Query 023412
Match_columns 282
No_of_seqs 135 out of 1454
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 8.5E-46 1.8E-50 328.3 29.1 246 31-282 64-331 (365)
2 PTZ00224 protein phosphatase 2 100.0 5.7E-43 1.2E-47 311.2 30.3 249 16-281 6-271 (381)
3 COG0631 PTC1 Serine/threonine 100.0 2.1E-43 4.5E-48 302.0 26.1 241 29-282 5-253 (262)
4 KOG0697 Protein phosphatase 1B 100.0 6.2E-43 1.3E-47 286.3 21.9 262 15-282 5-292 (379)
5 KOG0698 Serine/threonine prote 100.0 5E-41 1.1E-45 296.4 28.8 252 29-282 36-305 (330)
6 PF00481 PP2C: Protein phospha 100.0 1.4E-41 3.1E-46 291.0 16.1 236 33-273 1-254 (254)
7 cd00143 PP2Cc Serine/threonine 100.0 2.2E-38 4.7E-43 270.7 27.0 241 33-280 2-254 (254)
8 PRK14559 putative protein seri 100.0 2.2E-38 4.8E-43 296.5 27.1 240 31-281 374-635 (645)
9 smart00332 PP2Cc Serine/threon 100.0 7.7E-38 1.7E-42 267.8 27.6 241 30-278 4-255 (255)
10 KOG0699 Serine/threonine prote 100.0 2.8E-32 6E-37 231.3 20.5 156 122-281 327-503 (542)
11 KOG0700 Protein phosphatase 2C 100.0 6.5E-30 1.4E-34 221.5 17.7 221 46-268 84-378 (390)
12 KOG1379 Serine/threonine prote 99.9 2E-23 4.3E-28 175.6 21.6 202 46-279 90-329 (330)
13 KOG1323 Serine/threonine phosp 99.9 8.9E-24 1.9E-28 178.0 17.9 222 61-282 142-488 (493)
14 KOG0618 Serine/threonine phosp 99.9 1.8E-21 3.8E-26 183.4 15.6 245 29-282 519-773 (1081)
15 PF13672 PP2C_2: Protein phosp 99.9 6.3E-21 1.4E-25 158.9 14.0 178 37-249 3-193 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 1.5E-17 3.2E-22 136.6 22.9 184 32-265 4-192 (193)
17 TIGR02865 spore_II_E stage II 99.8 5.2E-17 1.1E-21 157.5 21.1 211 21-280 541-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.6 1.8E-13 3.8E-18 112.2 21.1 175 62-281 3-193 (193)
19 COG2208 RsbU Serine phosphatas 98.9 6.2E-07 1.3E-11 80.9 21.7 187 46-282 161-367 (367)
20 PRK10693 response regulator of 86.2 13 0.00028 32.5 11.2 104 47-157 150-259 (303)
21 PF09436 DUF2016: Domain of un 59.9 5.7 0.00012 26.7 1.4 16 223-238 26-41 (72)
22 COG2168 DsrH Uncharacterized c 56.1 8.6 0.00019 27.4 1.8 48 223-273 24-71 (96)
23 COG3700 AphA Acid phosphatase 47.4 39 0.00084 27.3 4.4 45 224-268 71-130 (237)
24 PF04077 DsrH: DsrH like prote 22.0 18 0.00038 25.4 -1.2 26 223-248 18-43 (88)
25 PF06972 DUF1296: Protein of u 21.4 1.5E+02 0.0033 19.1 3.1 25 238-262 19-44 (60)
26 COG0796 MurI Glutamate racemas 20.8 1.4E+02 0.0029 25.9 3.7 54 65-118 7-67 (269)
27 PF01436 NHL: NHL repeat; Int 20.8 1.5E+02 0.0032 15.5 3.8 19 134-152 10-28 (28)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=8.5e-46 Score=328.33 Aligned_cols=246 Identities=35% Similarity=0.567 Sum_probs=205.7
Q ss_pred ceeEEEEeecCCCCCCCCceeeeeeeec--------CCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhcccCCcchHHH
Q 023412 31 LVKFGFSLVKGKANHPMEDYHVAKFVQL--------QGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRS 102 (282)
Q Consensus 31 ~~~~~~~s~~G~~~~~neD~~~~~~~~~--------~~~~~~~~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (282)
.+.++.+|++|.|. .|||++++..... ......+|+|||||||+.++.++++.+.+.+.+.......+.+.
T Consensus 64 ~~~~~~~s~~G~R~-~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~a 142 (365)
T PLN03145 64 VVRSGAWADIGSRS-SMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEKV 142 (365)
T ss_pred ceEEEEEccccCCC-CCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHHH
Confidence 35789999999866 8999987542210 12235799999999999999999999999888765555566788
Q ss_pred HHHHHHHHHHHHHhccC-CCCCCCcceEEEEEEeCCEEEEEEcCCccEEEEeCCeeEeCCCCCCCC--chHHHHHhCCCe
Q 023412 103 ISKAYEKTDQAILSHSS-DLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPN--TERGSIEDKGGF 179 (282)
Q Consensus 103 l~~~~~~~~~~l~~~~~-~~~~~~~tt~~~~~i~~~~~~~~~vGDsr~~l~r~~~~~~lt~dh~~~--~e~~ri~~~gg~ 179 (282)
|.++|..++.++..... .....+|||++++++.++.++++|+||||+|+++++++++||+||++. .|++||.+.||.
T Consensus 143 l~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~ 222 (365)
T PLN03145 143 VSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGY 222 (365)
T ss_pred HHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCc
Confidence 99999999999876432 223358999999999999999999999999999999999999999998 788899999998
Q ss_pred eecCCCCCCcccCcccccccccCCCCCC-------CCCCCceEEEEEecCCCeEEEEEcCCCCCCCCHHHHHHHH----H
Q 023412 180 VSNMPGDVPRVNGQLAVSRAFGDKSLKS-------HLRSDPDIQNTILDGRSDVLVLASDGLWKVMSNQEAVDIA----R 248 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~~ltralG~~~~~~-------~v~~~p~~~~~~l~~~~d~lll~SDGv~~~l~~~ei~~~~----~ 248 (282)
+.. .+.++.+.+||+||+..+|. .+.++|++..+.+.+.+.+||||||||||.++++++.+++ .
T Consensus 223 v~~-----g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~ 297 (365)
T PLN03145 223 VYD-----GYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQ 297 (365)
T ss_pred eec-----ceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHh
Confidence 753 35677788999999976653 3678999999999975668889999999999999976554 4
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEeCC
Q 023412 249 KFKDPQKAAKQLTAEALKRDSKDDISCVVVRFRG 282 (282)
Q Consensus 249 ~~~~~~~~a~~l~~~a~~~~~~DN~T~ivi~~~g 282 (282)
...+|+++|+.|++.|+++++.||+|+|||+|+.
T Consensus 298 ~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~ 331 (365)
T PLN03145 298 EHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQS 331 (365)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 4568999999999999999999999999999863
No 2
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=5.7e-43 Score=311.23 Aligned_cols=249 Identities=33% Similarity=0.515 Sum_probs=203.1
Q ss_pred cCCCCCCCCCCCCCCceeEEEEeecCCCCCCCCceeeeeeeecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhcccC
Q 023412 16 GGRSSSTGKGRSNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEF 95 (282)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~~~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~ 95 (282)
+.|..++-..+..+..+.++..+.+|.|+ .|||++++.. +....+|+|||||||..+|.++++.+.+.+.+....
T Consensus 6 ~~p~~~~~~~~~~~~~~~~g~~s~~G~R~-~nED~~~v~~----~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~ 80 (381)
T PTZ00224 6 PKPVLSKLVDRAGNSIFRCASACVNGYRE-SMEDAHLLYL----TDDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEP 80 (381)
T ss_pred CCCccccccccCCCccEEEEEEeCCCCCC-CCCCeeEecc----CCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcccc
Confidence 34555566666788899999999999977 8999987532 233469999999999999999999888766543221
Q ss_pred CcchHHHHHHHHHHHHHHHHhccCCCCCCCcceEEEEEE-eCCEEEEEEcCCccEEEEeCCeeEeCCCCCCCC--chHHH
Q 023412 96 WVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILI-NGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPN--TERGS 172 (282)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~i-~~~~~~~~~vGDsr~~l~r~~~~~~lt~dh~~~--~e~~r 172 (282)
.....|++++..+++++..... .+|||++++++ .+.+++++|+||||+|++|++++.+||+||++. .|++|
T Consensus 81 --~~~~~l~~a~~~~d~~i~~~~~----~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~R 154 (381)
T PTZ00224 81 --MTDERMEELCLEIDEEWMDSGR----EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQR 154 (381)
T ss_pred --ccHHHHHHHHHHHHHHHHhccc----CCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhH
Confidence 1245688999999999876433 23455554444 468999999999999999999999999999998 67889
Q ss_pred HHhCCCeeecCCCCCCcccCcccccccccCCCCCC---------CCCCCceEEEEEecCCCeEEEEEcCCCCC-CCCHHH
Q 023412 173 IEDKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKS---------HLRSDPDIQNTILDGRSDVLVLASDGLWK-VMSNQE 242 (282)
Q Consensus 173 i~~~gg~~~~~~~~~~~~~~~~~ltralG~~~~~~---------~v~~~p~~~~~~l~~~~d~lll~SDGv~~-~l~~~e 242 (282)
|.+.|+.+.. .|.++.+.+||+||+..+|. .|.++|++..+.+.+ +|+|||||||||| .+++++
T Consensus 155 I~~~gg~v~~-----~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~-~D~llLaSDGL~d~~ls~eE 228 (381)
T PTZ00224 155 IEACGGRVVS-----NRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQS-NDFIILACDGVFEGNFSNEE 228 (381)
T ss_pred HHHccCEecc-----ccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCC-CCEEEEECCCcCcCccCHHH
Confidence 9999987753 36677889999999976442 355789999999986 9999999999999 799999
Q ss_pred HHHHHHc----cCCHHHHHHHHHHHHHhcCCCCCcEEEEEEeC
Q 023412 243 AVDIARK----FKDPQKAAKQLTAEALKRDSKDDISCVVVRFR 281 (282)
Q Consensus 243 i~~~~~~----~~~~~~~a~~l~~~a~~~~~~DN~T~ivi~~~ 281 (282)
+.+++.. ..+++++|+.|++.|+.+++.||+|+|||++.
