||+|..+..+++. + ..+|+++|+++++++.+++.... ..+.++++|..+. +.. +++||+|++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~~~-----~~sfD~v~~~~ 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDL-PFP-----DNSFDVVFSNS 68 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSS-SS------TT-EEEEEEES
T ss_pred CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhC-ccc-----ccccccccccc
Confidence 79999999999999997 3 68999999999999999987763 3466999998765 221 68999999876
Q ss_pred Cc---cccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 204 EK---RMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 204 ~~---~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
.. ++...+++++.++ |||||++++
T Consensus 69 ~~~~~~~~~~~l~e~~rv---Lk~gG~l~~ 95 (95)
T PF08241_consen 69 VLHHLEDPEAALREIYRV---LKPGGRLVI 95 (95)
T ss_dssp HGGGSSHHHHHHHHHHHH---EEEEEEEEE
T ss_pred ceeeccCHHHHHHHHHHH---cCcCeEEeC
Confidence 64 3456678888888 999999986
No 72
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=5.2e-12 Score=118.46 Aligned_cols=121 Identities=23% Similarity=0.320 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183 (282)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~ 183 (282)
......++..++...++.+|||+|||+|..+..+++..+ +++|+++|+++.+++.++++++..|+. ++++++|+.+.
T Consensus 229 Qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~ 305 (427)
T PRK10901 229 QDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDP 305 (427)
T ss_pred ECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccc
Confidence 444455566666777889999999999999999999875 489999999999999999999998875 68999998754
Q ss_pred HHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 184 LKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 184 l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
.... ..++||.|++|++... ....+..+.++ |+|||.+++....
T Consensus 306 ~~~~----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~---LkpGG~lvystcs 374 (427)
T PRK10901 306 AQWW----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPL---LKPGGTLLYATCS 374 (427)
T ss_pred hhhc----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHh---cCCCCEEEEEeCC
Confidence 2211 1368999999875221 12355566666 9999999986653
No 73
>PLN02366 spermidine synthase
Probab=99.44 E-value=6.1e-12 Score=112.60 Aligned_cols=107 Identities=23% Similarity=0.374 Sum_probs=86.7
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC--C-CCcEEEEEcchhhHHHHHHhCCCC
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~-~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
...+++||+||||.|..+.+++++ +...+|+.||+++++++.+++.+...+ + ++|++++.+|+.+.+.... .
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~----~ 163 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP----E 163 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc----C
Confidence 356889999999999999999986 434789999999999999999987532 2 4589999999988776431 3
Q ss_pred CceeEEEEcCCccc-------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 194 SSYDFAFVDAEKRM-------YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 194 ~~fDlV~id~~~~~-------~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
++||+||+|...+. ..++++.+.+. |+|||+++..
T Consensus 164 ~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~---L~pgGvlv~q 205 (308)
T PLN02366 164 GTYDAIIVDSSDPVGPAQELFEKPFFESVARA---LRPGGVVCTQ 205 (308)
T ss_pred CCCCEEEEcCCCCCCchhhhhHHHHHHHHHHh---cCCCcEEEEC
Confidence 68999999976321 34678888888 9999999875
No 74
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.44 E-value=4.8e-13 Score=100.35 Aligned_cols=93 Identities=23% Similarity=0.341 Sum_probs=71.7
Q ss_pred EEEEcccccHHHHHHHHHCCC--CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411 123 CIEVGVYTGYSSLAIALVLPE--SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (282)
Q Consensus 123 VLEIG~G~G~~t~~la~~~~~--~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~ 200 (282)
|||+|||+|..+..+++.++. ..+++++|+++++++.++++....+. +++++++|+.+. +.. .++||+|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~-----~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS-----DGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH-----SSSEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc-----CCCeeEEE
Confidence 799999999999999998732 37999999999999999999988666 589999999875 333 67999999
Q ss_pred Ec-CC-----ccccHHHHHHHHHhhcCCCCCc
Q 023411 201 VD-AE-----KRMYQEYFELLLQLLLQIRVGG 226 (282)
Q Consensus 201 id-~~-----~~~~~~~l~~~~~~~~~LkpgG 226 (282)
+. .. .+....+++.+.++ |+|||
T Consensus 73 ~~~~~~~~~~~~~~~~ll~~~~~~---l~pgG 101 (101)
T PF13649_consen 73 CSGLSLHHLSPEELEALLRRIARL---LRPGG 101 (101)
T ss_dssp E-TTGGGGSSHHHHHHHHHHHHHT---EEEEE
T ss_pred EcCCccCCCCHHHHHHHHHHHHHH---hCCCC
Confidence 94 32 22345567777777 99998
No 75
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.43 E-value=6.9e-12 Score=104.88 Aligned_cols=113 Identities=13% Similarity=0.052 Sum_probs=89.2
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
...+.+|||++||+|.+++.++++.. .+|++||.++.+++.++++++.++..++++++++|+.+.+..+... ...|
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~--~~~~ 122 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKK--PTFD 122 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhcc--CCCc
Confidence 34677999999999999999998643 4899999999999999999999998878999999998776543211 2358
Q ss_pred eEEEEcCCcc--ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 197 DFAFVDAEKR--MYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 197 DlV~id~~~~--~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
|+||.|++.. .+...++.+.. ..+|+++|++|++...
T Consensus 123 dvv~~DPPy~~~~~~~~l~~l~~-~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 123 NVIYLDPPFFNGALQALLELCEN-NWILEDTVLIVVEEDR 161 (189)
T ss_pred eEEEECcCCCCCcHHHHHHHHHH-CCCCCCCeEEEEEecC
Confidence 9999999854 24445555554 5679999999997543
No 76
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.43 E-value=2.2e-13 Score=112.93 Aligned_cols=102 Identities=16% Similarity=0.212 Sum_probs=85.7
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
+...++.+|.|+|||+|.+|..+++++| ++.++|+|-|++|++.|++... +++|..+|..++-+ +.
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp------~~~f~~aDl~~w~p-------~~ 91 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLP------DATFEEADLRTWKP-------EQ 91 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCC------CCceecccHhhcCC-------CC
Confidence 3456788999999999999999999998 8999999999999999977542 48999999987754 57
Q ss_pred ceeEEEEcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 195 SYDFAFVDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 195 ~fDlV~id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
..|++|.++. ..+....+..+... |.|||+|.++-.
T Consensus 92 ~~dllfaNAvlqWlpdH~~ll~rL~~~---L~Pgg~LAVQmP 130 (257)
T COG4106 92 PTDLLFANAVLQWLPDHPELLPRLVSQ---LAPGGVLAVQMP 130 (257)
T ss_pred ccchhhhhhhhhhccccHHHHHHHHHh---hCCCceEEEECC
Confidence 8999999876 45566677777777 999999998744
No 77
>PRK08317 hypothetical protein; Provisional
Probab=99.43 E-value=3.9e-12 Score=109.40 Aligned_cols=117 Identities=21% Similarity=0.275 Sum_probs=90.4
Q ss_pred HHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC
Q 023411 112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (282)
Q Consensus 112 ~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~ 191 (282)
.......++.+|||+|||+|.++..++..+++.++++++|+++.+++.++++.. ....+++++.+|+.+.. .
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~-~----- 83 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP-F----- 83 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC-C-----
Confidence 344455677899999999999999999987547899999999999999988733 23346899998875431 1
Q ss_pred CCCceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcc
Q 023411 192 EASSYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKV 239 (282)
Q Consensus 192 ~~~~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~ 239 (282)
..++||+|++.... .+....++.+.++ |+|||.+++....|....
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~---L~~gG~l~~~~~~~~~~~ 131 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPARALAEIARV---LRPGGRVVVLDTDWDTLV 131 (241)
T ss_pred CCCCceEEEEechhhccCCHHHHHHHHHHH---hcCCcEEEEEecCCCcee
Confidence 14789999987653 3456678888888 999999999877665543
No 78
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.43 E-value=8.9e-12 Score=108.81 Aligned_cols=98 Identities=22% Similarity=0.336 Sum_probs=78.5
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.++.+|||+|||+|..++.+++. + ..+|+++|+|+.+++.|++++..+++.+++.+..+ +.+||
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~--------------~~~fD 181 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG--------------DLKAD 181 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------------CCCcC
Confidence 47789999999999999887764 3 24799999999999999999998887554554322 12799
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+|+++........+++.+.++ |+|||++++.++.
T Consensus 182 ~Vvani~~~~~~~l~~~~~~~---LkpgG~lilsgi~ 215 (250)
T PRK00517 182 VIVANILANPLLELAPDLARL---LKPGGRLILSGIL 215 (250)
T ss_pred EEEEcCcHHHHHHHHHHHHHh---cCCCcEEEEEECc
Confidence 999987666566777888888 9999999998664
No 79
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.42 E-value=9.9e-12 Score=109.75 Aligned_cols=105 Identities=17% Similarity=0.241 Sum_probs=84.7
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC---CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV---SHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~---~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
..+++||+||||+|..+..+++..+ ..+++++|+++++++.+++++...+. ..+++++.+|+.+.+... .+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-----~~ 144 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-----EN 144 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-----CC
Confidence 4567999999999999998887643 46899999999999999998865431 357899999998877654 57
Q ss_pred ceeEEEEcCCcc-----c--cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 195 SYDFAFVDAEKR-----M--YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 195 ~fDlV~id~~~~-----~--~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+||+|++|.... . ...+++.+.++ |+|||++++.
T Consensus 145 ~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~---L~pgG~lv~~ 185 (270)
T TIGR00417 145 TFDVIIVDSTDPVGPAETLFTKEFYELLKKA---LNEDGIFVAQ 185 (270)
T ss_pred CccEEEEeCCCCCCcccchhHHHHHHHHHHH---hCCCcEEEEc
Confidence 999999987521 1 35677888888 9999999986
No 80
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.42 E-value=1.3e-12 Score=114.99 Aligned_cols=110 Identities=11% Similarity=0.179 Sum_probs=85.2
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (282)
Q Consensus 113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~ 192 (282)
..+...++.+|||||||+|..+..++... +++|+++|+++.+++.++++... .++++++++|+.+. + . .
T Consensus 46 ~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~-~----~ 114 (263)
T PTZ00098 46 SDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-D-F----P 114 (263)
T ss_pred HhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-C-C----C
Confidence 33456678899999999999999998754 47999999999999999987653 35699999998642 1 1 1
Q ss_pred CCceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411 193 ASSYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWH 236 (282)
Q Consensus 193 ~~~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~ 236 (282)
+++||+|++... ..+....++.+.++ |||||.+++.+....
T Consensus 115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~---LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKW---LKPNGILLITDYCAD 160 (263)
T ss_pred CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHH---cCCCcEEEEEEeccc
Confidence 478999998432 12455677788787 999999999887544
No 81
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.41 E-value=1.3e-12 Score=117.20 Aligned_cols=110 Identities=14% Similarity=0.102 Sum_probs=80.6
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
..++++|||||||+|+.+..++...+ ..|+|+|+|+.++..++..-+..+...++.+..+++.+... ..+|
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-------~~~F 189 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-------LYAF 189 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-------CCCc
Confidence 35678999999999999988887532 47999999999987654433333334568888888754321 3589
Q ss_pred eEEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 197 DFAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 197 DlV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
|+||+.+...+ ....++.+.+. |+|||.|+++.....|.
T Consensus 190 D~V~s~gvL~H~~dp~~~L~el~r~---LkpGG~Lvletl~i~g~ 231 (314)
T TIGR00452 190 DTVFSMGVLYHRKSPLEHLKQLKHQ---LVIKGELVLETLVIDGD 231 (314)
T ss_pred CEEEEcchhhccCCHHHHHHHHHHh---cCCCCEEEEEEEEecCc
Confidence 99998876433 44566777776 99999999987665543
No 82
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.41 E-value=3.4e-12 Score=126.36 Aligned_cols=111 Identities=21% Similarity=0.281 Sum_probs=90.5
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHHhCCC
Q 023411 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGE 192 (282)
Q Consensus 114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~l~~~~~ 192 (282)
+....++++|||+|||+|.++++++.. + ..+|++||+|+.+++.|++|++.+++. ++++++++|+.+.+...
T Consensus 533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~----- 605 (702)
T PRK11783 533 IGQMAKGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA----- 605 (702)
T ss_pred HHHhcCCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-----
Confidence 334456889999999999999999985 2 247999999999999999999999987 68999999998877654
Q ss_pred CCceeEEEEcCCc--------------cccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 193 ASSYDFAFVDAEK--------------RMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 193 ~~~fDlV~id~~~--------------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
.++||+||+|++. ..+...+..+.++ |+|||++++....
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~l---L~~gG~l~~~~~~ 658 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRL---LRPGGTLYFSNNK 658 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHH---cCCCCEEEEEeCC
Confidence 4689999999762 1234556666677 9999999887553
No 83
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.40 E-value=6.6e-14 Score=104.55 Aligned_cols=99 Identities=17% Similarity=0.203 Sum_probs=59.0
Q ss_pred EEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcC
Q 023411 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 203 (282)
Q Consensus 124 LEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~ 203 (282)
||||||+|..+..++...+ ..+++++|+|+.+++.+++++...+... ......+..+..... ..++||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYD----PPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC----C----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcc----cccccceehhhh
Confidence 7999999999999999985 7899999999999999999998876543 444444443332211 025999999887
Q ss_pred CccccHHHHHHHHHhhcCCCCCcEE
Q 023411 204 EKRMYQEYFELLLQLLLQIRVGGII 228 (282)
Q Consensus 204 ~~~~~~~~l~~~~~~~~~LkpgG~l 228 (282)
..++..+.-..+.++.++|+|||+|
T Consensus 75 vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 7554433333334444449999986
No 84
>PRK14968 putative methyltransferase; Provisional
Probab=99.40 E-value=5.8e-12 Score=104.70 Aligned_cols=110 Identities=16% Similarity=0.225 Sum_probs=84.9
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCc-EEEEEcchhhHHHHH
Q 023411 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLKAL 187 (282)
Q Consensus 109 ~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~-v~~~~gd~~~~l~~l 187 (282)
.++.......++++|||+|||+|.++..++.. +.+++++|+++++++.+++++..+++.++ +.++++|..+.+.
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-- 87 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR-- 87 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence 33444444467789999999999999999986 47999999999999999999998887655 8899998765332
Q ss_pred HhCCCCCceeEEEEcCCccc------------------------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 188 ILNGEASSYDFAFVDAEKRM------------------------YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 188 ~~~~~~~~fDlV~id~~~~~------------------------~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
..+||+|+.+.+... ...+++.+.++ |+|||.+++-
T Consensus 88 -----~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---Lk~gG~~~~~ 147 (188)
T PRK14968 88 -----GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRY---LKPGGRILLL 147 (188)
T ss_pred -----ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHh---cCCCeEEEEE
Confidence 358999998754211 23456777777 9999988763
No 85
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.40 E-value=3.2e-12 Score=114.84 Aligned_cols=115 Identities=15% Similarity=0.103 Sum_probs=91.5
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh
Q 023411 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189 (282)
Q Consensus 110 ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~ 189 (282)
.+.......+..+|||||||+|..+..+++..| +.+++++|. |++++.+++++...|+.++++++.+|+.+..
T Consensus 140 ~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~----- 212 (306)
T TIGR02716 140 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES----- 212 (306)
T ss_pred HHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-----
Confidence 344444556778999999999999999999987 789999998 7899999999999999999999999987521
Q ss_pred CCCCCceeEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411 190 NGEASSYDFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNVLWHG 237 (282)
Q Consensus 190 ~~~~~~fDlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g 237 (282)
...+|+|++....++ ....++.+.+. |+|||.+++.+..++.
T Consensus 213 ---~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~---L~pgG~l~i~d~~~~~ 259 (306)
T TIGR02716 213 ---YPEADAVLFCRILYSANEQLSTIMCKKAFDA---MRSGGRLLILDMVIDD 259 (306)
T ss_pred ---CCCCCEEEeEhhhhcCChHHHHHHHHHHHHh---cCCCCEEEEEEeccCC
Confidence 134699887654332 23467777777 9999999998887654
No 86
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.40 E-value=3e-12 Score=122.23 Aligned_cols=101 Identities=20% Similarity=0.320 Sum_probs=81.5
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
+.+|||+|||+|.+++.++...+ +++|+++|+|+.+++.|++++..+++.++++++++|..+.++ .++||+|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~-------~~~fDlI 210 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE-------KQKFDFI 210 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc-------CCCccEE
Confidence 46899999999999999998876 689999999999999999999999988889999999865322 3689999
Q ss_pred EEcCCcc-----------------------------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 200 FVDAEKR-----------------------------MYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 200 ~id~~~~-----------------------------~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+++.+.- .+..+++.+.++ |+|||.+++.
T Consensus 211 vsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~---L~~gG~l~lE 268 (506)
T PRK01544 211 VSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQF---LKPNGKIILE 268 (506)
T ss_pred EECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHh---ccCCCEEEEE
Confidence 9875410 122234445555 9999999986
No 87
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.39 E-value=7.1e-12 Score=111.21 Aligned_cols=135 Identities=18% Similarity=0.282 Sum_probs=95.6
Q ss_pred HHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 023411 107 QAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185 (282)
Q Consensus 107 ~~~ll~~l~~~-~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~ 185 (282)
+...+..+... .++++|||+|||+|..++..++. + ..+|+++|++|.+++.|++|++.+++.+++.+. ...+..
T Consensus 148 T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~- 222 (295)
T PF06325_consen 148 TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLV- 222 (295)
T ss_dssp HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTC-
T ss_pred HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecccc-
Confidence 33344444443 46789999999999999988874 3 368999999999999999999999999877663 111111
Q ss_pred HHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCe
Q 023411 186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERV 265 (282)
Q Consensus 186 ~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (282)
.++||+|+.+-...-.......+.++ |+|||++++..++-... .++.+.+. . ++
T Consensus 223 -------~~~~dlvvANI~~~vL~~l~~~~~~~---l~~~G~lIlSGIl~~~~--------------~~v~~a~~-~-g~ 276 (295)
T PF06325_consen 223 -------EGKFDLVVANILADVLLELAPDIASL---LKPGGYLILSGILEEQE--------------DEVIEAYK-Q-GF 276 (295)
T ss_dssp -------CS-EEEEEEES-HHHHHHHHHHCHHH---EEEEEEEEEEEEEGGGH--------------HHHHHHHH-T-TE
T ss_pred -------cccCCEEEECCCHHHHHHHHHHHHHh---hCCCCEEEEccccHHHH--------------HHHHHHHH-C-CC
Confidence 48999999988776666777777777 99999999987764332 34444443 3 77
Q ss_pred EEEEeec
Q 023411 266 SISMVPI 272 (282)
Q Consensus 266 ~~~~lp~ 272 (282)
.......
T Consensus 277 ~~~~~~~ 283 (295)
T PF06325_consen 277 ELVEERE 283 (295)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 7765443
No 88
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.38 E-value=9.6e-12 Score=108.23 Aligned_cols=116 Identities=22% Similarity=0.387 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHhhc--CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411 104 SPDQAQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (282)
Q Consensus 104 ~~~~~~ll~~l~~~~--~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (282)
.+....++..+.... .+.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...++. +++++++|+.
T Consensus 70 ~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~ 147 (251)
T TIGR03534 70 RPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWF 147 (251)
T ss_pred CCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence 344445555444432 345899999999999999999876 679999999999999999999988886 5999999987
Q ss_pred hHHHHHHhCCCCCceeEEEEcCCccc-----------------------------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 182 DSLKALILNGEASSYDFAFVDAEKRM-----------------------------YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~~~~-----------------------------~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+..+ .++||+|+++.+... +..+++.+.++ |+|||.+++.
T Consensus 148 ~~~~-------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~---L~~gG~~~~~ 216 (251)
T TIGR03534 148 EPLP-------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRL---LKPGGWLLLE 216 (251)
T ss_pred ccCc-------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHh---cccCCEEEEE
Confidence 6332 478999999754211 12345566666 9999999985
No 89
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.38 E-value=8.2e-12 Score=105.72 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=78.2
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
...++.+|||+|||+|..+..+++..+ +.+++|+|+|+++++.|+++.. +++++++|+.+ +.. +++
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~--~~~-----~~s 105 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD--PFK-----DNF 105 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC--CCC-----CCC
Confidence 345677999999999999999998775 6899999999999999987642 36788888765 211 579
Q ss_pred eeEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcc
Q 023411 196 YDFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKV 239 (282)
Q Consensus 196 fDlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~ 239 (282)
||+|++.....+ ....++.+.++ + ++++++.+..-+..+
T Consensus 106 fD~V~~~~vL~hl~p~~~~~~l~el~r~---~--~~~v~i~e~~~~~~~ 149 (204)
T TIGR03587 106 FDLVLTKGVLIHINPDNLPTAYRELYRC---S--NRYILIAEYYNPSPV 149 (204)
T ss_pred EEEEEECChhhhCCHHHHHHHHHHHHhh---c--CcEEEEEEeeCCCce
Confidence 999998776433 23445555554 5 568888777655543
No 90
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.38 E-value=4e-12 Score=109.53 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=87.0
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
..++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+...+++++.+|+.+... ..++|
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~ 122 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNSF 122 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCCc
Confidence 345679999999999999999998764689999999999999999998876666779999999865421 14789
Q ss_pred eEEEEcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 197 DFAFVDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 197 DlV~id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
|+|++... ..+....++.+.++ |+|||.+++-+.
T Consensus 123 D~I~~~~~l~~~~~~~~~l~~~~~~---L~~gG~li~~~~ 159 (239)
T PRK00216 123 DAVTIAFGLRNVPDIDKALREMYRV---LKPGGRLVILEF 159 (239)
T ss_pred cEEEEecccccCCCHHHHHHHHHHh---ccCCcEEEEEEe
Confidence 99998654 33456677777777 999999887554
No 91
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.38 E-value=8.4e-12 Score=114.09 Aligned_cols=104 Identities=21% Similarity=0.221 Sum_probs=86.3
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
..+..+||||||+|.+++.+|...| +..++|+|+++.+++.+.+++...++.+ +.++++|+.+.+..+. ++++|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~----~~s~D 194 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLP----SNSVE 194 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCC----CCcee
Confidence 3456899999999999999999986 7899999999999999999999999875 9999999976554332 58999
Q ss_pred EEEEcCC---ccc------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411 198 FAFVDAE---KRM------YQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 198 lV~id~~---~~~------~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
.|++..+ ... ...+++.+.++ |+|||.+.+
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~Rv---LkpGG~l~l 233 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRV---LKPGGTLEL 233 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHH---cCCCcEEEE
Confidence 9998533 111 25678888888 999998877
No 92
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.37 E-value=4.6e-12 Score=112.84 Aligned_cols=98 Identities=17% Similarity=0.245 Sum_probs=79.4
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.++.+|||+|||+|..+.++++. +.+|+++|+|+.+++.++++.+..++ ++++..+|..+.. + .++||
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~-----~~~fD 186 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--I-----QEEYD 186 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--c-----cCCcc
Confidence 45679999999999999999974 57999999999999999999988887 4888888875421 1 47899
Q ss_pred EEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 198 FAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 198 lV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
+|++.... .....+++.+.++ |+|||++++
T Consensus 187 ~I~~~~vl~~l~~~~~~~~l~~~~~~---LkpgG~~l~ 221 (287)
T PRK12335 187 FILSTVVLMFLNRERIPAIIKNMQEH---TNPGGYNLI 221 (287)
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHh---cCCCcEEEE
Confidence 99986542 3456678888888 999998655
No 93
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=3e-12 Score=112.82 Aligned_cols=105 Identities=19% Similarity=0.279 Sum_probs=82.7
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.++++|||+|||+|..++..++-- ..+++|+|++|.+++.+++|+..+++...++....+..+... .++||
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~-------~~~~D 231 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE-------NGPFD 231 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc-------cCccc
Confidence 488999999999999999988743 367999999999999999999999987533333333332221 36999
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+|+++--.+-.......+.++ ++|||++++..++
T Consensus 232 vIVANILA~vl~~La~~~~~~---lkpgg~lIlSGIl 265 (300)
T COG2264 232 VIVANILAEVLVELAPDIKRL---LKPGGRLILSGIL 265 (300)
T ss_pred EEEehhhHHHHHHHHHHHHHH---cCCCceEEEEeeh
Confidence 999987655556677777777 9999999998765
No 94
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.37 E-value=1.2e-11 Score=102.86 Aligned_cols=129 Identities=21% Similarity=0.293 Sum_probs=95.9
Q ss_pred CccCHHHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411 101 MQVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (282)
Q Consensus 101 ~~~~~~~~~ll~~l~~~-~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd 179 (282)
|..+.....+...+... ..+.+|||+.||+|..++..+++- ..+|+.||.++..+...++|++..+..++++++.+|
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d 100 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGD 100 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESS
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccC
Confidence 44455555556666655 688899999999999999888763 269999999999999999999999999889999999
Q ss_pred hhhHHHHHHhCCCCCceeEEEEcCCcccc---HHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 180 AADSLKALILNGEASSYDFAFVDAEKRMY---QEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 180 ~~~~l~~l~~~~~~~~fDlV~id~~~~~~---~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+...+...... ..+||+||+|++.... ...++.+.+ ..+|+++|+++++.-.
T Consensus 101 ~~~~l~~~~~~--~~~fDiIflDPPY~~~~~~~~~l~~l~~-~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 101 AFKFLLKLAKK--GEKFDIIFLDPPYAKGLYYEELLELLAE-NNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HHHHHHHHHHC--TS-EEEEEE--STTSCHHHHHHHHHHHH-TTSEEEEEEEEEEEET
T ss_pred HHHHHHhhccc--CCCceEEEECCCcccchHHHHHHHHHHH-CCCCCCCEEEEEEecC
Confidence 98887766433 4899999999985543 456666654 4679999999997543
No 95
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.37 E-value=3.1e-12 Score=121.72 Aligned_cols=109 Identities=14% Similarity=0.193 Sum_probs=86.0
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
+...++.+|||||||+|..+..++... +++|+|+|+|+++++.|+++.. +...+++++++|..+.. ++ ++
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--~~----~~ 331 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--YP----DN 331 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--CC----CC
Confidence 345567899999999999999999875 4799999999999999998765 44557999999986531 11 46
Q ss_pred ceeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411 195 SYDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLWH 236 (282)
Q Consensus 195 ~fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~ 236 (282)
+||+|++..... +...+++.+.++ |+|||.+++.+....
T Consensus 332 ~fD~I~s~~~l~h~~d~~~~l~~~~r~---LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 332 SFDVIYSRDTILHIQDKPALFRSFFKW---LKPGGKVLISDYCRS 373 (475)
T ss_pred CEEEEEECCcccccCCHHHHHHHHHHH---cCCCeEEEEEEeccC
Confidence 899999875533 345677777777 999999999876543
No 96
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=99.37 E-value=4.4e-11 Score=99.70 Aligned_cols=155 Identities=23% Similarity=0.318 Sum_probs=118.3
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccH--HHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGY--SSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (282)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~--~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (282)
.|..++|+..++.-...+.++|+.|+.|. .|+.|+-+. ..+|++++|-.+++-+...++.+...++.+.++|+.|+.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 56788999999999999999999776543 345544332 237899999999998888899999889888789999986
Q ss_pred h-hHHHHHHhCCCCCceeEEEEcCCccccH-HHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHH
Q 023411 181 A-DSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKN 258 (282)
Q Consensus 181 ~-~~l~~l~~~~~~~~fDlV~id~~~~~~~-~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~ 258 (282)
. +.++.+ ..+|++++|+..+++. ..|+.+. + =+.|.++|..|.+..+. .. -.|...
T Consensus 106 ~e~~~~~~------~~iDF~vVDc~~~d~~~~vl~~~~-~---~~~GaVVV~~Na~~r~~-~~-----------~~w~~~ 163 (218)
T PF07279_consen 106 PEEVMPGL------KGIDFVVVDCKREDFAARVLRAAK-L---SPRGAVVVCYNAFSRST-NG-----------FSWRSV 163 (218)
T ss_pred HHHHHhhc------cCCCEEEEeCCchhHHHHHHHHhc-c---CCCceEEEEeccccCCc-CC-----------ccHHHh
Confidence 5 456665 6899999999987776 5555432 2 34566777788765432 11 136666
Q ss_pred hhhCCCeEEEEeecCCceEEEE
Q 023411 259 LMEDERVSISMVPIGDGMTICQ 280 (282)
Q Consensus 259 ~~~~~~~~~~~lp~~~Gl~~~~ 280 (282)
++..+.+.+++||+|.||.+++
T Consensus 164 ~~~~r~Vrsv~LPIG~GleVt~ 185 (218)
T PF07279_consen 164 LRGRRVVRSVFLPIGKGLEVTR 185 (218)
T ss_pred cCCCCceeEEEeccCCCeEEEE
Confidence 7778889999999999999987
No 97
>PRK06922 hypothetical protein; Provisional
Probab=99.35 E-value=1e-11 Score=119.22 Aligned_cols=113 Identities=13% Similarity=0.180 Sum_probs=86.1
Q ss_pred HHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC
Q 023411 112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (282)
Q Consensus 112 ~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~ 191 (282)
..+....++.+|||||||+|..+..+++..| +++|+|+|+++.+++.|+++....+ .+++++++|+.+....+.
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fe--- 484 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFE--- 484 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccC---
Confidence 3445556788999999999999999998876 7899999999999999998876544 358899999875321121
Q ss_pred CCCceeEEEEcCCcc----------------ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 192 EASSYDFAFVDAEKR----------------MYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 192 ~~~~fDlV~id~~~~----------------~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+++||+|++....+ .....++.+.++ |||||.+++.+..
T Consensus 485 -deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RV---LKPGGrLII~D~v 539 (677)
T PRK06922 485 -KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEV---LKPGGRIIIRDGI 539 (677)
T ss_pred -CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHH---cCCCcEEEEEeCc
Confidence 57899998754321 234567777777 9999999996653
No 98
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.35 E-value=9.3e-12 Score=112.98 Aligned_cols=117 Identities=20% Similarity=0.277 Sum_probs=95.2
Q ss_pred ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (282)
Q Consensus 102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (282)
.+.+..+..+..++...++.+|||+|||+|.+++.++.. +.+++|+|+++.+++.++++++.+|+.+ ++++++|+.
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~ 240 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDAT 240 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchh
Confidence 567777888888888888899999999999998887653 5799999999999999999999999887 899999997
Q ss_pred hHHHHHHhCCCCCceeEEEEcCCcc------------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 182 DSLKALILNGEASSYDFAFVDAEKR------------MYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~~~------------~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+. +.. .++||+|++|++.. .+..+++.+.++ |+|||.+++-
T Consensus 241 ~l-~~~-----~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~---Lk~gG~lv~~ 293 (329)
T TIGR01177 241 KL-PLS-----SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEV---LKSEGWIVYA 293 (329)
T ss_pred cC-Ccc-----cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHH---ccCCcEEEEE
Confidence 64 211 47899999986521 145667777777 9999998873
No 99
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.35 E-value=1.1e-11 Score=112.80 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 023411 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184 (282)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l 184 (282)
.....++..+. .....+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++++.+++. .+++.+|..+.
T Consensus 183 ~gt~lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~- 257 (342)
T PRK09489 183 VGSQLLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD- 257 (342)
T ss_pred HHHHHHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-
Confidence 33344444343 33456899999999999999999876 679999999999999999999998875 46777776542
Q ss_pred HHHHhCCCCCceeEEEEcCCccc--------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411 185 KALILNGEASSYDFAFVDAEKRM--------YQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 185 ~~l~~~~~~~~fDlV~id~~~~~--------~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
. .++||+|+++.+.+. ...++..+.+. |+|||.+++
T Consensus 258 --~-----~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~---LkpgG~L~i 301 (342)
T PRK09489 258 --I-----KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRH---LNSGGELRI 301 (342)
T ss_pred --c-----CCCccEEEECCCccCCccccHHHHHHHHHHHHHh---cCcCCEEEE
Confidence 2 478999999876332 34566777777 999998866
No 100
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.35 E-value=8.5e-12 Score=103.80 Aligned_cols=104 Identities=18% Similarity=0.255 Sum_probs=80.7
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
++..++.++||+|||.|..++++|+. +..|+++|.|+..++.+++..+..+++ ++..+.|..+... .+
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~-------~~ 93 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF-------PE 93 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS--------TT
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc-------cC
Confidence 45557789999999999999999985 579999999999999999988888876 8999988765422 47
Q ss_pred ceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 195 SYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 195 ~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
.||+|+.... .+..+..++.+... ++|||++++...
T Consensus 94 ~yD~I~st~v~~fL~~~~~~~i~~~m~~~---~~pGG~~li~~~ 134 (192)
T PF03848_consen 94 EYDFIVSTVVFMFLQRELRPQIIENMKAA---TKPGGYNLIVTF 134 (192)
T ss_dssp TEEEEEEESSGGGS-GGGHHHHHHHHHHT---EEEEEEEEEEEE
T ss_pred CcCEEEEEEEeccCCHHHHHHHHHHHHhh---cCCcEEEEEEEe
Confidence 8999987533 44566778888888 999999888543
No 101
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.34 E-value=1.8e-11 Score=112.72 Aligned_cols=95 Identities=20% Similarity=0.297 Sum_probs=75.4
Q ss_pred ccCHHHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411 102 QVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (282)
Q Consensus 102 ~~~~~~~~ll~~l~~~-~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (282)
...++...++..+... .+..+|||+|||+|..++.++...+ +.+++++|+|+++++.|+++++.++. +++++++|.
T Consensus 233 IPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl 309 (423)
T PRK14966 233 IPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSW 309 (423)
T ss_pred CCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcch
Confidence 4456667777766543 4567999999999999999998766 68999999999999999999988764 699999998
Q ss_pred hhHHHHHHhCCCCCceeEEEEcCC
Q 023411 181 ADSLKALILNGEASSYDFAFVDAE 204 (282)
Q Consensus 181 ~~~l~~l~~~~~~~~fDlV~id~~ 204 (282)
.+..... .++||+|+++++
T Consensus 310 ~e~~l~~-----~~~FDLIVSNPP 328 (423)
T PRK14966 310 FDTDMPS-----EGKWDIIVSNPP 328 (423)
T ss_pred hcccccc-----CCCccEEEECCC
Confidence 6531101 357999999875
No 102
>PRK14967 putative methyltransferase; Provisional
Probab=99.34 E-value=2.5e-11 Score=104.20 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=77.8
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.+..+|||+|||+|..+..++.. + ..+++++|+++.+++.+++++..++. +++++++|+.+.++ .++||
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~-------~~~fD 103 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE-------FRPFD 103 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc-------CCCee
Confidence 45679999999999999998874 3 35999999999999999999988776 48899999865432 47899
Q ss_pred EEEEcCCccc------------------------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411 198 FAFVDAEKRM------------------------YQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 198 lV~id~~~~~------------------------~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
+|+++.+... ...+++.+.++ |+|||.+++
T Consensus 104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---Lk~gG~l~~ 157 (223)
T PRK14967 104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPAL---LAPGGSLLL 157 (223)
T ss_pred EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHh---cCCCcEEEE
Confidence 9999854111 22345556666 999999986
No 103
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=1.7e-11 Score=108.19 Aligned_cols=116 Identities=19% Similarity=0.368 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHH---hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411 104 SPDQAQLLAMLV---QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (282)
Q Consensus 104 ~~~~~~ll~~l~---~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (282)
.++...++..+. ...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++. .....+++++++|.
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~ 167 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDW 167 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccc
Confidence 444444555444 234677999999999999999999886 6899999999999999999988 44455799999998
Q ss_pred hhHHHHHHhCCCCCceeEEEEcCCcc-----------------------------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 181 ADSLKALILNGEASSYDFAFVDAEKR-----------------------------MYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 181 ~~~l~~l~~~~~~~~fDlV~id~~~~-----------------------------~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
.+..+ .++||+|+++.+.. .+..+++.+.++ |+|||.+++.
T Consensus 168 ~~~~~-------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~---Lk~gG~l~~e 237 (275)
T PRK09328 168 FEPLP-------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY---LKPGGWLLLE 237 (275)
T ss_pred cCcCC-------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh---cccCCEEEEE
Confidence 54321 37899999875421 123345555566 9999999984
No 104
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.33 E-value=2.5e-11 Score=106.00 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=77.4
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
+.+|||+|||+|.+++.++...+ +.+++++|+|+.+++.|++|++.++ ++++++|..+.++... .++||+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~----~~~fDlV 157 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL----RGRVDIL 157 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc----CCCEeEE
Confidence 45899999999999999998876 5799999999999999999998765 4789999876543221 3679999
Q ss_pred EEcCCccc-----------------------------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 200 FVDAEKRM-----------------------------YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 200 ~id~~~~~-----------------------------~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
++|.+.-. +..+++.+.++ |+|||.+++.
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~---L~~gG~l~l~ 215 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDW---LAPGGHLLVE 215 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHh---cCCCCEEEEE
Confidence 99875210 12344444455 9999999985
No 105
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.33 E-value=7.5e-12 Score=107.70 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=81.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
.+.+|||+|||+|.++..+++..+ ..+++++|++++++..+++... .+++++.+|..+... . .++||+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~-~-----~~~fD~ 101 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPL-E-----DSSFDL 101 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCC-C-----CCceeE
Confidence 457999999999999999999876 6789999999999988887654 358899999865421 1 478999
Q ss_pred EEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411 199 AFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLW 235 (282)
Q Consensus 199 V~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~ 235 (282)
|++....+ +....+..+.++ |+|||.+++.....
T Consensus 102 vi~~~~l~~~~~~~~~l~~~~~~---L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 102 IVSNLALQWCDDLSQALSELARV---LKPGGLLAFSTFGP 138 (240)
T ss_pred EEEhhhhhhccCHHHHHHHHHHH---cCCCcEEEEEeCCc
Confidence 99876633 455677777777 99999999975543
No 106
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.32 E-value=5e-11 Score=107.55 Aligned_cols=120 Identities=21% Similarity=0.147 Sum_probs=89.1
Q ss_pred CCCccCHHHHHHHHHH----HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEE
Q 023411 99 SQMQVSPDQAQLLAML----VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174 (282)
Q Consensus 99 ~~~~~~~~~~~ll~~l----~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~ 174 (282)
+..+.++...+.+... +...++.+|||+|||+|.+++.+++. +.+|+++|+++++++.|+++++.+++. +++
T Consensus 149 sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~-~v~ 224 (315)
T PRK03522 149 SFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLT-NVQ 224 (315)
T ss_pred eeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceE
Confidence 3445555554444332 22235689999999999999999983 479999999999999999999999984 699
Q ss_pred EEEcchhhHHHHHHhCCCCCceeEEEEcCCcccc-HHHHHHHHHhhcCCCCCcEEEEe
Q 023411 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMY-QEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 175 ~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~-~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
++++|+.+..... .+.||+|++|++.... ....+.+.+ ++|++++.+.
T Consensus 225 ~~~~D~~~~~~~~-----~~~~D~Vv~dPPr~G~~~~~~~~l~~----~~~~~ivyvs 273 (315)
T PRK03522 225 FQALDSTQFATAQ-----GEVPDLVLVNPPRRGIGKELCDYLSQ----MAPRFILYSS 273 (315)
T ss_pred EEEcCHHHHHHhc-----CCCCeEEEECCCCCCccHHHHHHHHH----cCCCeEEEEE
Confidence 9999998765432 3579999999885543 333344443 6788887774
No 107
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.3e-11 Score=107.75 Aligned_cols=121 Identities=19% Similarity=0.372 Sum_probs=90.5
Q ss_pred CccCHHHHHHHHHHH-hhcC-CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411 101 MQVSPDQAQLLAMLV-QILG-AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (282)
Q Consensus 101 ~~~~~~~~~ll~~l~-~~~~-~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g 178 (282)
...++++..++..+. .... ..+|||+|||+|..++.++...+ ..+|+++|+|+++++.|++|...+++ .++.++++
T Consensus 90 liPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~ 167 (280)
T COG2890 90 LIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQS 167 (280)
T ss_pred eecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEee
Confidence 345666776776643 2211 22799999999999999999987 68999999999999999999999998 56777777
Q ss_pred chhhHHHHHHhCCCCCceeEEEEcCCc---c-------------------------ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 179 LAADSLKALILNGEASSYDFAFVDAEK---R-------------------------MYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 179 d~~~~l~~l~~~~~~~~fDlV~id~~~---~-------------------------~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
|..+.+ .++||+|+++++. . .+..+++.+... |+|||++++
T Consensus 168 dlf~~~--------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~---l~~~g~l~l 236 (280)
T COG2890 168 DLFEPL--------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDI---LKPGGVLIL 236 (280)
T ss_pred eccccc--------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHH---cCCCcEEEE
Confidence 665432 4699999987651 1 133455556666 999999999
Q ss_pred eCCC
Q 023411 231 DNVL 234 (282)
Q Consensus 231 dd~~ 234 (282)
.--.
T Consensus 237 e~g~ 240 (280)
T COG2890 237 EIGL 240 (280)
T ss_pred EECC
Confidence 6443
No 108
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.32 E-value=2.1e-11 Score=107.55 Aligned_cols=109 Identities=23% Similarity=0.332 Sum_probs=81.9
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
...+++||++-|.+|.++++.+..- ..+|++||.|..+++++++|+..+|++ ++++++.+|+.+.+..+.. .++
T Consensus 121 ~~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~---~~~ 195 (286)
T PF10672_consen 121 YAKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK---GGR 195 (286)
T ss_dssp HCTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH---TT-
T ss_pred HcCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc---CCC
Confidence 3467899999999999999887642 248999999999999999999999986 6899999999998876533 469
Q ss_pred eeEEEEcCC---------ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 196 YDFAFVDAE---------KRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 196 fDlV~id~~---------~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
||+|++|++ ..+|...+..+.++ |+|||+|++-..
T Consensus 196 fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~l---l~~gG~l~~~sc 239 (286)
T PF10672_consen 196 FDLIILDPPSFAKSKFDLERDYKKLLRRAMKL---LKPGGLLLTCSC 239 (286)
T ss_dssp EEEEEE--SSEESSTCEHHHHHHHHHHHHHHT---EEEEEEEEEEE-
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHh---cCCCCEEEEEcC
Confidence 999999987 22355566666677 999999876433
No 109
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.31 E-value=1.5e-11 Score=104.82 Aligned_cols=106 Identities=22% Similarity=0.281 Sum_probs=82.9
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
..++.+|||+|||+|..+..+++..+..++++++|+++.+++.++++.. ...+++++.+|+.+... ..++|
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~------~~~~~ 107 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF------EDNSF 107 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC------CCCcE
Confidence 3467899999999999999999988644799999999999999998875 34568999999876421 14689
Q ss_pred eEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 197 DFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 197 DlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
|+|++.... .+....++.+.++ |+|||.+++-+..
T Consensus 108 D~i~~~~~~~~~~~~~~~l~~~~~~---L~~gG~l~~~~~~ 145 (223)
T TIGR01934 108 DAVTIAFGLRNVTDIQKALREMYRV---LKPGGRLVILEFS 145 (223)
T ss_pred EEEEEeeeeCCcccHHHHHHHHHHH---cCCCcEEEEEEec
Confidence 999886543 3455567777777 9999999886553
No 110
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.31 E-value=1e-11 Score=108.38 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=78.6
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (282)
Q Consensus 113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~ 192 (282)
......++.+|||+|||+|..+..++.. +.+|+++|+++.+++.++++.. ...++++|+.+. +..
T Consensus 36 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~~~----- 100 (251)
T PRK10258 36 AMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-PLA----- 100 (251)
T ss_pred HhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-cCC-----
Confidence 3333345679999999999999888763 5799999999999999887643 246788888553 211
Q ss_pred CCceeEEEEcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 193 ASSYDFAFVDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 193 ~~~fDlV~id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+++||+|++... ..+....+..+.++ |+|||.+++....
T Consensus 101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~---Lk~gG~l~~~~~~ 142 (251)
T PRK10258 101 TATFDLAWSNLAVQWCGNLSTALRELYRV---VRPGGVVAFTTLV 142 (251)
T ss_pred CCcEEEEEECchhhhcCCHHHHHHHHHHH---cCCCeEEEEEeCC
Confidence 468999998754 34556677888888 9999999987543
No 111
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.30 E-value=2.4e-12 Score=109.88 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=77.9
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC-----cEEEEEcchhhHHHHHHhCCCCC
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-----~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
+++|||+|||+|..+..||+. ++.|+|||+++++++.|++........+ ++++.+.+..+. .+
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---------~~ 157 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---------TG 157 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---------cc
Confidence 468999999999999999985 5899999999999999999954433333 255555555332 47
Q ss_pred ceeEEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 195 SYDFAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 195 ~fDlV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
.||.|++--..+| ..++++.+.++ |+|||.+++..+-
T Consensus 158 ~fDaVvcsevleHV~dp~~~l~~l~~~---lkP~G~lfittin 197 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDPQEFLNCLSAL---LKPNGRLFITTIN 197 (282)
T ss_pred ccceeeeHHHHHHHhCHHHHHHHHHHH---hCCCCceEeeehh
Confidence 7999999877555 45567777777 9999999998775
No 112
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.29 E-value=2.1e-11 Score=98.45 Aligned_cols=106 Identities=22% Similarity=0.256 Sum_probs=74.9
Q ss_pred HHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 023411 107 QAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185 (282)
Q Consensus 107 ~~~ll~~l~~-~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~ 185 (282)
...++..+.. ..+..+|||||||+|.++..+++. +.+++++|+++.+++. ..+.....+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~ 74 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPF 74 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHC
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhc
Confidence 3445555654 567889999999999999999764 3599999999998876 113333322222211
Q ss_pred HHHhCCCCCceeEEEEcCCccccH---HHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411 186 ALILNGEASSYDFAFVDAEKRMYQ---EYFELLLQLLLQIRVGGIIVIDNVLW 235 (282)
Q Consensus 186 ~l~~~~~~~~fDlV~id~~~~~~~---~~l~~~~~~~~~LkpgG~lv~dd~~~ 235 (282)
. .++||+|++....++.. .+++.+.++ |||||++++.....
T Consensus 75 -~-----~~~fD~i~~~~~l~~~~d~~~~l~~l~~~---LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 75 -P-----DGSFDLIICNDVLEHLPDPEEFLKELSRL---LKPGGYLVISDPNR 118 (161)
T ss_dssp -H-----SSSEEEEEEESSGGGSSHHHHHHHHHHHC---EEEEEEEEEEEEBT
T ss_pred -c-----ccchhhHhhHHHHhhcccHHHHHHHHHHh---cCCCCEEEEEEcCC
Confidence 1 68999999988866554 455555555 99999999987764
No 113
>PTZ00146 fibrillarin; Provisional
Probab=99.29 E-value=4.9e-11 Score=105.05 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=79.7
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHHhCCCCC
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGEAS 194 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~l~~~~~~~ 194 (282)
+.+..+|||+|||+|.++..++..+.+.++|++||+++.+.+...+..+. ..++.++.+|+.+.. ..+ .+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~---r~NI~~I~~Da~~p~~y~~~-----~~ 201 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK---RPNIVPIIEDARYPQKYRML-----VP 201 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh---cCCCEEEECCccChhhhhcc-----cC
Confidence 46778999999999999999999987678999999998766444443332 135889999986421 111 35
Q ss_pred ceeEEEEcCCccccH-HHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411 195 SYDFAFVDAEKRMYQ-EYFELLLQLLLQIRVGGIIVIDNVLWHG 237 (282)
Q Consensus 195 ~fDlV~id~~~~~~~-~~l~~~~~~~~~LkpgG~lv~dd~~~~g 237 (282)
++|+||+|....+.. .++..+.++ |||||.+++. +.+..
T Consensus 202 ~vDvV~~Dva~pdq~~il~~na~r~---LKpGG~~vI~-ika~~ 241 (293)
T PTZ00146 202 MVDVIFADVAQPDQARIVALNAQYF---LKNGGHFIIS-IKANC 241 (293)
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHh---ccCCCEEEEE-Eeccc
Confidence 899999998744433 344567777 9999999993 44333
No 114
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.6e-11 Score=105.49 Aligned_cols=115 Identities=20% Similarity=0.305 Sum_probs=89.9
Q ss_pred ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (282)
Q Consensus 102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (282)
.++....-++..+.....+ +|||+|||+|..++.+++..| ..+++-+|+|..+++.++++++.+++++. .++..|..
T Consensus 142 ~lD~GS~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~ 218 (300)
T COG2813 142 KLDKGSRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLY 218 (300)
T ss_pred CcChHHHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccc
Confidence 3455555555555554444 999999999999999999987 89999999999999999999999998864 67777766
Q ss_pred hHHHHHHhCCCCCceeEEEEcCCccc----cH----HHHHHHHHhhcCCCCCcEEEE
Q 023411 182 DSLKALILNGEASSYDFAFVDAEKRM----YQ----EYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~~~~----~~----~~l~~~~~~~~~LkpgG~lv~ 230 (282)
+.. .++||+|+++++.+. .. .++....+. |++||-|-+
T Consensus 219 ~~v--------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~---L~~gGeL~i 264 (300)
T COG2813 219 EPV--------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARH---LKPGGELWI 264 (300)
T ss_pred ccc--------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHh---hccCCEEEE
Confidence 543 369999999987433 22 566677777 999997744
No 115
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.29 E-value=1.2e-11 Score=102.09 Aligned_cols=144 Identities=16% Similarity=0.182 Sum_probs=89.3
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
..-.++||+|||.|.+|..|+.+. .+++++|+++.+++.|+++... .. +|++++++..+..| .++||
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~-~V~~~~~dvp~~~P-------~~~FD 108 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LP-HVEWIQADVPEFWP-------EGRFD 108 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TTT----------SS-EE
T ss_pred cccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CC-CeEEEECcCCCCCC-------CCCee
Confidence 344689999999999999999875 4899999999999999998874 33 69999999988655 68999
Q ss_pred EEEEcCCc------cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChh--hHHHHHHHHHhhhCCCeEEEE
Q 023411 198 FAFVDAEK------RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAK--TISIRNFNKNLMEDERVSISM 269 (282)
Q Consensus 198 lV~id~~~------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 269 (282)
+|++.... .....++..+... |+|||.||+-..- .. ....|++.- ..-+..|++.+.+-+.+++--
T Consensus 109 LIV~SEVlYYL~~~~~L~~~l~~l~~~---L~pgG~LV~g~~r--d~-~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~ 182 (201)
T PF05401_consen 109 LIVLSEVLYYLDDAEDLRAALDRLVAA---LAPGGHLVFGHAR--DA-NCRRWGHAAGAETVLEMLQEHLTEVERVECRG 182 (201)
T ss_dssp EEEEES-GGGSSSHHHHHHHHHHHHHT---EEEEEEEEEEEE---HH-HHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-
T ss_pred EEEEehHhHcCCCHHHHHHHHHHHHHH---hCCCCEEEEEEec--CC-cccccCcccchHHHHHHHHHHhhheeEEEEcC
Confidence 99987552 2234456666666 9999999995442 10 001122211 112345566665555555544
Q ss_pred eecCCceEEEE
Q 023411 270 VPIGDGMTICQ 280 (282)
Q Consensus 270 lp~~~Gl~~~~ 280 (282)
-..+..-+|++
T Consensus 183 ~~~~~~~~~~~ 193 (201)
T PF05401_consen 183 GSPNEDCLLAR 193 (201)
T ss_dssp SSTTSEEEEEE
T ss_pred CCCCCceEeee
Confidence 44444444443
No 116
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.28 E-value=4.1e-11 Score=101.84 Aligned_cols=99 Identities=19% Similarity=0.251 Sum_probs=72.6
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCc
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS 195 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~ 195 (282)
.++.+|||||||+|.++..+++..++.++|++||+++. .... .++++++|+.+. ++.+......++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIV-GVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCC-CcEEEecCCCChHHHHHHHHHhCCCC
Confidence 56779999999999999999998866789999999881 1223 489999998763 233222112578
Q ss_pred eeEEEEcCCccc--------------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 196 YDFAFVDAEKRM--------------YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 196 fDlV~id~~~~~--------------~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
||+|+++..+.. ....++.+.++ |+|||.+++.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~---LkpGG~~vi~ 164 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDV---LAPGGSFVVK 164 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHH---cCCCCEEEEE
Confidence 999999764211 12356667777 9999999995
No 117
>PLN02823 spermine synthase
Probab=99.28 E-value=3.8e-11 Score=108.61 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=85.1
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC---CCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
..+++||.||+|.|..+.++++..+ ..+++.||++++.++.+++++...+ .+++++++.+|+.+.+... .+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-----~~ 175 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-----DE 175 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-----CC
Confidence 4678999999999999999888643 4689999999999999999986432 2468999999999887643 57
Q ss_pred ceeEEEEcCCcc---------ccHHHHH-HHHHhhcCCCCCcEEEEe
Q 023411 195 SYDFAFVDAEKR---------MYQEYFE-LLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 195 ~fDlV~id~~~~---------~~~~~l~-~~~~~~~~LkpgG~lv~d 231 (282)
+||+||+|.... ...++++ .+.+. |+|||++++.
T Consensus 176 ~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~---L~p~Gvlv~q 219 (336)
T PLN02823 176 KFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPK---LNPGGIFVTQ 219 (336)
T ss_pred CccEEEecCCCccccCcchhhccHHHHHHHHHHh---cCCCcEEEEe
Confidence 899999995421 1345777 78888 9999999885
No 118
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.28 E-value=7.3e-11 Score=101.78 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 023411 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184 (282)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l 184 (282)
+....++.......++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++...+. .++++.++..+..
T Consensus 34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 108 (233)
T PRK05134 34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELA 108 (233)
T ss_pred HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhh
Confidence 333445555555567889999999999999988874 46899999999999999999887665 4788888886654
Q ss_pred HHHHhCCCCCceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 185 KALILNGEASSYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 185 ~~l~~~~~~~~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
... .++||+|++.... .+....++.+.++ |+|||.+++...
T Consensus 109 ~~~-----~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~---L~~gG~l~v~~~ 152 (233)
T PRK05134 109 AEH-----PGQFDVVTCMEMLEHVPDPASFVRACAKL---VKPGGLVFFSTL 152 (233)
T ss_pred hhc-----CCCccEEEEhhHhhccCCHHHHHHHHHHH---cCCCcEEEEEec
Confidence 322 4799999986542 2345567778787 999999998754
No 119
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.27 E-value=1.8e-10 Score=94.76 Aligned_cols=130 Identities=18% Similarity=0.243 Sum_probs=100.0
Q ss_pred CCccCHHHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411 100 QMQVSPDQAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (282)
Q Consensus 100 ~~~~~~~~~~ll~~l~~-~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g 178 (282)
+|..+.....+...+.. ...+.++||+-+|+|..++..+++-. .+++.||.+.......++|++..+...+++++..
T Consensus 23 RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~ 100 (187)
T COG0742 23 RPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRN 100 (187)
T ss_pred CCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence 45556666666667766 47889999999999999999888642 6899999999999999999999998888999999
Q ss_pred chhhHHHHHHhCCCCCceeEEEEcCCccc-cHH-HHHHHH-HhhcCCCCCcEEEEeCCC
Q 023411 179 LAADSLKALILNGEASSYDFAFVDAEKRM-YQE-YFELLL-QLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 179 d~~~~l~~l~~~~~~~~fDlV~id~~~~~-~~~-~l~~~~-~~~~~LkpgG~lv~dd~~ 234 (282)
|+...++.+.. .+.||+||+|++... ..+ ....+. ...+||+|+|.++++.-.
T Consensus 101 da~~~L~~~~~---~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 101 DALRALKQLGT---REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred cHHHHHHhcCC---CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 99876666521 235999999999652 221 222222 126889999999997543
No 120
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.27 E-value=1.8e-11 Score=110.67 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=78.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
++.+|||||||+|..+..+++..+ +.+|+++|+++++++.++++... .+++++++|+.+. +. ..++||+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p~-----~~~sFDv 181 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-PF-----PTDYADR 181 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-CC-----CCCceeE
Confidence 567999999999999999998875 57999999999999999987642 3588999998653 11 1478999
Q ss_pred EEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 199 AFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 199 V~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
|++....+ +....++++.++ |+|||.+++-+
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rv---LkPGG~LvIi~ 215 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRV---LKIGGKACLIG 215 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHh---cCCCcEEEEEE
Confidence 99876532 345567778787 99999987743
No 121
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.27 E-value=1e-10 Score=104.81 Aligned_cols=109 Identities=14% Similarity=0.053 Sum_probs=78.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
++.+|||+|||+|..+..+++.++++.+|+++|+|++|++.+++++......-++.++++|+.+..+... ........+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~-~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP-EPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc-ccccCCeEE
Confidence 5579999999999999999998864579999999999999999988764433357889999876433221 100113334
Q ss_pred EEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 199 AFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 199 V~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
++++.. ......+++.+.+. |+|||.++++
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~---L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQL---LGPGGGLLIG 176 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHh---cCCCCEEEEe
Confidence 555443 22344567777777 9999999875
No 122
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.26 E-value=2.7e-11 Score=102.93 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=85.2
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCC-----CCEEEEEecCccHHHHHHHHHHHhCCCCc--EEEEEcchhhHHHHHHh
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPE-----SGCLVACERDARSLEVAKKYYERAGVSHK--VKIKHGLAADSLKALIL 189 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~-----~~~v~~iD~s~~~~~~a~~~~~~~g~~~~--v~~~~gd~~~~l~~l~~ 189 (282)
..+..++||++||||..+..+.++.+. +++|+.+|++|+|+..++++.++.++... +.++++|+.+. |.
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-pF--- 173 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-PF--- 173 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-CC---
Confidence 345679999999999999999999863 27999999999999999999988888655 99999999654 32
Q ss_pred CCCCCceeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 190 NGEASSYDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 190 ~~~~~~fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
++++||...+....+ +....++++.++ |||||.+.+
T Consensus 174 --dd~s~D~yTiafGIRN~th~~k~l~EAYRV---LKpGGrf~c 212 (296)
T KOG1540|consen 174 --DDDSFDAYTIAFGIRNVTHIQKALREAYRV---LKPGGRFSC 212 (296)
T ss_pred --CCCcceeEEEecceecCCCHHHHHHHHHHh---cCCCcEEEE
Confidence 268999988876644 455566777676 999998875
No 123
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.26 E-value=4.4e-11 Score=101.83 Aligned_cols=101 Identities=17% Similarity=0.092 Sum_probs=74.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC--------------CCcEEEEEcchhhHH
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--------------SHKVKIKHGLAADSL 184 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--------------~~~v~~~~gd~~~~l 184 (282)
++.+|||+|||.|..++++|+. +.+|+|+|+|+.+++.+.+ ++++ ..+++++++|..+..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence 5579999999999999999974 5799999999999987533 2222 235899999998753
Q ss_pred HHHHhCCCCCceeEEEEcC-----CccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 185 KALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 185 ~~l~~~~~~~~fDlV~id~-----~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
... .+.||.|+-.. .......+++.+.++ |+|||++++...
T Consensus 108 ~~~-----~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~l---LkpgG~~ll~~~ 153 (213)
T TIGR03840 108 AAD-----LGPVDAVYDRAALIALPEEMRQRYAAHLLAL---LPPGARQLLITL 153 (213)
T ss_pred ccc-----CCCcCEEEechhhccCCHHHHHHHHHHHHHH---cCCCCeEEEEEE
Confidence 321 25688876432 234456688888888 999997666544
No 124
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.25 E-value=1.5e-10 Score=109.27 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=92.1
Q ss_pred CCccCHHHHHHHHH-HH---hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEE
Q 023411 100 QMQVSPDQAQLLAM-LV---QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI 175 (282)
Q Consensus 100 ~~~~~~~~~~ll~~-l~---~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~ 175 (282)
..++++...+.+.. +. ...++.+|||+|||+|.+++.+++.. .+|+++|+|+++++.|+++++.+++. ++++
T Consensus 274 F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~ 349 (443)
T PRK13168 274 FIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLD-NVTF 349 (443)
T ss_pred eEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEE
Confidence 34566665444333 22 33466899999999999999999864 68999999999999999999998886 4999
Q ss_pred EEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 176 KHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 176 ~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+++|+.+.+..... ..++||+|++|.+.......++.+.+ ++|++++.+.
