Query 023413
Match_columns 282
No_of_seqs 139 out of 1796
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:50:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06027 DUF914: Eukaryotic pr 100.0 2.4E-33 5.3E-38 239.9 27.6 280 3-282 1-288 (334)
2 PRK11272 putative DMT superfam 100.0 1.3E-27 2.9E-32 205.1 27.3 262 8-281 2-267 (292)
3 PRK11689 aromatic amino acid e 100.0 1.2E-26 2.6E-31 199.4 25.7 258 14-281 4-269 (295)
4 PLN00411 nodulin MtN21 family 100.0 2.5E-26 5.4E-31 200.7 26.9 270 8-281 8-310 (358)
5 TIGR00950 2A78 Carboxylate/Ami 100.0 1.4E-26 2.9E-31 195.8 24.3 243 26-281 1-246 (260)
6 PRK15430 putative chlorampheni 100.0 2.9E-26 6.4E-31 197.1 25.7 253 8-281 2-267 (296)
7 PRK11453 O-acetylserine/cystei 100.0 1.5E-25 3.3E-30 193.0 27.6 253 17-281 7-269 (299)
8 KOG2766 Predicted membrane pro 99.9 6.4E-29 1.4E-33 198.0 4.0 277 2-282 5-282 (336)
9 PRK10532 threonine and homoser 99.9 2.2E-25 4.9E-30 191.3 26.3 256 9-281 7-263 (293)
10 TIGR00817 tpt Tpt phosphate/ph 99.9 4.9E-25 1.1E-29 190.2 22.0 243 30-281 18-275 (302)
11 TIGR00688 rarD rarD protein. T 99.9 1.5E-23 3.3E-28 176.7 24.6 242 14-274 2-255 (256)
12 PTZ00343 triose or hexose phos 99.9 6.7E-23 1.5E-27 179.7 26.1 259 13-281 48-330 (350)
13 TIGR03340 phn_DUF6 phosphonate 99.9 4.6E-23 1E-27 176.1 19.8 253 16-281 3-265 (281)
14 COG0697 RhaT Permeases of the 99.9 1E-19 2.2E-24 155.8 27.7 260 11-281 4-269 (292)
15 KOG4510 Permease of the drug/m 99.9 9.2E-22 2E-26 158.2 9.7 269 6-281 30-307 (346)
16 TIGR00776 RhaT RhaT L-rhamnose 99.8 9.3E-18 2E-22 143.6 24.7 250 15-281 2-266 (290)
17 COG2962 RarD Predicted permeas 99.8 9.8E-18 2.1E-22 137.6 22.6 250 10-281 3-265 (293)
18 PF08449 UAA: UAA transporter 99.8 7E-17 1.5E-21 139.4 27.0 254 28-281 14-279 (303)
19 COG5006 rhtA Threonine/homoser 99.7 1.2E-15 2.7E-20 122.3 22.8 236 29-281 27-264 (292)
20 KOG1441 Glucose-6-phosphate/ph 99.7 1.3E-15 2.8E-20 129.4 12.8 244 29-281 32-289 (316)
21 KOG2765 Predicted membrane pro 99.7 1.6E-14 3.5E-19 122.1 19.1 269 9-281 9-372 (416)
22 PF04142 Nuc_sug_transp: Nucle 99.6 1.2E-13 2.6E-18 114.8 22.3 209 69-281 12-235 (244)
23 COG2510 Predicted membrane pro 99.6 2E-14 4.3E-19 103.4 12.8 129 16-146 5-139 (140)
24 KOG1581 UDP-galactose transpor 99.5 3.9E-11 8.5E-16 99.2 25.0 237 40-281 47-295 (327)
25 PF00892 EamA: EamA-like trans 99.4 6.5E-13 1.4E-17 99.2 7.0 118 24-144 1-124 (126)
26 TIGR00950 2A78 Carboxylate/Ami 99.3 2.3E-11 5E-16 102.7 14.0 132 11-142 125-260 (260)
27 KOG2234 Predicted UDP-galactos 99.3 3.2E-09 6.9E-14 90.3 26.6 261 17-281 18-304 (345)
28 PF13536 EmrE: Multidrug resis 99.3 1.1E-11 2.3E-16 91.2 8.1 101 49-150 2-110 (113)
29 KOG3912 Predicted integral mem 99.3 2.1E-09 4.6E-14 88.0 20.3 172 40-211 35-227 (372)
30 KOG1444 Nucleotide-sugar trans 99.2 2.1E-09 4.6E-14 90.0 19.3 258 14-281 12-282 (314)
31 PF06800 Sugar_transport: Suga 99.2 4.2E-09 9.1E-14 87.6 19.3 201 72-280 43-248 (269)
32 KOG1443 Predicted integral mem 99.2 8.8E-09 1.9E-13 85.5 19.1 250 24-281 22-297 (349)
33 KOG1580 UDP-galactose transpor 99.1 3.5E-10 7.5E-15 90.3 8.8 252 24-281 23-295 (337)
34 PRK11272 putative DMT superfam 99.1 2.9E-09 6.2E-14 91.6 12.5 132 12-146 148-285 (292)
35 PLN00411 nodulin MtN21 family 99.0 5E-09 1.1E-13 92.1 12.7 137 12-149 187-331 (358)
36 PRK10532 threonine and homoser 99.0 8E-09 1.7E-13 88.8 13.7 134 12-148 146-283 (293)
37 KOG4314 Predicted carbohydrate 99.0 1E-08 2.2E-13 79.9 11.9 103 81-189 60-162 (290)
38 COG5070 VRG4 Nucleotide-sugar 99.0 1.6E-08 3.4E-13 80.3 12.3 239 40-281 33-278 (309)
39 PRK11689 aromatic amino acid e 98.9 1.7E-08 3.7E-13 86.9 12.1 130 13-147 155-288 (295)
40 TIGR03340 phn_DUF6 phosphonate 98.9 2E-08 4.4E-13 85.8 11.0 131 13-143 143-280 (281)
41 PRK11453 O-acetylserine/cystei 98.9 4.8E-08 1E-12 84.2 13.3 137 12-148 141-289 (299)
42 PF03151 TPT: Triose-phosphate 98.9 7.1E-08 1.5E-12 74.6 12.9 129 15-143 1-150 (153)
43 KOG1583 UDP-N-acetylglucosamin 98.8 2E-08 4.4E-13 82.2 8.5 251 31-281 20-296 (330)
44 KOG1582 UDP-galactose transpor 98.8 1.1E-07 2.3E-12 77.8 12.4 244 30-280 59-313 (367)
45 PF00892 EamA: EamA-like trans 98.8 3.1E-08 6.8E-13 73.6 8.2 105 172-281 1-108 (126)
46 TIGR00817 tpt Tpt phosphate/ph 98.8 5.1E-08 1.1E-12 84.2 10.1 135 12-146 143-293 (302)
47 PRK13499 rhamnose-proton sympo 98.8 2.4E-06 5.1E-11 74.1 20.0 166 11-178 4-190 (345)
48 KOG1442 GDP-fucose transporter 98.7 5.4E-08 1.2E-12 79.6 6.8 235 41-280 58-308 (347)
49 PRK15430 putative chlorampheni 98.7 3.3E-07 7.2E-12 78.9 11.8 130 18-147 153-286 (296)
50 PTZ00343 triose or hexose phos 98.6 8.3E-07 1.8E-11 78.2 13.4 133 12-144 192-346 (350)
51 TIGR00776 RhaT RhaT L-rhamnose 98.6 3.5E-07 7.7E-12 78.4 10.4 130 12-146 150-288 (290)
52 COG0697 RhaT Permeases of the 98.6 1.5E-06 3.3E-11 74.1 13.4 132 12-146 152-287 (292)
53 PF03151 TPT: Triose-phosphate 98.6 2.2E-06 4.8E-11 66.2 13.0 119 163-281 1-135 (153)
54 PRK15051 4-amino-4-deoxy-L-ara 98.6 1.8E-07 3.8E-12 68.2 6.3 66 80-145 42-108 (111)
55 PF05653 Mg_trans_NIPA: Magnes 98.5 1.6E-06 3.6E-11 74.3 12.8 123 10-150 3-126 (300)
56 COG2510 Predicted membrane pro 98.5 1.9E-06 4.1E-11 62.6 9.9 115 163-281 4-121 (140)
57 TIGR00803 nst UDP-galactose tr 98.4 7.6E-06 1.6E-10 67.4 13.6 172 104-281 8-206 (222)
58 TIGR00688 rarD rarD protein. T 98.4 8.3E-06 1.8E-10 68.7 13.7 117 162-281 2-124 (256)
59 COG4975 GlcU Putative glucose 98.3 3.6E-08 7.7E-13 79.5 -2.2 254 14-280 2-262 (288)
60 PRK02971 4-amino-4-deoxy-L-ara 98.2 3.1E-05 6.8E-10 57.8 11.1 71 77-147 50-123 (129)
61 COG5006 rhtA Threonine/homoser 98.1 4.2E-05 9.1E-10 62.3 11.3 129 14-144 148-280 (292)
62 PF08449 UAA: UAA transporter 98.1 6.7E-05 1.4E-09 64.9 11.9 133 14-146 154-297 (303)
63 KOG2922 Uncharacterized conser 98.0 0.00011 2.5E-09 62.0 11.3 124 10-151 17-141 (335)
64 PF06027 DUF914: Eukaryotic pr 98.0 0.00026 5.6E-09 61.5 13.4 139 9-149 163-308 (334)
65 PF06800 Sugar_transport: Suga 97.8 0.00034 7.3E-09 58.6 11.3 128 10-142 134-267 (269)
66 PRK10452 multidrug efflux syst 97.6 0.00024 5.1E-09 52.2 6.8 68 81-148 36-105 (120)
67 PF10639 UPF0546: Uncharacteri 97.5 0.00053 1.1E-08 49.6 7.5 109 21-144 3-112 (113)
68 PRK09541 emrE multidrug efflux 97.5 0.0003 6.4E-09 51.0 6.3 66 81-146 36-103 (110)
69 PRK10650 multidrug efflux syst 97.5 0.0003 6.4E-09 50.7 6.0 58 87-144 48-106 (109)
70 PRK11431 multidrug efflux syst 97.5 0.00043 9.4E-09 49.6 6.5 59 88-146 43-102 (105)
71 COG2076 EmrE Membrane transpor 97.5 0.00029 6.2E-09 50.1 5.4 59 88-146 44-103 (106)
72 KOG4510 Permease of the drug/m 97.5 6.5E-05 1.4E-09 61.8 2.3 132 13-146 190-325 (346)
73 COG2962 RarD Predicted permeas 97.4 0.0022 4.8E-08 53.7 10.7 120 161-281 6-126 (293)
74 KOG1441 Glucose-6-phosphate/ph 97.4 0.00039 8.4E-09 59.8 5.8 136 11-146 160-307 (316)
75 PF04657 DUF606: Protein of un 97.3 0.0049 1.1E-07 46.7 11.0 126 16-143 3-138 (138)
76 TIGR00803 nst UDP-galactose tr 97.3 0.0031 6.7E-08 51.9 10.5 65 79-143 157-221 (222)
77 PF00893 Multi_Drug_Res: Small 97.0 0.002 4.3E-08 45.3 5.5 50 88-137 43-93 (93)
78 KOG1581 UDP-galactose transpor 96.9 0.0055 1.2E-07 51.6 8.2 137 10-146 168-313 (327)
79 KOG1580 UDP-galactose transpor 96.4 0.025 5.5E-07 46.0 8.6 132 17-148 175-315 (337)
80 KOG2765 Predicted membrane pro 96.3 0.055 1.2E-06 47.1 10.6 140 11-150 244-394 (416)
81 PF04142 Nuc_sug_transp: Nucle 96.3 0.08 1.7E-06 44.2 11.5 127 10-136 110-243 (244)
82 PRK15051 4-amino-4-deoxy-L-ara 96.0 0.18 4E-06 36.5 10.7 42 240-281 50-91 (111)
83 PRK02971 4-amino-4-deoxy-L-ara 96.0 0.16 3.4E-06 37.9 10.5 101 162-281 2-104 (129)
84 PF13536 EmrE: Multidrug resis 95.8 0.13 2.8E-06 37.4 9.2 42 235-281 47-88 (113)
85 PRK13499 rhamnose-proton sympo 95.5 0.3 6.5E-06 42.8 11.8 137 8-146 168-341 (345)
86 COG3238 Uncharacterized protei 95.3 0.38 8.2E-06 36.7 10.2 130 13-144 4-144 (150)
87 PF04657 DUF606: Protein of un 94.8 1.3 2.8E-05 33.4 13.3 53 163-215 2-55 (138)
88 KOG1442 GDP-fucose transporter 94.5 0.057 1.2E-06 45.0 4.3 131 12-142 183-323 (347)
89 KOG1444 Nucleotide-sugar trans 94.0 0.43 9.3E-06 40.8 8.6 132 15-146 158-300 (314)
90 PF06379 RhaT: L-rhamnose-prot 93.1 5.6 0.00012 34.7 17.4 168 11-182 4-193 (344)
91 KOG1443 Predicted integral mem 92.9 1.1 2.4E-05 38.2 9.2 133 12-144 162-313 (349)
92 COG3238 Uncharacterized protei 92.7 3.6 7.8E-05 31.4 11.1 114 161-275 4-118 (150)
93 PF07857 DUF1632: CEO family ( 92.1 6.1 0.00013 33.2 12.6 127 15-146 1-134 (254)
94 KOG1582 UDP-galactose transpor 91.4 0.7 1.5E-05 38.7 6.2 124 27-150 203-336 (367)
95 COG4975 GlcU Putative glucose 91.1 0.12 2.6E-06 42.5 1.6 77 68-144 203-283 (288)
96 KOG2234 Predicted UDP-galactos 90.5 6.9 0.00015 34.2 11.7 138 9-146 178-322 (345)
97 PF00893 Multi_Drug_Res: Small 90.4 4.4 9.5E-05 28.2 8.8 46 232-281 38-84 (93)
98 PF05653 Mg_trans_NIPA: Magnes 88.8 2.1 4.6E-05 37.0 7.5 101 159-281 4-104 (300)
99 KOG1583 UDP-N-acetylglucosamin 88.6 2.7 6E-05 35.4 7.6 134 9-146 159-314 (330)
100 COG1742 Uncharacterized conser 87.8 7.7 0.00017 27.4 8.3 37 111-147 69-105 (109)
101 COG5070 VRG4 Nucleotide-sugar 87.7 2.6 5.6E-05 34.4 6.7 98 44-141 185-291 (309)
102 PRK02237 hypothetical protein; 87.5 5.2 0.00011 28.6 7.4 49 98-146 56-105 (109)
103 KOG4831 Unnamed protein [Funct 85.8 11 0.00023 26.9 8.5 112 19-145 8-124 (125)
104 PRK10452 multidrug efflux syst 79.5 20 0.00043 26.4 8.0 18 264-281 68-85 (120)
105 KOG4314 Predicted carbohydrate 78.5 16 0.00036 29.3 7.7 81 71-151 201-281 (290)
106 PF02694 UPF0060: Uncharacteri 78.4 2.7 5.8E-05 29.9 3.0 52 95-146 51-103 (107)
107 PRK10650 multidrug efflux syst 77.9 23 0.00051 25.5 9.2 18 264-281 73-90 (109)
108 KOG3912 Predicted integral mem 73.6 26 0.00057 29.9 8.0 136 9-144 171-332 (372)
109 PF04342 DUF486: Protein of un 73.4 30 0.00066 24.6 8.6 53 93-145 54-107 (108)
110 PRK09541 emrE multidrug efflux 71.8 35 0.00075 24.6 8.2 18 264-281 68-85 (110)
111 PRK11431 multidrug efflux syst 67.7 42 0.00092 24.0 7.6 18 264-281 67-84 (105)
112 COG2076 EmrE Membrane transpor 62.7 54 0.0012 23.5 8.2 18 264-281 68-85 (106)
113 PF07168 Ureide_permease: Urei 60.0 2.9 6.4E-05 35.7 -0.0 108 21-130 3-128 (336)
114 PF10639 UPF0546: Uncharacteri 48.8 72 0.0016 23.1 5.7 24 169-192 3-26 (113)
115 PF13127 DUF3955: Protein of u 45.8 79 0.0017 20.2 5.2 39 10-48 2-41 (63)
116 PF07857 DUF1632: CEO family ( 43.3 66 0.0014 27.1 5.4 58 10-67 179-246 (254)
117 PF06570 DUF1129: Protein of u 42.5 1.8E+02 0.0039 23.4 11.7 33 69-101 141-173 (206)
118 PRK14225 camphor resistance pr 41.2 1.5E+02 0.0033 22.2 11.1 91 1-98 1-102 (137)
119 PHA00453 hypothetical protein 32.4 26 0.00057 19.7 1.0 12 1-12 1-12 (41)
120 PF13129 DUF3953: Protein of u 31.9 20 0.00043 20.9 0.5 23 4-26 14-36 (42)
121 PRK15071 lipopolysaccharide AB 30.9 1.8E+02 0.004 25.5 6.7 42 14-55 303-344 (356)
122 COG4657 RnfA Predicted NADH:ub 30.4 96 0.0021 24.1 4.0 58 116-181 87-151 (193)
123 PF05297 Herpes_LMP1: Herpesvi 25.9 23 0.00049 30.1 0.0 66 99-170 48-115 (381)
124 COG0534 NorM Na+-driven multid 24.6 5.5E+02 0.012 23.5 11.9 106 13-118 101-217 (455)
125 PF11023 DUF2614: Protein of u 24.6 72 0.0016 23.0 2.3 24 123-146 5-28 (114)
126 COG3086 RseC Positive regulato 23.7 60 0.0013 24.6 1.9 26 96-121 70-95 (150)
127 TIGR00751 menA 1,4-dihydroxy-2 23.5 2.4E+02 0.0053 24.1 5.8 61 71-132 105-168 (284)
128 PF07168 Ureide_permease: Urei 22.9 60 0.0013 28.1 1.9 30 10-39 215-244 (336)
129 PF11628 TCR_zetazeta: T-cell 22.8 79 0.0017 17.3 1.7 18 113-130 15-32 (33)
130 KOG2922 Uncharacterized conser 22.5 1.1E+02 0.0023 26.7 3.4 102 157-281 16-118 (335)
131 PRK00753 psbL photosystem II r 21.9 1.5E+02 0.0033 16.7 2.7 21 7-27 14-34 (39)
132 PRK11715 inner membrane protei 21.7 4.8E+02 0.011 24.0 7.6 78 68-146 325-404 (436)
133 PF09656 PGPGW: Putative trans 21.6 1.8E+02 0.004 17.9 3.4 43 130-185 5-47 (53)
134 COG3169 Uncharacterized protei 21.3 3.1E+02 0.0067 19.4 8.1 30 116-145 85-114 (116)
135 COG4858 Uncharacterized membra 20.7 4.5E+02 0.0097 21.1 9.7 56 71-129 158-219 (226)
136 CHL00038 psbL photosystem II p 20.5 1.8E+02 0.0038 16.4 2.9 21 7-27 13-33 (38)
137 PF11028 DUF2723: Protein of u 20.4 4.4E+02 0.0095 20.8 11.1 23 11-33 77-99 (178)
No 1
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=100.00 E-value=2.4e-33 Score=239.94 Aligned_cols=280 Identities=56% Similarity=0.891 Sum_probs=254.7
Q ss_pred chhhh-hhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhcc------CCcchhH
Q 023413 3 SFKEF-WTKKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQ------PLKAKWY 75 (282)
Q Consensus 3 ~~~~~-~~~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~------~~~~~~~ 75 (282)
+.|++ ++||.+++++++..+++|-+.++..++++.++|...|...++..|....+++.+...+|+. ..+++|+
T Consensus 1 ~~~~~~~~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w 80 (334)
T PF06027_consen 1 RFKSFLFTRRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWW 80 (334)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHH
Confidence 45775 8999999999999999999999999999999988889999999999999888887766642 3468899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCC-
Q 023413 76 YYLILGLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDR- 154 (282)
Q Consensus 76 ~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~- 154 (282)
++++.+++...+|++...|++|++.+.++++..+..+++++++++++|||.++.|++|+.+++.|+.++...|..++++
T Consensus 81 ~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~ 160 (334)
T PF06027_consen 81 KYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDS 160 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998876554333
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHH
Q 023413 155 GSGSSPRKGDALVIAGATLYAVSNVSEEFLVKKADRIELMAFLGLFGGIISAVQISILERKELQSIHWSAGAALPFFGYA 234 (282)
Q Consensus 155 ~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (282)
..+.++.+|+++++.++++||++++..|+..++.|+.+..+...+.+.++..+.....|..+++..+|+......+.+..