T Consensus 229 i~~iv~~~l~~~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~ 271 (381)
T PTZ00224 229 VVAFVKEQLETCDDLAVVAGRVCDEAIRRGSKDNISCLIVQLK 271 (381)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEee
Confidence 9998863 46899999999999999999999999999985
No 3
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-43 Score=302.01 Aligned_cols=241 Identities=33% Similarity=0.435 Sum_probs=201.2
Q ss_pred CCceeEEEEeecCCCCCCCCceeeeeeeecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhccc----CCcc--hHHH
Q 023412 29 VGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEE----FWVD--PQRS 102 (282)
Q Consensus 29 ~~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~~~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~----~~~~--~~~~ 102 (282)
...+.++..+..|..|..|||++++........ ..+|+|||||||+++++++++.+++.+.+... .... ..+.
T Consensus 5 ~~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~ 83 (262)
T COG0631 5 ILSLKVAGLSDVGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEEL 83 (262)
T ss_pred cceeeeeeeccCCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHH
Confidence 455788999999999988999998766443333 67999999999999998888887777764411 1111 5789
Q ss_pred HHHHHHHHHHHHHhccC--CCCCCCcceEEEEEEeCCEEEEEEcCCccEEEEeCCeeEeCCCCCCCCchHHHHHhCCCee
Q 023412 103 ISKAYEKTDQAILSHSS--DLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGGFV 180 (282)
Q Consensus 103 l~~~~~~~~~~l~~~~~--~~~~~~~tt~~~~~i~~~~~~~~~vGDsr~~l~r~~~~~~lt~dh~~~~e~~ri~~~gg~~ 180 (282)
|.+.+..++..+..... ....+++||++++++.+++++++||||||+|++|++++++||.||++. .++...+...
T Consensus 84 l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~---~~~~~~~~~~ 160 (262)
T COG0631 84 LKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLV---NRLEQRGIIT 160 (262)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHH---HHHHHhcCCC
Confidence 99999999999988753 345789999999999999999999999999999999999999999765 3333333333
Q ss_pred ecCCCCCCcccCcccccccccCCCCCCCCCCCceEEEEEecCCCeEEEEEcCCCCCCCCHHHHHHHHHccCCHHHHHHHH
Q 023412 181 SNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWKVMSNQEAVDIARKFKDPQKAAKQL 260 (282)
Q Consensus 181 ~~~~~~~~~~~~~~~ltralG~~~~~~~v~~~p~~~~~~l~~~~d~lll~SDGv~~~l~~~ei~~~~~~~~~~~~~a~~l 260 (282)
+.....+|+.+ .+||+||+.. ...|++....+.+ +++|||||||+||.++.+++.++++...+|+++++.|
T Consensus 161 ~~~~~~~~~~~---~ltralG~~~-----~~~p~~~~~~~~~-~d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~l 231 (262)
T COG0631 161 PEEARSHPRRN---ALTRALGDFD-----LLEPDITELELEP-GDFLLLCSDGLWDVVSDDEIVDILKNSETPQEAADKL 231 (262)
T ss_pred HHHHHhCccch---hhhhhcCCCc-----ccceeEEEEEcCC-CCEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHHH
Confidence 33334456666 9999999988 4899999999998 7999999999999999999999999888999999999
Q ss_pred HHHHHhcCCCCCcEEEEEEeCC
Q 023412 261 TAEALKRDSKDDISCVVVRFRG 282 (282)
Q Consensus 261 ~~~a~~~~~~DN~T~ivi~~~g 282 (282)
++.|+.+++.||+|+|+|++.+
T Consensus 232 i~~a~~~g~~DNiT~ilv~~~~ 253 (262)
T COG0631 232 IELALEGGGPDNITVVLVRLNG 253 (262)
T ss_pred HHHHHhcCCCCceEEEEEEeec
Confidence 9999999999999999999753
No 4
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-43 Score=286.34 Aligned_cols=262 Identities=29% Similarity=0.489 Sum_probs=228.4
Q ss_pred hcCCCCCCCCCCCCCCceeEEEEeecCCCCCCCCceeeeeee-ecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhcc
Q 023412 15 VGGRSSSTGKGRSNVGLVKFGFSLVKGKANHPMEDYHVAKFV-QLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEE 93 (282)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~s~~G~~~~~neD~~~~~~~-~~~~~~~~~~~V~DG~Gg~~~a~~~~~~~~~~~~~~~ 93 (282)
...|...+-+..+.-..+.|+..|++|||- .+||++.+... ...-++|.+|+|||||.|+++|.++++.+++.+....
T Consensus 5 LdKPkteKhn~~G~GNglryg~SSMQGWR~-eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse 83 (379)
T KOG0697|consen 5 LDKPKTEKHNAEGEGNGLRYGVSSMQGWRV-EMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSE 83 (379)
T ss_pred ccCcccccccccCcCCceeeeeccccchhh-hhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhH
Confidence 345566677777788889999999999999 89999865432 2333679999999999999999999999999998775
Q ss_pred cCCc--------chHHHHHHHHHHHHHHHHhccCC--CCCCCcceEEEEEEeCCEEEEEEcCCccEEEEeCCeeEeCCCC
Q 023412 94 EFWV--------DPQRSISKAYEKTDQAILSHSSD--LGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTD 163 (282)
Q Consensus 94 ~~~~--------~~~~~l~~~~~~~~~~l~~~~~~--~~~~~~tt~~~~~i~~~~~~~~~vGDsr~~l~r~~~~~~lt~d 163 (282)
.+.. ..+..|+..|...++-+...+.. ...++|+|++++++...++|++|+||||+.+.|++++..-|.|
T Consensus 84 ~F~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqD 163 (379)
T KOG0697|consen 84 EFRGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQD 163 (379)
T ss_pred HHhhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccC
Confidence 5543 45678888998888877654432 2245888889999999999999999999999999999999999
Q ss_pred CCCC--chHHHHHhCCCeeecCCCCCCcccCcccccccccCCCCCC---------CCCCCceEEEEEecCCCeEEEEEcC
Q 023412 164 HEPN--TERGSIEDKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKS---------HLRSDPDIQNTILDGRSDVLVLASD 232 (282)
Q Consensus 164 h~~~--~e~~ri~~~gg~~~~~~~~~~~~~~~~~ltralG~~~~~~---------~v~~~p~~~~~~l~~~~d~lll~SD 232 (282)
|.|. .|++||..+||.+-. .|.||.+.++|+||+..+|. .|+++|+++.+...++++||||++|
T Consensus 164 HKP~~p~EkeRIqnAGGSVMI-----qRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACD 238 (379)
T KOG0697|consen 164 HKPYLPKEKERIQNAGGSVMI-----QRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACD 238 (379)
T ss_pred CCCCChHHHHHHhcCCCeEEE-----EEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEcc
Confidence 9999 999999999999885 58999999999999999883 4999999999999988999999999
Q ss_pred CCCCCCCHHHHHHHHHc----cCCHHHHHHHHHHHHHhcCCCCCcEEEEEEeCC
Q 023412 233 GLWKVMSNQEAVDIARK----FKDPQKAAKQLTAEALKRDSKDDISCVVVRFRG 282 (282)
Q Consensus 233 Gv~~~l~~~ei~~~~~~----~~~~~~~a~~l~~~a~~~~~~DN~T~ivi~~~g 282 (282)
||||.++.+|+.++++. ..+..+++..+++.++-+|+.||+|+|+|-|.|
T Consensus 239 GIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~ 292 (379)
T KOG0697|consen 239 GIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPG 292 (379)
T ss_pred chhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHhccCccCceEEEEecCC
Confidence 99999999999999976 578999999999999999999999999998875
No 5
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5e-41 Score=296.42 Aligned_cols=252 Identities=46% Similarity=0.719 Sum_probs=215.0
Q ss_pred CCceeEEE-EeecCCCCCCCCceeeeeee----ecCCC-ceEEEEEEcCCCCChHHHHHHHHHHHHHHhcccCCcc---h
Q 023412 29 VGLVKFGF-SLVKGKANHPMEDYHVAKFV----QLQGH-ELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVD---P 99 (282)
Q Consensus 29 ~~~~~~~~-~s~~G~~~~~neD~~~~~~~----~~~~~-~~~~~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~~~---~ 99 (282)
+..+.++. .+.+|+++ .+||++..... ...+. ...+|||||||||+.+|.++.+.+...+.+....+.. .