T Consensus 350 ~~~d~~~~l~~~~~--~~~~fD~Vi~dPPr~g~~~~~~~l~~----~~~~~ivyvS 399 (443)
T PRK13168 350 YHANLEEDFTDQPW--ALGGFDKVLLDPPRAGAAEVMQALAK----LGPKRIVYVS 399 (443)
T ss_pred EEeChHHhhhhhhh--hcCCCCEEEECcCCcChHHHHHHHHh----cCCCeEEEEE
Confidence 99999775432110 03579999999986665566665555 5899998885
No 125
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.25 E-value=9.3e-11 Score=100.32 Aligned_cols=102 Identities=21% Similarity=0.311 Sum_probs=87.5
Q ss_pred CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~ 200 (282)
..+||||||.|.+...+|...| +..++|||+....+..+.+.+.+.++. ++.++++|+.+.+..+.+. ++.|-|+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~---~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPD---GSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCC---CCeeEEE
Confidence 4899999999999999999988 679999999999999999999999997 5999999999998888642 3666665
Q ss_pred E---cCCcc--c------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411 201 V---DAEKR--M------YQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 201 i---d~~~~--~------~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
+ |+|+. + ...+++.+.+. |+|||.|-+
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~---Lk~gG~l~~ 162 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARK---LKPGGVLHF 162 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHH---ccCCCEEEE
Confidence 5 66622 2 57789999999 999999977
No 126
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.25 E-value=4e-11 Score=105.16 Aligned_cols=117 Identities=17% Similarity=0.190 Sum_probs=80.3
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (282)
Q Consensus 113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~ 192 (282)
.......+++|||||||.||.+..|+..-+ ..|+|||.++......+..-+-.|....+.++. ...+.++.
T Consensus 109 p~l~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~------ 179 (315)
T PF08003_consen 109 PHLPDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPN------ 179 (315)
T ss_pred hhhCCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhccc------
Confidence 333456789999999999999999998643 579999999887766554444444443333332 23333333
Q ss_pred CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
.+.||+||+-++.-|..+.+..+..+...|+|||.||++....+|.
T Consensus 180 ~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence 3789999998884444444444444444499999999998887775
No 127
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.25 E-value=2.1e-10 Score=105.77 Aligned_cols=121 Identities=17% Similarity=0.109 Sum_probs=93.5
Q ss_pred CCCCccCHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcE
Q 023411 98 GSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 173 (282)
Q Consensus 98 ~~~~~~~~~~~~ll~~l~~----~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v 173 (282)
.+..++++...+.+...+. ..++.+|||+|||+|.+++.++.. +.+|+++|+++.+++.|+++++.+++. ++
T Consensus 208 ~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~~ 283 (374)
T TIGR02085 208 QSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-NL 283 (374)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-cE
Confidence 4456777777666654332 235679999999999999999963 468999999999999999999999886 69
Q ss_pred EEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc-cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 174 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 174 ~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~-~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+++++|+.+.+... ..+||+||+|++... ....++.+.. ++|++++.+.
T Consensus 284 ~~~~~d~~~~~~~~-----~~~~D~vi~DPPr~G~~~~~l~~l~~----~~p~~ivyvs 333 (374)
T TIGR02085 284 SFAALDSAKFATAQ-----MSAPELVLVNPPRRGIGKELCDYLSQ----MAPKFILYSS 333 (374)
T ss_pred EEEECCHHHHHHhc-----CCCCCEEEECCCCCCCcHHHHHHHHh----cCCCeEEEEE
Confidence 99999997765432 356999999988554 3445565654 6899988885
No 128
>PRK03612 spermidine synthase; Provisional
Probab=99.24 E-value=5e-11 Score=114.32 Aligned_cols=107 Identities=19% Similarity=0.292 Sum_probs=84.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHH--HHHh---CC-CCcEEEEEcchhhHHHHHHhC
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY--YERA---GV-SHKVKIKHGLAADSLKALILN 190 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~---g~-~~~v~~~~gd~~~~l~~l~~~ 190 (282)
..++++|||||||+|..+..++++ +...+++++|+|+++++.++++ +... .. +++++++.+|+.+.+...
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~--- 370 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL--- 370 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence 356789999999999999999875 4237999999999999999994 3321 12 358999999998876654
Q ss_pred CCCCceeEEEEcCCccc--------cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 191 GEASSYDFAFVDAEKRM--------YQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 191 ~~~~~fDlV~id~~~~~--------~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
.++||+|++|..... ..++++.+.+. |+|||+++++.
T Consensus 371 --~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~---L~pgG~lv~~~ 415 (521)
T PRK03612 371 --AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRR---LAPDGLLVVQS 415 (521)
T ss_pred --CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHh---cCCCeEEEEec
Confidence 579999999965321 23578888888 99999999864
No 129
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.23 E-value=1e-10 Score=96.06 Aligned_cols=115 Identities=11% Similarity=0.039 Sum_probs=87.8
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
...++.+|||||||+|..+..+++. .++++++|+++.+++.+++++.. .++++++++|+.+.... ...
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~------~~~ 77 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP------KLQ 77 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc------ccC
Confidence 3456679999999999999999986 37999999999999999988854 34699999999875321 346
Q ss_pred eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCc
Q 023411 196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQM 243 (282)
Q Consensus 196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~ 243 (282)
||.||.+.+.......+..+... ..+.++|+++++.-.....++.|.
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~-~~~~~~~~l~~q~e~a~rl~~~~~ 124 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE-PPAFRDAVLMVQKEVARRLAAKPG 124 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc-CCCcceEEEEEEHHHhHHhcCCCC
Confidence 99999988766555555555542 225588999998776666666554
No 130
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.23 E-value=1.4e-10 Score=101.96 Aligned_cols=106 Identities=16% Similarity=0.234 Sum_probs=76.1
Q ss_pred CCCEEEEEcccccH----HHHHHHHHCCC----CCEEEEEecCccHHHHHHHHHH----HhC------------------
Q 023411 119 GAQRCIEVGVYTGY----SSLAIALVLPE----SGCLVACERDARSLEVAKKYYE----RAG------------------ 168 (282)
Q Consensus 119 ~~~~VLEIG~G~G~----~t~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~----~~g------------------ 168 (282)
++.+|+|+|||+|. .+..+++..+. +.+|+|+|+|+++++.|++.+- ..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996 45555665442 4689999999999999988531 001
Q ss_pred ----CCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc-----ccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 169 ----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 169 ----~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~-----~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
+.++|+|.++|..+..+. .++||+|++-.... .....++.+.+. |+|||+|++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~------~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~---L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPP------LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEA---LKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCc------cCCCCEEEechhHHhCCHHHHHHHHHHHHHH---hCCCeEEEEECc
Confidence 224689999998764321 47899999976532 234567777777 999999999543
No 131
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.23 E-value=1.1e-10 Score=100.19 Aligned_cols=126 Identities=17% Similarity=0.284 Sum_probs=96.1
Q ss_pred CCccCHHHHHHHHHHHhh------cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcE
Q 023411 100 QMQVSPDQAQLLAMLVQI------LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 173 (282)
Q Consensus 100 ~~~~~~~~~~ll~~l~~~------~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v 173 (282)
..+..+++.+++...... .++..++|+|||+|.+++.++..++ .+++++||.|+.++..|.+|.+.+++.+++
T Consensus 123 VlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 123 VLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred eeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence 345678888888777643 3566899999999999999999998 899999999999999999999999999999
Q ss_pred EEEEc----chhhHHHHHHhCCCCCceeEEEEcCCc--------------------------cc---cHHHHHHHHHhhc
Q 023411 174 KIKHG----LAADSLKALILNGEASSYDFAFVDAEK--------------------------RM---YQEYFELLLQLLL 220 (282)
Q Consensus 174 ~~~~g----d~~~~l~~l~~~~~~~~fDlV~id~~~--------------------------~~---~~~~l~~~~~~~~ 220 (282)
.+++- |..+..+.+ .+++|+++++.+. +. +..++..+.++
T Consensus 202 ~v~~~~me~d~~~~~~l~-----~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~-- 274 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLL-----EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRM-- 274 (328)
T ss_pred EEEecccccccccccccc-----cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhh--
Confidence 98854 444333322 5899999876541 11 22233444455
Q ss_pred CCCCCcEEEEeCCC
Q 023411 221 QIRVGGIIVIDNVL 234 (282)
Q Consensus 221 ~LkpgG~lv~dd~~ 234 (282)
|+|||.+.++-+.
T Consensus 275 -Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 275 -LQPGGFEQLELVE 287 (328)
T ss_pred -cccCCeEEEEecc
Confidence 9999999997553
No 132
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.22 E-value=1.4e-10 Score=97.34 Aligned_cols=101 Identities=22% Similarity=0.345 Sum_probs=83.4
Q ss_pred EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i 201 (282)
.+||||||.|.+.+.+|...| +..++|+|+....+..+.+.+...++.+ +.++++|+...+..+.+ ++++|.|++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~---~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFP---PGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHST---TTSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhccc---CCchheEEE
Confidence 899999999999999999987 7999999999999999999999999875 99999999988877653 478999887
Q ss_pred c---CCcc--------ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 202 D---AEKR--------MYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 202 d---~~~~--------~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
. +++. ....+++.+.++ |+|||.|.+
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~---L~~gG~l~~ 131 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARV---LKPGGELYF 131 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHH---EEEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHH---cCCCCEEEE
Confidence 4 4421 257789999999 999999866
No 133
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.21 E-value=3.6e-10 Score=106.28 Aligned_cols=122 Identities=18% Similarity=0.225 Sum_probs=91.5
Q ss_pred CCccCHHHHHHHHH-H---HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEE
Q 023411 100 QMQVSPDQAQLLAM-L---VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI 175 (282)
Q Consensus 100 ~~~~~~~~~~ll~~-l---~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~ 175 (282)
..+.++.....+.. + +...++.+|||+|||+|.+++.+++.. .+|+++|+++++++.|+++++.+++. ++++
T Consensus 269 F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~ 344 (431)
T TIGR00479 269 FFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIA-NVEF 344 (431)
T ss_pred eeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEE
Confidence 34455554443332 2 233466899999999999999999863 58999999999999999999999875 5999
Q ss_pred EEcchhhHHHHHHhCCCCCceeEEEEcCCccc-cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 176 KHGLAADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 176 ~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~-~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+++|+.+.++..... .++||+|++|.+... ....++.+.+ ++|++++++.
T Consensus 345 ~~~d~~~~l~~~~~~--~~~~D~vi~dPPr~G~~~~~l~~l~~----l~~~~ivyvs 395 (431)
T TIGR00479 345 LAGTLETVLPKQPWA--GQIPDVLLLDPPRKGCAAEVLRTIIE----LKPERIVYVS 395 (431)
T ss_pred EeCCHHHHHHHHHhc--CCCCCEEEECcCCCCCCHHHHHHHHh----cCCCEEEEEc
Confidence 999998766543211 357999999998544 5666666654 6899988774
No 134
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.21 E-value=2.2e-10 Score=97.92 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=77.8
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
..++.+|||+|||+|..+..++.. +.+|+|+|+++++++.|++++...+..+++++.++|+.+. .++|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~f 120 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---------CGEF 120 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------CCCc
Confidence 346789999999999999999874 4699999999999999999998877766799999998643 3689
Q ss_pred eEEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 197 DFAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 197 DlV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
|+|++.... ......+..+.++ +++++++.+.
T Consensus 121 D~ii~~~~l~~~~~~~~~~~l~~i~~~---~~~~~~i~~~ 157 (219)
T TIGR02021 121 DIVVCMDVLIHYPASDMAKALGHLASL---TKERVIFTFA 157 (219)
T ss_pred CEEEEhhHHHhCCHHHHHHHHHHHHHH---hCCCEEEEEC
Confidence 999874332 2233455666665 8877777664
No 135
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.21 E-value=1.2e-10 Score=102.87 Aligned_cols=94 Identities=22% Similarity=0.225 Sum_probs=72.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCC--CEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPES--GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~--~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
+..+|||+|||+|+.+..++..++.. ..++|+|+|+.+++.|+++. .++++..+|+.+. +.. +++|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p~~-----~~sf 152 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-PFA-----DQSL 152 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-CCc-----CCce
Confidence 45789999999999999999877532 47999999999999987653 2488899988653 211 5799
Q ss_pred eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
|+|+....+. .++++.++ |+|||++++-
T Consensus 153 D~I~~~~~~~----~~~e~~rv---LkpgG~li~~ 180 (272)
T PRK11088 153 DAIIRIYAPC----KAEELARV---VKPGGIVITV 180 (272)
T ss_pred eEEEEecCCC----CHHHHHhh---ccCCCEEEEE
Confidence 9999754432 34667777 9999999874
No 136
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.21 E-value=2.2e-10 Score=95.72 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=73.5
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhC
Q 023411 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN 190 (282)
Q Consensus 113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~ 190 (282)
.+....++.+|||+|||+|..+..++....+.++|+++|+++.+ .. .+++++++|..+. ...+...
T Consensus 26 ~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred HhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHH
Confidence 34445678899999999999999999887546799999999864 12 2478888887542 1222111
Q ss_pred CCCCceeEEEEcCCcc--------c------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 191 GEASSYDFAFVDAEKR--------M------YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 191 ~~~~~fDlV~id~~~~--------~------~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
...++||+|+++...+ + ....++.+.++ |+|||.+++.
T Consensus 94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~lvi~ 145 (188)
T TIGR00438 94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEV---LKPKGNFVVK 145 (188)
T ss_pred hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHH---ccCCCEEEEE
Confidence 1146899999975311 1 13566777777 9999999995
No 137
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.20 E-value=1e-10 Score=111.35 Aligned_cols=113 Identities=17% Similarity=0.207 Sum_probs=81.9
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (282)
Q Consensus 111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~ 190 (282)
+...+...++.+|||||||+|..+..+++.. .+|+++|+++++++.+++. .+...+++++++|+.+....+
T Consensus 29 il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~--- 99 (475)
T PLN02336 29 ILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNI--- 99 (475)
T ss_pred HHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCC---
Confidence 3334444456799999999999999999863 5899999999999876553 233456899999985321111
Q ss_pred CCCCceeEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411 191 GEASSYDFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNVLWH 236 (282)
Q Consensus 191 ~~~~~fDlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~~~ 236 (282)
..++||+|++.....+ ...+++.+.++ |+|||++++.+..+.
T Consensus 100 -~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~---Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 100 -SDGSVDLIFSNWLLMYLSDKEVENLAERMVKW---LKVGGYIFFRESCFH 146 (475)
T ss_pred -CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHh---cCCCeEEEEEeccCC
Confidence 1478999998765332 34567777777 999999999776544
No 138
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.19 E-value=3.5e-10 Score=96.78 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=81.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
.+.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+.. ++++..+|+.+..... .++||+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~-----~~~~D~ 115 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG-----AKSFDV 115 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC-----CCCccE
Confidence 4679999999999999988874 357999999999999999998876653 4889988887654321 378999
Q ss_pred EEEcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 199 AFVDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 199 V~id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
|++... ..+....++.+.++ |+|||.+++...
T Consensus 116 i~~~~~l~~~~~~~~~l~~~~~~---L~~gG~l~i~~~ 150 (224)
T TIGR01983 116 VTCMEVLEHVPDPQAFIRACAQL---LKPGGILFFSTI 150 (224)
T ss_pred EEehhHHHhCCCHHHHHHHHHHh---cCCCcEEEEEec
Confidence 998754 33455677788787 999999988654
No 139
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.19 E-value=9e-10 Score=97.19 Aligned_cols=104 Identities=21% Similarity=0.332 Sum_probs=89.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC--C-CCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~-~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
.+++||-||-|.|..+..++++.+ -.+++.||+++..++.+++.+.... . +.|++++.+|+.+++... ..+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-----~~~ 149 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-----EEK 149 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-----CCc
Confidence 347999999999999999999865 5799999999999999999988643 2 479999999999988876 468
Q ss_pred eeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 196 YDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 196 fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
||+|++|.... ....+++.|.+. |+++|+++..
T Consensus 150 fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~---L~~~Gi~v~q 189 (282)
T COG0421 150 FDVIIVDSTDPVGPAEALFTEEFYEGCRRA---LKEDGIFVAQ 189 (282)
T ss_pred CCEEEEcCCCCCCcccccCCHHHHHHHHHh---cCCCcEEEEe
Confidence 99999997633 247799999999 9999999997
No 140
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.19 E-value=1e-10 Score=96.47 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=77.6
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEE-EEEcchhhHHHHHHhCCCCCce
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK-IKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~-~~~gd~~~~l~~l~~~~~~~~f 196 (282)
.....|||+|||+|..-.+.- . .+..+||++|.++.|-+.+.+.+.++...+ +. |+.++..+ +++++ +++|
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~-~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~-l~~l~----d~s~ 146 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYP-W-KPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGEN-LPQLA----DGSY 146 (252)
T ss_pred cCccceEEecccCCCCccccc-C-CCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhc-Ccccc----cCCe
Confidence 344578999999998643222 1 147899999999999999999998875554 65 99998854 45553 6899
Q ss_pred eEEEEc---CCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 197 DFAFVD---AEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 197 DlV~id---~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
|.|++- +..++....++++.++ |||||++++
T Consensus 147 DtVV~TlvLCSve~~~k~L~e~~rl---LRpgG~iif 180 (252)
T KOG4300|consen 147 DTVVCTLVLCSVEDPVKQLNEVRRL---LRPGGRIIF 180 (252)
T ss_pred eeEEEEEEEeccCCHHHHHHHHHHh---cCCCcEEEE
Confidence 999764 4456666778888888 999998877
No 141
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.19 E-value=5.9e-10 Score=95.27 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=74.8
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC--------------CCcEEEEEcchhhH
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--------------SHKVKIKHGLAADS 183 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--------------~~~v~~~~gd~~~~ 183 (282)
.++.+|||+|||.|..++++|+. +.+|+|||+++.+++.+.+ +.++ ..+|++.++|+.+.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCC
Confidence 35579999999999999999974 6799999999999987632 2222 24689999999875
Q ss_pred HHHHHhCCCCCceeEEEE-----cCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 184 LKALILNGEASSYDFAFV-----DAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 184 l~~l~~~~~~~~fDlV~i-----d~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
.+.. .+.||+|+- .-.++....+++.+.++ |+|||++++
T Consensus 110 ~~~~-----~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~l---L~pgG~~~l 153 (218)
T PRK13255 110 TAAD-----LADVDAVYDRAALIALPEEMRERYVQQLAAL---LPAGCRGLL 153 (218)
T ss_pred Cccc-----CCCeeEEEehHhHhhCCHHHHHHHHHHHHHH---cCCCCeEEE
Confidence 3321 368899883 23345567789999998 999986443
No 142
>PRK06202 hypothetical protein; Provisional
Probab=99.19 E-value=1.4e-10 Score=100.14 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=76.1
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHHHCC---CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH
Q 023411 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL 187 (282)
Q Consensus 111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l 187 (282)
+.......++.+|||+|||+|..+..+++..+ ++.+|+++|+++++++.|+++.... ++++..++..+. +..
T Consensus 52 ~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~~~ 126 (232)
T PRK06202 52 LRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-VAE 126 (232)
T ss_pred HHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-ccc
Confidence 33333445678999999999999999887542 2459999999999999998876533 255555554322 211
Q ss_pred HhCCCCCceeEEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411 188 ILNGEASSYDFAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVLWH 236 (282)
Q Consensus 188 ~~~~~~~~fDlV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~~~ 236 (282)
+++||+|++....++. ...++.+.++ ++ |.+++.+...+
T Consensus 127 -----~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~---~~--~~~~i~dl~~~ 170 (232)
T PRK06202 127 -----GERFDVVTSNHFLHHLDDAEVVRLLADSAAL---AR--RLVLHNDLIRS 170 (232)
T ss_pred -----CCCccEEEECCeeecCChHHHHHHHHHHHHh---cC--eeEEEeccccC
Confidence 5799999987664433 3466666666 76 66677766544
No 143
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.18 E-value=4.6e-10 Score=96.37 Aligned_cols=98 Identities=19% Similarity=0.202 Sum_probs=73.3
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|++++...+..+++++..+|.. .. .++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~-----~~~fD 129 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SL-----LGRFD 129 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hc-----cCCcC
Confidence 46779999999999999999875 35799999999999999999988887677999999842 11 47899
Q ss_pred EEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEE
Q 023411 198 FAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 198 lV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
+|++.....+ ....++.+.++ +++++++.+
T Consensus 130 ~v~~~~~l~~~~~~~~~~~l~~l~~~---~~~~~~i~~ 164 (230)
T PRK07580 130 TVVCLDVLIHYPQEDAARMLAHLASL---TRGSLIFTF 164 (230)
T ss_pred EEEEcchhhcCCHHHHHHHHHHHHhh---cCCeEEEEE
Confidence 9998655322 23344445444 654444443
No 144
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.17 E-value=4.1e-10 Score=82.76 Aligned_cols=99 Identities=22% Similarity=0.344 Sum_probs=76.8
Q ss_pred EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i 201 (282)
+|+|+|||.|..+..++. . ...+++++|++++....+++..... ...+++++.+|..+..... .++||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEA-----DESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhcccc-----CCceEEEEE
Confidence 489999999999999987 2 3679999999999999888644333 3346899999987754311 478999999
Q ss_pred cCCccc----cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 202 DAEKRM----YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 202 d~~~~~----~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+..... ....++.+.+. ++|||.+++.
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~---l~~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHLVEDLARFLEEARRL---LKPGGVLVLT 103 (107)
T ss_pred ccceeehhhHHHHHHHHHHHH---cCCCCEEEEE
Confidence 877443 45567777777 9999999885
No 145
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.16 E-value=3.6e-10 Score=91.59 Aligned_cols=108 Identities=20% Similarity=0.323 Sum_probs=84.7
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
+.+|||+|||.|.....+++.- -.+.++|+|.|+.+++.|+...+..+.++.|+|.+.|+.+. ... .++||+|
T Consensus 68 A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~-----~~qfdlv 140 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFL-----SGQFDLV 140 (227)
T ss_pred ccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-ccc-----ccceeEE
Confidence 4499999999999999998753 13669999999999999999999999999999999998763 122 5778887
Q ss_pred EE---------c--CCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411 200 FV---------D--AEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG 237 (282)
Q Consensus 200 ~i---------d--~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g 237 (282)
.- . .......-|+..+.++ |+|||++++...-|.-
T Consensus 141 lDKGT~DAisLs~d~~~~r~~~Y~d~v~~l---l~~~gifvItSCN~T~ 186 (227)
T KOG1271|consen 141 LDKGTLDAISLSPDGPVGRLVVYLDSVEKL---LSPGGIFVITSCNFTK 186 (227)
T ss_pred eecCceeeeecCCCCcccceeeehhhHhhc---cCCCcEEEEEecCccH
Confidence 52 1 1123345578888888 9999999998775543
No 146
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.14 E-value=1.5e-09 Score=102.25 Aligned_cols=126 Identities=22% Similarity=0.282 Sum_probs=98.1
Q ss_pred CccCHHHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411 101 MQVSPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (282)
Q Consensus 101 ~~~~~~~~~ll~~l~--~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g 178 (282)
..+......+...++ ...++.+|||+++|.|+-|..++..+...+.++++|+++..+...++++++.|+.+ +.+...
T Consensus 93 ~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~ 171 (470)
T PRK11933 93 FYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHF 171 (470)
T ss_pred EEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeC
Confidence 344555555555555 56788999999999999999999999767899999999999999999999999975 888888
Q ss_pred chhhHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 179 LAADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 179 d~~~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
|+....... .+.||.|++|++... ....++.+.++ |||||+||..-.
T Consensus 172 D~~~~~~~~-----~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~---LkpGG~LVYSTC 243 (470)
T PRK11933 172 DGRVFGAAL-----PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHA---LKPGGTLVYSTC 243 (470)
T ss_pred chhhhhhhc-----hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHH---cCCCcEEEEECC
Confidence 887543333 468999999976220 13345555566 999999988766
Q ss_pred CC
Q 023411 234 LW 235 (282)
Q Consensus 234 ~~ 235 (282)
-+
T Consensus 244 T~ 245 (470)
T PRK11933 244 TL 245 (470)
T ss_pred CC
Confidence 43
No 147
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=99.13 E-value=2.9e-10 Score=95.04 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=89.5
Q ss_pred ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHH---CCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (282)
Q Consensus 102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g 178 (282)
.-.|.....+..++...+|+.|+|+|...|++++++|+. +...++|++||++..... ++.++...+.++|++++|
T Consensus 15 ~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~G 92 (206)
T PF04989_consen 15 IQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQG 92 (206)
T ss_dssp SS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES
T ss_pred hcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEEC
Confidence 335666667778888889999999999999999998764 334689999999654332 233344456689999999
Q ss_pred chhhHH--HHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccC----CcC--CChh
Q 023411 179 LAADSL--KALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVAD----QMV--NDAK 248 (282)
Q Consensus 179 d~~~~l--~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~----~~~--~~~~ 248 (282)
|..+.. .............+|+.|+. ..+....++...++ +++|+++|+.|..+...... +.+ +...
T Consensus 93 ds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~pl---v~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p 169 (206)
T PF04989_consen 93 DSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPL---VSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNP 169 (206)
T ss_dssp -SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT-----TT-EEEETSHHHHHHHHS-------------
T ss_pred CCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCcc---CCCCCEEEEEeccccccccccccccchhhhhHH
Confidence 987632 22111111245568888876 45667778888888 99999999998864443222 223 2345
Q ss_pred hHHHHHHHHHhhhCCCeEE
Q 023411 249 TISIRNFNKNLMEDERVSI 267 (282)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (282)
..++++|+ .+.++|++
T Consensus 170 ~~av~~fL---~~~~~f~i 185 (206)
T PF04989_consen 170 KTAVKEFL---AEHPDFEI 185 (206)
T ss_dssp HHHHHHHH---HTTTTEEE
T ss_pred HHHHHHHH---HHCCCcEe
Confidence 67888887 45666554
No 148
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.12 E-value=1.8e-09 Score=99.15 Aligned_cols=125 Identities=19% Similarity=0.126 Sum_probs=90.7
Q ss_pred CCCCccCHHHHHHHHHHHh-hc--CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEE
Q 023411 98 GSQMQVSPDQAQLLAMLVQ-IL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174 (282)
Q Consensus 98 ~~~~~~~~~~~~ll~~l~~-~~--~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~ 174 (282)
.++.++++...+.+...+. .. .+.+|||++||+|.+++.+++.. .+|++||+++.+++.+++|++.+++. +++
T Consensus 182 ~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~ 257 (362)
T PRK05031 182 NSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NVQ 257 (362)
T ss_pred CCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cEE
Confidence 4456677766665555443 22 23579999999999999998864 48999999999999999999999986 699
Q ss_pred EEEcchhhHHHHHHhCCC----------CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 175 IKHGLAADSLKALILNGE----------ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 175 ~~~gd~~~~l~~l~~~~~----------~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
++.+|+.+.++.+..... ..+||+||+|++..... -+.+..+ .++++++++.
T Consensus 258 ~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~--~~~l~~l---~~~~~ivyvS 319 (362)
T PRK05031 258 IIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLD--DETLKLV---QAYERILYIS 319 (362)
T ss_pred EEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCc--HHHHHHH---HccCCEEEEE
Confidence 999999887765432110 12589999999954322 2233444 5577877774
No 149
>PLN02672 methionine S-methyltransferase
Probab=99.11 E-value=1.2e-09 Score=111.17 Aligned_cols=97 Identities=13% Similarity=0.003 Sum_probs=73.0
Q ss_pred ccCHHHHHHHHHHHhhc----CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC--------
Q 023411 102 QVSPDQAQLLAMLVQIL----GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-------- 169 (282)
Q Consensus 102 ~~~~~~~~ll~~l~~~~----~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-------- 169 (282)
...++...++..+.... ++.+|||+|||+|.+++.++...+ .++|+++|+|+++++.|++|++.+++
T Consensus 97 IPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~ 175 (1082)
T PLN02672 97 IPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY 175 (1082)
T ss_pred cCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence 34455555555532211 246899999999999999999876 57999999999999999999998653
Q ss_pred -------CCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC
Q 023411 170 -------SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE 204 (282)
Q Consensus 170 -------~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~ 204 (282)
.++++++++|..+..... ..+||+|+.+.+
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~~~~-----~~~fDlIVSNPP 212 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYCRDN-----NIELDRIVGCIP 212 (1082)
T ss_pred ccccccccccEEEEECchhhhcccc-----CCceEEEEECCC
Confidence 257999999997654321 237999998654
No 150
>PRK05785 hypothetical protein; Provisional
Probab=99.11 E-value=3.2e-10 Score=97.56 Aligned_cols=88 Identities=13% Similarity=0.047 Sum_probs=67.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
++.+|||+|||+|..+..+++.. +++|+|+|+|++|++.|++. ..++++|+.+. +.. +++||+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p~~-----d~sfD~ 113 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-PFR-----DKSFDV 113 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-CCC-----CCCEEE
Confidence 46799999999999999999875 47999999999999998763 13567787543 221 689999
Q ss_pred EEEcCCcc---ccHHHHHHHHHhhcCCCCCc
Q 023411 199 AFVDAEKR---MYQEYFELLLQLLLQIRVGG 226 (282)
Q Consensus 199 V~id~~~~---~~~~~l~~~~~~~~~LkpgG 226 (282)
|++....+ +....++++.++ |||..
T Consensus 114 v~~~~~l~~~~d~~~~l~e~~Rv---Lkp~~ 141 (226)
T PRK05785 114 VMSSFALHASDNIEKVIAEFTRV---SRKQV 141 (226)
T ss_pred EEecChhhccCCHHHHHHHHHHH---hcCce
Confidence 99876533 445567777777 99953
No 151
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.10 E-value=4.4e-10 Score=94.43 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=103.1
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCC-CCcEEEEEcchhhHHHHHHhCCCC
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGV-SHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~-~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
....+.+|||.++|-||.++..+++ ++ +|++||.+|..++.|+-|-=..++ +..++++.||+.+..+.+. +
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~----D 203 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD----D 203 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC----c
Confidence 3456889999999999999988875 55 999999999999887654221222 1248999999999888773 6
Q ss_pred CceeEEEEcCCc-----c-ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEE
Q 023411 194 SSYDFAFVDAEK-----R-MYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSI 267 (282)
Q Consensus 194 ~~fDlV~id~~~-----~-~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (282)
++||+|+.|++. + ...++..++.++ |+|||.++- -+--+|.- -.+.+-..++.+-++.+ +|+.
T Consensus 204 ~sfDaIiHDPPRfS~AgeLYseefY~El~Ri---LkrgGrlFH-YvG~Pg~r---yrG~d~~~gVa~RLr~v----GF~~ 272 (287)
T COG2521 204 ESFDAIIHDPPRFSLAGELYSEEFYRELYRI---LKRGGRLFH-YVGNPGKR---YRGLDLPKGVAERLRRV----GFEV 272 (287)
T ss_pred cccceEeeCCCccchhhhHhHHHHHHHHHHH---cCcCCcEEE-EeCCCCcc---cccCChhHHHHHHHHhc----Ccee
Confidence 789999999871 1 134577777787 999999764 33333321 11222334455544433 7887
Q ss_pred EEeecCCceEEEEEC
Q 023411 268 SMVPIGDGMTICQKR 282 (282)
Q Consensus 268 ~~lp~~~Gl~~~~k~ 282 (282)
+-.-..+|-.+|+|+
T Consensus 273 v~~~~~~~gv~A~k~ 287 (287)
T COG2521 273 VKKVREALGVVAVKP 287 (287)
T ss_pred eeeehhccceEEecC
Confidence 666666666777764
No 152
>PHA03412 putative methyltransferase; Provisional
Probab=99.09 E-value=2.1e-09 Score=91.80 Aligned_cols=121 Identities=13% Similarity=0.126 Sum_probs=82.6
Q ss_pred CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCC--CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (282)
Q Consensus 101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g 178 (282)
....+..+..+. .......+|||+|||+|.+++.+++.++ +..+|+++|+++.+++.|++++. ++.++++
T Consensus 33 FfTP~~iAr~~~--i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~ 104 (241)
T PHA03412 33 FFTPIGLARDFT--IDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINA 104 (241)
T ss_pred cCCCHHHHHHHH--HhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEc
Confidence 334444444432 1223467999999999999999998753 24699999999999999998753 3789999
Q ss_pred chhhHHHHHHhCCCCCceeEEEEcCCcc-----c----------cHHHHHHHHHhhcCCCCCcEEEEeCCC---CCCcc
Q 023411 179 LAADSLKALILNGEASSYDFAFVDAEKR-----M----------YQEYFELLLQLLLQIRVGGIIVIDNVL---WHGKV 239 (282)
Q Consensus 179 d~~~~l~~l~~~~~~~~fDlV~id~~~~-----~----------~~~~l~~~~~~~~~LkpgG~lv~dd~~---~~g~~ 239 (282)
|+.+.. . .++||+|+.+++.. + ...++..+.++ +++|+.|+=.+++ ++|..
T Consensus 105 D~~~~~--~-----~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~L---l~~G~~ILP~~~~~~~y~~~~ 173 (241)
T PHA03412 105 DALTTE--F-----DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQI---ARQGTFIIPQMSANFRYSGTH 173 (241)
T ss_pred chhccc--c-----cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHH---cCCCEEEeCcccccCcccCcc
Confidence 986532 1 46899999987621 1 12244555555 8888875555554 55553
No 153
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.09 E-value=3e-09 Score=98.09 Aligned_cols=100 Identities=15% Similarity=0.232 Sum_probs=83.7
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
..+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++.+ ++++++|+.+.+.. .++||+|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~------~~~fD~V 129 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHE------ERKFDVV 129 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhh------cCCCCEE
Confidence 35899999999999999998764 4589999999999999999999999874 78999999766542 2579999
Q ss_pred EEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 200 FVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 200 ~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
++|+. .....+++..... +++||++.+.
T Consensus 130 ~lDP~-Gs~~~~l~~al~~---~~~~gilyvS 157 (382)
T PRK04338 130 DIDPF-GSPAPFLDSAIRS---VKRGGLLCVT 157 (382)
T ss_pred EECCC-CCcHHHHHHHHHH---hcCCCEEEEE
Confidence 99975 4445677776666 8999999996
No 154
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.07 E-value=9.1e-10 Score=95.81 Aligned_cols=106 Identities=22% Similarity=0.369 Sum_probs=85.4
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC---CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV---SHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~---~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
..+++||-||-|.|..+..+++.-+ ..+++.||+++..++.+++.+..... ++|++++.+|+...+... .+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-----~~ 148 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-----QE 148 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-----SS
T ss_pred CCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-----cC
Confidence 3688999999999999999987643 57999999999999999999876432 468999999999888765 45
Q ss_pred -ceeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 195 -SYDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 195 -~fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
+||+|++|...+ ...++++.+.+. |+|||++++..
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~---L~~~Gv~v~~~ 191 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRR---LKPDGVLVLQA 191 (246)
T ss_dssp T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHH---EEEEEEEEEEE
T ss_pred CcccEEEEeCCCCCCCcccccCHHHHHHHHhh---cCCCcEEEEEc
Confidence 899999986631 246799999999 99999999864
No 155
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.4e-08 Score=83.21 Aligned_cols=87 Identities=17% Similarity=0.287 Sum_probs=70.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
.++.|+|+|||||.+++..+..-+ .+|+++|+++++++.+++|.++ +..++.++.+|+.+. ...+|.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~---------~~~~dt 111 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDF---------RGKFDT 111 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhc---------CCccce
Confidence 567899999999999998876533 7899999999999999999998 445699999999765 689999
Q ss_pred EEEcCC-----ccccHHHHHHHHHh
Q 023411 199 AFVDAE-----KRMYQEYFELLLQL 218 (282)
Q Consensus 199 V~id~~-----~~~~~~~l~~~~~~ 218 (282)
++++++ .+.-..+++...+.
T Consensus 112 vimNPPFG~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 112 VIMNPPFGSQRRHADRPFLLKALEI 136 (198)
T ss_pred EEECCCCccccccCCHHHHHHHHHh
Confidence 999877 23344566666665
No 156
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.07 E-value=3.1e-09 Score=87.65 Aligned_cols=112 Identities=20% Similarity=0.364 Sum_probs=74.1
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC--CCCcEEEEEcchhhHH-HHHHhCCC
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--VSHKVKIKHGLAADSL-KALILNGE 192 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~v~~~~gd~~~~l-~~l~~~~~ 192 (282)
...++++|||+|||+|..++.++...+ ..+|+..|.++ .++..+.|++.++ ...++.+..-|..+.. +... +
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~---~ 116 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL---E 116 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH---S
T ss_pred hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc---c
Confidence 345788999999999999999998743 57999999988 9999999999887 5667888887765532 2221 1
Q ss_pred CCceeEEEEcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411 193 ASSYDFAFVDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNVLW 235 (282)
Q Consensus 193 ~~~fDlV~id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~ 235 (282)
..+||+|+.... ...+..++..+..+ |+++|.+++..-.+
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~l---l~~~~~vl~~~~~R 159 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRL---LKPNGKVLLAYKRR 159 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHH---BTT-TTEEEEEE-S
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHH---hCCCCEEEEEeCEe
Confidence 468999996433 45577888999998 99998866654443
No 157
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.06 E-value=1.4e-09 Score=91.40 Aligned_cols=100 Identities=20% Similarity=0.259 Sum_probs=77.3
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.++..|+|..||.|++++.+|+..+ ..+|+++|++|.+++..+++++.+++.+++..+++|+.+..+ .+.+|
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-------~~~~d 171 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-------EGKFD 171 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----------TT-EE
T ss_pred CcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-------ccccC
Confidence 4677999999999999999998543 578999999999999999999999999999999999988766 48999
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCCCcEEE
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIV 229 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv 229 (282)
.|+++.+... ..++..+..+ +++||++-
T Consensus 172 rvim~lp~~~-~~fl~~~~~~---~~~~g~ih 199 (200)
T PF02475_consen 172 RVIMNLPESS-LEFLDAALSL---LKEGGIIH 199 (200)
T ss_dssp EEEE--TSSG-GGGHHHHHHH---EEEEEEEE
T ss_pred EEEECChHHH-HHHHHHHHHH---hcCCcEEE
Confidence 9999876443 3678888888 99999874
No 158
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.2e-09 Score=93.79 Aligned_cols=104 Identities=19% Similarity=0.201 Sum_probs=88.8
Q ss_pred CCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEE
Q 023411 97 RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK 176 (282)
Q Consensus 97 ~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~ 176 (282)
++..-++......++.++....++.+|+|-|+|+|..+.++++.+.+.|+++.+|..+...+.|.+.++..|+.++++++
T Consensus 83 phRTQI~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~ 162 (314)
T KOG2915|consen 83 PHRTQILYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVT 162 (314)
T ss_pred cCcceEEecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEE
Confidence 33344566667778888899999999999999999999999999988999999999999999999999999999999999
Q ss_pred EcchhhHHHHHHhCCCCCceeEEEEcCC
Q 023411 177 HGLAADSLKALILNGEASSYDFAFVDAE 204 (282)
Q Consensus 177 ~gd~~~~l~~l~~~~~~~~fDlV~id~~ 204 (282)
+-|.+..-.... +..+|.||+|-+
T Consensus 163 hrDVc~~GF~~k----s~~aDaVFLDlP 186 (314)
T KOG2915|consen 163 HRDVCGSGFLIK----SLKADAVFLDLP 186 (314)
T ss_pred EeecccCCcccc----ccccceEEEcCC
Confidence 999875322111 578999999976
No 159
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.03 E-value=4.9e-09 Score=95.95 Aligned_cols=125 Identities=18% Similarity=0.120 Sum_probs=88.6
Q ss_pred CCCCccCHHHHHHHHHH-HhhcC--CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEE
Q 023411 98 GSQMQVSPDQAQLLAML-VQILG--AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174 (282)
Q Consensus 98 ~~~~~~~~~~~~ll~~l-~~~~~--~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~ 174 (282)
.+..++++.....+... ..... +.+|||+|||+|.+++.+++.. .+|++||+++++++.++++++.+++.+ ++
T Consensus 173 ~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~-v~ 248 (353)
T TIGR02143 173 NSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDN-VQ 248 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCc-EE
Confidence 34556666665555433 33222 3479999999999999999875 489999999999999999999999864 99
Q ss_pred EEEcchhhHHHHHHh-------CC---CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 175 IKHGLAADSLKALIL-------NG---EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 175 ~~~gd~~~~l~~l~~-------~~---~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
++.+|+.+.++.... .+ ....||+||+|++...... +.+..+ .+|++++.+.
T Consensus 249 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~--~~l~~l---~~~~~ivYvs 310 (353)
T TIGR02143 249 IIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDP--DTCKLV---QAYERILYIS 310 (353)
T ss_pred EEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcH--HHHHHH---HcCCcEEEEE
Confidence 999999887654211 00 0124899999998544322 233444 5678888874
No 160
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.01 E-value=5.7e-09 Score=93.81 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=69.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC----CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----SHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++.+..+. ..++++..+|..+ + .+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~----l-----~~ 211 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES----L-----SG 211 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh----c-----CC
Confidence 5679999999999999999974 47999999999999999999876532 2357888888643 2 47
Q ss_pred ceeEEEEcCCccccH-----HHHHHHHHhhcCCCCCcEEEE
Q 023411 195 SYDFAFVDAEKRMYQ-----EYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 195 ~fDlV~id~~~~~~~-----~~l~~~~~~~~~LkpgG~lv~ 230 (282)
+||+|++.....++. ..+..+.. +.+||+++.
T Consensus 212 ~fD~Vv~~~vL~H~p~~~~~~ll~~l~~----l~~g~liIs 248 (315)
T PLN02585 212 KYDTVTCLDVLIHYPQDKADGMIAHLAS----LAEKRLIIS 248 (315)
T ss_pred CcCEEEEcCEEEecCHHHHHHHHHHHHh----hcCCEEEEE
Confidence 899998765533332 22333332 456666654
No 161
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.01 E-value=9e-09 Score=91.76 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=76.2
Q ss_pred CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (282)
Q Consensus 101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (282)
+.+++.....+...+...++.+|||||||+|..|..++.. ..+|+++|+|+.+++.+++++...+..++++++++|+
T Consensus 18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da 94 (294)
T PTZ00338 18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94 (294)
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 3445555555555555667789999999999999999986 3589999999999999999998877666799999999
Q ss_pred hhHHHHHHhCCCCCceeEEEEcCCcccc
Q 023411 181 ADSLKALILNGEASSYDFAFVDAEKRMY 208 (282)
Q Consensus 181 ~~~l~~l~~~~~~~~fDlV~id~~~~~~ 208 (282)
.+.. ...||.|+.+.+..-.
T Consensus 95 l~~~--------~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 95 LKTE--------FPYFDVCVANVPYQIS 114 (294)
T ss_pred hhhc--------ccccCEEEecCCcccC
Confidence 7642 2578999988775433
No 162
>PHA03411 putative methyltransferase; Provisional
Probab=99.01 E-value=2.2e-09 Score=93.69 Aligned_cols=73 Identities=8% Similarity=0.076 Sum_probs=60.3
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
....+|||+|||+|.+++.++...+ ..+|+++|+++.+++.+++++ .+++++++|+.+... ..+||
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~-------~~kFD 128 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES-------NEKFD 128 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc-------cCCCc
Confidence 3457999999999999999888754 479999999999999998864 258999999976532 46899
Q ss_pred EEEEcCC
Q 023411 198 FAFVDAE 204 (282)
Q Consensus 198 lV~id~~ 204 (282)
+|+++.+
T Consensus 129 lIIsNPP 135 (279)
T PHA03411 129 VVISNPP 135 (279)
T ss_pred EEEEcCC
Confidence 9999866
No 163
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.00 E-value=8.2e-09 Score=94.82 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=86.9
Q ss_pred CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~ 200 (282)
.+|||..||+|..++.++...+.-.+|+++|++++.++.+++|++.++.. +++++++|+...+... ..+||+|+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~-----~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR-----NRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh-----CCCCCEEE
Confidence 48999999999999999987542358999999999999999999998876 4899999998877654 46899999
Q ss_pred EcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 201 VDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 201 id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+|+ ......+++.+.+. +++||+|.+.
T Consensus 120 lDP-fGs~~~fld~al~~---~~~~glL~vT 146 (374)
T TIGR00308 120 IDP-FGTPAPFVDSAIQA---SAERGLLLVT 146 (374)
T ss_pred eCC-CCCcHHHHHHHHHh---cccCCEEEEE
Confidence 999 45556788888888 9999999986
No 164
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=7e-09 Score=96.84 Aligned_cols=124 Identities=21% Similarity=0.228 Sum_probs=101.7
Q ss_pred CCCCCccCHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCc
Q 023411 97 RGSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 172 (282)
Q Consensus 97 ~~~~~~~~~~~~~ll~~l~~----~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~ 172 (282)
+.++.+.++...+.|...+. ..+.++++|+-||.|.+++.+|.. ..+|+|+|+++++++.|++|++.+++.+
T Consensus 267 ~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N- 342 (432)
T COG2265 267 PRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN- 342 (432)
T ss_pred CCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-
Confidence 34677888888777776653 346789999999999999999965 3699999999999999999999999998
Q ss_pred EEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccH-HHHHHHHHhhcCCCCCcEEEEe
Q 023411 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 173 v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~-~~l~~~~~~~~~LkpgG~lv~d 231 (282)
++|+.+++.+..+... ....+|.|++|++..... .+++.+.+ ++|..++.+.
T Consensus 343 ~~f~~~~ae~~~~~~~---~~~~~d~VvvDPPR~G~~~~~lk~l~~----~~p~~IvYVS 395 (432)
T COG2265 343 VEFIAGDAEEFTPAWW---EGYKPDVVVVDPPRAGADREVLKQLAK----LKPKRIVYVS 395 (432)
T ss_pred EEEEeCCHHHHhhhcc---ccCCCCEEEECCCCCCCCHHHHHHHHh----cCCCcEEEEe
Confidence 9999999988766542 135889999999965544 67777777 5888888885
No 165
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.97 E-value=1.2e-09 Score=88.39 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=58.9
Q ss_pred CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~ 200 (282)
+.|+|+.||.|+.++.+|+.+ .+|++||+++..++.++.|.+-.|+.++++++++|+.+.++.+.. ...+|+||
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~---~~~~D~vF 74 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS---NKIFDVVF 74 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------SEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc---cccccEEE
Confidence 369999999999999999975 489999999999999999999999999999999999986654321 12289999
Q ss_pred EcCC
Q 023411 201 VDAE 204 (282)
Q Consensus 201 id~~ 204 (282)
++++
T Consensus 75 lSPP 78 (163)
T PF09445_consen 75 LSPP 78 (163)
T ss_dssp E---
T ss_pred ECCC
Confidence 9865
No 166
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.97 E-value=7.3e-09 Score=82.89 Aligned_cols=124 Identities=22% Similarity=0.142 Sum_probs=97.3
Q ss_pred CCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE
Q 023411 98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH 177 (282)
Q Consensus 98 ~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~ 177 (282)
++....++-.++.+...+....+..|||+|.|+|.+|..++++.-+...++++|.|+++.....+.+. .++++.
T Consensus 27 GaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~ 100 (194)
T COG3963 27 GAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIIN 100 (194)
T ss_pred eeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------Cccccc
Confidence 44556677788888888888888999999999999999999887667899999999999988777654 377999
Q ss_pred cchhhHHHHHHhCCCCCceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 178 GLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 178 gd~~~~l~~l~~~~~~~~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
||+.+.-..+.+.. ...||.||+.-+ .+.....++.+... |++||.++--
T Consensus 101 gda~~l~~~l~e~~-gq~~D~viS~lPll~~P~~~~iaile~~~~r---l~~gg~lvqf 155 (194)
T COG3963 101 GDAFDLRTTLGEHK-GQFFDSVISGLPLLNFPMHRRIAILESLLYR---LPAGGPLVQF 155 (194)
T ss_pred cchhhHHHHHhhcC-CCeeeeEEeccccccCcHHHHHHHHHHHHHh---cCCCCeEEEE
Confidence 99987543443322 578999998755 33355678888887 9999988763
No 167
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.97 E-value=8.7e-09 Score=85.45 Aligned_cols=122 Identities=14% Similarity=0.153 Sum_probs=88.8
Q ss_pred CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCC--------EEEEEecCccHHHHHHHHHHHhCCCCc
Q 023411 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESG--------CLVACERDARSLEVAKKYYERAGVSHK 172 (282)
Q Consensus 101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~--------~v~~iD~s~~~~~~a~~~~~~~g~~~~ 172 (282)
-.+.+..+..|..++...++..|+|--||+|.+.+..+....... +++|+|+++++++.+++|++.+++.+.
T Consensus 10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~ 89 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY 89 (179)
T ss_dssp TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence 367888888999999998999999999999999988776554222 499999999999999999999999989
Q ss_pred EEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc-----------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-----------YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 173 v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~-----------~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+.+.++|+.+.. .. .+++|.|++|.+... |..+++.+.++ +++..++++.
T Consensus 90 i~~~~~D~~~l~-~~-----~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~---l~~~~v~l~~ 150 (179)
T PF01170_consen 90 IDFIQWDARELP-LP-----DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRV---LKPRAVFLTT 150 (179)
T ss_dssp EEEEE--GGGGG-GT-----TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCH---STTCEEEEEE
T ss_pred eEEEecchhhcc-cc-----cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHH---CCCCEEEEEE
Confidence 999999998764 11 579999999987321 44556666666 9996666654
No 168
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.93 E-value=1.5e-08 Score=95.15 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=76.0
Q ss_pred CCEEEEEcccccHHHHHHHHHC---CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 120 AQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
.+.|+|+|||+|..+...+++. ....+|++||.++.+....++.++.+++.++|+++++|..++-. ..++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-E
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCce
Confidence 5689999999999988777654 12369999999999888888888899999999999999988633 5799
Q ss_pred eEEEEc-----CCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 197 DFAFVD-----AEKRMYQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 197 DlV~id-----~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
|+|+.. +..+..++-+....+. |||||+++=+.
T Consensus 260 DIIVSElLGsfg~nEl~pE~Lda~~rf---Lkp~Gi~IP~~ 297 (448)
T PF05185_consen 260 DIIVSELLGSFGDNELSPECLDAADRF---LKPDGIMIPSS 297 (448)
T ss_dssp EEEEE---BTTBTTTSHHHHHHHGGGG---EEEEEEEESSE
T ss_pred eEEEEeccCCccccccCHHHHHHHHhh---cCCCCEEeCcc
Confidence 999864 1234445555555555 99999977543
No 169
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.91 E-value=4e-09 Score=87.00 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=91.1
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.++.+|||+|||.|....++.+. ++.+.+|+|++++.+..+.+ .-+.++++|..+.+...+ +++||
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~--------rGv~Viq~Dld~gL~~f~----d~sFD 77 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA--------RGVSVIQGDLDEGLADFP----DQSFD 77 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH--------cCCCEEECCHHHhHhhCC----CCCcc
Confidence 46789999999999998888875 36899999999987654433 137899999988776654 78999
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCCC--cEEEEeCC---------CCCCcccCC-----cC---CChhhHHHHHHHHH
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRVG--GIIVIDNV---------LWHGKVADQ-----MV---NDAKTISIRNFNKN 258 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~Lkpg--G~lv~dd~---------~~~g~~~~~-----~~---~~~~~~~~~~~~~~ 258 (282)
.|++.....+....-+.+.++ ||-| +++-+-|. ++.|.+--. .| ...+-..+++|.+-
T Consensus 78 ~VIlsqtLQ~~~~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~l 154 (193)
T PF07021_consen 78 YVILSQTLQAVRRPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDL 154 (193)
T ss_pred EEehHhHHHhHhHHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHH
Confidence 999988866655555666666 6655 55556665 245553221 11 22345578888765
Q ss_pred hhhCCCeEEE
Q 023411 259 LMEDERVSIS 268 (282)
Q Consensus 259 ~~~~~~~~~~ 268 (282)
.++. ++.+.
T Consensus 155 c~~~-~i~I~ 163 (193)
T PF07021_consen 155 CREL-GIRIE 163 (193)
T ss_pred HHHC-CCEEE
Confidence 4433 55553
No 170
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.91 E-value=3e-09 Score=89.27 Aligned_cols=146 Identities=16% Similarity=0.171 Sum_probs=95.9
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.+-+++||+|||||..+..+-... .+++|||+|+.|++.|.+. |+-+ ++.++++..+++.. +.++||
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~----~~er~D 190 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDL----TQERFD 190 (287)
T ss_pred CccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhc----cCCccc
Confidence 346799999999999998887764 4899999999999888763 2222 44555665554433 268999
Q ss_pred EEEEcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCC---CCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEE--
Q 023411 198 FAFVDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNV---LWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM-- 269 (282)
Q Consensus 198 lV~id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 269 (282)
+|..-.+ .......+-....+ |+|||.+.++-= -|.+.+..|..+ ..=-+.|.+...+..+++++.
T Consensus 191 Li~AaDVl~YlG~Le~~~~~aa~~---L~~gGlfaFSvE~l~~~~~f~l~ps~R---yAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 191 LIVAADVLPYLGALEGLFAGAAGL---LAPGGLFAFSVETLPDDGGFVLGPSQR---YAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred chhhhhHHHhhcchhhHHHHHHHh---cCCCceEEEEecccCCCCCeecchhhh---hccchHHHHHHHHhcCceEEEee
Confidence 9986544 23344556666666 999999998632 233333333321 112244555555666777764
Q ss_pred ---------eecCCceEEEEEC
Q 023411 270 ---------VPIGDGMTICQKR 282 (282)
Q Consensus 270 ---------lp~~~Gl~~~~k~ 282 (282)
-|+..++-|+||+
T Consensus 265 ~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 265 DTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred cccchhhcCCCCCCceEEEecC
Confidence 3667788888874
No 171
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.91 E-value=5.2e-09 Score=87.85 Aligned_cols=95 Identities=17% Similarity=0.202 Sum_probs=65.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
++.+|||||||+|.++..++... +..++++|+++++++.+++ .+++++++|+.+.++... +++||+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~~----~~sfD~ 78 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAFP----DKSFDY 78 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhcccccC----CCCcCE
Confidence 56799999999999998888653 4678999999999887754 136888888865332121 478999
Q ss_pred EEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 199 AFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
|++....++..+....+.++ ++++|.+++
T Consensus 79 Vi~~~~l~~~~d~~~~l~e~---~r~~~~~ii 107 (194)
T TIGR02081 79 VILSQTLQATRNPEEILDEM---LRVGRHAIV 107 (194)
T ss_pred EEEhhHhHcCcCHHHHHHHH---HHhCCeEEE
Confidence 99987654443333444444 444444433
No 172
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.89 E-value=1.6e-08 Score=86.39 Aligned_cols=128 Identities=17% Similarity=0.204 Sum_probs=87.5
Q ss_pred CCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH-h------C-
Q 023411 97 RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER-A------G- 168 (282)
Q Consensus 97 ~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~------g- 168 (282)
+...-.++|....++.. ....++.+||..|||.|....+|+.. +.+|+|+|+++.+++.+.+.... . +
T Consensus 16 ~w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~ 91 (218)
T PF05724_consen 16 PWDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGF 91 (218)
T ss_dssp TT--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTE
T ss_pred CCCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccce
Confidence 34444567776666666 34556679999999999999999985 57999999999998887432211 0 0
Q ss_pred ---CCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcC-----CccccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411 169 ---VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWH 236 (282)
Q Consensus 169 ---~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~-----~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~ 236 (282)
-..+|++++||+.+..+.. .++||+|+=-. ++.....|.+.+.++ |+|||.+++-...++
T Consensus 92 ~~~~~~~i~~~~gDfF~l~~~~-----~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~l---l~p~g~~lLi~l~~~ 159 (218)
T PF05724_consen 92 KRYQAGRITIYCGDFFELPPED-----VGKFDLIYDRTFLCALPPEMRERYAQQLASL---LKPGGRGLLITLEYP 159 (218)
T ss_dssp EEETTSSEEEEES-TTTGGGSC-----HHSEEEEEECSSTTTS-GGGHHHHHHHHHHC---EEEEEEEEEEEEES-
T ss_pred eeecCCceEEEEcccccCChhh-----cCCceEEEEecccccCCHHHHHHHHHHHHHH---hCCCCcEEEEEEEcC
Confidence 1236899999998754322 35899998432 356678899999998 999999444334343
No 173
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.2e-08 Score=84.65 Aligned_cols=103 Identities=20% Similarity=0.292 Sum_probs=81.4
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCC---------CCcEEEEEcchhhHHHH
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGV---------SHKVKIKHGLAADSLKA 186 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~---------~~~v~~~~gd~~~~l~~ 186 (282)
..++.+.||+|+|+||.+.+++..+...+ ..+|||.-++.++.+++++...-- ..++.++.||.....++
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 56788999999999999999998775444 459999999999999999987541 24688999998765443
Q ss_pred HHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 187 LILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 187 l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
..+||.|++.+.....+ +.+... |++||.|++-
T Consensus 160 ------~a~YDaIhvGAaa~~~p---q~l~dq---L~~gGrllip 192 (237)
T KOG1661|consen 160 ------QAPYDAIHVGAAASELP---QELLDQ---LKPGGRLLIP 192 (237)
T ss_pred ------cCCcceEEEccCccccH---HHHHHh---hccCCeEEEe
Confidence 58999999997755443 355566 8999988873
No 174
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.89 E-value=2e-08 Score=90.43 Aligned_cols=110 Identities=20% Similarity=0.180 Sum_probs=93.8
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
...+.+|+|.-+|.|++++.+|..-. .+|+++|+||..++..++|++.|++.+++..++||+.+..+.. +.+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~------~~a 257 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL------GVA 257 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc------ccC
Confidence 34588999999999999999998743 3499999999999999999999999999999999999887753 789
Q ss_pred eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
|-|++..... ...++.....+ +++||++-++.......
T Consensus 258 DrIim~~p~~-a~~fl~~A~~~---~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 258 DRIIMGLPKS-AHEFLPLALEL---LKDGGIIHYYEFVPEDD 295 (341)
T ss_pred CEEEeCCCCc-chhhHHHHHHH---hhcCcEEEEEeccchhh
Confidence 9999988864 34567778888 99999999987764443
No 175
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=6.6e-08 Score=78.49 Aligned_cols=102 Identities=15% Similarity=0.235 Sum_probs=80.7
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
+..++|||||+|..+..+++.+.++..+.++|++|++++..++..+.++.. +..++.|..+.+. .++.|++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~-------~~~VDvL 114 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLR-------NESVDVL 114 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhc-------cCCccEE
Confidence 678999999999999999999887889999999999999999999887754 7888888776554 5899998
Q ss_pred EEcCCc------------------------cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 200 FVDAEK------------------------RMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 200 ~id~~~------------------------~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
+.+.+. .-...++.++..+ |.|.|++.+--+
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~i---LSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDI---LSPRGVFYLVAL 169 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhh---cCcCceEEeeeh
Confidence 765431 0133455666666 999999877433
No 176
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.88 E-value=9.2e-08 Score=84.99 Aligned_cols=152 Identities=20% Similarity=0.263 Sum_probs=111.4
Q ss_pred ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (282)
Q Consensus 102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (282)
.+......+...++...++..|||++++.|+-|..++..+...+.+++.|+++..+...++++++.|..+ +.++..|+.
T Consensus 68 ~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~ 146 (283)
T PF01189_consen 68 YVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADAR 146 (283)
T ss_dssp EEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHH
T ss_pred EecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccc
Confidence 4455555566667777888999999999999999999999877999999999999999999999999886 788878887
Q ss_pred hHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCC----CCCcEEEEeC
Q 023411 182 DSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQI----RVGGIIVIDN 232 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~L----kpgG~lv~dd 232 (282)
...+... ...||.|++|++... ....++.+.++ + +|||++|..-
T Consensus 147 ~~~~~~~----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~---~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 147 KLDPKKP----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKL---LNIDFKPGGRLVYST 219 (283)
T ss_dssp HHHHHHH----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHC---EHHHBEEEEEEEEEE
T ss_pred ccccccc----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHh---hcccccCCCeEEEEe
Confidence 7655442 356999999976110 22244555555 9 9999999865
Q ss_pred CCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeec
Q 023411 233 VLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPI 272 (282)
Q Consensus 233 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ 272 (282)
.-.. ..++...++.|++. .++++.+-.+.