T Consensus 161 ~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~ 240 (334)
T PF06027_consen 161 SSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYA 240 (334)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHH
Confidence 24567789999999999999999999999999999999999999999999988888889888888889888777888888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccCC
Q 023413 235 LAMFLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCKM 282 (282)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~~ 282 (282)
++.+.+|.......+..++...++...+..+.+++++++++||+++|+
T Consensus 241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l 288 (334)
T PF06027_consen 241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL 288 (334)
T ss_pred HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH
Confidence 888899999999999999999999999999999999999999999873
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.97 E-value=1.3e-27 Score=205.07 Aligned_cols=262 Identities=16% Similarity=0.104 Sum_probs=196.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc--cCCcchhHHHHHHHHHHH
Q 023413 8 WTKKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR--QPLKAKWYYYLILGLIDV 85 (282)
Q Consensus 8 ~~~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~g~~~~ 85 (282)
+.||..--+.......++|+.++...|...+ +.+|...+++|+..+.++++++...++ ++++++++.....|.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 79 (292)
T PRK11272 2 RFRQLLPLFGALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLL 79 (292)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 4455555556677888999999999998774 678999999999999999888876554 234566777778888765
Q ss_pred HH-HHHHHHHh-hccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchh
Q 023413 86 EG-NFLVVKAY-QYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKG 163 (282)
Q Consensus 86 ~~-~~~~~~al-~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G 163 (282)
.. +.+++.+. ++++++.++++.++.|+++.+++.+ +|||+++++++|+.+++.|+.++..++.. + ....|
T Consensus 80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~------~-~~~~G 151 (292)
T PRK11272 80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL------S-GNPWG 151 (292)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc------c-cchHH
Confidence 55 67777888 9999999999999999999999985 79999999999999999999988643211 1 23479
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHH
Q 023413 164 DALVIAGATLYAVSNVSEEFLVKKADRIELMAFLGLFGGIISAVQISILERKELQSIHWSAGAALPFFGYALAMFLFYSF 243 (282)
Q Consensus 164 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (282)
++++++++++||.|++..||..++ ++...+.+++..+...+.+.....+.......+.+.+....+.+...+. ..+..
T Consensus 152 ~l~~l~a~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~-~~~~l 229 (292)
T PRK11272 152 AILILIASASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSI-IAISA 229 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHH-HHHHH
Confidence 999999999999999999986543 4455667788888777766543332221111122333333444432222 22244
Q ss_pred HHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 244 VPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 244 ~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
+.+..++.++...+...++||+++++++++++||++++
T Consensus 230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~ 267 (292)
T PRK11272 230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSP 267 (292)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 55567888889999999999999999999999999985
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.96 E-value=1.2e-26 Score=199.44 Aligned_cols=258 Identities=13% Similarity=0.064 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHH-HHHHH
Q 023413 14 LGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQPLKAKWYYYLILGLIDVEG-NFLVV 92 (282)
Q Consensus 14 ~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~ 92 (282)
+++.++....++|+.+....|... ++.+|....++|+..+.+++.++.. + ++.++++++....+.++... +.+++
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~--~~~~P~~~~~~R~~~a~l~l~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVS--ESLGPVGGAAMIYSVSGLLLLLTVG-F-PRLRQFPKRYLLAGGLLFVSYEICLA 79 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH--ccCChHHHHHHHHHHHHHHHHHHcc-c-cccccccHHHHHHHhHHHHHHHHHHH
Confidence 445678889999999999999866 4688999999999999988887642 2 22233334445556555555 55566
Q ss_pred HHhh----ccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCC---CCCCCcchhHH
Q 023413 93 KAYQ----YTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDR---GSGSSPRKGDA 165 (282)
Q Consensus 93 ~al~----~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~---~~~~~~~~G~~ 165 (282)
.+++ +.++++++++.++.|+++.+++++++|||++++++.|+.+++.|++++..++...+.. ....+...|+.
T Consensus 80 ~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~ 159 (295)
T PRK11689 80 LSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYG 159 (295)
T ss_pred HHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHH
Confidence 6665 4678889999999999999999999999999999999999999999998754311100 01112346999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHH
Q 023413 166 LVIAGATLYAVSNVSEEFLVKKADRIELMAFLGLFGGIISAVQISILERKELQSIHWSAGAALPFFGYALAMFLFYSFVP 245 (282)
Q Consensus 166 ~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (282)
+++++++|||.|++..||..++.|+..... ..+...+.+.. ..++.+..+.+++.+..+.+.+. +....|..+.
T Consensus 160 ~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~~--~t~~~~~l~~ 233 (295)
T PRK11689 160 LAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKY-FLSPQPAMVFSLPAIIKLLLAAA--AMGFGYAAWN 233 (295)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHH-HHhcCccccCCHHHHHHHHHHHH--HHHHHHHHHH
Confidence 999999999999999999887777765432 22223332322 22222112223333333334332 2333446667
Q ss_pred HHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 246 ILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 246 ~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
+..++.++...+...+++|+++++++++++||++++
T Consensus 234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~ 269 (295)
T PRK11689 234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSF 269 (295)
T ss_pred HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence 788888999999999999999999999999999985
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.96 E-value=2.5e-26 Score=200.73 Aligned_cols=270 Identities=14% Similarity=0.142 Sum_probs=202.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc---cC---CcchhHHHHHHH
Q 023413 8 WTKKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR---QP---LKAKWYYYLILG 81 (282)
Q Consensus 8 ~~~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~---~~---~~~~~~~~~~~g 81 (282)
+|| ..+.+..++..-++.+....++|...+.| .+|....++|+.++++++.++.+.++ ++ .++++..+.+.|
T Consensus 8 ~~~-~~~~~~~~~~~q~~~~~~~~~~k~a~~~G-~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g 85 (358)
T PLN00411 8 WRR-EAVFLTAMLATETSVVGISTLFKVATSKG-LNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLG 85 (358)
T ss_pred hhh-ccchHHHHHHHHHHHHHHHHHHHHHHHCC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHH
Confidence 455 44777888889999999999999999755 56789999999999999998876432 11 234556677788
Q ss_pred HHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHH------hhcccchhhhhhHHHhhhcceeeEeecCCCC---
Q 023413 82 LIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIF------LKTKYRYKKITGVVVCVAGLVTVIFSDVHAG--- 152 (282)
Q Consensus 82 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~------l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~--- 152 (282)
.++...+.+++.|++|+++++++++.++.|+++.++++++ +|||+++++++|+++++.|+.++..+++...
T Consensus 86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~ 165 (358)
T PLN00411 86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVA 165 (358)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 8874336678899999999999999999999999999999 6999999999999999999998875332110
Q ss_pred --------------CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccChh-HHHHHHHHHHHHHHHHHHHHHhhccc
Q 023413 153 --------------DRGSGSSPRKGDALVIAGATLYAVSNVSEEFLVKKADRI-ELMAFLGLFGGIISAVQISILERKEL 217 (282)
Q Consensus 153 --------------~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (282)
+.....+...|+.++++++++||+|++++||..+++++. ..++++..++.....+.....+..+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~ 245 (358)
T PLN00411 166 SSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNP 245 (358)
T ss_pred cccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 000111124599999999999999999999988887654 56667777777766555555443221
Q ss_pred cc--cccccch-hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 218 QS--IHWSAGA-ALPFFGYALAMFLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 218 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
.. ..++... .+++.+.. +. ..|..+.+..++.++...+...+++|+++++++++++||++++
T Consensus 246 ~~~~~~~~~~~~~i~y~~i~-t~-lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~ 310 (358)
T PLN00411 246 SVWIIHFDITLITIVTMAII-TS-VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYL 310 (358)
T ss_pred ccceeccchHHHHHHHHHHH-HH-HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcH
Confidence 11 1122221 13333332 32 3446778888999999999999999999999999999999986
No 5
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.96 E-value=1.4e-26 Score=195.79 Aligned_cols=243 Identities=18% Similarity=0.152 Sum_probs=186.8
Q ss_pred HHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHH-HHHHHHHhhccchhhHh
Q 023413 26 ITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQPLKAKWYYYLILGLIDVEG-NFLVVKAYQYTSLTSVM 104 (282)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~al~~~~~~~~~ 104 (282)
|+.++...|...+ +..|+....+.|...+.+.+.+...++ +++++++++...|.++... +.+++.|++++++++++
T Consensus 1 Wg~~~~~~k~~~~-~~~~~~~~~~~r~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ 77 (260)
T TIGR00950 1 WGTTGVVIGQYLE-GQVPLYFAVFRRLIFALLLLLPLLRRR--PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAA 77 (260)
T ss_pred CcchHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhc--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 6778888888665 467888999999999888887765544 4566777888888887777 77888999999999999
Q ss_pred hhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 023413 105 LLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDALVIAGATLYAVSNVSEEFL 184 (282)
Q Consensus 105 ~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~ 184 (282)
++.++.|+++.+++.+++|||+++++++|+.+++.|+.++..++.. ..+..|+.+++.++++|+.+++..|+.
T Consensus 78 ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~-------~~~~~G~~~~l~a~~~~a~~~~~~k~~ 150 (260)
T TIGR00950 78 LLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL-------SINPAGLLLGLGSGISFALGTVLYKRL 150 (260)
T ss_pred HHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc-------cccHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999998753311 233689999999999999999999998
Q ss_pred hcccCh--hHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHH
Q 023413 185 VKKADR--IELMAFLGLFGGIISAVQISILERKELQSIHWSAGAALPFFGYALAMFLFYSFVPILLKTNGATMLNLSLLT 262 (282)
Q Consensus 185 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 262 (282)
.++.|+ .....+.+..+.+...+.....+.. ...+...+....+.+... ....+..+.+..++.++...+...++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~s~~~~~ 227 (260)
T TIGR00950 151 VKKEGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIG-TALAYFLWNKGLTLVDPSAASILALA 227 (260)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 877774 4555567777777776664333222 122222332233333222 22223445566788889899999999
Q ss_pred HHHHHHHHHHHHhcccccC
Q 023413 263 SDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 263 ~pi~a~l~~~~~~~E~~s~ 281 (282)
+|+++.+++++++||+++.
T Consensus 228 ~pv~~~ll~~~~~~E~~~~ 246 (260)
T TIGR00950 228 EPLVALLLGLLILGETLSL 246 (260)
T ss_pred HHHHHHHHHHHHhCCCCCH
Confidence 9999999999999999985
No 6
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.95 E-value=2.9e-26 Score=197.09 Aligned_cols=253 Identities=13% Similarity=0.050 Sum_probs=180.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhccC-----CcchhH--HHHHH
Q 023413 8 WTKKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQP-----LKAKWY--YYLIL 80 (282)
Q Consensus 8 ~~~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~-----~~~~~~--~~~~~ 80 (282)
|.+++.+|.++.++++++|+..+.+.|... +.+|....++|+.++.+++.+....+++. ..++++ .....
T Consensus 2 ~~~~~~~g~~~~l~a~~~wg~~~~~~k~~~---~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (296)
T PRK15430 2 DAKQTRQGVLLALAAYFIWGIAPAYFKLIY---YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAV 78 (296)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHH
Confidence 455677899999999999999999998753 47899999999999998777766543211 011222 22345
Q ss_pred HHHHHHH-HHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCC
Q 023413 81 GLIDVEG-NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSS 159 (282)
Q Consensus 81 g~~~~~~-~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~ 159 (282)
+.+.... +.++++|++++++++++++.++.|+++.+++++++|||+++++|.|+++++.|+.++..++++ .