T Consensus 36 ~~~~~~~~~~~~~~~r~-~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~ 114 (330)
T KOG0698|consen 36 NESYRLGSLLSIRGRRR-KMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDV 114 (330)
T ss_pred cccccceEEEecCCCCC-ccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHH
Confidence 33444444 47777777 89999976543 22333 4789999999999999999999999999988777664 6
Q ss_pred HHHHHHHHH-HHHHHHHhccCCCCCCCcceEEEEEEeCCEEEEEEcCCccEEEEeCC-eeEeCCCCCCCC--chHHHHHh
Q 023412 100 QRSISKAYE-KTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAG-VAVQMTTDHEPN--TERGSIED 175 (282)
Q Consensus 100 ~~~l~~~~~-~~~~~l~~~~~~~~~~~~tt~~~~~i~~~~~~~~~vGDsr~~l~r~~-~~~~lt~dh~~~--~e~~ri~~ 175 (282)
...++++|. ..+.++..+.......++|++++++.++.+++++|+||||+++.+.+ ...+||.||.+. .|+.||..
T Consensus 115 ~~a~~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~ 194 (330)
T KOG0698|consen 115 KDALRRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEA 194 (330)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHH
Confidence 899999999 69998886522234567777777766677999999999999999865 899999999997 99999999
Q ss_pred CCCeeecCCCCCCcccCcccccccccCCCCC-CCCCCCceEEEEEecCCCeEEEEEcCCCCCCCCHHHHHHHHHc----c
Q 023412 176 KGGFVSNMPGDVPRVNGQLAVSRAFGDKSLK-SHLRSDPDIQNTILDGRSDVLVLASDGLWKVMSNQEAVDIARK----F 250 (282)
Q Consensus 176 ~gg~~~~~~~~~~~~~~~~~ltralG~~~~~-~~v~~~p~~~~~~l~~~~d~lll~SDGv~~~l~~~ei~~~~~~----~ 250 (282)
.||++..... .+|.+|.++++|+||+..+| +.+.++|++....+..+++||||+||||||.++.+|..++++. .
T Consensus 195 ~GG~v~~~~~-~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~ 273 (330)
T KOG0698|consen 195 AGGRVSNWGG-VWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASI 273 (330)
T ss_pred cCCEEEEcCC-cceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhcc
Confidence 9999985443 57999999999999999999 7799999999999998789999999999999999999999988 6
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCcEEEEEEeCC
Q 023412 251 KDPQKAAKQLTAEALKRDSKDDISCVVVRFRG 282 (282)
Q Consensus 251 ~~~~~~a~~l~~~a~~~~~~DN~T~ivi~~~g 282 (282)
..+..++..|.+.+..+++.||+|||||.|..
T Consensus 274 ~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~ 305 (330)
T KOG0698|consen 274 SSPLAAAKLLATEALSRGSKDNITVVVVRLKS 305 (330)
T ss_pred ccHHHHHHHHHHHHhhcCCCCCeEEEEEEecC
Confidence 79999999999999999999999999999863
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=1.4e-41 Score=291.05 Aligned_cols=236 Identities=42% Similarity=0.626 Sum_probs=192.6
Q ss_pred eEEEEeecCCCCCCCCceeeeeeeec---CCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhcccCCc--chHHHHHHHH
Q 023412 33 KFGFSLVKGKANHPMEDYHVAKFVQL---QGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWV--DPQRSISKAY 107 (282)
Q Consensus 33 ~~~~~s~~G~~~~~neD~~~~~~~~~---~~~~~~~~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~ 107 (282)
.+++.+..|.|. .|||.+++..... ......+|+|||||||..++.+++..+...+.+...... .+.+.|..+|
T Consensus 1 ~~~~~~~~g~r~-~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~ 79 (254)
T PF00481_consen 1 DYGVSSMQGVRK-EMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAF 79 (254)
T ss_dssp EEEEEEEECTSS-SHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCeecCCCCCC-cccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhccccee
Confidence 378889999999 8999998766442 345688999999999999999999999877765543332 4778899999
Q ss_pred HH-HHHHHHhccCC-CCCCCcceEEEEEEeCCEEEEEEcCCccEEEEeCCeeE-eCCCCCCCC--chHHHHHhCCCeeec
Q 023412 108 EK-TDQAILSHSSD-LGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAV-QMTTDHEPN--TERGSIEDKGGFVSN 182 (282)
Q Consensus 108 ~~-~~~~l~~~~~~-~~~~~~tt~~~~~i~~~~~~~~~vGDsr~~l~r~~~~~-~lt~dh~~~--~e~~ri~~~gg~~~~ 182 (282)
.. .+..+...... ....+|||++++++.++++|++|+||||+|+++++... +||+||++. .|+.||.+.||.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~ 159 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSE 159 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEE
T ss_pred eecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeecccccccc
Confidence 99 77777662211 23568888999999999999999999999999999888 999999999 899999999999885
Q ss_pred CCCCCCcccCcccccccccCCCCCC----CCCCCceEEEEEecCCCeEEEEEcCCCCCCCCHHHHHHHHHccCC----HH
Q 023412 183 MPGDVPRVNGQLAVSRAFGDKSLKS----HLRSDPDIQNTILDGRSDVLVLASDGLWKVMSNQEAVDIARKFKD----PQ 254 (282)
Q Consensus 183 ~~~~~~~~~~~~~ltralG~~~~~~----~v~~~p~~~~~~l~~~~d~lll~SDGv~~~l~~~ei~~~~~~~~~----~~ 254 (282)
..|.++.+.+||+||+..+|+ .|.++|++..+.+.+.+.+||||||||||.++++++.++++...+ |+
T Consensus 160 ----~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~ 235 (254)
T PF00481_consen 160 ----NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQ 235 (254)
T ss_dssp ----TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHH
T ss_pred ----chhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHH
Confidence 468888899999999999998 799999999999998546999999999999999999999987544 99
Q ss_pred HHHHHHHHHHHhcCCCCCc
Q 023412 255 KAAKQLTAEALKRDSKDDI 273 (282)
Q Consensus 255 ~~a~~l~~~a~~~~~~DN~ 273 (282)
.+|+.|++.|+++++.||+
T Consensus 236 ~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 236 EAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp HHHHHHHHHHHHTTHHSHE
T ss_pred HHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999996
No 7
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=2.2e-38 Score=270.74 Aligned_cols=241 Identities=44% Similarity=0.610 Sum_probs=200.7
Q ss_pred eEEEEeecCCCCCCCCceeeeeeeecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhcccC-----CcchHHHHHHHH
Q 023412 33 KFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEF-----WVDPQRSISKAY 107 (282)
Q Consensus 33 ~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~~~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~ 107 (282)
+++..+..|.|. .|||++++.....+ .+..+|+|||||||+..++.+++.+.+.+.+.... ...+...|.+++
T Consensus 2 ~~~~~~~~g~r~-~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 79 (254)
T cd00143 2 SAGVSDKGGDRK-TNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAF 79 (254)
T ss_pred ceeeecCCCCCC-CCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 566777777777 89999986543211 24689999999999988888888888777654332 234567899999
Q ss_pred HHHHHHHHhccCC--CCCCCcceEEEEEEeCCEEEEEEcCCccEEEEeCCeeEeCCCCCCCC--chHHHHHhCCCeeecC
Q 023412 108 EKTDQAILSHSSD--LGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPN--TERGSIEDKGGFVSNM 183 (282)
Q Consensus 108 ~~~~~~l~~~~~~--~~~~~~tt~~~~~i~~~~~~~~~vGDsr~~l~r~~~~~~lt~dh~~~--~e~~ri~~~gg~~~~~ 183 (282)
..+++.+...... ....++||++++++..+.++++|+||||+|++++++++++|.||++. .+..|+...++...
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~-- 157 (254)
T cd00143 80 LRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVS-- 157 (254)
T ss_pred HHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEE--
Confidence 9999999876542 34568999999999999999999999999999999999999999988 67788888777643
Q ss_pred CCCCCcccCcccccccccCCCCCCCCCCCceEEEEEecCCCeEEEEEcCCCCCCCCHHHHHHHHHccC---CHHHHHHHH
Q 023412 184 PGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWKVMSNQEAVDIARKFK---DPQKAAKQL 260 (282)
Q Consensus 184 ~~~~~~~~~~~~ltralG~~~~~~~v~~~p~~~~~~l~~~~d~lll~SDGv~~~l~~~ei~~~~~~~~---~~~~~a~~l 260 (282)
..+.++...+||+||...+++.+..+|++....+.+++++|||||||||++++++++.+++.... +++++++.|
T Consensus 158 ---~~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~l 234 (254)
T cd00143 158 ---NGRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQEL 234 (254)
T ss_pred ---eCEEcCceeeccccCCccccCCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHHH
Confidence 12444566999999999877667889999999994459999999999999999999999998876 799999999
Q ss_pred HHHHHhcCCCCCcEEEEEEe
Q 023412 261 TAEALKRDSKDDISCVVVRF 280 (282)
Q Consensus 261 ~~~a~~~~~~DN~T~ivi~~ 280 (282)
++.+..++..||+|+|++++
T Consensus 235 ~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 235 VDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred HHHHHhCCCCCCEEEEEEeC
Confidence 99999999999999999975
No 8
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=2.2e-38 Score=296.54 Aligned_cols=240 Identities=20% Similarity=0.250 Sum_probs=178.6
Q ss_pred ceeEEEEeecCCCCCCCCceeeeeeee-----cCC---CceEEEEEEcCCCCChHHHHHHHHHHHH----HHhcccCCcc
Q 023412 31 LVKFGFSLVKGKANHPMEDYHVAKFVQ-----LQG---HELGLFAIYDGHLGETVPAYLQKHLFSN----ILKEEEFWVD 98 (282)
Q Consensus 31 ~~~~~~~s~~G~~~~~neD~~~~~~~~-----~~~---~~~~~~~V~DG~Gg~~~a~~~~~~~~~~----~~~~~~~~~~ 98 (282)
.++++..|++|.+|+.|||++.+.... ..+ ....+|+|||||||+.+++.+++.+++. +.+.......