T Consensus 220 CS~~--------~eENE~vV~~fl~~---~~~~~l~~~~~ 248 (283)
T PF01189_consen 220 CSLS--------PEENEEVVEKFLKR---HPDFELVPIPL 248 (283)
T ss_dssp SHHH--------GGGTHHHHHHHHHH---STSEEEECCES
T ss_pred ccHH--------HHHHHHHHHHHHHh---CCCcEEEeccc
Confidence 4322 22345567788763 56666654443
No 177
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.88 E-value=2.8e-08 Score=87.19 Aligned_cols=93 Identities=14% Similarity=0.087 Sum_probs=73.9
Q ss_pred CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (282)
Q Consensus 100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd 179 (282)
.+.+++.....+...+...++++|||||||+|..+..+++. ..+|+++|+++.+++.+++++.. .++++++++|
T Consensus 10 nfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D 83 (258)
T PRK14896 10 HFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGD 83 (258)
T ss_pred cccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEec
Confidence 34566666666776666677889999999999999999986 36899999999999999988754 3469999999
Q ss_pred hhhHHHHHHhCCCCCceeEEEEcCCcc
Q 023411 180 AADSLKALILNGEASSYDFAFVDAEKR 206 (282)
Q Consensus 180 ~~~~l~~l~~~~~~~~fDlV~id~~~~ 206 (282)
+.+.. ...||.|+.+.+..
T Consensus 84 ~~~~~--------~~~~d~Vv~NlPy~ 102 (258)
T PRK14896 84 ALKVD--------LPEFNKVVSNLPYQ 102 (258)
T ss_pred cccCC--------chhceEEEEcCCcc
Confidence 97642 24579998876644
No 178
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.88 E-value=2.3e-08 Score=89.87 Aligned_cols=84 Identities=14% Similarity=0.212 Sum_probs=66.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh-CCCCcEEEEE-cchhhHHHHHHhCCCCCce
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKH-GLAADSLKALILNGEASSY 196 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~-gd~~~~l~~l~~~~~~~~f 196 (282)
...+|||||||+|.+...++...+ +.+++|+|+++.+++.|+++++.+ ++.+++++++ .+..+....+.. ..+.|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~--~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH--KNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc--cCCce
Confidence 457999999999999888887765 689999999999999999999999 7988899875 344333332211 14689
Q ss_pred eEEEEcCCc
Q 023411 197 DFAFVDAEK 205 (282)
Q Consensus 197 DlV~id~~~ 205 (282)
|+|+++++.
T Consensus 191 DlivcNPPf 199 (321)
T PRK11727 191 DATLCNPPF 199 (321)
T ss_pred EEEEeCCCC
Confidence 999999873
No 179
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=6.3e-08 Score=88.67 Aligned_cols=144 Identities=18% Similarity=0.266 Sum_probs=107.1
Q ss_pred CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (282)
Q Consensus 100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g 178 (282)
...++.....+...++...++.+|||..++.|+=|..++..++. ++.|+++|+++..+...++++++.|+.+ +.+++.
T Consensus 137 ~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~ 215 (355)
T COG0144 137 LIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNK 215 (355)
T ss_pred EEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEec
Confidence 34566677777788888899999999999999999999999874 3567999999999999999999999987 888888
Q ss_pred chhhHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 179 LAADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 179 d~~~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
|+........ ..++||.|++|++... ..+.++...++ |||||+||....
T Consensus 216 d~~~~~~~~~---~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~---lk~GG~LVYSTC 289 (355)
T COG0144 216 DARRLAELLP---GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKL---LKPGGVLVYSTC 289 (355)
T ss_pred cccccccccc---ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHh---cCCCCEEEEEcc
Confidence 8754332221 0236999999976110 23355555666 999999999877
Q ss_pred CCCCcccCCcCCChhhHHHHHHHHH
Q 023411 234 LWHGKVADQMVNDAKTISIRNFNKN 258 (282)
Q Consensus 234 ~~~g~~~~~~~~~~~~~~~~~~~~~ 258 (282)
-..-. ++..-+..|++.
T Consensus 290 S~~~e--------ENE~vV~~~L~~ 306 (355)
T COG0144 290 SLTPE--------ENEEVVERFLER 306 (355)
T ss_pred CCchh--------cCHHHHHHHHHh
Confidence 54433 233445666543
No 180
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.86 E-value=1.7e-08 Score=85.38 Aligned_cols=111 Identities=17% Similarity=0.311 Sum_probs=77.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC-----------------------------
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----------------------------- 169 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----------------------------- 169 (282)
.+..+|||||-+|..|+.+++.+. .-.+.|+||++..+..|+++++..--
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 567899999999999999999986 45799999999999999998764210
Q ss_pred -----CCcEEEEEcch----hhHHHHHHhCCCCCceeEEEEcC---------CccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 170 -----SHKVKIKHGLA----ADSLKALILNGEASSYDFAFVDA---------EKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 170 -----~~~v~~~~gd~----~~~l~~l~~~~~~~~fDlV~id~---------~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
.+++.+...+. .|++.. ....||+|+|-. ..+....+|..+.++ |.|||+||++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~-----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~l---l~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDM-----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSL---LHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhh-----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHh---hCcCcEEEEc
Confidence 00111111111 112211 157999998632 233466788888888 9999999997
Q ss_pred CCCCCCc
Q 023411 232 NVLWHGK 238 (282)
Q Consensus 232 d~~~~g~ 238 (282)
-=-|..-
T Consensus 209 PQpWksY 215 (288)
T KOG2899|consen 209 PQPWKSY 215 (288)
T ss_pred CCchHHH
Confidence 6655543
No 181
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.85 E-value=1.2e-08 Score=88.44 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=82.1
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (282)
Q Consensus 111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~ 190 (282)
+.......+.++|+|||+|+|..+..+++..| +.+++.+|. |+.++.+++ .+|++++.||..+.+
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~------ 156 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPL------ 156 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCC------
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhhh------
Confidence 33444455678999999999999999999998 889999999 888888877 568999999998533
Q ss_pred CCCCceeEEEEcCCccc-----cHHHHHHHHHhhcCCCCC--cEEEEeCCCCCCc
Q 023411 191 GEASSYDFAFVDAEKRM-----YQEYFELLLQLLLQIRVG--GIIVIDNVLWHGK 238 (282)
Q Consensus 191 ~~~~~fDlV~id~~~~~-----~~~~l~~~~~~~~~Lkpg--G~lv~dd~~~~g~ 238 (282)
+. +|++++-...++ ....++.+.+. |+|| |.|++.+.+.+..
T Consensus 157 --P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~a---l~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 157 --PV-ADVYLLRHVLHDWSDEDCVKILRNAAAA---LKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp --SS-ESEEEEESSGGGS-HHHHHHHHHHHHHH---SEECTTEEEEEEEEEECSS
T ss_pred --cc-ccceeeehhhhhcchHHHHHHHHHHHHH---hCCCCCCeEEEEeeccCCC
Confidence 24 999998766544 34467777777 9999 9998888876554
No 182
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.84 E-value=2.1e-08 Score=89.82 Aligned_cols=118 Identities=20% Similarity=0.227 Sum_probs=97.5
Q ss_pred CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-c
Q 023411 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-L 179 (282)
Q Consensus 101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d 179 (282)
..+.|..+..+.++++..++..|||=-||||++.+..... +++++|+|++..|++-|+.|++..++++ ..+..+ |
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~D 254 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLD 254 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecc
Confidence 4789999999999999999999999999999998877753 6899999999999999999999999776 555555 8
Q ss_pred hhhHHHHHHhCCCCCceeEEEEcCCcc------------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 180 AADSLKALILNGEASSYDFAFVDAEKR------------MYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 180 ~~~~l~~l~~~~~~~~fDlV~id~~~~------------~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+.+. + +. +.++|.|.+|++.. -+.++++.+.++ |++||++++-
T Consensus 255 a~~l-p-l~----~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~ev---Lk~gG~~vf~ 309 (347)
T COG1041 255 ATNL-P-LR----DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEV---LKPGGRIVFA 309 (347)
T ss_pred cccC-C-CC----CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHH---hhcCcEEEEe
Confidence 8654 3 31 34699999998722 156677788888 9999998884
No 183
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.83 E-value=1.5e-08 Score=90.41 Aligned_cols=109 Identities=19% Similarity=0.252 Sum_probs=79.9
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
...+++.|||+|||+|..+.+.|++.. .+|++||.+ ++++.|++.+..+++.+.+++++|.+.+. .++ .++
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP----~eK 127 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDI--ELP----VEK 127 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEE--ecC----ccc
Confidence 356889999999999999999999753 689999987 46699999999999999999999999875 332 389
Q ss_pred eeEEEEcCC--ccccHHHHHHHH-HhhcCCCCCcEEEEeCC
Q 023411 196 YDFAFVDAE--KRMYQEYFELLL-QLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 196 fDlV~id~~--~~~~~~~l~~~~-~~~~~LkpgG~lv~dd~ 233 (282)
.|+|+..-- .--+...++.+. .--+||+|||.++=+-.
T Consensus 128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a 168 (346)
T KOG1499|consen 128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRA 168 (346)
T ss_pred eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccc
Confidence 999986421 000111111111 11356999999875533
No 184
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.83 E-value=2.1e-08 Score=89.05 Aligned_cols=83 Identities=23% Similarity=0.197 Sum_probs=69.2
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
..++..+||.+||.|+.|..+++.+++.++|+|+|.++++++.+++.+.. .++++++++|+.+....+.. + ..++
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~-~-~~~v 91 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE-G-LGKV 91 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc-C-CCcc
Confidence 35667999999999999999999987679999999999999999998765 45799999999887655432 1 2389
Q ss_pred eEEEEcCC
Q 023411 197 DFAFVDAE 204 (282)
Q Consensus 197 DlV~id~~ 204 (282)
|.|++|-+
T Consensus 92 DgIl~DLG 99 (296)
T PRK00050 92 DGILLDLG 99 (296)
T ss_pred CEEEECCC
Confidence 99998854
No 185
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.81 E-value=7.3e-08 Score=82.45 Aligned_cols=134 Identities=10% Similarity=0.006 Sum_probs=88.9
Q ss_pred CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH-----------hC
Q 023411 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER-----------AG 168 (282)
Q Consensus 100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-----------~g 168 (282)
...+++...+.+..+. ..++.+||..|||.|....+|+.. +.+|+|+|+|+.+++.+.+.... .-
T Consensus 25 ~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~ 100 (226)
T PRK13256 25 QESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLY 100 (226)
T ss_pred cCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceeccccccee
Confidence 3345555444444432 224579999999999999999985 57899999999999887552100 00
Q ss_pred CCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcC-----CccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCc
Q 023411 169 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQM 243 (282)
Q Consensus 169 ~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~-----~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~ 243 (282)
-...++++++|+.+..+.. ...++||+|+--+ +++....|.+.+.++ |+|||.+++-..-.++....|.
T Consensus 101 ~~~~i~~~~gD~f~l~~~~---~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~l---L~pgg~llll~~~~~~~~~GPP 174 (226)
T PRK13256 101 KGDDIEIYVADIFNLPKIA---NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEV---CSNNTQILLLVMEHDKKSQTPP 174 (226)
T ss_pred ccCceEEEEccCcCCCccc---cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHH---hCCCcEEEEEEEecCCCCCCCC
Confidence 1236899999998753210 0036899986432 355577789999998 9999988775444443333333
No 186
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.80 E-value=1.6e-08 Score=84.44 Aligned_cols=100 Identities=21% Similarity=0.265 Sum_probs=77.8
Q ss_pred CCccCHHH-HHHHHHHH-hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE
Q 023411 100 QMQVSPDQ-AQLLAMLV-QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH 177 (282)
Q Consensus 100 ~~~~~~~~-~~ll~~l~-~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~ 177 (282)
...+.|+. +..++..+ ....+..|+|.-||.|+.++.++... ..|++||++|.-+..|+.|++-.|+.++|+|++
T Consensus 73 wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~ 149 (263)
T KOG2730|consen 73 WFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFIC 149 (263)
T ss_pred eEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEe
Confidence 33444443 33333333 33377899999999999999988764 589999999999999999999999999999999
Q ss_pred cchhhHHHHHHhCCCCCceeEEEEcCC
Q 023411 178 GLAADSLKALILNGEASSYDFAFVDAE 204 (282)
Q Consensus 178 gd~~~~l~~l~~~~~~~~fDlV~id~~ 204 (282)
||..+....+... ...+|+||..++
T Consensus 150 GD~ld~~~~lq~~--K~~~~~vf~spp 174 (263)
T KOG2730|consen 150 GDFLDLASKLKAD--KIKYDCVFLSPP 174 (263)
T ss_pred chHHHHHHHHhhh--hheeeeeecCCC
Confidence 9999987665332 456889998765
No 187
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.80 E-value=5.8e-08 Score=92.93 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=82.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
....+||||||.|.+...+|...| +..++|+|+....+..+.+.....++.| +.++++|+......++ ++++|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~----~~sv~~ 420 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLP----NNSLDG 420 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcC----cccccE
Confidence 356899999999999999999988 7899999999999988888888888865 8898888754443332 467888
Q ss_pred EEE---cCCcc--c------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411 199 AFV---DAEKR--M------YQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 199 V~i---d~~~~--~------~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
|++ |+|+. + .+.+++.+.+. |+|||.+.+
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~---Lk~gG~i~~ 460 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDK---LKDNGNLVF 460 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHh---cCCCCEEEE
Confidence 876 55521 1 56788999998 999998876
No 188
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=8.1e-09 Score=87.40 Aligned_cols=107 Identities=20% Similarity=0.214 Sum_probs=77.4
Q ss_pred CEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
.+|||||||.|....-+.+..+. +-.++++|.+|.+++..+++..... .++.....|... +.+....+.+++|+|
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~--~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTS--PSLKEPPEEGSVDII 148 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccc--hhccCCCCcCccceE
Confidence 37999999999999999987762 2689999999999999888765432 344444444432 222222246788876
Q ss_pred EE-----cCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 200 FV-----DAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 200 ~i-----d~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
.+ ...++.....++.+.++ |||||.|++-|..
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~l---lKPGG~llfrDYg 185 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTL---LKPGGSLLFRDYG 185 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHH---hCCCcEEEEeecc
Confidence 43 23355677788889888 9999999998875
No 189
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.79 E-value=4.4e-08 Score=86.64 Aligned_cols=103 Identities=11% Similarity=0.018 Sum_probs=74.5
Q ss_pred CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (282)
Q Consensus 101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (282)
+.+++.....+...+...++.+|||||||+|..+..+++.. .+|+++|+++++++.+++++.. .+++++++|+
T Consensus 24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~ 96 (272)
T PRK00274 24 FLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDA 96 (272)
T ss_pred cCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChh
Confidence 44555555555555566677899999999999999999874 4899999999999999887642 4699999999
Q ss_pred hhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHH
Q 023411 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL 216 (282)
Q Consensus 181 ~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~ 216 (282)
.+.... .-.+|.|+.+.+..-....+..+.
T Consensus 97 ~~~~~~------~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 97 LKVDLS------ELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred hcCCHH------HcCcceEEEeCCccchHHHHHHHH
Confidence 865211 111578887766554444444443
No 190
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.77 E-value=8.3e-08 Score=83.96 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=71.0
Q ss_pred CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (282)
Q Consensus 101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (282)
+.+++.....+...+...++.+|||||||+|..+..+++..+ +|+++|+++.+++.+++++.. ..+++++++|+
T Consensus 11 fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~ 84 (253)
T TIGR00755 11 FLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDA 84 (253)
T ss_pred cCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEEECch
Confidence 445566655566666666788999999999999999998753 699999999999999887743 34699999999
Q ss_pred hhHHHHHHhCCCCCcee---EEEEcCCccccHHH
Q 023411 181 ADSLKALILNGEASSYD---FAFVDAEKRMYQEY 211 (282)
Q Consensus 181 ~~~l~~l~~~~~~~~fD---lV~id~~~~~~~~~ 211 (282)
.+... ..+| +|+.+.+.......
T Consensus 85 ~~~~~--------~~~d~~~~vvsNlPy~i~~~i 110 (253)
T TIGR00755 85 LKVDL--------PDFPKQLKVVSNLPYNISSPL 110 (253)
T ss_pred hcCCh--------hHcCCcceEEEcCChhhHHHH
Confidence 76432 2344 67666554433333
No 191
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.77 E-value=1e-08 Score=86.20 Aligned_cols=138 Identities=18% Similarity=0.203 Sum_probs=85.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
...+.||+|+|.|..|..++... --+|..||..+.+++.|++++.... ....++++....++.|. ..+||+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~------~~~YDl 125 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE------EGKYDL 125 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----------TT-EEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC------CCcEeE
Confidence 45699999999999998766433 2589999999999999998776421 23357777777777664 479999
Q ss_pred EEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEE-eCCCCCCc-ccCCcCCChhhHHHHHHHHHhhhCCCeEEEEe
Q 023411 199 AFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVI-DNVLWHGK-VADQMVNDAKTISIRNFNKNLMEDERVSISMV 270 (282)
Q Consensus 199 V~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~-dd~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 270 (282)
|++.-. ..+...+++.|... |+|||+||+ +|+...|. +.++.+..- |.....| +.+.++.+++++.-
T Consensus 126 IW~QW~lghLTD~dlv~fL~RCk~~---L~~~G~IvvKEN~~~~~~~~~D~~DsSv-TRs~~~~-~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 126 IWIQWCLGHLTDEDLVAFLKRCKQA---LKPNGVIVVKENVSSSGFDEFDEEDSSV-TRSDEHF-RELFKQAGLRLVKE 199 (218)
T ss_dssp EEEES-GGGS-HHHHHHHHHHHHHH---EEEEEEEEEEEEEESSSEEEEETTTTEE-EEEHHHH-HHHHHHCT-EEEEE
T ss_pred EEehHhhccCCHHHHHHHHHHHHHh---CcCCcEEEEEecCCCCCCcccCCccCee-ecCHHHH-HHHHHHcCCEEEEe
Confidence 998754 33466688888888 999999999 56655554 444443221 1122222 23334456666543
No 192
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.75 E-value=5.8e-08 Score=81.22 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=83.9
Q ss_pred EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH--hCCCCCceeEE
Q 023411 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI--LNGEASSYDFA 199 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~--~~~~~~~fDlV 199 (282)
+|||||||||-.+.++++.+| ..+-...|.++....-.++.+...++.+-..-+.-|+.+...... .....++||.|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 599999999999999999998 688889999998888888888888876533444445443211110 00014699999
Q ss_pred EEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCCCC-CCcccCC
Q 023411 200 FVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNVLW-HGKVADQ 242 (282)
Q Consensus 200 ~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~-~g~~~~~ 242 (282)
|+-+. ......+|+.+.++ |++||+|++-..+. +|....+
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~---L~~gG~L~~YGPF~~~G~~ts~ 152 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARL---LKPGGLLFLYGPFNRDGKFTSE 152 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHh---CCCCCEEEEeCCcccCCEeCCc
Confidence 98644 33455677888887 99999999988774 4544433
No 193
>PRK00536 speE spermidine synthase; Provisional
Probab=98.72 E-value=1.8e-07 Score=81.71 Aligned_cols=100 Identities=9% Similarity=0.070 Sum_probs=78.5
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC---CCCcEEEEEcchhhHHHHHHhCCC
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADSLKALILNGE 192 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~v~~~~gd~~~~l~~l~~~~~ 192 (282)
....+++||=||.|-|.....++++ + .+|+-||++++.++.+++.+.... -+.|++++.. . ... .
T Consensus 69 ~h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~-~~~----~ 136 (262)
T PRK00536 69 TKKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----L-LDL----D 136 (262)
T ss_pred hCCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----h-hhc----c
Confidence 3457899999999999999999987 3 399999999999999999665421 2467888751 1 111 1
Q ss_pred CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
.++||+|++|... ..++++.+.+. |+|||+++.+.
T Consensus 137 ~~~fDVIIvDs~~--~~~fy~~~~~~---L~~~Gi~v~Qs 171 (262)
T PRK00536 137 IKKYDLIICLQEP--DIHKIDGLKRM---LKEDGVFISVA 171 (262)
T ss_pred CCcCCEEEEcCCC--ChHHHHHHHHh---cCCCcEEEECC
Confidence 3789999999653 35778889998 99999999964
No 194
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.67 E-value=2.6e-08 Score=84.38 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=69.2
Q ss_pred HHHHHHhhcCCC-EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411 110 LLAMLVQILGAQ-RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (282)
Q Consensus 110 ll~~l~~~~~~~-~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~ 188 (282)
++..++...++. .++|+|||+|..++.++.+. -+|+|+|+++.|++.|++..+..-.....++...+..+ +
T Consensus 23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~----L- 94 (261)
T KOG3010|consen 23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVD----L- 94 (261)
T ss_pred HHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCcccccccccc----c-
Confidence 334444333332 79999999997778788775 48999999999999888754321111111111111111 1
Q ss_pred hCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCCCc-EEEE
Q 023411 189 LNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRVGG-IIVI 230 (282)
Q Consensus 189 ~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~LkpgG-~lv~ 230 (282)
.+.+++.|+|.+--.. =+...+++.+.++ ||+.| ++.+
T Consensus 95 -~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rv---LRk~Gg~iav 135 (261)
T KOG3010|consen 95 -LGGEESVDLITAAQAVHWFDLERFYKEAYRV---LRKDGGLIAV 135 (261)
T ss_pred -cCCCcceeeehhhhhHHhhchHHHHHHHHHH---cCCCCCEEEE
Confidence 1126899999875432 2466788889888 98876 7766
No 195
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.67 E-value=1.7e-07 Score=77.89 Aligned_cols=96 Identities=20% Similarity=0.382 Sum_probs=80.6
Q ss_pred EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i 201 (282)
+++|||+|.|.-++.++-..| +.+++.+|....-+...+......|+++ ++++++++.+ +.. ..+||+|+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~--~~~-----~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE--PEY-----RESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH--TTT-----TT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc--ccc-----CCCccEEEe
Confidence 899999999999999998887 7899999999999999999999999985 9999999976 111 689999999
Q ss_pred cCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 202 DAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 202 d~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
-+... ...+++.+.++ +++||.+++
T Consensus 122 RAv~~-l~~l~~~~~~~---l~~~G~~l~ 146 (184)
T PF02527_consen 122 RAVAP-LDKLLELARPL---LKPGGRLLA 146 (184)
T ss_dssp ESSSS-HHHHHHHHGGG---EEEEEEEEE
T ss_pred ehhcC-HHHHHHHHHHh---cCCCCEEEE
Confidence 88754 55778889998 999999887
No 196
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.66 E-value=6.4e-08 Score=80.94 Aligned_cols=96 Identities=15% Similarity=0.173 Sum_probs=68.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
.+.-|||||||+|.++..+... +-..+|+|+|+.|++.|.+.- ++ -.++.+|.-+-+|.- ++.||-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e----~e--gdlil~DMG~Glpfr-----pGtFDg 115 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERE----LE--GDLILCDMGEGLPFR-----PGTFDG 115 (270)
T ss_pred CCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhh----hh--cCeeeeecCCCCCCC-----CCccce
Confidence 3678999999999998877652 457899999999999998722 22 256777776555543 699998
Q ss_pred EEEc--------CC------ccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 199 AFVD--------AE------KRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 199 V~id--------~~------~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+++- +. ......||..+..+ |++|+.-|+.
T Consensus 116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~---l~rg~raV~Q 159 (270)
T KOG1541|consen 116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSC---LKRGARAVLQ 159 (270)
T ss_pred EEEeeeeeeecccCccccChHHHHHHHhhhhhhh---hccCceeEEE
Confidence 8742 22 12234467767777 8888887774
No 197
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.65 E-value=1.9e-07 Score=85.54 Aligned_cols=115 Identities=23% Similarity=0.243 Sum_probs=72.7
Q ss_pred CCCCCccCHHHHHHHHHHHh-hc--CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcE
Q 023411 97 RGSQMQVSPDQAQLLAMLVQ-IL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 173 (282)
Q Consensus 97 ~~~~~~~~~~~~~ll~~l~~-~~--~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v 173 (282)
+.++.++++.+.+.+...+. .. .+..|||+.||.|.+++.+|... .+|+|||+++++++.|++|++.+++.+ +
T Consensus 171 ~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n-~ 246 (352)
T PF05958_consen 171 PGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDN-V 246 (352)
T ss_dssp TTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--S-E
T ss_pred CCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCc-c
Confidence 45677788877766666543 21 23389999999999999999864 589999999999999999999999975 9
Q ss_pred EEEEcchhhHHHHHHh---------C-CCCCceeEEEEcCCccccH-HHHHHH
Q 023411 174 KIKHGLAADSLKALIL---------N-GEASSYDFAFVDAEKRMYQ-EYFELL 215 (282)
Q Consensus 174 ~~~~gd~~~~l~~l~~---------~-~~~~~fDlV~id~~~~~~~-~~l~~~ 215 (282)
+|+.+++.+....+.. . .....+|+|++|++..... ...+.+
T Consensus 247 ~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 247 EFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI 299 (352)
T ss_dssp EEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred eEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence 9999888654332210 0 0123689999999854433 344444
No 198
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.64 E-value=8.3e-07 Score=77.54 Aligned_cols=123 Identities=16% Similarity=0.241 Sum_probs=94.1
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh
Q 023411 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189 (282)
Q Consensus 111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~ 189 (282)
+..+.....+-+||||.||.|...+-.....|. ..++...|.++..++..++.++..|+.+.++|.++|+.+... +..
T Consensus 127 i~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~-l~~ 205 (311)
T PF12147_consen 127 IARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS-LAA 205 (311)
T ss_pred HHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH-hhc
Confidence 334444457889999999999999888888774 368999999999999999999999999977999999987522 111
Q ss_pred CCCCCceeEEEEcCCcccc------HHHHHHHHHhhcCCCCCcEEEEeCCCCCCcc
Q 023411 190 NGEASSYDFAFVDAEKRMY------QEYFELLLQLLLQIRVGGIIVIDNVLWHGKV 239 (282)
Q Consensus 190 ~~~~~~fDlV~id~~~~~~------~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~ 239 (282)
- ....+++++.+..+-+ ...+.-+... +.|||+||..+-=|+-..
T Consensus 206 l--~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~a---l~pgG~lIyTgQPwHPQl 256 (311)
T PF12147_consen 206 L--DPAPTLAIVSGLYELFPDNDLVRRSLAGLARA---LEPGGYLIYTGQPWHPQL 256 (311)
T ss_pred c--CCCCCEEEEecchhhCCcHHHHHHHHHHHHHH---hCCCcEEEEcCCCCCcch
Confidence 0 4567999988764432 2234445555 999999999887777653
No 199
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=7.7e-07 Score=77.31 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=78.1
Q ss_pred CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (282)
Q Consensus 101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (282)
+..+.....-+...+...+++.|||||+|.|..|..+++.. .+|++||+++.+++..++.+. ..++++++++|+
T Consensus 12 FL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~Da 85 (259)
T COG0030 12 FLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDA 85 (259)
T ss_pred cccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc---cccceEEEeCch
Confidence 34455555555556666678899999999999999999874 589999999999999888876 345799999999
Q ss_pred hhHH-HHHHhCCCCCceeEEEEcCCccccHHHHHHHHH
Q 023411 181 ADSL-KALILNGEASSYDFAFVDAEKRMYQEYFELLLQ 217 (282)
Q Consensus 181 ~~~l-~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~ 217 (282)
.... +.+ ..++.|+.+-+..-....+..+..
T Consensus 86 Lk~d~~~l------~~~~~vVaNlPY~Isspii~kll~ 117 (259)
T COG0030 86 LKFDFPSL------AQPYKVVANLPYNISSPILFKLLE 117 (259)
T ss_pred hcCcchhh------cCCCEEEEcCCCcccHHHHHHHHh
Confidence 8752 221 167889988876655554444433
No 200
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.61 E-value=1.5e-07 Score=83.18 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=76.9
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
..++.|||+|||+|..+...+.+- ..+|++||.| +|.+.|++.++.+.+.+|++++.|...|+ .+ .++.|
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL-----PEk~D 245 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI--EL-----PEKVD 245 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc--cC-----chhcc
Confidence 357899999999999999988864 3689999997 69999999999999999999999998764 22 58899
Q ss_pred EEEEcCCccc--cHHHHHHHHHhhcCCCCCcEEEE
Q 023411 198 FAFVDAEKRM--YQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 198 lV~id~~~~~--~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
+|+...-.-. ....++......++|+|.|.++-
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 9997643110 11122222222345999998753
No 201
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.60 E-value=2.9e-07 Score=83.32 Aligned_cols=107 Identities=10% Similarity=0.121 Sum_probs=69.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC---------CCCcEEEEEcchhhH-HHHHH
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---------VSHKVKIKHGLAADS-LKALI 188 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---------~~~~v~~~~gd~~~~-l~~l~ 188 (282)
++.+|||+|||-|+...-+..+- -.+++|+|++++.++.|+++++... ..-...++.+|.... +....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 66799999999888776666642 3799999999999999999994321 112467888887542 22111
Q ss_pred hCCCCCceeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 189 LNGEASSYDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 189 ~~~~~~~fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
.. ...+||+|=|--..+ ....+++.+... |+|||+++..
T Consensus 140 ~~-~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~---Lk~GG~FIgT 185 (331)
T PF03291_consen 140 PP-RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSL---LKPGGYFIGT 185 (331)
T ss_dssp SS-TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHT---EEEEEEEEEE
T ss_pred cc-cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHh---cCCCCEEEEE
Confidence 11 135999998764422 234466677676 9999999874
No 202
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.56 E-value=2.3e-07 Score=73.09 Aligned_cols=112 Identities=18% Similarity=0.265 Sum_probs=77.3
Q ss_pred EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC------------ccccHHHHH
Q 023411 146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE------------KRMYQEYFE 213 (282)
Q Consensus 146 ~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~------------~~~~~~~l~ 213 (282)
+|+++|+.+++++.++++++..++.+++++++.+-......+. .+++|+++.+-+ .+.....++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP----EGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 6899999999999999999999999999999987655443331 248999876422 122445677
Q ss_pred HHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEee
Q 023411 214 LLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVP 271 (282)
Q Consensus 214 ~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 271 (282)
.+.++ |+|||+|++ +.++|. +.+.+...++.+|.+.+.. ..|.+....
T Consensus 77 ~al~l---L~~gG~i~i--v~Y~GH----~gG~eE~~av~~~~~~L~~-~~~~V~~~~ 124 (140)
T PF06962_consen 77 AALEL---LKPGGIITI--VVYPGH----PGGKEESEAVEEFLASLDQ-KEFNVLKYQ 124 (140)
T ss_dssp HHHHH---EEEEEEEEE--EE--ST----CHHHHHHHHHHHHHHTS-T-TTEEEEEEE
T ss_pred HHHHh---hccCCEEEE--EEeCCC----CCCHHHHHHHHHHHHhCCc-ceEEEEEEE
Confidence 77777 999999999 888887 2344667899999988743 367766543
No 203
>PRK04148 hypothetical protein; Provisional
Probab=98.56 E-value=7.5e-07 Score=69.77 Aligned_cols=93 Identities=11% Similarity=0.052 Sum_probs=66.8
Q ss_pred HHHHHHhhcCCCEEEEEcccccH-HHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411 110 LLAMLVQILGAQRCIEVGVYTGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (282)
Q Consensus 110 ll~~l~~~~~~~~VLEIG~G~G~-~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~ 188 (282)
++.......++.+|+|||||+|. .+..+++. +..|+++|+++..++.++++ .++++.+|..+.-..+
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~- 74 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI- 74 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH-
Confidence 34443333456789999999997 66667753 57999999999988777654 2688999988754444
Q ss_pred hCCCCCceeEEEEcCCccccHHHHHHHHHh
Q 023411 189 LNGEASSYDFAFVDAEKRMYQEYFELLLQL 218 (282)
Q Consensus 189 ~~~~~~~fDlV~id~~~~~~~~~l~~~~~~ 218 (282)
-+.+|+|+.--++.+....+-.+.+-
T Consensus 75 ----y~~a~liysirpp~el~~~~~~la~~ 100 (134)
T PRK04148 75 ----YKNAKLIYSIRPPRDLQPFILELAKK 100 (134)
T ss_pred ----HhcCCEEEEeCCCHHHHHHHHHHHHH
Confidence 37899999887766666655555543
No 204
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=4.4e-07 Score=71.14 Aligned_cols=91 Identities=16% Similarity=0.264 Sum_probs=69.8
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
..++.++|+|||+|..+..++ ++....|+|+|++|++++.+.+|.++..+. +.+.++|+.+.... .+.||
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~------~g~fD 116 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK------GGIFD 116 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc------CCeEe
Confidence 367899999999999884443 454568999999999999999999988775 69999999875443 48999
Q ss_pred EEEEcCCc-----cccHHHHHHHHHh
Q 023411 198 FAFVDAEK-----RMYQEYFELLLQL 218 (282)
Q Consensus 198 lV~id~~~-----~~~~~~l~~~~~~ 218 (282)
.++++.+. ..-.++.....++
T Consensus 117 taviNppFGTk~~~aDm~fv~~al~~ 142 (185)
T KOG3420|consen 117 TAVINPPFGTKKKGADMEFVSAALKV 142 (185)
T ss_pred eEEecCCCCcccccccHHHHHHHHHH
Confidence 99999762 2234455555554
No 205
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=5.2e-07 Score=84.08 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=94.7
Q ss_pred CCCCCccCHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCc
Q 023411 97 RGSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 172 (282)
Q Consensus 97 ~~~~~~~~~~~~~ll~~l~~----~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~ 172 (282)
+++.++.+...++.+...+. ....+.++|+.||||.+++.+++.. .+|+|||++++.++.|+.+.+.+|+++
T Consensus 357 p~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisN- 432 (534)
T KOG2187|consen 357 PGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISN- 432 (534)
T ss_pred CchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccc-
Confidence 34566777777777777665 3456789999999999999999875 589999999999999999999999986
Q ss_pred EEEEEcchhhHHHHHHhCCCCCcee-EEEEcCCcc-ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 173 VKIKHGLAADSLKALILNGEASSYD-FAFVDAEKR-MYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 173 v~~~~gd~~~~l~~l~~~~~~~~fD-lV~id~~~~-~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
.+|++|.+.+..+.+.... .++=+ ++++|.+.. -...+++.+... -++--++.+.
T Consensus 433 a~Fi~gqaE~~~~sl~~~~-~~~~~~v~iiDPpR~Glh~~~ik~l~~~---~~~~rlvyvS 489 (534)
T KOG2187|consen 433 ATFIVGQAEDLFPSLLTPC-CDSETLVAIIDPPRKGLHMKVIKALRAY---KNPRRLVYVS 489 (534)
T ss_pred eeeeecchhhccchhcccC-CCCCceEEEECCCcccccHHHHHHHHhc---cCccceEEEE
Confidence 9999998888777765332 12345 667887743 344566666665 4455555554
No 206
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.52 E-value=5.9e-07 Score=77.46 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=71.1
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (282)
Q Consensus 109 ~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~ 188 (282)
.-+..-+...+++.|||||.|||..|..+.+. +.+|+++|+++.++....+.++....+++.++++||.....
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d---- 120 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD---- 120 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC----
Confidence 33444455678889999999999999999986 47999999999999999999987777789999999997641
Q ss_pred hCCCCCceeEEEEcCCcc
Q 023411 189 LNGEASSYDFAFVDAEKR 206 (282)
Q Consensus 189 ~~~~~~~fDlV~id~~~~ 206 (282)
...||.++.+-+..
T Consensus 121 ----~P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 121 ----LPRFDGCVSNLPYQ 134 (315)
T ss_pred ----CcccceeeccCCcc
Confidence 36789998765543
No 207
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.49 E-value=8e-07 Score=75.25 Aligned_cols=98 Identities=23% Similarity=0.412 Sum_probs=82.1
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc-eeE
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS-YDF 198 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~-fDl 198 (282)
+++++|||+|.|.-++-+|-..| +.+|+-+|.....+...++...+.++++ ++++++.+.+..+. .. ||+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~-------~~~~D~ 138 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQE-------KKQYDV 138 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhcccc-------cccCcE
Confidence 68999999999999999997666 6779999999999999999999999985 99999999765432 23 999
Q ss_pred EEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 199 AFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
|.+-+... .....+.+.++ +++||.+++
T Consensus 139 vtsRAva~-L~~l~e~~~pl---lk~~g~~~~ 166 (215)
T COG0357 139 VTSRAVAS-LNVLLELCLPL---LKVGGGFLA 166 (215)
T ss_pred EEeehccc-hHHHHHHHHHh---cccCCcchh
Confidence 99877643 45678889999 999988765
No 208
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.49 E-value=5.4e-07 Score=77.68 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=92.7
Q ss_pred CCCCccCHHHHHHHHHHH-----hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCc
Q 023411 98 GSQMQVSPDQAQLLAMLV-----QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 172 (282)
Q Consensus 98 ~~~~~~~~~~~~ll~~l~-----~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~ 172 (282)
++.+..+.++..-+.... ......++||||+|.|..|..++..+. +|++.|.|+.|.. ++++.|.
T Consensus 68 G~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~----rL~~kg~--- 137 (265)
T PF05219_consen 68 GSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRW----RLSKKGF--- 137 (265)
T ss_pred CcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHH----HHHhCCC---
Confidence 444556666654444433 122567899999999999999999875 7999999998854 3444443
Q ss_pred EEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCCCC-------CC-cccC
Q 023411 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNVLW-------HG-KVAD 241 (282)
Q Consensus 173 v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~~-------~g-~~~~ 241 (282)
+++. ..++ .+. +.+||+|-|-+.... ....++.+++. |+|+|++++.=|+. ++ .-..
T Consensus 138 -~vl~--~~~w-~~~-----~~~fDvIscLNvLDRc~~P~~LL~~i~~~---l~p~G~lilAvVlP~~pyVE~~~g~~~~ 205 (265)
T PF05219_consen 138 -TVLD--IDDW-QQT-----DFKFDVISCLNVLDRCDRPLTLLRDIRRA---LKPNGRLILAVVLPFRPYVEFGGGKSNR 205 (265)
T ss_pred -eEEe--hhhh-hcc-----CCceEEEeehhhhhccCCHHHHHHHHHHH---hCCCCEEEEEEEecccccEEcCCCCCCC
Confidence 3332 2222 211 468999998776443 44456666666 99999999986651 11 1111
Q ss_pred CcC-----CChhhHHHHHHHHHhhhCCCeEEE
Q 023411 242 QMV-----NDAKTISIRNFNKNLMEDERVSIS 268 (282)
Q Consensus 242 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 268 (282)
|.. +..-...+..|. .+.+..+|++.
T Consensus 206 P~e~l~~~g~~~E~~v~~l~-~v~~p~GF~v~ 236 (265)
T PF05219_consen 206 PSELLPVKGATFEEQVSSLV-NVFEPAGFEVE 236 (265)
T ss_pred chhhcCCCCCcHHHHHHHHH-HHHHhcCCEEE
Confidence 211 111124566777 56667788775
No 209
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.48 E-value=1.7e-07 Score=76.29 Aligned_cols=78 Identities=12% Similarity=0.047 Sum_probs=58.3
Q ss_pred EEEecCccHHHHHHHHHHHh--CCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc---cccHHHHHHHHHhhcCC
Q 023411 148 VACERDARSLEVAKKYYERA--GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK---RMYQEYFELLLQLLLQI 222 (282)
Q Consensus 148 ~~iD~s~~~~~~a~~~~~~~--g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~---~~~~~~l~~~~~~~~~L 222 (282)
+|+|+|++|++.|+++.+.. +..++++++++|+.+. +.. +++||+|++.... .+....++++.++ |
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~~-----~~~fD~v~~~~~l~~~~d~~~~l~ei~rv---L 71 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PFD-----DCEFDAVTMGYGLRNVVDRLRAMKEMYRV---L 71 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CCC-----CCCeeEEEecchhhcCCCHHHHHHHHHHH---c
Confidence 48999999999998776532 2234699999999754 321 5789999987553 3456677777777 9
Q ss_pred CCCcEEEEeCCC
Q 023411 223 RVGGIIVIDNVL 234 (282)
Q Consensus 223 kpgG~lv~dd~~ 234 (282)
||||.+++.+..
T Consensus 72 kpGG~l~i~d~~ 83 (160)
T PLN02232 72 KPGSRVSILDFN 83 (160)
T ss_pred CcCeEEEEEECC
Confidence 999999887664
No 210
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.42 E-value=1.5e-06 Score=76.33 Aligned_cols=103 Identities=19% Similarity=0.224 Sum_probs=68.2
Q ss_pred CCEEEEEccccc-HHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHH-HhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 120 AQRCIEVGVYTG-YSSLAIALVLPESGCLVACERDARSLEVAKKYYE-RAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 120 ~~~VLEIG~G~G-~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~-~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
+++|+=||||.= ..++.+++....++.|+++|+++++.+.+++.++ ..|+..+++|+.+|..+...++ ..||
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl------~~~D 194 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL------KEYD 194 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------S
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc------ccCC
Confidence 469999999954 4556666543336789999999999999999888 6678889999999997654332 6899
Q ss_pred EEEEcCCcc----ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 198 FAFVDAEKR----MYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 198 lV~id~~~~----~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+||+-+-.. .-...++.+.+. ++||..|++-
T Consensus 195 vV~lAalVg~~~e~K~~Il~~l~~~---m~~ga~l~~R 229 (276)
T PF03059_consen 195 VVFLAALVGMDAEPKEEILEHLAKH---MAPGARLVVR 229 (276)
T ss_dssp EEEE-TT-S----SHHHHHHHHHHH---S-TTSEEEEE
T ss_pred EEEEhhhcccccchHHHHHHHHHhh---CCCCcEEEEe
Confidence 999976644 667788999998 9999999986
No 211
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=98.42 E-value=4.2e-07 Score=78.71 Aligned_cols=134 Identities=22% Similarity=0.319 Sum_probs=82.1
Q ss_pred cCCCEEEEEcccccHHHHHHHHHC---C-CCCEEEEEecCc--------------------------cHHHHHHHHHHHh
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVL---P-ESGCLVACERDA--------------------------RSLEVAKKYYERA 167 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~---~-~~~~v~~iD~s~--------------------------~~~~~a~~~~~~~ 167 (282)
.-+..|+|+||..|.+++.++..+ . .+-+++++|--+ ...+..++++...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 456799999999999887765432 2 234688888321 1244555666655
Q ss_pred CC-CCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC-ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCC
Q 023411 168 GV-SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVN 245 (282)
Q Consensus 168 g~-~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~-~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~ 245 (282)
|+ .++++++.|.+.+.++..+ .+++-++.+|++ .+.....++.+.+. |.|||+|++||..++|.
T Consensus 153 gl~~~~v~~vkG~F~dTLp~~p----~~~IAll~lD~DlYesT~~aLe~lypr---l~~GGiIi~DDY~~~gc------- 218 (248)
T PF05711_consen 153 GLLDDNVRFVKGWFPDTLPDAP----IERIALLHLDCDLYESTKDALEFLYPR---LSPGGIIIFDDYGHPGC------- 218 (248)
T ss_dssp TTSSTTEEEEES-HHHHCCC-T----T--EEEEEE---SHHHHHHHHHHHGGG---EEEEEEEEESSTTTHHH-------
T ss_pred CCCcccEEEECCcchhhhccCC----CccEEEEEEeccchHHHHHHHHHHHhh---cCCCeEEEEeCCCChHH-------
Confidence 64 4679999999988877543 468888889987 45566678888887 99999999999877443
Q ss_pred ChhhHHHHHHHHHhhhCCCeEEEEeec
Q 023411 246 DAKTISIRNFNKNLMEDERVSISMVPI 272 (282)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~lp~ 272 (282)
+.|+.+|.+.. ++...+.++
T Consensus 219 ---r~AvdeF~~~~----gi~~~l~~i 238 (248)
T PF05711_consen 219 ---RKAVDEFRAEH----GITDPLHPI 238 (248)
T ss_dssp ---HHHHHHHHHHT----T--S--EE-
T ss_pred ---HHHHHHHHHHc----CCCCccEEe
Confidence 56788886543 344445555
No 212
>PRK10742 putative methyltransferase; Provisional
Probab=98.41 E-value=2.1e-06 Score=74.01 Aligned_cols=90 Identities=16% Similarity=0.227 Sum_probs=74.1
Q ss_pred HHHHHHHhhcCCC--EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh------C--CCCcEEEEEc
Q 023411 109 QLLAMLVQILGAQ--RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA------G--VSHKVKIKHG 178 (282)
Q Consensus 109 ~ll~~l~~~~~~~--~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~------g--~~~~v~~~~g 178 (282)
+.+...+..+++. +|||.-+|+|..++.++.. +++|+++|.++......+++++.. + +..+++++++
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 3466666666666 9999999999999999985 678999999999999999999885 2 2257999999
Q ss_pred chhhHHHHHHhCCCCCceeEEEEcCCcc
Q 023411 179 LAADSLKALILNGEASSYDFAFVDAEKR 206 (282)
Q Consensus 179 d~~~~l~~l~~~~~~~~fDlV~id~~~~ 206 (282)
|+.+++... .+.||+||+|+..+
T Consensus 153 da~~~L~~~-----~~~fDVVYlDPMfp 175 (250)
T PRK10742 153 SSLTALTDI-----TPRPQVVYLDPMFP 175 (250)
T ss_pred cHHHHHhhC-----CCCCcEEEECCCCC
Confidence 999988764 46899999997733
No 213
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=5.6e-06 Score=69.33 Aligned_cols=101 Identities=20% Similarity=0.185 Sum_probs=72.8
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh--HHHHHHhCCCCCc
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEASS 195 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~l~~~~~~~~ 195 (282)
.++..|+|+|+..|+|+..+++.++++++|++||+.|-- .-..|.++++|+.+ ....+...-....
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHcCCCC
Confidence 467899999999999999999999877889999998742 12239999999865 3333333222456
Q ss_pred eeEEEEcCCc--------ccc------HHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 196 YDFAFVDAEK--------RMY------QEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 196 fDlV~id~~~--------~~~------~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
+|+|++|..+ ++. ...++.+... |+|||.+++...
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~v---L~~~G~fv~K~f 160 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEV---LKPGGSFVAKVF 160 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHe---eCCCCeEEEEEE
Confidence 7999999764 221 1234444555 999999999644
No 214
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.36 E-value=6.3e-06 Score=73.91 Aligned_cols=106 Identities=20% Similarity=0.295 Sum_probs=82.9
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHH--HHh---C-CCCcEEEEEcchhhHHHHHHhCC
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY--ERA---G-VSHKVKIKHGLAADSLKALILNG 191 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~--~~~---g-~~~~v~~~~gd~~~~l~~l~~~~ 191 (282)
...++||-+|.|.|.-...+.+ .|.-.+++-+|++|++++.++.+. ... . .+.|++++..|+..++...
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a---- 362 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA---- 362 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence 4677999999999998888887 454589999999999999998432 221 1 2368999999999998776
Q ss_pred CCCceeEEEEcCCccc--------cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 192 EASSYDFAFVDAEKRM--------YQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 192 ~~~~fDlV~id~~~~~--------~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
.+.||+|++|-..+. ..++...+.+. |+++|.+|++.
T Consensus 363 -~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~---l~e~Gl~VvQa 407 (508)
T COG4262 363 -ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRH---LAETGLMVVQA 407 (508)
T ss_pred -cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHh---cCcCceEEEec
Confidence 579999999855322 34466666777 99999999974
No 215
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.35 E-value=3.9e-06 Score=83.54 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=78.5
Q ss_pred CccCHHHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHHHC---CC---------------------------------
Q 023411 101 MQVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVL---PE--------------------------------- 143 (282)
Q Consensus 101 ~~~~~~~~~ll~~l~~~-~~~~~VLEIG~G~G~~t~~la~~~---~~--------------------------------- 143 (282)
..+.+..+..+..++.. .+...++|-+||+|.+.+..+... ++
T Consensus 171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 34666677666677665 567899999999999998876531 11
Q ss_pred -----CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc
Q 023411 144 -----SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK 205 (282)
Q Consensus 144 -----~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~ 205 (282)
..+++|+|+++.+++.|++|+..+|+.+++++.++|+.+..... ..++||+|+++++.
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----~~~~~d~IvtNPPY 313 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----PKGPTGLVISNPPY 313 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----ccCCCCEEEECCCC
Confidence 23799999999999999999999999988999999997653211 12579999999773
No 216
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.32 E-value=3.2e-06 Score=71.49 Aligned_cols=75 Identities=17% Similarity=0.280 Sum_probs=57.9
Q ss_pred EEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEc
Q 023411 123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD 202 (282)
Q Consensus 123 VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id 202 (282)
|.||||-.|+..+++++... ..+++++|+++..++.|+++++..|+.++++++.+|..+.++. .+..|.|++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~------~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP------GEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G------GG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC------CCCCCEEEEe
Confidence 68999999999999998643 4589999999999999999999999999999999999887652 2337888775
Q ss_pred CC
Q 023411 203 AE 204 (282)
Q Consensus 203 ~~ 204 (282)
+-
T Consensus 74 GM 75 (205)
T PF04816_consen 74 GM 75 (205)
T ss_dssp EE
T ss_pred cC
Confidence 43
No 217
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.31 E-value=1.6e-06 Score=71.76 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=62.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CCC
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EAS 194 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~~ 194 (282)
++.+|||+||+.|+++.++++...+.++|+|+|+.+. ... ..+.++++|..+. ...+.... ...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhcccccc
Confidence 4579999999999999999998744689999999876 112 2467777776542 12221111 126
Q ss_pred ceeEEEEcCCc--------cc------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 195 SYDFAFVDAEK--------RM------YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 195 ~fDlV~id~~~--------~~------~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
++|+|++|... .. ....+..+..+ |+|||.+|+.
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~---L~~gG~~v~K 138 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALEL---LKPGGTFVIK 138 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHH---HCTTEEEEEE
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhh---hcCCCEEEEE
Confidence 99999999831 11 12234444566 9999988884
No 218
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.31 E-value=4e-06 Score=72.01 Aligned_cols=94 Identities=12% Similarity=0.123 Sum_probs=57.5
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEE-EEEcchhhH-HHHHHhCCCCCc
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK-IKHGLAADS-LKALILNGEASS 195 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~-~~~gd~~~~-l~~l~~~~~~~~ 195 (282)
.++++|||+|||+|.++..+++. + ..+|+++|+++.++.. .+.. ..++. +-..|+... ..... .+-..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~---~l~~---~~~v~~~~~~ni~~~~~~~~~--~d~~~ 143 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAE---KLRQ---DERVKVLERTNIRYVTPADIF--PDFAT 143 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHH---HHhc---CCCeeEeecCCcccCCHhHcC--CCcee
Confidence 35679999999999999999986 2 3689999999977754 1111 12232 222233211 11110 01246
Q ss_pred eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
+|++|+.... .+..+.++ |+| |.+++
T Consensus 144 ~DvsfiS~~~-----~l~~i~~~---l~~-~~~~~ 169 (228)
T TIGR00478 144 FDVSFISLIS-----ILPELDLL---LNP-NDLTL 169 (228)
T ss_pred eeEEEeehHh-----HHHHHHHH---hCc-CeEEE
Confidence 7777764432 46677777 999 66554
No 219
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.31 E-value=4.2e-06 Score=75.33 Aligned_cols=125 Identities=16% Similarity=0.190 Sum_probs=83.4
Q ss_pred CCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHC------CCCCEEEEEecCccHHHHHHHHHHHhCCCCc
Q 023411 99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL------PESGCLVACERDARSLEVAKKYYERAGVSHK 172 (282)
Q Consensus 99 ~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~------~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~ 172 (282)
+...+......++..++...++.+|+|-+||+|.+...+.+.+ ....+++|+|+++.....++-++...+....
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 3455677888899999988888899999999999998888753 1257899999999999999988876665443
Q ss_pred -EEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc------------------------cHHHHHHHHHhhcCCCCCcE
Q 023411 173 -VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM------------------------YQEYFELLLQLLLQIRVGGI 227 (282)
Q Consensus 173 -v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~------------------------~~~~l~~~~~~~~~LkpgG~ 227 (282)
..+.++|........ ....||+|+.+++... ...++..+... |++||.
T Consensus 106 ~~~i~~~d~l~~~~~~----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~---Lk~~G~ 178 (311)
T PF02384_consen 106 NINIIQGDSLENDKFI----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSL---LKPGGR 178 (311)
T ss_dssp GCEEEES-TTTSHSCT----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHT---EEEEEE
T ss_pred cccccccccccccccc----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhh---cccccc
Confidence 468888876542211 1368999998755111 11356667777 999997
Q ss_pred EEE
Q 023411 228 IVI 230 (282)
Q Consensus 228 lv~ 230 (282)
+++
T Consensus 179 ~~~ 181 (311)
T PF02384_consen 179 AAI 181 (311)
T ss_dssp EEE
T ss_pred eeE
Confidence 544
No 220
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.30 E-value=3.4e-06 Score=74.84 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=70.9
Q ss_pred CCCEEEEEcccccHHHHH----HHHHCCC---CCEEEEEecCccHHHHHHHHH------------------HH-------
Q 023411 119 GAQRCIEVGVYTGYSSLA----IALVLPE---SGCLVACERDARSLEVAKKYY------------------ER------- 166 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~----la~~~~~---~~~v~~iD~s~~~~~~a~~~~------------------~~------- 166 (282)
++-+|+-.||++|--.-. +.+..+. +.+|+|+|+|+.+++.|++.. ..
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 346999999999974333 3332221 357999999999999998651 11
Q ss_pred -----hCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 167 -----AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 167 -----~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
..+...|+|.+.|..+..... .+.||+|||-+.. +.....++.+.+. |+|||+|++..
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~-----~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~---L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAV-----PGPFDAIFCRNVMIYFDKTTQERILRRFVPL---LKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCcc-----CCCcceeeHhhHHhcCCHHHHHHHHHHHHHH---hCCCcEEEEeC
Confidence 012356778777776521111 3789999996552 3345567777777 99999998854
No 221
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.27 E-value=4.4e-06 Score=73.77 Aligned_cols=108 Identities=12% Similarity=0.105 Sum_probs=73.9
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC-----cEEEEEcchhh-HHHHHHhCC
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHGLAAD-SLKALILNG 191 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-----~v~~~~gd~~~-~l~~l~~~~ 191 (282)
.+.+.++++|||-|+..+..-.+- -+.++++||.+..++.|+++++...... .+.|+.+|... .+..+...
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~- 192 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF- 192 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC-
Confidence 467789999999999887766542 3689999999999999999887654332 37899998754 23333221
Q ss_pred CCCceeEEEEcCC----c---cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 192 EASSYDFAFVDAE----K---RMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 192 ~~~~fDlV~id~~----~---~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
.+.+||+|=+.-. . +...-.+..+.++ |+|||+++-.
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~---LkpGG~FIgT 236 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKC---LKPGGVFIGT 236 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhh---cCCCcEEEEe
Confidence 1234999955322 1 1223355666666 9999998863
No 222
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.27 E-value=8.7e-06 Score=68.84 Aligned_cols=115 Identities=20% Similarity=0.172 Sum_probs=65.6
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHH-------HhCC-CCcEEEEEcchhhH--
Q 023411 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE-------RAGV-SHKVKIKHGLAADS-- 183 (282)
Q Consensus 114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~-------~~g~-~~~v~~~~gd~~~~-- 183 (282)
.+...+.+..+|||||.|...+..+...+ -.+.+|||+.+...+.|+...+ ..|. ..++++.++|..+.
T Consensus 37 ~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~ 115 (205)
T PF08123_consen 37 ELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF 115 (205)
T ss_dssp HTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH
T ss_pred HhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh
Confidence 34455678999999999999888776553 3469999999998877765433 3343 35689999998763
Q ss_pred HHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411 184 LKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG 237 (282)
Q Consensus 184 l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g 237 (282)
...+ -..-|+||+++.. +.....+...... ||+|..+|.-.-+.+.
T Consensus 116 ~~~~-----~s~AdvVf~Nn~~F~~~l~~~L~~~~~~---lk~G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 116 VKDI-----WSDADVVFVNNTCFDPDLNLALAELLLE---LKPGARIISTKPFCPR 163 (205)
T ss_dssp HHHH-----GHC-SEEEE--TTT-HHHHHHHHHHHTT---S-TT-EEEESS-SS-T
T ss_pred Hhhh-----hcCCCEEEEeccccCHHHHHHHHHHHhc---CCCCCEEEECCCcCCC
Confidence 2222 2457999998762 2333333333344 8999888875444443
No 223
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.26 E-value=1.2e-05 Score=71.67 Aligned_cols=84 Identities=24% Similarity=0.171 Sum_probs=69.4
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
..++..++|.-+|.|+.|..+++.++ .++|+|+|.++++++.+++.++.. .+++++++++..+....+...+ ..++
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~-~~~v 93 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELL-VTKI 93 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcC-CCcc
Confidence 45677999999999999999999987 499999999999999999988753 4689999999987765543322 3679
Q ss_pred eEEEEcCC
Q 023411 197 DFAFVDAE 204 (282)
Q Consensus 197 DlV~id~~ 204 (282)
|.|+.|-+
T Consensus 94 DgIl~DLG 101 (305)
T TIGR00006 94 DGILVDLG 101 (305)
T ss_pred cEEEEecc
Confidence 99998754
No 224
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=98.24 E-value=3.7e-05 Score=63.22 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=96.5
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHC---CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (282)
Q Consensus 103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd 179 (282)
-+|...-.++.++-..+|..|+|+|+-.|++++++|..+ +...+|+++|++-..+.-+... ..+|.|++|+
T Consensus 53 k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egs 126 (237)
T COG3510 53 KSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGS 126 (237)
T ss_pred CCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCC
Confidence 345555566677777889999999999999999988754 2236899999986654332221 2469999999
Q ss_pred hhhH--HHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccC--Cc-CCChhhHHH
Q 023411 180 AADS--LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVAD--QM-VNDAKTISI 252 (282)
Q Consensus 180 ~~~~--l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~--~~-~~~~~~~~~ 252 (282)
..+. ..+.......-+-=+|+.|.. ..+....++.+.++ |.-|-++|+.|...++.... |- .+.....++
T Consensus 127 s~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pl---lsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AV 203 (237)
T COG3510 127 STDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPL---LSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAV 203 (237)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhH---hhcCceEEEecccccCCCCcccchhcCCChHHHH
Confidence 8662 222211111122234455554 34455556666677 99999999999887776532 22 245567889
Q ss_pred HHHHHH
Q 023411 253 RNFNKN 258 (282)
Q Consensus 253 ~~~~~~ 258 (282)
+.|++.
T Consensus 204 e~ylr~ 209 (237)
T COG3510 204 EAYLRE 209 (237)
T ss_pred HHHHHh
Confidence 998864
No 225
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.23 E-value=1.8e-05 Score=76.45 Aligned_cols=84 Identities=13% Similarity=0.036 Sum_probs=59.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCC-------CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPE-------SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~-------~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~ 191 (282)
...+|+|.|||+|.+...++..++. ...++++|+++..+..++.++...+. ..+.+..+|..........+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~- 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIES- 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccc-
Confidence 3458999999999999998887641 24689999999999999999887652 23566666654321111001
Q ss_pred CCCceeEEEEcCC
Q 023411 192 EASSYDFAFVDAE 204 (282)
Q Consensus 192 ~~~~fDlV~id~~ 204 (282)
..+.||+|+.+++
T Consensus 109 ~~~~fD~IIgNPP 121 (524)
T TIGR02987 109 YLDLFDIVITNPP 121 (524)
T ss_pred ccCcccEEEeCCC
Confidence 1368999998866
No 226
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.19 E-value=2.2e-05 Score=71.54 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=93.4
Q ss_pred ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCC---CC----------------------------C-----
Q 023411 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP---ES----------------------------G----- 145 (282)
Q Consensus 102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~---~~----------------------------~----- 145 (282)
.+.+..+..|..++.-.+...++|-=||+|.+.+..|...+ |+ +
T Consensus 174 pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 174 PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 46667777777777777888999999999999988776542 11 1
Q ss_pred --EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc-----------ccHHHH
Q 023411 146 --CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----------MYQEYF 212 (282)
Q Consensus 146 --~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~-----------~~~~~l 212 (282)
.++|+|+++.+++.|+.|...+|+.+.|+|.++|+.+..+. .+.+|+|+++++.. -|..+.