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~--------~ 150 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGS--------L 150 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCC--------c
Confidence 5555555 778889999999999999999999999999999999999999999999999999998743211 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcccC--hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccc---chhHHHHHHH
Q 023413 160 PRKGDALVIAGATLYAVSNVSEEFLVKKAD--RIELMAFLGLFGGIISAVQISILERKELQSIHWSA---GAALPFFGYA 234 (282)
Q Consensus 160 ~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 234 (282)
..++++++++||.|.+..||..++.. ....+.++...+.....+. .+.. ....+.+. +......+.
T Consensus 151 ----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~g~- 221 (296)
T PRK15430 151 ----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSS-TSHMGQNPMSLNLLLIAAGI- 221 (296)
T ss_pred ----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCC-cccccCCcHHHHHHHHHHHH-
Confidence 14688899999999999998643222 2333344444443332111 1111 11111111 112222222
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 235 LAMFLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
.+. ..+..+.+..++.++...+...+.+|+++++++++++||++++
T Consensus 222 ~t~-i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~ 267 (296)
T PRK15430 222 VTT-VPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGA 267 (296)
T ss_pred HHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 222 3346667788999999999999999999999999999999986
No 7
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.95 E-value=1.5e-25 Score=192.96 Aligned_cols=253 Identities=15% Similarity=0.095 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHH-HHHHHHHh
Q 023413 17 GLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQPLKAKWYYYLILGLIDVEG-NFLVVKAY 95 (282)
Q Consensus 17 ~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~al 95 (282)
++.+..+++|+.++..+|... ++.+|....++|+.++.+.+.++..++ +++++.....|.+.... ..+++.++
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~--~~~~p~~~~~~R~~~a~~~l~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGL--HNMPPLMLAGLRFMLVAFPAIFFVARP----KVPLNLLLGYGLTISFGQFAFLFCAI 80 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999876 468899999999999887666554322 22344455556655555 44566888
Q ss_pred hc-cchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHHHHHHHHHHH
Q 023413 96 QY-TSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDALVIAGATLY 174 (282)
Q Consensus 96 ~~-~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~ 174 (282)
++ .+++.++++.++.|+++.+++++++|||++++++++++++++|+.++..++.++ ...+..|+.+++.++++|
T Consensus 81 ~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~-----~~~~~~G~~l~l~aal~~ 155 (299)
T PRK11453 81 NFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG-----QHVAMLGFMLTLAAAFSW 155 (299)
T ss_pred HhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC-----cchhHHHHHHHHHHHHHH
Confidence 88 688999999999999999999999999999999999999999999988532221 122357999999999999
Q ss_pred HHHHHHHHHhhcccChh---HHHHHHHHHHHHHHHHHHHHHhhcc-----ccccccccchhHHHHHHHHHHHHHHHHHHH
Q 023413 175 AVSNVSEEFLVKKADRI---ELMAFLGLFGGIISAVQISILERKE-----LQSIHWSAGAALPFFGYALAMFLFYSFVPI 246 (282)
Q Consensus 175 a~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (282)
+.|++.+||..++.++. ....+....+.+.........++.+ ..+.+++.+..+.+.+...+... |..+.+
T Consensus 156 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~-~~l~~~ 234 (299)
T PRK11453 156 ACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVG-YGIWGT 234 (299)
T ss_pred HHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 99999999976654432 3344444444433333322333221 11223333444455553333222 244455
Q ss_pred HHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 247 LLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 247 ~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
..++.++...+...++||+++.+++++++||++++
T Consensus 235 ~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~ 269 (299)
T PRK11453 235 LLGRYETWRVAPLSLLVPVVGLASAALLLDERLTG 269 (299)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 66777777777788889999999999999999985
No 8
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.95 E-value=6.4e-29 Score=197.95 Aligned_cols=277 Identities=67% Similarity=1.131 Sum_probs=251.5
Q ss_pred Cchhhhh-hHHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHH
Q 023413 2 VSFKEFW-TKKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQPLKAKWYYYLIL 80 (282)
Q Consensus 2 ~~~~~~~-~~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 80 (282)
.|++|+| ++|.++|+.++...++|.+..++.++++++++...|...+|..+...+++..+...+|++..+..|+.+++.
T Consensus 5 ~~~~eik~tkk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYill 84 (336)
T KOG2766|consen 5 FNFNEIKSTKKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILL 84 (336)
T ss_pred hhHHHhhhchhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhhe
Confidence 4789999 888899999999999999999999999999988999999999999999999999998876667888889999
Q ss_pred HHHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCc
Q 023413 81 GLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSP 160 (282)
Q Consensus 81 g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~ 160 (282)
++...-+|++...|.||++...++++-.-..+.+.+++|+++|.|.++.++.|+++++.|+.+++..|...++...+.++
T Consensus 85 a~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp 164 (336)
T KOG2766|consen 85 AFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNP 164 (336)
T ss_pred eEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877666678888
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHH
Q 023413 161 RKGDALVIAGATLYAVSNVSEEFLVKKADRIELMAFLGLFGGIISAVQISILERKELQSIHWSAGAALPFFGYALAMFLF 240 (282)
Q Consensus 161 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (282)
.+|+.+.+++|-+||+.++..+...|+.|..+.+....++|+++..+. .+++..+.....|++.. ..++...++++++
T Consensus 165 ~~GD~lvi~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i-~~yl~f~L~MFll 242 (336)
T KOG2766|consen 165 VKGDFLVIAGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAI-FLYLRFALTMFLL 242 (336)
T ss_pred ccCcEEEEecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHH-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887 67887777777787443 4446688889999
Q ss_pred HHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccCC
Q 023413 241 YSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCKM 282 (282)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~~ 282 (282)
|.....+.+..+++..|+..+++-+.+.+. ..||.+++|+
T Consensus 243 Ysl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wL 282 (336)
T KOG2766|consen 243 YSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWL 282 (336)
T ss_pred HHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhh
Confidence 999999999999999999988888888887 4567777764
No 9
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.95 E-value=2.2e-25 Score=191.34 Aligned_cols=256 Identities=15% Similarity=0.049 Sum_probs=189.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc-cCCcchhHHHHHHHHHHHHH
Q 023413 9 TKKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR-QPLKAKWYYYLILGLIDVEG 87 (282)
Q Consensus 9 ~~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~g~~~~~~ 87 (282)
+.++.+|+.+..+..++|+..+.+.|+... +.+|....++|+.++.+++.++...++ +.++++++..+..|++....
T Consensus 7 ~~~~~~~~~~~~la~~~~~~~~~~~K~~~~--~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 84 (293)
T PRK10532 7 KLPVWLPILLLLIAMASIQSGASLAKSLFP--LVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGM 84 (293)
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHH
Confidence 334578889999999999999999999885 478999999999999998887765433 34466777778888876555
Q ss_pred HHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHHHH
Q 023413 88 NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDALV 167 (282)
Q Consensus 88 ~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~ 167 (282)
+.++++|++|++++.++++.++.|+++.+++ +||+++. .++.+++.|+.++..++.+. +.....|++++
T Consensus 85 ~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~-----~~~~~~G~ll~ 153 (293)
T PRK10532 85 NYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDV-----SHVDLTGAALA 153 (293)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCc-----ccCChHHHHHH
Confidence 8888899999999999999999999998876 3665544 45677899999887533221 11235799999
Q ss_pred HHHHHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 023413 168 IAGATLYAVSNVSEEFLVKKADRIELMAFLGLFGGIISAVQISILERKELQSIHWSAGAALPFFGYALAMFLFYSFVPIL 247 (282)
Q Consensus 168 l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (282)
++++++||.|.+..||..++.++... .+....+.+++.+.....+. ....+++.+....+.+...+ ...|..+.+.
T Consensus 154 l~aa~~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t-~~~~~l~~~~ 229 (293)
T PRK10532 154 LGAGACWAIYILSGQRAGAEHGPATV-AIGSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILST-ALPYSLEMIA 229 (293)
T ss_pred HHHHHHHHHHHHHHHHHhccCCchHH-HHHHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 99999999999999998877777665 45556666665555433221 11122222222334443333 2223455667
Q ss_pred HHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 248 LKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 248 ~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
.++.++...+...++||+++.+++++++||++++
T Consensus 230 ~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~ 263 (293)
T PRK10532 230 LTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTL 263 (293)
T ss_pred HHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence 8888889999999999999999999999999985
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.94 E-value=4.9e-25 Score=190.22 Aligned_cols=243 Identities=9% Similarity=0.075 Sum_probs=186.0
Q ss_pred hhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHH--hhc--cCCcchhHHHHHHHHHHHHHHHHHHHHhhccchhhHhh
Q 023413 30 GFSSSELARKGINAPTSQSFFNYVLLAIVYGSLML--YRR--QPLKAKWYYYLILGLIDVEGNFLVVKAYQYTSLTSVML 105 (282)
Q Consensus 30 ~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~--~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~ 105 (282)
++.-|+..+ +..+|...++.|+..+.+...+... .++ +.++++++.....|+++.....+.+.|++|++++.+++
T Consensus 18 ~~~NK~~l~-~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~l 96 (302)
T TIGR00817 18 NIYNKKLLN-VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHT 96 (302)
T ss_pred HHHHHHHHh-hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 344444443 4578999999999998877665521 111 34567888889999997555778889999999999999
Q ss_pred hccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 023413 106 LDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDALVIAGATLYAVSNVSEEFLV 185 (282)
Q Consensus 106 l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~ 185 (282)
+.++.|+++.+++++++|||++++++.++.+++.|+.+....+ .+....|++++++++++|++|++..||..
T Consensus 97 i~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~--------~~~~~~G~~~~l~a~~~~a~~~v~~k~~~ 168 (302)
T TIGR00817 97 IKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE--------LSFNWAGFLSAMISNITFVSRNIFSKKAM 168 (302)
T ss_pred HHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc--------ccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998754211 11235799999999999999999999988
Q ss_pred c--ccChhHHHHHHHHHHHHHHHHHHHHHhhccccccccc-----cch-hH---HHHHHHHHHHHHHHHHHHHHHHhhHH
Q 023413 186 K--KADRIELMAFLGLFGGIISAVQISILERKELQSIHWS-----AGA-AL---PFFGYALAMFLFYSFVPILLKTNGAT 254 (282)
Q Consensus 186 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~a~ 254 (282)
+ +.|+.+.+.++...+.+.+.|.....++.+....++. ... .. .......++..++.......++.++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~ 248 (302)
T TIGR00817 169 TIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPL 248 (302)
T ss_pred ccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence 8 7899999999999999888887655543221111110 111 11 11112224445555666788999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 255 MLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 255 ~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
..++..+++|++++++|++++||++|+
T Consensus 249 t~sv~~~l~pv~~~~~~~~~lge~lt~ 275 (302)
T TIGR00817 249 THSVGNCMKRVVVIVVSILFFGTKISP 275 (302)
T ss_pred HHHHHhhhhhhheeeeehhhcCCCCch
Confidence 999999999999999999999999986
No 11
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.93 E-value=1.5e-23 Score=176.74 Aligned_cols=242 Identities=14% Similarity=-0.013 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhcc----------CCcch-hHHHHHHHH
Q 023413 14 LGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQ----------PLKAK-WYYYLILGL 82 (282)
Q Consensus 14 ~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~----------~~~~~-~~~~~~~g~ 82 (282)
+|+.+...++++|+..+.+.|.+. +.+|.+++++|+.++.+++.++...+++ ..+++ +......|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~~---~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLLK---PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 588899999999999999999843 4789999999999999887776533211 11222 223455666
Q ss_pred HHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcch
Q 023413 83 IDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRK 162 (282)
Q Consensus 83 ~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~ 162 (282)
+....+.++++|++++++++++++.++.|+++++++++++|||+++++|+++.+++.|+.++..++ . + .
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~-~------~-~--- 147 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK-G------S-L--- 147 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc-C------C-c---
Confidence 655447788899999999999999999999999999999999999999999999999999876421 1 1 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHHHHhhcccccccc-ccchhHHHHHHHHHHHHHH
Q 023413 163 GDALVIAGATLYAVSNVSEEFLVKKADRIELMAFLGLFGGIISAVQISILERKELQSIHW-SAGAALPFFGYALAMFLFY 241 (282)
Q Consensus 163 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 241 (282)
...++++++|||.|.+..||..++ +..+.... .........+.....+..+....+. ..|....+.+. .+ ...|
T Consensus 148 -~~~~l~aa~~~a~~~i~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~t-~i~~ 222 (256)
T TIGR00688 148 -PWEALVLAFSFTAYGLIRKALKNT-DLAGFCLE-TLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGL-IT-GTPL 222 (256)
T ss_pred -hHHHHHHHHHHHHHHHHHhhcCCC-CcchHHHH-HHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHH-HH-HHHH
Confidence 135789999999999999986543 33322221 1111112111111111111111112 13334444443 23 2344
Q ss_pred HHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHH
Q 023413 242 SFVPILLKTNGATMLNLSLLTSDMWAVLIRIGA 274 (282)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~ 274 (282)
..+.+..++.++...+...++||+++.+++.+.
T Consensus 223 ~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 223 LAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 667778899999999999999999999999764
No 12
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.92 E-value=6.7e-23 Score=179.73 Aligned_cols=259 Identities=12% Similarity=0.037 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhhcCCCc-hHHHHHHHHHHHHHHHHHHHHh--hccC----CcchhHHHHHHHHHHH
Q 023413 13 LLGLGLGQFLSLLITSTGFSSSELARKGINA-PTSQSFFNYVLLAIVYGSLMLY--RRQP----LKAKWYYYLILGLIDV 85 (282)
Q Consensus 13 ~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~-p~~~~~~r~~~~~l~l~~~~~~--~~~~----~~~~~~~~~~~g~~~~ 85 (282)
++-..+....-.+........|.+.+ ..+ |..++.+|+.++.++...+... ++++ .+++++..+..|+++.
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~--~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~ 125 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALN--MLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHL 125 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34444443333444444555555553 356 9999999999998766554322 2111 1346778889999998
Q ss_pred HHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHH
Q 023413 86 EGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDA 165 (282)
Q Consensus 86 ~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~ 165 (282)
..+...+.|+++++++.++++.++.|+++++++++++|||++++++.++++++.|+.+....+. + ....|++
T Consensus 126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~-------~-~~~~G~~ 197 (350)
T PTZ00343 126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL-------H-FTWLAFW 197 (350)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc-------h-hHHHHHH
Confidence 8877788999999999999999999999999999999999999999999999999999875221 1 2367999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc-------ChhHHHHHHHHHHHHHHHHHHHHHhhccccc------cccccc--hhH--
Q 023413 166 LVIAGATLYAVSNVSEEFLVKKA-------DRIELMAFLGLFGGIISAVQISILERKELQS------IHWSAG--AAL-- 228 (282)
Q Consensus 166 ~~l~a~~~~a~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~-- 228 (282)
+++++++++|++++..|+..++. ++.+...+....+.+.++|.....|...... .+++.+ ...
T Consensus 198 ~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~ 277 (350)
T PTZ00343 198 CAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF 277 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH
Confidence 99999999999999999987653 3555666668888888887765555321110 011111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 229 PFFGYALAMFLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
.....++.+++++.......++.++...++...++|+++++.|++++||++|+
T Consensus 278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~ 330 (350)
T PTZ00343 278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTL 330 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCch
Confidence 12224666677776666788899999999999999999999999999999986
No 13
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.91 E-value=4.6e-23 Score=176.07 Aligned_cols=253 Identities=15% Similarity=0.085 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhh--c---cCCcchhHHHHHHHHH-HHHHHH
Q 023413 16 LGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYR--R---QPLKAKWYYYLILGLI-DVEGNF 89 (282)
Q Consensus 16 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~--~---~~~~~~~~~~~~~g~~-~~~~~~ 89 (282)
+.+.+.++++|+..+...|...++ .++ ..+++.....+.+.++..++ + ++.+++++.....+.+ ....+.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~--~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK--EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc--hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 467789999999999999977653 233 34777777777777776553 1 2223444444444444 444488
Q ss_pred HHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHHHHHH
Q 023413 90 LVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDALVIA 169 (282)
Q Consensus 90 ~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~l~ 169 (282)
++++|+++.++++++++.++.|+++.+++++++|||+++++|+|+.+++.|+.++..++.. ..+..|+.++++
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~-------~~~~~g~~~~l~ 151 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA-------QHRRKAYAWALA 151 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc-------ccchhHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999988753321 122468889999
Q ss_pred HHHHHHHHHHHHHHhhcccChhH----HHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHH
Q 023413 170 GATLYAVSNVSEEFLVKKADRIE----LMAFLGLFGGIISAVQISILERKELQSIHWSAGAALPFFGYALAMFLFYSFVP 245 (282)
Q Consensus 170 a~~~~a~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (282)
++++|+.|++..|+..++.++.. ...+..........+.....+..+....+.+. ....+.+...+ ...|..+.