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~ 453 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELP 453 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 478899999999777999998653210 011 1346899999999997655555444433 3322111112
Q ss_pred hHHHHHHHHHHHHHHHHhccCC----CCCCCcceEEEEEEeCCEEEEEEcCCccEEEE-eCCeeEeCCCCCCCCchHHHH
Q 023412 99 PQRSISKAYEKTDQAILSHSSD----LGRGGSTAVTAILINGQRLWVANVGDSRAVLS-TAGVAVQMTTDHEPNTERGSI 173 (282)
Q Consensus 99 ~~~~l~~~~~~~~~~l~~~~~~----~~~~~~tt~~~~~i~~~~~~~~~vGDsr~~l~-r~~~~~~lt~dh~~~~e~~ri 173 (282)
....|++++..+|.++...... ...++|||++++++.+++++++||||||+|++ |++++++||+||++. +++
T Consensus 454 ~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~---~~l 530 (645)
T PRK14559 454 DEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVG---QRE 530 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHH---HHH
Confidence 4577999999999999765322 23569999999999999999999999999998 578999999999754 444
Q ss_pred HhCCCeeecCCCCCCcccCcccccccccCCCCCCCCCCCceEEEEEecCCCeEEEEEcCCCCCC--CCH---HHHHHHHH
Q 023412 174 EDKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWKV--MSN---QEAVDIAR 248 (282)
Q Consensus 174 ~~~gg~~~~~~~~~~~~~~~~~ltralG~~~~~~~v~~~p~~~~~~l~~~~d~lll~SDGv~~~--l~~---~ei~~~~~ 248 (282)
.+.| ........ +.+...+||+||+...+ ..+|++..+.+.+ +|+||||||||||+ +.. +++..++.
T Consensus 531 v~~G-i~~~~a~~---~p~~~~LTrALG~~~~~---~l~Pdi~~~~L~~-gD~lLLCSDGL~D~~~ve~~~~~~l~~il~ 602 (645)
T PRK14559 531 IQRG-VEPQIAYA---RPDAYQLTQALGPRDNS---AIQPDIQFLEIEE-DTLLLLCSDGLSDNDLLETHWQTHLLPLLS 602 (645)
T ss_pred HHhC-CCHHHHhc---CcccceeeeccCCCCCC---cccceEEEEEcCC-CCEEEEECCCCCCCcccchHHHHHHHHHHh
Confidence 4444 22211111 23455999999986532 3589999999986 99999999999994 444 34566777
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEeC
Q 023412 249 KFKDPQKAAKQLTAEALKRDSKDDISCVVVRFR 281 (282)
Q Consensus 249 ~~~~~~~~a~~l~~~a~~~~~~DN~T~ivi~~~ 281 (282)
...+++++++.|++.|+.+++.||+|+|||+++
T Consensus 603 ~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~ 635 (645)
T PRK14559 603 SSANLDQGLNKLIDLANQYNGHDNITAILVRLK 635 (645)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEec
Confidence 777899999999999999999999999999985
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=7.7e-38 Score=267.78 Aligned_cols=241 Identities=46% Similarity=0.678 Sum_probs=202.7
Q ss_pred CceeEEEEeecCCCCCCCCceeeeeeeecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhcccCCc----chHHHHHH
Q 023412 30 GLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWV----DPQRSISK 105 (282)
Q Consensus 30 ~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~~~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~~----~~~~~l~~ 105 (282)
..+.++..+..|.|. +|||++++.... ..+..+|+|||||||..+|+++++.+.+.+.+...... .+...|++
T Consensus 4 ~~~~~~~~~~~~~r~-~neD~~~~~~~~--~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (255)
T smart00332 4 LGLRYGLSSMQGVRK-PMEDAHVITPDL--SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRK 80 (255)
T ss_pred CceeEEEecCCCCCC-CCcceEEEeccC--CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHH
Confidence 346777766666666 899999865321 24578999999999999999999999988876543332 47788999
Q ss_pred HHHHHHHHHHhccCCC--CCCCcceEEEEEEeCCEEEEEEcCCccEEEEeCCeeEeCCCCCCCC--chHHHHHhCCCeee
Q 023412 106 AYEKTDQAILSHSSDL--GRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPN--TERGSIEDKGGFVS 181 (282)
Q Consensus 106 ~~~~~~~~l~~~~~~~--~~~~~tt~~~~~i~~~~~~~~~vGDsr~~l~r~~~~~~lt~dh~~~--~e~~ri~~~gg~~~ 181 (282)
++..+++.+....... ...++||++++++..+.++++|+||||+|++|++++.+||.||++. .+..++...++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~ 160 (255)
T smart00332 81 AFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVI 160 (255)
T ss_pred HHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEE
Confidence 9999999998765432 2568999999999999999999999999999999999999999997 77788988887665
Q ss_pred cCCCCCCcccCcccccccccCCCCCCCCCCCceEEEEEecCCCeEEEEEcCCCCCCCCHHHHHHHHHccC---CHHHHHH
Q 023412 182 NMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWKVMSNQEAVDIARKFK---DPQKAAK 258 (282)
Q Consensus 182 ~~~~~~~~~~~~~~ltralG~~~~~~~v~~~p~~~~~~l~~~~d~lll~SDGv~~~l~~~ei~~~~~~~~---~~~~~a~ 258 (282)
. .+.++...+||++|...+++.+..+|++...++.+++|+|||||||||++++++++.+++.... ++.++++
T Consensus 161 ~-----~~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~ 235 (255)
T smart00332 161 N-----GRVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAK 235 (255)
T ss_pred C-----CeECCeEecccccCCHhhcCCeEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 2 1445567999999999888888899999999973359999999999999999999999998765 6999999
Q ss_pred HHHHHHHhcCCCCCcEEEEE
Q 023412 259 QLTAEALKRDSKDDISCVVV 278 (282)
Q Consensus 259 ~l~~~a~~~~~~DN~T~ivi 278 (282)
.|++.|.+++..||+|+|||
T Consensus 236 ~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 236 RLIDLALARGSKDNITVIVV 255 (255)
T ss_pred HHHHHHHHcCCCCCeEEEEC
Confidence 99999999999999999985
No 10
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-32 Score=231.27 Aligned_cols=156 Identities=38% Similarity=0.627 Sum_probs=139.9
Q ss_pred CCCCcceEEEEEEeCCEEEEEEcCCccEEEEeCCeeEeCCCCCCCC--chHHHHHhCCCeeecCCCCCCcccCccccccc
Q 023412 122 GRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPN--TERGSIEDKGGFVSNMPGDVPRVNGQLAVSRA 199 (282)
Q Consensus 122 ~~~~~tt~~~~~i~~~~~~~~~vGDsr~~l~r~~~~~~lt~dh~~~--~e~~ri~~~gg~~~~~~~~~~~~~~~~~ltra 199 (282)
....|||.+++++.+++++++|.||||+.+.|+|+..-++.||.|. .|..||..+||.+.- ..|+||.++|+|+
T Consensus 327 G~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtl----DGRVNGGLNLSRA 402 (542)
T KOG0699|consen 327 GEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTL----DGRVNGGLNLSRA 402 (542)
T ss_pred CCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEee----cceecCccchhhh
Confidence 4467899999999999999999999999999999999999999999 888999999999872 3599999999999
Q ss_pred ccCCCCCCC---------CCCCceEEEEEecCCCeEEEEEcCCCCCCCCHHHHHHHHHc----cCCHHHHHHHHHHHHHh
Q 023412 200 FGDKSLKSH---------LRSDPDIQNTILDGRSDVLVLASDGLWKVMSNQEAVDIARK----FKDPQKAAKQLTAEALK 266 (282)
Q Consensus 200 lG~~~~~~~---------v~~~p~~~~~~l~~~~d~lll~SDGv~~~l~~~ei~~~~~~----~~~~~~~a~~l~~~a~~ 266 (282)
||+..||+. |++-|++....|.++++|+||++||||++++.++++++++. .....++++.|++.++.
T Consensus 403 ~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLA 482 (542)
T KOG0699|consen 403 FGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLA 482 (542)
T ss_pred hhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence 999998853 78899999999998899999999999999999999888864 56778899999999987
Q ss_pred cC------CCCCcEEEEEEeC
Q 023412 267 RD------SKDDISCVVVRFR 281 (282)
Q Consensus 267 ~~------~~DN~T~ivi~~~ 281 (282)
.. ..||+|+|++.|.