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg 327 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP------LEEYGVVISNPPYGERLGSEALVAKLYREFG 327 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC------CCcCCEEEeCCCcchhcCChhhHHHHHHHHH
Confidence 37899999999999999999999999999999999765331 16899999998732 245555
Q ss_pred HHHHHhhcCCCCCcEEEE
Q 023411 213 ELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 213 ~~~~~~~~~LkpgG~lv~ 230 (282)
+.+++. ++..+..|+
T Consensus 328 ~~lk~~---~~~ws~~v~ 342 (381)
T COG0116 328 RTLKRL---LAGWSRYVF 342 (381)
T ss_pred HHHHHH---hcCCceEEE
Confidence 666666 777777776
No 227
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.18 E-value=3.4e-05 Score=69.49 Aligned_cols=109 Identities=14% Similarity=0.014 Sum_probs=75.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCC---CCEEEEEecCccHHHHHHHHHHHhCCCC-cEEEEEcchhhHHHHHHhCCCCC
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
++..++|+|||+|.-+..+++++.+ ..+++++|+|.++++.+.+.+.....+. .+.-++||..+.+..+.......
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 4558999999999999888887742 3679999999999999999988333332 24448999877654442210023
Q ss_pred ceeEEEEcC-C-----ccccHHHHHHHHH-hhcCCCCCcEEEE
Q 023411 195 SYDFAFVDA-E-----KRMYQEYFELLLQ-LLLQIRVGGIIVI 230 (282)
Q Consensus 195 ~fDlV~id~-~-----~~~~~~~l~~~~~-~~~~LkpgG~lv~ 230 (282)
...+++.-+ . +.....++..+.+ . |+|||.+++
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~---l~~~d~lLi 195 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATA---LSPSDSFLI 195 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhh---CCCCCEEEE
Confidence 345655433 2 3334556777776 6 999998887
No 228
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.16 E-value=4.3e-06 Score=68.46 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=77.6
Q ss_pred CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~ 200 (282)
+.+.|+|+|+|..+...+++. -+|++||.+|...+.|++|+.-.|.. +++++.||+.+.- -+..|+|+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~--------fe~ADvvi 101 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYD--------FENADVVI 101 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEeccccccc--------ccccceeH
Confidence 589999999999998888763 58999999999999999999777765 4999999998652 25678888
Q ss_pred EcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 201 VDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 201 id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
|..- .+.....++.+.+. ||..+.++-..+.
T Consensus 102 cEmlDTaLi~E~qVpV~n~vleF---Lr~d~tiiPq~v~ 137 (252)
T COG4076 102 CEMLDTALIEEKQVPVINAVLEF---LRYDPTIIPQEVR 137 (252)
T ss_pred HHHhhHHhhcccccHHHHHHHHH---hhcCCccccHHHh
Confidence 7432 23344566777777 8988888766553
No 229
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.15 E-value=6.9e-06 Score=65.07 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=51.2
Q ss_pred EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
.++|||||.|.++.++++..+ .++++++|+++++.+.++++++.+++.+ +++++....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 489999999999999998875 5799999999999999999999888764 8888766543
No 230
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.15 E-value=9.9e-06 Score=71.08 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=72.0
Q ss_pred CCCEEEEEcccccH----HHHHHHHHCCC----CCEEEEEecCccHHHHHHHHHHH-----hCC----------------
Q 023411 119 GAQRCIEVGVYTGY----SSLAIALVLPE----SGCLVACERDARSLEVAKKYYER-----AGV---------------- 169 (282)
Q Consensus 119 ~~~~VLEIG~G~G~----~t~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~~-----~g~---------------- 169 (282)
.+-+|.-+||++|- .+..+.+.++. ..+|+|+|+|...++.|++-.=. .++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36799999999995 34455555542 46899999999999988753211 111
Q ss_pred -------CCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 170 -------SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 170 -------~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
...|+|...|..+..+ . .+.||+|||-++ .+.....++.+... |+|||+|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~-----~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~---L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-F-----LGKFDLIFCRNVLIYFDEETQERILRRFADS---LKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-c-----cCCCCEEEEcceEEeeCHHHHHHHHHHHHHH---hCCCCEEEEcc
Confidence 1246666666654332 2 578999999776 23344567777777 99999999953
No 231
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.14 E-value=3.6e-05 Score=64.43 Aligned_cols=109 Identities=19% Similarity=0.219 Sum_probs=81.1
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.++.+||+||-|-|.....+-++-| .+-+-||.+|+.+...+..- ..-.++|.+..|...+.++.++ ++.||
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~----d~~FD 171 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLP----DKHFD 171 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhcccc----ccCcc
Confidence 6788999999999998887777644 45677999999876554432 1234678999999999888876 57799
Q ss_pred EEEEcCCcccc---HHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411 198 FAFVDAEKRMY---QEYFELLLQLLLQIRVGGIIVIDNVLWHG 237 (282)
Q Consensus 198 lV~id~~~~~~---~~~l~~~~~~~~~LkpgG~lv~dd~~~~g 237 (282)
=|+-|.-.+.+ ..+.+.+.++ |||+|++-+-|.+-.+
T Consensus 172 GI~yDTy~e~yEdl~~~hqh~~rL---LkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 172 GIYYDTYSELYEDLRHFHQHVVRL---LKPEGVFSYFNGLGAD 211 (271)
T ss_pred eeEeechhhHHHHHHHHHHHHhhh---cCCCceEEEecCcccc
Confidence 99999774444 4455555555 9999999876665433
No 232
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.14 E-value=9.4e-06 Score=74.05 Aligned_cols=110 Identities=18% Similarity=0.285 Sum_probs=86.1
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
...++.+|||..+..|+=|.++|..+...|.|++-|.+...+...++++...|+.+ ..+...|..++..... .++
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~----~~~ 312 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEF----PGS 312 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccccccccc----Ccc
Confidence 45678899999999999999999999877999999999999999999999999886 5666677765432221 358
Q ss_pred eeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 196 YDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 196 fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
||.|++|++... ..+.+.....+ +++||+||....
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~l---v~~GGvLVYSTC 372 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDL---VKAGGVLVYSTC 372 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhh---ccCCcEEEEEee
Confidence 999999976211 22344455566 999999998755
No 233
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.11 E-value=2.2e-05 Score=62.40 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=59.2
Q ss_pred cCCCEEEEEcccccHHHHHHHHHC---CCCCEEEEEecCccHHHHHHHHHHHhC--CCCcEEEEEcchhhHHHHHHhCCC
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAG--VSHKVKIKHGLAADSLKALILNGE 192 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~v~~~~gd~~~~l~~l~~~~~ 192 (282)
.+...|+|+|||.|+.+..++..+ ..+.+|++||.++...+.+.+..+..+ ...++++..++..+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 96 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS------- 96 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-------
Confidence 677899999999999999999833 236899999999999999999888877 44556776665543211
Q ss_pred CCceeEEEEcCC
Q 023411 193 ASSYDFAFVDAE 204 (282)
Q Consensus 193 ~~~fDlV~id~~ 204 (282)
....++++--+.
T Consensus 97 ~~~~~~~vgLHa 108 (141)
T PF13679_consen 97 SDPPDILVGLHA 108 (141)
T ss_pred cCCCeEEEEeec
Confidence 345566664333
No 234
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.09 E-value=2.1e-05 Score=69.20 Aligned_cols=134 Identities=14% Similarity=0.102 Sum_probs=89.3
Q ss_pred CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (282)
Q Consensus 100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd 179 (282)
...+++.....+...+...++..|||||+|.|.+|..+++.. .+++++|+++.+.+..++.+. ...+++++++|
T Consensus 11 nFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D 84 (262)
T PF00398_consen 11 NFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGD 84 (262)
T ss_dssp SEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-
T ss_pred CeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecc
Confidence 345667777777777777788999999999999999999875 699999999999988888765 34579999999
Q ss_pred hhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCC
Q 023411 180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQ 242 (282)
Q Consensus 180 ~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~ 242 (282)
+.++...... ......|+.+-+..-....+..+......=+...++++..=.....++.|
T Consensus 85 ~l~~~~~~~~---~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~a~p 144 (262)
T PF00398_consen 85 FLKWDLYDLL---KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLLAKP 144 (262)
T ss_dssp TTTSCGGGHC---SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHHTST
T ss_pred hhccccHHhh---cCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhccCCC
Confidence 9875221000 13445666665554444555555553111013356666544444444444
No 235
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.08 E-value=3.4e-05 Score=65.23 Aligned_cols=106 Identities=15% Similarity=0.113 Sum_probs=73.5
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
.+.++.+||=+|+++|.....++...+++|.|++||.++...+..-...+ -..++--+.+|+....... . --+.
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~---~R~NIiPIl~DAr~P~~Y~--~-lv~~ 143 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAK---KRPNIIPILEDARHPEKYR--M-LVEM 143 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH---HSTTEEEEES-TTSGGGGT--T-TS--
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhc---cCCceeeeeccCCChHHhh--c-cccc
Confidence 34577899999999999999999998888999999999976544433333 2456888899986421110 0 1469
Q ss_pred eeEEEEcCCccccHH-HHHHHHHhhcCCCCCcEEEE
Q 023411 196 YDFAFVDAEKRMYQE-YFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 196 fDlV~id~~~~~~~~-~l~~~~~~~~~LkpgG~lv~ 230 (282)
+|+||.|-..++... +...+... ||+||.+++
T Consensus 144 VDvI~~DVaQp~Qa~I~~~Na~~f---Lk~gG~~~i 176 (229)
T PF01269_consen 144 VDVIFQDVAQPDQARIAALNARHF---LKPGGHLII 176 (229)
T ss_dssp EEEEEEE-SSTTHHHHHHHHHHHH---EEEEEEEEE
T ss_pred ccEEEecCCChHHHHHHHHHHHhh---ccCCcEEEE
Confidence 999999988665544 45666677 999998876
No 236
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.05 E-value=1.9e-06 Score=72.31 Aligned_cols=106 Identities=19% Similarity=0.240 Sum_probs=62.1
Q ss_pred CCCEEEEEcccccHHHHH----HHHHCC----CCCEEEEEecCccHHHHHHHH--------------HHHh-----C---
Q 023411 119 GAQRCIEVGVYTGYSSLA----IALVLP----ESGCLVACERDARSLEVAKKY--------------YERA-----G--- 168 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~----la~~~~----~~~~v~~iD~s~~~~~~a~~~--------------~~~~-----g--- 168 (282)
++-+|+-.||++|.-+-. +.+..+ ...+++|+|+|+.+++.|++- .++. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 456999999999974332 233111 135899999999999998753 1111 1
Q ss_pred -----CCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc-----ccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 169 -----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 169 -----~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~-----~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
+.++|+|.+.|..+..+. .+.||+|||-++.- .....++.+... |+|||+|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~------~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~---L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPP------FGRFDLIFCRNVLIYFDPETQQRVLRRLHRS---LKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGGS-HHHHHHHHHHHGGG---EEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcc------cCCccEEEecCEEEEeCHHHHHHHHHHHHHH---cCCCCEEEEecC
Confidence 124789999888872222 58999999988732 234456666666 999999999543
No 237
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.91 E-value=0.00016 Score=64.89 Aligned_cols=97 Identities=14% Similarity=0.100 Sum_probs=72.6
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
-...+|+|.|.|..+..+...+| ++-+++.+...+..++.++. .| |+.+-||.....| +-|+|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P---------~~daI 240 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP---------KGDAI 240 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccCC---------CcCeE
Confidence 47889999999999999998776 58888888888877777764 34 7788888875433 33588
Q ss_pred EEc----CC-ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411 200 FVD----AE-KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWH 236 (282)
Q Consensus 200 ~id----~~-~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~ 236 (282)
|+- ++ .++...+++.|++. |+|||.|++-+.+.+
T Consensus 241 ~mkWiLhdwtDedcvkiLknC~~s---L~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 241 WMKWILHDWTDEDCVKILKNCKKS---LPPGGKIIVVENVTP 279 (342)
T ss_pred EEEeecccCChHHHHHHHHHHHHh---CCCCCEEEEEeccCC
Confidence 763 33 45577789999888 999987766544444
No 238
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.90 E-value=0.00019 Score=60.55 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=78.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
.+.++.||||-.||.+.++.+..+ ...+++.|+++..++.|.++++.+++.++++...+|....+.. ++.+|.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~------~d~~d~ 88 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL------EDEIDV 88 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc------cCCcCE
Confidence 344599999999999999998765 6789999999999999999999999999999999999654432 468999
Q ss_pred EEEcCC-ccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 199 AFVDAE-KRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 199 V~id~~-~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
|++.+- ..-....+++-.+. |+.--.+|+
T Consensus 89 ivIAGMGG~lI~~ILee~~~~---l~~~~rlIL 118 (226)
T COG2384 89 IVIAGMGGTLIREILEEGKEK---LKGVERLIL 118 (226)
T ss_pred EEEeCCcHHHHHHHHHHhhhh---hcCcceEEE
Confidence 887654 33345556665555 543234444
No 239
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.89 E-value=5.6e-05 Score=69.76 Aligned_cols=106 Identities=17% Similarity=0.260 Sum_probs=81.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC-cEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.+-+|||.=+|+|.=++..+..++...+|++-|+|+++.+..++|++.+++.+ ++++.+.|+...+... ...||
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~-----~~~fD 123 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR-----QERFD 123 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS-----TT-EE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc-----cccCC
Confidence 34589999999999999999987644789999999999999999999999987 7999999997765322 58999
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
+|=+|+--. ...|++.+.+. ++.||+|.+...
T Consensus 124 ~IDlDPfGS-p~pfldsA~~~---v~~gGll~vTaT 155 (377)
T PF02005_consen 124 VIDLDPFGS-PAPFLDSALQA---VKDGGLLCVTAT 155 (377)
T ss_dssp EEEE--SS---HHHHHHHHHH---EEEEEEEEEEE-
T ss_pred EEEeCCCCC-ccHhHHHHHHH---hhcCCEEEEecc
Confidence 999997744 45688888888 999999999654
No 240
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.87 E-value=0.00019 Score=62.97 Aligned_cols=149 Identities=21% Similarity=0.336 Sum_probs=105.7
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh--CCC-CcEEEEEcchhhHHHHHHhCCC
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GVS-HKVKIKHGLAADSLKALILNGE 192 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~~-~~v~~~~gd~~~~l~~l~~~~~ 192 (282)
++..+++||-||-|.|......+++ +.-+.+.-+|++...++..++++... |.+ .+|.++.||...++....
T Consensus 118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~---- 192 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK---- 192 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc----
Confidence 4567899999999999998877776 32368999999999999999998863 332 579999999988887764
Q ss_pred CCceeEEEEcCCccc-------cHHHHHHHHHhhcCCCCCcEEEEe-CCCCCCcccCCcCCChhhHHHHHHHHHhhhCCC
Q 023411 193 ASSYDFAFVDAEKRM-------YQEYFELLLQLLLQIRVGGIIVID-NVLWHGKVADQMVNDAKTISIRNFNKNLMEDER 264 (282)
Q Consensus 193 ~~~fDlV~id~~~~~-------~~~~l~~~~~~~~~LkpgG~lv~d-d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (282)
.++||+|+.|..... ...+++.+.+- ||+||+++.. +.+|--. ..-.-+++|.+.+...-.
T Consensus 193 ~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~a---Lk~dgv~~~q~ec~wl~~--------~~i~e~r~~~~~~f~~t~ 261 (337)
T KOG1562|consen 193 ENPFDVIITDSSDPVGPACALFQKPYFGLVLDA---LKGDGVVCTQGECMWLHL--------DYIKEGRSFCYVIFDLTA 261 (337)
T ss_pred cCCceEEEEecCCccchHHHHHHHHHHHHHHHh---hCCCcEEEEecceehHHH--------HHHHHHHHhHHHhcCccc
Confidence 589999999866221 34477777777 9999998873 2222111 112235666666655555
Q ss_pred eEEEEeec----CCceEEEE
Q 023411 265 VSISMVPI----GDGMTICQ 280 (282)
Q Consensus 265 ~~~~~lp~----~~Gl~~~~ 280 (282)
+-.+..|+ .-|+.+|-
T Consensus 262 ya~ttvPTypsg~igf~l~s 281 (337)
T KOG1562|consen 262 YAITTVPTYPSGRIGFMLCS 281 (337)
T ss_pred eeeecCCCCccceEEEEEec
Confidence 66677775 44555554
No 241
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.84 E-value=4.6e-05 Score=63.86 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH
Q 023411 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL 187 (282)
Q Consensus 108 ~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l 187 (282)
..++..+....+...|.|+|||.+..+ +.++.+-.|...|+... .+ .++.+|.... |--
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~--------------n~--~Vtacdia~v-PL~ 119 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAP--------------NP--RVTACDIANV-PLE 119 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-HHH----HH--S---EEEEESS-S--------------ST--TEEES-TTS--S--
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHH----HhcccCceEEEeeccCC--------------CC--CEEEecCccC-cCC
Confidence 445566655556679999999998876 34443457999998653 12 3455777543 321
Q ss_pred HhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCe
Q 023411 188 ILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERV 265 (282)
Q Consensus 188 ~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (282)
+++.|+++..-. ..++..++.++.++ |||||.|.+..+.-.=. .+..|.+.+..- +|
T Consensus 120 -----~~svDv~VfcLSLMGTn~~~fi~EA~Rv---LK~~G~L~IAEV~SRf~------------~~~~F~~~~~~~-GF 178 (219)
T PF05148_consen 120 -----DESVDVAVFCLSLMGTNWPDFIREANRV---LKPGGILKIAEVKSRFE------------NVKQFIKALKKL-GF 178 (219)
T ss_dssp -----TT-EEEEEEES---SS-HHHHHHHHHHH---EEEEEEEEEEEEGGG-S-------------HHHHHHHHHCT-TE
T ss_pred -----CCceeEEEEEhhhhCCCcHHHHHHHHhe---eccCcEEEEEEecccCc------------CHHHHHHHHHHC-CC
Confidence 689999876655 56788999999999 99999999987742211 357787776544 55
Q ss_pred EEE
Q 023411 266 SIS 268 (282)
Q Consensus 266 ~~~ 268 (282)
...
T Consensus 179 ~~~ 181 (219)
T PF05148_consen 179 KLK 181 (219)
T ss_dssp EEE
T ss_pred eEE
Confidence 554
No 242
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.82 E-value=0.0003 Score=62.08 Aligned_cols=86 Identities=26% Similarity=0.258 Sum_probs=72.6
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
...+....+|..-|.|+.+..+++.+++.++++++|.++.+++.|++.+...+ ++++++++++.+....+...+ .++
T Consensus 20 ~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~-i~~ 96 (314)
T COG0275 20 APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELG-IGK 96 (314)
T ss_pred ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcC-CCc
Confidence 44566899999999999999999999878999999999999999999988654 689999999887666554433 579
Q ss_pred eeEEEEcCC
Q 023411 196 YDFAFVDAE 204 (282)
Q Consensus 196 fDlV~id~~ 204 (282)
+|-|+.|-+
T Consensus 97 vDGiL~DLG 105 (314)
T COG0275 97 VDGILLDLG 105 (314)
T ss_pred eeEEEEecc
Confidence 999998744
No 243
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.81 E-value=6e-05 Score=66.98 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=49.0
Q ss_pred CCEEEEEcccccHH-HHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh-CCCCcEEEEEcchhh-HHHHHHhCCCCCce
Q 023411 120 AQRCIEVGVYTGYS-SLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAAD-SLKALILNGEASSY 196 (282)
Q Consensus 120 ~~~VLEIG~G~G~~-t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~gd~~~-~l~~l~~~~~~~~f 196 (282)
..++||||||...+ .+.-++. . +-+++|.|+++..++.|+++++.+ ++.++|+++.....+ ++..+.. ..+.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~--~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-Y-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ--PNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT----S-E
T ss_pred ceEeecCCccHHHHHHHHhhhh-c-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc--cccee
Confidence 34799999986543 3333332 2 579999999999999999999999 999999998764322 2222221 14699
Q ss_pred eEEEEcCCcc
Q 023411 197 DFAFVDAEKR 206 (282)
Q Consensus 197 DlV~id~~~~ 206 (282)
|+.+|+++..
T Consensus 179 dftmCNPPFy 188 (299)
T PF05971_consen 179 DFTMCNPPFY 188 (299)
T ss_dssp EEEEE-----
T ss_pred eEEecCCccc
Confidence 9999987733
No 244
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.81 E-value=6.9e-05 Score=61.91 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=61.0
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
...++++|||+|+|+|..++..++.. ...|++.|+.|.....++-|.+.+|+. +.+...|... . +..
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~-------~~~ 142 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--S-------PPA 142 (218)
T ss_pred cccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--C-------Ccc
Confidence 34578899999999999999888764 368999999998888888888888864 7888777643 1 589
Q ss_pred eeEEEEcCC
Q 023411 196 YDFAFVDAE 204 (282)
Q Consensus 196 fDlV~id~~ 204 (282)
||+++....
T Consensus 143 ~Dl~LagDl 151 (218)
T COG3897 143 FDLLLAGDL 151 (218)
T ss_pred eeEEEeece
Confidence 999987544
No 245
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.79 E-value=5.7e-05 Score=62.68 Aligned_cols=107 Identities=15% Similarity=0.182 Sum_probs=75.6
Q ss_pred CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC------CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV------SHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~------~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
-.+.|||||.|.+...++..+| +.-+.|.||-....+..++++...+. -.++.+...++...++.+...|.-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL- 139 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL- 139 (249)
T ss_pred ceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc-
Confidence 4689999999999999999998 78899999999999999999887652 134788888888888877654411
Q ss_pred ceeEEEEcCCcc----------ccHHHHHHHHHhhcCCCCCcEEEE-eCC
Q 023411 195 SYDFAFVDAEKR----------MYQEYFELLLQLLLQIRVGGIIVI-DNV 233 (282)
Q Consensus 195 ~fDlV~id~~~~----------~~~~~l~~~~~~~~~LkpgG~lv~-dd~ 233 (282)
+-+ .|+-..++ ....++.+..=+ |++||.+.. .|+
T Consensus 140 skm-ff~fpdpHfk~~khk~rii~~~l~~eyay~---l~~gg~~ytitDv 185 (249)
T KOG3115|consen 140 SKM-FFLFPDPHFKARKHKWRIITSTLLSEYAYV---LREGGILYTITDV 185 (249)
T ss_pred ccc-eeecCChhHhhhhccceeechhHHHHHHhh---hhcCceEEEEeeH
Confidence 112 22222211 123355555555 999998754 444
No 246
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.72 E-value=0.00043 Score=60.46 Aligned_cols=165 Identities=13% Similarity=0.113 Sum_probs=83.4
Q ss_pred CCChhHHHHHHhccCChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHH----hhcCCCEEEEEcccc--cHHHHHHHHH
Q 023411 67 SVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLV----QILGAQRCIEVGVYT--GYSSLAIALV 140 (282)
Q Consensus 67 ~~~~~l~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~----~~~~~~~VLEIG~G~--G~~t~~la~~ 140 (282)
+...++++|+.+.....+.=+++-+.....--....+-.....++...+ ....-...||||||- -..+..+++.
T Consensus 12 P~~ARvYDy~LGGkdnf~vDR~~a~~~~~~~P~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~ 91 (267)
T PF04672_consen 12 PSPARVYDYLLGGKDNFAVDREAAERLLAAAPEIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQR 91 (267)
T ss_dssp --HHHHHHHHCT-SS--HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHH
T ss_pred CcHHHHHHHHhCCccCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHh
Confidence 3445788888876554444444433332221111222233333444433 334667999999993 4467888888
Q ss_pred CCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH---hC--CC-CCceeEEEEcC-----CccccH
Q 023411 141 LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI---LN--GE-ASSYDFAFVDA-----EKRMYQ 209 (282)
Q Consensus 141 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~---~~--~~-~~~fDlV~id~-----~~~~~~ 209 (282)
..++++|+-+|.+|-.+..++..+....- .+..++++|..+.-.-+. .. -+ +.++=++++.. +..+..
T Consensus 92 ~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~ 170 (267)
T PF04672_consen 92 VAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPA 170 (267)
T ss_dssp H-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHH
T ss_pred hCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHH
Confidence 77789999999999999999998875432 348999999987432221 00 01 12333333321 112344
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411 210 EYFELLLQLLLQIRVGGIIVIDNVLW 235 (282)
Q Consensus 210 ~~l~~~~~~~~~LkpgG~lv~dd~~~ 235 (282)
..+..+... |.||++|++.....
T Consensus 171 ~iv~~l~d~---lapGS~L~ish~t~ 193 (267)
T PF04672_consen 171 GIVARLRDA---LAPGSYLAISHATD 193 (267)
T ss_dssp HHHHHHHCC---S-TT-EEEEEEEB-
T ss_pred HHHHHHHHh---CCCCceEEEEecCC
Confidence 455555554 99999999987753
No 247
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.72 E-value=0.00013 Score=65.23 Aligned_cols=87 Identities=22% Similarity=0.167 Sum_probs=63.0
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
..++..++|.-.|.|+.+..+++.+++ ++++|+|.++++++.+++.+... .+++.++++++.+....+.......++
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~~ 94 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINKV 94 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-E
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCcc
Confidence 567779999999999999999999984 99999999999999998877643 678999999998776655544125799
Q ss_pred eEEEEcCCcc
Q 023411 197 DFAFVDAEKR 206 (282)
Q Consensus 197 DlV~id~~~~ 206 (282)
|-|++|-+..
T Consensus 95 dgiL~DLGvS 104 (310)
T PF01795_consen 95 DGILFDLGVS 104 (310)
T ss_dssp EEEEEE-S--
T ss_pred CEEEEccccC
Confidence 9999986633
No 248
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.69 E-value=0.00047 Score=53.36 Aligned_cols=106 Identities=19% Similarity=0.226 Sum_probs=67.7
Q ss_pred EEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH-HHHHHhCCCC-CceeEEE
Q 023411 123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNGEA-SSYDFAF 200 (282)
Q Consensus 123 VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~-l~~l~~~~~~-~~fDlV~ 200 (282)
++|+|||+|..+ .+....+....++++|+++.++..++..... .....+.+..++.... .+.. . ..||++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFE-----DSASFDLVI 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCC-----CCCceeEEe
Confidence 999999999987 4444333224899999999988885544432 1111167777776542 2211 2 3799993
Q ss_pred EcCCccc--cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 201 VDAEKRM--YQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 201 id~~~~~--~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
....... ....+..+.+. ++|+|.+++........
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~---l~~~g~~~~~~~~~~~~ 161 (257)
T COG0500 125 SLLVLHLLPPAKALRELLRV---LKPGGRLVLSDLLRDGL 161 (257)
T ss_pred eeeehhcCCHHHHHHHHHHh---cCCCcEEEEEeccCCCC
Confidence 3333221 35667777777 99999998877765443
No 249
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.68 E-value=4.4e-05 Score=71.47 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=56.1
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
-+.+||||||+|.++.+|.+. +-...++-..... +...+..-+.|+..-+.+. +..-+|.. ++.||+|
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~-~~qvqfaleRGvpa~~~~~---~s~rLPfp-----~~~fDmv 185 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLER---NVTTMSFAPNDEH-EAQVQFALERGVPAMIGVL---GSQRLPFP-----SNAFDMV 185 (506)
T ss_pred eEEEEeccceeehhHHHHhhC---CceEEEcccccCC-chhhhhhhhcCcchhhhhh---ccccccCC-----ccchhhh
Confidence 357899999999999999875 2333333332221 1111222223443322111 12223332 6899999
Q ss_pred EEcCC----ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 200 FVDAE----KRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 200 ~id~~----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
-|... ..+-.-++-++-++ |||||+++....-
T Consensus 186 Hcsrc~i~W~~~~g~~l~evdRv---LRpGGyfv~S~pp 221 (506)
T PF03141_consen 186 HCSRCLIPWHPNDGFLLFEVDRV---LRPGGYFVLSGPP 221 (506)
T ss_pred hcccccccchhcccceeehhhhh---hccCceEEecCCc
Confidence 87533 22222356667777 9999998886553
No 250
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.67 E-value=0.00043 Score=62.45 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=69.1
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.++.++|||||++|++|-.+++. +++|++||..+-. ..+. -..+|+.+.+|.....+. .+.+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~---~~~~V~h~~~d~fr~~p~------~~~vD 272 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLM---DTGQVEHLRADGFKFRPP------RKNVD 272 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----Hhhh---CCCCEEEEeccCcccCCC------CCCCC
Confidence 57789999999999999999985 5799999965421 1122 245799999998766442 36899
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeCCCCCCc
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDNVLWHGK 238 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd~~~~g~ 238 (282)
++++|.... .....+.+.+. |..| ..-.+=|+..++.
T Consensus 273 wvVcDmve~-P~rva~lm~~W---l~~g~cr~aIfnLKlpmk 310 (357)
T PRK11760 273 WLVCDMVEK-PARVAELMAQW---LVNGWCREAIFNLKLPMK 310 (357)
T ss_pred EEEEecccC-HHHHHHHHHHH---HhcCcccEEEEEEEcCCC
Confidence 999998733 23345555555 7666 2334445666664
No 251
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.65 E-value=0.0045 Score=53.19 Aligned_cols=102 Identities=20% Similarity=0.222 Sum_probs=61.2
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
..+++||=+|=.--.+ +.++.... ..+|+.+|+++..++..++..++.|+. ++.++.|..+-+|.-. .++||
T Consensus 43 L~gk~il~lGDDDLtS-lA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~----~~~fD 114 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTS-LALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL----RGKFD 114 (243)
T ss_dssp STT-EEEEES-TT-HH-HHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT----SS-BS
T ss_pred ccCCEEEEEcCCcHHH-HHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH----hcCCC
Confidence 3678999999665443 44443222 479999999999999999999999986 9999999988766432 58999
Q ss_pred EEEEcCCc--cccHHHHHHHHHhhcCCCCCc-EEEE
Q 023411 198 FAFVDAEK--RMYQEYFELLLQLLLQIRVGG-IIVI 230 (282)
Q Consensus 198 lV~id~~~--~~~~~~l~~~~~~~~~LkpgG-~lv~ 230 (282)
++|.|++. +...-++...... ||..| ..++
T Consensus 115 ~f~TDPPyT~~G~~LFlsRgi~~---Lk~~g~~gy~ 147 (243)
T PF01861_consen 115 VFFTDPPYTPEGLKLFLSRGIEA---LKGEGCAGYF 147 (243)
T ss_dssp EEEE---SSHHHHHHHHHHHHHT---B-STT-EEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHH---hCCCCceEEE
Confidence 99999983 4455577777776 77666 4333
No 252
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00056 Score=58.40 Aligned_cols=98 Identities=14% Similarity=0.107 Sum_probs=70.3
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhCCCCCce
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASSY 196 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~~~~~~f 196 (282)
.+++.|||||+.||++|..+++.- ..+|+|+|..-..+.+- ++ .+.|+..+.. |+....+... .+..
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~k---LR---~d~rV~~~E~tN~r~l~~~~~----~~~~ 145 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWK---LR---NDPRVIVLERTNVRYLTPEDF----TEKP 145 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHh---Hh---cCCcEEEEecCChhhCCHHHc----ccCC
Confidence 477899999999999999999863 26899999987655431 11 3445665543 4544333221 3578
Q ss_pred eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
|++++|...-.....+..+..+ +++++.++.
T Consensus 146 d~~v~DvSFISL~~iLp~l~~l---~~~~~~~v~ 176 (245)
T COG1189 146 DLIVIDVSFISLKLILPALLLL---LKDGGDLVL 176 (245)
T ss_pred CeEEEEeehhhHHHHHHHHHHh---cCCCceEEE
Confidence 9999998877677778888888 999987665
No 253
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00085 Score=55.83 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=77.3
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCC
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEA 193 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~ 193 (282)
.+.++.+||=+|+.+|.....++.-.+ .|.+++||.++......-...+ -.+++--+.+|+..- ...+ -
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~---~R~Ni~PIL~DA~~P~~Y~~~-----V 143 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAE---KRPNIIPILEDARKPEKYRHL-----V 143 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHH---hCCCceeeecccCCcHHhhhh-----c
Confidence 356788999999999999999999887 8999999999987654433333 345688888888542 2222 4
Q ss_pred CceeEEEEcCCccccHH-HHHHHHHhhcCCCCCcEEEE
Q 023411 194 SSYDFAFVDAEKRMYQE-YFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 194 ~~fDlV~id~~~~~~~~-~l~~~~~~~~~LkpgG~lv~ 230 (282)
+..|+||.|-..++... +...+... |++||.+++
T Consensus 144 e~VDviy~DVAQp~Qa~I~~~Na~~F---Lk~~G~~~i 178 (231)
T COG1889 144 EKVDVIYQDVAQPNQAEILADNAEFF---LKKGGYVVI 178 (231)
T ss_pred ccccEEEEecCCchHHHHHHHHHHHh---cccCCeEEE
Confidence 78999999988666555 45566677 999996655
No 254
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.57 E-value=0.00076 Score=59.72 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=41.1
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~ 167 (282)
..+.+|||+|||.|..+..+...++.-.+++++|.|+.+++.++..++..
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 36779999999999877777777764468999999999999998877643
No 255
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.00041 Score=55.68 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=70.4
Q ss_pred cCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC--CcEEEEEcchhhHHHHHHhCCCCC
Q 023411 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 118 ~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~--~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
..+++|+|+|.| +|..++.+|...+ ...|...|-+++.++..++....+-.. .++....-+.. ....+-+..
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~----~aqsq~eq~ 102 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIW----GAQSQQEQH 102 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHh----hhHHHHhhC
Confidence 356789999988 5667788887766 678999999999988887766654221 11222211111 101111146
Q ss_pred ceeEEEEcC-C--ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 195 SYDFAFVDA-E--KRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 195 ~fDlV~id~-~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
.||+|++.. . .++..+..+.++.+ |+|.|.-++-..
T Consensus 103 tFDiIlaADClFfdE~h~sLvdtIk~l---L~p~g~Al~fsP 141 (201)
T KOG3201|consen 103 TFDIILAADCLFFDEHHESLVDTIKSL---LRPSGRALLFSP 141 (201)
T ss_pred cccEEEeccchhHHHHHHHHHHHHHHH---hCcccceeEecC
Confidence 999999743 3 55667788888888 999998555433
No 256
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.45 E-value=0.00017 Score=61.01 Aligned_cols=98 Identities=8% Similarity=0.046 Sum_probs=71.7
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
-..++||||+.|+....+.... -.+++-+|.|-.|++.++..-. .++ .+....+|- +.++.- ++++|+|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-p~i--~~~~~v~DE-E~Ldf~-----ens~DLi 141 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-PSI--ETSYFVGDE-EFLDFK-----ENSVDLI 141 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-Cce--EEEEEecch-hccccc-----ccchhhh
Confidence 3489999999999988877543 2689999999999887765322 222 245556664 344432 6899999
Q ss_pred EEc---CCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 200 FVD---AEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 200 ~id---~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+.. +|..+.+..+..|... |||+|.++..
T Consensus 142 isSlslHW~NdLPg~m~~ck~~---lKPDg~Fias 173 (325)
T KOG2940|consen 142 ISSLSLHWTNDLPGSMIQCKLA---LKPDGLFIAS 173 (325)
T ss_pred hhhhhhhhhccCchHHHHHHHh---cCCCccchhH
Confidence 864 5667778888888888 9999998774
No 257
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.45 E-value=0.00045 Score=59.58 Aligned_cols=97 Identities=10% Similarity=0.052 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH
Q 023411 107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 186 (282)
Q Consensus 107 ~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~ 186 (282)
...++..+-.......|.|+|||-+-++. .. .-.|+++|+.+. . -+++.+|..+. |-
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~~--~~kV~SfDL~a~--------------~--~~V~~cDm~~v-Pl 224 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS----SE--RHKVHSFDLVAV--------------N--ERVIACDMRNV-PL 224 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh----cc--ccceeeeeeecC--------------C--CceeeccccCC-cC
Confidence 34456666666667789999999987654 22 357999998642 2 35566777653 21
Q ss_pred HHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 187 LILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 187 l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
++++.|+++..-. ..++.+++.++.++ |++||.+-+..+-
T Consensus 225 -----~d~svDvaV~CLSLMgtn~~df~kEa~Ri---Lk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 225 -----EDESVDVAVFCLSLMGTNLADFIKEANRI---LKPGGLLYIAEVK 266 (325)
T ss_pred -----ccCcccEEEeeHhhhcccHHHHHHHHHHH---hccCceEEEEehh
Confidence 1689999776544 45688899999999 9999999997774
No 258
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00038 Score=65.04 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=88.3
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC-CCCcee
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYD 197 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~-~~~~fD 197 (282)
.+..+|-+|-|.|....++...+| ..++++|+++|++++.|++++....-. +..++..|..+.+....+.. ++..||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCc
Confidence 345788889999999998888887 689999999999999999998764433 56777788888887776643 467999
Q ss_pred EEEEcCCccc------------cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCccc
Q 023411 198 FAFVDAEKRM------------YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVA 240 (282)
Q Consensus 198 lV~id~~~~~------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~ 240 (282)
+++.|-+-.+ ...++..++.. |.|.|+++++-+-.+..+.
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~---l~p~g~f~inlv~r~~~~~ 424 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMI---LPPRGMFIINLVTRNSSFK 424 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhc---cCccceEEEEEecCCcchh
Confidence 9998744111 12344555555 9999999998776666543
No 259
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.38 E-value=0.00021 Score=65.43 Aligned_cols=107 Identities=14% Similarity=0.198 Sum_probs=81.4
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
..++..++++|||.|....+++..- .+.+++++.++..+..+.......++.++..++.++..+... ++..|
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f------edn~f 179 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF------EDNTF 179 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC------Ccccc
Confidence 4456689999999999999999753 588999999999998888888888888877777666654322 26899
Q ss_pred eEEEE-cCC--ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 197 DFAFV-DAE--KRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 197 DlV~i-d~~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
|.+.. +.. .......++++.+. ++|||+.+.....
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv---~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRV---LKPGGLFIVKEWI 217 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcc---cCCCceEEeHHHH
Confidence 99854 444 33344556666666 9999999986654
No 260
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.38 E-value=0.00022 Score=61.21 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=54.5
Q ss_pred HHHHHHhhcCC--CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC--C------CCcEEEEEcc
Q 023411 110 LLAMLVQILGA--QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V------SHKVKIKHGL 179 (282)
Q Consensus 110 ll~~l~~~~~~--~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~------~~~v~~~~gd 179 (282)
.+...+...++ .+|||.-+|.|.-++.++.. +++|+++|.||-.....+.-++.+. . ..+++++++|
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 34455544444 38999999999999999864 5799999999988777665544331 1 1379999999
Q ss_pred hhhHHHHHHhCCCCCceeEEEEcCC
Q 023411 180 AADSLKALILNGEASSYDFAFVDAE 204 (282)
Q Consensus 180 ~~~~l~~l~~~~~~~~fDlV~id~~ 204 (282)
+.+.+... ..+||+|++|+=
T Consensus 141 ~~~~L~~~-----~~s~DVVY~DPM 160 (234)
T PF04445_consen 141 ALEYLRQP-----DNSFDVVYFDPM 160 (234)
T ss_dssp CCCHCCCH-----SS--SEEEE--S
T ss_pred HHHHHhhc-----CCCCCEEEECCC
Confidence 99887622 689999999854
No 261
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.34 E-value=0.003 Score=60.53 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=98.5
Q ss_pred CCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCC---CCEEEEEecCccHHHHHHHHHHHhCCCCcEE
Q 023411 98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVK 174 (282)
Q Consensus 98 ~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~ 174 (282)
++.........+++..++...+..+|.|-.||+|+.-......+.+ ...++|.|+++.....++-++--+|....+.
T Consensus 165 ~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489)
T COG0286 165 AGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence 4566778888899999888877779999999999998888777743 2679999999999999999999888874456
Q ss_pred EEEcchhhHHHHHHhCCCCCceeEEEEcCCc----------------------------cccHHHHHHHHHhhcCCCCCc
Q 023411 175 IKHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLLLQIRVGG 226 (282)
Q Consensus 175 ~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~----------------------------~~~~~~l~~~~~~~~~LkpgG 226 (282)
..++|........ .+.+...||+|+...+. .....++..+... |+|||
T Consensus 245 i~~~dtl~~~~~~-~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~---l~~~g 320 (489)
T COG0286 245 IRHGDTLSNPKHD-DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYK---LKPGG 320 (489)
T ss_pred ccccccccCCccc-ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHh---cCCCc
Confidence 7777765432211 01124789998764331 0113456666666 99865
Q ss_pred ---EEEEeCCCCCCc
Q 023411 227 ---IIVIDNVLWHGK 238 (282)
Q Consensus 227 ---~lv~dd~~~~g~ 238 (282)
+++.+++++.|.
T Consensus 321 ~aaivl~~gvlfr~~ 335 (489)
T COG0286 321 RAAIVLPDGVLFRGG 335 (489)
T ss_pred eEEEEecCCcCcCCC
Confidence 666677777765
No 262
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.0031 Score=57.20 Aligned_cols=103 Identities=16% Similarity=0.214 Sum_probs=83.0
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
+.+|+|-=+|+|.=++.++...+. .+++.=|+||++.+.+++|++.+...+ ...+..|+...+... ...||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~-----~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHEL-----HRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhc-----CCCccEE
Confidence 779999999999999999988762 389999999999999999999884444 566668887666543 4789998
Q ss_pred EEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 200 FVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 200 ~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
=+|+--. ...|++...+. ++.||+|.+...
T Consensus 126 DiDPFGS-PaPFlDaA~~s---~~~~G~l~vTAT 155 (380)
T COG1867 126 DIDPFGS-PAPFLDAALRS---VRRGGLLCVTAT 155 (380)
T ss_pred ecCCCCC-CchHHHHHHHH---hhcCCEEEEEec
Confidence 8886633 45678888888 899999998644
No 263
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.0026 Score=52.35 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=69.0
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhH--HHHHHhCCCCC
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADS--LKALILNGEAS 194 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~--l~~l~~~~~~~ 194 (282)
.+..+|||+||..|.|+...-+...+.|-|.|||+-.-. ... -++++++ |..+. ...+...-..-
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~~-Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PPE-GATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CCC-CcccccccccCCHHHHHHHHHhCCCC
Confidence 468899999999999999988888668999999985421 122 2666666 55442 22222222257
Q ss_pred ceeEEEEcCCcc-------ccHHHHHHHHHh----hcCCCCCcEEEEeCCCCCCc
Q 023411 195 SYDFAFVDAEKR-------MYQEYFELLLQL----LLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 195 ~fDlV~id~~~~-------~~~~~l~~~~~~----~~~LkpgG~lv~dd~~~~g~ 238 (282)
..|+|+.|-.+. +.....+.|... ...++|+|.+++. +|.|.
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g~ 188 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDGS 188 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecCC
Confidence 899999985421 222233444221 1238899999994 67775
No 264
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.29 E-value=0.0022 Score=63.75 Aligned_cols=103 Identities=22% Similarity=0.238 Sum_probs=70.0
Q ss_pred CEEEEEcccccHHHHHHHHHC-------CC----CCEEEEEecCccHH--------------HHHHHHHHH-----hCC-
Q 023411 121 QRCIEVGVYTGYSSLAIALVL-------PE----SGCLVACERDARSL--------------EVAKKYYER-----AGV- 169 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~-------~~----~~~v~~iD~s~~~~--------------~~a~~~~~~-----~g~- 169 (282)
-+|+|+|-|+|...+...+.+ ++ .-+++++|..|-.. +.+++..+. .|.
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 489999999999888777555 21 24799999865222 222222211 121
Q ss_pred -----CC--cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc-----cc-cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 170 -----SH--KVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RM-YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 170 -----~~--~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~-----~~-~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
.+ ++++..||+.+.++.+ ...+|.+|.|+-. +. ..+++..+.++ ++|||.++--
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~-----~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~---~~~~~~~~t~ 205 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQL-----DARADAWFLDGFAPAKNPDMWSPNLFNALARL---ARPGATLATF 205 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhc-----cccccEEEeCCCCCccChhhccHHHHHHHHHH---hCCCCEEEEe
Confidence 11 3567889999988876 4679999999752 22 35578888888 9999998843
No 265
>PHA01634 hypothetical protein
Probab=97.25 E-value=0.00087 Score=51.62 Aligned_cols=74 Identities=20% Similarity=0.200 Sum_probs=55.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
.+++|+|||++.|.++++++..- ..+|+++|.++...+..+++.+.+.+-++.... + ++ +. +=+.||+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~-~---eW-~~-----~Y~~~Di 95 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-G---EW-NG-----EYEDVDI 95 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeec-c---cc-cc-----cCCCcce
Confidence 57799999999999999999753 258999999999999999988866443322221 1 11 11 1478999
Q ss_pred EEEcCC
Q 023411 199 AFVDAE 204 (282)
Q Consensus 199 V~id~~ 204 (282)
..+|..
T Consensus 96 ~~iDCe 101 (156)
T PHA01634 96 FVMDCE 101 (156)
T ss_pred EEEEcc
Confidence 999976
No 266
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.22 E-value=0.0015 Score=56.40 Aligned_cols=88 Identities=10% Similarity=0.084 Sum_probs=59.6
Q ss_pred HHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 023411 107 QAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185 (282)
Q Consensus 107 ~~~ll~~l~~~-~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~ 185 (282)
...++..+... ..+.+|+|||||.--+++.+.... ++..++|+|++..+++.....+...+.. .++...|.....+
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~ 168 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP 168 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC
Confidence 34444444443 458899999999988888766543 3689999999999999999999998876 4555556654333
Q ss_pred HHHhCCCCCceeEEEEcCC
Q 023411 186 ALILNGEASSYDFAFVDAE 204 (282)
Q Consensus 186 ~l~~~~~~~~fDlV~id~~ 204 (282)
....|+.++--.
T Consensus 169 -------~~~~DlaLllK~ 180 (251)
T PF07091_consen 169 -------KEPADLALLLKT 180 (251)
T ss_dssp -------TSEESEEEEET-
T ss_pred -------CCCcchhhHHHH
Confidence 578999987644
No 267
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.12 E-value=0.004 Score=53.26 Aligned_cols=148 Identities=15% Similarity=0.147 Sum_probs=91.3
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
.+.++.+||=+|+++|.....+...+.+++-|++||.++..- ++.+.-+.-..+|--+..|+......-. .-.-
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsG---RdL~nmAkkRtNiiPIiEDArhP~KYRm---lVgm 226 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSG---RDLINMAKKRTNIIPIIEDARHPAKYRM---LVGM 226 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccch---HHHHHHhhccCCceeeeccCCCchheee---eeee
Confidence 456888999999999999999999888889999999988643 3333333334457777778754211100 0367
Q ss_pred eeEEEEcCCccccHHHH-HHHHHhhcCCCCCcEEEEe--CCCCCCcccCCcCCChhhHHHHHHH--HHhhhCCCeEEEEe
Q 023411 196 YDFAFVDAEKRMYQEYF-ELLLQLLLQIRVGGIIVID--NVLWHGKVADQMVNDAKTISIRNFN--KNLMEDERVSISMV 270 (282)
Q Consensus 196 fDlV~id~~~~~~~~~l-~~~~~~~~~LkpgG~lv~d--d~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l 270 (282)
.|+||.|..+++....+ -...-. ||+||-+++. ....++.+ ..++....+-. +.=.-.|.-++++-
T Consensus 227 VDvIFaDvaqpdq~RivaLNA~~F---Lk~gGhfvisikancidstv------~ae~vFa~Ev~klqee~lkP~EqvtLE 297 (317)
T KOG1596|consen 227 VDVIFADVAQPDQARIVALNAQYF---LKNGGHFVISIKANCIDSTV------FAEAVFAAEVKKLQEEQLKPKEQVTLE 297 (317)
T ss_pred EEEEeccCCCchhhhhhhhhhhhh---hccCCeEEEEEecccccccc------cHHHHHHHHHHHHHHhccCchheeccc
Confidence 89999998866654433 334455 9999988774 22222322 12222222221 11122466777888
Q ss_pred ecCCceEE
Q 023411 271 PIGDGMTI 278 (282)
Q Consensus 271 p~~~Gl~~ 278 (282)
|+-.+-.+
T Consensus 298 P~erdha~ 305 (317)
T KOG1596|consen 298 PFERDHAC 305 (317)
T ss_pred cccCCceE
Confidence 87554443
No 268
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.12 E-value=0.0039 Score=54.78 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=71.6
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC------------------------------
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV------------------------------ 169 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~------------------------------ 169 (282)
..+||-=|||.|..+..+|.. +..+.|.|.|--|+-..+-.++....
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 468999999999999999985 57999999998886443332221100
Q ss_pred ---------CCcEEEEEcchhhHHHHHHhCCCCCceeEEE----EcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC-C
Q 023411 170 ---------SHKVKIKHGLAADSLKALILNGEASSYDFAF----VDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL-W 235 (282)
Q Consensus 170 ---------~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~----id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~-~ 235 (282)
..++....||+.+....- ...++||.|+ +|- .++..+|++.+.++ |||||+.|=-..+ |
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~---~~~~~~d~VvT~FFIDT-A~Ni~~Yi~tI~~l---LkpgG~WIN~GPLly 206 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPD---ENKGSFDVVVTCFFIDT-AENIIEYIETIEHL---LKPGGYWINFGPLLY 206 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCc---ccCCcccEEEEEEEeec-hHHHHHHHHHHHHH---hccCCEEEecCCccc
Confidence 113445555555432210 0136899874 444 45677899999999 9999977654444 4
Q ss_pred CCc
Q 023411 236 HGK 238 (282)
Q Consensus 236 ~g~ 238 (282)
+-.
T Consensus 207 h~~ 209 (270)
T PF07942_consen 207 HFE 209 (270)
T ss_pred cCC
Confidence 443
No 269
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.07 E-value=0.0011 Score=54.89 Aligned_cols=115 Identities=9% Similarity=0.048 Sum_probs=67.5
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHH------HHHHHHHHHhCCCCcEEEEEcchhhHHHH
Q 023411 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSL------EVAKKYYERAGVSHKVKIKHGLAADSLKA 186 (282)
Q Consensus 113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~------~~a~~~~~~~g~~~~v~~~~gd~~~~l~~ 186 (282)
.++..+++.+|+|+=.|.|++|..++..+.+.|.|+++-..+... ...+....+.... +++.+-.+.....
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~-- 118 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALG-- 118 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccC--
Confidence 345567888999999999999999999998889999987654311 1111111111222 2333322222111
Q ss_pred HHhCCCCCceeEEEEcCC----------ccccHHHHHHHHHhhcCCCCCcEEEEeC-CCCCCc
Q 023411 187 LILNGEASSYDFAFVDAE----------KRMYQEYFELLLQLLLQIRVGGIIVIDN-VLWHGK 238 (282)
Q Consensus 187 l~~~~~~~~fDlV~id~~----------~~~~~~~l~~~~~~~~~LkpgG~lv~dd-~~~~g~ 238 (282)
. .+..|+++.... ..........+.+. |||||++++.| ...+|.
T Consensus 119 ~-----pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~---LKPGGv~~V~dH~a~pG~ 173 (238)
T COG4798 119 A-----PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKA---LKPGGVYLVEDHRADPGS 173 (238)
T ss_pred C-----CCcccccccchhhhhhhccccCcchHHHHHHHHHHh---cCCCcEEEEEeccccCCC
Confidence 1 356666654211 12234456667777 99999886644 445554
No 270
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.0012 Score=61.87 Aligned_cols=117 Identities=22% Similarity=0.217 Sum_probs=93.8
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (282)
Q Consensus 111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~ 190 (282)
.....+..++-+|||.=+++|.-++..+..++.-..+++-|.++..++..++|++.++.++.++..+.|+....-...
T Consensus 101 ~~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~-- 178 (525)
T KOG1253|consen 101 AALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHP-- 178 (525)
T ss_pred cchhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcc--
Confidence 344555667889999999999999999999984468999999999999999999999999989999999865432221
Q ss_pred CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
.....||+|=+|.--. ...|++.+.+. ++.||+|.+...
T Consensus 179 ~~~~~FDvIDLDPyGs-~s~FLDsAvqa---v~~gGLL~vT~T 217 (525)
T KOG1253|consen 179 MVAKFFDVIDLDPYGS-PSPFLDSAVQA---VRDGGLLCVTCT 217 (525)
T ss_pred ccccccceEecCCCCC-ccHHHHHHHHH---hhcCCEEEEEec
Confidence 0147899998887633 45678888888 999999998643
No 271
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.87 E-value=8.4e-05 Score=61.91 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=70.4
Q ss_pred CCCCccCHHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEE
Q 023411 98 GSQMQVSPDQAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174 (282)
Q Consensus 98 ~~~~~~~~~~~~ll~~l~~---~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~ 174 (282)
++.+..++++-+-+..+-. ...+.++||+|+|.|.++..++..+. +|++.|.|..|....++ .+. +
T Consensus 88 GsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~k----k~y----n 156 (288)
T KOG3987|consen 88 GSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKK----KNY----N 156 (288)
T ss_pred CceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhh----cCC----c
Confidence 3344556655333322221 13457999999999999999987764 69999999887655433 222 2
Q ss_pred EEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCC-CcEEEEeCCC
Q 023411 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRV-GGIIVIDNVL 234 (282)
Q Consensus 175 ~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~ 234 (282)
++. ..|+... +-+||+|.|-......-+.++.+..++..|+| +|.+|+.=++
T Consensus 157 Vl~--~~ew~~t------~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL 209 (288)
T KOG3987|consen 157 VLT--EIEWLQT------DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL 209 (288)
T ss_pred eee--ehhhhhc------CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence 221 2233321 45799998765533332333334333333999 7888776554
No 272
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.85 E-value=0.0016 Score=56.90 Aligned_cols=115 Identities=12% Similarity=0.094 Sum_probs=62.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC---------------------------
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH--------------------------- 171 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~--------------------------- 171 (282)
++.++||||||.-..- +..+.+.--+++..|..+...+..++.++..+--+
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4668999999974332 22222212479999999998887777665432111
Q ss_pred cE-EEEEcchhhHHHHHHhCCCCCceeEEEEcCC----ccccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411 172 KV-KIKHGLAADSLKALILNGEASSYDFAFVDAE----KRMYQEYFELLLQLLLQIRVGGIIVIDNVLW 235 (282)
Q Consensus 172 ~v-~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~ 235 (282)
.| .++.+|..+..+--.......+||.|+.--. -.+...|...+.++.++|||||.|++-.++-
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 12 2444555432111000000235999986433 3344455555555566699999999987763
No 273
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.74 E-value=0.012 Score=53.44 Aligned_cols=99 Identities=22% Similarity=0.269 Sum_probs=68.8
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
....++++|+-+|+| .|..++.+|+++. ++|+++|.+++-.+.|++. |- -.++.....+..+.+ .
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~-----~ 227 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAV-----K 227 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHh-----H
Confidence 445678899888877 5667888998875 9999999999988777764 22 233333222344444 2
Q ss_pred CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+.+|+|+.-.. . ..++...++ |++||.+++=...
T Consensus 228 ~~~d~ii~tv~-~---~~~~~~l~~---l~~~G~~v~vG~~ 261 (339)
T COG1064 228 EIADAIIDTVG-P---ATLEPSLKA---LRRGGTLVLVGLP 261 (339)
T ss_pred hhCcEEEECCC-h---hhHHHHHHH---HhcCCEEEEECCC
Confidence 45999997766 2 346667777 9999999885443
No 274
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.70 E-value=0.0017 Score=57.22 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=71.9
Q ss_pred CCCEEEEEcccccHHHH-HHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 119 GAQRCIEVGVYTGYSSL-AIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~-~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.+..|+|+-+|.||+|+ .+..+ + ...|+++|.+|..++..+++++.+++.++..++.||-...-+ ....|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-g-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~-------~~~Ad 264 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-G-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP-------RLRAD 264 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-C-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc-------cccch
Confidence 44789999999999999 44443 2 368999999999999999999999998888888888754322 46777
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCC-Cc-EEEEeCCC
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRV-GG-IIVIDNVL 234 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~Lkp-gG-~lv~dd~~ 234 (282)
-|.+.--+..-....-.+ +. ||| || ++=+|..+
T Consensus 265 rVnLGLlPSse~~W~~A~-k~---Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 265 RVNLGLLPSSEQGWPTAI-KA---LKPEGGSILHIHENV 299 (351)
T ss_pred heeeccccccccchHHHH-HH---hhhcCCcEEEEeccc
Confidence 777654433222222233 33 555 44 66565443
No 275
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.01 Score=50.43 Aligned_cols=98 Identities=19% Similarity=0.250 Sum_probs=65.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCC----CC----EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh--HHHHHH
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPE----SG----CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALI 188 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~----~~----~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~l~ 188 (282)
..++++|+.+..|.|+..+++.+-. .+ .+++||+.+-. .++. |.-+++|+.. ....++
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~G-V~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEG-VIQLQGDITSASTAEAII 108 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCc-eEEeecccCCHhHHHHHH
Confidence 4568999999999999999987622 22 39999997632 2333 7778888754 233333
Q ss_pred hCCCCCceeEEEEcCCc-----cccHH---------HHHHHHHhhcCCCCCcEEEEe
Q 023411 189 LNGEASSYDFAFVDAEK-----RMYQE---------YFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 189 ~~~~~~~fDlV~id~~~-----~~~~~---------~l~~~~~~~~~LkpgG~lv~d 231 (282)
.-...++.|+|++|+.+ ++..+ .+.....+ |+|||.+|..
T Consensus 109 ~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~V---lk~Gg~FVaK 162 (294)
T KOG1099|consen 109 EHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCV---LKPGGSFVAK 162 (294)
T ss_pred HHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhhe---ecCCCeeehh
Confidence 33234699999999763 22222 22333344 9999999874
No 276
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.58 E-value=0.0046 Score=57.16 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=52.2
Q ss_pred EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
.|||||+|||..+...+++.. -.|+++|.-..|.+.|++...++|.+++++++.-...|
T Consensus 69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 689999999999998888753 46999999999999999999999999999998766544
No 277
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.57 E-value=0.027 Score=51.61 Aligned_cols=104 Identities=20% Similarity=0.226 Sum_probs=69.6
Q ss_pred cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhCCCCCc
Q 023411 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASS 195 (282)
Q Consensus 118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~~~~~~ 195 (282)
.++.+|+-+|||. |..+..+++..+ ..+|+.+|.+++.++.|++.... +.+..... +.......+ .....
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~---t~g~g 238 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILEL---TGGRG 238 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHH---hCCCC
Confidence 3444899999994 777788888776 57999999999999999885531 11111111 121111111 11247
Q ss_pred eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411 196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLW 235 (282)
Q Consensus 196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~ 235 (282)
+|++|-... ....++.+.++ ++|||.+++=.+.-
T Consensus 239 ~D~vie~~G---~~~~~~~ai~~---~r~gG~v~~vGv~~ 272 (350)
T COG1063 239 ADVVIEAVG---SPPALDQALEA---LRPGGTVVVVGVYG 272 (350)
T ss_pred CCEEEECCC---CHHHHHHHHHH---hcCCCEEEEEeccC
Confidence 999997666 44467888888 99999998865543
No 278
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.56 E-value=0.038 Score=50.26 Aligned_cols=119 Identities=17% Similarity=0.220 Sum_probs=76.7
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHHHCCC---CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH--
Q 023411 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI-- 188 (282)
Q Consensus 114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~-- 188 (282)
+....++.+|||..+..|+-|+.+.+.+.. .+.|++=|.++..+.......+..... .+.+...++... +...
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~-p~~~~~ 227 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLF-PNIYLK 227 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceec-cccccc
Confidence 345678999999999999999999988742 358999999999888887777544332 345555444322 1111
Q ss_pred hCC--CCCceeEEEEcCCc------cccHHHH-----------------HHHHHhhcCCCCCcEEEEeCCC
Q 023411 189 LNG--EASSYDFAFVDAEK------RMYQEYF-----------------ELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 189 ~~~--~~~~fDlV~id~~~------~~~~~~l-----------------~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
..+ +...||-|++|.+. ....+.+ +.+.+-.++||+||.+|....-
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 111 24689999998541 1111111 1222223459999999987664
No 279
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.52 E-value=0.0038 Score=52.72 Aligned_cols=94 Identities=15% Similarity=0.069 Sum_probs=54.9
Q ss_pred CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~ 200 (282)
-++|||||-+....+.... --.|+.||+++.. -.+.+.|+.+.. + ...+.++||+|.