T Consensus 152 aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s-~l~~~l~~ 229 (281)
T TIGR03340 152 AALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQI-LPSATLGGLMI-GGAYALVL 229 (281)
T ss_pred HHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHH-HHHHHHHHHHH-HHHHHHHH
Confidence 99999999999997655444332 22222222212111211111211111111111 12222332222 22234445
Q ss_pred HHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 246 ILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 246 ~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
+..++.++...+...+++|+++.+++++++||++++
T Consensus 230 ~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~ 265 (281)
T TIGR03340 230 WAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYL 265 (281)
T ss_pred HHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccH
Confidence 566777777777778888999999999999999985
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.88 E-value=1e-19 Score=155.77 Aligned_cols=260 Identities=20% Similarity=0.219 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc---cCCcchhHHHHHHHHHHHHH
Q 023413 11 KTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR---QPLKAKWYYYLILGLIDVEG 87 (282)
Q Consensus 11 ~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~---~~~~~~~~~~~~~g~~~~~~ 87 (282)
+...+.....+.++.|+......+...+. ..++....+.|...+.....+...+++ ++..+++++....+.+....
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (292)
T COG0697 4 ALLLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLAL 82 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHH
Confidence 34466677778889999999988888763 355666667799999887444444332 22233344566666666666
Q ss_pred -HHHHHHHhhccchhhHhhhccchhHHHHHHHH-HHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHH
Q 023413 88 -NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTW-IFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDA 165 (282)
Q Consensus 88 -~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~-l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~ 165 (282)
..+++.++++++++.++++.++.|+++.++++ +++|||++++++.++.+++.|+.++..++..+. .. +..|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~----~~-~~~g~~ 157 (292)
T COG0697 83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG----IL-SLLGLL 157 (292)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch----hH-HHHHHH
Confidence 77888999999999999999999999999997 667999999999999999999999998655421 00 468999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhHHHH-HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHH
Q 023413 166 LVIAGATLYAVSNVSEEFLVKKADRIELMA-FLGLFGGIISAVQISILERKELQSIHWSAGAALPFFGYALAMFLFYSFV 244 (282)
Q Consensus 166 ~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (282)
+++.++++++++.+..|+.. +.++..... ++.. +....... ......+ .+.++..+....+.+...+. ..+..+
T Consensus 158 ~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~g~~~~~-i~~~~~ 232 (292)
T COG0697 158 LALAAALLWALYTALVKRLS-RLGPVTLALLLQLL-LALLLLLL-FFLSGFG-APILSRAWLLLLYLGVFSTG-LAYLLW 232 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHH-HHHHHHHH-HHhcccc-ccCCHHHHHHHHHHHHHHHH-HHHHHH
Confidence 99999999999999999877 666666555 4444 22221111 1111111 12233333333334432221 223444
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 245 PILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
.+..+..++...+...+++|+++++++++++||+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~ 269 (292)
T COG0697 233 YYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSP 269 (292)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 5567777777777777888999999999999999975
No 15
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.86 E-value=9.2e-22 Score=158.22 Aligned_cols=269 Identities=17% Similarity=0.213 Sum_probs=200.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhcc---CCcchhHHHHHHHH
Q 023413 6 EFWTKKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQ---PLKAKWYYYLILGL 82 (282)
Q Consensus 6 ~~~~~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~---~~~~~~~~~~~~g~ 82 (282)
+..++++-+|+.+.-++ ..+..+.+.++... +.+|....-.|++.-.++..|...++++ .++.+.++++++|+
T Consensus 30 ri~~d~p~~gl~l~~vs-~ff~~~~vv~t~~~---e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~ 105 (346)
T KOG4510|consen 30 RISKDKPNLGLLLLTVS-YFFNSCMVVSTKVL---ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGF 105 (346)
T ss_pred HhhcCCCccCceehhhH-HHHhhHHHhhhhhh---ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehh
Confidence 34445666788777777 55666666665555 3568888888987777777776655541 12233344789999
Q ss_pred HHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCC-----CC
Q 023413 83 IDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRG-----SG 157 (282)
Q Consensus 83 ~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~-----~~ 157 (282)
.+..+.+..|+|++|++.++++++.+++|.++.+++|.++|||.++...++..+.+.|+++++.|..-.+++. .+
T Consensus 106 mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~ 185 (346)
T KOG4510|consen 106 MGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQ 185 (346)
T ss_pred hhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998653322221 11
Q ss_pred -CCcchhHHHHHHHHHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHH
Q 023413 158 -SSPRKGDALVIAGATLYAVSNVSEEFLVKKADRIELMAFLGLFGGIISAVQISILERKELQSIHWSAGAALPFFGYALA 236 (282)
Q Consensus 158 -~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (282)
..+.+|...++.++..-|.-.++.|+.-|+.|......|..+.+.+...+..........+ ..+.+++....+| ..
T Consensus 186 ~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP-~cgkdr~l~~~lG--vf 262 (346)
T KOG4510|consen 186 VEYDIPGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLP-HCGKDRWLFVNLG--VF 262 (346)
T ss_pred ccccCCchHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecC-ccccceEEEEEeh--hh
Confidence 3346799999999999998899999888999988777777788877776554333222222 3444444433333 23
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 237 MFLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 237 ~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
.+..+......++...+.-.+++.+++.+++.+|...+|||.||+
T Consensus 263 gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ 307 (346)
T KOG4510|consen 263 GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTI 307 (346)
T ss_pred hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChH
Confidence 344445556677888888888999999999999999999999986
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.82 E-value=9.3e-18 Score=143.63 Aligned_cols=250 Identities=15% Similarity=0.106 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHH----HHHHHHHHHHHHH
Q 023413 15 GLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQPLKAKWYYY----LILGLIDVEGNFL 90 (282)
Q Consensus 15 g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~ 90 (282)
+++++++.+++|+..+...|+.. + .++.+.. |..++.+++..+....+++. ++.+.. +..|..-..++.+
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g-~~~~~~~--~~~~g~l~~~~~~~~~~~~~-~~~~~~~~~g~l~G~~w~ig~~~ 75 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--G-GPYSQTL--GTTFGALILSIAIAIFVLPE-FWALSIFLVGLLSGAFWALGQIN 75 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--C-CHHHHHH--HHHHHHHHHHHHHHHHhCCc-ccccHHHHHHHHHHHHHHhhhhh
Confidence 57889999999999999999876 3 4444443 77777776665543332211 222223 3333333334789
Q ss_pred HHHHhhccchhhHhhhcc-chhHHHHHHHHHHhhcccchhh----hhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHH
Q 023413 91 VVKAYQYTSLTSVMLLDC-WTIPCVMFLTWIFLKTKYRYKK----ITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDA 165 (282)
Q Consensus 91 ~~~al~~~~~~~~~~l~~-~~p~~~~il~~l~l~ek~~~~~----~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~ 165 (282)
++.|+++.+++.+..+.+ +.|++..+.+.+++|||.++++ ++|+++++.|++++...++++.++....+..+|+.
T Consensus 76 ~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~ 155 (290)
T TIGR00776 76 QFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGIL 155 (290)
T ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHH
Confidence 999999999999999999 7888899999999999999999 99999999999999775433211110023368999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhHHH---HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHH--HHHHHHHH
Q 023413 166 LVIAGATLYAVSNVSEEFLVKKADRIELM---AFLGLFGGIISAVQISILERKELQSIHWSAGAALPFFG--YALAMFLF 240 (282)
Q Consensus 166 ~~l~a~~~~a~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 240 (282)
+++.++++|+.|.+..|+. +.||.+.. .+....+..+..+.. .+.+ +...+........| .+.++.+|
T Consensus 156 ~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~Gi~~~ia~~~y 228 (290)
T TIGR00776 156 LLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGH--ILAK---PLKKYAILLNILPGLMWGIGNFFY 228 (290)
T ss_pred HHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHH--hccc---chHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999975 47787773 433344444332221 1111 11111111112233 23333333
Q ss_pred HHHHHHHHH-HhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 241 YSFVPILLK-TNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 241 ~~~~~~~~~-~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
....+ +.++...+.....||+.+.+++++++||+.+.
T Consensus 229 ----~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~ 266 (290)
T TIGR00776 229 ----LFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTK 266 (290)
T ss_pred ----HHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 33344 66777777777788999999999999999875
No 17
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.82 E-value=9.8e-18 Score=137.63 Aligned_cols=250 Identities=16% Similarity=0.084 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHh-hc-------cCCcchhHHHHHHH
Q 023413 10 KKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLY-RR-------QPLKAKWYYYLILG 81 (282)
Q Consensus 10 ~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~-~~-------~~~~~~~~~~~~~g 81 (282)
++..+|+++++.+.++|+....+.|.+. ..++.++...|...+..+....+.. |+ .++++.+.. ...+
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~-~~l~ 78 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLM-LALT 78 (293)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHH-HHHH
Confidence 4456899999999999999999999997 4778999999999988887766543 22 122223322 3444
Q ss_pred HHHHHHHHHHH-HHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCc
Q 023413 82 LIDVEGNFLVV-KAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSP 160 (282)
Q Consensus 82 ~~~~~~~~~~~-~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~ 160 (282)
......|+..| +|.++..+-++++-++..|++.++++.+++|||+++.||+++.++.+||.......++ -+
T Consensus 79 a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~--------lp 150 (293)
T COG2962 79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS--------LP 150 (293)
T ss_pred HHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC--------Cc
Confidence 44555566555 9999999999999999999999999999999999999999999999999988764332 22
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHHHHhhcc--ccccccccchhHHHHH--HHHH
Q 023413 161 RKGDALVIAGATLYAVSNVSEEFLVKKADRIELMAFLGLFGGIISAVQISILERKE--LQSIHWSAGAALPFFG--YALA 236 (282)
Q Consensus 161 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~ 236 (282)
..++.-+++|+.|...-|+. +.|+.+-.+.....-....+......+..+ ..+-+.+.+..+...| +...
T Consensus 151 ----wval~la~sf~~Ygl~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavp 224 (293)
T COG2962 151 ----WVALALALSFGLYGLLRKKL--KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVP 224 (293)
T ss_pred ----HHHHHHHHHHHHHHHHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHH
Confidence 34555678899999877754 366777777777666666655544443332 1112333333444444 3444
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 237 MFLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 237 ~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
..+|. ..-++.+-...+..+|.+|.+-.+++.+++||+++.
T Consensus 225 L~lf~----~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~ 265 (293)
T COG2962 225 LLLFA----AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDS 265 (293)
T ss_pred HHHHH----HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 44442 246777888899999999999999999999999873
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.80 E-value=7e-17 Score=139.35 Aligned_cols=254 Identities=19% Similarity=0.217 Sum_probs=194.4
Q ss_pred HHhhhhHHhhhcCCCc--hHHHHHHHHHHHHHHHHHHHHhhc--cCCcchhHHHHHHHHHHHHHHHHHHHHhhccchhhH
Q 023413 28 STGFSSSELARKGINA--PTSQSFFNYVLLAIVYGSLMLYRR--QPLKAKWYYYLILGLIDVEGNFLVVKAYQYTSLTSV 103 (282)
Q Consensus 28 ~~~~~~~~l~~~~~~~--p~~~~~~r~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~ 103 (282)
..+...+.+.+++... |..+++.++....+...+.....+ ++++.+++.+...+.+......+.+.|++|.+....
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~ 93 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQ 93 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 3566666776664444 899999999998887777665433 556778888999999998889999999999999999
Q ss_pred hhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCC--CCCCcchhHHHHHHHHHHHHHHHHHH
Q 023413 104 MLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRG--SGSSPRKGDALVIAGATLYAVSNVSE 181 (282)
Q Consensus 104 ~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~--~~~~~~~G~~~~l~a~~~~a~~~v~~ 181 (282)
.+..++.|+.+++++.+++|||.+++|+.++++..+|+++....|..+..+. ...+...|+.+.+.+.++.|.+.+.+
T Consensus 94 ~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~q 173 (303)
T PF08449_consen 94 IVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQ 173 (303)
T ss_pred HHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988665433222 11122349999999999999999999
Q ss_pred HHhhccc--ChhHHHHHHHHHHHHHHHHHHHHHh-h--ccc-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 023413 182 EFLVKKA--DRIELMAFLGLFGGIISAVQISILE-R--KEL-QSIHWSAGAALPFFGYALAMFLFYSFVPILLKTNGATM 255 (282)
Q Consensus 182 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 255 (282)
||..+++ ++.+.+.+....+.+...+.....+ + .+. +....+......++...++.......+....+..++..
T Consensus 174 e~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~ 253 (303)
T PF08449_consen 174 EKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALT 253 (303)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 9988754 4788999999999888876655521 1 111 11111122222223333333333455566788899999
Q ss_pred HHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 256 LNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 256 ~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
.++...++.+.+++++..++||++++
T Consensus 254 ~t~v~t~Rk~~sillS~~~f~~~~~~ 279 (303)
T PF08449_consen 254 TTIVTTLRKFLSILLSVIIFGHPLSP 279 (303)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCcCCh
Confidence 99999999999999999999999886
No 19
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.75 E-value=1.2e-15 Score=122.27 Aligned_cols=236 Identities=16% Similarity=0.056 Sum_probs=179.9
Q ss_pred HhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhh-ccCCcchhHHHHHHHHHHHHHHHHHHHHhhccchhhHhhhc
Q 023413 29 TGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYR-RQPLKAKWYYYLILGLIDVEGNFLVVKAYQYTSLTSVMLLD 107 (282)
Q Consensus 29 ~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~ 107 (282)
-..+.|-+. ....|...+.+|...+.++++.+.+.+ ++..+++++.....|......|.++|.|++..|.+.+..+.
T Consensus 27 Gas~Ak~LF--P~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiE 104 (292)
T COG5006 27 GASFAKSLF--PLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIE 104 (292)
T ss_pred hHHHHHHHc--cccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Confidence 355566666 356688999999999999999877543 37778899999999999888899999999999999999999
Q ss_pred cchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 023413 108 CWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDALVIAGATLYAVSNVSEEFLVKK 187 (282)
Q Consensus 108 ~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~ 187 (282)
++.|+....++. +|. +....+.+++.|+.++...+.+ . +.....|..+++.++.||+.|.+..||.-+.