T Consensus 483 p~T~GDGTGCDNMT~ii~~Fk 503 (542)
T KOG0699|consen 483 PSTDGDGTGCDNMTVIITTFK 503 (542)
T ss_pred CCCCCCCcCCCcceEEEEEec
Confidence 53 4599999999875
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=6.5e-30 Score=221.46 Aligned_cols=221 Identities=36% Similarity=0.483 Sum_probs=169.9
Q ss_pred CCCceeeeeeeecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhc------------c--------------------
Q 023412 46 PMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKE------------E-------------------- 93 (282)
Q Consensus 46 ~neD~~~~~~~~~~~~~~~~~~V~DG~Gg~~~a~~~~~~~~~~~~~~------------~-------------------- 93 (282)
.-||.+-+.... +.+++++||+|||||.++++++...++..+..+ .
T Consensus 84 ~~edrv~~~~s~--~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~ 161 (390)
T KOG0700|consen 84 AEEDRVSVAVSE--ENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSS 161 (390)
T ss_pred cccCcceeeeec--cCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccc
Confidence 466766544332 345899999999999999999999998877621 0
Q ss_pred --cCCcchHHHHHHHHHHHHHHHHhccC------CCCCCCcceEEEEEEeCCEEEEEEcCCccEEEEe---CC---eeEe
Q 023412 94 --EFWVDPQRSISKAYEKTDQAILSHSS------DLGRGGSTAVTAILINGQRLWVANVGDSRAVLST---AG---VAVQ 159 (282)
Q Consensus 94 --~~~~~~~~~l~~~~~~~~~~l~~~~~------~~~~~~~tt~~~~~i~~~~~~~~~vGDsr~~l~r---~~---~~~~ 159 (282)
.......+.|.+||.+..+.+...-. .+...+|+++++.++.++.+|++|+||||+.|-+ ++ ...|
T Consensus 162 ~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~q 241 (390)
T KOG0700|consen 162 ADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQ 241 (390)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEe
Confidence 00234578899999999998865332 1234566666666889999999999999999864 33 4689
Q ss_pred CCCCCCCC--chHHHHHhCCCeee-cCCCCCCcccCcccccccccCCCCC---------------------CCCCCCceE
Q 023412 160 MTTDHEPN--TERGSIEDKGGFVS-NMPGDVPRVNGQLAVSRAFGDKSLK---------------------SHLRSDPDI 215 (282)
Q Consensus 160 lt~dh~~~--~e~~ri~~~gg~~~-~~~~~~~~~~~~~~ltralG~~~~~---------------------~~v~~~p~~ 215 (282)
||.||+.. .|.+||+...---+ ..-..+.|..|.+++|||||+..+| |+++++|.+
T Consensus 242 LS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i 321 (390)
T KOG0700|consen 242 LSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSI 321 (390)
T ss_pred cChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceE
Confidence 99999998 88888886532100 0012235889999999999998888 458899999
Q ss_pred EEEEecCCCeEEEEEcCCCCCCCCHHHHHHHHHcc----CCHHHHHHHHHHHHHhcC
Q 023412 216 QNTILDGRSDVLVLASDGLWKVMSNQEAVDIARKF----KDPQKAAKQLTAEALKRD 268 (282)
Q Consensus 216 ~~~~l~~~~d~lll~SDGv~~~l~~~ei~~~~~~~----~~~~~~a~~l~~~a~~~~ 268 (282)
+.++|.+.+.||||+|||+|++++++|+++++.+. ..-+.+|+.|++.|+.+.
T Consensus 322 ~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 322 THHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred EEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 99999998889999999999999999999999873 233568999999887653
No 12
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.92 E-value=2e-23 Score=175.56 Aligned_cols=202 Identities=21% Similarity=0.237 Sum_probs=137.5
Q ss_pred CCCceeeeeeeecCCCceEEEEEEcCCCCC--------hHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHhc
Q 023412 46 PMEDYHVAKFVQLQGHELGLFAIYDGHLGE--------TVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSH 117 (282)
Q Consensus 46 ~neD~~~~~~~~~~~~~~~~~~V~DG~Gg~--------~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 117 (282)
..||++++..+ ....+.||+||+||| ..++.+.+.+-+.+.+......+|...|.+++.+. ..+
T Consensus 90 ~GEDa~Fvss~----~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l----~~~ 161 (330)
T KOG1379|consen 90 GGEDAWFVSSN----PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAEL----KSQ 161 (330)
T ss_pred CCCcceeeccC----cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHH----hhc
Confidence 58999987533 345799999999999 33444555555555555555567877776666554 332
Q ss_pred cCCCCCCCcceEEEEEEe--CCEEEEEEcCCccEEEEeCCeeEeCCCCCCCCchHHHHHhCCCeeecCCCCCCcccCccc
Q 023412 118 SSDLGRGGSTAVTAILIN--GQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGGFVSNMPGDVPRVNGQLA 195 (282)
Q Consensus 118 ~~~~~~~~~tt~~~~~i~--~~~~~~~~vGDsr~~l~r~~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~ 195 (282)
. .. .-|++|+++++++ +++|+++|+|||-..++|+|++..-|..+... +..++ ....+...
T Consensus 162 ~-~~-~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~-----------FN~Py----QLs~~p~~ 224 (330)
T KOG1379|consen 162 K-VP-IVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHY-----------FNTPY----QLSSPPEG 224 (330)
T ss_pred C-CC-CCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheec-----------cCCce----eeccCCcc
Confidence 1 11 2255555555555 88999999999999999999998888655211 11100 00000000
Q ss_pred ccccccCCCCCCCCCCCceEEEEEecCCCeEEEEEcCCCCCCCCHHHHHHHHHc-----cCCHHHHHHHHHHHHHhc---
Q 023412 196 VSRAFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWKVMSNQEAVDIARK-----FKDPQKAAKQLTAEALKR--- 267 (282)
Q Consensus 196 ltralG~~~~~~~v~~~p~~~~~~l~~~~d~lll~SDGv~~~l~~~ei~~~~~~-----~~~~~~~a~~l~~~a~~~--- 267 (282)
...++++.. -..+.+++.+++ ||+|||+|||+||++.+++|.+++.. ..+++..|+.|++.|...
T Consensus 225 ~~~~~~d~p------~~ad~~~~~v~~-GDvIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d 297 (330)
T KOG1379|consen 225 YSSYISDVP------DSADVTSFDVQK-GDVIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRD 297 (330)
T ss_pred ccccccCCc------cccceEEEeccC-CCEEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccC
Confidence 122233322 345678899997 99999999999999999999999865 357889999999988653
Q ss_pred --------------------CCCCCcEEEEEE
Q 023412 268 --------------------DSKDDISCVVVR 279 (282)
Q Consensus 268 --------------------~~~DN~T~ivi~ 279 (282)
|..||||+||..
T Consensus 298 ~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 298 PKFQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred cCcCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 457999999875
No 13
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.92 E-value=8.9e-24 Score=177.97 Aligned_cols=222 Identities=31% Similarity=0.469 Sum_probs=161.5
Q ss_pred CceEEEEEEcCCCCChHHHHHHHHHHHHHHhcc-------------------------cC---------------CcchH
Q 023412 61 HELGLFAIYDGHLGETVPAYLQKHLFSNILKEE-------------------------EF---------------WVDPQ 100 (282)
Q Consensus 61 ~~~~~~~V~DG~Gg~~~a~~~~~~~~~~~~~~~-------------------------~~---------------~~~~~ 100 (282)
.+..+|.+||||.|+.+|-.+++.+...+.... +. +.-..
T Consensus 142 ~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LVi 221 (493)
T KOG1323|consen 142 ADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVI 221 (493)
T ss_pred CcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhH
Confidence 456899999999999888777765544332210 00 00124
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCcceEEEEEEeCCEEEEEEcCCccEEEEeCCeeEeCCCCCCCCchHHHHHhCCCee
Q 023412 101 RSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGGFV 180 (282)
Q Consensus 101 ~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~i~~~~~~~~~vGDsr~~l~r~~~~~~lt~dh~~~~e~~ri~~~gg~~ 180 (282)
..|..||++.++.|.+..+.....||||+.+++.--+++|++|.||||++++|++++++|+++.++..|++|+...+-..
T Consensus 222 GAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~Laf~~ 301 (493)
T KOG1323|consen 222 GALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQELAFRN 301 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHHhhcC
Confidence 66888999998888876665556677887777778999999999999999999999999999999999999998763211
Q ss_pred ec----------C----------------------------------------CCCCCcccCcccccccccCCCCC----
Q 023412 181 SN----------M----------------------------------------PGDVPRVNGQLAVSRAFGDKSLK---- 206 (282)
Q Consensus 181 ~~----------~----------------------------------------~~~~~~~~~~~~ltralG~~~~~---- 206 (282)
++ + .+...|.-.-..+||-||+..++
T Consensus 302 PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~ds 381 (493)
T KOG1323|consen 302 PELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVVDS 381 (493)
T ss_pred hHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeeecC
Confidence 10 0 00111122335688899986554
Q ss_pred -----CCCCCCceEEEEEecC----CCeEEEEEcCCCCCCCCHHHHHHHHHcc------CCH---HHHHHHHHHHHHh--
Q 023412 207 -----SHLRSDPDIQNTILDG----RSDVLVLASDGLWKVMSNQEAVDIARKF------KDP---QKAAKQLTAEALK-- 266 (282)
Q Consensus 207 -----~~v~~~p~~~~~~l~~----~~d~lll~SDGv~~~l~~~ei~~~~~~~------~~~---~~~a~~l~~~a~~-- 266 (282)
|.++..|++....+.+ .+|++||+|||+||.++++|+..+++.. .+| ..+|+.|+..|..