T Consensus 53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~----------------~~I~qqDFm~rp--l-p~~~~e~FdvIs 109 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH----------------PGILQQDFMERP--L-PKNESEKFDVIS 109 (219)
T ss_pred ceEEeecccCCCCcccccC----ceeeEEeecCCCC----------------CCceeeccccCC--C-CCCcccceeEEE
Confidence 5999999987765543322 2359999998742 244555665531 1 111268999997
Q ss_pred EcCC---ccccHHHHHHHHHhhcCCCCCcE-----EEEeCCCCCCcc
Q 023411 201 VDAE---KRMYQEYFELLLQLLLQIRVGGI-----IVIDNVLWHGKV 239 (282)
Q Consensus 201 id~~---~~~~~~~l~~~~~~~~~LkpgG~-----lv~dd~~~~g~~ 239 (282)
+.-+ .+....--+++.+...+|+|+|. |++ |+....+
T Consensus 110 ~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFl--VlP~~Cv 154 (219)
T PF11968_consen 110 LSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFL--VLPLPCV 154 (219)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEE--EeCchHh
Confidence 6533 22222333444444444999999 766 4444444
No 280
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.063 Score=46.33 Aligned_cols=113 Identities=17% Similarity=0.127 Sum_probs=79.2
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHHHCCCC---CEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh
Q 023411 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189 (282)
Q Consensus 113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~ 189 (282)
.++...++...+|+|+|+-.-+..+...+.+. .+++.||++...++...+.+...-..-.+.-+++|....+..++.
T Consensus 72 Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~ 151 (321)
T COG4301 72 EIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPR 151 (321)
T ss_pred HHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccC
Confidence 34556788999999999999999998887532 589999999998876555444322222377788888776665541
Q ss_pred CCCCCceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 190 NGEASSYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 190 ~~~~~~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
.+.==++|+... +.....++..+... |+||-++++.
T Consensus 152 ---~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a---~~pGd~~LlG 192 (321)
T COG4301 152 ---GGRRLFVFLGSTLGNLTPGECAVFLTQLRGA---LRPGDYFLLG 192 (321)
T ss_pred ---CCeEEEEEecccccCCChHHHHHHHHHHHhc---CCCcceEEEe
Confidence 123234555433 45566788888888 9999888773
No 281
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.44 E-value=0.0093 Score=56.39 Aligned_cols=102 Identities=12% Similarity=0.078 Sum_probs=72.8
Q ss_pred CCEEEEEcccccHHHHHHHHH---CCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 120 AQRCIEVGVYTGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
...|+-+|.|.|-......++ ..+.-++++||-+|.++...+. .+.....++|+++.+|..++.+. ..+.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap------~eq~ 440 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP------REQA 440 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc------hhhc
Confidence 345678899999886554443 3445789999999998866554 55556678999999999876531 2678
Q ss_pred eEEEEc-----CCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 197 DFAFVD-----AEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 197 DlV~id-----~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
|+++.. ++.+-.++=+.-+.+. |||+|+-|-.
T Consensus 441 DI~VSELLGSFGDNELSPECLDG~q~f---LkpdgIsIP~ 477 (649)
T KOG0822|consen 441 DIIVSELLGSFGDNELSPECLDGAQKF---LKPDGISIPS 477 (649)
T ss_pred cchHHHhhccccCccCCHHHHHHHHhh---cCCCceEccc
Confidence 988642 3344455667777787 9999886643
No 282
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.44 E-value=0.036 Score=49.64 Aligned_cols=110 Identities=19% Similarity=0.251 Sum_probs=71.9
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEE-EcchhhHHHHHHhCC-C
Q 023411 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK-HGLAADSLKALILNG-E 192 (282)
Q Consensus 116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~-~gd~~~~l~~l~~~~-~ 192 (282)
..+.+.+||-+|+| .|..+...|++++ ..+|+.+|+++..++.|++ + |.+. +... +.+..+.+.....+. .
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~-~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATV-TDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeE-EeeccccccHHHHHHHHHhhcc
Confidence 34678899999999 5888888999987 6799999999999999998 4 3332 2211 112123333333332 2
Q ss_pred CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcc
Q 023411 193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKV 239 (282)
Q Consensus 193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~ 239 (282)
...+|+.|-....+.. ++..... ++.||.+++ +.|....
T Consensus 240 ~~~~d~~~dCsG~~~~---~~aai~a---~r~gGt~vl--vg~g~~~ 278 (354)
T KOG0024|consen 240 KKQPDVTFDCSGAEVT---IRAAIKA---TRSGGTVVL--VGMGAEE 278 (354)
T ss_pred ccCCCeEEEccCchHH---HHHHHHH---hccCCEEEE--eccCCCc
Confidence 3568999966554432 3445555 899999887 4444443
No 283
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.42 E-value=0.0042 Score=55.75 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=76.7
Q ss_pred CCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHH-------HHHHHHHHhCCCC
Q 023411 99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE-------VAKKYYERAGVSH 171 (282)
Q Consensus 99 ~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~-------~a~~~~~~~g~~~ 171 (282)
+.-.+.++..-+++.++...+++.|.|=-.|||++.+..|.. ++.|+|.||+-.++. -.+.|+++.|..+
T Consensus 188 GnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~ 264 (421)
T KOG2671|consen 188 GNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSS 264 (421)
T ss_pred CCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcc
Confidence 345678888888999999999999999999999988777763 589999999887765 4578999988553
Q ss_pred -cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC
Q 023411 172 -KVKIKHGLAADSLKALILNGEASSYDFAFVDAE 204 (282)
Q Consensus 172 -~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~ 204 (282)
-+.++.+|.......- ...||.|+||++
T Consensus 265 ~fldvl~~D~sn~~~rs-----n~~fDaIvcDPP 293 (421)
T KOG2671|consen 265 QFLDVLTADFSNPPLRS-----NLKFDAIVCDPP 293 (421)
T ss_pred hhhheeeecccCcchhh-----cceeeEEEeCCC
Confidence 3577788876532221 479999999965
No 284
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.0047 Score=55.63 Aligned_cols=106 Identities=23% Similarity=0.260 Sum_probs=61.2
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
..+++|||+|.|.|.-...+-..+|+--.++-+|.|+..-++.... ..+-...+......|..+..-.++ -.+.|+
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl-~~nv~t~~td~r~s~vt~dRl~lp---~ad~yt 187 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTL-AENVSTEKTDWRASDVTEDRLSLP---AADLYT 187 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHH-HhhcccccCCCCCCccchhccCCC---ccceee
Confidence 4677899999999877666666677546788888887654444333 222222222223333322111111 147888
Q ss_pred EEEEcCC------ccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 198 FAFVDAE------KRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 198 lV~id~~------~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
++++-+. ......+++.++.+ +.|||.||+
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l---~~~gg~lVi 223 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNL---LAPGGHLVI 223 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHh---ccCCCeEEE
Confidence 8875332 22233355566666 999999987
No 285
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.16 E-value=0.026 Score=50.02 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=64.0
Q ss_pred EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i 201 (282)
+|+|+.||.|..+.-+.... -..+.++|+++.+++..+.|+.. .++++|..+..+... ...+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~----~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDF----IPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhc----CCCCCEEEe
Confidence 68999999999988877642 23589999999988887776642 256677766543210 257999997
Q ss_pred cCCc------------cc-cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 202 DAEK------------RM-YQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 202 d~~~------------~~-~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+.+. .+ ....+..+.++...++|. +++++||.
T Consensus 69 gpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~ 113 (275)
T cd00315 69 GFPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVK 113 (275)
T ss_pred CCCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCc
Confidence 6541 11 111222333333336777 88999984
No 286
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.029 Score=44.52 Aligned_cols=109 Identities=13% Similarity=0.059 Sum_probs=76.5
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (282)
Q Consensus 109 ~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~ 188 (282)
+-+..++..++..+.+|+|+|.|.+.+..++..- -.-+|+|++|-....++-..-.+|...+.+|..-|.-.. +
T Consensus 62 ~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~--d-- 135 (199)
T KOG4058|consen 62 ENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV--D-- 135 (199)
T ss_pred HHHHHHccCCCCCcEEeccCCCceeehhhhhhCC--CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc--c--
Confidence 3344555566778999999999999998887631 357899999988888887777788888888876665432 1
Q ss_pred hCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 189 ~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
-..|..+.+.+.....++.-..+..- +..|..++.
T Consensus 136 ----l~dy~~vviFgaes~m~dLe~KL~~E---~p~nt~vva 170 (199)
T KOG4058|consen 136 ----LRDYRNVVIFGAESVMPDLEDKLRTE---LPANTRVVA 170 (199)
T ss_pred ----ccccceEEEeehHHHHhhhHHHHHhh---CcCCCeEEE
Confidence 24566666666655555555555534 667776665
No 287
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.06 E-value=0.019 Score=54.24 Aligned_cols=129 Identities=14% Similarity=0.178 Sum_probs=75.0
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEec--CccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER--DARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~--s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
..-++|+|..+|.|+++..|... ..-|.-|-. .+..+.. +-..|+-. +.-|.+|.++.. ..+
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~---~VWVMNVVP~~~~ntL~v----IydRGLIG----~yhDWCE~fsTY-----PRT 427 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD---PVWVMNVVPVSGPNTLPV----IYDRGLIG----VYHDWCEAFSTY-----PRT 427 (506)
T ss_pred cceeeeeeecccccHHHHHhccC---CceEEEecccCCCCcchh----hhhcccch----hccchhhccCCC-----Ccc
Confidence 34568999999999999888752 222222221 2222222 22233321 222455554444 589
Q ss_pred eeEEEEcCCc------cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEE
Q 023411 196 YDFAFVDAEK------RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM 269 (282)
Q Consensus 196 fDlV~id~~~------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (282)
||+|-.++.. ......+-++-++ |||||.+++.|-. .+-+-.+.+...=++++.+
T Consensus 428 YDLlHA~~lfs~~~~rC~~~~illEmDRI---LRP~G~~iiRD~~----------------~vl~~v~~i~~~lrW~~~~ 488 (506)
T PF03141_consen 428 YDLLHADGLFSLYKDRCEMEDILLEMDRI---LRPGGWVIIRDTV----------------DVLEKVKKIAKSLRWEVRI 488 (506)
T ss_pred hhheehhhhhhhhcccccHHHHHHHhHhh---cCCCceEEEeccH----------------HHHHHHHHHHHhCcceEEE
Confidence 9999877552 2344555666666 9999999996542 1122233344444777777
Q ss_pred eecC------CceEEEEE
Q 023411 270 VPIG------DGMTICQK 281 (282)
Q Consensus 270 lp~~------~Gl~~~~k 281 (282)
...- .++++|+|
T Consensus 489 ~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 489 HDTEDGPDGPEKILICQK 506 (506)
T ss_pred EecCCCCCCCceEEEEEC
Confidence 7654 45888886
No 288
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.77 E-value=0.1 Score=48.34 Aligned_cols=108 Identities=18% Similarity=0.214 Sum_probs=67.4
Q ss_pred HHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc-hhhHHHHHHhCC
Q 023411 114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNG 191 (282)
Q Consensus 114 l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd-~~~~l~~l~~~~ 191 (282)
.....++.+||.+|+|. |..+..+++..+ ..++++++.+++..+.+++.. +. ..+.....+ ..+.+..+ .
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~---~ 250 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALREL---T 250 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHH---c
Confidence 34456778999999987 888888998874 246999999998888777642 22 112222221 22222222 1
Q ss_pred CCCceeEEEEcCCcc------------------ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 192 EASSYDFAFVDAEKR------------------MYQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 192 ~~~~fDlV~id~~~~------------------~~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
....+|+||-....+ +....++.+.+. ++++|.++.=.
T Consensus 251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~G~iv~~g 306 (386)
T cd08283 251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQA---VRKGGTVSIIG 306 (386)
T ss_pred CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHH---hccCCEEEEEc
Confidence 134689887643211 124456777787 99999887743
No 289
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.67 E-value=0.16 Score=42.99 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=60.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCC-CEEEEEecCccHHHHHHHHHHHh------------------------------
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPES-GCLVACERDARSLEVAKKYYERA------------------------------ 167 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~-~~v~~iD~s~~~~~~a~~~~~~~------------------------------ 167 (282)
.+-++.|-.||+|+..-.+.---++. ..|++-|+++++++.|++|+...
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 55689999999999866555433222 57999999999999999885421
Q ss_pred -----------CCCCcEEEEEcchhhHHH--HHHhCCCCCceeEEEEcCCc-------c-----ccHHHHHHHHHhhcCC
Q 023411 168 -----------GVSHKVKIKHGLAADSLK--ALILNGEASSYDFAFVDAEK-------R-----MYQEYFELLLQLLLQI 222 (282)
Q Consensus 168 -----------g~~~~v~~~~gd~~~~l~--~l~~~~~~~~fDlV~id~~~-------~-----~~~~~l~~~~~~~~~L 222 (282)
|-.....+.+.|..+.-. ... . ....|+|+.|-+. . -...+++.+.+. |
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~--~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~v---L 204 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-A--GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPV---L 204 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-T--T---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCC---S
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhc-c--CCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhh---C
Confidence 111135677777766322 221 1 2346999998542 1 134466667666 9
Q ss_pred CCCcEEEEe
Q 023411 223 RVGGIIVID 231 (282)
Q Consensus 223 kpgG~lv~d 231 (282)
..++++++.
T Consensus 205 p~~sVV~v~ 213 (246)
T PF11599_consen 205 PERSVVAVS 213 (246)
T ss_dssp -TT-EEEEE
T ss_pred CCCcEEEEe
Confidence 777888773
No 290
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.61 E-value=0.05 Score=41.84 Aligned_cols=91 Identities=20% Similarity=0.264 Sum_probs=60.4
Q ss_pred cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcccc
Q 023411 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY 208 (282)
Q Consensus 129 G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~ 208 (282)
|.|..++.+++..+ ++|+++|.++...+.+++ .|.. .++..+..+..+.+.+......+|+||-....
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~--- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS--- 68 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTES---EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hccc---ccccccccccccccccccccccceEEEEecCc---
Confidence 46888999999885 999999999987776654 3422 22332222233333222212489999976653
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 209 QEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 209 ~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
...++...++ ++++|.+++=...
T Consensus 69 ~~~~~~~~~~---l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 69 GDTLQEAIKL---LRPGGRIVVVGVY 91 (130)
T ss_dssp HHHHHHHHHH---EEEEEEEEEESST
T ss_pred HHHHHHHHHH---hccCCEEEEEEcc
Confidence 3467788888 9999999885554
No 291
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.19 E-value=0.26 Score=47.38 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=66.4
Q ss_pred cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEE--Ec-------------chh
Q 023411 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--HG-------------LAA 181 (282)
Q Consensus 118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~--~g-------------d~~ 181 (282)
.++.+|+-+|+|. |..++..++.++ ++|+++|.+++.++.+++ .|... +.+- .. +..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~~-v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAEF-LELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeE-EEeccccccccccchhhhcchhHH
Confidence 4688999999994 777888888875 689999999998887766 23220 1110 00 110
Q ss_pred hHHHHHHhCCCCCceeEEEEcCCccc--cHHH-HHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411 182 DSLKALILNGEASSYDFAFVDAEKRM--YQEY-FELLLQLLLQIRVGGIIVIDNVLWHG 237 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~~~~--~~~~-l~~~~~~~~~LkpgG~lv~dd~~~~g 237 (282)
+.......+. -..+|+||....... .+.. .+...+. +||||+++.=.+-..|
T Consensus 236 ~~~~~~~~~~-~~gaDVVIetag~pg~~aP~lit~~~v~~---mkpGgvIVdvg~~~GG 290 (509)
T PRK09424 236 KAEMALFAEQ-AKEVDIIITTALIPGKPAPKLITAEMVAS---MKPGSVIVDLAAENGG 290 (509)
T ss_pred HHHHHHHHhc-cCCCCEEEECCCCCcccCcchHHHHHHHh---cCCCCEEEEEccCCCC
Confidence 1000110000 146899997765322 2233 4777787 9999998765443334
No 292
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.07 E-value=0.21 Score=43.37 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=62.3
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh-----CCCCcEEEEEcchhhH--HHHHHhCC
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-----GVSHKVKIKHGLAADS--LKALILNG 191 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-----g~~~~v~~~~gd~~~~--l~~l~~~~ 191 (282)
...+|||+|+|+|..++.++... .+.|+..|... ..+..+.+...+ .+...+.+..-+..+. ....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~---- 158 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR---- 158 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc----
Confidence 46689999999998888777654 47888888743 444444432222 2222344433332221 1111
Q ss_pred CCCc-eeEEEEcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 192 EASS-YDFAFVDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 192 ~~~~-fDlV~id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
.+. +|+|+...+ .+.+......+..+ |..+|++.+.--+
T Consensus 159 -~~~~~DlilasDvvy~~~~~e~Lv~tla~l---l~~~~~i~l~~~l 201 (248)
T KOG2793|consen 159 -LPNPFDLILASDVVYEEESFEGLVKTLAFL---LAKDGTIFLAYPL 201 (248)
T ss_pred -cCCcccEEEEeeeeecCCcchhHHHHHHHH---HhcCCeEEEEEec
Confidence 234 899886433 44566677788888 8888866554333
No 293
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=94.99 E-value=0.18 Score=40.12 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=54.0
Q ss_pred CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~ 200 (282)
.-|||+|-|.|..=-.+-+.+| +-+++.+|..-.... . ...+.-.++.||+.+.++.+..- ..+.-++-
T Consensus 30 G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp---~-----~~P~~~~~ilGdi~~tl~~~~~~--g~~a~laH 98 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHP---S-----STPPEEDLILGDIRETLPALARF--GAGAALAH 98 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-G---G-----G---GGGEEES-HHHHHHHHHHH---S-EEEEE
T ss_pred CceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCC---C-----CCCchHheeeccHHHHhHHHHhc--CCceEEEE
Confidence 5799999999998888999998 789999996422110 0 01222478999999988873222 24555666
Q ss_pred EcCCccc---cHHHH----HHHHHhhcCCCCCcEEEEeCCCC
Q 023411 201 VDAEKRM---YQEYF----ELLLQLLLQIRVGGIIVIDNVLW 235 (282)
Q Consensus 201 id~~~~~---~~~~l----~~~~~~~~~LkpgG~lv~dd~~~ 235 (282)
.|-...+ -.... ..+..+ |.|||++|-+..+.
T Consensus 99 aD~G~g~~~~d~a~a~~lspli~~~---la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 99 ADIGTGDKEKDDATAAWLSPLIAPV---LAPGGIMVSGQPLY 137 (160)
T ss_dssp E----S-HHHHHHHHHHHHHHHGGG---EEEEEEEEESS---
T ss_pred eecCCCCcchhHHHHHhhhHHHHHH---hcCCcEEEeCCccc
Confidence 6644222 11222 233455 99999999987765
No 294
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.95 E-value=0.041 Score=46.99 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=61.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHh-CCCCcEEEEEcchh-hHHHHHHhCCCCCc
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAA-DSLKALILNGEASS 195 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~gd~~-~~l~~l~~~~~~~~ 195 (282)
+.-++||||+| .+.++=.-... -+-+++|.|+++..++.|+..+..+ ++...+++....-. .+++.+.. ..+.
T Consensus 78 ~~i~~LDIGvG--AnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig--~nE~ 153 (292)
T COG3129 78 KNIRILDIGVG--ANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG--KNER 153 (292)
T ss_pred CceEEEeeccC--cccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc--ccce
Confidence 34478999975 44444332222 1458999999999999999999988 77777777754322 23343321 1589
Q ss_pred eeEEEEcCCccccHHHHHHH
Q 023411 196 YDFAFVDAEKRMYQEYFELL 215 (282)
Q Consensus 196 fDlV~id~~~~~~~~~l~~~ 215 (282)
||++.|+.+.+...+.+..-
T Consensus 154 yd~tlCNPPFh~s~~da~~g 173 (292)
T COG3129 154 YDATLCNPPFHDSAADARAG 173 (292)
T ss_pred eeeEecCCCcchhHHHHHhc
Confidence 99999998866555444333
No 295
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.88 E-value=0.67 Score=40.68 Aligned_cols=110 Identities=12% Similarity=0.157 Sum_probs=66.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC--CCcEEEEEcchhhH-HHHHHhCC-CCC
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAADS-LKALILNG-EAS 194 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~v~~~~gd~~~~-l~~l~~~~-~~~ 194 (282)
....|+.+|||.=.-...+ ..+.+.+++=+|. |+.++.-++.+...+. ..+.+++..|..+. ...+...+ +.+
T Consensus 81 g~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRL--PWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred CCcEEEEeCCccccHHHhc--CCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 3557999999754333333 2333466777776 5677777777776543 45688999888643 33333222 122
Q ss_pred ceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 195 SYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 195 ~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
..-++++.+. .+.....+..+.+. ..||+.|++|-+-
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~---~~~gs~l~~d~~~ 199 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAEL---SAPGSRLAFDYVR 199 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHh---CCCCcEEEEEecc
Confidence 3335555554 33455567777666 7799999998654
No 296
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.81 E-value=0.094 Score=39.56 Aligned_cols=88 Identities=24% Similarity=0.249 Sum_probs=56.1
Q ss_pred ccccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCceeEEEEcCC
Q 023411 128 VYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDFAFVDAE 204 (282)
Q Consensus 128 ~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~fDlV~id~~ 204 (282)
||.|..+..+++.+.+++ .|+.+|.+++..+.+++. + +.++.||..+. +... + -.+.|.|++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a---~-i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERA---G-IEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHT---T-GGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhc---C-ccccCEEEEccC
Confidence 667889999888876556 899999999886655432 2 67899998763 3322 1 468888888765
Q ss_pred ccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 205 KRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 205 ~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
.....-..-...+- +.|...+++
T Consensus 72 ~d~~n~~~~~~~r~---~~~~~~ii~ 94 (116)
T PF02254_consen 72 DDEENLLIALLARE---LNPDIRIIA 94 (116)
T ss_dssp SHHHHHHHHHHHHH---HTTTSEEEE
T ss_pred CHHHHHHHHHHHHH---HCCCCeEEE
Confidence 33322222222333 577777766
No 297
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.75 E-value=0.26 Score=44.74 Aligned_cols=99 Identities=20% Similarity=0.269 Sum_probs=59.0
Q ss_pred cCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 118 ~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
.++++||-+|+| .|..+..+++... ..+|+++|.+++.++.+++ .|...-+.....+. ...... .+.+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~----~~~~~~--~g~~ 236 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDL----DHYKAE--KGYF 236 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccH----HHHhcc--CCCC
Confidence 357789888875 3555666777653 2379999999988877664 34332111111122 111111 2468
Q ss_pred eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
|+||-..... ..++.+.++ |++||.++.=..
T Consensus 237 D~vid~~G~~---~~~~~~~~~---l~~~G~iv~~G~ 267 (343)
T PRK09880 237 DVSFEVSGHP---SSINTCLEV---TRAKGVMVQVGM 267 (343)
T ss_pred CEEEECCCCH---HHHHHHHHH---hhcCCEEEEEcc
Confidence 9988554422 345667777 999999887543
No 298
>PRK13699 putative methylase; Provisional
Probab=94.73 E-value=0.055 Score=46.53 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=38.0
Q ss_pred EEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc--------------c----cHHHHHHHHHhhcCCCCCcEEEE
Q 023411 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR--------------M----YQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 173 v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~--------------~----~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
+++++||..+.+..++ ++++|+||.|++.. . ....+.++.++ |||||.+++
T Consensus 2 ~~l~~gD~le~l~~lp----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RV---LKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFP----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRV---LKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCC----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHH---cCCCCEEEE
Confidence 4788999999888775 68999999997642 0 12345556666 999998875
No 299
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.56 E-value=0.22 Score=44.57 Aligned_cols=119 Identities=15% Similarity=0.188 Sum_probs=72.7
Q ss_pred EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i 201 (282)
+++|+-||.|.+++-+..+. --.+.++|+++.+.+.-+.|+. ....+|+.+...... .+.+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l----~~~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL----PKDVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH----HHT-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc----cccceEEEe
Confidence 69999999999999888752 1368999999998888777764 778888887644322 125899886
Q ss_pred cCCc---------------c--ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCC
Q 023411 202 DAEK---------------R--MYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDER 264 (282)
Q Consensus 202 d~~~---------------~--~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (282)
..+. . -+..+++.+.. ++|. +++++||- |.+. ......++.+.+.+.+- +
T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~----~~Pk-~~~~ENV~--~l~~-----~~~~~~~~~i~~~l~~l-G 134 (335)
T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKE----LKPK-YFLLENVP--GLLS-----SKNGEVFKEILEELEEL-G 134 (335)
T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHHHHHHH----HS-S-EEEEEEEG--GGGT-----GGGHHHHHHHHHHHHHT-T
T ss_pred ccCCceEeccccccccccccchhhHHHHHHHhh----ccce-EEEecccc--eeec-----ccccccccccccccccc-c
Confidence 4320 1 13344444444 6885 78889983 2221 11123455566665443 5
Q ss_pred eEE
Q 023411 265 VSI 267 (282)
Q Consensus 265 ~~~ 267 (282)
|.+
T Consensus 135 Y~v 137 (335)
T PF00145_consen 135 YNV 137 (335)
T ss_dssp EEE
T ss_pred eee
Confidence 555
No 300
>PRK11524 putative methyltransferase; Provisional
Probab=94.51 E-value=0.086 Score=46.86 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=38.8
Q ss_pred cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc---------------c----HHHHHHHHHhhcCCCCCcEEEEe
Q 023411 172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM---------------Y----QEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 172 ~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~---------------~----~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
..+++++|..+.+..+. +++||+||+|++... + ...+..+.++ |||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rv---LK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIP----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRV---LKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcc----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHH---hCCCcEEEEE
Confidence 35789999998776653 579999999976310 1 2355666666 9999999874
No 301
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.50 E-value=0.43 Score=42.63 Aligned_cols=100 Identities=22% Similarity=0.333 Sum_probs=60.7
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
...++.+||..|+| .|..+..+++.. +.+|++++.+++..+.+++ .|....+.....+..+.+ .. ....
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~---~~~~ 231 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AA---GLGG 231 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HH---hcCC
Confidence 34567788888876 477777888876 4789999999887766543 344321111111121222 11 1146
Q ss_pred ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
.+|+++..... ...++.+.+. |+++|.++.-
T Consensus 232 ~~D~vid~~g~---~~~~~~~~~~---l~~~G~~v~~ 262 (338)
T cd08254 232 GFDVIFDFVGT---QPTFEDAQKA---VKPGGRIVVV 262 (338)
T ss_pred CceEEEECCCC---HHHHHHHHHH---hhcCCEEEEE
Confidence 79988754332 2346677787 9999998864
No 302
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.43 E-value=0.073 Score=41.29 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=52.8
Q ss_pred cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc-----cc-cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCC
Q 023411 172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RM-YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVN 245 (282)
Q Consensus 172 ~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~-----~~-~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~ 245 (282)
.+++..||+.+.++.+ ...+|.||.|+.. +. ..++++.+.++ ++|||++..-.+- |
T Consensus 32 ~L~L~~gDa~~~l~~l-----~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~---~~~~~~l~Tys~a--~-------- 93 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL-----DARFDAWYLDGFSPAKNPELWSEELFKKLARL---SKPGGTLATYSSA--G-------- 93 (124)
T ss_dssp EEEEEES-HHHHHHHB------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHH---EEEEEEEEES--B--H--------
T ss_pred EEEEEEcHHHHHHHhC-----cccCCEEEecCCCCcCCcccCCHHHHHHHHHH---hCCCcEEEEeech--H--------
Confidence 4788899999998887 6899999999751 21 46688999998 9999998773321 1
Q ss_pred ChhhHHHHHHHHHhhhCCCeEEEEeec---CCceEEEEE
Q 023411 246 DAKTISIRNFNKNLMEDERVSISMVPI---GDGMTICQK 281 (282)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~lp~---~~Gl~~~~k 281 (282)
.+|.=+ ..-+|.+...|- ...++.+.|
T Consensus 94 -----~Vr~~L----~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 94 -----AVRRAL----QQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp -----HHHHHH----HHCTEEEEEEE-STTSSEEEEEEC
T ss_pred -----HHHHHH----HHcCCEEEEcCCCCCcchheEEEc
Confidence 133322 245888887773 344555554
No 303
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.35 E-value=0.32 Score=44.15 Aligned_cols=94 Identities=18% Similarity=0.098 Sum_probs=56.8
Q ss_pred cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
.++++||-+|+|. |..+..+++......+|+++|.+++.++.+++ .+. . ... .+. .. ...+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~~---~~~-~~------~~g~ 223 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YLI---DDI-PE------DLAV 223 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-eeh---hhh-hh------ccCC
Confidence 5678999999753 33445556542214689999999887777654 221 1 110 111 11 2358
Q ss_pred eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
|+||-..........++...++ |++||.+++=.
T Consensus 224 d~viD~~G~~~~~~~~~~~~~~---l~~~G~iv~~G 256 (341)
T cd08237 224 DHAFECVGGRGSQSAINQIIDY---IRPQGTIGLMG 256 (341)
T ss_pred cEEEECCCCCccHHHHHHHHHh---CcCCcEEEEEe
Confidence 9888544322234457777788 99999988643
No 304
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.29 E-value=0.13 Score=43.30 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHH
Q 023411 106 DQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK 162 (282)
Q Consensus 106 ~~~~ll~~l~~~--~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~ 162 (282)
.-..++..++.. .+++.|||.-||+|..+....+ + +-+.+|+|++++..+.|++
T Consensus 176 kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~-l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEE-L--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHH-T--T-EEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhccceeeehhhhccChHHHHHHH-c--CCeEEEEeCCHHHHHHhcC
Confidence 334455555543 5788999999999987776665 3 3479999999999998874
No 305
>PRK11524 putative methyltransferase; Provisional
Probab=94.28 E-value=0.15 Score=45.40 Aligned_cols=56 Identities=5% Similarity=-0.006 Sum_probs=44.7
Q ss_pred HHHHHHHHhh--cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH
Q 023411 108 AQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 166 (282)
Q Consensus 108 ~~ll~~l~~~--~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 166 (282)
..++..++.. .+++.|||--+|+|..++...+ + +-+++|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~-l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKA-S--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHH-c--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 4566666654 5788999999999987766555 3 35899999999999999999864
No 306
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.08 E-value=0.056 Score=47.54 Aligned_cols=91 Identities=20% Similarity=0.161 Sum_probs=61.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
.+..++|+|||.|-.+. ..+.+.++++|++...+..+++. +......+|+...... +.+||.
T Consensus 45 ~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~------~~s~d~ 106 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFR------EESFDA 106 (293)
T ss_pred CcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCC------CCcccc
Confidence 35678999999996532 11357899999998877655531 2125666777654322 689999
Q ss_pred EEEcCCccc------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411 199 AFVDAEKRM------YQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 199 V~id~~~~~------~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
++.-+..++ ....++.+.+. |+|||-..+
T Consensus 107 ~lsiavihhlsT~~RR~~~l~e~~r~---lrpgg~~lv 141 (293)
T KOG1331|consen 107 ALSIAVIHHLSTRERRERALEELLRV---LRPGGNALV 141 (293)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHH---hcCCCceEE
Confidence 876655433 34466777777 999998766
No 307
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.87 E-value=0.18 Score=48.77 Aligned_cols=102 Identities=11% Similarity=0.135 Sum_probs=63.8
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh-----HHHHHHhCC
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD-----SLKALILNG 191 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~-----~l~~l~~~~ 191 (282)
+.++..|||+||..|+|....++.+|.++-|+|||+-|-- .+.+ +..++.|+.. .+.....
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~-c~t~v~dIttd~cr~~l~k~l~-- 107 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPN-CDTLVEDITTDECRSKLRKILK-- 107 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCc-cchhhhhhhHHHHHHHHHHHHH--
Confidence 3467789999999999999999999988899999997631 1222 3333333321 1122221
Q ss_pred CCCceeEEEEcCCccc--------------cHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411 192 EASSYDFAFVDAEKRM--------------YQEYFELLLQLLLQIRVGGIIVIDNVLWHG 237 (282)
Q Consensus 192 ~~~~fDlV~id~~~~~--------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g 237 (282)
..+.|+|+.|+.+.- ....+...... |+.||. +++.++.+.
T Consensus 108 -t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~---l~~~g~-fvtkvfrs~ 162 (780)
T KOG1098|consen 108 -TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEF---LAKGGT-FVTKVFRSE 162 (780)
T ss_pred -hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHH---HHhcCc-cccccccCC
Confidence 356699999876321 11223344444 899999 555565443
No 308
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.28 Score=44.68 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=40.1
Q ss_pred CCEEEEEcccccHHHHHHHHHCC-------CCCEEEEEecCccHHHHHHHHHHHhC
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLP-------ESGCLVACERDARSLEVAKKYYERAG 168 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~-------~~~~v~~iD~s~~~~~~a~~~~~~~g 168 (282)
+-.++|||.|+|....-+++.+. ...++.-||+|++..+.-++.++...
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 45799999999999988887651 14789999999999988888887543
No 309
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.82 E-value=0.38 Score=46.30 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=32.9
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHH
Q 023411 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKK 162 (282)
Q Consensus 119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~ 162 (282)
++.+|+-+|+|. |..+..+++.++ +.|+.+|.+++.++.+++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 567999999984 566777777764 789999999987766654
No 310
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=93.73 E-value=0.95 Score=41.25 Aligned_cols=101 Identities=13% Similarity=0.129 Sum_probs=62.3
Q ss_pred HhhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhCC
Q 023411 115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNG 191 (282)
Q Consensus 115 ~~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~~ 191 (282)
....++++||=.|+ |.|..+..+++.. +.++++++.+++..+.+++. .|...-+..... +..+.+... .
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~---~ 225 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRY---F 225 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHH---C
Confidence 44567889998887 3677788888876 47899999888766555422 344321221111 222222222 1
Q ss_pred CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
.+.+|+||-... . ..+..+.++ |++||.+++=
T Consensus 226 -~~gvD~v~d~vG-~---~~~~~~~~~---l~~~G~iv~~ 257 (348)
T PLN03154 226 -PEGIDIYFDNVG-G---DMLDAALLN---MKIHGRIAVC 257 (348)
T ss_pred -CCCcEEEEECCC-H---HHHHHHHHH---hccCCEEEEE
Confidence 246898884333 2 246677777 9999998863
No 311
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.63 E-value=0.71 Score=42.38 Aligned_cols=101 Identities=24% Similarity=0.307 Sum_probs=59.0
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
...++++||-.|+| .|..+..+++.. +. +|+++|.+++..+.+++ .|...-+.....+..+.+..+. .
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~----~ 257 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT----G 257 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh----C
Confidence 34567888888875 244556666655 35 69999999988777654 3443211211112222222221 2
Q ss_pred CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
+.+|+||-.... ...+....++ ++++|.++.-.
T Consensus 258 ~g~d~vid~~G~---~~~~~~~~~~---l~~~G~iv~~G 290 (371)
T cd08281 258 GGVDYAFEMAGS---VPALETAYEI---TRRGGTTVTAG 290 (371)
T ss_pred CCCCEEEECCCC---hHHHHHHHHH---HhcCCEEEEEc
Confidence 368988854332 2345666777 99999887643
No 312
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.58 E-value=0.3 Score=44.74 Aligned_cols=53 Identities=23% Similarity=0.306 Sum_probs=42.4
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHH
Q 023411 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK 162 (282)
Q Consensus 108 ~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~ 162 (282)
.+++..+....+.+.|+|+|+|-|+.+..++-.. +-.|.+||-|....+.|++
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence 4556666777888999999999999999998765 4789999999766555543
No 313
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=93.52 E-value=0.19 Score=40.08 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=29.3
Q ss_pred EEccccc--HHHHHHH-HHCCCCCEEEEEecCccHHHHHHHH--HHHhC
Q 023411 125 EVGVYTG--YSSLAIA-LVLPESGCLVACERDARSLEVAKKY--YERAG 168 (282)
Q Consensus 125 EIG~G~G--~~t~~la-~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~g 168 (282)
|||++.| ..+.+++ +...++++|+++|++|...+..+++ +..++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~ 49 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND 49 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC
Confidence 8999999 6666664 2344478999999999999999888 55543
No 314
>PRK13699 putative methylase; Provisional
Probab=93.26 E-value=0.32 Score=41.83 Aligned_cols=56 Identities=9% Similarity=0.000 Sum_probs=43.4
Q ss_pred HHHHHHHh--hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh
Q 023411 109 QLLAMLVQ--ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167 (282)
Q Consensus 109 ~ll~~l~~--~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~ 167 (282)
.++..++. ..+++.|||--||+|..+....+. +-+++|+|++++..+.+.++++..
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 34555543 357889999999999877766653 358999999999999999988753
No 315
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.26 E-value=0.87 Score=41.37 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=60.5
Q ss_pred hhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
...++.+|+-+|+|. |..+..+++.. +.+++++|.+++.++.+++ .|...-+.....+..+....+.......
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~~ 236 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKAR 236 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcccC
Confidence 445678999999864 66667777776 4689999999988776654 3443212211111112222221111123
Q ss_pred cee----EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 195 SYD----FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 195 ~fD----lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
.+| +|| |..-. ...++...++ |++||.+++=...
T Consensus 237 g~d~~~d~v~-d~~g~--~~~~~~~~~~---l~~~G~iv~~G~~ 274 (349)
T TIGR03201 237 GLRSTGWKIF-ECSGS--KPGQESALSL---LSHGGTLVVVGYT 274 (349)
T ss_pred CCCCCcCEEE-ECCCC--hHHHHHHHHH---HhcCCeEEEECcC
Confidence 455 444 44422 2345566777 9999998875543
No 316
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.23 E-value=0.23 Score=43.29 Aligned_cols=47 Identities=19% Similarity=0.077 Sum_probs=37.8
Q ss_pred CCEEEEEcccccHHHHHHHHHCCC-------CCEEEEEecCccHHHHHHHHHHH
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPE-------SGCLVACERDARSLEVAKKYYER 166 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~-------~~~v~~iD~s~~~~~~a~~~~~~ 166 (282)
+-+|+|+|+|+|..+..+++.+.. ..+++-||+||.+.+..++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999999999987753 25899999999999888888765
No 317
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.21 E-value=0.11 Score=47.45 Aligned_cols=82 Identities=24% Similarity=0.283 Sum_probs=68.8
Q ss_pred CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (282)
Q Consensus 101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (282)
+.+.....-+..+++...++..|+|+.|..|..|..++..+...++++|+|.+++..+..++.+..+|.+. ++...+|+
T Consensus 195 ~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df 273 (413)
T KOG2360|consen 195 FILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDF 273 (413)
T ss_pred eEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccc
Confidence 34445555566777777888999999999999999999988767999999999999999999999999875 77778888
Q ss_pred hhH
Q 023411 181 ADS 183 (282)
Q Consensus 181 ~~~ 183 (282)
...
T Consensus 274 ~~t 276 (413)
T KOG2360|consen 274 LNT 276 (413)
T ss_pred cCC
Confidence 763
No 318
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.20 E-value=1.2 Score=40.69 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=60.0
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
...++++||-.|+| .|..++.+++.. +. +|+++|.+++..+.+++ .|.+.-+.....+..+.+... ...
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~---~~~ 243 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRAL---TGG 243 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHH---hCC
Confidence 44577899988875 244556677765 35 59999999887777643 343221222222222222222 112
Q ss_pred CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
..+|+||-.... ...+....+. +++||.+++=..
T Consensus 244 ~g~d~vid~~g~---~~~~~~~~~~---~~~~G~iv~~G~ 277 (358)
T TIGR03451 244 FGADVVIDAVGR---PETYKQAFYA---RDLAGTVVLVGV 277 (358)
T ss_pred CCCCEEEECCCC---HHHHHHHHHH---hccCCEEEEECC
Confidence 468988743332 2335566677 999999887443
No 319
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=92.94 E-value=0.42 Score=42.77 Aligned_cols=104 Identities=17% Similarity=0.153 Sum_probs=58.9
Q ss_pred CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcE---------------------------
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV--------------------------- 173 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v--------------------------- 173 (282)
-+||-=|||.|..+..++.... .+-|=|.|--|+=...=.+....+++.+
T Consensus 152 i~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 152 IRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred ceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 4789999999999999997532 3333355544432222122111122222
Q ss_pred ------------EEEEcchhhHHHHHHhCCCCCceeEEE----EcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 174 ------------KIKHGLAADSLKALILNGEASSYDFAF----VDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 174 ------------~~~~gd~~~~l~~l~~~~~~~~fDlV~----id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
.+..||+.+..+.- ...+.||+|+ +|.. ++..+|++.+.++ |+|||+.|==..+
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s---~~~~~~d~VvTcfFIDTa-~NileYi~tI~~i---Lk~GGvWiNlGPL 298 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTS---SGAGSYDVVVTCFFIDTA-HNILEYIDTIYKI---LKPGGVWINLGPL 298 (369)
T ss_pred cccccCCCCCCccccccceeEEecCc---CCCCccceEEEEEEeech-HHHHHHHHHHHHh---ccCCcEEEeccce
Confidence 22224443332210 0124789885 3433 5677889999999 9999988754443
No 320
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.86 E-value=1.1 Score=40.15 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=63.2
Q ss_pred CCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 120 AQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 120 ~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
+.+|.-||-| .|..+..+|-.+ ++.|+-+|+|.+.+......+. .|++....+...+.... .+.|+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v------~~aDl 234 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAV------KKADL 234 (371)
T ss_pred CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHh------hhccE
Confidence 3466778877 477788888766 4899999999998877666553 46777776665544433 67888
Q ss_pred EEEc---CCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 199 AFVD---AEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 199 V~id---~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
++-- .......-..++..+. +|||++||=
T Consensus 235 vIgaVLIpgakaPkLvt~e~vk~---MkpGsVivD 266 (371)
T COG0686 235 VIGAVLIPGAKAPKLVTREMVKQ---MKPGSVIVD 266 (371)
T ss_pred EEEEEEecCCCCceehhHHHHHh---cCCCcEEEE
Confidence 7632 2222223345555555 899988763
No 321
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.86 E-value=1.2 Score=41.13 Aligned_cols=105 Identities=11% Similarity=0.247 Sum_probs=60.4
Q ss_pred CEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC------C-
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------E- 192 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~------~- 192 (282)
.+|--||- ||.++.+|-.+.. +.+|+|+|+++..++..+. | +..+..-+..+.+......+ +
T Consensus 10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~ 79 (436)
T COG0677 10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP 79 (436)
T ss_pred eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence 45666665 5666665555432 4689999999987654332 2 23333333333233332221 1
Q ss_pred --CCceeEEEEcCC-------ccc---cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 193 --ASSYDFAFVDAE-------KRM---YQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 193 --~~~fDlV~id~~-------~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
-..-|++++.-+ ..+ ..+..+.+.+. |++|-+++++...++|+
T Consensus 80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~---L~kG~LVIlEST~~PGT 134 (436)
T COG0677 80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPV---LKKGDLVILESTTPPGT 134 (436)
T ss_pred hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHh---cCCCCEEEEecCCCCCc
Confidence 125577665422 112 23344555566 99999999999999998
No 322
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.70 E-value=1.6 Score=37.36 Aligned_cols=98 Identities=21% Similarity=0.266 Sum_probs=59.2
Q ss_pred cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
.++.+||..|+|. |..+..+++.. +.++++++.+++..+.+++ .+...-+.....+.. ..+. ......+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~---~~~~-~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLE---EELR-LTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHH---HHHH-HhcCCCC
Confidence 5678999999885 66677777765 4789999998876665543 232211111111121 1111 1114679
Q ss_pred eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
|+++...... .....+.+. |+++|.++.-
T Consensus 203 d~vi~~~~~~---~~~~~~~~~---l~~~G~~v~~ 231 (271)
T cd05188 203 DVVIDAVGGP---ETLAQALRL---LRPGGRIVVV 231 (271)
T ss_pred CEEEECCCCH---HHHHHHHHh---cccCCEEEEE
Confidence 9998654421 235566677 9999988863
No 323
>PTZ00357 methyltransferase; Provisional
Probab=92.49 E-value=0.67 Score=45.79 Aligned_cols=103 Identities=11% Similarity=0.079 Sum_probs=64.1
Q ss_pred EEEEEcccccHHHHHHHHHC---CCCCEEEEEecCccHHHHHHHHHHH-hCC-------CCcEEEEEcchhhHHHHHHhC
Q 023411 122 RCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYER-AGV-------SHKVKIKHGLAADSLKALILN 190 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~-~g~-------~~~v~~~~gd~~~~l~~l~~~ 190 (282)
.|+-+|+|.|-..-...++. ....+|++||.++..+.....+... ... .++|+++..|..++.......
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58889999999865554443 3346899999998765555444321 122 346999999998863211000
Q ss_pred -----CCCCceeEEEEc-----CCccccHHHHHHHHHhhcCCCC----CcE
Q 023411 191 -----GEASSYDFAFVD-----AEKRMYQEYFELLLQLLLQIRV----GGI 227 (282)
Q Consensus 191 -----~~~~~fDlV~id-----~~~~~~~~~l~~~~~~~~~Lkp----gG~ 227 (282)
..-+++|+|+.. ++.+-.++=++-+.+. ||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrf---LKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQ---LEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHh---hhhhcccccc
Confidence 001479999853 3344445556666666 765 665
No 324
>PLN02740 Alcohol dehydrogenase-like
Probab=92.33 E-value=1.8 Score=39.95 Aligned_cols=101 Identities=14% Similarity=0.219 Sum_probs=58.8
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEE--cchhhHHHHHHhC
Q 023411 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILN 190 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~l~~~ 190 (282)
....++++||-+|+| .|..+..+++.. +. +|+++|.+++.++.+++ .|...-+.... .+..+.+..+.
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-- 265 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT-- 265 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh--
Confidence 445678899999875 244555666665 35 69999999988777754 34432122111 11222222221
Q ss_pred CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEe
Q 023411 191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVID 231 (282)
Q Consensus 191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~d 231 (282)
.+.+|+||-..... ..+.....+ +++| |.+++=
T Consensus 266 --~~g~dvvid~~G~~---~~~~~a~~~---~~~g~G~~v~~ 299 (381)
T PLN02740 266 --GGGVDYSFECAGNV---EVLREAFLS---THDGWGLTVLL 299 (381)
T ss_pred --CCCCCEEEECCCCh---HHHHHHHHh---hhcCCCEEEEE
Confidence 23699887544422 345566667 8886 877663
No 325
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.26 E-value=0.95 Score=35.05 Aligned_cols=87 Identities=10% Similarity=-0.005 Sum_probs=46.2
Q ss_pred HHHHhhcCCCEEEEEcccccHHH-HHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411 112 AMLVQILGAQRCIEVGVYTGYSS-LAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (282)
Q Consensus 112 ~~l~~~~~~~~VLEIG~G~G~~t-~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~ 190 (282)
..+++.....+|+|+|.|.=.-. ..|.++ +..|+++|+++. ... ..+.++.-|..+--..+
T Consensus 6 ~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~i--- 67 (127)
T PF03686_consen 6 EYIARLNNYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEI--- 67 (127)
T ss_dssp HHHHHHS-SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S----------------STTEE---SSS--HHH---
T ss_pred HHHHHhCCCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc-------ccc-----cCcceeeecccCCCHHH---
Confidence 34455556679999999875543 344443 479999999987 111 23677888877633233
Q ss_pred CCCCceeEEEEcCCccccHHHHHHHHHh
Q 023411 191 GEASSYDFAFVDAEKRMYQEYFELLLQL 218 (282)
Q Consensus 191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~ 218 (282)
=...|+|+.-.++.+....+-.+.+.
T Consensus 68 --Y~~a~lIYSiRPP~El~~~il~lA~~ 93 (127)
T PF03686_consen 68 --YEGADLIYSIRPPPELQPPILELAKK 93 (127)
T ss_dssp --HTTEEEEEEES--TTSHHHHHHHHHH
T ss_pred --hcCCcEEEEeCCChHHhHHHHHHHHH
Confidence 25789999877766666555555543
No 326
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=92.25 E-value=1.7 Score=37.84 Aligned_cols=110 Identities=19% Similarity=0.259 Sum_probs=55.8
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (282)
Q Consensus 109 ~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~ 188 (282)
.++..+...++... +..-.|+=.++..++ .+.-+++.+|+.++-.+..++++.. ..++++.+.|..+.+..+.
T Consensus 48 ~yl~~v~~~n~~~~-l~~YPGSP~ia~~ll---R~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~all 120 (245)
T PF04378_consen 48 PYLDAVRALNPDGE-LRFYPGSPAIAARLL---REQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKALL 120 (245)
T ss_dssp HHHHHHHHHSSSSS---EEE-HHHHHHHHS----TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH-
T ss_pred HHHHHHHHhccCCC-cCcCCCCHHHHHHhC---CccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhhC
Confidence 34444433333323 445555544544444 3457999999999999888888764 3479999999998766654
Q ss_pred hCCCCCceeEEEEcCCcc---ccHHHHHHHHHhhcCCC--CCcEEEE
Q 023411 189 LNGEASSYDFAFVDAEKR---MYQEYFELLLQLLLQIR--VGGIIVI 230 (282)
Q Consensus 189 ~~~~~~~fDlV~id~~~~---~~~~~l~~~~~~~~~Lk--pgG~lv~ 230 (282)
.. ..+=-+|+||.+.+ ++....+.+... ++ +.|++++
T Consensus 121 PP--~~rRglVLIDPpYE~~~dy~~v~~~l~~a---~kR~~~G~~~i 162 (245)
T PF04378_consen 121 PP--PERRGLVLIDPPYEQKDDYQRVVDALAKA---LKRWPTGVYAI 162 (245)
T ss_dssp S---TTS-EEEEE-----STTHHHHHHHHHHHH---HHH-TTSEEEE
T ss_pred CC--CCCCeEEEECCCCCCchHHHHHHHHHHHH---HHhcCCcEEEE
Confidence 32 24456999999744 444444444333 22 5676655
No 327
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=92.24 E-value=2.1 Score=38.11 Aligned_cols=100 Identities=15% Similarity=0.179 Sum_probs=60.9
Q ss_pred HHhhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC
Q 023411 114 LVQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (282)
Q Consensus 114 l~~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~ 191 (282)
.....++.+||=.|. +.|..+..+++.. +.++++++.+++..+.+++ .|...-+.....+..+.+... .
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~---~ 208 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEA---A 208 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHH---C
Confidence 344567788988874 4666777788876 4789999988876666544 354321221112222222222 1
Q ss_pred CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
...+|+||-... . ..++...++ |+++|.++.
T Consensus 209 -~~gvd~vld~~g-~---~~~~~~~~~---l~~~G~iv~ 239 (329)
T cd08294 209 -PDGIDCYFDNVG-G---EFSSTVLSH---MNDFGRVAV 239 (329)
T ss_pred -CCCcEEEEECCC-H---HHHHHHHHh---hccCCEEEE
Confidence 256898884322 2 345677777 999999875
No 328
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.12 E-value=0.71 Score=41.69 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=60.2
Q ss_pred EEEEcccccHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411 123 CIEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (282)
Q Consensus 123 VLEIG~G~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i 201 (282)
|+|+.||.|..+.-+-++ +.+ +.++|+++.+.+.-+.|+. + .++++|..+..... -..+|+++.
T Consensus 1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~-----~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD-----IPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh-----CCCcCEEEe
Confidence 689999999999888764 344 6789999988877776653 2 44567877654321 245898875
Q ss_pred cCC------------ccc-cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 202 DAE------------KRM-YQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 202 d~~------------~~~-~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
..+ ..+ ....+....++...++|. +++++||-
T Consensus 66 g~PCq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~ 110 (315)
T TIGR00675 66 GFPCQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK-FFLLENVK 110 (315)
T ss_pred cCCCcccchhcccCCCCCchhhHHHHHHHHHhhcCCC-EEEeeccH
Confidence 432 011 112222333332226775 88999984
No 329
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.82 E-value=3.1 Score=37.19 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=61.1
Q ss_pred HHhhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhC
Q 023411 114 LVQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILN 190 (282)
Q Consensus 114 l~~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~ 190 (282)
.....++.+||=.|. +.|..+..+++.. +.++++++.+++..+.+++ .|.+.-+..... +..+.....
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~--- 203 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA--- 203 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh---
Confidence 345567889988884 4677777888875 4789999988876665543 454321221111 122222222
Q ss_pred CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
. .+.+|+||- .... ..+....++ |+++|.++.-
T Consensus 204 ~-~~gvdvv~d-~~G~---~~~~~~~~~---l~~~G~iv~~ 236 (325)
T TIGR02825 204 S-PDGYDCYFD-NVGG---EFSNTVIGQ---MKKFGRIAIC 236 (325)
T ss_pred C-CCCeEEEEE-CCCH---HHHHHHHHH---hCcCcEEEEe
Confidence 1 346998884 3322 235677788 9999999863
No 330
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=91.80 E-value=2.1 Score=38.45 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=57.1
Q ss_pred CEEEEEcc--cccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 121 QRCIEVGV--YTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 121 ~~VLEIG~--G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
++||=.|+ |.|..++.+++.. +. +|++++.+++..+.+++. .|.+.-+.....+..+.+..+ . ...+|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~---~-~~gvd 226 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLREL---C-PEGVD 226 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHH---C-CCCce
Confidence 78988885 4677778888876 45 799999888766555443 354321221112222222222 1 25799
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
+||- ..... .+....++ |+++|.++.
T Consensus 227 ~vid-~~g~~---~~~~~~~~---l~~~G~iv~ 252 (345)
T cd08293 227 VYFD-NVGGE---ISDTVISQ---MNENSHIIL 252 (345)
T ss_pred EEEE-CCCcH---HHHHHHHH---hccCCEEEE
Confidence 9884 33221 24667777 999998885
No 331
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.75 E-value=1.9 Score=38.64 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=69.6
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC--CCcEEEEEcchh-h-HHHHHHhCC-CCC
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAA-D-SLKALILNG-EAS 194 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~v~~~~gd~~-~-~l~~l~~~~-~~~ 194 (282)
...|+-+|||- .|...---.+++.+|+-+|. |+.++.=++.+...+. ..+++++..|.. + +...+.+.| +..
T Consensus 93 ~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEecccc--ccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 67899999964 44332222343578888887 7888887788887663 246899999987 3 445555433 223
Q ss_pred ceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 195 SYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 195 ~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
.-=++++.+. .+....++..+..+ ..||..++++-.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~---~~~gS~~~~~~~ 210 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAAL---SAPGSRVAFDYS 210 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHh---CCCCceEEEecc
Confidence 3345555554 34456678888887 777777776643
No 332
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=91.74 E-value=2.9 Score=37.61 Aligned_cols=101 Identities=13% Similarity=0.126 Sum_probs=61.7
Q ss_pred HHhhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhC
Q 023411 114 LVQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILN 190 (282)
Q Consensus 114 l~~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~ 190 (282)
.....++++||=.|+ |.|..+..+++.. +.++++++.+++..+.+++. .|...-+..... +..+.+...
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~--- 217 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRY--- 217 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHh---
Confidence 344567889998886 4666777788876 47899998888766665542 344321221111 222222222
Q ss_pred CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
. ...+|+||-... . ..+....++ |+++|.++.
T Consensus 218 ~-~~gvd~v~d~~g-~---~~~~~~~~~---l~~~G~iv~ 249 (338)
T cd08295 218 F-PNGIDIYFDNVG-G---KMLDAVLLN---MNLHGRIAA 249 (338)
T ss_pred C-CCCcEEEEECCC-H---HHHHHHHHH---hccCcEEEE
Confidence 1 257999884332 2 346677787 999999875
No 333
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.70 E-value=1.2 Score=40.43 Aligned_cols=97 Identities=20% Similarity=0.185 Sum_probs=64.1
Q ss_pred CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC-ceeEE
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS-SYDFA 199 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~-~fDlV 199 (282)
.+++|+-||.|...+-+..+. ---+.++|+++.+++.-+.++.. ..+++.|..+...... .. .+|++
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~----~~~~~Dvl 71 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL----RKSDVDVL 71 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc----cccCCCEE
Confidence 489999999999998777653 13589999999988777766642 4566667665433221 12 78888
Q ss_pred EEcCCc--------c---------ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 200 FVDAEK--------R---------MYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 200 ~id~~~--------~---------~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+-..+. . -+..+.+.+.. ++| -++|++||-
T Consensus 72 igGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~----~~P-~~fv~ENV~ 118 (328)
T COG0270 72 IGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQ----LRP-KFFVLENVK 118 (328)
T ss_pred EeCCCCcchhhcCcccCCcCccceeeHHHHHHHHh----hCC-CEEEEecCc
Confidence 754331 1 02334444443 688 799999984
No 334
>PLN02827 Alcohol dehydrogenase-like
Probab=91.64 E-value=2.2 Score=39.39 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=57.8
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE--cchhhHHHHHHhCC
Q 023411 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNG 191 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~l~~~~ 191 (282)
....++++||-.|+| .|..++.+++..+ ...|+++|.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~--- 260 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT--- 260 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh---
Confidence 345678899988874 2444555666653 2368899988887666543 35432111111 11222222221
Q ss_pred CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEe
Q 023411 192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVID 231 (282)
Q Consensus 192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~d 231 (282)
.+.+|+||-..... ..+....++ +++| |.+++-
T Consensus 261 -~~g~d~vid~~G~~---~~~~~~l~~---l~~g~G~iv~~ 294 (378)
T PLN02827 261 -GGGADYSFECVGDT---GIATTALQS---CSDGWGLTVTL 294 (378)
T ss_pred -CCCCCEEEECCCCh---HHHHHHHHh---hccCCCEEEEE
Confidence 23689888543322 235566777 8998 998763
No 335
>PRK08114 cystathionine beta-lyase; Provisional
Probab=91.61 E-value=4.8 Score=37.58 Aligned_cols=133 Identities=13% Similarity=0.167 Sum_probs=77.9
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEe-cCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACE-RDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (282)
Q Consensus 103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD-~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (282)
-+|....+-..++..-.+...+-+.+|++.+...+...+.++.+|+..+ .........++.+++.|+. ++++...-.
T Consensus 60 ~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~--v~~vd~~d~ 137 (395)
T PRK08114 60 GTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVT--TTWFDPLIG 137 (395)
T ss_pred CChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcE--EEEECCCCH
Confidence 4566666666777777777888899988888766665566567777654 2234445555666666653 565543222
Q ss_pred hHHHHHHhCCCCCceeEEEEcCCccc--cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccC
Q 023411 182 DSLKALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVAD 241 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~~~~--~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~ 241 (282)
+.+.... ...-.+|++...... ....++.+.++++-..+|-.+++||..-.+...+
T Consensus 138 ~~l~~~l----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~ 195 (395)
T PRK08114 138 ADIAKLI----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFK 195 (395)
T ss_pred HHHHHhc----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccC
Confidence 3333332 234578998765221 1223445555411123456889999976665433
No 336
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=91.60 E-value=0.32 Score=43.58 Aligned_cols=79 Identities=23% Similarity=0.280 Sum_probs=55.0
Q ss_pred EEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH-HHHHHhCCCCCceeEEEE
Q 023411 124 IEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNGEASSYDFAFV 201 (282)
Q Consensus 124 LEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~-l~~l~~~~~~~~fDlV~i 201 (282)
+|||+ |.+.++.+.... .+-..+++|+++.....|++++.++++++++.+++....+. +.+......+..||++.+
T Consensus 107 iDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 107 IDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 67775 667776655432 23468999999999999999999999999999988765432 232221111346888887
Q ss_pred cCC
Q 023411 202 DAE 204 (282)
Q Consensus 202 d~~ 204 (282)
+.+
T Consensus 185 NPP 187 (419)
T KOG2912|consen 185 NPP 187 (419)
T ss_pred CCc
Confidence 765
No 337
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.54 E-value=2.1 Score=38.72 Aligned_cols=103 Identities=15% Similarity=0.217 Sum_probs=58.6
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
...++++||-.|+| .|..+..+++... .+ |++++.+++..+.+++ .|...-+.....+ .+.+.... ..