T Consensus 105 F~GPL~vA~~~s----Rr~--~d~vwvaLAvlGi~lL~p~~~~-~----~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~ 173 (292)
T COG5006 105 FTGPLAVALLSS----RRL--RDFVWVALAVLGIWLLLPLGQS-V----WSLDPVGVALALGAGACWALYIVLGQRAGRA 173 (292)
T ss_pred hccHHHHHHHhc----cch--hhHHHHHHHHHHHHhheeccCC-c----CcCCHHHHHHHHHHhHHHHHHHHHcchhccc
Confidence 999998877643 443 4445566678888888763322 1 2233589999999999999999999998877
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 023413 188 ADRIELMAFLGLFGGIISAVQISILERKELQSIHWSAGAALPFFGY-ALAMFLFYSFVPILLKTNGATMLNLSLLTSDMW 266 (282)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~ 266 (282)
.|..+-+...+..+.++..|+.....+. .-+++.....-++. .++...=|..-...+++.+...+++...+||.+
T Consensus 174 ~~g~~g~a~gm~vAaviv~Pig~~~ag~----~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~ 249 (292)
T COG5006 174 EHGTAGVAVGMLVAALIVLPIGAAQAGP----ALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPAL 249 (292)
T ss_pred CCCchHHHHHHHHHHHHHhhhhhhhcch----hhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHH
Confidence 7778888888999998888875322221 11222222222232 344455566677788899999999999999999
Q ss_pred HHHHHHHHhcccccC
Q 023413 267 AVLIRIGAYHEKVCK 281 (282)
Q Consensus 267 a~l~~~~~~~E~~s~ 281 (282)
+.+.|+.++||++|+
T Consensus 250 aAl~G~i~L~e~ls~ 264 (292)
T COG5006 250 AALSGLIFLGETLTL 264 (292)
T ss_pred HHHHHHHHhcCCCCH
Confidence 999999999999985
No 20
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.66 E-value=1.3e-15 Score=129.40 Aligned_cols=244 Identities=12% Similarity=0.146 Sum_probs=196.1
Q ss_pred HhhhhHHhhhc-CCCchHHHHHHHHHHHHHHHHHHHHhhc-c----CCcchhHHHHHHHHHHHHHHHHHHHHhhccchhh
Q 023413 29 TGFSSSELARK-GINAPTSQSFFNYVLLAIVYGSLMLYRR-Q----PLKAKWYYYLILGLIDVEGNFLVVKAYQYTSLTS 102 (282)
Q Consensus 29 ~~~~~~~l~~~-~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~----~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~ 102 (282)
.+...|++.++ ++..|...+..+...+.+........+. + .++..+...+..|++...++++.+.|+++.+++.
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF 111 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSF 111 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhH
Confidence 45566666665 6777899999988887776665544432 1 1345778889999999999999999999999999
Q ss_pred HhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 023413 103 VMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDALVIAGATLYAVSNVSEE 182 (282)
Q Consensus 103 ~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~ 182 (282)
.+.+..+.|+++.++++++.+|+.+++.+..+...+.|+.+....+.+ -++.|...++++.+..+..+++.|
T Consensus 112 ~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~--------fn~~G~i~a~~s~~~~al~~I~~~ 183 (316)
T KOG1441|consen 112 YQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELS--------FNLFGFISAMISNLAFALRNILSK 183 (316)
T ss_pred HHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecccc--------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999873332 447999999999999999999999
Q ss_pred Hhhc----ccChhHHHHHHHHHHHHHHH-HHHHHHhhccc---cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 023413 183 FLVK----KADRIELMAFLGLFGGIISA-VQISILERKEL---QSIHWSAGAALPFFGYALAMFLFYSFVPILLKTNGAT 254 (282)
Q Consensus 183 ~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 254 (282)
+..+ +.|+.+...++..++...++ |+....|+... ...+|+.......... ...++.|.....++.+.++.
T Consensus 184 ~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSal 262 (316)
T KOG1441|consen 184 KLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSAL 262 (316)
T ss_pred HhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHHHHHHHHHHcccCch
Confidence 8874 36799999999999999988 65544444433 2224443322222223 66677788889999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 255 MLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 255 ~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
..++...++-.+.+..++.+|+|++|+
T Consensus 263 T~~V~g~~K~~~vi~~s~~iF~~pvt~ 289 (316)
T KOG1441|consen 263 TYSVAGHMKRIVVIVVSWLIFGNPVTF 289 (316)
T ss_pred hhhhhccceEEEEEEeEeeeecCCCch
Confidence 999999999999999999999998876
No 21
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.66 E-value=1.6e-14 Score=122.08 Aligned_cols=269 Identities=18% Similarity=0.209 Sum_probs=186.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHhhhcC-CCchHHHHHHHHHHHHHHHHHHH-----H----hh-c-------c--
Q 023413 9 TKKTLLGLGLGQFLSLLITSTGFSSSELARKG-INAPTSQSFFNYVLLAIVYGSLM-----L----YR-R-------Q-- 68 (282)
Q Consensus 9 ~~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~-~~~p~~~~~~r~~~~~l~l~~~~-----~----~~-~-------~-- 68 (282)
+++...|+.+..+..++|-.+....+.+..++ +..|+..++.....-.+-+.++. + .| + .
T Consensus 9 ~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e~ 88 (416)
T KOG2765|consen 9 RWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEEA 88 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhhh
Confidence 45667899999999999999999999999873 33577777655333322222211 0 01 0 0
Q ss_pred ----------------------------------------------------CCcc------------hhH-HHHHHHHH
Q 023413 69 ----------------------------------------------------PLKA------------KWY-YYLILGLI 83 (282)
Q Consensus 69 ----------------------------------------------------~~~~------------~~~-~~~~~g~~ 83 (282)
...+ +.. .-+..+.+
T Consensus 89 d~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~l 168 (416)
T KOG2765|consen 89 DAEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCPL 168 (416)
T ss_pred hhhccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 0001 111 12344444
Q ss_pred HHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchh
Q 023413 84 DVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKG 163 (282)
Q Consensus 84 ~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G 163 (282)
=+..++.++.|+.+++++..+++.+++-+||..++.++.+||+++.+.+++.+.+.|++++..++.+.+++..+.+...|
T Consensus 169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG 248 (416)
T KOG2765|consen 169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLG 248 (416)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHH
Confidence 45558889999999999999999999999999999999999999999999999999999999976655444455566899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc----ChhHHHHHHHHHHHHHHHHHHHHHhhcccccccc--ccch----hHHHHHH
Q 023413 164 DALVIAGATLYAVSNVSEEFLVKKA----DRIELMAFLGLFGGIISAVQISILERKELQSIHW--SAGA----ALPFFGY 233 (282)
Q Consensus 164 ~~~~l~a~~~~a~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~ 233 (282)
.++++.+|+.||+|.++.||...+. |-....++..++..++++|...+.+....+.++. +... ..-++++
T Consensus 249 ~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligt 328 (416)
T KOG2765|consen 249 NLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGT 328 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHH
Confidence 9999999999999999999877655 3445667777777787776655544322232222 1111 1224455
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 234 ALAMFLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
.++=++|..+ .-..++.+..+.+.++...+++.+.++-|..+|+
T Consensus 329 vvSDylW~~a----~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~ 372 (416)
T KOG2765|consen 329 VVSDYLWAKA----VLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSA 372 (416)
T ss_pred HHHHHHHHHH----HHhccchhheeeeeEeeeHHHHHHHHHcCCCCCH
Confidence 6665665443 3444555555555555667999999887887775
No 22
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.64 E-value=1.2e-13 Score=114.75 Aligned_cols=209 Identities=18% Similarity=0.164 Sum_probs=153.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeec
Q 023413 69 PLKAKWYYYLILGLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSD 148 (282)
Q Consensus 69 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~ 148 (282)
..+++..++...+++....|.+.+.++++.+++..+++.++..++|++++.+++|+|++++||.++.+.+.|+.++..++
T Consensus 12 ~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~ 91 (244)
T PF04142_consen 12 KSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS 91 (244)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence 34567778888899988889999999999999999999999999999999999999999999999999999999997754
Q ss_pred CCCCCCC---------CCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccC--hhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 023413 149 VHAGDRG---------SGSSPRKGDALVIAGATLYAVSNVSEEFLVKKAD--RIELMAFLGLFGGIISAVQISILERKEL 217 (282)
Q Consensus 149 ~~~~~~~---------~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (282)
....++. .+.+...|....+.++++-++..++.+|..|+.+ ....+......+.+..++.....++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~ 171 (244)
T PF04142_consen 92 SQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAI 171 (244)
T ss_pred ccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4331111 1234568999999999999999999999998764 3344555555566655554433333222
Q ss_pred cc----cccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 218 QS----IHWSAGAALPFFGYALAMFLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 218 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
.+ ..++.+.+........+. .......++.+...-+.....+.+++.+.++.+||+++|.
T Consensus 172 ~~~g~f~G~~~~~~~~i~~~a~gG----llva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~ 235 (244)
T PF04142_consen 172 SESGFFHGYSWWVWIVIFLQAIGG----LLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSL 235 (244)
T ss_pred ccCCchhhcchHHHHHHHHHHHhh----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 21 123333332222212221 2233356777777777777777999999999999999985
No 23
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.61 E-value=2e-14 Score=103.43 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc---c---CCcchhHHHHHHHHHHHHHHH
Q 023413 16 LGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR---Q---PLKAKWYYYLILGLIDVEGNF 89 (282)
Q Consensus 16 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~---~---~~~~~~~~~~~~g~~~~~~~~ 89 (282)
.++++++|+.++...++.|.--+ ..+|...++.|..+...++..++...+ . ..++.|.+..+.|+.+.....
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence 47789999999999999988763 567899999999999988888877654 2 356778888888877777688
Q ss_pred HHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEe
Q 023413 90 LVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 90 ~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
++|+|++...++.+.++..++|.++.+++++++|||+|.++|+|+.++.+|+.++..
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999999999999999999999999998753
No 24
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.51 E-value=3.9e-11 Score=99.21 Aligned_cols=237 Identities=14% Similarity=0.198 Sum_probs=183.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhc--cCCcchhHHHHHHHHHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHH
Q 023413 40 GINAPTSQSFFNYVLLAIVYGSLMLYRR--QPLKAKWYYYLILGLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFL 117 (282)
Q Consensus 40 ~~~~p~~~~~~r~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il 117 (282)
.+.+|.++.+.+.+.+.+.-..++..++ ...+++|+.+...+..+....++-+.|++|++-....+-.++..+-++++
T Consensus 47 rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlm 126 (327)
T KOG1581|consen 47 RFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLM 126 (327)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHH
Confidence 4457889999998888877655554433 44567888899999999888999999999999999999999999999999
Q ss_pred HHHHhhcccchhhhhhHHHhhhcceeeEeecCCC-CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcc--cChhHHH
Q 023413 118 TWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHA-GDRGSGSSPRKGDALVIAGATLYAVSNVSEEFLVKK--ADRIELM 194 (282)
Q Consensus 118 ~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~-~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~--~~~~~~~ 194 (282)
+.++.|+|.+..+.....++-.|+.+....+..+ .......+...|..+....-+.-++.+..++++.++ .++.+++
T Consensus 127 g~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM 206 (327)
T KOG1581|consen 127 GTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMM 206 (327)
T ss_pred HHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHH
Confidence 9999999999999999999999999887754333 222344567899999999999999999999999885 4588999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc-----ccccchhHHHHH-H-HHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 023413 195 AFLGLFGGIISAVQISILERKELQSI-----HWSAGAALPFFG-Y-ALAMFLFYSFVPILLKTNGATMLNLSLLTSDMWA 267 (282)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a 267 (282)
.+..+.+.+..... .+.++...+.. +.+....+.+.. . .+++ ..+.+.++..++.....++.++-+++
T Consensus 207 ~~vNLf~~i~~~~~-li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ----~FI~~TI~~FGslt~t~I~ttRk~~s 281 (327)
T KOG1581|consen 207 FGVNLFSAILNGTY-LILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQ----LFIFYTIERFGSLTFTTIMTTRKMVS 281 (327)
T ss_pred HHHHHHHHHHHHHh-hhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhh----heehhhHhhcccHHHHHHHHHHHHHH
Confidence 99999998887655 34333222211 111111222222 1 2333 33445678889999999999999999
Q ss_pred HHHHHHHhcccccC
Q 023413 268 VLIRIGAYHEKVCK 281 (282)
Q Consensus 268 ~l~~~~~~~E~~s~ 281 (282)
++++.+.+|+++++
T Consensus 282 i~lS~i~f~h~~s~ 295 (327)
T KOG1581|consen 282 IMLSCIVFGHPLSS 295 (327)
T ss_pred HHHHHHHhCCccch
Confidence 99999999999886
No 25
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.40 E-value=6.5e-13 Score=99.17 Aligned_cols=118 Identities=24% Similarity=0.446 Sum_probs=97.6
Q ss_pred HHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc-----cCCcchhHHHHHHHHHHHHH-HHHHHHHhhc
Q 023413 24 LLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR-----QPLKAKWYYYLILGLIDVEG-NFLVVKAYQY 97 (282)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~-~~~~~~al~~ 97 (282)
++|+......|+..++ .+|...+++|+..+.+ ..+.....+ +.+++++......|.+.... +.++++++++
T Consensus 1 ~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 77 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKY 77 (126)
T ss_pred ceeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHh
Confidence 4688888889888863 7799999999999997 444443322 33455666677778775444 8888899999
Q ss_pred cchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceee
Q 023413 98 TSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTV 144 (282)
Q Consensus 98 ~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~ 144 (282)
.+++.++++.++.|+++.+++++++|||+++++++|+.+++.|++++
T Consensus 78 ~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 78 ISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765
No 26
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.35 E-value=2.3e-11 Score=102.70 Aligned_cols=132 Identities=18% Similarity=0.174 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc---cCCcchhHHHHHHHHHHHHH
Q 023413 11 KTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR---QPLKAKWYYYLILGLIDVEG 87 (282)
Q Consensus 11 ~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~---~~~~~~~~~~~~~g~~~~~~ 87 (282)
...+|..+++.++++|+......|+..++.+.++.....+++..+.+++.+.....+ ..+.+++...+..+.++...
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTAL 204 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 446799999999999999999999988643333455666789999988888766543 22234455566677776555
Q ss_pred -HHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcce
Q 023413 88 -NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLV 142 (282)
Q Consensus 88 -~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~ 142 (282)
..++++++++.+++.++.+.++.|+++.+++++++|||++++++.|..+.+.|+.
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 7778899999999999999999999999999999999999999999999999863
No 27
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.35 E-value=3.2e-09 Score=90.26 Aligned_cols=261 Identities=15% Similarity=0.117 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhcC--CCchHHHHHHHHHHHHHHHHHHHHhh-----c----------cCCcchhHHHHH
Q 023413 17 GLGQFLSLLITSTGFSSSELARKG--INAPTSQSFFNYVLLAIVYGSLMLYR-----R----------QPLKAKWYYYLI 79 (282)
Q Consensus 17 ~~~~~~a~~~~~~~~~~~~l~~~~--~~~p~~~~~~r~~~~~l~l~~~~~~~-----~----------~~~~~~~~~~~~ 79 (282)
+........++......++..+++ ...|...++.-=..-.++....+++. + ...+++..+..+
T Consensus 18 ~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~v 97 (345)
T KOG2234|consen 18 LSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSV 97 (345)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHH
Confidence 444556666776777777777654 13344444443222222222222221 1 111223445566
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCC--C-CCC
Q 023413 80 LGLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAG--D-RGS 156 (282)
Q Consensus 80 ~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~--~-~~~ 156 (282)
.+++...-|-+.+.++.+.+++..++..++..+-|.++..+++++|++++||.++.+...|+.++-.+..... . ...
T Consensus 98 Pa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~ 177 (345)
T KOG2234|consen 98 PALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESS 177 (345)
T ss_pred HHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCc
Confidence 6777766676889999999999999999999999999999999999999999999999999999973322211 1 223
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhhcccC--hhHHHHHHHHHHHHHHHHHHHHHhhcccc----ccccccchhHHH
Q 023413 157 GSSPRKGDALVIAGATLYAVSNVSEEFLVKKAD--RIELMAFLGLFGGIISAVQISILERKELQ----SIHWSAGAALPF 230 (282)
Q Consensus 157 ~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 230 (282)
+.++..|....+.++++-++..++.++..|+.+ ....+-....+|.+..+......++.... ...|+...+...
T Consensus 178 ~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vV 257 (345)
T KOG2234|consen 178 AQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVV 257 (345)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHH
Confidence 556678999999999999999999999997644 33333334445555554443333333221 112333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 231 FGYALAMFLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
+.-+.+... .....++.+...-........+++.+.++.++|-++|.