T Consensus 382 nl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg~~ 461 (493)
T KOG1323|consen 382 NLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARGQQ 461 (493)
T ss_pred CcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcCcc
Confidence 5678889999888862 4789999999999999999998888752 233 2467777776632
Q ss_pred -----------cCCCCCcEEEEEEeCC
Q 023412 267 -----------RDSKDDISCVVVRFRG 282 (282)
Q Consensus 267 -----------~~~~DN~T~ivi~~~g 282 (282)
.++.||||+-||-+.+
T Consensus 462 k~rgWr~~n~~lgSgDDIsVfVIPL~~ 488 (493)
T KOG1323|consen 462 KDRGWRMNNGGLGSGDDISVFVIPLKY 488 (493)
T ss_pred CCCceeccCCCcCCCCceEEEEEeccC
Confidence 1467999999997753
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=1.8e-21 Score=183.38 Aligned_cols=245 Identities=26% Similarity=0.392 Sum_probs=202.7
Q ss_pred CCceeEEEEeecCCCCCCCCceeeeeeeecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhcccCCcchHHHHHHHHH
Q 023412 29 VGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYE 108 (282)
Q Consensus 29 ~~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~~~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (282)
..-.++|++...|.|++.+-=+..+. ..-+.....|+++||-+..+..+++...+.+.+.++.....+-.+.|+++|.
T Consensus 519 ~~~~t~Gv~~~~gqrnk~c~~~~~v~--nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr~~fl 596 (1081)
T KOG0618|consen 519 AFLWTYGVAGVSGQRNKVCSRAVWVE--NFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMRNTFL 596 (1081)
T ss_pred eeheeeccchhcccccchhhhhhhhh--hcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 34456999999999985333232221 2122334799999999999999999999888888776665556677999999
Q ss_pred HHHHHHHhccCCCCCCCcceEEEEEEeC-------CEEEEEEcCCccEEEEeCCeeEeCCCCCCCC---chHHHHHhCCC
Q 023412 109 KTDQAILSHSSDLGRGGSTAVTAILING-------QRLWVANVGDSRAVLSTAGVAVQMTTDHEPN---TERGSIEDKGG 178 (282)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~tt~~~~~i~~-------~~~~~~~vGDsr~~l~r~~~~~~lt~dh~~~---~e~~ri~~~gg 178 (282)
..|+++...+... ++..+.+-+.++ .++..||+|+|++.+.++|+..++|+-.... .|.+||....|
T Consensus 597 ~~~rklg~~g~~l---g~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g 673 (1081)
T KOG0618|consen 597 RLNRKLGEEGQVL---GGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKG 673 (1081)
T ss_pred HHhhhhhhhhccc---cchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcC
Confidence 9999997766654 444444444332 4788999999999999999988888765333 89999999999
Q ss_pred eeecCCCCCCcccCcccccccccCCCCCCCCCCCceEEEEEecCCCeEEEEEcCCCCCCCCHHHHHHHHHccCCHHHHHH
Q 023412 179 FVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWKVMSNQEAVDIARKFKDPQKAAK 258 (282)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ltralG~~~~~~~v~~~p~~~~~~l~~~~d~lll~SDGv~~~l~~~ei~~~~~~~~~~~~~a~ 258 (282)
++.. ..+.+|....||++|.+...|.|.+.|++....|.+.+++||+++-++|++++.+++.+.+++..+|-.+|+
T Consensus 674 ~i~e----d~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAk 749 (1081)
T KOG0618|consen 674 FITE----DNKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAK 749 (1081)
T ss_pred eecC----CCeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHHH
Confidence 9873 457888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEEEeCC
Q 023412 259 QLTAEALKRDSKDDISCVVVRFRG 282 (282)
Q Consensus 259 ~l~~~a~~~~~~DN~T~ivi~~~g 282 (282)
.|++.|+++|..||++++||++.+
T Consensus 750 KL~d~AqSYgc~~nv~vlVv~l~~ 773 (1081)
T KOG0618|consen 750 KLCDLAQSYGCAENVSVLVVRLNH 773 (1081)
T ss_pred HHHHHHHhcccccCeeEEEEEeec
Confidence 999999999999999999999864
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.86 E-value=6.3e-21 Score=158.89 Aligned_cols=178 Identities=20% Similarity=0.265 Sum_probs=95.8
Q ss_pred EeecCCCCCCCCceeeeeeeecCCCceEEEEEEcCCCCChH----HHHHHHHHHHHHHhcccCCcch--HHHHHHHHHHH
Q 023412 37 SLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETV----PAYLQKHLFSNILKEEEFWVDP--QRSISKAYEKT 110 (282)
Q Consensus 37 ~s~~G~~~~~neD~~~~~~~~~~~~~~~~~~V~DG~Gg~~~----a~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 110 (282)
.+++|.+. +|||++.+... ++..+++|+||+|+... |..+++.+.+.+.+........ ...++.+..++
T Consensus 3 ~sh~~~~~-~nqD~~~~~~~----~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 77 (212)
T PF13672_consen 3 RSHRGRGA-PNQDAFGIRTD----DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEI 77 (212)
T ss_dssp ----TTSS-S--EEEEEE-T----CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCC-CCCCCEEeeeC----CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 46788887 89999984432 22346699999998754 4555555555555443322111 22223333333
Q ss_pred HHHH-----HhccCCCCCCCcceEEEEEEeCCEEEEEEcCCccEEE-EeCCeeEeCCCCCCCCchHHHHHhCCCeeecCC
Q 023412 111 DQAI-----LSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVL-STAGVAVQMTTDHEPNTERGSIEDKGGFVSNMP 184 (282)
Q Consensus 111 ~~~l-----~~~~~~~~~~~~tt~~~~~i~~~~~~~~~vGDsr~~l-~r~~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~ 184 (282)
...+ ..........++||++++++.++.++++|+||||+|+ .+++++.+++.+|+.. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~-----~~---------- 142 (212)
T PF13672_consen 78 LSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGE-----YP---------- 142 (212)
T ss_dssp HHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHH-----HH----------
T ss_pred HHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccch-----hh----------
Confidence 2211 1111334467899999999999999999999999975 5799999999999411 11
Q ss_pred CCCCcccCcccccccccCCCCCCCCCCCceEEEEEecCCCeEEEEEcCCCCCCCCHHH-HHHHHHc
Q 023412 185 GDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWKVMSNQE-AVDIARK 249 (282)
Q Consensus 185 ~~~~~~~~~~~ltralG~~~~~~~v~~~p~~~~~~l~~~~d~lll~SDGv~~~l~~~e-i~~~~~~ 249 (282)
..++.+..... ....++..+.+.+ ++.|+|||||||+.+...+ +..++..
T Consensus 143 ----------~~~~~~~~~~~----~~~~~~~~~~~~~-~d~ilL~SDG~~~~l~~~~~~~~~l~~ 193 (212)
T PF13672_consen 143 ----------NQTRSLTGDDP----EPDVQYGSIPLEE-GDVILLCSDGVWDNLRSYEDLEQFLKD 193 (212)
T ss_dssp ----------HCTTSCCHHCC----CTETEEEEEE--T-T-EEEEE-HHHHTTS-HHHHHHHH---
T ss_pred ----------hhhhccCcccc----ccCCeEEEEEcCC-CCEEEEECcCccccCCCHHHHHHHhhh
Confidence 11222222110 2334667777776 9999999999999998655 6666654
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.81 E-value=1.5e-17 Score=136.57 Aligned_cols=184 Identities=20% Similarity=0.168 Sum_probs=131.3
Q ss_pred eeEEEEeecCCCCCCCCceeeeeeeecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHH
Q 023412 32 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTD 111 (282)
Q Consensus 32 ~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~~~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (282)
+.++.....+.. .+.|.+.+... +++..+++|+||||+...|..++..+...+.+....... +.+.+..++
T Consensus 4 ~~~~~~~~p~~~--~~GD~~~~~~~---~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~----~~~~l~~~n 74 (193)
T smart00331 4 GLIAQYYEDATQ--VGGDFYDVVKL---PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGIS----LSQILERLN 74 (193)
T ss_pred eEEEEEEcchHh--cCccEEEEEEe---CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCC----HHHHHHHHH
Confidence 345555555553 48899865432 233589999999999888888888777777644332222 455666777
Q ss_pred HHHHhccCCCCCCCcceEEEEEE--eCCEEEEEEcCCccEEEEe-CCeeEeCCCCCCCCchHHHHHhCCCeeecCCCCCC
Q 023412 112 QAILSHSSDLGRGGSTAVTAILI--NGQRLWVANVGDSRAVLST-AGVAVQMTTDHEPNTERGSIEDKGGFVSNMPGDVP 188 (282)
Q Consensus 112 ~~l~~~~~~~~~~~~tt~~~~~i--~~~~~~~~~vGDsr~~l~r-~~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~ 188 (282)
+.+..... ...++|++++++ ..++++++|+||+|+|+++ ++...+++.+.