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G--~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~---~~ 226 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALG--AKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVL---RE 226 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHh---cC
Confidence 34567899988875 3445566676653 54 7899988887766543 3432111111112 12122221 13
Q ss_pred CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
..+|.+++|..-. ...+....++ |++||.+++=..
T Consensus 227 ~~~d~~v~d~~G~--~~~~~~~~~~---l~~~G~iv~~G~ 261 (347)
T PRK10309 227 LRFDQLILETAGV--PQTVELAIEI---AGPRAQLALVGT 261 (347)
T ss_pred CCCCeEEEECCCC--HHHHHHHHHH---hhcCCEEEEEcc
Confidence 4688555665532 2346667787 999999887543
No 338
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.53 E-value=4.2 Score=33.66 Aligned_cols=102 Identities=16% Similarity=0.284 Sum_probs=53.5
Q ss_pred EEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHH------------HHHhCCCCcEEEEEcchhhHHHHHH
Q 023411 122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKY------------YERAGVSHKVKIKHGLAADSLKALI 188 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~------------~~~~g~~~~v~~~~gd~~~~l~~l~ 188 (282)
+|--||.| +.++.+|..+.. +.+|+++|++++.++..++- +++.....+.++. .|..+..
T Consensus 2 ~I~ViGlG--yvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---- 74 (185)
T PF03721_consen 2 KIAVIGLG--YVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---- 74 (185)
T ss_dssp EEEEE--S--TTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred EEEEECCC--cchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence 45566664 444444443322 46999999999876655421 1111111233332 1222211
Q ss_pred hCCCCCceeEEEEcCC----------ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 189 LNGEASSYDFAFVDAE----------KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 189 ~~~~~~~fDlV~id~~----------~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
...|++|+.-+ ........+.+.+. ++++.++|+.....+|.
T Consensus 75 -----~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~---l~~~~lvV~~STvppGt 126 (185)
T PF03721_consen 75 -----KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPV---LRPGDLVVIESTVPPGT 126 (185)
T ss_dssp -----HH-SEEEE----EBETTTSBETHHHHHHHHHHHHH---HCSCEEEEESSSSSTTH
T ss_pred -----hccceEEEecCCCccccCCccHHHHHHHHHHHHHH---HhhcceEEEccEEEEee
Confidence 35688887533 11234456666666 99999999999999997
No 339
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=91.51 E-value=2.9 Score=37.92 Aligned_cols=102 Identities=17% Similarity=0.233 Sum_probs=64.0
Q ss_pred HHhhcCCCEEEEEccc--ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC
Q 023411 114 LVQILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (282)
Q Consensus 114 l~~~~~~~~VLEIG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~ 191 (282)
..+..++++||-.|.. -|.+++.||++.. +.++++--+++-.+ .++..|-+.-+.+...|..+...++.
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t--- 207 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELT--- 207 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHc---
Confidence 3445678899998843 5667788998874 46666666665433 44455655445556666555554442
Q ss_pred CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
....+|+||-..... .+...... |+++|.++.=
T Consensus 208 ~g~gvDvv~D~vG~~----~~~~~l~~---l~~~G~lv~i 240 (326)
T COG0604 208 GGKGVDVVLDTVGGD----TFAASLAA---LAPGGRLVSI 240 (326)
T ss_pred CCCCceEEEECCCHH----HHHHHHHH---hccCCEEEEE
Confidence 124799998654433 34456666 8999988773
No 340
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=91.36 E-value=0.13 Score=47.61 Aligned_cols=65 Identities=18% Similarity=0.054 Sum_probs=57.2
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCc-EEEEEcchhhHHH
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLK 185 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~-v~~~~gd~~~~l~ 185 (282)
+++..|-|+.||.|-+++-++.. +++|++-|.+++++++.+.+++.+.+.+. +.++..|+.+++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 46778999999999999888864 58999999999999999999999888766 8999999887763
No 341
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=91.06 E-value=3.7 Score=37.65 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=59.1
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEE--cchhhHHHHHHhC
Q 023411 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILN 190 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~l~~~ 190 (282)
....++++||-+|+| .|..++.+|+..+ + +|+++|.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G--~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-- 252 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAK--ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT-- 252 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh--
Confidence 345677899988875 3555666777663 5 79999999987777654 34432121111 11112222221
Q ss_pred CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeC
Q 023411 191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDN 232 (282)
Q Consensus 191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd 232 (282)
.+.+|+||-.... ...+....++ +++| |.++.=.
T Consensus 253 --~~g~d~vid~~G~---~~~~~~~~~~---~~~~~G~~v~~g 287 (368)
T TIGR02818 253 --DGGVDYSFECIGN---VNVMRAALEC---CHKGWGESIIIG 287 (368)
T ss_pred --CCCCCEEEECCCC---HHHHHHHHHH---hhcCCCeEEEEe
Confidence 2368988754332 2345566677 8886 8776533
No 342
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=91.04 E-value=9.9 Score=33.11 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=78.1
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
+......++..+-..+++.. |..-+|+-..+..+.+. .-++..+|+.|+-....+.++. -..++++.++|...
T Consensus 73 lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~ 145 (279)
T COG2961 73 LPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFL 145 (279)
T ss_pred chHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHH
Confidence 44555566666666666655 77788877766666653 4689999999999988888887 34579999999877
Q ss_pred HHHHHHhCCCCCceeEEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEE
Q 023411 183 SLKALILNGEASSYDFAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 183 ~l~~l~~~~~~~~fDlV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
.+...... .++=-+|+||.+.+. |....+.+.+..+-- ++|+..+
T Consensus 146 ~l~a~LPP--~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf-~~g~yai 193 (279)
T COG2961 146 ALKAHLPP--KERRGLVLIDPPFELKDEYQRVVEALAEAYKRF-ATGTYAI 193 (279)
T ss_pred HHhhhCCC--CCcceEEEeCCCcccccHHHHHHHHHHHHHHhh-cCceEEE
Confidence 65443322 345579999998543 444444444331112 5566555
No 343
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.97 E-value=2.8 Score=37.63 Aligned_cols=100 Identities=20% Similarity=0.275 Sum_probs=57.1
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
...++++||=+|+| .|..+..+++..+ .+ |++++.+++..+.+++ .|...-+.....+ .+.+..+. ..
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~---~~ 229 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT---SG 229 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh---CC
Confidence 44567899888864 2444555666653 56 9999998887666543 3443211211112 12222221 12
Q ss_pred CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
..+|+||-..... ..+....++ |+++|.+++=
T Consensus 230 ~~~d~vid~~g~~---~~~~~~~~~---l~~~G~~v~~ 261 (339)
T cd08239 230 AGADVAIECSGNT---AARRLALEA---VRPWGRLVLV 261 (339)
T ss_pred CCCCEEEECCCCH---HHHHHHHHH---hhcCCEEEEE
Confidence 4799988544322 234556677 9999988863
No 344
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=90.83 E-value=2.2 Score=37.72 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=58.7
Q ss_pred CCCEEEEEcccccHHHHHH-HHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 119 GAQRCIEVGVYTGYSSLAI-ALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~l-a~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.++.|+-+|-- -..++.+ +..+| .++..+|+++..+...++..++.|+.+ ++.+.-|....+|+-. ..+||
T Consensus 152 ~gK~I~vvGDD-DLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~----~~kFD 223 (354)
T COG1568 152 EGKEIFVVGDD-DLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDL----KRKFD 223 (354)
T ss_pred CCCeEEEEcCc-hhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHH----HhhCC
Confidence 56789999943 3333333 33444 589999999999999999999999875 8888888877655433 58999
Q ss_pred EEEEcCC
Q 023411 198 FAFVDAE 204 (282)
Q Consensus 198 lV~id~~ 204 (282)
+++.|++
T Consensus 224 vfiTDPp 230 (354)
T COG1568 224 VFITDPP 230 (354)
T ss_pred eeecCch
Confidence 9998877
No 345
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.77 E-value=1.6 Score=40.38 Aligned_cols=96 Identities=13% Similarity=0.101 Sum_probs=53.1
Q ss_pred CCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 119 ~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
++.+|+=+|+| .|..+...+..+ +.+|+.+|.+++..+.+.+.+ +. .+.....+. +.+... -..+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~-~~l~~~-----l~~aD 232 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNA-YEIEDA-----VKRAD 232 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCH-HHHHHH-----HccCC
Confidence 45679999987 455566666665 368999999987655443332 11 122211222 223333 25789
Q ss_pred EEEEcCCc--cccHH-HHHHHHHhhcCCCCCcEEEE
Q 023411 198 FAFVDAEK--RMYQE-YFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 198 lV~id~~~--~~~~~-~l~~~~~~~~~LkpgG~lv~ 230 (282)
+||..... ...+. .-+...+. ++||++++-
T Consensus 233 vVI~a~~~~g~~~p~lit~~~l~~---mk~g~vIvD 265 (370)
T TIGR00518 233 LLIGAVLIPGAKAPKLVSNSLVAQ---MKPGAVIVD 265 (370)
T ss_pred EEEEccccCCCCCCcCcCHHHHhc---CCCCCEEEE
Confidence 99976421 11111 12444455 788876554
No 346
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=90.65 E-value=7.1 Score=31.70 Aligned_cols=111 Identities=18% Similarity=0.107 Sum_probs=62.4
Q ss_pred ccCHHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411 102 QVSPDQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (282)
Q Consensus 102 ~~~~~~~~ll~~l~~~--~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd 179 (282)
..+.+....+...+.. .+..+|+=|||=+-+..+.- ...++.+++..|++.... ..+ .. .|+.-|
T Consensus 6 wYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~--------~~~--~~-~F~fyD 72 (162)
T PF10237_consen 6 WYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFE--------QFG--GD-EFVFYD 72 (162)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHH--------hcC--Cc-ceEECC
Confidence 3445555555555443 35578999998665554433 122357899999997643 222 12 344444
Q ss_pred hhhHHHHHHhCCCCCceeEEEEcCCcc--c-cHHHHHHHHHhhcCCCCCcEEEE
Q 023411 180 AADSLKALILNGEASSYDFAFVDAEKR--M-YQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 180 ~~~~l~~l~~~~~~~~fDlV~id~~~~--~-~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
..+. ..++..- .++||+|++|++-- . .......+.-+ +++++.+++
T Consensus 73 ~~~p-~~~~~~l-~~~~d~vv~DPPFl~~ec~~k~a~ti~~L---~k~~~kii~ 121 (162)
T PF10237_consen 73 YNEP-EELPEEL-KGKFDVVVIDPPFLSEECLTKTAETIRLL---LKPGGKIIL 121 (162)
T ss_pred CCCh-hhhhhhc-CCCceEEEECCCCCCHHHHHHHHHHHHHH---hCccceEEE
Confidence 4321 1121111 58999999999842 2 22334555555 788777765
No 347
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.65 E-value=1.7 Score=39.51 Aligned_cols=95 Identities=11% Similarity=0.128 Sum_probs=56.4
Q ss_pred cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEec---CccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACER---DARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~---s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
.++.+||-+|+|. |..+..+++.. +.+|++++. +++..+.++ ..|... +.....+..+ .. . .
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~----~~Ga~~-v~~~~~~~~~----~~--~-~ 236 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVE----ELGATY-VNSSKTPVAE----VK--L-V 236 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHH----HcCCEE-ecCCccchhh----hh--h-c
Confidence 4677999888763 55667777776 468999987 455554443 344321 2111111111 10 1 3
Q ss_pred CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
+.+|+||-..... ..+....++ |++||.+++=.
T Consensus 237 ~~~d~vid~~g~~---~~~~~~~~~---l~~~G~~v~~G 269 (355)
T cd08230 237 GEFDLIIEATGVP---PLAFEALPA---LAPNGVVILFG 269 (355)
T ss_pred CCCCEEEECcCCH---HHHHHHHHH---ccCCcEEEEEe
Confidence 5789888655422 246677787 99999887643
No 348
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=90.61 E-value=1.1 Score=42.36 Aligned_cols=96 Identities=7% Similarity=0.041 Sum_probs=61.5
Q ss_pred EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i 201 (282)
+++.+|||.--.+..+-... --.++.+|+|+..++....... --.....+...|.....- ++++||+|+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~~~d~~~l~f------edESFdiVId 120 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNA--KERPEMQMVEMDMDQLVF------EDESFDIVID 120 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccc--cCCcceEEEEecchhccC------CCcceeEEEe
Confidence 89999999876666555432 2469999999988766655432 122346777777754321 1688998874
Q ss_pred cCC-------------ccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 202 DAE-------------KRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 202 d~~-------------~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
-+. ..+....+..+.++ +++||..+.
T Consensus 121 kGtlDal~~de~a~~~~~~v~~~~~eVsrv---l~~~gk~~s 159 (482)
T KOG2352|consen 121 KGTLDALFEDEDALLNTAHVSNMLDEVSRV---LAPGGKYIS 159 (482)
T ss_pred cCccccccCCchhhhhhHHhhHHHhhHHHH---hccCCEEEE
Confidence 222 11233455666666 999997543
No 349
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=90.50 E-value=5 Score=37.39 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=77.7
Q ss_pred ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEec-CccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER-DARSLEVAKKYYERAGVSHKVKIKHGLA 180 (282)
Q Consensus 102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~-s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (282)
.-+|....+-..++.+..+..++=..+|.+.++..+...+.++.+++..+. -.......++.+...|+. ++++..+-
T Consensus 52 ~gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~--v~~~d~~d 129 (386)
T PF01053_consen 52 YGNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVE--VTFVDPTD 129 (386)
T ss_dssp TC-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSE--EEEESTTS
T ss_pred cccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcE--EEEeCchh
Confidence 346666777777777777888888999999887777777776778877763 334455566666666653 56665433
Q ss_pred hhHHHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCCC--cEEEEeCCCCCC
Q 023411 181 ADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRVG--GIIVIDNVLWHG 237 (282)
Q Consensus 181 ~~~l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~Lkpg--G~lv~dd~~~~g 237 (282)
.+.+.... ....++||+..+ +......++.+.++ .+.. -.+++||.+-..
T Consensus 130 ~~~l~~~l----~~~t~~v~~EspsNP~l~v~Dl~~i~~~---a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 130 LEALEAAL----RPNTKLVFLESPSNPTLEVPDLEAIAKL---AKEHGDILVVVDNTFATP 183 (386)
T ss_dssp HHHHHHHH----CTTEEEEEEESSBTTTTB---HHHHHHH---HHHTTT-EEEEECTTTHT
T ss_pred HHHHHhhc----cccceEEEEEcCCCcccccccHHHHHHH---HHHhCCceEEeeccccce
Confidence 34444333 468899999765 22233345555555 4444 477888886333
No 350
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=90.43 E-value=4 Score=36.76 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=57.7
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
....++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++ .|...-+. ..+. . .
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~vi~-----~~~~-~-------~ 221 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAASAGG-----AYDT-P-------P 221 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCceecc-----cccc-C-------c
Confidence 345677899988864 344456667665 4689999999887665544 45432111 1110 0 2
Q ss_pred CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
+.+|+++...... ..+....+. |++||.+++=..
T Consensus 222 ~~~d~~i~~~~~~---~~~~~~~~~---l~~~G~~v~~G~ 255 (329)
T TIGR02822 222 EPLDAAILFAPAG---GLVPPALEA---LDRGGVLAVAGI 255 (329)
T ss_pred ccceEEEECCCcH---HHHHHHHHh---hCCCcEEEEEec
Confidence 4678766433322 346677777 999999987443
No 351
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.31 E-value=4.2 Score=30.97 Aligned_cols=86 Identities=9% Similarity=0.026 Sum_probs=53.8
Q ss_pred HHHHhhcCCCEEEEEcccccHH-HHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411 112 AMLVQILGAQRCIEVGVYTGYS-SLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (282)
Q Consensus 112 ~~l~~~~~~~~VLEIG~G~G~~-t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~ 190 (282)
..+++.....+|+|+|.|.=.- +..++++ +..++++|+++.. ++ .-++++..|..+---.+
T Consensus 6 ~~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~~----------a~--~g~~~v~DDitnP~~~i--- 67 (129)
T COG1255 6 EYIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEKT----------AP--EGLRFVVDDITNPNISI--- 67 (129)
T ss_pred HHHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEeccccc----------Cc--ccceEEEccCCCccHHH---
Confidence 3455666777999999875332 3334442 4789999999861 11 23788888887632222
Q ss_pred CCCCceeEEEEcCCccccHHHHHHHHH
Q 023411 191 GEASSYDFAFVDAEKRMYQEYFELLLQ 217 (282)
Q Consensus 191 ~~~~~fDlV~id~~~~~~~~~l~~~~~ 217 (282)
=...|+|+.--++.+...++-.+.+
T Consensus 68 --Y~~A~lIYSiRpppEl~~~ildva~ 92 (129)
T COG1255 68 --YEGADLIYSIRPPPELQSAILDVAK 92 (129)
T ss_pred --hhCccceeecCCCHHHHHHHHHHHH
Confidence 2567899987665555544444443
No 352
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.23 E-value=5.2 Score=37.06 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=81.8
Q ss_pred hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHH-------HHHhCC-CCcEEEEEcchhhH--HH
Q 023411 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY-------YERAGV-SHKVKIKHGLAADS--LK 185 (282)
Q Consensus 116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~-------~~~~g~-~~~v~~~~gd~~~~--l~ 185 (282)
...+.+...|+|+|.|......+.... ...=+|+|+.+...+.+..+ .+..|- .+.++.+++++.+. ..
T Consensus 189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~ 267 (419)
T KOG3924|consen 189 KLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT 267 (419)
T ss_pred ccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence 345777899999999999888877654 34568888877665555333 333454 35688999988653 22
Q ss_pred HHHhCCCCCceeEEEEcCCccc--cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHH
Q 023411 186 ALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKN 258 (282)
Q Consensus 186 ~l~~~~~~~~fDlV~id~~~~~--~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~ 258 (282)
.+ ....++||++...-+ ..--.+.+..- +++|..++-.+.+.+.. ......-..+.+|...
T Consensus 268 eI-----~~eatvi~vNN~~Fdp~L~lr~~eil~~---ck~gtrIiS~~~L~~r~----rs~es~~~~~~df~~i 330 (419)
T KOG3924|consen 268 EI-----QTEATVIFVNNVAFDPELKLRSKEILQK---CKDGTRIISSKPLVPRP----RSQESTSRRVSDFVAI 330 (419)
T ss_pred HH-----hhcceEEEEecccCCHHHHHhhHHHHhh---CCCcceEeccccccccc----cchhHHHHHHHHHHhh
Confidence 33 356789998876322 22223355555 89999999888776631 1122233456666543
No 353
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.14 E-value=4.4 Score=36.61 Aligned_cols=105 Identities=22% Similarity=0.296 Sum_probs=61.2
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
....++++||-.|+| .|..+..+++..+ ...+++++.+++..+.+++ .|...-+.....+..+....+. ..
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~---~~ 233 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT---GG 233 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh---CC
Confidence 345567888888765 3555666777664 2369999998877666553 3443212221122222222221 13
Q ss_pred CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
..+|+++-..... ..+..+.++ |+++|.++.=++
T Consensus 234 ~~~d~vld~~g~~---~~~~~~~~~---l~~~G~~v~~g~ 267 (351)
T cd08285 234 KGVDAVIIAGGGQ---DTFEQALKV---LKPGGTISNVNY 267 (351)
T ss_pred CCCcEEEECCCCH---HHHHHHHHH---hhcCCEEEEecc
Confidence 4699888544322 346677787 999998886443
No 354
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.06 E-value=5 Score=35.13 Aligned_cols=100 Identities=21% Similarity=0.238 Sum_probs=58.0
Q ss_pred cCCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 118 LGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 118 ~~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
.++++||-+|+| .|..+..+++.. +. +|+++|.+++..+.+++ .|...-+.. .+..+....+. ....
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~~~~~~~~---~~~g 187 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAA--GAARVVAADPSPDRRELALS----FGATALAEP--EVLAERQGGLQ---NGRG 187 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----cCCcEecCc--hhhHHHHHHHh---CCCC
Confidence 467789988875 344556667665 34 48999998887766654 343211111 11111111111 1346
Q ss_pred eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+|+||-.... ...++.+.++ ++++|.++.=...
T Consensus 188 ~d~vid~~G~---~~~~~~~~~~---l~~~G~iv~~G~~ 220 (280)
T TIGR03366 188 VDVALEFSGA---TAAVRACLES---LDVGGTAVLAGSV 220 (280)
T ss_pred CCEEEECCCC---hHHHHHHHHH---hcCCCEEEEeccC
Confidence 8998854332 2346667788 9999999875543
No 355
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=89.80 E-value=5.2 Score=36.58 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=59.4
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc--chhhHHHHHHhC
Q 023411 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILN 190 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~l~~~ 190 (282)
....++++||-+|+| .|..+..+++..+ . +|+++|.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G--~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~-- 253 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAG--ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT-- 253 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh--
Confidence 345678899988864 3445566677653 5 79999999987776643 344321211111 1222222221
Q ss_pred CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeCC
Q 023411 191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDNV 233 (282)
Q Consensus 191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd~ 233 (282)
.+.+|+||-.... ...+....++ ++++ |.++.-..
T Consensus 254 --~~g~d~vid~~g~---~~~~~~a~~~---l~~~~G~~v~~g~ 289 (368)
T cd08300 254 --DGGVDYTFECIGN---VKVMRAALEA---CHKGWGTSVIIGV 289 (368)
T ss_pred --CCCCcEEEECCCC---hHHHHHHHHh---hccCCCeEEEEcc
Confidence 2479998854332 2345666777 8887 87776433
No 356
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=89.73 E-value=3.7 Score=37.35 Aligned_cols=110 Identities=24% Similarity=0.302 Sum_probs=67.7
Q ss_pred HHhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhCC
Q 023411 114 LVQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNG 191 (282)
Q Consensus 114 l~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~~ 191 (282)
-++..++.+|.-+||| -|..++.-|.... ..++++||++++-+++|++. |..+-++-... |..+.+..+.
T Consensus 180 ta~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~f----GAT~~vn~~~~~~vv~~i~~~T--- 251 (366)
T COG1062 180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKF----GATHFVNPKEVDDVVEAIVELT--- 251 (366)
T ss_pred cccCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhc----CCceeecchhhhhHHHHHHHhc---
Confidence 3455678899999998 4666666666554 57999999999998887763 33322222211 3444444442
Q ss_pred CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
++..|.+|--.... ..+++.... +.++|..++-.+--.|.
T Consensus 252 -~gG~d~~~e~~G~~---~~~~~al~~---~~~~G~~v~iGv~~~~~ 291 (366)
T COG1062 252 -DGGADYAFECVGNV---EVMRQALEA---THRGGTSVIIGVAGAGQ 291 (366)
T ss_pred -CCCCCEEEEccCCH---HHHHHHHHH---HhcCCeEEEEecCCCCc
Confidence 34778887543322 245556666 67788877755544443
No 357
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=89.61 E-value=0.28 Score=37.03 Aligned_cols=40 Identities=23% Similarity=0.589 Sum_probs=27.5
Q ss_pred ceeEEEEcCC---------ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411 195 SYDFAFVDAE---------KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG 237 (282)
Q Consensus 195 ~fDlV~id~~---------~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g 237 (282)
+||+|+|-.. .+....+|+.+..+ |+|||++|++-=-|..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~---L~pGG~lilEpQ~w~s 49 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSL---LRPGGILILEPQPWKS 49 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHH---EEEEEEEEEE---HHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHh---hCCCCEEEEeCCCcHH
Confidence 4899998654 23356688888888 9999999998655444
No 358
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=89.57 E-value=3.7 Score=36.83 Aligned_cols=103 Identities=22% Similarity=0.315 Sum_probs=57.9
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
.+..++.+||-.|+| .|..++.+++..+ ...+++++.+++..+.+++ .|...-+.....+..+.+... ...
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~---~~~ 234 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILEL---TGG 234 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHH---cCC
Confidence 345567788887764 3666677777653 1478888887766555443 332211122222222222222 113
Q ss_pred CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+.+|++|-.... ...+....+. |+++|.++.-
T Consensus 235 ~~~d~vld~~g~---~~~~~~~~~~---l~~~G~~v~~ 266 (347)
T cd05278 235 RGVDCVIEAVGF---EETFEQAVKV---VRPGGTIANV 266 (347)
T ss_pred CCCcEEEEccCC---HHHHHHHHHH---hhcCCEEEEE
Confidence 579988843222 1346666777 9999988753
No 359
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=89.30 E-value=0.97 Score=32.67 Aligned_cols=85 Identities=15% Similarity=0.195 Sum_probs=50.4
Q ss_pred EEEEcccccHHHHHHHHHCCC-C---CEEE-EEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 123 CIEVGVYTGYSSLAIALVLPE-S---GCLV-ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 123 VLEIG~G~G~~t~~la~~~~~-~---~~v~-~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
|.=||+ |..+..+++.+-. + .+++ ..+.+++..+...+.+ + +.+...+..+.. +.-|
T Consensus 2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~---------~~ad 63 (96)
T PF03807_consen 2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAA---------QEAD 63 (96)
T ss_dssp EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHH---------HHTS
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhh---------ccCC
Confidence 333555 5666666655421 2 5788 4499988765544433 2 344443444443 3569
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCCCcEEE
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIV 229 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv 229 (282)
+||+...+....+.++.+ .. +.++.++|
T Consensus 64 vvilav~p~~~~~v~~~i-~~---~~~~~~vi 91 (96)
T PF03807_consen 64 VVILAVKPQQLPEVLSEI-PH---LLKGKLVI 91 (96)
T ss_dssp EEEE-S-GGGHHHHHHHH-HH---HHTTSEEE
T ss_pred EEEEEECHHHHHHHHHHH-hh---ccCCCEEE
Confidence 999999999999988888 44 45555443
No 360
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.18 E-value=2.1 Score=39.79 Aligned_cols=83 Identities=19% Similarity=0.167 Sum_probs=51.0
Q ss_pred CEEEEEcccccHHHHHHHHHCC-C-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCce
Q 023411 121 QRCIEVGVYTGYSSLAIALVLP-E-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY 196 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~-~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~f 196 (282)
++||-|||| ..+...+..+. . ..+|+..|.+++..+.+..... .+++..+-|+.+. +..+. ..+
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li-----~~~ 69 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALI-----KDF 69 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHH-----hcC
Confidence 478999995 44444443321 1 2799999999887766655432 2688888887653 33443 455
Q ss_pred eEEEEcCCccccHHHHHHH
Q 023411 197 DFAFVDAEKRMYQEYFELL 215 (282)
Q Consensus 197 DlV~id~~~~~~~~~l~~~ 215 (282)
|+|+.-.+.......++.|
T Consensus 70 d~VIn~~p~~~~~~i~ka~ 88 (389)
T COG1748 70 DLVINAAPPFVDLTILKAC 88 (389)
T ss_pred CEEEEeCCchhhHHHHHHH
Confidence 9998766544433333333
No 361
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.94 E-value=8.8 Score=35.69 Aligned_cols=102 Identities=16% Similarity=0.222 Sum_probs=54.9
Q ss_pred EEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHH------------HHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411 122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKK------------YYERAGVSHKVKIKHGLAADSLKALI 188 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~------------~~~~~g~~~~v~~~~gd~~~~l~~l~ 188 (282)
+|--+|+| |.++..+..+.. +-+|+++|++++-++..++ .++.+....|+++.. |..+ ..
T Consensus 2 kI~viGtG--YVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTt-d~~~---a~- 74 (414)
T COG1004 2 KITVIGTG--YVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTT-DYEE---AV- 74 (414)
T ss_pred ceEEECCc--hHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEc-CHHH---HH-
Confidence 45556765 443332222211 3589999999987766543 233333333455432 2221 11
Q ss_pred hCCCCCceeEEEEcCC---c----cc---cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 189 LNGEASSYDFAFVDAE---K----RM---YQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 189 ~~~~~~~fDlV~id~~---~----~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
...|++|+.-+ . -+ .....+.+.+. ++..-++|+......|+
T Consensus 75 -----~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~---~~~~~vvV~KSTVPvGt 126 (414)
T COG1004 75 -----KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEI---LDGKAVVVIKSTVPVGT 126 (414)
T ss_pred -----hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhh---cCCCeEEEEcCCCCCCc
Confidence 35588887533 1 11 22233444444 77778889888888886
No 362
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.89 E-value=4.2 Score=38.20 Aligned_cols=88 Identities=10% Similarity=0.078 Sum_probs=55.7
Q ss_pred cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
..+++|+-+|+|. |......++.. +++|+.+|.++...+.|++ .|. +.+ +.. .. -...
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~----e~-----v~~a 258 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TME----EA-----VKEG 258 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHH----HH-----HcCC
Confidence 3688999999985 55555566655 4799999999987766654 243 211 111 12 1457
Q ss_pred eEEEEcCCccccHHHHHH-HHHhhcCCCCCcEEEEeC
Q 023411 197 DFAFVDAEKRMYQEYFEL-LLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 197 DlV~id~~~~~~~~~l~~-~~~~~~~LkpgG~lv~dd 232 (282)
|+||...... ..+.. ..+. +|+||+++.-.
T Consensus 259 DVVI~atG~~---~~i~~~~l~~---mk~GgilvnvG 289 (413)
T cd00401 259 DIFVTTTGNK---DIITGEHFEQ---MKDGAIVCNIG 289 (413)
T ss_pred CEEEECCCCH---HHHHHHHHhc---CCCCcEEEEeC
Confidence 9998654422 23433 3566 99999987644
No 363
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=88.87 E-value=2 Score=38.40 Aligned_cols=87 Identities=15% Similarity=0.136 Sum_probs=52.8
Q ss_pred CCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 119 ~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
++++||=+|+| .|..+..+++..+ ...++++|.+++.++.+.+. . ++ |..+. . ...+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~-----~~g~D 202 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P-----RRDYR 202 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c-----CCCCC
Confidence 46688888876 4666677777664 22477788887766554431 1 11 11110 1 35789
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN 232 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd 232 (282)
+||-..... ..++.+.++ |+++|.+++=.
T Consensus 203 vvid~~G~~---~~~~~~~~~---l~~~G~iv~~G 231 (308)
T TIGR01202 203 AIYDASGDP---SLIDTLVRR---LAKGGEIVLAG 231 (308)
T ss_pred EEEECCCCH---HHHHHHHHh---hhcCcEEEEEe
Confidence 888544322 345677788 99999998643
No 364
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=88.84 E-value=4.8 Score=37.55 Aligned_cols=104 Identities=18% Similarity=0.201 Sum_probs=60.0
Q ss_pred hhcCCCEEEEEc-cc-ccHHHHHHHHHCCCC-CEEEEEecCccHHHHHHHHHHHh----CCCCcEEEEE----cchhhHH
Q 023411 116 QILGAQRCIEVG-VY-TGYSSLAIALVLPES-GCLVACERDARSLEVAKKYYERA----GVSHKVKIKH----GLAADSL 184 (282)
Q Consensus 116 ~~~~~~~VLEIG-~G-~G~~t~~la~~~~~~-~~v~~iD~s~~~~~~a~~~~~~~----g~~~~v~~~~----gd~~~~l 184 (282)
...++.+|+=+| +| .|..+..+++...-+ .+|+++|.+++.++.+++.+... |.. ..++. .+..+.+
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~i~~~~~~~~~~~v 249 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE--LLYVNPATIDDLHATL 249 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce--EEEECCCccccHHHHH
Confidence 345667888887 33 566777777765312 37999999999988887753211 211 12221 1222222
Q ss_pred HHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 185 ~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
..+. ....+|+||..... ...+....++ ++++|.+++
T Consensus 250 ~~~t---~g~g~D~vid~~g~---~~~~~~a~~~---l~~~G~~v~ 286 (410)
T cd08238 250 MELT---GGQGFDDVFVFVPV---PELVEEADTL---LAPDGCLNF 286 (410)
T ss_pred HHHh---CCCCCCEEEEcCCC---HHHHHHHHHH---hccCCeEEE
Confidence 2221 13469998875432 2346667777 898775443
No 365
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=88.80 E-value=7.1 Score=35.61 Aligned_cols=104 Identities=16% Similarity=0.231 Sum_probs=58.0
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc--chhhHHHHHHhCC
Q 023411 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNG 191 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~l~~~~ 191 (282)
....++++||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~--- 254 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT--- 254 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh---
Confidence 445678899988864 2444555666653 2379999999887776643 344321211110 1112222221
Q ss_pred CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeCC
Q 023411 192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDNV 233 (282)
Q Consensus 192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd~ 233 (282)
.+.+|++|-.... ...+....+. +++| |.++.-..
T Consensus 255 -~~~~d~vid~~G~---~~~~~~~~~~---~~~~~g~~v~~g~ 290 (369)
T cd08301 255 -GGGVDYSFECTGN---IDAMISAFEC---VHDGWGVTVLLGV 290 (369)
T ss_pred -CCCCCEEEECCCC---hHHHHHHHHH---hhcCCCEEEEECc
Confidence 2468977743322 2345556677 8996 88876443
No 366
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=88.42 E-value=7.9 Score=34.65 Aligned_cols=102 Identities=18% Similarity=0.303 Sum_probs=61.1
Q ss_pred HHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411 114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (282)
Q Consensus 114 l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~ 192 (282)
.....++.+||-.|+|. |..++.+++.. +.+++++..+++..+.+++ .+...-+.....+..+.+.... .
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~---~ 224 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT---D 224 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh---C
Confidence 34456778999888763 66777788876 4789999888776665533 3332212222222222222221 1
Q ss_pred CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
...+|++|-.... ...+..+.+. |+++|.++.
T Consensus 225 ~~~vd~vld~~g~---~~~~~~~~~~---l~~~G~~i~ 256 (337)
T cd08261 225 GEGADVVIDATGN---PASMEEAVEL---VAHGGRVVL 256 (337)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHH---HhcCCEEEE
Confidence 3468999865432 2335666777 899998775
No 367
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=88.26 E-value=7 Score=35.46 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=55.0
Q ss_pred CCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 119 GAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 119 ~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
++.+||=.|+| .|..+..+++..+ . ++++++.+++..+.++ ..|...-+.....+..+....+........+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G--~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAG--ARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 66788877754 3444556666653 5 8999998877665543 3454321111111111111111111113579
Q ss_pred eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
|+||-.... ...+....+. |+++|.++.=
T Consensus 251 d~vid~~g~---~~~~~~~~~~---l~~~G~~v~~ 279 (361)
T cd08231 251 DVVIEASGH---PAAVPEGLEL---LRRGGTYVLV 279 (361)
T ss_pred cEEEECCCC---hHHHHHHHHH---hccCCEEEEE
Confidence 998854332 2345566677 9999988753
No 368
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=87.97 E-value=2.3 Score=37.34 Aligned_cols=64 Identities=19% Similarity=0.079 Sum_probs=41.7
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCC----CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPE----SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
.+...++|+|||.|..+.+++..++. ...++.||...... .+-..+........++=+..|+.+
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeec
Confidence 35568999999999999999998842 46899999865433 223333332211235555556555
No 369
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.93 E-value=6.3 Score=35.48 Aligned_cols=102 Identities=20% Similarity=0.300 Sum_probs=58.5
Q ss_pred HHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch---hhHHHHHH
Q 023411 114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLA---ADSLKALI 188 (282)
Q Consensus 114 l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~---~~~l~~l~ 188 (282)
.....++.+||-.|+|. |..+..+++..+ .+ +++++.+++..+.+++ .|...-+.....+. .+.+....
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence 34456778888777654 666777787754 55 8888888776665544 23322111111121 11112221
Q ss_pred hCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 189 ~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
....+|+||-..... ..+....+. |+++|.++.
T Consensus 231 ---~~~~~d~vld~~g~~---~~~~~~~~~---l~~~G~~v~ 263 (343)
T cd05285 231 ---GGKGPDVVIECTGAE---SCIQTAIYA---TRPGGTVVL 263 (343)
T ss_pred ---CCCCCCEEEECCCCH---HHHHHHHHH---hhcCCEEEE
Confidence 135699988644322 245666777 999998875
No 370
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=87.67 E-value=2.8 Score=37.66 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=77.1
Q ss_pred CCEEEEEcccccHHHHHHHHHC-------------------CCCCEEEEEecCcc--HHHHHHHHHHHh-----------
Q 023411 120 AQRCIEVGVYTGYSSLAIALVL-------------------PESGCLVACERDAR--SLEVAKKYYERA----------- 167 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~-------------------~~~~~v~~iD~s~~--~~~~a~~~~~~~----------- 167 (282)
..+||-||-|.|.-.+.++..+ ++...++.||+-+= .+......+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4699999999998877777766 01148999998642 222222222222
Q ss_pred --CC-C--CcEEEEEcchhhHHH-HHHhCCCCCceeEEEE--------cCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 168 --GV-S--HKVKIKHGLAADSLK-ALILNGEASSYDFAFV--------DAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 168 --g~-~--~~v~~~~gd~~~~l~-~l~~~~~~~~fDlV~i--------d~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
.. . =+++|.+.|+..... ++...-.....|+|-+ .........++..+-.. ++||.+|+| +
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~---~~~GslLLV--v 241 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDI---CPPGSLLLV--V 241 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhh---cCCCcEEEE--E
Confidence 00 1 147888888876432 2111000124565521 11245566677888777 999998877 3
Q ss_pred CCCCcccCCcCC-ChhhHHHHHHHHHh
Q 023411 234 LWHGKVADQMVN-DAKTISIRNFNKNL 259 (282)
Q Consensus 234 ~~~g~~~~~~~~-~~~~~~~~~~~~~~ 259 (282)
--+|...+-..+ ..++.-|+.+++++
T Consensus 242 DSpGSYS~~tvg~~~kkyPmqfLlD~~ 268 (315)
T PF11312_consen 242 DSPGSYSEITVGKEEKKYPMQFLLDHT 268 (315)
T ss_pred cCCCCchheeeccccCcCcHHHHHHHH
Confidence 345554433332 34455677777774
No 371
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=87.54 E-value=8.7 Score=35.06 Aligned_cols=102 Identities=15% Similarity=0.281 Sum_probs=57.8
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc--chhhHHHHHHhC
Q 023411 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILN 190 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~l~~~ 190 (282)
....++.+||-+|+| .|..+..+++..+ . +|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G--~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~-- 251 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAG--ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT-- 251 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh--
Confidence 345677899888874 3445556677653 5 79999998887766643 344321221111 1122222221
Q ss_pred CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeC
Q 023411 191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDN 232 (282)
Q Consensus 191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd 232 (282)
...+|+||-.... ...+....+. ++++ |.++.=.
T Consensus 252 --~~g~d~vid~~g~---~~~~~~~~~~---l~~~~G~~v~~g 286 (365)
T cd08277 252 --GGGVDYSFECTGN---ADLMNEALES---TKLGWGVSVVVG 286 (365)
T ss_pred --CCCCCEEEECCCC---hHHHHHHHHh---cccCCCEEEEEc
Confidence 2468988854332 2345666677 8875 8877643
No 372
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=87.46 E-value=18 Score=33.89 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEe-cCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACE-RDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD-~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
+|....+-..+.....+..++-.-+|...++..+...+|.+.++++.+ .--.-....++.....|.. .+++..+-.+
T Consensus 76 nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie--~~~vd~~~~~ 153 (409)
T KOG0053|consen 76 NPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGE--GDFVDVDDLK 153 (409)
T ss_pred CCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCce--eeeechhhHH
Confidence 334444455566666777788889988888888887778777877775 3445566677777766654 5666554444
Q ss_pred HHHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411 183 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG 237 (282)
Q Consensus 183 ~l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g 237 (282)
.+.... .+..++||+..+ +-.....++.+.+++. ++|-.+|+||.+-+.
T Consensus 154 ~~~~~i----~~~t~~V~~ESPsNPll~v~DI~~l~~la~--~~g~~vvVDnTf~~p 204 (409)
T KOG0053|consen 154 KILKAI----KENTKAVFLESPSNPLLKVPDIEKLARLAH--KYGFLVVVDNTFGSP 204 (409)
T ss_pred HHHHhh----ccCceEEEEECCCCCccccccHHHHHHHHh--hCCCEEEEeCCcCcc
Confidence 333332 346899999765 2222334666666622 456677888887555
No 373
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.45 E-value=13 Score=34.48 Aligned_cols=107 Identities=17% Similarity=0.232 Sum_probs=59.6
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE-cchhhHHHHHHhCCC
Q 023411 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGE 192 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~l~~~~~ 192 (282)
....++++||-.|+| .|..+..+++... ...++++|.+++.++.+++ .|.. .+.... .+..+.+..+. .
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~~~~~~v~~~~---~ 251 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE-TVDLSKDATLPEQIEQIL---G 251 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe-EEecCCcccHHHHHHHHc---C
Confidence 344567788777765 3445556676653 2346677888777776665 3432 111111 12222222221 1
Q ss_pred CCceeEEEEcCCccc-----------cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 193 ASSYDFAFVDAEKRM-----------YQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 193 ~~~fDlV~id~~~~~-----------~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
...+|++|--..... ....++...++ +++||.+++=.+
T Consensus 252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~G~i~~~G~ 300 (393)
T TIGR02819 252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEV---TRVGGAIGIPGL 300 (393)
T ss_pred CCCCcEEEECCCCccccccccccccchHHHHHHHHHH---hhCCCEEEEeee
Confidence 246898885443221 12357777788 999999988544
No 374
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=87.12 E-value=18 Score=33.50 Aligned_cols=127 Identities=15% Similarity=0.189 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
+|....+-..++.......++=..+|++.....+...+.++.+|+..+..-. ....+....+..|.. ++++..+..+
T Consensus 49 nPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~--v~~~d~~~~e 126 (377)
T TIGR01324 49 TLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVD--ITYYDPLIGE 126 (377)
T ss_pred CccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcE--EEEECCCCHH
Confidence 3444444555555555567776777777666655555665678877664322 222233334444442 4443221112
Q ss_pred HHHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCC-CcEEEEeCCCCCCcc
Q 023411 183 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRV-GGIIVIDNVLWHGKV 239 (282)
Q Consensus 183 ~l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~~g~~ 239 (282)
.+.... ..+..+|++..+ .......++.+.++ .+. |-.+++|++...|..
T Consensus 127 ~l~~~i----~~~tklV~lesp~Np~g~~~dl~~I~~l---a~~~g~~livD~t~a~g~~ 179 (377)
T TIGR01324 127 DIATLI----QPNTKVLFLEAPSSITFEIQDIPAIAKA---ARNPGIVIMIDNTWAAGLL 179 (377)
T ss_pred HHHHhc----CCCceEEEEECCCCCCCcHHHHHHHHHH---HHHcCCEEEEECCCccccc
Confidence 333322 345678887654 22344456667666 554 557788888766554
No 375
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=86.92 E-value=4.3 Score=36.28 Aligned_cols=87 Identities=15% Similarity=0.198 Sum_probs=48.9
Q ss_pred CEEEEEcccccHHHHHHHHHCCCC---CEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.+|.=||+|. .+..++..+... .+|+++|.+++..+.+++ .|... . ...+. ... ....|
T Consensus 7 ~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~----~~~-----~~~aD 68 (307)
T PRK07502 7 DRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSA----AEA-----VKGAD 68 (307)
T ss_pred cEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCH----HHH-----hcCCC
Confidence 4688888764 333333333212 379999999876655432 33221 1 11111 111 24578
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCCCcEE
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGII 228 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~l 228 (282)
+|++..+.......++.+.+. +++|+++
T Consensus 69 vViiavp~~~~~~v~~~l~~~---l~~~~iv 96 (307)
T PRK07502 69 LVILCVPVGASGAVAAEIAPH---LKPGAIV 96 (307)
T ss_pred EEEECCCHHHHHHHHHHHHhh---CCCCCEE
Confidence 888877765555666666666 7777644
No 376
>PRK09028 cystathionine beta-lyase; Provisional
Probab=86.70 E-value=17 Score=33.86 Aligned_cols=121 Identities=13% Similarity=0.146 Sum_probs=65.7
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCc-cHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH
Q 023411 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL 187 (282)
Q Consensus 109 ~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~-~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l 187 (282)
.+-..++....+..++=..+|+..+...+...+.++.+|+..+..- .....+...+...|.. +.++..+..+.+...
T Consensus 65 ~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~--v~~v~~~~~e~l~~~ 142 (394)
T PRK09028 65 AFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIE--TTYYDPMIGEGIREL 142 (394)
T ss_pred HHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceE--EEEECCCCHHHHHHh
Confidence 3334444444445677677777666555544466577888877542 3333344444444542 444432222333333
Q ss_pred HhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCC-CcEEEEeCCCCCCc
Q 023411 188 ILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRV-GGIIVIDNVLWHGK 238 (282)
Q Consensus 188 ~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~~g~ 238 (282)
. ..+-.+|++..+ +......++.+.++ .+. |-.+++|++...+.
T Consensus 143 l----~~~TklV~lespsNPtg~v~dl~~I~~l---a~~~g~~lvvD~t~a~p~ 189 (394)
T PRK09028 143 I----RPNTKVLFLESPGSITMEVQDVPTLSRI---AHEHDIVVMLDNTWASPI 189 (394)
T ss_pred c----CcCceEEEEECCCCCCCcHHHHHHHHHH---HHHcCCEEEEECCccccc
Confidence 2 244578888755 22334456666666 554 55777888875554
No 377
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=86.62 E-value=9.6 Score=34.81 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=53.3
Q ss_pred cCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 118 ~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
.++++||-.|+| .|..++.+++.. +.++++++.+++....+ .+..|.. .++.....+.+... .+.+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~-----~~~~ 248 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAA-----IGTM 248 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhh-----cCCC
Confidence 467788888875 355566677765 46888888876543222 2234432 12211111122222 2358
Q ss_pred eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
|+||-... ....++...++ |++||.++.=
T Consensus 249 D~vid~~g---~~~~~~~~~~~---l~~~G~iv~v 277 (360)
T PLN02586 249 DYIIDTVS---AVHALGPLLGL---LKVNGKLITL 277 (360)
T ss_pred CEEEECCC---CHHHHHHHHHH---hcCCcEEEEe
Confidence 98884332 12346667788 9999988753
No 378
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.55 E-value=7.4 Score=35.16 Aligned_cols=110 Identities=14% Similarity=0.127 Sum_probs=64.0
Q ss_pred HHHhhcCCCEEEEEcccccHHH-HHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEE--EcchhhHHHHHHh
Q 023411 113 MLVQILGAQRCIEVGVYTGYSS-LAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--HGLAADSLKALIL 189 (282)
Q Consensus 113 ~l~~~~~~~~VLEIG~G~G~~t-~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~--~gd~~~~l~~l~~ 189 (282)
..+...++.+|.-+|+|.=.++ ..-++..+ .+++++||++++-.+.|++. |..+-++-. +..+.+.+.++-
T Consensus 186 ~~Akv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~d~~~~i~evi~EmT- 259 (375)
T KOG0022|consen 186 NTAKVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEF----GATEFINPKDLKKPIQEVIIEMT- 259 (375)
T ss_pred hhcccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhc----CcceecChhhccccHHHHHHHHh-
Confidence 4456678889999999753333 33444433 57999999999988877763 333222211 113444444443
Q ss_pred CCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeCCCCCC
Q 023411 190 NGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDNVLWHG 237 (282)
Q Consensus 190 ~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd~~~~g 237 (282)
++.+|.-|-..... +.+.++... .++| |.-|+=.+.-.|
T Consensus 260 ---dgGvDysfEc~G~~---~~m~~al~s---~h~GwG~sv~iGv~~~~ 299 (375)
T KOG0022|consen 260 ---DGGVDYSFECIGNV---STMRAALES---CHKGWGKSVVIGVAAAG 299 (375)
T ss_pred ---cCCceEEEEecCCH---HHHHHHHHH---hhcCCCeEEEEEecCCC
Confidence 58899988443322 234444444 5666 666654444333
No 379
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=86.45 E-value=20 Score=33.61 Aligned_cols=105 Identities=10% Similarity=0.185 Sum_probs=56.5
Q ss_pred CEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC------CC
Q 023411 121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------EA 193 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~------~~ 193 (282)
.+|.=||.|. .+..+|..+. .+.+|+++|++++.++..+. |. +.+...+..+.+......+ ..
T Consensus 4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-----g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTINR-----GE---IHIVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-----CC---CCcCCCCHHHHHHHHhhcCceeeeccc
Confidence 4677788764 3334443332 24689999999987664221 11 2222222222221111100 01
Q ss_pred CceeEEEEcCCc----------cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 194 SSYDFAFVDAEK----------RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 194 ~~fDlV~id~~~----------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
...|+||+.-+. .......+.+.+. +++|.++|......+|.
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~---l~~g~iVI~~STv~pgt 125 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPV---LKKGDLVILESTSPVGA 125 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHh---CCCCCEEEEeCCCCCCH
Confidence 356898876443 2233345556666 89998888887777776
No 380
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=86.41 E-value=1.9 Score=37.12 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=41.0
Q ss_pred cccHHH--HHHHHHC-CCCCEEEEEecCccH--HHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcC
Q 023411 129 YTGYSS--LAIALVL-PESGCLVACERDARS--LEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 203 (282)
Q Consensus 129 G~G~~t--~~la~~~-~~~~~v~~iD~s~~~--~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~ 203 (282)
|.|-.| ..++..+ ..+.+|.-||-+|.. .++.+...+...+++++.+...+-...+......-+...||+||+|-
T Consensus 12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~VlvDl 91 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLVDL 91 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEEeC
Confidence 444444 3344444 246799999988864 34433222222345567776655444444433221234699999984
No 381
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=86.40 E-value=10 Score=34.17 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=58.8
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~ 192 (282)
....++.+||=.|+| .|..+..+++.. +. +|++++.+++..+.+++ .|.+.-+.....+..+.+.... .
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~---~ 238 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT---G 238 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh---C
Confidence 344567788888754 344455566665 35 79999988887766643 2443212222223322222221 1
Q ss_pred CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
...+|+|+-.... ...++.+.+. |+++|.++.=
T Consensus 239 ~~~~d~vid~~g~---~~~~~~~~~~---l~~~G~~v~~ 271 (351)
T cd08233 239 GGGVDVSFDCAGV---QATLDTAIDA---LRPRGTAVNV 271 (351)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHh---ccCCCEEEEE
Confidence 2459999864432 2245667777 9999988763
No 382
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=86.36 E-value=8.8 Score=35.01 Aligned_cols=101 Identities=15% Similarity=0.224 Sum_probs=58.0
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411 115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
....++++||-.|+|. |..+..+++..+ -.++++++.+++..+.+++ .|...-+.....+..+.+.... .
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~ 252 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT----G 252 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh----C
Confidence 3445678888887653 556666777764 2369999998877665543 3432111111112222222221 3
Q ss_pred CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
..+|+|+-..... ..+....+. ++++|.++.
T Consensus 253 ~~~d~vld~~g~~---~~~~~~~~~---l~~~G~~v~ 283 (365)
T cd08278 253 GGVDYALDTTGVP---AVIEQAVDA---LAPRGTLAL 283 (365)
T ss_pred CCCcEEEECCCCc---HHHHHHHHH---hccCCEEEE
Confidence 5689888544322 235667777 899998876
No 383
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=86.32 E-value=2.6 Score=36.01 Aligned_cols=60 Identities=23% Similarity=0.208 Sum_probs=45.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
...-|+|||.|.|+++..+..+- -.++..+|+++.++.-.+-..+.+ ..+..++++|+..
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLR 109 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcC--CcceEEeccccce
Confidence 45579999999999999998763 368899999998877665544433 2368888888764
No 384
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.87 E-value=18 Score=30.40 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=49.3
Q ss_pred CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CC
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA 193 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~ 193 (282)
.+++||-.|++ |..+..+++.+. .+.+|++++.+++..+...+..... .++.++.+|..+. ...+.+.. ..
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 35688888874 666666666552 3579999999887665554444332 2478888887642 11111110 02
Q ss_pred CceeEEEEcCC
Q 023411 194 SSYDFAFVDAE 204 (282)
Q Consensus 194 ~~fDlV~id~~ 204 (282)
+.+|.++....
T Consensus 80 ~~id~ii~~ag 90 (238)
T PRK05786 80 NAIDGLVVTVG 90 (238)
T ss_pred CCCCEEEEcCC
Confidence 46788887654
No 385
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=85.42 E-value=6.2 Score=35.33 Aligned_cols=94 Identities=21% Similarity=0.273 Sum_probs=55.7
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 119 GAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
++.+||-.|+|. |..+..+++..+ . ++++++.+++..+.+++ .+.. .++..+... +..... ..+.+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G--~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~--~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAG--AAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA--DKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc--cCCCc
Confidence 677888888764 556677777663 4 78999988876665443 2332 222211111 111111 12469
Q ss_pred eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
|+++-.... ...++...+. |+++|.++.
T Consensus 233 d~vld~~g~---~~~~~~~~~~---L~~~G~~v~ 260 (339)
T cd08232 233 DVVFEASGA---PAALASALRV---VRPGGTVVQ 260 (339)
T ss_pred cEEEECCCC---HHHHHHHHHH---HhcCCEEEE
Confidence 999864432 2345667777 999998875
No 386
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.37 E-value=11 Score=34.96 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=63.8
Q ss_pred EEEEe-cCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc--ccHHHHHHHHHhhcCCC
Q 023411 147 LVACE-RDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLLLQIR 223 (282)
Q Consensus 147 v~~iD-~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~--~~~~~l~~~~~~~~~Lk 223 (282)
+++-| .-+.+.+..+++..+.+++--..+...|...+...-.+..-.+.||+|++|-.-. .....|+++..+.+.++
T Consensus 134 LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~ 213 (483)
T KOG0780|consen 134 LVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIK 213 (483)
T ss_pred EEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcC
Confidence 45555 4566778888888776654222222333322221111111258999999997733 34557888888888899
Q ss_pred CCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEee
Q 023411 224 VGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVP 271 (282)
Q Consensus 224 pgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 271 (282)
|+-+|++=|.-. +.....-.+.|.+.+ ++..+++.
T Consensus 214 Pd~vi~VmDasi---------GQaae~Qa~aFk~~v----dvg~vIlT 248 (483)
T KOG0780|consen 214 PDEIIFVMDASI---------GQAAEAQARAFKETV----DVGAVILT 248 (483)
T ss_pred CCeEEEEEeccc---------cHhHHHHHHHHHHhh----ccceEEEE
Confidence 998776644421 112223456677655 45555544
No 387
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=85.31 E-value=7 Score=36.29 Aligned_cols=92 Identities=13% Similarity=0.121 Sum_probs=59.5
Q ss_pred EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCc-EEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLKALILNGEASSYDFAF 200 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~-v~~~~gd~~~~l~~l~~~~~~~~fDlV~ 200 (282)
+|+-++=..|..+++++..-+ +.+-=|--...-.++|++.+|+... +++. +..+.+ .+.+|+|+
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~--------~~~~d~vl 111 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFL--DSTADY--------PQQPGVVL 111 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceee--cccccc--------cCCCCEEE
Confidence 789999999999999995432 2221111223445788888887643 5554 222222 36799999
Q ss_pred EcCCcc--ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 201 VDAEKR--MYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 201 id~~~~--~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+--++. .....+..+... |.||+.+++-
T Consensus 112 ~~~PK~~~~l~~~l~~l~~~---l~~~~~ii~g 141 (378)
T PRK15001 112 IKVPKTLALLEQQLRALRKV---VTSDTRIIAG 141 (378)
T ss_pred EEeCCCHHHHHHHHHHHHhh---CCCCCEEEEE
Confidence 876643 344456666667 9999998764
No 388
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=85.27 E-value=3.3 Score=33.17 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=53.4
Q ss_pred EEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC------CCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG------VSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 123 VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g------~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
|.-||+|.+..++...-... +.+|+-...+++.++..++.-.... +..++.+ ..|..+. + ...
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a---~------~~a 70 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEA---L------EDA 70 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHH---H------TT-
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHH---h------Ccc
Confidence 55677776655444222221 3489999998877665554322111 1123433 2333222 2 456
Q ss_pred eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
|+|++--+.....++++.+.+. ++++-.++.
T Consensus 71 d~IiiavPs~~~~~~~~~l~~~---l~~~~~ii~ 101 (157)
T PF01210_consen 71 DIIIIAVPSQAHREVLEQLAPY---LKKGQIIIS 101 (157)
T ss_dssp SEEEE-S-GGGHHHHHHHHTTT---SHTT-EEEE
T ss_pred cEEEecccHHHHHHHHHHHhhc---cCCCCEEEE
Confidence 9999988877788899999988 877766655
No 389
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=85.12 E-value=5.7 Score=35.44 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=49.3
Q ss_pred CCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCce
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY 196 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~f 196 (282)
+++||-.| |+|.++..+++.+- .+.+|+++..++.............+...+++++.+|..+. +.... ..+
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~-----~~~ 78 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI-----DGC 78 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH-----cCC
Confidence 46788777 57888888887663 35688887777654433322222223334688999998763 23332 457
Q ss_pred eEEEEcCC
Q 023411 197 DFAFVDAE 204 (282)
Q Consensus 197 DlV~id~~ 204 (282)
|.||..+.
T Consensus 79 d~vih~A~ 86 (325)
T PLN02989 79 ETVFHTAS 86 (325)
T ss_pred CEEEEeCC
Confidence 98887654
No 390
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=84.97 E-value=18 Score=32.43 Aligned_cols=97 Identities=14% Similarity=0.123 Sum_probs=53.1
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCC--CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
.++.+|+-||+ |..+..++..+. ...+|+.++.+++..+...+ ..|. ..+. ..+. ... -..
T Consensus 176 l~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~---~~g~----~~~~--~~~~-~~~-----l~~ 238 (311)
T cd05213 176 LKGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAK---ELGG----NAVP--LDEL-LEL-----LNE 238 (311)
T ss_pred ccCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH---HcCC----eEEe--HHHH-HHH-----Hhc
Confidence 36789999998 455555444432 12579999998765433222 2232 2221 2222 222 245
Q ss_pred eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
.|+||.-.....+........+. .+.++.+++|-..
T Consensus 239 aDvVi~at~~~~~~~~~~~~~~~---~~~~~~~viDlav 274 (311)
T cd05213 239 ADVVISATGAPHYAKIVERAMKK---RSGKPRLIVDLAV 274 (311)
T ss_pred CCEEEECCCCCchHHHHHHHHhh---CCCCCeEEEEeCC
Confidence 79999876655543333433332 3336788887554
No 391
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.82 E-value=14 Score=33.53 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=57.8
Q ss_pred cCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 118 ~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
.+++.|--+|.| -|..+..+|++++ .+|++||-++.-- ++.++..|-+.-+.+. . -.+....+ .+..