T Consensus 258 l~~a~gGLl----vs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~ 304 (345)
T KOG2234|consen 258 LLNAVGGLL----VSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTL 304 (345)
T ss_pred HHHhccchh----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence 322222211 12244555555555555555888899998888888763
No 28
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.30 E-value=1.1e-11 Score=91.15 Aligned_cols=101 Identities=18% Similarity=0.429 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHhhc-------cCCcchhHHHHHHHHHHHHH-HHHHHHHhhccchhhHhhhccchhHHHHHHHHH
Q 023413 49 FFNYVLLAIVYGSLMLYRR-------QPLKAKWYYYLILGLIDVEG-NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWI 120 (282)
Q Consensus 49 ~~r~~~~~l~l~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~-~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l 120 (282)
.+|+..+.+.+......++ ...++++.+....|.++... +.++++|.++.+ +.++++.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 5788899888888776543 11235566667778887745 777779999999 58899999999999999999
Q ss_pred HhhcccchhhhhhHHHhhhcceeeEeecCC
Q 023413 121 FLKTKYRYKKITGVVVCVAGLVTVIFSDVH 150 (282)
Q Consensus 121 ~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~ 150 (282)
++|||++++++.++.++++|+.++..++..
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999885543
No 29
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.27 E-value=2.1e-09 Score=87.97 Aligned_cols=172 Identities=25% Similarity=0.284 Sum_probs=131.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhc-----------------cCCcchhHHHHHHHHHHHHHHHHHHHHhhccchhh
Q 023413 40 GINAPTSQSFFNYVLLAIVYGSLMLYRR-----------------QPLKAKWYYYLILGLIDVEGNFLVVKAYQYTSLTS 102 (282)
Q Consensus 40 ~~~~p~~~~~~r~~~~~l~l~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~ 102 (282)
++..|...+..-++-=.+++..+...|. .+++.+.+.++.-+++...+..+.+.++.+++++.
T Consensus 35 gfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASs 114 (372)
T KOG3912|consen 35 GFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASS 114 (372)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHH
Confidence 4556666655444444444444443322 11133344456688999999999999999999999
Q ss_pred HhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCC--CCCCcchhHHHHHHHHHHHHHHHHH
Q 023413 103 VMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRG--SGSSPRKGDALVIAGATLYAVSNVS 180 (282)
Q Consensus 103 ~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~--~~~~~~~G~~~~l~a~~~~a~~~v~ 180 (282)
.+.+.....+|+-+++.-+++.+++.+||.|+.....|++.+...|.....+. .-.+...|+++.+.+-+.-|+..+.
T Consensus 115 fQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~ 194 (372)
T KOG3912|consen 115 FQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVC 194 (372)
T ss_pred HHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987654433222 2234568999999999999999999
Q ss_pred HHHhhcc--cChhHHHHHHHHHHHHHHHHHHHH
Q 023413 181 EEFLVKK--ADRIELMAFLGLFGGIISAVQISI 211 (282)
Q Consensus 181 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 211 (282)
.+|..++ .+|.+..++...+|.+.+......
T Consensus 195 Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~ 227 (372)
T KOG3912|consen 195 EEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIP 227 (372)
T ss_pred HHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHH
Confidence 9988775 569999999999997766554433
No 30
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2.1e-09 Score=90.04 Aligned_cols=258 Identities=14% Similarity=0.062 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHH--HHHHHHHHHHHHHHHhhc----cCCcchhHHHHHHHHHHHHH
Q 023413 14 LGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSF--FNYVLLAIVYGSLMLYRR----QPLKAKWYYYLILGLIDVEG 87 (282)
Q Consensus 14 ~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~--~r~~~~~l~l~~~~~~~~----~~~~~~~~~~~~~g~~~~~~ 87 (282)
..+.-++.-.+......+.-|+.-. .+..|..+.. .+++.+.+.+...-..+- +.+++..++++...++..+.
T Consensus 12 ~~l~sa~~Y~~sS~lm~vvNK~vls-~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~ 90 (314)
T KOG1444|consen 12 SPLLSALFYCLSSILMTVVNKIVLS-SYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGM 90 (314)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHH
Confidence 3333333334444444444555444 3333555554 888888876665443332 34456677778888887666
Q ss_pred HHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHHHH
Q 023413 88 NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDALV 167 (282)
Q Consensus 88 ~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~ 167 (282)
.+.-..+++|.++...+++....|+++++.+.+++|.|+++..|.++....+|......+|.. ....|..++
T Consensus 91 i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s--------f~~~gY~w~ 162 (314)
T KOG1444|consen 91 LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLS--------FNLRGYSWA 162 (314)
T ss_pred HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccce--------ecchhHHHH
Confidence 666679999999999999999999999999999999999999999999999998888775544 113599999
Q ss_pred HHHHHHHHHHHHHHHHhhccc--ChhHHHHHHHHHHHHHHHHHHHHHhhcc-c--cccccccc-hhHH-HHHHHHHHHHH
Q 023413 168 IAGATLYAVSNVSEEFLVKKA--DRIELMAFLGLFGGIISAVQISILERKE-L--QSIHWSAG-AALP-FFGYALAMFLF 240 (282)
Q Consensus 168 l~a~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~-~~~~-~~~~~~~~~~~ 240 (282)
+...++-+.+.+..||..+.. +......|-.+.+.....+.....+..+ + +..+|... .... .++..+++..-
T Consensus 163 ~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~is 242 (314)
T KOG1444|consen 163 LANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGIS 242 (314)
T ss_pred HHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHH
Confidence 999999999999999987654 3567777777777777665554444322 1 11112211 1111 12222222222
Q ss_pred HHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 241 YSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
+......+..++..........-..+.+-+.++.|+++++
T Consensus 243 -y~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~ 282 (314)
T KOG1444|consen 243 -YTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTF 282 (314)
T ss_pred -HHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceech
Confidence 2223334455555555554444555666666677777776
No 31
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.20 E-value=4.2e-09 Score=87.58 Aligned_cols=201 Identities=11% Similarity=0.067 Sum_probs=132.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccchhhHhhhccchhHH-HHHHHHHHhhcccchhhhh----hHHHhhhcceeeEe
Q 023413 72 AKWYYYLILGLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPC-VMFLTWIFLKTKYRYKKIT----GVVVCVAGLVTVIF 146 (282)
Q Consensus 72 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~-~~il~~l~l~ek~~~~~~~----g~~l~~~Gv~l~~~ 146 (282)
..+..-++.|++=..++...+.|+++.+++.+.++..-..+. +.+++.++++|--+..+++ ++++.++|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 555566777777777799999999999999999999777766 8899999999987777755 88888999999988
Q ss_pred ecCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHHHHhhccccccccccch
Q 023413 147 SDVHAGDRGSGSSPRKGDALVIAGATLYAVSNVSEEFLVKKADRIELMAFLGLFGGIISAVQISILERKELQSIHWSAGA 226 (282)
Q Consensus 147 ~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (282)
.|+++++.+.+.+..+|....+.+.+.|..|.+..|. .+.|+.+...-+..--.+-..++....+....+...|....
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil 200 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNIL 200 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhH
Confidence 6665443223445568999999999999999999884 34666665554432222222222211111111222233322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhccccc
Q 023413 227 ALPFFGYALAMFLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVC 280 (282)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s 280 (282)
..... +.+...+..+.. ..+.........+.++++.+.|.+++||+=+
T Consensus 201 ~G~~w--~ignl~~~is~~----~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt 248 (269)
T PF06800_consen 201 TGLIW--GIGNLFYLISAQ----KNGVATAFTLSQLGVVISTLGGIFILKEKKT 248 (269)
T ss_pred HHHHH--HHHHHHHHHhHH----hccchhhhhHHhHHHHHHHhhhheEEEecCc
Confidence 22222 333344444433 3333333334444599999999999999743
No 32
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.16 E-value=8.8e-09 Score=85.45 Aligned_cols=250 Identities=15% Similarity=0.130 Sum_probs=164.4
Q ss_pred HHHHHHhhhhHHhhhc---CCCchHHHHHHHHHHHHHHHHHHHHhhc-----cCCcchhHHHH---HHHHHHHHH-HHHH
Q 023413 24 LLITSTGFSSSELARK---GINAPTSQSFFNYVLLAIVYGSLMLYRR-----QPLKAKWYYYL---ILGLIDVEG-NFLV 91 (282)
Q Consensus 24 ~~~~~~~~~~~~l~~~---~~~~p~~~~~~r~~~~~l~l~~~~~~~~-----~~~~~~~~~~~---~~g~~~~~~-~~~~ 91 (282)
+.|=+..+..++..++ .+.-|...+.++..+-.++.......++ .+...+|..++ ....+..+. ..+.
T Consensus 22 l~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLS 101 (349)
T KOG1443|consen 22 LLYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLS 101 (349)
T ss_pred HHHHHHHHHHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccc
Confidence 4444444444444433 5677999998887776665554433222 12234455443 233333344 6677
Q ss_pred HHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHHHHHHHH
Q 023413 92 VKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDALVIAGA 171 (282)
Q Consensus 92 ~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~l~a~ 171 (282)
+.|++|++.+..+...+++++|+.+++.++.=||+++.-..-+.++..|+++.+..+.. -...|..+...+.
T Consensus 102 N~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq--------f~i~Gf~lv~~aS 173 (349)
T KOG1443|consen 102 NWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ--------FNIEGFFLVLAAS 173 (349)
T ss_pred cceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc--------eeehhHHHHHHHH
Confidence 89999999999999999999999999999888999999999999999999999873221 2346888888777
Q ss_pred HHHHHHHHHHHHhhccc-----ChhHHHHHHHHHHHHHHHHHHHHHhhcccc--cccccc-------chhHHHHHHHHHH
Q 023413 172 TLYAVSNVSEEFLVKKA-----DRIELMAFLGLFGGIISAVQISILERKELQ--SIHWSA-------GAALPFFGYALAM 237 (282)
Q Consensus 172 ~~~a~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~ 237 (282)
.+-++--...++..++. +|............+.+++..+.+|+.... ...++. +....+...+...
T Consensus 174 ~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~la 253 (349)
T KOG1443|consen 174 LLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLA 253 (349)
T ss_pred HhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHH
Confidence 77666555555555443 477777777777777777777778874322 111111 1111111122222
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 238 FLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 238 ~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
+..-..-..+....++...++....+-+...+++..+.+|.+|.
T Consensus 254 F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~ 297 (349)
T KOG1443|consen 254 FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSL 297 (349)
T ss_pred HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhh
Confidence 33323334456677777778888888899999999999998873
No 33
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.12 E-value=3.5e-10 Score=90.28 Aligned_cols=252 Identities=13% Similarity=0.163 Sum_probs=172.9
Q ss_pred HHHHHHhhhhHHhhhcCC----------CchHHHHHHHHHHHHHHHHHHHHhhc--cCCcchhHHHHHHHHHHHHHHHHH
Q 023413 24 LLITSTGFSSSELARKGI----------NAPTSQSFFNYVLLAIVYGSLMLYRR--QPLKAKWYYYLILGLIDVEGNFLV 91 (282)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~----------~~p~~~~~~r~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~ 91 (282)
+|.-..++.-..+.+..+ -....+++.++..-.++.=++...|+ +.++.+-+.+...+..........
T Consensus 23 vCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~YaAcs~sYLlAMVss 102 (337)
T KOG1580|consen 23 VCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYAACSASYLLAMVSS 102 (337)
T ss_pred heehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccccccCCcchHHHHHHHHHHHHHHhc
Confidence 455556677777665411 12344566666666655444443343 445566667777777776768888
Q ss_pred HHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHHHHHHHH
Q 023413 92 VKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDALVIAGA 171 (282)
Q Consensus 92 ~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~l~a~ 171 (282)
+.|++|.+-....+-.++.|+-+++++.++.+++.+|+++..++.++.|+++....+.. ....++.....|.++.+++-
T Consensus 103 N~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K-v~g~e~~t~g~GElLL~lSL 181 (337)
T KOG1580|consen 103 NQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK-VGGAEDKTFGFGELLLILSL 181 (337)
T ss_pred cchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc-cCCCcccccchHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999874333 22223444568999999999
Q ss_pred HHHHHHHHHHHHhhccc--ChhHHHHHHHHHHHHHHHHHHHHHhhcccc------ccccccchh-HHHHHHHHHHHHHHH
Q 023413 172 TLYAVSNVSEEFLVKKA--DRIELMAFLGLFGGIISAVQISILERKELQ------SIHWSAGAA-LPFFGYALAMFLFYS 242 (282)
Q Consensus 172 ~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~ 242 (282)
-.-++....++|..+.+ +..+++.+..+.+.+.+.....+ .+...+ ..+..+|.. ++-+...+++ .
T Consensus 182 ~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lf-TGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ----~ 256 (337)
T KOG1580|consen 182 AMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLF-TGELWEFFYFVQRHPYVFWDLTLLAIASCLGQ----W 256 (337)
T ss_pred HhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhhee-hhhHHHHHHHHHhccHHHHHHHHHHHHHHhhh----H
Confidence 99999999998876543 34567777777777665443322 111111 111111111 1112234444 3
Q ss_pred HHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 243 FVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 243 ~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
.++......++..-++...++-.++++.+.++++++++.
T Consensus 257 fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~ 295 (337)
T KOG1580|consen 257 FIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSG 295 (337)
T ss_pred HHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcH
Confidence 344566777777778888888999999999999999874
No 34
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.05 E-value=2.9e-09 Score=91.55 Aligned_cols=132 Identities=11% Similarity=-0.091 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc-c----CCcchhHHHHHHHHHHHH
Q 023413 12 TLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR-Q----PLKAKWYYYLILGLIDVE 86 (282)
Q Consensus 12 ~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~----~~~~~~~~~~~~g~~~~~ 86 (282)
...|.++++.++++|+......|+..+ . ++...+.++...+.+.+.++..... . .+.++|......++++..
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~ 224 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLPL-P--VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSI 224 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCC-C--cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHH
Confidence 356999999999999999999888764 2 2455677888888887777655432 1 223456666677777655
Q ss_pred H-HHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEe
Q 023413 87 G-NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 87 ~-~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
. ..++++++++.+++.++++.++.|++++++++++++|++++.+++|..+.+.|+.+...
T Consensus 225 ~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 225 IAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5 77788999999999999999999999999999999999999999999999999988755
No 35
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.02 E-value=5e-09 Score=92.12 Aligned_cols=137 Identities=13% Similarity=0.142 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhccCCcc------hhH--HHHHHHHH
Q 023413 12 TLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQPLKA------KWY--YYLILGLI 83 (282)
Q Consensus 12 ~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~------~~~--~~~~~g~~ 83 (282)
...|..+.+.++++|+...+..|...++ ..++...+++...++.+...+.....++.... +.. ..+..++.
T Consensus 187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~ 265 (358)
T PLN00411 187 WLIGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII 265 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH
Confidence 3568899999999999999999887753 33445666676666665554443332211111 111 12223333
Q ss_pred HHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecC
Q 023413 84 DVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDV 149 (282)
Q Consensus 84 ~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~ 149 (282)
......+.++++++.+++.+++..++.|+++.++++++++|++++.+++|.++++.|+++...++.
T Consensus 266 t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~ 331 (358)
T PLN00411 266 TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKA 331 (358)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 323366677999999999999999999999999999999999999999999999999999876443
No 36
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.01 E-value=8e-09 Score=88.82 Aligned_cols=134 Identities=10% Similarity=0.011 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhcc---CCcchhHHHHHHHHHHHHH-
Q 023413 12 TLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQ---PLKAKWYYYLILGLIDVEG- 87 (282)
Q Consensus 12 ~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~---~~~~~~~~~~~~g~~~~~~- 87 (282)
...|.++++.++++|+......|+..++ .+|.... +....+.+.+.++...... .+...+...+..|++....
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~~--~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~ 222 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGAE--HGPATVA-IGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALP 222 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcc--CCchHHH-HHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999988642 3454544 4445566666665554332 1122233345677776666
Q ss_pred HHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeec
Q 023413 88 NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSD 148 (282)
Q Consensus 88 ~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~ 148 (282)
+.++++++++.+++.++++.++.|+++.++++++++|+++..+++|.++++.|++......
T Consensus 223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 6677899999999999999999999999999999999999999999999999998886543
No 37
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.99 E-value=1e-08 Score=79.90 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCc
Q 023413 81 GLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSP 160 (282)
Q Consensus 81 g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~ 160 (282)
.++=...++.+..+++..++++++.+..+...++.+++++++|+|+.-.++++..+++.|++++...|.. ..+.