T Consensus 75 ~~l~~~~~---~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~------------------------ 127 (193)
T smart00331 75 RAIYENGE---DGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL------------------------ 127 (193)
T ss_pred HHHHhcCC---CCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC------------------------
Confidence 77766522 336777777776 5889999999999999998 55544444432
Q ss_pred cccCcccccccccCCCCCCCCCCCceEEEEEecCCCeEEEEEcCCCCCCCCHHHHHHHHHcc--CCHHHHHHHHHHHHH
Q 023412 189 RVNGQLAVSRAFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWKVMSNQEAVDIARKF--KDPQKAAKQLTAEAL 265 (282)
Q Consensus 189 ~~~~~~~ltralG~~~~~~~v~~~p~~~~~~l~~~~d~lll~SDGv~~~l~~~ei~~~~~~~--~~~~~~a~~l~~~a~ 265 (282)
+..+|... ..+++...+.+.+ +|.|+|+|||+++.+.++++.+++.+. .+++++++.|++.+.
T Consensus 128 --------~~~lG~~~-----~~~~~~~~~~l~~-gd~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 128 --------GAPLGLEP-----DVEVDVRELTLEP-GDLLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQRILEELL 192 (193)
T ss_pred --------CceeeeCC-----CCcceeEEEeeCC-CCEEEEECCCccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 23445433 3456778888887 999999999999999999999999874 468888988888764
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.77 E-value=5.2e-17 Score=157.46 Aligned_cols=211 Identities=18% Similarity=0.138 Sum_probs=143.9
Q ss_pred CCCCCCCCCCceeEEEEeecCCCCCCCCceeeeeeeecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhcccCCcchH
Q 023412 21 STGKGRSNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQ 100 (282)
Q Consensus 21 ~~~~~~~~~~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~~~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~~~~~ 100 (282)
.-...+.+...+.++.+...-.....+.|.+.+... +++...++|+||+|....|...+..+.+.+.+......++
T Consensus 541 ~i~f~e~~~~~~~~g~a~~~k~g~~vsGD~y~~~~l---~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~~- 616 (764)
T TIGR02865 541 HLTFEETPKYHVSTGVARAAKDGELVSGDSYSFGKL---SAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFDR- 616 (764)
T ss_pred EEEEecCCceeehhhHHHhcCCCCcccCceEEEEEE---CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCCH-
Confidence 333444555566666665555555589999865432 2335789999999977666555554444333211111122
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCcceEEEEEEe--CCEEEEEEcCCccEEEEeCCeeEeCCCCCCCCchHHHHHhCCC
Q 023412 101 RSISKAYEKTDQAILSHSSDLGRGGSTAVTAILIN--GQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGG 178 (282)
Q Consensus 101 ~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~i~--~~~~~~~~vGDsr~~l~r~~~~~~lt~dh~~~~e~~ri~~~gg 178 (282)
..++..+|..+...... ...+|+.+++++ .+++.++++|+++.|+.|++++.+++..+.|
T Consensus 617 ---~~ai~~lN~~L~~~~~~---~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP------------ 678 (764)
T TIGR02865 617 ---EVAIKTVNSILSLRSTD---EKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP------------ 678 (764)
T ss_pred ---HHHHHHHHHHHHhCCCC---CeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce------------
Confidence 45677777777554322 256777777775 6899999999999999999988887654422
Q ss_pred eeecCCCCCCcccCcccccccccCCCCCCCCCCCceEEEEEecCCCeEEEEEcCCCCCCCCHHH-----HHHHHHc--cC
Q 023412 179 FVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWKVMSNQE-----AVDIARK--FK 251 (282)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ltralG~~~~~~~v~~~p~~~~~~l~~~~d~lll~SDGv~~~l~~~e-----i~~~~~~--~~ 251 (282)
+|-.. ..+++..+.++.+ ||.|+++|||++|..++.+ +.+++++ ..
T Consensus 679 ---------------------lGil~-----~~~~~~~~~~L~~-GD~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~ 731 (764)
T TIGR02865 679 ---------------------IGILD-----EVDVELVRKKLKN-GDLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTN 731 (764)
T ss_pred ---------------------eEecc-----CCccceEEEEeCC-CCEEEEECCCCCcCCcccccHHHHHHHHHHhcCCC
Confidence 12111 2456777888887 9999999999999876433 6677764 46
Q ss_pred CHHHHHHHHHHHHHhcC---CCCCcEEEEEEe
Q 023412 252 DPQKAAKQLTAEALKRD---SKDDISCVVVRF 280 (282)
Q Consensus 252 ~~~~~a~~l~~~a~~~~---~~DN~T~ivi~~ 280 (282)
+|+++++.|++.+.+.. ..||+|++++++
T Consensus 732 ~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 732 DPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 89999999999998653 479999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.62 E-value=1.8e-13 Score=112.19 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=113.5
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHhccCCCCCCCcceEEEEEEe--CCEE
Q 023412 62 ELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILIN--GQRL 139 (282)
Q Consensus 62 ~~~~~~V~DG~Gg~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~i~--~~~~ 139 (282)
+.++++|+|++|..-.|.+.+..+...+......... ..+.+..+|+.+....... ...+|++++.++ .+.+
T Consensus 3 ~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~l 76 (193)
T PF07228_consen 3 GRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGTL 76 (193)
T ss_dssp TEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTEE
T ss_pred CEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceEE
Confidence 4578999999996655655555554444333222222 4556666677664433321 244555555554 6789
Q ss_pred EEEEcCCccEEEEeCC--eeEeCCCCCCCCchHHHHHhCCCeeecCCCCCCcccCcccccccccCCCCCCCCCCCceEEE
Q 023412 140 WVANVGDSRAVLSTAG--VAVQMTTDHEPNTERGSIEDKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQN 217 (282)
Q Consensus 140 ~~~~vGDsr~~l~r~~--~~~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~ltralG~~~~~~~v~~~p~~~~ 217 (282)
+++++|++++++++++ ....+.... -.||... ..++...+
T Consensus 77 ~~~~aG~~~~l~~~~~~~~~~~~~~~~---------------------------------~~lG~~~-----~~~~~~~~ 118 (193)
T PF07228_consen 77 TYANAGHPPPLLLRPGGREIEQLESEG---------------------------------PPLGIFE-----DIDYQEQE 118 (193)
T ss_dssp EEEEESSSEEEEEETTCTEEEEETCSS---------------------------------BBCSSSC-----TTCEEEEE
T ss_pred EEeCCCCCCEEEEeccccceeecccCc---------------------------------cceeeec-----cccccceE
Confidence 9999999999999983 333332221 1134332 34566777
Q ss_pred EEecCCCeEEEEEcCCCCCCCCHH-------HHHHHHHc--cCCHHHHHHHHHHHHHhc---CCCCCcEEEEEEeC
Q 023412 218 TILDGRSDVLVLASDGLWKVMSNQ-------EAVDIARK--FKDPQKAAKQLTAEALKR---DSKDDISCVVVRFR 281 (282)
Q Consensus 218 ~~l~~~~d~lll~SDGv~~~l~~~-------ei~~~~~~--~~~~~~~a~~l~~~a~~~---~~~DN~T~ivi~~~ 281 (282)
+.+.+ ||.|+|+|||+++....+ .+.+++.+ ..++++.++.|.+.+... ...||+|+|+++++
T Consensus 119 ~~l~~-gd~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 119 IQLEP-GDRLLLYTDGLFEALNEDGEFFGEERLLELLDENRGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp EE--T-TEEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCHTTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred EEecc-ccEEEEeCCChhhccCCccchhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 88886 999999999999998544 34566663 467999999999999873 46799999999975
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.89 E-value=6.2e-07 Score=80.95 Aligned_cols=187 Identities=16% Similarity=0.104 Sum_probs=119.3
Q ss_pred CCCceeeeeeeecCCCceEEEEEEcCCC-CChHHHHHHHHHHHHHHhcccC-CcchHHHHHHHHHHHHHHHHhccCCCCC
Q 023412 46 PMEDYHVAKFVQLQGHELGLFAIYDGHL-GETVPAYLQKHLFSNILKEEEF-WVDPQRSISKAYEKTDQAILSHSSDLGR 123 (282)
Q Consensus 46 ~neD~~~~~~~~~~~~~~~~~~V~DG~G-g~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 123 (282)
-.-|.|-+.... .....++|.|..| |-.+|-. .......+...... ..++.. .+...|+.+.......
T Consensus 161 vGGD~yd~~~~~---~~~~~i~I~DvsG~Gv~aal~-m~~~~~~~~~~~~~~~~~p~~----~l~~~n~~~~~~~~~~-- 230 (367)
T COG2208 161 VGGDYYDFIQLG---EKRLRIGIGDVSGKGVPAALL-MLMPKLALRLLLESGPLDPAD----VLETLNRVLKQNLEED-- 230 (367)
T ss_pred cCCceEEEEEEC---CcEEEEEEEeccCCCHHHHHH-HHHHHHHHHHhhhcccCCHHH----HHHHHHHHHHhcccCC--
Confidence 466776543332 2467899999988 4444443 22222222211111 233433 4555555555443322
Q ss_pred CCcceEEEEEEe--CCEEEEEEcCCccEEEEeCCee---EeCCCCCCCCchHHHHHhCCCeeecCCCCCCcccCcccccc
Q 023412 124 GGSTAVTAILIN--GQRLWVANVGDSRAVLSTAGVA---VQMTTDHEPNTERGSIEDKGGFVSNMPGDVPRVNGQLAVSR 198 (282)
Q Consensus 124 ~~~tt~~~~~i~--~~~~~~~~vGDsr~~l~r~~~~---~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~ltr 198 (282)
..+|+...+++ .+.+.++++|--..++++.+.. ..+. ....