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kk---eea~~~LGAd~fv~~~-~-d~d~~~~~-----~~~~ 247 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKK---EEAIKSLGADVFVDST-E-DPDIMKAI-----MKTT 247 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhH---HHHHHhcCcceeEEec-C-CHHHHHHH-----HHhh
Confidence 366677666654 7899999999994 8999999987433 3445555654322222 1 22344444 2344
Q ss_pred eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
|.++.... .-....++.+..+ ||++|.+|+=
T Consensus 248 dg~~~~v~-~~a~~~~~~~~~~---lk~~Gt~V~v 278 (360)
T KOG0023|consen 248 DGGIDTVS-NLAEHALEPLLGL---LKVNGTLVLV 278 (360)
T ss_pred cCcceeee-eccccchHHHHHH---hhcCCEEEEE
Confidence 44432211 0011225667777 9999998883
No 392
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=84.69 E-value=0.78 Score=34.50 Aligned_cols=33 Identities=9% Similarity=-0.035 Sum_probs=24.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCc
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA 154 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~ 154 (282)
+....+|||||+|....-+.+. +..-.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence 4457999999999987766653 45668888754
No 393
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.68 E-value=8.1 Score=32.34 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=54.2
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
....+++||-+|+. +|..+..++ .+..+|+.+|++|.+-.. +.+.|+|..+ +..+ .+
T Consensus 41 ~~~E~~~vli~G~YltG~~~a~~L---s~~~~vtv~Di~p~~r~~---------lp~~v~Fr~~-----~~~~-----~G 98 (254)
T COG4017 41 EGEEFKEVLIFGVYLTGNYTAQML---SKADKVTVVDIHPFMRGF---------LPNNVKFRNL-----LKFI-----RG 98 (254)
T ss_pred cccCcceEEEEEeeehhHHHHHHh---cccceEEEecCCHHHHhc---------CCCCccHhhh-----cCCC-----CC
Confidence 34467899999987 555554444 346899999999865322 3445665533 2222 58
Q ss_pred ceeEEEEcCCccc-cHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411 195 SYDFAFVDAEKRM-YQEYFELLLQLLLQIRVGGIIVIDNVLWH 236 (282)
Q Consensus 195 ~fDlV~id~~~~~-~~~~l~~~~~~~~~LkpgG~lv~dd~~~~ 236 (282)
.+|+|+---.... .+. .+.+ +.| +++++.|..-+
T Consensus 99 ~~DlivDlTGlGG~~Pe---~L~~----fnp-~vfiVEdP~gn 133 (254)
T COG4017 99 EVDLIVDLTGLGGIEPE---FLAK----FNP-KVFIVEDPKGN 133 (254)
T ss_pred ceeEEEeccccCCCCHH---HHhc----cCC-ceEEEECCCCC
Confidence 8999984333222 222 2333 455 47888877533
No 394
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=84.55 E-value=3.1 Score=37.28 Aligned_cols=100 Identities=13% Similarity=0.063 Sum_probs=54.2
Q ss_pred EEEEEcccc--cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE-cchhhHHHHHHhCCCCCceeE
Q 023411 122 RCIEVGVYT--GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 122 ~VLEIG~G~--G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~l~~~~~~~~fDl 198 (282)
+|+=+|+|. |+++.+|++. +..|+.++.+++.++..++ ..|+ .+.. +...............+.||+
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~---~~Gl----~i~~~g~~~~~~~~~~~~~~~~~~D~ 73 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQ---AGGL----TLVEQGQASLYAIPAETADAAEPIHR 73 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhh---cCCe----EEeeCCcceeeccCCCCcccccccCE
Confidence 688889873 4445555543 3579999987655443332 1222 1110 100000000000001368999
Q ss_pred EEEcCCccccHHHHHHHHHhhcCCCCCcEE-EEeCCC
Q 023411 199 AFVDAEKRMYQEYFELLLQLLLQIRVGGII-VIDNVL 234 (282)
Q Consensus 199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~l-v~dd~~ 234 (282)
||+..-..+..+.++.+.++ +.+++.+ .+.|-+
T Consensus 74 viv~vK~~~~~~al~~l~~~---l~~~t~vv~lQNGv 107 (305)
T PRK05708 74 LLLACKAYDAEPAVASLAHR---LAPGAELLLLQNGL 107 (305)
T ss_pred EEEECCHHhHHHHHHHHHhh---CCCCCEEEEEeCCC
Confidence 99876655566778888888 8888755 455544
No 395
>PRK07582 cystathionine gamma-lyase; Validated
Probab=84.32 E-value=18 Score=33.29 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCc-cHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAADS 183 (282)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~-~~~~~a~~~~~~~g~~~~v~~~~gd~~~~ 183 (282)
|....+-..++... +..++-+++|+..+...+...+.++.+|+..+..- .....++..+...|. ++.++ +..+.
T Consensus 51 p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v--~~~~~ 125 (366)
T PRK07582 51 PTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREA--PTAGM 125 (366)
T ss_pred ccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEE--CCCCh
Confidence 33444444444444 34566678888766655555555566787776544 223334444444443 24444 33222
Q ss_pred HHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCC-CCcEEEEeCCC
Q 023411 184 LKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIR-VGGIIVIDNVL 234 (282)
Q Consensus 184 l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~Lk-pgG~lv~dd~~ 234 (282)
.... ....++|++..+. ......++.+.++ .+ .|..+++|+..
T Consensus 126 ~~~~-----~~~t~lV~le~p~NPtg~v~di~~I~~~---a~~~g~~lvVD~t~ 171 (366)
T PRK07582 126 AEAA-----LAGADLVLAETPSNPGLDVCDLAALAAA---AHAAGALLVVDNTT 171 (366)
T ss_pred HHHh-----ccCceEEEEECCCCCCCCccCHHHHHHH---HHHcCCEEEEECCC
Confidence 1111 2456788876442 1122335666665 44 46678888875
No 396
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=84.31 E-value=11 Score=32.64 Aligned_cols=94 Identities=21% Similarity=0.255 Sum_probs=56.4
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411 115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~ 192 (282)
....++.+||-.|+|. |..+..+++..+ .+ +++++.+++..+.+++. |..+.+..... .. . .
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~---~~---~----~ 156 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEAL----GPADPVAADTA---DE---I----G 156 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHHc----CCCccccccch---hh---h----c
Confidence 4455778888888764 666677777764 55 99999888877655542 31111111100 00 1 1
Q ss_pred CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
...+|+||...... .......+. |+++|.++.
T Consensus 157 ~~~~d~vl~~~~~~---~~~~~~~~~---l~~~g~~~~ 188 (277)
T cd08255 157 GRGADVVIEASGSP---SALETALRL---LRDRGRVVL 188 (277)
T ss_pred CCCCCEEEEccCCh---HHHHHHHHH---hcCCcEEEE
Confidence 35789888543322 245666777 899998864
No 397
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=84.31 E-value=6.2 Score=36.77 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=53.9
Q ss_pred EEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH---hCC-----CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGV-----SHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 123 VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~---~g~-----~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
|--||+ |+.++.++..+..+.+|+++|++++.++..++.... .++ ....++.... +. ... ..
T Consensus 3 I~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~--~~-~~~-----~~ 72 (388)
T PRK15057 3 ITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATL--DK-NEA-----YR 72 (388)
T ss_pred EEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEec--ch-hhh-----hc
Confidence 444555 555555554443346799999999988776652110 000 0112221110 00 111 14
Q ss_pred ceeEEEEcCCcc--------ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 195 SYDFAFVDAEKR--------MYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 195 ~fDlV~id~~~~--------~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
..|+||+.-+.. +.......+..+.. +++|.++|......+|+
T Consensus 73 ~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgt 123 (388)
T PRK15057 73 DADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGF 123 (388)
T ss_pred CCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCch
Confidence 568888754411 11222233333333 68888888888888876
No 398
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=84.27 E-value=16 Score=32.69 Aligned_cols=101 Identities=26% Similarity=0.349 Sum_probs=55.3
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
...++.+||=.|+| .|..+..+++..+ ..++++++.+++....+++ .|.+.-+.....+..+.+..+. ...
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~---~~~ 234 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT---DGR 234 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh---CCC
Confidence 34566777766653 2334455666553 2578889888776555543 3443223332223222222221 135
Q ss_pred ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
.+|+||-... -...++.+.+. |+++|.++.
T Consensus 235 ~~d~vld~~g---~~~~~~~~~~~---l~~~g~~v~ 264 (345)
T cd08286 235 GVDVVIEAVG---IPATFELCQEL---VAPGGHIAN 264 (345)
T ss_pred CCCEEEECCC---CHHHHHHHHHh---ccCCcEEEE
Confidence 6998884322 12346677777 999998875
No 399
>PRK05939 hypothetical protein; Provisional
Probab=84.19 E-value=22 Score=33.12 Aligned_cols=124 Identities=17% Similarity=0.149 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
+|....+-..++...++...+-+.+|.+.....+...+.++.+|+..+..-. ..... ..+...|. .+.++..+-.+
T Consensus 46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~-~~l~~~G~--~v~~v~~~d~e 122 (397)
T PRK05939 46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLF-GTLRGLGV--EVTMVDATDVQ 122 (397)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHH-HHHHhcCC--EEEEECCCCHH
Confidence 4555666666666666667777787776666555444555677877665321 12222 23444454 24554332222
Q ss_pred HHHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCC-CcEEEEeCCCCCC
Q 023411 183 SLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRV-GGIIVIDNVLWHG 237 (282)
Q Consensus 183 ~l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~~g 237 (282)
.+.... ..+-.+|++.... ......++.+.++ .+. |-.+++|+..-.+
T Consensus 123 ~l~~~l----~~~tklV~vesp~NptG~v~dl~~I~~l---a~~~gi~livD~t~a~~ 173 (397)
T PRK05939 123 NVAAAI----RPNTRMVFVETIANPGTQVADLAGIGAL---CRERGLLYVVDNTMTSP 173 (397)
T ss_pred HHHHhC----CCCCeEEEEECCCCCCCCHHhHHHHHHH---HHHcCCEEEEECCcccc
Confidence 233322 2445678776442 2223445666665 554 4566777765333
No 400
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=84.02 E-value=9.9 Score=35.88 Aligned_cols=103 Identities=15% Similarity=0.253 Sum_probs=59.6
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH---hCC-----CCcEEEEEcchhhHHHHHHhCC
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGV-----SHKVKIKHGLAADSLKALILNG 191 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~---~g~-----~~~v~~~~gd~~~~l~~l~~~~ 191 (282)
+.+|-=||. |+.++.++..+..+.+|+++|++++.++..++.... .++ ..+..+. .+. + .
T Consensus 6 ~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t-~~~-~---~----- 73 (425)
T PRK15182 6 EVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFT-SEI-E---K----- 73 (425)
T ss_pred CCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEE-eCH-H---H-----
Confidence 356766765 778777777776567899999999887665521100 000 0011111 111 1 1
Q ss_pred CCCceeEEEEcCC-c------cccHHHH---HHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 192 EASSYDFAFVDAE-K------RMYQEYF---ELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 192 ~~~~fDlV~id~~-~------~~~~~~l---~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
-...|++|+.-+ + .+....+ +.+.+. |++|.++|......+|.
T Consensus 74 -~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~---l~~g~lVI~~STv~pgt 126 (425)
T PRK15182 74 -IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTV---LNRGDIVVYESTVYPGC 126 (425)
T ss_pred -HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHh---cCCCCEEEEecCCCCcc
Confidence 145688886533 1 2223333 344455 89999998888888886
No 401
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.94 E-value=15 Score=33.61 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=46.2
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCc---------------------cHHHHHHHHHHHhCCCCcEEEE
Q 023411 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA---------------------RSLEVAKKYYERAGVSHKVKIK 176 (282)
Q Consensus 119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~---------------------~~~~~a~~~~~~~g~~~~v~~~ 176 (282)
...+|+=||||. |......+...+ -++++.+|.+. .-.+.+++.++..+..-+++.+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 445899999973 333332222222 26899999864 1234556666665544446666
Q ss_pred Ecchh-hHHHHHHhCCCCCceeEEEEcCC
Q 023411 177 HGLAA-DSLKALILNGEASSYDFAFVDAE 204 (282)
Q Consensus 177 ~gd~~-~~l~~l~~~~~~~~fDlV~id~~ 204 (282)
..+.. +.+..+ -..+|+|+...+
T Consensus 102 ~~~~~~~~~~~~-----~~~~DlVid~~D 125 (338)
T PRK12475 102 VTDVTVEELEEL-----VKEVDLIIDATD 125 (338)
T ss_pred eccCCHHHHHHH-----hcCCCEEEEcCC
Confidence 65553 223333 367899886554
No 402
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=83.82 E-value=7.4 Score=31.67 Aligned_cols=100 Identities=23% Similarity=0.213 Sum_probs=57.9
Q ss_pred EcccccHHHHHHHHHCCCCCEEEEEecCcc--HHH---HHHHHHHHhCCCCcEEEEE-cchhhHHHHHHhCCCCCceeEE
Q 023411 126 VGVYTGYSSLAIALVLPESGCLVACERDAR--SLE---VAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 126 IG~G~G~~t~~la~~~~~~~~v~~iD~s~~--~~~---~a~~~~~~~g~~~~v~~~~-gd~~~~l~~l~~~~~~~~fDlV 199 (282)
+|=|.-.+++.+++..+....+++.-.+.+ ..+ .+.++++...-. .+++.. .|+.+....... ....||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~-g~~V~~~VDat~l~~~~~~--~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL-GVTVLHGVDATKLHKHFRL--KNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc-CCccccCCCCCcccccccc--cCCcCCEE
Confidence 566777788888888764556766655443 221 223444443222 244443 355543322211 15789999
Q ss_pred EEcCCcc----------------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 200 FVDAEKR----------------MYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 200 ~id~~~~----------------~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+-+.++. -...++..+.++ |+++|.|.+.
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~---L~~~G~IhVT 124 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQL---LKPDGEIHVT 124 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHh---cCCCCEEEEE
Confidence 8654311 134577888888 9999998883
No 403
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=83.69 E-value=16 Score=30.56 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=43.4
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCc-------------------cHHHHHHHHHHHhCCCCcEEEEEc
Q 023411 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHG 178 (282)
Q Consensus 119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~g~~~~v~~~~g 178 (282)
...+|+=+|||. |......+...+ -++++.+|.+. .-.+.+.+.++.....-+++.+..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 456899999973 443333333332 36899999762 223445555555443333444443
Q ss_pred chhh-HHHHHHhCCCCCceeEEEEcCC
Q 023411 179 LAAD-SLKALILNGEASSYDFAFVDAE 204 (282)
Q Consensus 179 d~~~-~l~~l~~~~~~~~fDlV~id~~ 204 (282)
...+ .+..+ -..+|+|+...+
T Consensus 99 ~i~~~~~~~~-----~~~~D~Vi~~~d 120 (202)
T TIGR02356 99 RVTAENLELL-----INNVDLVLDCTD 120 (202)
T ss_pred cCCHHHHHHH-----HhCCCEEEECCC
Confidence 3322 22233 267999886544
No 404
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=83.50 E-value=16 Score=34.22 Aligned_cols=126 Identities=18% Similarity=0.188 Sum_probs=70.3
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEec-CccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER-DARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (282)
Q Consensus 103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~-s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (282)
-+|....+-..++.......++-+++|+......+...+.++.+|+..+. .........+.+...|.. +.++..+-.
T Consensus 68 ~~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~--v~~vd~~d~ 145 (403)
T PRK07810 68 GNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVE--TVFVDGEDL 145 (403)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcE--EEEECCCCH
Confidence 35556667777777777778888888887776655544555667776652 223333444455555542 555543322
Q ss_pred hHHHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCC-CcEEEEeCCCCCC
Q 023411 182 DSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRV-GGIIVIDNVLWHG 237 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~~g 237 (282)
+.+.... ...-.+|++..+. ......++.+.++ .+. |-.+++|+..-.+
T Consensus 146 ~~l~~ai----~~~tklV~~esp~Nptg~v~dl~~I~~l---a~~~g~~vivD~a~a~~ 197 (403)
T PRK07810 146 SQWEEAL----SVPTQAVFFETPSNPMQSLVDIAAVSEL---AHAAGAKVVLDNVFATP 197 (403)
T ss_pred HHHHHhc----CcCceEEEEECCCCCCCeecCHHHHHHH---HHHcCCEEEEECCCCcc
Confidence 3333322 2345788875442 1122235556555 444 4567788886444
No 405
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=83.40 E-value=15 Score=32.73 Aligned_cols=101 Identities=21% Similarity=0.216 Sum_probs=58.8
Q ss_pred HHhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE-cchhhHHHHHHhCC
Q 023411 114 LVQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNG 191 (282)
Q Consensus 114 l~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~l~~~~ 191 (282)
.....++.+||=.|+| .|..+..+++... +.++++++.+++..+.+++ .|.+.-+.... .+..+.+...
T Consensus 157 ~~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~---- 227 (338)
T PRK09422 157 VSGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK---- 227 (338)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh----
Confidence 3445677888888854 3455566666532 5789999999887776643 34422111100 1111222222
Q ss_pred CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
.+.+|.++.+... ...++.+.+. |+++|.++.
T Consensus 228 -~~~~d~vi~~~~~---~~~~~~~~~~---l~~~G~~v~ 259 (338)
T PRK09422 228 -TGGAHAAVVTAVA---KAAFNQAVDA---VRAGGRVVA 259 (338)
T ss_pred -cCCCcEEEEeCCC---HHHHHHHHHh---ccCCCEEEE
Confidence 2358877766543 2346777777 999998875
No 406
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=83.37 E-value=36 Score=31.16 Aligned_cols=121 Identities=10% Similarity=0.212 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADS 183 (282)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~~ 183 (282)
|....+-..++........+=.++|+......+ ..+.++.+|+..+..-. ........++..|. ++.++..+-.+.
T Consensus 52 pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~--~v~~vd~~d~~~ 128 (366)
T PRK08247 52 PTRGVLEQAIADLEGGDQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNV--RFVYVNTASLKA 128 (366)
T ss_pred chHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCc--eEEEECCCCHHH
Confidence 344444455555554445555666665555433 34454667776654322 23333444444553 244443221222
Q ss_pred HHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCC-CcEEEEeCCCC
Q 023411 184 LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRV-GGIIVIDNVLW 235 (282)
Q Consensus 184 l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~ 235 (282)
+.... ....++|++..+ +......++.+.++ .+. |..+|+|++..
T Consensus 129 l~~~i----~~~tklv~le~P~NP~~~~~dl~~I~~l---a~~~g~~lIvD~t~~ 176 (366)
T PRK08247 129 IEQAI----TPNTKAIFIETPTNPLMQETDIAAIAKI---AKKHGLLLIVDNTFY 176 (366)
T ss_pred HHHhc----ccCceEEEEECCCCCCCcHHHHHHHHHH---HHHcCCEEEEECCCc
Confidence 33222 235678887544 22233456666666 444 56778888863
No 407
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=83.26 E-value=17 Score=33.10 Aligned_cols=102 Identities=18% Similarity=0.271 Sum_probs=56.4
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc--chhhHHHHHHhCC
Q 023411 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNG 191 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~l~~~~ 191 (282)
....++.+||=.|+| .|..+..+++..+ ...+++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~--- 250 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT--- 250 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh---
Confidence 345567888888764 2334455666653 2258888888877666533 344322222222 2222222221
Q ss_pred CCCceeEEEEcCCccccHHHHHHHHHhhcCCC-CCcEEEEe
Q 023411 192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIR-VGGIIVID 231 (282)
Q Consensus 192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lk-pgG~lv~d 231 (282)
.+.+|+|+-.... ...+....+. |+ ++|.++.-
T Consensus 251 -~~~~d~vid~~g~---~~~~~~~~~~---l~~~~G~~v~~ 284 (365)
T cd05279 251 -DGGVDYAFEVIGS---ADTLKQALDA---TRLGGGTSVVV 284 (365)
T ss_pred -CCCCcEEEECCCC---HHHHHHHHHH---hccCCCEEEEE
Confidence 2568998843321 2345666777 88 99988863
No 408
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=83.07 E-value=7.8 Score=34.40 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=48.8
Q ss_pred CCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCce
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY 196 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~f 196 (282)
+++||-.|+ +|..+..+++.+- .+.+|++++.++.............+..++++++.+|..+. +..+ ...+
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-----~~~~ 77 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV-----VDGC 77 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-----HcCC
Confidence 457887764 7888888887763 34688888877654322222221122234689999998753 2333 2467
Q ss_pred eEEEEcCC
Q 023411 197 DFAFVDAE 204 (282)
Q Consensus 197 DlV~id~~ 204 (282)
|.||..+.
T Consensus 78 d~Vih~A~ 85 (322)
T PLN02662 78 EGVFHTAS 85 (322)
T ss_pred CEEEEeCC
Confidence 99987654
No 409
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=82.94 E-value=6.6 Score=38.36 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=56.0
Q ss_pred CEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
.+|+=+|| |..+..+++.+.+ +.+++.+|.+++..+.+++ . ....++||+.+. .-+.+. .-++.|.+
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~----g~~~i~GD~~~~-~~L~~a-~i~~a~~v 485 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R----GIRAVLGNAANE-EIMQLA-HLDCARWL 485 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C----CCeEEEcCCCCH-HHHHhc-CccccCEE
Confidence 45665555 6777778877643 4589999999987766653 1 268899998763 112111 14688877
Q ss_pred EEcCCccc-cHHHHHHHHHhhcCCCCCcEEEE
Q 023411 200 FVDAEKRM-YQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 200 ~id~~~~~-~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
++.-..+. .......+++ ..|...+++
T Consensus 486 iv~~~~~~~~~~iv~~~~~----~~~~~~iia 513 (558)
T PRK10669 486 LLTIPNGYEAGEIVASARE----KRPDIEIIA 513 (558)
T ss_pred EEEcCChHHHHHHHHHHHH----HCCCCeEEE
Confidence 76533222 2222333333 466666665
No 410
>PRK10458 DNA cytosine methylase; Provisional
Probab=82.90 E-value=27 Score=33.42 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=32.7
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHH
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY 164 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~ 164 (282)
.-+++|+-||.|++++-+-.. + .-.|.++|+++.+.+.-+.|+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHc
Confidence 348999999999999888654 2 235789999988776666654
No 411
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.66 E-value=6.4 Score=38.91 Aligned_cols=94 Identities=22% Similarity=0.181 Sum_probs=56.0
Q ss_pred CEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
.+|+=+| .|..+..+++.+. .+.+++.+|.|++.++.+++ .| ..++.||+.+. .-+...+ -++.|.+
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~-~~L~~ag-i~~A~~v 468 (601)
T PRK03659 401 PQVIIVG--FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG----YKVYYGDATQL-ELLRAAG-AEKAEAI 468 (601)
T ss_pred CCEEEec--CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCH-HHHHhcC-CccCCEE
Confidence 3565544 5677777777653 24589999999998876654 23 57889998753 2221112 4677887
Q ss_pred EEcCCccc-cHHHHHHHHHhhcCCCCCcEEEE
Q 023411 200 FVDAEKRM-YQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 200 ~id~~~~~-~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
++-.+... .......+++ +.|...+++
T Consensus 469 v~~~~d~~~n~~i~~~~r~----~~p~~~Iia 496 (601)
T PRK03659 469 VITCNEPEDTMKIVELCQQ----HFPHLHILA 496 (601)
T ss_pred EEEeCCHHHHHHHHHHHHH----HCCCCeEEE
Confidence 76544322 2222333333 567766665
No 412
>PRK06234 methionine gamma-lyase; Provisional
Probab=82.53 E-value=23 Score=33.02 Aligned_cols=128 Identities=11% Similarity=0.168 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
+|....+-..++.......++-+++|++.....+...+.++.+|+..+..-. ........++..|. ++.++..+-.+
T Consensus 63 ~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~vd~~d~e 140 (400)
T PRK06234 63 NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV--EVTFVDTSNLE 140 (400)
T ss_pred CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe--EEEEECCCCHH
Confidence 3445555555665555556777777777665555444555667766553221 22222333444443 24444322122
Q ss_pred HHHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411 183 SLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG 237 (282)
Q Consensus 183 ~l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g 237 (282)
.+.... ...-++|++..+. ......++.+.++++...+|-++++|+..-.+
T Consensus 141 ~l~~~i----~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~ 193 (400)
T PRK06234 141 EVRNAL----KANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTP 193 (400)
T ss_pred HHHHHh----ccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCch
Confidence 232222 2345788876441 11122255555551112236788889886544
No 413
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=82.47 E-value=11 Score=31.99 Aligned_cols=83 Identities=16% Similarity=0.041 Sum_probs=51.2
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh--------HHHHHH
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--------SLKALI 188 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--------~l~~l~ 188 (282)
.++++||=.|+ +|..+..+++.+. .+.+|++++.+++..+...+.++..+. .++.++.+|..+ ....+.
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHHH
Confidence 36678898884 6777777776653 256999999988766555555554432 246677666531 111121
Q ss_pred hCCCCCceeEEEEcCC
Q 023411 189 LNGEASSYDFAFVDAE 204 (282)
Q Consensus 189 ~~~~~~~fDlV~id~~ 204 (282)
+. .+++|.|+..+.
T Consensus 88 ~~--~~~id~vi~~Ag 101 (247)
T PRK08945 88 EQ--FGRLDGVLHNAG 101 (247)
T ss_pred HH--hCCCCEEEECCc
Confidence 11 257899987643
No 414
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.33 E-value=17 Score=32.45 Aligned_cols=82 Identities=20% Similarity=0.162 Sum_probs=55.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhC--CCC
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA 193 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~--~~~ 193 (282)
.++.||=-|.|+|. +..++..+ ..+++++..|++++..+...+.++..| ++....+|..+. +....++ .+-
T Consensus 37 ~g~~vLITGgg~Gl-Gr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGL-GRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchH-HHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 56788888888775 44444333 235789999999999988888888776 577788777543 2222211 124
Q ss_pred CceeEEEEcCC
Q 023411 194 SSYDFAFVDAE 204 (282)
Q Consensus 194 ~~fDlV~id~~ 204 (282)
+..|+++.++.
T Consensus 113 G~V~ILVNNAG 123 (300)
T KOG1201|consen 113 GDVDILVNNAG 123 (300)
T ss_pred CCceEEEeccc
Confidence 78899987755
No 415
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=82.30 E-value=18 Score=30.83 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=45.3
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCc-------------------cHHHHHHHHHHHhCCCCcEEEEEc
Q 023411 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHG 178 (282)
Q Consensus 119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~g~~~~v~~~~g 178 (282)
...+|+=+|||. |......+...+ -++++.+|.+. .-.+.+++.++..+..-+++.+..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 345899999973 444333333333 36888886433 234556666666554434666655
Q ss_pred chh-hHHHHHHhCCCCCceeEEEEcCC
Q 023411 179 LAA-DSLKALILNGEASSYDFAFVDAE 204 (282)
Q Consensus 179 d~~-~~l~~l~~~~~~~~fDlV~id~~ 204 (282)
... +....+ -..+|+|+...+
T Consensus 99 ~i~~~~~~~~-----~~~~DvVi~~~d 120 (228)
T cd00757 99 RLDAENAEEL-----IAGYDLVLDCTD 120 (228)
T ss_pred eeCHHHHHHH-----HhCCCEEEEcCC
Confidence 442 222333 256999997655
No 416
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=82.30 E-value=19 Score=32.02 Aligned_cols=97 Identities=12% Similarity=0.094 Sum_probs=52.2
Q ss_pred CCCEEEEE--cc-cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 119 GAQRCIEV--GV-YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 119 ~~~~VLEI--G~-G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
.+..++=+ |+ +.|..+..+++.. +.++++++.+++..+.+++ .|.+.-+.....+..+.+.... ....
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~---~~~~ 212 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI---AKLN 212 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh---CCCC
Confidence 34445444 33 3455666677765 4789999998877766654 3443212211122222222221 1246
Q ss_pred eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+|++|-..... ......+. ++++|.++.-
T Consensus 213 ~d~vid~~g~~----~~~~~~~~---l~~~G~~v~~ 241 (324)
T cd08291 213 ATIFFDAVGGG----LTGQILLA---MPYGSTLYVY 241 (324)
T ss_pred CcEEEECCCcH----HHHHHHHh---hCCCCEEEEE
Confidence 89888433322 13344566 8999987763
No 417
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.13 E-value=13 Score=35.03 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=47.6
Q ss_pred EEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411 122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~ 200 (282)
+|+=+|+ |..+..+++.+.. +..|+.+|.+++.++.+++.. .+.++.||+.+.. .+...+ -..+|.|+
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~-~l~~~~-~~~a~~vi 70 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPD-VLREAG-AEDADLLI 70 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHH-HHHHcC-CCcCCEEE
Confidence 5666665 7888888887642 468999999998766554321 2788889886531 221111 36788888
Q ss_pred EcCCc
Q 023411 201 VDAEK 205 (282)
Q Consensus 201 id~~~ 205 (282)
+....
T Consensus 71 ~~~~~ 75 (453)
T PRK09496 71 AVTDS 75 (453)
T ss_pred EecCC
Confidence 76543
No 418
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=82.13 E-value=5.1 Score=32.53 Aligned_cols=100 Identities=12% Similarity=0.143 Sum_probs=51.7
Q ss_pred CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcE-EEEEcchhhHHHHHHhCCCCCceeE
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV-KIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v-~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
+++++-+|+..-..-.....+ + ..++++||.++--+. +. ..+++ ++...|........ .++||+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-G-A~~iltveyn~L~i~---~~-----~~dr~ssi~p~df~~~~~~y-----~~~fD~ 66 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-G-AAKILTVEYNKLEIQ---EE-----FRDRLSSILPVDFAKNWQKY-----AGSFDF 66 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-C-CceEEEEeecccccC---cc-----cccccccccHHHHHHHHHHh-----hccchh
Confidence 467888888755443333332 2 468999998753211 11 11222 22223333222222 578999
Q ss_pred EEEcCC-----------ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411 199 AFVDAE-----------KRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234 (282)
Q Consensus 199 V~id~~-----------~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~ 234 (282)
+.+-+. +-+....++.+.++..+|||||.+++.=.+
T Consensus 67 ~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPv 113 (177)
T PF03269_consen 67 AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPV 113 (177)
T ss_pred hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeec
Confidence 765322 112222334444444449999999986444
No 419
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.01 E-value=6.8 Score=36.88 Aligned_cols=75 Identities=20% Similarity=0.168 Sum_probs=49.7
Q ss_pred CCEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl 198 (282)
.++|+=+|+ |..+..+++.+.. +..|+.+|.+++..+..++.. ..+.++.||+.+. ..+... .-..+|.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~-~~L~~~-~~~~a~~ 300 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQ-ELLEEE-GIDEADA 300 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCH-HHHHhc-CCccCCE
Confidence 567887776 6777777777643 568999999998776655432 1367899998653 222111 1467888
Q ss_pred EEEcCC
Q 023411 199 AFVDAE 204 (282)
Q Consensus 199 V~id~~ 204 (282)
|++-..
T Consensus 301 vi~~~~ 306 (453)
T PRK09496 301 FIALTN 306 (453)
T ss_pred EEECCC
Confidence 887544
No 420
>PRK08324 short chain dehydrogenase; Validated
Probab=81.88 E-value=16 Score=36.60 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=50.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CC
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA 193 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~ 193 (282)
.+++||-.|+ +|.++..+++.+. .+.+|+.+|.+++.++.+.+.+... .++.++.+|..+. +....... ..
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 3468887775 4556666665542 3578999999987766555544322 3588888887542 11111100 02
Q ss_pred CceeEEEEcCC
Q 023411 194 SSYDFAFVDAE 204 (282)
Q Consensus 194 ~~fDlV~id~~ 204 (282)
+.+|+||..+.
T Consensus 497 g~iDvvI~~AG 507 (681)
T PRK08324 497 GGVDIVVSNAG 507 (681)
T ss_pred CCCCEEEECCC
Confidence 57899988655
No 421
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=81.68 E-value=27 Score=32.43 Aligned_cols=124 Identities=17% Similarity=0.183 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADS 183 (282)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~~ 183 (282)
|....+-..++.......++=.++|++.+...+...+.++.+|+..+..-. ............+. .+.++...-.+.
T Consensus 52 pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi--~v~~vd~~d~e~ 129 (386)
T PRK08045 52 PTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY--RVLFVDQGDEQA 129 (386)
T ss_pred ccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe--EEEEeCCCCHHH
Confidence 334444455555444445666666666665555544555667776664332 23333333332221 244432211122
Q ss_pred HHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCC-CcEEEEeCCCCCC
Q 023411 184 LKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRV-GGIIVIDNVLWHG 237 (282)
Q Consensus 184 l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~~g 237 (282)
+.... ..+.++|++..+. ......++.+.++ .+. |.++++|+....+
T Consensus 130 l~~~l----~~~tklV~l~sP~NPtG~v~di~~I~~i---a~~~g~~vivDeay~~~ 179 (386)
T PRK08045 130 LRAAL----AEKPKLVLVESPSNPLLRVVDIAKICHL---AREAGAVSVVDNTFLSP 179 (386)
T ss_pred HHHhc----ccCCeEEEEECCCCCCCEecCHHHHHHH---HHHcCCEEEEECCCCcc
Confidence 22221 2355788876442 1111224555555 443 6678888886554
No 422
>PRK05967 cystathionine beta-lyase; Provisional
Probab=81.65 E-value=33 Score=32.06 Aligned_cols=122 Identities=13% Similarity=0.154 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccH-HHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS-LEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~-~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
+|....+-..++....+...+=+.+|.+.+...+...+.++.+|+..+..-.. ....++..+..|. +++++..+..+
T Consensus 63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e 140 (395)
T PRK05967 63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGA 140 (395)
T ss_pred ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHH
Confidence 44444444444444444445667777777766665556666777776543322 2233455555554 35665433223
Q ss_pred HHHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCC-CcEEEEeCCC
Q 023411 183 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRV-GGIIVIDNVL 234 (282)
Q Consensus 183 ~l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~ 234 (282)
.+.... .....+|++..+ +......++.+.++ .+. |.++++|++.
T Consensus 141 ~l~~al----~~~TklV~lesPsNP~l~v~dl~~I~~l---a~~~g~~vvVD~t~ 188 (395)
T PRK05967 141 GIAKLM----RPNTKVVHTEAPGSNTFEMQDIPAIAEA---AHRHGAIVMMDNTW 188 (395)
T ss_pred HHHHhc----CcCceEEEEECCCCCCCcHHHHHHHHHH---HHHhCCEEEEECCc
Confidence 333332 244578888754 23344456667666 554 4567777775
No 423
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=81.62 E-value=14 Score=33.54 Aligned_cols=99 Identities=23% Similarity=0.359 Sum_probs=54.5
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 117 ~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
..++.+||-.|+| .|..+..+++..+ .+ +++++.+++..+.+++ .|...-+.....+..+.+.... ...
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G--~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~---~~~ 255 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFG--ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT---GGR 255 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh---CCC
Confidence 3566778766654 4555566676653 55 8999888776655532 3432111111112222222221 135
Q ss_pred ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
.+|+|+-..... .....+.++ |+++|.++.
T Consensus 256 ~~d~vld~vg~~---~~~~~~~~~---l~~~G~~v~ 285 (367)
T cd08263 256 GVDVVVEALGKP---ETFKLALDV---VRDGGRAVV 285 (367)
T ss_pred CCCEEEEeCCCH---HHHHHHHHH---HhcCCEEEE
Confidence 699998433222 245667777 999998875
No 424
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=81.56 E-value=3.4 Score=30.14 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=37.9
Q ss_pred CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC---CCCcc-------cCCcCCChhhHHHHHHHHHhhhC
Q 023411 193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL---WHGKV-------ADQMVNDAKTISIRNFNKNLMED 262 (282)
Q Consensus 193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~---~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~ 262 (282)
...+|++++|....-.++.+..+... ++-||++++=-.- |+... ..+...+.....++.|.+.+.++
T Consensus 9 G~e~~~~i~d~~~g~~pnal~a~~gt---v~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~~~~~~F~~rf~~~L~~~ 85 (92)
T PF08351_consen 9 GQEFDLLIFDAFEGFDPNALAALAGT---VRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYTDVTPRFIRRFIRSLQSD 85 (92)
T ss_dssp T--BSSEEEE-SS---HHHHHHHHTT---B-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS-B--HHHHHHHHHHHCCS
T ss_pred CCccCEEEEEccCCCCHHHHHHHhcc---eecCeEEEEEcCCHHHhhhcchHHHhccccCCCCcccHHHHHHHHHHHHHC
Confidence 47899999999877777877777777 9999988773221 22211 11111222344677888888888
Q ss_pred CCeEE
Q 023411 263 ERVSI 267 (282)
Q Consensus 263 ~~~~~ 267 (282)
+++..
T Consensus 86 ~~i~i 90 (92)
T PF08351_consen 86 PGIII 90 (92)
T ss_dssp TTS--
T ss_pred cCCcc
Confidence 77643
No 425
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=81.34 E-value=27 Score=31.22 Aligned_cols=100 Identities=18% Similarity=0.219 Sum_probs=54.6
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 117 ~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
..++.+|+-.|+| .|..+..+++.. +.+ |++++.+++..+.+++ .|...-+.....+..+.+..+. ...
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~---~~~ 229 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT---DGE 229 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc---CCC
Confidence 3456677666654 355566677765 354 8888777665544433 3442212222223323222221 135
Q ss_pred ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
.+|+++-..... ..+..+.+. |+++|.++.-
T Consensus 230 ~~d~vld~~g~~---~~~~~~~~~---l~~~g~~v~~ 260 (340)
T TIGR00692 230 GVDVFLEMSGAP---KALEQGLQA---VTPGGRVSLL 260 (340)
T ss_pred CCCEEEECCCCH---HHHHHHHHh---hcCCCEEEEE
Confidence 689998653322 345667777 9999987763
No 426
>PLN02494 adenosylhomocysteinase
Probab=81.28 E-value=28 Score=33.35 Aligned_cols=88 Identities=13% Similarity=0.084 Sum_probs=51.6
Q ss_pred cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
..+++|+-+|+|. |......++.+ +.+|+.+|.++.....+.. .|. .+. +..+.+ ...
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEal---------~~A 310 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGY----QVL--TLEDVV---------SEA 310 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCC----eec--cHHHHH---------hhC
Confidence 3578999999873 44444455544 4799999999865433321 222 221 222221 356
Q ss_pred eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
|+|+......+. ........ +|+|++|+--
T Consensus 311 DVVI~tTGt~~v--I~~e~L~~---MK~GAiLiNv 340 (477)
T PLN02494 311 DIFVTTTGNKDI--IMVDHMRK---MKNNAIVCNI 340 (477)
T ss_pred CEEEECCCCccc--hHHHHHhc---CCCCCEEEEc
Confidence 999874443322 12445566 8999998873
No 427
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=81.28 E-value=22 Score=31.80 Aligned_cols=101 Identities=24% Similarity=0.333 Sum_probs=57.5
Q ss_pred HHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC
Q 023411 114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (282)
Q Consensus 114 l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~ 191 (282)
.+...++.+||-.|+|. |..+..+++..+ .+ +++++.+++..+.++ ..|...-+...... .+.+....
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G--~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~-~~~~~~~~--- 223 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILG--AKRVIAVDIDDEKLAVAR----ELGADDTINPKEED-VEKVRELT--- 223 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHH----HcCCCEEecCcccc-HHHHHHHh---
Confidence 34455677888888754 667777787764 54 899988876655443 33432111111111 12222221
Q ss_pred CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
....+|++|-.... ...+..+.+. |+++|.++.
T Consensus 224 ~~~~~d~vld~~g~---~~~~~~~~~~---l~~~G~~v~ 256 (343)
T cd08236 224 EGRGADLVIEAAGS---PATIEQALAL---ARPGGKVVL 256 (343)
T ss_pred CCCCCCEEEECCCC---HHHHHHHHHH---hhcCCEEEE
Confidence 12459999854322 2345667777 999998775
No 428
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=81.12 E-value=3.6 Score=35.87 Aligned_cols=106 Identities=19% Similarity=0.174 Sum_probs=65.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCC-----------CCEEEEEecCccHHHHHH-------------HHHH---------
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPE-----------SGCLVACERDARSLEVAK-------------KYYE--------- 165 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~-----------~~~v~~iD~s~~~~~~a~-------------~~~~--------- 165 (282)
+.-.|+|+|-|+|...+..-+.+++ .-++++++.+|-...... +..+
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 3447999999999988777665532 125889998774322111 1111
Q ss_pred ----HhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc-----cc-cHHHHHHHHHhhcCCCCCcEEEE
Q 023411 166 ----RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RM-YQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 166 ----~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~-----~~-~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
..| .-..++..||+.+.++...... .++|..|.|+-. +. ..+++..+.+. .++||.+.-
T Consensus 138 ~r~~~~g-~~~l~l~~gd~~~~~p~~~~~~--~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~---~~~~~~l~t 206 (252)
T COG4121 138 AAAVRHG-LLLLGLVIGDAGDGIPPVPRRR--PGTDAWFLDGFRPVKNPEMWEDELLNLMARI---PYRDPTLAT 206 (252)
T ss_pred HHhhhcc-hheeeeeeeehhhcCCcccccc--cCccEEecCCccccCChhhccHHHHHHHHhh---cCCCCceec
Confidence 112 1246778888887766652111 179999999752 11 24466777776 999998765
No 429
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=81.08 E-value=6.4 Score=39.09 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=46.1
Q ss_pred CEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
.+|+=+|+ |..+..+++.+.. +-.++.+|.|++.++.+++ .| ..++.||+.+. .-+...+ -++.|.+
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~-~~L~~ag-i~~A~~v 468 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRM-DLLESAG-AAKAEVL 468 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCH-HHHHhcC-CCcCCEE
Confidence 56776666 5566666665432 3579999999998877754 22 57889998763 1222112 4678887
Q ss_pred EEcCC
Q 023411 200 FVDAE 204 (282)
Q Consensus 200 ~id~~ 204 (282)
++.-+
T Consensus 469 vv~~~ 473 (621)
T PRK03562 469 INAID 473 (621)
T ss_pred EEEeC
Confidence 76544
No 430
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=81.08 E-value=30 Score=32.15 Aligned_cols=126 Identities=16% Similarity=0.179 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
+|....+-..++....+..++=..+|+..+...+...+.++.+|+..+..-. ............|. ++.++...-.+
T Consensus 52 npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi--~v~~vd~~d~e 129 (388)
T PRK08861 52 NPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDF--KVQFVDQSDAA 129 (388)
T ss_pred CchHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence 4455556666666666778887777777766666554555566666543322 12222232322222 23333221112
Q ss_pred HHHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCC-CCcEEEEeCCCCCCc
Q 023411 183 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIR-VGGIIVIDNVLWHGK 238 (282)
Q Consensus 183 ~l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~Lk-pgG~lv~dd~~~~g~ 238 (282)
.+.... ...-++|++..+ +......++.+.++ .+ .|.++++|+..-.+.
T Consensus 130 ~l~~~i----~~~tklV~lesP~NPtG~v~dl~~I~~l---a~~~gi~vIvDea~~~~~ 181 (388)
T PRK08861 130 ALDAAL----AKKPKLILLETPSNPLVRVVDIAELCQK---AKAVGALVAVDNTFLTPV 181 (388)
T ss_pred HHHHhc----CcCCeEEEEECCCCCCCcccCHHHHHHH---HHHcCCEEEEECCccccc
Confidence 222221 245688887544 11111123445554 33 356788888875553
No 431
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=80.79 E-value=11 Score=27.56 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=42.7
Q ss_pred CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~ 200 (282)
++|| +-||+|.+|-.++..+ ++.+++.|++ +++...+..+.... ...+|+|+
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k~-------------------~~~~~~~gi~--~~v~a~~~~~~~~~------~~~~Dvil 55 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNKM-------------------NKAAEEYGVP--VKIAAGSYGAAGEK------LDDADVVL 55 (95)
T ss_pred cEEE-EECCCchhHHHHHHHH-------------------HHHHHHCCCc--EEEEEecHHHHHhh------cCCCCEEE
Confidence 4677 6689998776666432 4555666765 77777777654332 35789999
Q ss_pred EcCCccccHHHHHHHHHh
Q 023411 201 VDAEKRMYQEYFELLLQL 218 (282)
Q Consensus 201 id~~~~~~~~~l~~~~~~ 218 (282)
+.+...+ .++.+.+.
T Consensus 56 l~pqi~~---~~~~i~~~ 70 (95)
T TIGR00853 56 LAPQVAY---MLPDLKKE 70 (95)
T ss_pred ECchHHH---HHHHHHHH
Confidence 8766443 34555555
No 432
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=80.76 E-value=2.3 Score=37.21 Aligned_cols=73 Identities=19% Similarity=0.303 Sum_probs=43.6
Q ss_pred HHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHH
Q 023411 134 SLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFE 213 (282)
Q Consensus 134 t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~ 213 (282)
+..+.+..+ ..+|+++|.+++.++.|.+ .|..+.. ..+ ...+ ..+|+|++..+.......++
T Consensus 2 A~aL~~~g~-~~~v~g~d~~~~~~~~a~~----~g~~~~~---~~~----~~~~------~~~DlvvlavP~~~~~~~l~ 63 (258)
T PF02153_consen 2 ALALRKAGP-DVEVYGYDRDPETLEAALE----LGIIDEA---STD----IEAV------EDADLVVLAVPVSAIEDVLE 63 (258)
T ss_dssp HHHHHHTTT-TSEEEEE-SSHHHHHHHHH----TTSSSEE---ESH----HHHG------GCCSEEEE-S-HHHHHHHHH
T ss_pred hHHHHhCCC-CeEEEEEeCCHHHHHHHHH----CCCeeec---cCC----HhHh------cCCCEEEEcCCHHHHHHHHH
Confidence 344555432 5799999999987766543 3443321 111 1222 45699999888888888888
Q ss_pred HHHHhhcCCCCCcE
Q 023411 214 LLLQLLLQIRVGGI 227 (282)
Q Consensus 214 ~~~~~~~~LkpgG~ 227 (282)
.+.+. +++|++
T Consensus 64 ~~~~~---~~~~~i 74 (258)
T PF02153_consen 64 EIAPY---LKPGAI 74 (258)
T ss_dssp HHHCG---S-TTSE
T ss_pred Hhhhh---cCCCcE
Confidence 88887 777644
No 433
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=80.64 E-value=5.9 Score=35.53 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=26.1
Q ss_pred CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
...+|+||+........+.++.+.++ +.+++.++.
T Consensus 70 ~~~~D~vilavK~~~~~~~~~~l~~~---~~~~~~iv~ 104 (313)
T PRK06249 70 MPPCDWVLVGLKTTANALLAPLIPQV---AAPDAKVLL 104 (313)
T ss_pred cCCCCEEEEEecCCChHhHHHHHhhh---cCCCCEEEE
Confidence 36799999876655566677788887 888887653
No 434
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=80.55 E-value=19 Score=32.13 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=52.1
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.+++|+=||+|. |......+..+ +++|+.+|.+++..+.+ ...|. +++ +. +.+... -..+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~----~~~G~----~~~--~~-~~l~~~-----l~~aD 212 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARI----TEMGL----SPF--HL-SELAEE-----VGKID 212 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHH----HHcCC----eee--cH-HHHHHH-----hCCCC
Confidence 578999999864 22333344443 47999999997654433 23332 222 11 222232 25789
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
+||...+... .-+...+. ++||++ ++|-...+|.
T Consensus 213 iVI~t~p~~~---i~~~~l~~---~~~g~v-IIDla~~pgg 246 (296)
T PRK08306 213 IIFNTIPALV---LTKEVLSK---MPPEAL-IIDLASKPGG 246 (296)
T ss_pred EEEECCChhh---hhHHHHHc---CCCCcE-EEEEccCCCC
Confidence 9998643221 12334445 788664 5554554444
No 435
>PRK06940 short chain dehydrogenase; Provisional
Probab=80.52 E-value=22 Score=30.90 Aligned_cols=79 Identities=20% Similarity=0.162 Sum_probs=50.4
Q ss_pred EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhC-CCCCceeE
Q 023411 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN-GEASSYDF 198 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~-~~~~~fDl 198 (282)
.+|=.|+ |.++..+++.+..+.+|+.++.+++.++...+.++..+ .++.++.+|..+. ...+... ...+.+|.
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4555564 57888888888656899999998776655555554433 3577888887552 1222111 01367899
Q ss_pred EEEcCC
Q 023411 199 AFVDAE 204 (282)
Q Consensus 199 V~id~~ 204 (282)
++..+.
T Consensus 80 li~nAG 85 (275)
T PRK06940 80 LVHTAG 85 (275)
T ss_pred EEECCC
Confidence 988765
No 436
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=80.52 E-value=9.9 Score=33.49 Aligned_cols=87 Identities=17% Similarity=0.102 Sum_probs=48.2
Q ss_pred EEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411 122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~ 200 (282)
+|.=||+| ..+..++..+. .+.+|+++|.+++.++.+.+. |. +.....+. .. ....|+||
T Consensus 2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~----~~------~~~aDlVi 62 (279)
T PRK07417 2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GL---VDEASTDL----SL------LKDCDLVI 62 (279)
T ss_pred eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CC---cccccCCH----hH------hcCCCEEE
Confidence 45557765 44444444332 145899999998876655432 22 11111111 11 24568888
Q ss_pred EcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 201 VDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 201 id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
+..+.......++.+.+. ++++. ++.|
T Consensus 63 lavp~~~~~~~~~~l~~~---l~~~~-ii~d 89 (279)
T PRK07417 63 LALPIGLLLPPSEQLIPA---LPPEA-IVTD 89 (279)
T ss_pred EcCCHHHHHHHHHHHHHh---CCCCc-EEEe
Confidence 877766666666777666 76653 3443
No 437
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.24 E-value=20 Score=31.65 Aligned_cols=95 Identities=13% Similarity=0.131 Sum_probs=52.1
Q ss_pred CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh--------CCC---------CcEEEEEcchhhH
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--------GVS---------HKVKIKHGLAADS 183 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--------g~~---------~~v~~~~gd~~~~ 183 (282)
.+|.=||+|.=..++...-... +.+|+.+|.+++.++.+++.++.. .+. .++++. .|..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~-- 79 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLA-- 79 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHH--
Confidence 4677788875333332222212 468999999999888877654321 110 123322 2221
Q ss_pred HHHHHhCCCCCceeEEEEcCCcc--ccHHHHHHHHHhhcCCCCCcEEE
Q 023411 184 LKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLLLQIRVGGIIV 229 (282)
Q Consensus 184 l~~l~~~~~~~~fDlV~id~~~~--~~~~~l~~~~~~~~~LkpgG~lv 229 (282)
.. -..-|+||...+.. .....++.+.+. ++++.+|+
T Consensus 80 --~a-----~~~aDlVieavpe~~~~k~~~~~~l~~~---~~~~~ii~ 117 (287)
T PRK08293 80 --EA-----VKDADLVIEAVPEDPEIKGDFYEELAKV---APEKTIFA 117 (287)
T ss_pred --HH-----hcCCCEEEEeccCCHHHHHHHHHHHHhh---CCCCCEEE
Confidence 11 24568888765522 344566777776 76666543
No 438
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=80.16 E-value=18 Score=33.57 Aligned_cols=122 Identities=16% Similarity=0.174 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHH-HHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSL-EVAKKYYERAGVSHKVKIKHGLAADS 183 (282)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~-~~a~~~~~~~g~~~~v~~~~gd~~~~ 183 (282)
|....+-..++.......++-.++|+......+...+.++.+|+..+..-... ...+. +...|. ++.+...|. +.
T Consensus 53 p~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~-~~~~g~--~v~~~~~d~-~~ 128 (385)
T PRK08574 53 PTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKS-LEKFGV--KVVLAYPST-ED 128 (385)
T ss_pred ccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHH-hhccCc--EEEEECCCH-HH
Confidence 33444444555555555677677777666655555565566676655433222 22222 233333 244443343 22
Q ss_pred HHHHHhCCCCC-ceeEEEEcCCcc--ccHHHHHHHHHhhcCCCC-CcEEEEeCCCCCC
Q 023411 184 LKALILNGEAS-SYDFAFVDAEKR--MYQEYFELLLQLLLQIRV-GGIIVIDNVLWHG 237 (282)
Q Consensus 184 l~~l~~~~~~~-~fDlV~id~~~~--~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~~g 237 (282)
+.... .. +.++|++..... .....++.+.++ .+. |..+++|+..-.+
T Consensus 129 l~~~i----~~~~tklV~ie~p~NPtG~v~dl~~I~~l---a~~~gi~livD~t~a~~ 179 (385)
T PRK08574 129 IIEAI----KEGRTKLVFIETMTNPTLKVIDVPEVAKA---AKELGAILVVDNTFATP 179 (385)
T ss_pred HHHhc----CccCceEEEEECCCCCCCEecCHHHHHHH---HHHcCCEEEEECCCCcc
Confidence 33222 23 568888764421 111224555555 444 5567778875333
No 439
>PRK08251 short chain dehydrogenase; Provisional
Probab=80.13 E-value=18 Score=30.56 Aligned_cols=83 Identities=19% Similarity=0.119 Sum_probs=52.1
Q ss_pred CEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHHhC--CCCCc
Q 023411 121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILN--GEASS 195 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~l~~~--~~~~~ 195 (282)
+++|-.| |+|..+..+++.+. .+.+|+.++.+++..+...+.+.......++.++.+|..+.. .....+ ...+.
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4677777 46778888777763 246899999988777666555544322345888888876531 111110 01357
Q ss_pred eeEEEEcCC
Q 023411 196 YDFAFVDAE 204 (282)
Q Consensus 196 fDlV~id~~ 204 (282)
.|.+|..+.
T Consensus 82 id~vi~~ag 90 (248)
T PRK08251 82 LDRVIVNAG 90 (248)
T ss_pred CCEEEECCC
Confidence 899988654
No 440
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=79.89 E-value=46 Score=30.00 Aligned_cols=77 Identities=17% Similarity=0.069 Sum_probs=43.1
Q ss_pred cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHH-HHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLE-VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~-~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
+.+.+|.=||+|. |....+.+...+-..+++-+|++++.+. .+.+.........++.+..++.. .+ ..
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~----~~------~~ 73 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYS----DC------KD 73 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHH----Hh------CC
Confidence 3556899999976 5444443333331247999999887643 33333322222234555544432 22 56
Q ss_pred eeEEEEcCC
Q 023411 196 YDFAFVDAE 204 (282)
Q Consensus 196 fDlV~id~~ 204 (282)
.|+|++.+.
T Consensus 74 adivIitag 82 (315)
T PRK00066 74 ADLVVITAG 82 (315)
T ss_pred CCEEEEecC
Confidence 699887654
No 441
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=79.70 E-value=26 Score=33.63 Aligned_cols=104 Identities=9% Similarity=0.061 Sum_probs=54.5
Q ss_pred EEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHH---HhCCC--------CcEEEEEcchhhHHHHHHh
Q 023411 122 RCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYE---RAGVS--------HKVKIKHGLAADSLKALIL 189 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~---~~g~~--------~~v~~~~gd~~~~l~~l~~ 189 (282)
+|.-||+|..+.+...+-+- +.+.+|+++|++++.++..++... +.++. .+.++. .|..+ .
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~~---~--- 75 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVEK---H--- 75 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHHH---H---
Confidence 57778876555443322221 113679999999988766443210 00000 011111 11111 1
Q ss_pred CCCCCceeEEEEcCC------------ccc---cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 190 NGEASSYDFAFVDAE------------KRM---YQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 190 ~~~~~~fDlV~id~~------------~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
-..-|++|+.-+ ..+ .....+.+.+. |++|-++|+.....+|+
T Consensus 76 ---i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~---l~~~~lVv~~STvp~Gt 133 (473)
T PLN02353 76 ---VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADV---SKSDKIVVEKSTVPVKT 133 (473)
T ss_pred ---HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhh---CCCCcEEEEeCCCCCCh
Confidence 134588876422 112 22334444454 99999999999988887
No 442
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=79.67 E-value=5.2 Score=28.09 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=21.5
Q ss_pred cCCCEEEEEcccccHH-HHHHHHHCCCCCEEEEEecC
Q 023411 118 LGAQRCIEVGVYTGYS-SLAIALVLPESGCLVACERD 153 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~-t~~la~~~~~~~~v~~iD~s 153 (282)
..+++||-||+-+|+- +..++..+.-++..++|-.+
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 4678999999999984 34455555546777777553
No 443
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=79.59 E-value=4.6 Score=37.52 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=36.8
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHH
Q 023411 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY 163 (282)
Q Consensus 110 ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~ 163 (282)
.......+.+.++||-|.+| |..++.++..-| .+|++||+||......+=.
T Consensus 26 vD~~aL~i~~~d~vl~ItSa-G~N~L~yL~~~P--~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 26 VDMEALNIGPDDRVLTITSA-GCNALDYLLAGP--KRIHAVDLNPAQNALLELK 76 (380)
T ss_pred HHHHHhCCCCCCeEEEEccC-CchHHHHHhcCC--ceEEEEeCCHHHHHHHHHH
Confidence 45566677788899999665 555665555444 7999999999877665433
No 444
>PRK08064 cystathionine beta-lyase; Provisional
Probab=79.56 E-value=30 Score=32.14 Aligned_cols=124 Identities=12% Similarity=0.192 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
+|....+-..++...+....+=+++|++.....+. .+.++.+|+..+..-. ......+.++..|.. +.++..+-.+
T Consensus 53 ~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~--v~~v~~~d~~ 129 (390)
T PRK08064 53 NPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIE--HTFVDMTNLE 129 (390)
T ss_pred ChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCE--EEEECCCCHH
Confidence 44444555555554444444446766665544443 4555667777664222 333334444555542 4554432222
Q ss_pred HHHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCC-CcEEEEeCCCCCC
Q 023411 183 SLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRV-GGIIVIDNVLWHG 237 (282)
Q Consensus 183 ~l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~~g 237 (282)
.+.... ..+-.+|++..+. ......++.+.++ .+. |..+++|+..-.+
T Consensus 130 ~l~~~l----~~~tklV~l~~p~NptG~~~dl~~I~~l---a~~~g~~vvvD~a~~~~ 180 (390)
T PRK08064 130 EVAQNI----KPNTKLFYVETPSNPLLKVTDIRGVVKL---AKAIGCLTFVDNTFLTP 180 (390)
T ss_pred HHHHhc----CCCceEEEEECCCCCCcEeccHHHHHHH---HHHcCCEEEEECCCCcc
Confidence 232221 2455788876542 1122234555555 333 5677888875433
No 445
>PRK07671 cystathionine beta-lyase; Provisional
Probab=79.53 E-value=25 Score=32.43 Aligned_cols=123 Identities=11% Similarity=0.211 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
+|....+-..++........+=+|+|.+.....+. .+.++.+|+..+..-. ......+.+...|. .+.++..+-.+
T Consensus 49 ~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~-~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~ 125 (377)
T PRK07671 49 NPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM-LFSSGDHVILTDDVYGGTYRVMTKVLNRFGI--EHTFVDTSNLE 125 (377)
T ss_pred ChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH-HhCCCCEEEECCCccchHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence 44455555555555544455557887766554433 4454667877664322 33333344444443 24444332222
Q ss_pred HHHHHHhCCCCCceeEEEEcCCcc--ccHHHHHHHHHhhcCCCC-CcEEEEeCCCCC
Q 023411 183 SLKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLLLQIRV-GGIIVIDNVLWH 236 (282)
Q Consensus 183 ~l~~l~~~~~~~~fDlV~id~~~~--~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~~ 236 (282)
.+.... .....+|++..+.. .....++.+.++ .+. |..+++|+....
T Consensus 126 ~l~~ai----~~~tklV~le~P~NPtg~~~dl~~I~~l---a~~~g~~lvvD~a~~~ 175 (377)
T PRK07671 126 EVEEAI----RPNTKAIYVETPTNPLLKITDIKKISTI---AKEKGLLTIVDNTFMT 175 (377)
T ss_pred HHHHhc----CCCCeEEEEECCCCCCCcccCHHHHHHH---HHHcCCEEEEECCCCc
Confidence 233222 23457888754411 122335555555 443 567788887543
No 446
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=79.47 E-value=23 Score=31.43 Aligned_cols=100 Identities=17% Similarity=0.248 Sum_probs=58.1
Q ss_pred HHhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC
Q 023411 114 LVQILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (282)
Q Consensus 114 l~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~ 191 (282)
.++..++.+||-+|+| .|..+..+++.. +.+ ++.++.+++..+.+++ .+.. .++..+..+.... . ..
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~-~-~~ 222 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQ-K-ED 222 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHH-H-Hh
Confidence 3455677899988865 355666677765 355 8888888877665533 3432 2222221111111 1 11
Q ss_pred CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
....+|++|..... ...+....+. |+++|.++.
T Consensus 223 ~~~~vd~v~~~~~~---~~~~~~~~~~---l~~~G~~v~ 255 (334)
T cd08234 223 NPYGFDVVIEATGV---PKTLEQAIEY---ARRGGTVLV 255 (334)
T ss_pred cCCCCcEEEECCCC---hHHHHHHHHH---HhcCCEEEE
Confidence 14679999864332 2345666777 899998875
No 447
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=79.46 E-value=10 Score=33.60 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=27.2
Q ss_pred CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEE-EeC
Q 023411 194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIV-IDN 232 (282)
Q Consensus 194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv-~dd 232 (282)
..+|+||+..........++.+.+. +.++.+++ +.|
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~---~~~~~~ii~~~n 103 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPL---VGEDTVIIPLQN 103 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhh---cCCCCEEEEeeC
Confidence 6789999887766677778888887 88887665 344
No 448
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=79.20 E-value=22 Score=31.83 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=55.5
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
....+.+||=.|+| .|..+..+++.. +.+++.++.+++..+.+++ .|...-+.....+..+.+.. ..
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~------~~ 227 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQE------LG 227 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHh------cC
Confidence 45567788888854 344455566665 4689999998877666643 34321111111122221221 13
Q ss_pred ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
.+|+++..... ...+....+. |+++|.++.