T Consensus 60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~------~a~e 133 (290)
T KOG4314|consen 60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE------HADE 133 (290)
T ss_pred EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch------hhhh
Confidence 3333445999999999999999999999999999999999999999999999999999999999864433 4456
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccC
Q 023413 161 RKGDALVIAGATLYAVSNVSEEFLVKKAD 189 (282)
Q Consensus 161 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~ 189 (282)
+.|+..+..+++.-|+|.+.-|+...+.+
T Consensus 134 ~iGi~~AV~SA~~aAlYKV~FK~~iGnAn 162 (290)
T KOG4314|consen 134 IIGIACAVGSAFMAALYKVLFKMFIGNAN 162 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 89999999999999999999998876655
No 38
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.96 E-value=1.6e-08 Score=80.31 Aligned_cols=239 Identities=12% Similarity=0.040 Sum_probs=170.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhc-cCCcchhHHHHHHHHHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHH
Q 023413 40 GINAPTSQSFFNYVLLAIVYGSLMLYRR-QPLKAKWYYYLILGLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLT 118 (282)
Q Consensus 40 ~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~ 118 (282)
|+.-.+...+.+.+++.+-++.+-+.|- .-+..+.++++..+.+.....+..-.+++|.++...++..++..+..+..+
T Consensus 33 gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygE 112 (309)
T COG5070 33 GFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGE 112 (309)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhH
Confidence 5555567788888888877766544332 222445555666777666656666799999999999999999999999999
Q ss_pred HHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcc--cChhHHHHH
Q 023413 119 WIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDALVIAGATLYAVSNVSEEFLVKK--ADRIELMAF 196 (282)
Q Consensus 119 ~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~--~~~~~~~~~ 196 (282)
.+++|.|.+-.+.....+.+..-+.-..+|.... .......+.|.+|+..-++.-+.+....|+..+- ....+.++|
T Consensus 113 vl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~-~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfY 191 (309)
T COG5070 113 VLFFGGRVTSLELLSFILMVLSSVVATWGDQQAS-AFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFY 191 (309)
T ss_pred HHHhcCccchhhHHHHHHHHHHHHHhccchhhHH-HHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHH
Confidence 9999999999999999998888887777554321 1122244579999999999999999999988763 446788999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccc--h--hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHH
Q 023413 197 LGLFGGIISAVQISILERKELQSIHWSAG--A--ALPFFGYALAMFLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRI 272 (282)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~ 272 (282)
..+.+..++.....++|..+..+..-+.. . +..+.| ..+...- ++-.+..+...+...++...+.-.-..+.|.
T Consensus 192 nNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISg-l~svgiS-y~saWcvrVtSSTtySMvGALNKlp~alaGl 269 (309)
T COG5070 192 NNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISG-LCSVGIS-YCSAWCVRVTSSTTYSMVGALNKLPIALAGL 269 (309)
T ss_pred hhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHH-HHHhhhh-hccceeEeehhhhHHHHHHHhhhChHHHhhh
Confidence 99999999888877776543332221111 1 122222 1111111 2223456677777777877777888899999
Q ss_pred HHhcccccC
Q 023413 273 GAYHEKVCK 281 (282)
Q Consensus 273 ~~~~E~~s~ 281 (282)
++|+|+.++
T Consensus 270 vffdap~nf 278 (309)
T COG5070 270 VFFDAPVNF 278 (309)
T ss_pred hhcCCchhH
Confidence 999999875
No 39
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.92 E-value=1.7e-08 Score=86.87 Aligned_cols=130 Identities=15% Similarity=0.055 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc----cCCcchhHHHHHHHHHHHHHH
Q 023413 13 LLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR----QPLKAKWYYYLILGLIDVEGN 88 (282)
Q Consensus 13 ~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~ 88 (282)
..|.++++.++++|+...+..|+..++ .++..... ..+.+.+.+.....+ ..+...+......|......+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~--~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~ 229 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARG--KNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGY 229 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCC--CCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999998643 23443322 222333333222222 122334544555554443347
Q ss_pred HHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEee
Q 023413 89 FLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFS 147 (282)
Q Consensus 89 ~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~ 147 (282)
.++++++++.+++.++...+..|++..++++++++|+++..+++|.++++.|+.+....
T Consensus 230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 78889999999999999999999999999999999999999999999999999887653
No 40
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.87 E-value=2e-08 Score=85.80 Aligned_cols=131 Identities=19% Similarity=0.186 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhhc-C-CCchHHHHHHHHHHHHHHHHHHHHhhc-c---CCcchhHHHHHHHHHHHH
Q 023413 13 LLGLGLGQFLSLLITSTGFSSSELARK-G-INAPTSQSFFNYVLLAIVYGSLMLYRR-Q---PLKAKWYYYLILGLIDVE 86 (282)
Q Consensus 13 ~~g~~~~~~~a~~~~~~~~~~~~l~~~-~-~~~p~~~~~~r~~~~~l~l~~~~~~~~-~---~~~~~~~~~~~~g~~~~~ 86 (282)
..|..+++.++++|+......|...++ + ..+......+......+.+......++ + ....++......+.+...
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 222 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIG 222 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence 457778888999999888877765321 1 011122233333333222222222121 1 112233333444444444
Q ss_pred -HHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhccee
Q 023413 87 -GNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVT 143 (282)
Q Consensus 87 -~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l 143 (282)
.+.++++++++.+++.++...++.|++..+++++++||++++.+++|..+++.|+.+
T Consensus 223 l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 223 GAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 477888999999999999999999999999999999999999999999999999875
No 41
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.87 E-value=4.8e-08 Score=84.25 Aligned_cols=137 Identities=12% Similarity=0.041 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhcCCC-chHHHHHHHHHHHHHHHHHHHHh-hc---------cCCcchhHHHHHH
Q 023413 12 TLLGLGLGQFLSLLITSTGFSSSELARKGIN-APTSQSFFNYVLLAIVYGSLMLY-RR---------QPLKAKWYYYLIL 80 (282)
Q Consensus 12 ~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~-~p~~~~~~r~~~~~l~l~~~~~~-~~---------~~~~~~~~~~~~~ 80 (282)
...|..+++.++++|+......|+..++... .......+....+.+........ .+ ..+...+...+..
T Consensus 141 ~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 141 AMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence 3579999999999999999999997653222 22233344444443333222111 11 1223446566677
Q ss_pred HHHHHHH-HHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeec
Q 023413 81 GLIDVEG-NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSD 148 (282)
Q Consensus 81 g~~~~~~-~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~ 148 (282)
|++.... ..++++++++.+++.++.+..+.|++..++++++++|+++..+++|..+++.|+++...++
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 7777766 6667799999999999999999999999999999999999999999999999998876533
No 42
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.87 E-value=7.1e-08 Score=74.64 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhhc-----CCCchHHHHHHHHHHHHHHHHHHHHhhcc-----------C-----Ccch
Q 023413 15 GLGLGQFLSLLITSTGFSSSELARK-----GINAPTSQSFFNYVLLAIVYGSLMLYRRQ-----------P-----LKAK 73 (282)
Q Consensus 15 g~~~~~~~a~~~~~~~~~~~~l~~~-----~~~~p~~~~~~r~~~~~l~l~~~~~~~~~-----------~-----~~~~ 73 (282)
|+++++.+.++.+..++..|+..++ ...+|.....+....+.+++.+.....+. . ..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6778889999999999999998887 57889999999999999998887665330 0 1122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhccee
Q 023413 74 WYYYLILGLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVT 143 (282)
Q Consensus 74 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l 143 (282)
+...+..|++....++..+..++++++...+++.....+.+.+++.++++|+++.+++.|+.+++.|+.+
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 3344566677777799999999999999999999999999999999999999999999999999999875
No 43
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.82 E-value=2e-08 Score=82.16 Aligned_cols=251 Identities=14% Similarity=0.125 Sum_probs=173.8
Q ss_pred hhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc-cCCcchhHHHHHHHHHHHHHHHHHHHHhhc-cchhhHhhhcc
Q 023413 31 FSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR-QPLKAKWYYYLILGLIDVEGNFLVVKAYQY-TSLTSVMLLDC 108 (282)
Q Consensus 31 ~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~al~~-~~~~~~~~l~~ 108 (282)
++...+.+++......+++.++++-+.--+++--+.. .+++.+.+.+...-...+..+.+.++++++ .+...-.+..+
T Consensus 20 v~lE~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRs 99 (330)
T KOG1583|consen 20 VFLELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRS 99 (330)
T ss_pred HHHHHHHHhCCCCeeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEec
Confidence 3444555544444567888888777654444331111 334455666665555555559999999999 77788888888
Q ss_pred chhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCC------CC---CCCc--chhHHHHHHHHHHHHHH
Q 023413 109 WTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDR------GS---GSSP--RKGDALVIAGATLYAVS 177 (282)
Q Consensus 109 ~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~------~~---~~~~--~~G~~~~l~a~~~~a~~ 177 (282)
..++.++++++++.|+|.+.+|+.++++.-+|+++....+..+..+ .+ ++.. ..|+.+...+-+.-|..
T Consensus 100 gsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~m 179 (330)
T KOG1583|consen 100 GSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYM 179 (330)
T ss_pred CcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999998754443221 11 1111 25888888888889999
Q ss_pred HHHHHHhhccc--ChhHHHHHHHHHHHHHHHHHHH-H-------Hhhcc--ccccccc-cchhHHHHHHHHHHHHHHHHH
Q 023413 178 NVSEEFLVKKA--DRIELMAFLGLFGGIISAVQIS-I-------LERKE--LQSIHWS-AGAALPFFGYALAMFLFYSFV 244 (282)
Q Consensus 178 ~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 244 (282)
.+.+++..|++ |+-+.++|....+....+...- + ..... .+..... +..+..+++..+.++....+.
T Consensus 180 giyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgV 259 (330)
T KOG1583|consen 180 GIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGV 259 (330)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhh
Confidence 99998777654 5889999999988877643310 0 00010 0111111 222344555677777776777
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 245 PILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
..+....++..+++...++-.++.+++...|++++++
T Consensus 260 y~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~ 296 (330)
T KOG1583|consen 260 YILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTP 296 (330)
T ss_pred hhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCH
Confidence 7777777888888888889999999999999998875
No 44
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.81 E-value=1.1e-07 Score=77.81 Aligned_cols=244 Identities=14% Similarity=0.137 Sum_probs=171.1
Q ss_pred hhhhHHhhhc-CCC-chHHHHHHHHHHHHHHHHHHHH-hhccCCcchhHHHHHHHHHHHHHHHHHHHHhhccchhhHhhh
Q 023413 30 GFSSSELARK-GIN-APTSQSFFNYVLLAIVYGSLML-YRRQPLKAKWYYYLILGLIDVEGNFLVVKAYQYTSLTSVMLL 106 (282)
Q Consensus 30 ~~~~~~l~~~-~~~-~p~~~~~~r~~~~~l~l~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l 106 (282)
+..-.+..+. |+. -.+.+++.++.+-..+-+.-+. ++.++...+|+.+..++.+..+.+.+..-|+.|..-..-.+.
T Consensus 59 Gy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviF 138 (367)
T KOG1582|consen 59 GYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIF 138 (367)
T ss_pred HHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhhhccccCcCccccccCcHHHHH
Confidence 4444445554 443 3466777777766544444332 223556678999998888877778888889999888777788
Q ss_pred ccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhc
Q 023413 107 DCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDALVIAGATLYAVSNVSEEFLVK 186 (282)
Q Consensus 107 ~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~ 186 (282)
..+.-+-+++.+.++-++|.++....+..+...|.++....|.... +.-+..|+.+.-+|-++-|.-.-++++..+
T Consensus 139 KccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~s----PNF~~~Gv~mIsgALl~DA~iGNvQEk~m~ 214 (367)
T KOG1582|consen 139 KCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTS----PNFNLIGVMMISGALLADAVIGNVQEKAMK 214 (367)
T ss_pred HhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccC----CCcceeeHHHHHHHHHHHHHhhHHHHHHHh
Confidence 8888888999999999999999999999999999999988655422 334468999999999999998888888777
Q ss_pred cc--ChhHHHHHHHHHHHHHHHHHHHHHhhccccc------cccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 023413 187 KA--DRIELMAFLGLFGGIISAVQISILERKELQS------IHWSAGAALPFFGYALAMFLFYSFVPILLKTNGATMLNL 258 (282)
Q Consensus 187 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 258 (282)
.. +..++.++....|.+.++........ -.+. .++. ......-..++.++.........+..++.+...
T Consensus 215 ~~~~ss~EmvfySy~iG~vflf~~mvlTge-~f~a~~fcaehp~~--tyGy~~~~s~~gylG~~~VLalI~~fGA~~aat 291 (367)
T KOG1582|consen 215 MNPASSSEMVFYSYGIGFVFLFAPMVLTGE-LFSAWTFCAEHPVR--TYGYAFLFSLAGYLGIVFVLALIKLFGALIAAT 291 (367)
T ss_pred hCCCCcceEEEeeecccHHHHHHHHHhccc-chhhhHHHHhCcHh--HHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHH
Confidence 54 46778888888888887666533321 1111 1121 112211122233333334444567777777777
Q ss_pred HhHHHHHHHHHHHHHHhccccc
Q 023413 259 SLLTSDMWAVLIRIGAYHEKVC 280 (282)
Q Consensus 259 ~~~~~pi~a~l~~~~~~~E~~s 280 (282)
....+--+++++++++|.+++|
T Consensus 292 vTTaRKavTi~lSfllFsKPfT 313 (367)
T KOG1582|consen 292 VTTARKAVTILLSFLLFSKPFT 313 (367)
T ss_pred HHHhHhHHHHHHHHHHHcCchH
Confidence 7777889999999999999876
No 45
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.79 E-value=3.1e-08 Score=73.59 Aligned_cols=105 Identities=24% Similarity=0.261 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHH---HHHHHHHHHHHHHHH
Q 023413 172 TLYAVSNVSEEFLVKKADRIELMAFLGLFGGIISAVQISILERKELQSIHWSAGAALPFFGY---ALAMFLFYSFVPILL 248 (282)
Q Consensus 172 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 248 (282)
++||.+.+..|+..++.|+.....+.+..+.+ ..+.....+..+....+.+.+....+.+. ..++.++ .+..
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~a~ 75 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLY----FYAL 75 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHH----HHHH
Confidence 47899999999999999999999999999997 55555444443323333433333333332 3444444 4456
Q ss_pred HHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 249 KTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 249 ~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
++.++...+....++|+++.+++++++||++++
T Consensus 76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~ 108 (126)
T PF00892_consen 76 KYISASIVSILQYLSPVFAAILGWLFLGERPSW 108 (126)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 777777888888888999999999999999985
No 46
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.77 E-value=5.1e-08 Score=84.22 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc-cC-Ccc---------h---hHH-
Q 023413 12 TLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR-QP-LKA---------K---WYY- 76 (282)
Q Consensus 12 ~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~-~~~---------~---~~~- 76 (282)
...|.++++.++++|+......|+..+++..+|...+.+....+.+.+.|+....+ .. ... . ...