T Consensus 231 -~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~---------------------------------~~g~ 276 (367)
T COG2208 231 -MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLT---------------------------------ALGL 276 (367)
T ss_pred -cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEcc---------------------------------CCCc
Confidence 66777766665 6799999999999999986532 2222 2334
Q ss_pred cccCCCCCCCCCCCceEEEEEecCCCeEEEEEcCCCCC-------CCCHHHHHHHHH--ccCCHHHHHHHHHHHHHhcC-
Q 023412 199 AFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWK-------VMSNQEAVDIAR--KFKDPQKAAKQLTAEALKRD- 268 (282)
Q Consensus 199 alG~~~~~~~v~~~p~~~~~~l~~~~d~lll~SDGv~~-------~l~~~ei~~~~~--~~~~~~~~a~~l~~~a~~~~- 268 (282)
.+|..+ ...+.+...++.+ ||.+++.||||.+ .+..+.....+. ...+++++++.+++.....-
T Consensus 277 piG~~~-----~~~~~~~~~~l~~-gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~~ 350 (367)
T COG2208 277 PIGLLP-----DYQYEVASLQLEP-GDLLVLYTDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEELQG 350 (367)
T ss_pred eeeecC-----CccchheeEEecC-CCEEEEEcCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Confidence 455443 4566777888887 9999999999998 455666666665 24688999988888886642
Q ss_pred ---CCCCcEEEEEEeCC
Q 023412 269 ---SKDDISCVVVRFRG 282 (282)
Q Consensus 269 ---~~DN~T~ivi~~~g 282 (282)
..||+|++++++..
T Consensus 351 ~~~~~DDiTll~lk~~~ 367 (367)
T COG2208 351 DQIQDDDITLLVLKVKK 367 (367)
T ss_pred CccccCceEEEEEEecC
Confidence 35889999999863
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=86.23 E-value=13 Score=32.50 Aligned_cols=104 Identities=11% Similarity=0.010 Sum_probs=55.1
Q ss_pred CCceeeeeeeecCCCceEEEEEEc--CCCCCh-HHHHHHHHHHHHHHhccc-CCcchHHHHHHHHHHHHHHHHhccCCCC
Q 023412 47 MEDYHVAKFVQLQGHELGLFAIYD--GHLGET-VPAYLQKHLFSNILKEEE-FWVDPQRSISKAYEKTDQAILSHSSDLG 122 (282)
Q Consensus 47 neD~~~~~~~~~~~~~~~~~~V~D--G~Gg~~-~a~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 122 (282)
.-|.+-+.. .. ++...|.++| |||++. .|......++..++.... ..........+.+..+|+.+.......
T Consensus 150 ~GD~~d~~~--l~-~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~~~p~~~l~~lN~~l~~~~~~~- 225 (303)
T PRK10693 150 PGLVLDIAA--LS-DNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPG- 225 (303)
T ss_pred CccEEeeee--cC-CCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHhcCCCc-
Confidence 556654222 12 3345667777 888774 445555555554443311 000000013456667777766543222
Q ss_pred CCCcceEEEEEEe--CCEEEEEEcCCccEEEEeCCee
Q 023412 123 RGGSTAVTAILIN--GQRLWVANVGDSRAVLSTAGVA 157 (282)
Q Consensus 123 ~~~~tt~~~~~i~--~~~~~~~~vGDsr~~l~r~~~~ 157 (282)
. -|+...+++ .+.+.+++.|....++..++++
T Consensus 226 --~-~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 226 --Q-FPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred --e-eeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 2 244444554 5689999999999885444444
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=59.87 E-value=5.7 Score=26.73 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=13.6
Q ss_pred CCeEEEEEcCCCCCCC
Q 023412 223 RSDVLVLASDGLWKVM 238 (282)
Q Consensus 223 ~~d~lll~SDGv~~~l 238 (282)
.|..+|+++||+|=-+
T Consensus 26 ~G~Rllva~nGv~lEv 41 (72)
T PF09436_consen 26 PGHRLLVASNGVFLEV 41 (72)
T ss_pred CCcEEEEecCcEEEEE
Confidence 5999999999999443
No 22
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=56.15 E-value=8.6 Score=27.38 Aligned_cols=48 Identities=21% Similarity=0.368 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCCCCCHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCc
Q 023412 223 RSDVLVLASDGLWKVMSNQEAVDIARKFKDPQKAAKQLTAEALKRDSKDDI 273 (282)
Q Consensus 223 ~~d~lll~SDGv~~~l~~~ei~~~~~~~~~~~~~a~~l~~~a~~~~~~DN~ 273 (282)
++|.++|+.|||+-.+...+..+-++.. | ..+=.|.+...++|-.+.+
T Consensus 24 ~~D~vlL~qdGV~aAl~~~~~~~sl~~~--p-~~~~alkeDl~ARGl~~~~ 71 (96)
T COG2168 24 EGDAVLLLQDGVYAALKGNRYLASLRES--P-IKVYALKEDLLARGLTGQI 71 (96)
T ss_pred ccCeEEEEcccchhhhcCcHHHHHHhcC--c-cceeeehhhHHhccchhhc
Confidence 5999999999999999888877777663 2 2233455556666655433
No 23
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=47.37 E-value=39 Score=27.26 Aligned_cols=45 Identities=27% Similarity=0.502 Sum_probs=33.7
Q ss_pred CeEEEEEcCCCC-----------CCCCHHHHHHHHHc----cCCHHHHHHHHHHHHHhcC
Q 023412 224 SDVLVLASDGLW-----------KVMSNQEAVDIARK----FKDPQKAAKQLTAEALKRD 268 (282)
Q Consensus 224 ~d~lll~SDGv~-----------~~l~~~ei~~~~~~----~~~~~~~a~~l~~~a~~~~ 268 (282)
+|.+|..|.|+| |+|..+.+=+.+.+ ..-|.+.|..|++.-+++|
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 788999999999 34444444444543 3678999999999988876
No 24
>PF04077 DsrH: DsrH like protein; InterPro: IPR007215 The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulphur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulphide moiety, delivered by the cysteine desulphurase IscS to TusA, then to TusBCD. The activated sulphur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulphur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulphur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulphur flux, such as oxidation from sulphide to molecular sulphur to sulphate [].; GO: 0002143 tRNA wobble position uridine thiolation, 0005737 cytoplasm; PDB: 2HYB_O 2HY5_C 1X9A_A 1RHX_A 2D1P_C.
Probab=22.04 E-value=18 Score=25.38 Aligned_cols=26 Identities=15% Similarity=0.450 Sum_probs=18.7
Q ss_pred CCeEEEEEcCCCCCCCCHHHHHHHHH
Q 023412 223 RSDVLVLASDGLWKVMSNQEAVDIAR 248 (282)
Q Consensus 223 ~~d~lll~SDGv~~~l~~~ei~~~~~ 248 (282)
++|.|||.-|||+-.+........+.
T Consensus 18 ~~D~ilLiqDgV~~a~~~~~~~~~l~ 43 (88)
T PF04077_consen 18 EGDAILLIQDGVYAALKGSPYFKLLQ 43 (88)
T ss_dssp TT-EEEE-GGGGGGGBTTSTTHHHHH
T ss_pred CCCEEEeeHHHHHHHhcCCHHHHHHh
Confidence 59999999999998887666555554
No 25
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=21.36 E-value=1.5e+02 Score=19.13 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHc-cCCHHHHHHHHHH
Q 023412 238 MSNQEAVDIARK-FKDPQKAAKQLTA 262 (282)
Q Consensus 238 l~~~ei~~~~~~-~~~~~~~a~~l~~ 262 (282)
.+++||...+.. .-+|.+++++|+.
T Consensus 19 hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 578899888876 6799999999886
No 26
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=20.78 E-value=1.4e+02 Score=25.87 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=32.2
Q ss_pred EEEEEc-CCCCChHHHHHHHHHHHHHH----hc--ccCCcchHHHHHHHHHHHHHHHHhcc
Q 023412 65 LFAIYD-GHLGETVPAYLQKHLFSNIL----KE--EEFWVDPQRSISKAYEKTDQAILSHS 118 (282)
Q Consensus 65 ~~~V~D-G~Gg~~~a~~~~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~l~~~~ 118 (282)
-.|||| |+||--..+.+.+.+.++-+ +. -++..-..+.+++...++-..+..+.
T Consensus 7 ~IgvFDSGVGGLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ 67 (269)
T COG0796 7 PIGVFDSGVGGLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERG 67 (269)
T ss_pred eEEEEECCCCcHHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 568999 89999988888887765432 11 12222334555555555555555543
No 27
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=20.78 E-value=1.5e+02 Score=15.49 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=15.7
Q ss_pred EeCCEEEEEEcCCccEEEE
Q 023412 134 INGQRLWVANVGDSRAVLS 152 (282)
Q Consensus 134 i~~~~~~~~~vGDsr~~l~ 152 (282)
-.++.+|++-.|..|+..+
T Consensus 10 ~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 10 DSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp ETTSEEEEEECCCTEEEEE
T ss_pred eCCCCEEEEECCCCEEEEC
Confidence 3788999999999988764
Done!