T Consensus 228 ~~d~vi~~~g~---~~~~~~~~~~---l~~~G~~v~ 257 (333)
T cd08296 228 GAKLILATAPN---AKAISALVGG---LAPRGKLLI 257 (333)
T ss_pred CCCEEEECCCc---hHHHHHHHHH---cccCCEEEE
Confidence 58988843221 2345666777 999998875
No 449
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=79.07 E-value=14 Score=31.51 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=46.9
Q ss_pred EEEEEcccccHHHHHHHHHCCCC-CEEEEEecCccHHHHHHH-HHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 122 RCIEVGVYTGYSSLAIALVLPES-GCLVACERDARSLEVAKK-YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~~-~~v~~iD~s~~~~~~a~~-~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
+++=+||| .++..+|+.+... ..|+.||.+++..+.... .. -+..+++|+.+. ..+.+-| -..+|.+
T Consensus 2 ~iiIiG~G--~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~-------~~~~v~gd~t~~-~~L~~ag-i~~aD~v 70 (225)
T COG0569 2 KIIIIGAG--RVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL-------DTHVVIGDATDE-DVLEEAG-IDDADAV 70 (225)
T ss_pred EEEEECCc--HHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc-------ceEEEEecCCCH-HHHHhcC-CCcCCEE
Confidence 56667774 5666666666433 589999999987655222 12 278888888653 1222222 5789998
Q ss_pred EEcCCccc
Q 023411 200 FVDAEKRM 207 (282)
Q Consensus 200 ~id~~~~~ 207 (282)
+..-....
T Consensus 71 va~t~~d~ 78 (225)
T COG0569 71 VAATGNDE 78 (225)
T ss_pred EEeeCCCH
Confidence 87655433
No 450
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=78.99 E-value=23 Score=31.14 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=62.4
Q ss_pred hhcCCCEEEEE--cccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411 116 QILGAQRCIEV--GVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 116 ~~~~~~~VLEI--G~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
...++..||-- .-|-|.....+++.. +.++++.--+.+-.+.|++ +|..+-+.....|..+...++ ...
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~--~a~tI~~asTaeK~~~ake----nG~~h~I~y~~eD~v~~V~ki---Tng 213 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAV--GAHTIATASTAEKHEIAKE----NGAEHPIDYSTEDYVDEVKKI---TNG 213 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhc--CcEEEEEeccHHHHHHHHh----cCCcceeeccchhHHHHHHhc---cCC
Confidence 45677788754 334556666677765 4788888777666655554 566655666666655544333 224
Q ss_pred CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
...|.++-.-.... ++.-... ||++|.+|--
T Consensus 214 KGVd~vyDsvG~dt----~~~sl~~---Lk~~G~mVSf 244 (336)
T KOG1197|consen 214 KGVDAVYDSVGKDT----FAKSLAA---LKPMGKMVSF 244 (336)
T ss_pred CCceeeeccccchh----hHHHHHH---hccCceEEEe
Confidence 67888875444443 4445566 8999998864
No 451
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=78.99 E-value=53 Score=30.19 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=56.3
Q ss_pred EEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE----cchhhHHHHHHhCCCCCcee
Q 023411 123 CIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKH----GLAADSLKALILNGEASSYD 197 (282)
Q Consensus 123 VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~----gd~~~~l~~l~~~~~~~~fD 197 (282)
-+-+|+|+-..-..+.+.+.+ +..+...+++=.+.+..-+ ..|.. -+.+-. -|....+..+ .+..|
T Consensus 77 ~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~---~~g~~-~~~v~~~~~~~d~~~~~~~~-----~~~~~ 147 (356)
T COG0079 77 NVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQ---LAGAE-VVKVPLKEFRLDLDAILAAI-----RDKTK 147 (356)
T ss_pred eEEEcCChHHHHHHHHHHhhcCCCEEEEcCCChHHHHHHHH---hcCCe-EEEecccccccCHHHHHHhh-----hcCCC
Confidence 444788877666666666543 3478877776655544333 23322 122222 1222222222 34789
Q ss_pred EEEEcCC--c---cccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411 198 FAFVDAE--K---RMYQEYFELLLQLLLQIRVGGIIVIDNVLWH 236 (282)
Q Consensus 198 lV~id~~--~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~ 236 (282)
+||+..+ + --..+.+..+... +..++++|+|..+.+
T Consensus 148 lv~i~nPNNPTG~~~~~~~l~~l~~~---~~~~~~vVvDEAY~e 188 (356)
T COG0079 148 LVFLCNPNNPTGTLLPREELRALLEA---LPEGGLVVIDEAYIE 188 (356)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHh---CCCCcEEEEeCchhh
Confidence 9998754 1 1233445555555 677899999998743
No 452
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=78.87 E-value=1.8 Score=38.25 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=30.0
Q ss_pred cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHH
Q 023411 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSL 157 (282)
Q Consensus 118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~ 157 (282)
..+++|||+|||.|.-.+.+.... ...+...|.+.+.+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence 467899999999999888777643 25788888887765
No 453
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=78.74 E-value=25 Score=33.25 Aligned_cols=124 Identities=12% Similarity=0.141 Sum_probs=66.0
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCc-cHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAA 181 (282)
Q Consensus 103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~-~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (282)
.+|....+-..++........+=.++|++.....+...+.++.+|+..+..- .........++..|. ++.++..+-.
T Consensus 62 ~~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv--~v~~vd~~d~ 139 (431)
T PRK08248 62 MNPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGI--TVKFVDPSDP 139 (431)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCE--EEEEECCCCH
Confidence 3555666666677666666777788888777666655555566776665321 222333444454554 2444433222
Q ss_pred hHHHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCC-CcEEEEeCCCC
Q 023411 182 DSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRV-GGIIVIDNVLW 235 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~ 235 (282)
+.+.... .....+|++... +......++.+.++ .+. |..+|+|+..-
T Consensus 140 e~l~~ai----~~~tklV~l~sp~NPtG~v~di~~I~~l---a~~~gi~vIvD~t~a 189 (431)
T PRK08248 140 ENFEAAI----TDKTKALFAETIGNPKGDVLDIEAVAAI---AHEHGIPLIVDNTFA 189 (431)
T ss_pred HHHHHhc----CCCCeEEEEECCCCCCCcccCHHHHHHH---HHHcCCEEEEeCCCC
Confidence 3333322 245678887533 11122224555555 444 45667777753
No 454
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=78.69 E-value=31 Score=30.83 Aligned_cols=100 Identities=19% Similarity=0.185 Sum_probs=56.4
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE-cchhhHHHHHHhCCC
Q 023411 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGE 192 (282)
Q Consensus 115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~l~~~~~ 192 (282)
....++.+|+=.|+| .|..+..+++.. +.++++++.+++..+.++ ..|...-+.... .+..+.+..+ .
T Consensus 161 ~~~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~---~- 230 (345)
T cd08260 161 ARVKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELAR----ELGAVATVNASEVEDVAAAVRDL---T- 230 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHH----HhCCCEEEccccchhHHHHHHHH---h-
Confidence 344566788888853 344555666655 478999988887766653 335432122211 1222222222 1
Q ss_pred CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
.+.+|++|..... ........+. |+++|.++.
T Consensus 231 ~~~~d~vi~~~g~---~~~~~~~~~~---l~~~g~~i~ 262 (345)
T cd08260 231 GGGAHVSVDALGI---PETCRNSVAS---LRKRGRHVQ 262 (345)
T ss_pred CCCCCEEEEcCCC---HHHHHHHHHH---hhcCCEEEE
Confidence 2379988853321 2345566777 899998775
No 455
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.68 E-value=36 Score=29.24 Aligned_cols=81 Identities=15% Similarity=0.059 Sum_probs=46.7
Q ss_pred CCCEEEEEccc-ccHHHHHHHHHCC-CCCEEEEEecCc--cHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC-
Q 023411 119 GAQRCIEVGVY-TGYSSLAIALVLP-ESGCLVACERDA--RSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG- 191 (282)
Q Consensus 119 ~~~~VLEIG~G-~G~~t~~la~~~~-~~~~v~~iD~s~--~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~- 191 (282)
.++++|-.|+| ++.++..+++.+. .+.+|+.++.+. +..+...+.+ + .++.++..|..+. ...+...-
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---P--EPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---C--CCCcEEeCCCCCHHHHHHHHHHHH
Confidence 45688988985 5677777777653 357888888654 3233222221 2 2466777787543 12221110
Q ss_pred -CCCceeEEEEcCC
Q 023411 192 -EASSYDFAFVDAE 204 (282)
Q Consensus 192 -~~~~fDlV~id~~ 204 (282)
..+.+|+++..+.
T Consensus 81 ~~~g~iD~li~nAG 94 (256)
T PRK07889 81 EHVDGLDGVVHSIG 94 (256)
T ss_pred HHcCCCcEEEEccc
Confidence 1367999887653
No 456
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=78.65 E-value=27 Score=31.71 Aligned_cols=97 Identities=19% Similarity=0.214 Sum_probs=54.7
Q ss_pred cCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 118 ~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
.++.+|+-+|+| .|..+..+++.. +.++++++.+++....+. +..|... .+...+. +.+... ...+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~---~~~Ga~~--~i~~~~~-~~~~~~-----~~~~ 245 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEAL---EHLGADD--YLVSSDA-AEMQEA-----ADSL 245 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHH---HhcCCcE--EecCCCh-HHHHHh-----cCCC
Confidence 466788877764 455566677765 467888887776543332 2345431 1111111 112222 2358
Q ss_pred eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411 197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV 233 (282)
Q Consensus 197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~ 233 (282)
|++|-.... ...++.+.++ ++++|.++.=..
T Consensus 246 D~vid~~g~---~~~~~~~~~~---l~~~G~iv~~G~ 276 (357)
T PLN02514 246 DYIIDTVPV---FHPLEPYLSL---LKLDGKLILMGV 276 (357)
T ss_pred cEEEECCCc---hHHHHHHHHH---hccCCEEEEECC
Confidence 988854332 1345667777 999998876443
No 457
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=78.63 E-value=34 Score=31.32 Aligned_cols=123 Identities=16% Similarity=0.252 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
+|....+-..++.......++=+++|+......+...+.++.+|+..+..-. .....+......|. ++.++..+-.+
T Consensus 39 ~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~--~~~~v~~~d~~ 116 (369)
T cd00614 39 NPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGI--EVTFVDPDDPE 116 (369)
T ss_pred ChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCe--EEEEeCCCCHH
Confidence 3444445555555544455666677766555555444554556655543222 22223333333443 24444433223
Q ss_pred HHHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCC-CcEEEEeCCCC
Q 023411 183 SLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRV-GGIIVIDNVLW 235 (282)
Q Consensus 183 ~l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~ 235 (282)
.+.... ..+..+|++.... ......++.+.++ .+. |..+++|+..-
T Consensus 117 ~l~~~i----~~~~~~v~~e~~~np~g~~~dl~~i~~l---a~~~g~~livD~t~~ 165 (369)
T cd00614 117 ALEAAI----KPETKLVYVESPTNPTLKVVDIEAIAEL---AHEHGALLVVDNTFA 165 (369)
T ss_pred HHHHhc----CCCCeEEEEECCCCCCCeecCHHHHHHH---HHHcCCEEEEECCCc
Confidence 333322 2355678876441 1122235566665 444 55677788753
No 458
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=78.39 E-value=30 Score=28.83 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=45.3
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCC--CCEEEEEecCcc-------------------HHHHHHHHHHHhCCCCcEEEEE
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPE--SGCLVACERDAR-------------------SLEVAKKYYERAGVSHKVKIKH 177 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~--~~~v~~iD~s~~-------------------~~~~a~~~~~~~g~~~~v~~~~ 177 (282)
...+|+=+|||. .+..+++.+-. -++++.+|.+.- -.+.+++.++..+..-+++.+.
T Consensus 20 ~~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 20 RSARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred HhCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 345899999864 44444443311 268999986531 2345566666655444455555
Q ss_pred cchhhHHHHHHhCCCCCceeEEEEcCCc
Q 023411 178 GLAADSLKALILNGEASSYDFAFVDAEK 205 (282)
Q Consensus 178 gd~~~~l~~l~~~~~~~~fDlV~id~~~ 205 (282)
....+..+.. -..||+|++....
T Consensus 98 ~~~~~~~~~~-----~~~~dvVi~~~~~ 120 (197)
T cd01492 98 DDISEKPEEF-----FSQFDVVVATELS 120 (197)
T ss_pred cCccccHHHH-----HhCCCEEEECCCC
Confidence 5443333333 3689999976543
No 459
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=78.39 E-value=3 Score=37.11 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=46.1
Q ss_pred cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHH
Q 023411 172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTIS 251 (282)
Q Consensus 172 ~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~ 251 (282)
+|.|+..+..+.++. .++. .+.||+||+.+..-+.... .+.++ ++|+|+||++...+=- +-+...
T Consensus 201 kVhFLPld~~~~L~~-K~ky-~~~Fd~ifvs~s~vh~L~p--~l~~~---~a~~A~LvvEtaKfmv--------dLrKEq 265 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPH-KSKY-QNFFDLIFVSCSMVHFLKP--ELFQA---LAPDAVLVVETAKFMV--------DLRKEQ 265 (289)
T ss_pred EEEEeCchHHHHHhh-HHhh-cCCCCEEEEhhhhHhhcch--HHHHH---hCCCCEEEEEcchhhe--------eCCHHH
Confidence 477776666665554 2222 5899999998874443322 36677 9999999999863211 122344
Q ss_pred HHHHHHHh
Q 023411 252 IRNFNKNL 259 (282)
Q Consensus 252 ~~~~~~~~ 259 (282)
+..|.+++
T Consensus 266 ~~~F~~kv 273 (289)
T PF14740_consen 266 LQEFVKKV 273 (289)
T ss_pred HHHHHHHH
Confidence 66676554
No 460
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=78.34 E-value=1.6 Score=35.43 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=30.5
Q ss_pred cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHH
Q 023411 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAK 161 (282)
Q Consensus 118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~ 161 (282)
.++.+|+=+|.|. |..+..++..++ .+++.+|..++..+..+
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~~~~~~~~ 60 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERPERLRQLE 60 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCHHHHHhhh
Confidence 4677999999984 666788888885 89999999887665443
No 461
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=78.32 E-value=14 Score=30.24 Aligned_cols=84 Identities=10% Similarity=0.129 Sum_probs=46.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC--CcEEEEEcchhh--HHHHHHhCC-CC
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAAD--SLKALILNG-EA 193 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~--~~v~~~~gd~~~--~l~~l~~~~-~~ 193 (282)
+...|+.+|||.=.-...+....+ +.+++-+|. |+.++.-++.++..+.. .+.+++.+|..+ +...+.+.+ +.
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~-~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~ 155 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAG-GVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDP 155 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTT-TEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred CCcEEEEcCCCCCchHHHhhcccc-ceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCC
Confidence 345899999976655555555332 567777776 56666666666655321 235678888764 344554333 23
Q ss_pred CceeEEEEcCC
Q 023411 194 SSYDFAFVDAE 204 (282)
Q Consensus 194 ~~fDlV~id~~ 204 (282)
+..-++++.+.
T Consensus 156 ~~ptl~i~Egv 166 (183)
T PF04072_consen 156 DRPTLFIAEGV 166 (183)
T ss_dssp TSEEEEEEESS
T ss_pred CCCeEEEEcch
Confidence 44456666665
No 462
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=78.30 E-value=10 Score=33.62 Aligned_cols=87 Identities=24% Similarity=0.289 Sum_probs=46.4
Q ss_pred CEEEEEcccccHHHHHHHHHCCC---CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 121 QRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.+|+=+|. |..+-++++.+.. ...+++.|.+....+.+.+ .|+.+. ..+. ..... ....|
T Consensus 4 ~~v~IvG~--GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d~----~~~~--~~~~~-----~~~aD 66 (279)
T COG0287 4 MKVGIVGL--GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVIDE----LTVA--GLAEA-----AAEAD 66 (279)
T ss_pred cEEEEECC--chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCcccc----cccc--hhhhh-----cccCC
Confidence 36676775 4455555544422 2456777777655443331 222211 1000 00111 35678
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCCCcE
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGI 227 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~ 227 (282)
+||+..+......+++.+.+. |++|.+
T Consensus 67 ~VivavPi~~~~~~l~~l~~~---l~~g~i 93 (279)
T COG0287 67 LVIVAVPIEATEEVLKELAPH---LKKGAI 93 (279)
T ss_pred EEEEeccHHHHHHHHHHhccc---CCCCCE
Confidence 888888877777777777765 666643
No 463
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.25 E-value=35 Score=29.73 Aligned_cols=97 Identities=22% Similarity=0.315 Sum_probs=58.3
Q ss_pred hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411 116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
...++.+||-.|+ +.|..+..+++.. +.+++++..+++..+.++ ..|... +-....+..+.+..+ .
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~-~~~~~~~~~~~i~~~-----~ 206 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLK----ELGADE-VVIDDGAIAEQLRAA-----P 206 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCcE-EEecCccHHHHHHHh-----C
Confidence 3456778888885 4677777788876 478999988887655543 345421 211112222222222 2
Q ss_pred CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
..+|+++-... . ..+....+. |+++|.++.-
T Consensus 207 ~~~d~vl~~~~-~---~~~~~~~~~---l~~~g~~v~~ 237 (320)
T cd08243 207 GGFDKVLELVG-T---ATLKDSLRH---LRPGGIVCMT 237 (320)
T ss_pred CCceEEEECCC-h---HHHHHHHHH---hccCCEEEEE
Confidence 56999984333 2 235666777 9999988753
No 464
>PRK08655 prephenate dehydrogenase; Provisional
Probab=78.25 E-value=11 Score=35.61 Aligned_cols=84 Identities=17% Similarity=0.155 Sum_probs=44.5
Q ss_pred EEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411 122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~ 200 (282)
+|.=|| |.|..+..++..+.. +.+|+++|.+++.... .....|. .+ ..+..+ . -...|+||
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~---~a~~~gv----~~-~~~~~e----~-----~~~aDvVI 63 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE---VAKELGV----EY-ANDNID----A-----AKDADIVI 63 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHH---HHHHcCC----ee-ccCHHH----H-----hccCCEEE
Confidence 466676 345566655555432 3589999988765322 1222232 11 111111 1 14568887
Q ss_pred EcCCccccHHHHHHHHHhhcCCCCCc
Q 023411 201 VDAEKRMYQEYFELLLQLLLQIRVGG 226 (282)
Q Consensus 201 id~~~~~~~~~l~~~~~~~~~LkpgG 226 (282)
+..+.......++.+.+. +++|.
T Consensus 64 lavp~~~~~~vl~~l~~~---l~~~~ 86 (437)
T PRK08655 64 ISVPINVTEDVIKEVAPH---VKEGS 86 (437)
T ss_pred EecCHHHHHHHHHHHHhh---CCCCC
Confidence 766655555566666665 66655
No 465
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=78.23 E-value=25 Score=32.64 Aligned_cols=122 Identities=17% Similarity=0.201 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchh--
Q 023411 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAA-- 181 (282)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~-- 181 (282)
+....+-..++........+-+++|+..+...+...+.++.+|+..+..-. ........+...| +++...|..
T Consensus 61 p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~g----i~~~~~d~~d~ 136 (388)
T PRK07811 61 PTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWG----VEYTPVDLSDL 136 (388)
T ss_pred ccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCC----eEEEEeCCCCH
Confidence 334444444554444445566677665555544444555667776654322 1222222222222 344443332
Q ss_pred hHHHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCC-CcEEEEeCCCCCC
Q 023411 182 DSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRV-GGIIVIDNVLWHG 237 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~~g 237 (282)
+.+.... .....+|++..+. ......++.+.++ .+. |..+++|+..-.+
T Consensus 137 e~l~~~i----~~~tklV~ie~p~NPtg~~~dl~~I~~l---a~~~gi~lIvD~a~a~~ 188 (388)
T PRK07811 137 DAVRAAI----TPRTKLIWVETPTNPLLSITDIAALAEL---AHDAGAKVVVDNTFASP 188 (388)
T ss_pred HHHHHhc----CcCCeEEEEECCCCCcceecCHHHHHHH---HHHcCCEEEEECCCCcc
Confidence 2222221 2356788876442 1223345556555 443 5677888875433
No 466
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=78.23 E-value=22 Score=30.29 Aligned_cols=81 Identities=9% Similarity=-0.082 Sum_probs=49.2
Q ss_pred CEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH------HHHHhCCCC
Q 023411 121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL------KALILNGEA 193 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l------~~l~~~~~~ 193 (282)
++||-.|+ +|.++..+++.+. .+.+|+.++.++...+...+.+....-..++.++.+|..+.. ..+... .
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~--~ 79 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEI--F 79 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHH--c
Confidence 46887774 6777777776663 357999999887765554444433211135788888876421 111111 2
Q ss_pred CceeEEEEcCC
Q 023411 194 SSYDFAFVDAE 204 (282)
Q Consensus 194 ~~fDlV~id~~ 204 (282)
+..|.|+..+.
T Consensus 80 ~~id~vv~~ag 90 (259)
T PRK12384 80 GRVDLLVYNAG 90 (259)
T ss_pred CCCCEEEECCC
Confidence 57899887653
No 467
>PRK07050 cystathionine beta-lyase; Provisional
Probab=78.12 E-value=59 Score=30.23 Aligned_cols=127 Identities=16% Similarity=0.157 Sum_probs=69.3
Q ss_pred cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccH-HHHHHHHHHHhCCCCcEEEEEcchh
Q 023411 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS-LEVAKKYYERAGVSHKVKIKHGLAA 181 (282)
Q Consensus 103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~-~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (282)
-+|....+-..++.......++=..+|+..+...+...+.++.+|+..+..-.. ...........|.. +.++..+..
T Consensus 63 ~~pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~--v~~vd~~~~ 140 (394)
T PRK07050 63 ATPTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGIT--VRFYDPLIG 140 (394)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeE--EEEECCCCH
Confidence 355556666666666666778877777777766665456656777777644332 22233344444542 444432211
Q ss_pred hHHHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCC-CcEEEEeCCCCCCc
Q 023411 182 DSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRV-GGIIVIDNVLWHGK 238 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~~g~ 238 (282)
+.+.... ...-.+|++..+ +......++.+.++ .+. |-.+++|+....+.
T Consensus 141 ~~l~~~i----~~~tklV~le~p~Np~~~~~di~~I~~i---a~~~gi~livD~a~a~~~ 193 (394)
T PRK07050 141 AGIADLI----QPNTRLIWLEAPGSVTMEVPDVPAITAA---ARARGVVTAIDNTYSAGL 193 (394)
T ss_pred HHHHHhc----CCCCeEEEEECCCCCCccHhhHHHHHHH---HHHcCCEEEEECCccccc
Confidence 2223222 234578887644 22244456666666 554 45677788764443
No 468
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=78.06 E-value=27 Score=30.70 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=51.3
Q ss_pred EEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCC---CcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVS---HKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~---~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
+|.=||+|. .+..++..+.. +.+|+.++.+++.++..++ .|+. ..... .....+.... ...+|
T Consensus 2 ~I~IiG~G~--~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~-~~~~~~~~~~------~~~~d 68 (304)
T PRK06522 2 KIAILGAGA--IGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLEDGEITV-PVLAADDPAE------LGPQD 68 (304)
T ss_pred EEEEECCCH--HHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCcccCCceee-cccCCCChhH------cCCCC
Confidence 577788854 44444443321 3589999987766544432 2331 11110 0001111111 26789
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCCCcEEE
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIV 229 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv 229 (282)
+||+-.........++.+.+. +.++..++
T Consensus 69 ~vila~k~~~~~~~~~~l~~~---l~~~~~iv 97 (304)
T PRK06522 69 LVILAVKAYQLPAALPSLAPL---LGPDTPVL 97 (304)
T ss_pred EEEEecccccHHHHHHHHhhh---cCCCCEEE
Confidence 999887766677778888877 88776554
No 469
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=78.04 E-value=41 Score=31.15 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADS 183 (282)
Q Consensus 105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~~ 183 (282)
|....+-..++....+..++=...|++.+...+...+.++.+|+..+..-. ............+. .+.+...+-.+.
T Consensus 51 p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~--~v~~~d~~d~~~ 128 (382)
T TIGR02080 51 PTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCF--RVLFVDQGDEQA 128 (382)
T ss_pred chHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCe--EEEEECCCCHHH
Confidence 334444444555444556765555555555545444554566666554433 23333332222222 244432221222
Q ss_pred HHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCC-CCcEEEEeCCCCCC
Q 023411 184 LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIR-VGGIIVIDNVLWHG 237 (282)
Q Consensus 184 l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~Lk-pgG~lv~dd~~~~g 237 (282)
+.... ..+.++|++..+ +......++.+.++ .+ .|.++++|+..-.+
T Consensus 129 l~~ai----~~~tklV~l~~p~NPtG~~~dl~~I~~l---a~~~g~~vvvD~a~~~~ 178 (382)
T TIGR02080 129 LRAAL----AQKPKLVLIETPSNPLLRVVDIAKICHL---AKAVGAVVVVDNTFLSP 178 (382)
T ss_pred HHHhc----CcCceEEEEECCCCCCCEecCHHHHHHH---HHHcCCEEEEECCCccc
Confidence 22221 234678887543 11111224555555 43 35678888886544
No 470
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=77.91 E-value=20 Score=26.64 Aligned_cols=93 Identities=15% Similarity=0.121 Sum_probs=53.1
Q ss_pred EEEEEcccccHHHHH-HHHHCCCCCEEE-EEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 122 RCIEVGVYTGYSSLA-IALVLPESGCLV-ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~-la~~~~~~~~v~-~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
+|.=||+|....... -.....++.+++ .+|.+++..+.+ .+..+. . ...|..+.+. ...+|+|
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~---~~~~~~----~-~~~~~~~ll~-------~~~~D~V 66 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAF---AEKYGI----P-VYTDLEELLA-------DEDVDAV 66 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH---HHHTTS----E-EESSHHHHHH-------HTTESEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHH---HHHhcc----c-chhHHHHHHH-------hhcCCEE
Confidence 567789865533222 222233355665 567877665544 333333 3 4455555444 2579999
Q ss_pred EEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411 200 FVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLW 235 (282)
Q Consensus 200 ~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~ 235 (282)
++..+.....+ .+... ++-|--++++-.+-
T Consensus 67 ~I~tp~~~h~~---~~~~~---l~~g~~v~~EKP~~ 96 (120)
T PF01408_consen 67 IIATPPSSHAE---IAKKA---LEAGKHVLVEKPLA 96 (120)
T ss_dssp EEESSGGGHHH---HHHHH---HHTTSEEEEESSSS
T ss_pred EEecCCcchHH---HHHHH---HHcCCEEEEEcCCc
Confidence 99887655444 44444 55666788876653
No 471
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=77.85 E-value=25 Score=32.51 Aligned_cols=122 Identities=10% Similarity=0.151 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecC-ccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERD-ARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (282)
Q Consensus 104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s-~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (282)
+|....+-..++...+....+=+++|++.....++ .+.++.+|+..+.. ..........+...|.. +.++..+-.+
T Consensus 49 ~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~--v~~vd~~d~e 125 (380)
T PRK06176 49 NPTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-LFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLS--CTIIDTSDLS 125 (380)
T ss_pred ChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-HcCCCCEEEEcCCChhHHHHHHHHHHHhcCeE--EEEcCCCCHH
Confidence 34444455555555555556667777776654443 45556777776542 22233334444444432 3333322222
Q ss_pred HHHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCC-CcEEEEeCCCC
Q 023411 183 SLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRV-GGIIVIDNVLW 235 (282)
Q Consensus 183 ~l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~ 235 (282)
.+.... .....+|++..+. ......++.+.++ .+. |-.+++|+..-
T Consensus 126 ~l~~ai----~~~t~lV~lesP~Nptg~~~di~~I~~l---a~~~gi~vivD~t~a 174 (380)
T PRK06176 126 QIKKAI----KPNTKALYLETPSNPLLKITDLAQCASV---AKDHGLLTIVDNTFA 174 (380)
T ss_pred HHHHhc----CcCceEEEEECCCCCCceecCHHHHHHH---HHHcCCEEEEECCcc
Confidence 233222 2456788875431 1122235556665 444 45667777753
No 472
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.79 E-value=19 Score=33.84 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=43.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCc-cHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~-~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
..++|+=+|.|. .+..++..+ ..+.+|+++|.++ +.+....+.+...+ ++++.++..+. . .+.+
T Consensus 4 ~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~---~-----~~~~ 69 (450)
T PRK14106 4 KGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG----IELVLGEYPEE---F-----LEGV 69 (450)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC----CEEEeCCcchh---H-----hhcC
Confidence 456888888765 455555554 2367999999975 22222222233323 56777776542 1 3678
Q ss_pred eEEEEcCCc
Q 023411 197 DFAFVDAEK 205 (282)
Q Consensus 197 DlV~id~~~ 205 (282)
|+|+.....
T Consensus 70 d~vv~~~g~ 78 (450)
T PRK14106 70 DLVVVSPGV 78 (450)
T ss_pred CEEEECCCC
Confidence 999986653
No 473
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=77.78 E-value=16 Score=31.13 Aligned_cols=83 Identities=19% Similarity=0.162 Sum_probs=53.2
Q ss_pred CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhC--CCC
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA 193 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~--~~~ 193 (282)
.+++||=.|+ +|..+..+++.+- .+.+|+.++.+++.++...+.++..+ .++.++.+|..+. +..+... ...
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4568888884 6778888877663 35799999998877666555565433 2477888887642 1221110 012
Q ss_pred CceeEEEEcCC
Q 023411 194 SSYDFAFVDAE 204 (282)
Q Consensus 194 ~~fDlV~id~~ 204 (282)
+.+|.+|..+.
T Consensus 86 ~~~d~li~~ag 96 (255)
T PRK07523 86 GPIDILVNNAG 96 (255)
T ss_pred CCCCEEEECCC
Confidence 57899887654
No 474
>PRK07063 short chain dehydrogenase; Provisional
Probab=77.74 E-value=23 Score=30.26 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=53.2
Q ss_pred CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CC
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA 193 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~ 193 (282)
.++++|-.|+. |.++..+++.+- .+.+|+.++.+++..+...+.+...+...++.++.+|..+. ...+...- ..
T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45688888864 566777666653 35789999998887776666665422334578888887542 12211100 12
Q ss_pred CceeEEEEcCC
Q 023411 194 SSYDFAFVDAE 204 (282)
Q Consensus 194 ~~fDlV~id~~ 204 (282)
+.+|.++..+.
T Consensus 85 g~id~li~~ag 95 (260)
T PRK07063 85 GPLDVLVNNAG 95 (260)
T ss_pred CCCcEEEECCC
Confidence 57899887654
No 475
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=77.73 E-value=30 Score=30.40 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=55.4
Q ss_pred hhcCCCEEEEEccc--ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411 116 QILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (282)
Q Consensus 116 ~~~~~~~VLEIG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~ 193 (282)
...++.+|+-.|.+ .|..+..++... +.+++.++.+++..+.++. .+....+.. .+ .+....+......
T Consensus 163 ~~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~--~~-~~~~~~~~~~~~~ 233 (342)
T cd08266 163 RLRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDY--RK-EDFVREVRELTGK 233 (342)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEec--CC-hHHHHHHHHHhCC
Confidence 34567788888875 455566666654 4789999888776555432 233211111 11 1121222111113
Q ss_pred CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
..+|+++..... ..+..+.+. ++++|.++.-
T Consensus 234 ~~~d~~i~~~g~----~~~~~~~~~---l~~~G~~v~~ 264 (342)
T cd08266 234 RGVDVVVEHVGA----ATWEKSLKS---LARGGRLVTC 264 (342)
T ss_pred CCCcEEEECCcH----HHHHHHHHH---hhcCCEEEEE
Confidence 468998865442 234556666 8999887753
No 476
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=77.56 E-value=13 Score=30.32 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=46.3
Q ss_pred cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (282)
Q Consensus 118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f 196 (282)
..+++|.=||+|. |.-...+++.+ +.+|+++|.+..... .....+ ++ ..+..+.+ ...
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~----~~~~~~----~~--~~~l~ell---------~~a 92 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEE----GADEFG----VE--YVSLDELL---------AQA 92 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHH----HHHHTT----EE--ESSHHHHH---------HH-
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhh----hccccc----ce--eeehhhhc---------chh
Confidence 4677999998853 33344444555 489999999887543 122111 32 22343333 356
Q ss_pred eEEEEcCCccc-cHH-HHHHHHHhhcCCCCCcEEE
Q 023411 197 DFAFVDAEKRM-YQE-YFELLLQLLLQIRVGGIIV 229 (282)
Q Consensus 197 DlV~id~~~~~-~~~-~l~~~~~~~~~LkpgG~lv 229 (282)
|+|++..+... ... +-+..... +|+|.++|
T Consensus 93 Div~~~~plt~~T~~li~~~~l~~---mk~ga~lv 124 (178)
T PF02826_consen 93 DIVSLHLPLTPETRGLINAEFLAK---MKPGAVLV 124 (178)
T ss_dssp SEEEE-SSSSTTTTTSBSHHHHHT---STTTEEEE
T ss_pred hhhhhhhccccccceeeeeeeeec---cccceEEE
Confidence 99988766221 111 12233444 78776555
No 477
>PRK07326 short chain dehydrogenase; Provisional
Probab=77.51 E-value=18 Score=30.36 Aligned_cols=81 Identities=19% Similarity=0.076 Sum_probs=49.7
Q ss_pred CCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHHhCC--CCC
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNG--EAS 194 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~l~~~~--~~~ 194 (282)
.++||-+|. +|..+..+++.+- .+.+|++++.+++......+.+... .++.++.+|..+.. ....... ..+
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467888884 6777777776653 3568999998887665554444322 45888888865421 1111100 024
Q ss_pred ceeEEEEcCC
Q 023411 195 SYDFAFVDAE 204 (282)
Q Consensus 195 ~fDlV~id~~ 204 (282)
.+|.||....
T Consensus 82 ~~d~vi~~ag 91 (237)
T PRK07326 82 GLDVLIANAG 91 (237)
T ss_pred CCCEEEECCC
Confidence 7899887543
No 478
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.38 E-value=49 Score=29.64 Aligned_cols=73 Identities=16% Similarity=0.095 Sum_probs=36.8
Q ss_pred EEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHH-HHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411 122 RCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLE-VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (282)
Q Consensus 122 ~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~-~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV 199 (282)
+|.-||+|. |....+.+...+...+++.+|++++..+ .+..............+..+|. ..+ ...|+|
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~----~~l------~~aDiV 71 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY----ADC------KGADVV 71 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH----HHh------CCCCEE
Confidence 577789865 3332222222111247999999987654 3332222211212234443433 222 566999
Q ss_pred EEcCC
Q 023411 200 FVDAE 204 (282)
Q Consensus 200 ~id~~ 204 (282)
++...
T Consensus 72 iita~ 76 (308)
T cd05292 72 VITAG 76 (308)
T ss_pred EEccC
Confidence 98654
No 479
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=77.36 E-value=2.8 Score=32.92 Aligned_cols=92 Identities=17% Similarity=0.230 Sum_probs=51.0
Q ss_pred EEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCC----C-cEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 124 IEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS----H-KVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 124 LEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~----~-~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
+=+|+ |..+..++..+. .+.+|+.+...+ .++. ++..|+. . ...+............ .+.||
T Consensus 2 ~I~G~--GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~D 69 (151)
T PF02558_consen 2 LIIGA--GAIGSLYAARLAQAGHDVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSAD-----AGPYD 69 (151)
T ss_dssp EEEST--SHHHHHHHHHHHHTTCEEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHH-----HSTES
T ss_pred EEECc--CHHHHHHHHHHHHCCCceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhc-----cCCCc
Confidence 33555 556666555552 257899998876 4433 3333321 0 0111111111111011 48999
Q ss_pred EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
+||+........+.++.+.+. +.+++.+++
T Consensus 70 ~viv~vKa~~~~~~l~~l~~~---~~~~t~iv~ 99 (151)
T PF02558_consen 70 LVIVAVKAYQLEQALQSLKPY---LDPNTTIVS 99 (151)
T ss_dssp EEEE-SSGGGHHHHHHHHCTG---EETTEEEEE
T ss_pred EEEEEecccchHHHHHHHhhc---cCCCcEEEE
Confidence 999987766677778888887 999965554
No 480
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=77.31 E-value=36 Score=29.52 Aligned_cols=100 Identities=18% Similarity=0.333 Sum_probs=56.4
Q ss_pred HhhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411 115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (282)
Q Consensus 115 ~~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~ 192 (282)
....++..|+-.|| +.|..+..+++.. +.+++.++.+++..+.+++ .|...-+.....+..+.+... ..
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~---~~ 205 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKAL---TG 205 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHH---cC
Confidence 34456789998897 3555666666654 4789999988876655533 343221121111222222222 11
Q ss_pred CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
...+|+++..... .....+.+. ++++|.++.
T Consensus 206 ~~~~d~v~~~~g~----~~~~~~~~~---~~~~g~~v~ 236 (323)
T cd08241 206 GRGVDVVYDPVGG----DVFEASLRS---LAWGGRLLV 236 (323)
T ss_pred CCCcEEEEECccH----HHHHHHHHh---hccCCEEEE
Confidence 3468988854332 234556666 889988765
No 481
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=77.07 E-value=25 Score=31.45 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=44.0
Q ss_pred EEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCc-------------------cHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411 122 RCIEVGVY-TGYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHGLAA 181 (282)
Q Consensus 122 ~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (282)
+||-+||| .|...+..+...+ -++++-+|.+. .-.+.|.+.+++....-+++.+.++..
T Consensus 1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 47778886 3333333222222 36888888533 124555666666554445777766665
Q ss_pred hHHHHHHhCCCCCceeEEEEcCC
Q 023411 182 DSLKALILNGEASSYDFAFVDAE 204 (282)
Q Consensus 182 ~~l~~l~~~~~~~~fDlV~id~~ 204 (282)
+....+ -.+||+|+...+
T Consensus 80 ~~~~~f-----~~~fdvVi~alD 97 (291)
T cd01488 80 DKDEEF-----YRQFNIIICGLD 97 (291)
T ss_pred chhHHH-----hcCCCEEEECCC
Confidence 543333 368999987544
No 482
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=77.06 E-value=32 Score=30.62 Aligned_cols=102 Identities=22% Similarity=0.237 Sum_probs=52.6
Q ss_pred hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc---chhhHHHHHHhC
Q 023411 116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG---LAADSLKALILN 190 (282)
Q Consensus 116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g---d~~~~l~~l~~~ 190 (282)
...++.+||=.|+ +.|..+..+++... .+++++.-+++..+..++.+...|...-+..... +..+.+...
T Consensus 143 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~--- 217 (341)
T cd08290 143 KLQPGDWVIQNGANSAVGQAVIQLAKLLG--IKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSA--- 217 (341)
T ss_pred ccCCCCEEEEccchhHHHHHHHHHHHHcC--CeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHH---
Confidence 4457788888775 46667777887763 6666655444222222333333444321111111 222222222
Q ss_pred CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
. .+.+|+|+-..... .+....+. |+++|.++.
T Consensus 218 ~-~~~~d~vld~~g~~----~~~~~~~~---l~~~G~~v~ 249 (341)
T cd08290 218 P-GGRPKLALNCVGGK----SATELARL---LSPGGTMVT 249 (341)
T ss_pred c-CCCceEEEECcCcH----hHHHHHHH---hCCCCEEEE
Confidence 1 22689988433322 23345677 899998774
No 483
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=77.02 E-value=22 Score=33.58 Aligned_cols=136 Identities=19% Similarity=0.259 Sum_probs=71.6
Q ss_pred CCCEEEEEcc-cccHH--HHHHHHHCC---CCCEEEEEecC-ccHHHHHHHHHHHhCCCCcEEEEEc----chhhHHHHH
Q 023411 119 GAQRCIEVGV-YTGYS--SLAIALVLP---ESGCLVACERD-ARSLEVAKKYYERAGVSHKVKIKHG----LAADSLKAL 187 (282)
Q Consensus 119 ~~~~VLEIG~-G~G~~--t~~la~~~~---~~~~v~~iD~s-~~~~~~a~~~~~~~g~~~~v~~~~g----d~~~~l~~l 187 (282)
+|..|+=+|- |+|-. +.-+|.++. ...-++++|.. |.++++.+...+..++ .|+.. |..++...-
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v----~~f~~~~~~~Pv~Iak~a 174 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV----PFFGSGTEKDPVEIAKAA 174 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCC----ceecCCCCCCHHHHHHHH
Confidence 3556777764 34433 233444442 23457888864 4556777777666553 44432 222221111
Q ss_pred HhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCe
Q 023411 188 ILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERV 265 (282)
Q Consensus 188 ~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (282)
........||+|++|-.- +.-...++++..++..++|.=+|++=|... | .....-.+.|++.+ ++
T Consensus 175 l~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~-G--------QdA~~~A~aF~e~l----~i 241 (451)
T COG0541 175 LEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMI-G--------QDAVNTAKAFNEAL----GI 241 (451)
T ss_pred HHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEeccc-c--------hHHHHHHHHHhhhc----CC
Confidence 111114679999999662 223445666666666699997665544421 1 11222346677655 55
Q ss_pred EEEEee
Q 023411 266 SISMVP 271 (282)
Q Consensus 266 ~~~~lp 271 (282)
..+++.
T Consensus 242 tGvIlT 247 (451)
T COG0541 242 TGVILT 247 (451)
T ss_pred ceEEEE
Confidence 555554
No 484
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=77.02 E-value=26 Score=26.94 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=47.8
Q ss_pred CEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCc-------------------cHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411 121 QRCIEVGVY-TGYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHGLA 180 (282)
Q Consensus 121 ~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (282)
.+|+=+||| .|......+...+ -++++-+|.+. .-.+.+++.+......-+++.+..+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 81 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI 81 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred CEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence 488999996 4444333322222 36899998533 23566777777766555677777766
Q ss_pred -hhHHHHHHhCCCCCceeEEEEcCCc
Q 023411 181 -ADSLKALILNGEASSYDFAFVDAEK 205 (282)
Q Consensus 181 -~~~l~~l~~~~~~~~fDlV~id~~~ 205 (282)
.+....+ -..+|+||.....
T Consensus 82 ~~~~~~~~-----~~~~d~vi~~~d~ 102 (135)
T PF00899_consen 82 DEENIEEL-----LKDYDIVIDCVDS 102 (135)
T ss_dssp SHHHHHHH-----HHTSSEEEEESSS
T ss_pred cccccccc-----ccCCCEEEEecCC
Confidence 2334444 2578999876553
No 485
>PRK06460 hypothetical protein; Provisional
Probab=76.98 E-value=53 Score=30.27 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=46.2
Q ss_pred EEEEcccccHHHHHHHHHCCCCCEEEEEecC-ccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411 123 CIEVGVYTGYSSLAIALVLPESGCLVACERD-ARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (282)
Q Consensus 123 VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s-~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i 201 (282)
.+-+++|...+...+...+.++.+|+..+.. ..........++..|.. +.++..+..+.+..+. ..+..+|++
T Consensus 63 ~v~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~--v~~~~~~~~~~l~~~~----~~~tklV~l 136 (376)
T PRK06460 63 GVAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVN--VDASNPGSDNIIEKAK----SKRYDVVFV 136 (376)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcE--EEEECCCCHHHHHHhc----CCCceEEEE
Confidence 3445555544433333334445566554321 11222233344444542 4444322222333221 234578887
Q ss_pred cCCc--cccHHHHHHHHHhhcCCCC-CcEEEEeCCCC
Q 023411 202 DAEK--RMYQEYFELLLQLLLQIRV-GGIIVIDNVLW 235 (282)
Q Consensus 202 d~~~--~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~ 235 (282)
..+. ......++.+.++ .+. |.++++|++..
T Consensus 137 ~sp~NPtG~v~d~~~I~~l---a~~~g~~vivDea~~ 170 (376)
T PRK06460 137 ENITNPLLRVVDITELSKV---CKENGSILIVDATFS 170 (376)
T ss_pred ECCCCCCCcccCHHHHHHH---HHHcCCEEEEECCcC
Confidence 6542 1112223455555 444 56777888754
No 486
>PRK05599 hypothetical protein; Provisional
Probab=76.92 E-value=23 Score=30.16 Aligned_cols=81 Identities=17% Similarity=0.088 Sum_probs=51.3
Q ss_pred EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CCCcee
Q 023411 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EASSYD 197 (282)
Q Consensus 122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~~~fD 197 (282)
++|-.|++ +.++..+++.+..+.+|+.++.+++.++.+.+.++..+- +++.++.+|..+. ...+..+- ..+..|
T Consensus 2 ~vlItGas-~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 79 (246)
T PRK05599 2 SILILGGT-SDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAGEIS 79 (246)
T ss_pred eEEEEeCc-cHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence 56767775 456777777665578899999888877776666665442 2477788886552 11111110 136789
Q ss_pred EEEEcCC
Q 023411 198 FAFVDAE 204 (282)
Q Consensus 198 lV~id~~ 204 (282)
+++..+.
T Consensus 80 ~lv~nag 86 (246)
T PRK05599 80 LAVVAFG 86 (246)
T ss_pred EEEEecC
Confidence 9887544
No 487
>PRK07814 short chain dehydrogenase; Provisional
Probab=76.71 E-value=21 Score=30.69 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=51.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHHhCC--CC
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNG--EA 193 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~l~~~~--~~ 193 (282)
+.+++|=.|+ +|..+..+++.+ ..+.+|+.++.+++..+...+.+...+ .++.++.+|..+.. ......- .-
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4568888885 677777777665 235799999998876665555554333 35788888875431 1111100 02
Q ss_pred CceeEEEEcCC
Q 023411 194 SSYDFAFVDAE 204 (282)
Q Consensus 194 ~~fDlV~id~~ 204 (282)
+++|.||..+.
T Consensus 86 ~~id~vi~~Ag 96 (263)
T PRK07814 86 GRLDIVVNNVG 96 (263)
T ss_pred CCCCEEEECCC
Confidence 57899987654
No 488
>PLN02256 arogenate dehydrogenase
Probab=76.71 E-value=33 Score=30.75 Aligned_cols=85 Identities=14% Similarity=0.067 Sum_probs=45.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
...+|.=||+| ..+..++..+.. +.+|+++|.++. .+. ....|. .. ..+..+.. ....|
T Consensus 35 ~~~kI~IIG~G--~mG~slA~~L~~~G~~V~~~d~~~~-~~~----a~~~gv----~~-~~~~~e~~--------~~~aD 94 (304)
T PLN02256 35 RKLKIGIVGFG--NFGQFLAKTFVKQGHTVLATSRSDY-SDI----AAELGV----SF-FRDPDDFC--------EEHPD 94 (304)
T ss_pred CCCEEEEEeeC--HHHHHHHHHHHhCCCEEEEEECccH-HHH----HHHcCC----ee-eCCHHHHh--------hCCCC
Confidence 34578888875 444455554422 358999998863 222 222232 21 12222111 13468
Q ss_pred EEEEcCCccccHHHHHHH-HHhhcCCCCCc
Q 023411 198 FAFVDAEKRMYQEYFELL-LQLLLQIRVGG 226 (282)
Q Consensus 198 lV~id~~~~~~~~~l~~~-~~~~~~LkpgG 226 (282)
+||+..........++.+ ... +++|.
T Consensus 95 vVilavp~~~~~~vl~~l~~~~---l~~~~ 121 (304)
T PLN02256 95 VVLLCTSILSTEAVLRSLPLQR---LKRST 121 (304)
T ss_pred EEEEecCHHHHHHHHHhhhhhc---cCCCC
Confidence 888876665556666655 344 66654
No 489
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=76.68 E-value=25 Score=29.99 Aligned_cols=81 Identities=21% Similarity=0.154 Sum_probs=53.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HH----HHHhCC
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LK----ALILNG 191 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~----~l~~~~ 191 (282)
..+++|=.| |+|..+..+++.+- .+.+|+.++.+++.++...+.+...+ .++.++.+|..+. +. .+...
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~- 86 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER- 86 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH-
Confidence 456888888 56777888777663 35689999998877666665555432 3578888888652 21 11111
Q ss_pred CCCceeEEEEcCC
Q 023411 192 EASSYDFAFVDAE 204 (282)
Q Consensus 192 ~~~~fDlV~id~~ 204 (282)
.+++|.|+..+.
T Consensus 87 -~~~id~vi~~ag 98 (259)
T PRK08213 87 -FGHVDILVNNAG 98 (259)
T ss_pred -hCCCCEEEECCC
Confidence 257899987654
No 490
>PRK06914 short chain dehydrogenase; Provisional
Probab=76.65 E-value=49 Score=28.55 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=51.9
Q ss_pred CCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--H---HHhCCCC
Q 023411 120 AQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK--A---LILNGEA 193 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~--~---l~~~~~~ 193 (282)
.+++|-.|+ +|..+..+++.+ ..+.+|++++.+++..+...+.....+...++.++.+|..+... . .... -
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~--~ 79 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKE--I 79 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHh--c
Confidence 346787775 556677766654 33578999998887666655555544544568999998865321 1 1111 2
Q ss_pred CceeEEEEcCC
Q 023411 194 SSYDFAFVDAE 204 (282)
Q Consensus 194 ~~fDlV~id~~ 204 (282)
+++|.|+..+.
T Consensus 80 ~~id~vv~~ag 90 (280)
T PRK06914 80 GRIDLLVNNAG 90 (280)
T ss_pred CCeeEEEECCc
Confidence 57899887653
No 491
>PRK05854 short chain dehydrogenase; Provisional
Probab=76.59 E-value=29 Score=30.90 Aligned_cols=85 Identities=16% Similarity=0.080 Sum_probs=52.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHHhC--CCC
Q 023411 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILN--GEA 193 (282)
Q Consensus 119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~l~~~--~~~ 193 (282)
.++++|-.|+. |.++..+++.+. .+.+|+.+..+++..+.+.+.+....-..++.++.+|..+.. ..+... ...
T Consensus 13 ~gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 45678877764 556777776653 357999999888776666555544322235888888875531 111111 013
Q ss_pred CceeEEEEcCC
Q 023411 194 SSYDFAFVDAE 204 (282)
Q Consensus 194 ~~fDlV~id~~ 204 (282)
+.+|+++..+.
T Consensus 92 ~~iD~li~nAG 102 (313)
T PRK05854 92 RPIHLLINNAG 102 (313)
T ss_pred CCccEEEECCc
Confidence 67899987654
No 492
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=76.46 E-value=56 Score=29.17 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=53.0
Q ss_pred cCCCEEEEEcccc-cHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411 118 LGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (282)
Q Consensus 118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~ 195 (282)
.++.+||-.|+|. |..+..+++..+ . ++++++-+++....+++ .|...-+.....+.. .+..+. ..+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~---~~~~ 231 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAG--ASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT---DGTG 231 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc---CCCC
Confidence 4566777666643 556666777653 5 68888766655544433 343211111111222 122221 1357
Q ss_pred eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
+|+||-.... ......+.+. |+++|.++.
T Consensus 232 vd~vld~~g~---~~~~~~~~~~---l~~~G~~v~ 260 (341)
T cd05281 232 VDVVLEMSGN---PKAIEQGLKA---LTPGGRVSI 260 (341)
T ss_pred CCEEEECCCC---HHHHHHHHHH---hccCCEEEE
Confidence 8999864432 2235566777 999998875
No 493
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=76.35 E-value=7.6 Score=36.08 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=45.4
Q ss_pred CCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE-EcCC----ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411 168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAF-VDAE----KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238 (282)
Q Consensus 168 g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~-id~~----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~ 238 (282)
++ +++++++++..+.+.... ++++|.++ +|+. .....+.++.+.+. ++|||.++.-+...+..
T Consensus 273 ~~-drv~i~t~si~~~L~~~~----~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~---~~pgaRV~~Rsa~~~~~ 340 (380)
T PF11899_consen 273 RL-DRVRIHTDSIEEVLRRLP----PGSFDRFVLSDHMDWMDPEQLNEEWQELART---ARPGARVLWRSAAVPPW 340 (380)
T ss_pred CC-CeEEEEeccHHHHHHhCC----CCCeeEEEecchhhhCCHHHHHHHHHHHHHH---hCCCCEEEEeeCCCCCC
Confidence 44 689999999998887653 58999865 4543 33345556666666 99999999987765443
No 494
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=76.19 E-value=19 Score=32.06 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=48.1
Q ss_pred CCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCce
Q 023411 120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY 196 (282)
Q Consensus 120 ~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~f 196 (282)
+++||-.| |+|..+..+++.+- .+.+|+++..+....+...+.....+...+++++.+|..+. +... ...+
T Consensus 5 ~~~vlVTG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-----~~~~ 78 (322)
T PLN02986 5 GKLVCVTG-ASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQA-----IEGC 78 (322)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHH-----HhCC
Confidence 45788666 47888888887653 34678877655543333333332223334689999998653 2333 2357
Q ss_pred eEEEEcCC
Q 023411 197 DFAFVDAE 204 (282)
Q Consensus 197 DlV~id~~ 204 (282)
|.||..+.
T Consensus 79 d~vih~A~ 86 (322)
T PLN02986 79 DAVFHTAS 86 (322)
T ss_pred CEEEEeCC
Confidence 98887654
No 495
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=76.02 E-value=23 Score=29.92 Aligned_cols=79 Identities=22% Similarity=0.143 Sum_probs=50.1
Q ss_pred CEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--H----HHHhCCCC
Q 023411 121 QRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--K----ALILNGEA 193 (282)
Q Consensus 121 ~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~----~l~~~~~~ 193 (282)
++||=.| |+|..+..+++.+ ..+.+|++++.+++..+...+.+...+ .++.++.+|..+.. . .+... .
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~--~ 76 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAE--F 76 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHh--c
Confidence 3577666 5677788877765 335689999998876665555554333 35888888876532 1 11111 2
Q ss_pred CceeEEEEcCC
Q 023411 194 SSYDFAFVDAE 204 (282)
Q Consensus 194 ~~fDlV~id~~ 204 (282)
+..|.||..+.
T Consensus 77 ~~~d~vi~~a~ 87 (255)
T TIGR01963 77 GGLDILVNNAG 87 (255)
T ss_pred CCCCEEEECCC
Confidence 56899887653
No 496
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=75.99 E-value=10 Score=33.22 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=50.3
Q ss_pred CCCEEEEEcccccH----HHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411 119 GAQRCIEVGVYTGY----SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (282)
Q Consensus 119 ~~~~VLEIG~G~G~----~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~ 194 (282)
...+|+-+|+|+-- -+.-+-+.+|+++.++-.|+.+- +++--..+.+|.....+ +.
T Consensus 61 ~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~-------------vSDa~~~~~~Dc~t~~~-------~~ 120 (299)
T PF06460_consen 61 HNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY-------------VSDADQSIVGDCRTYMP-------PD 120 (299)
T ss_dssp TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS---------------B-SSSEEEES-GGGEEE-------SS
T ss_pred cCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh-------------ccccCCceeccccccCC-------CC
Confidence 45699999998522 35567788898889999998753 22233556677654433 58
Q ss_pred ceeEEEEcCC-------------ccc-cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411 195 SYDFAFVDAE-------------KRM-YQEYFELLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 195 ~fDlV~id~~-------------~~~-~~~~l~~~~~~~~~LkpgG~lv~d 231 (282)
++|+||.|-- ++. +......+.+. |+-||-+.+.
T Consensus 121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~k---LaLGGSvaiK 168 (299)
T PF06460_consen 121 KFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEK---LALGGSVAIK 168 (299)
T ss_dssp -EEEEEE----TTS-SS-S------THHHHHHHHHHHH---EEEEEEEEEE
T ss_pred cccEEEEecccccccccccccCCccccHHHHHHHHHhh---hhcCceEEEE
Confidence 9999998743 122 22234445566 8999998885
No 497
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=75.96 E-value=23 Score=34.55 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=57.9
Q ss_pred hcCCCEEEEEcccccHHHHHHHHHCC--CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCC
Q 023411 117 ILGAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGE 192 (282)
Q Consensus 117 ~~~~~~VLEIG~G~G~~t~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~ 192 (282)
...+++||--| |+|+++..+.+.+- .-.+++-+|.++..+......+...-...++.++.||..|. +.....
T Consensus 247 ~~~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~--- 322 (588)
T COG1086 247 MLTGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAME--- 322 (588)
T ss_pred HcCCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHh---
Confidence 34567888766 45777776665541 12689999999988888777777642245689999999874 233321
Q ss_pred CCceeEEEEcCC
Q 023411 193 ASSYDFAFVDAE 204 (282)
Q Consensus 193 ~~~fDlV~id~~ 204 (282)
.-+.|.||.-+.
T Consensus 323 ~~kvd~VfHAAA 334 (588)
T COG1086 323 GHKVDIVFHAAA 334 (588)
T ss_pred cCCCceEEEhhh
Confidence 356999998765
No 498
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=75.85 E-value=23 Score=33.49 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=50.2
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (282)
Q Consensus 119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD 197 (282)
.+++|+-+|+|. |......++.+ +.+|+.+|+++.....+.. .|. ++. +.. .. ....|
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~----~G~----~v~--~l~----ea-----l~~aD 269 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAM----DGF----RVM--TME----EA-----AELGD 269 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHh----cCC----Eec--CHH----HH-----HhCCC
Confidence 688999999874 33333444444 4799999999875433221 132 221 222 22 14679
Q ss_pred EEEEcCCccccHHHHH-HHHHhhcCCCCCcEEEEe
Q 023411 198 FAFVDAEKRMYQEYFE-LLLQLLLQIRVGGIIVID 231 (282)
Q Consensus 198 lV~id~~~~~~~~~l~-~~~~~~~~LkpgG~lv~d 231 (282)
+||...... ..+. ..... +|+|++++.-
T Consensus 270 VVI~aTG~~---~vI~~~~~~~---mK~GailiNv 298 (425)
T PRK05476 270 IFVTATGNK---DVITAEHMEA---MKDGAILANI 298 (425)
T ss_pred EEEECCCCH---HHHHHHHHhc---CCCCCEEEEc
Confidence 988754322 2333 45555 8999887764
No 499
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=75.84 E-value=40 Score=30.76 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=44.2
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCc---------------------cHHHHHHHHHHHhCCCCcEEEE
Q 023411 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA---------------------RSLEVAKKYYERAGVSHKVKIK 176 (282)
Q Consensus 119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~---------------------~~~~~a~~~~~~~g~~~~v~~~ 176 (282)
...+|+=+|||. |......+...+ -++++.+|.+. .-.+.+++.++..+..-+++.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 445899999973 433333222222 36899999863 1234445566654433345566
Q ss_pred Ecchhh-HHHHHHhCCCCCceeEEEEcCC
Q 023411 177 HGLAAD-SLKALILNGEASSYDFAFVDAE 204 (282)
Q Consensus 177 ~gd~~~-~l~~l~~~~~~~~fDlV~id~~ 204 (282)
..+..+ ....+ -..||+|+...+
T Consensus 102 ~~~~~~~~~~~~-----~~~~DlVid~~D 125 (339)
T PRK07688 102 VQDVTAEELEEL-----VTGVDLIIDATD 125 (339)
T ss_pred eccCCHHHHHHH-----HcCCCEEEEcCC
Confidence 555432 22233 267899886544
No 500
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=75.83 E-value=52 Score=28.41 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=58.0
Q ss_pred HhhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411 115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (282)
Q Consensus 115 ~~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~ 192 (282)
....++.+||=.|+ +.|..+..+++.. +.++++++.+++..+.+++ .|.. .++..+..+....+.....
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~ 202 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREITG 202 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHcC
Confidence 44556788988884 4666777777776 4789999888776655432 3442 2222221122222221111
Q ss_pred CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411 193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230 (282)
Q Consensus 193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~ 230 (282)
...+|+++-.... .......+. ++++|.++.
T Consensus 203 ~~~~d~vl~~~~~----~~~~~~~~~---l~~~g~~v~ 233 (320)
T cd05286 203 GRGVDVVYDGVGK----DTFEGSLDS---LRPRGTLVS 233 (320)
T ss_pred CCCeeEEEECCCc----HhHHHHHHh---hccCcEEEE
Confidence 3569999853332 234556666 899998774
Done!