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 45699999999999999999998877533456788899999888888888765432 11 010 0 111
Q ss_pred HHHHHHHHHHH-HHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEe
Q 023413 77 YLILGLIDVEG-NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 77 ~~~~g~~~~~~-~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
....+...... +...+.+++++++..+++.....|+++.++++++++|+++..+++|..+++.|+.+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 11222211222 44566899999999999999999999999999999999999999999999999988765
No 47
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.76 E-value=2.4e-06 Score=74.10 Aligned_cols=166 Identities=13% Similarity=0.071 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHH--HHHHHHHHHHHHHHHHhhc------cCCcchhHHHHHHHH
Q 023413 11 KTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQS--FFNYVLLAIVYGSLMLYRR------QPLKAKWYYYLILGL 82 (282)
Q Consensus 11 ~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~--~~r~~~~~l~l~~~~~~~~------~~~~~~~~~~~~~g~ 82 (282)
+...|++...+.++||+..+.-.|+ .++.+...++.+ ++..++.......+.. +. ..+...+..-++.|+
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v~gi~~wl~~~~~~g~~~~-~~f~~~~~~~~~~~~~~~~l~G~ 81 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSVGGIFSWLILPWLIAALLL-PDFWAYYSSFSGSTLLPVFLFGA 81 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHhcCHHHHHHHHHHHH
Confidence 4578999999999999998888888 443322222221 1111111111111111 11 344555666677777
Q ss_pred HHHHHHHHHHHHhhccchhhHhhhccchh-HHHHHHHHHHhhccc---c----hhhhhhHHHhhhcceeeEe----ecCC
Q 023413 83 IDVEGNFLVVKAYQYTSLTSVMLLDCWTI-PCVMFLTWIFLKTKY---R----YKKITGVVVCVAGLVTVIF----SDVH 150 (282)
Q Consensus 83 ~~~~~~~~~~~al~~~~~~~~~~l~~~~p-~~~~il~~l~l~ek~---~----~~~~~g~~l~~~Gv~l~~~----~~~~ 150 (282)
+=..++..++.++++.+++.+..+..-.- +...++..++++|-. + ....+|+++.++|+.+... .|.+
T Consensus 82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~ 161 (345)
T PRK13499 82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERK 161 (345)
T ss_pred HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 77777999999999999999988865544 458888888888643 2 2346788889999999876 3332
Q ss_pred CCCC-CCCCCcchhHHHHHHHHHHHHHHH
Q 023413 151 AGDR-GSGSSPRKGDALVIAGATLYAVSN 178 (282)
Q Consensus 151 ~~~~-~~~~~~~~G~~~~l~a~~~~a~~~ 178 (282)
..++ ..+.+..+|+..++.+++.++.|+
T Consensus 162 ~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 162 MGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred cccccccccchHhHHHHHHHHHHHHHHHH
Confidence 2211 223456789999999999999999
No 48
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=5.4e-08 Score=79.62 Aligned_cols=235 Identities=11% Similarity=0.079 Sum_probs=147.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhh-c-------cCCcch---hHHHHHHHHHHHHHHHHHHHHhhccchhhHhhhccc
Q 023413 41 INAPTSQSFFNYVLLAIVYGSLMLYR-R-------QPLKAK---WYYYLILGLIDVEGNFLVVKAYQYTSLTSVMLLDCW 109 (282)
Q Consensus 41 ~~~p~~~~~~r~~~~~l~l~~~~~~~-~-------~~~~~~---~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~ 109 (282)
-..|...++.++++...+...+-... + +....| .+......+.........+++++|++++-..+-.++
T Consensus 58 Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsL 137 (347)
T KOG1442|consen 58 LDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSL 137 (347)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccch
Confidence 34689999999999887766654321 1 111112 223334444444444555699999999999999999
Q ss_pred hhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhccc-
Q 023413 110 TIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDALVIAGATLYAVSNVSEEFLVKKA- 188 (282)
Q Consensus 110 ~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~- 188 (282)
..+|+.+++++++|+|-+..-..+..+++.|-.+=+.+++. .+...+.|.+++..+.++-|+..+..||.....
T Consensus 138 ttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~-----~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~ 212 (347)
T KOG1442|consen 138 TTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGS-----TGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVG 212 (347)
T ss_pred hhhHHHHhHHhhcccccccccceeehhheehheeccccccc-----cCccchhhhHHHHHHHHHHHHHHHhhheeccccc
Confidence 99999999999999999999999999888886655543322 234557899999999999999999999755432
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHHHHhh-ccccc--cccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 023413 189 D-RIELMAFLGLFGGIISAVQISILER-KELQS--IHWSAGAALPFFGYALAMFLFYSFVPILLKTNGATMLNLSLLTSD 264 (282)
Q Consensus 189 ~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~p 264 (282)
| -...+.|-.+.+.++.+|...+... ..... ..+..+.+....-.++..+..++....=++..++..-+++..-+-
T Consensus 213 ~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka 292 (347)
T KOG1442|consen 213 DCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKA 292 (347)
T ss_pred CeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHH
Confidence 2 4567778788888877766533221 11111 112222222211111111111121111233444445555554555
Q ss_pred HHHHHHHHHHhccccc
Q 023413 265 MWAVLIRIGAYHEKVC 280 (282)
Q Consensus 265 i~a~l~~~~~~~E~~s 280 (282)
....+++..+++|.-+
T Consensus 293 ~aQTvlAv~~y~E~ks 308 (347)
T KOG1442|consen 293 AAQTVLAVAYYSETKS 308 (347)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5666777777888654
No 49
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.66 E-value=3.3e-07 Score=78.92 Aligned_cols=130 Identities=10% Similarity=0.067 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc-cCCcch---hHHHHHHHHHHHHHHHHHHH
Q 023413 18 LGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR-QPLKAK---WYYYLILGLIDVEGNFLVVK 93 (282)
Q Consensus 18 ~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~---~~~~~~~g~~~~~~~~~~~~ 93 (282)
.++.++++|+......|+..++....+...+.+-...+.....+...... .....+ +......|+.....+.++++
T Consensus 153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~ 232 (296)
T PRK15430 153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTA 232 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777766654322222233333333333332221111000 111111 22333445555455888889
Q ss_pred HhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEee
Q 023413 94 AYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFS 147 (282)
Q Consensus 94 al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~ 147 (282)
++++.+++.++++.+..|++..++++++++|++++.++.|..+++.|+.+...+
T Consensus 233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988877653
No 50
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.62 E-value=8.3e-07 Score=78.21 Aligned_cols=133 Identities=10% Similarity=0.058 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhcC-----CCchHHHHHHHHHHHHHHHHHHHHhhcc----C-------C--cch
Q 023413 12 TLLGLGLGQFLSLLITSTGFSSSELARKG-----INAPTSQSFFNYVLLAIVYGSLMLYRRQ----P-------L--KAK 73 (282)
Q Consensus 12 ~~~g~~~~~~~a~~~~~~~~~~~~l~~~~-----~~~p~~~~~~r~~~~~l~l~~~~~~~~~----~-------~--~~~ 73 (282)
+..|.++++.++++|+..++..|++.++. ..++.....+-...+.++++|+....+. . . ...
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence 46799999999999999999999988652 2345545555577788788877653220 0 0 001
Q ss_pred hHHH---H-HHHHHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceee
Q 023413 74 WYYY---L-ILGLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTV 144 (282)
Q Consensus 74 ~~~~---~-~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~ 144 (282)
+... + ..++.....+...+++++++++...++.....|+++.++++++++|+++..+++|.++++.|+++.
T Consensus 272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY 346 (350)
T PTZ00343 272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY 346 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence 1111 1 112222222444457999999999999999999999999999999999999999999999998764
No 51
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.61 E-value=3.5e-07 Score=78.44 Aligned_cols=130 Identities=12% Similarity=0.023 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHH----HHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHH
Q 023413 12 TLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYV----LLAIVYGSLMLYRRQPLKAKWYYYLILGLIDVEG 87 (282)
Q Consensus 12 ~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~----~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (282)
..+|++.+++++++++......|... .+|...++.... .+.++..++ .+.++...++.+..++.|++....
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Gi~~~ia 224 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAFG----VDGLSVLLPQAIGMVIGGIIFNLGH-ILAKPLKKYAILLNILPGLMWGIG 224 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcC----CCcceehhHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999888888753 456666544443 333333333 111222233444455678775444
Q ss_pred HHHHHHHhh-ccchhhHhhhccchhHHHHHHHHHHhhcccchhhh----hhHHHhhhcceeeEe
Q 023413 88 NFLVVKAYQ-YTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKI----TGVVVCVAGLVTVIF 146 (282)
Q Consensus 88 ~~~~~~al~-~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~----~g~~l~~~Gv~l~~~ 146 (282)
+.+++.+.+ +.+++.++++.+..|+...+.+.+++||+.+++|+ +|.++.+.|+.+...
T Consensus 225 ~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 225 NFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 777889999 99999999999999999999999999999999999 999999999887643
No 52
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.57 E-value=1.5e-06 Score=74.09 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHH-HHHHHHHHHHHHHHHhhc--cCCcchhHHHHHHHHHHHHH-
Q 023413 12 TLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSF-FNYVLLAIVYGSLMLYRR--QPLKAKWYYYLILGLIDVEG- 87 (282)
Q Consensus 12 ~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~-~r~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~~- 87 (282)
...|..+++.++++|+......++.. + .++..... +..........+...... +....++......|+++...
T Consensus 152 ~~~g~~~~l~a~~~~a~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 228 (292)
T COG0697 152 SLLGLLLALAAALLWALYTALVKRLS-R--LGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLA 228 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-C--CChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999898888876 2 22334444 333322222222222221 23345666777888887754
Q ss_pred HHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEe
Q 023413 88 NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 88 ~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
+.+.+++++..+++.++.+.++.|++..++++++++|+++.++++|..+.+.|+.+...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999999999999999999999988765
No 53
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.57 E-value=2.2e-06 Score=66.21 Aligned_cols=119 Identities=19% Similarity=0.189 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc-------cChhHHHHHHHHHHHHHHHHHHHHHhhcccccccc---------ccch
Q 023413 163 GDALVIAGATLYAVSNVSEEFLVKK-------ADRIELMAFLGLFGGIISAVQISILERKELQSIHW---------SAGA 226 (282)
Q Consensus 163 G~~~~l~a~~~~a~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 226 (282)
|..+++.+.++.|++.+..|+..++ .|+.+...+....+.+.+.+.....|..+...... +...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999987655 45889999999999999988877777654221111 1122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 227 ALPFFGYALAMFLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
...+...+...+.++.......+..++...++....+.+..++.|++++||++|+
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~ 135 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITP 135 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCH
Confidence 2333334566677788888899999999999999999999999999999999885
No 54
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.56 E-value=1.8e-07 Score=68.17 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=58.2
Q ss_pred HHHHHHHH-HHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeE
Q 023413 80 LGLIDVEG-NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVI 145 (282)
Q Consensus 80 ~g~~~~~~-~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~ 145 (282)
.+.++... .++...+++..|.+.+..+.++.|+++.+++++++|||++++|++|+.+++.|++++.
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 33354555 6666799999999999999999999999999999999999999999999999998764
No 55
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.55 E-value=1.6e-06 Score=74.35 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHH-HH
Q 023413 10 KKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQPLKAKWYYYLILGLIDVE-GN 88 (282)
Q Consensus 10 ~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~ 88 (282)
++...|+.+++.++++-+......|+-.++....+. |-- .++++..++..| ..|..... +.
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~-----~~~-----------~~~~~~l~~~~W--~~G~~~~~~g~ 64 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSL-----RAG-----------SGGRSYLRRPLW--WIGLLLMVLGE 64 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----ccc-----------chhhHHHhhHHH--HHHHHHHhcch
Confidence 456789999999888888777777666554211110 000 000111122223 33433333 37
Q ss_pred HHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCC
Q 023413 89 FLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVH 150 (282)
Q Consensus 89 ~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~ 150 (282)
.+.+.|+.+.|.+..+++....-++..+++..++|||++++++.|..+++.|..++...+++
T Consensus 65 ~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~ 126 (300)
T PF05653_consen 65 ILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPK 126 (300)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCC
Confidence 77789999999999999999999999999999999999999999999999999988764443
No 56
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.50 E-value=1.9e-06 Score=62.60 Aligned_cols=115 Identities=16% Similarity=0.054 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHHHHhhccc-cccccccchhHHHHH--HHHHHHH
Q 023413 163 GDALVIAGATLYAVSNVSEEFLVKKADRIELMAFLGLFGGIISAVQISILERKEL-QSIHWSAGAALPFFG--YALAMFL 239 (282)
Q Consensus 163 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~ 239 (282)
...+++++++++++..+..|-..++.||...+..........+..+.......+. ..++...+..+.+.| .+.+..+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~ 83 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLL 83 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHH
Confidence 5789999999999999999999999999999998888887777655433322211 123444555555555 3555555
Q ss_pred HHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 240 FYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 240 ~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
|+.+ .+..+++.+....-++|+++++++++++||++|.
T Consensus 84 Yf~A----Lk~G~as~VvPldk~svvl~~lls~lfL~E~ls~ 121 (140)
T COG2510 84 YFRA----LKKGKASRVVPLDKTSVVLAVLLSILFLGERLSL 121 (140)
T ss_pred HHHH----HhcCCcceEEEcccccHHHHHHHHHHHhcCCCCH
Confidence 5554 4444444444444555999999999999999984
No 57
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.43 E-value=7.6e-06 Score=67.45 Aligned_cols=172 Identities=11% Similarity=0.044 Sum_probs=89.4
Q ss_pred hhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcc--------------------eeeEeecCCCCCCCCCCCcchh
Q 023413 104 MLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGL--------------------VTVIFSDVHAGDRGSGSSPRKG 163 (282)
Q Consensus 104 ~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv--------------------~l~~~~~~~~~~~~~~~~~~~G 163 (282)
....+..++++++.++...+||.++.|+++.++...|+ .....++..+ ......+...|
T Consensus 8 ~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~-~~~~~g~~~~g 86 (222)
T TIGR00803 8 IIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSA-KTLMFGNPVVG 86 (222)
T ss_pred HHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCc-cccccccHHHH
Confidence 34444555555555555555555555555555544444 4443211110 01112244678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChh-HHHHHHH-HHHHHHHHHHHHHHhh-cccccc----ccccchhHHHHHHHHH
Q 023413 164 DALVIAGATLYAVSNVSEEFLVKKADRI-ELMAFLG-LFGGIISAVQISILER-KELQSI----HWSAGAALPFFGYALA 236 (282)
Q Consensus 164 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~ 236 (282)
....+.+.++-+...+..++..|+.+.. .....+. ..+.+..... ...+. ....+. .++...+...+.....
T Consensus 87 ~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 165 (222)
T TIGR00803 87 LSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSV-LLWSDGTLISNFGFFIGYPTAVWIVGLLNVGG 165 (222)
T ss_pred HHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHH-HhhcccchhhccCcccCCchHHHHHHHHHHhc
Confidence 8888888888889999999876654422 1111111 1222211111 11111 111111 1112222221111222
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 237 MFLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 237 ~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
........++.++...+....++++++.+++.++|||+++.
T Consensus 166 ----~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~ 206 (222)
T TIGR00803 166 ----GLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISS 206 (222)
T ss_pred ----CceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence 23345577888888999999999999999999999999874
No 58
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.42 E-value=8.3e-06 Score=68.72 Aligned_cols=117 Identities=10% Similarity=0.146 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHHHHhhc-----cccccccccch-hHHHHHHHH
Q 023413 162 KGDALVIAGATLYAVSNVSEEFLVKKADRIELMAFLGLFGGIISAVQISILERK-----ELQSIHWSAGA-ALPFFGYAL 235 (282)
Q Consensus 162 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~ 235 (282)
+|..+.++++++|+...+..|. ..+.||.+..++.+..+.+.+.+........ .....+.+.+. .....+..
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~- 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL- 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH-
Confidence 5899999999999999999997 5679999999999999988775554332211 01111111111 12222221
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 236 AMFLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 236 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
...++.......++.++...+...++.|+++.+++.+++||++++
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~ 124 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISR 124 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 222233334455666666666777777999999999999999985
No 59
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.34 E-value=3.6e-08 Score=79.49 Aligned_cols=254 Identities=13% Similarity=0.071 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc-cCCcchhHHHHHHHHHHHHHHHHHH
Q 023413 14 LGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR-QPLKAKWYYYLILGLIDVEGNFLVV 92 (282)
Q Consensus 14 ~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~ 92 (282)
.+++.+++-++.|++...+..+.. ..|.+.+.---+-+.++...+.+... ....+.+..-++.|++=..++...+
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~G----G~p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qf 77 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKFG----GKPYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQF 77 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeecC----CChhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhh
Confidence 356778899999999888777654 23555555444444433333333332 2233334344455555445577788
Q ss_pred HHhhccchhhHhhhccchhHH-HHHHHHHHhhcccchhhh----hhHHHhhhcceeeEeecCCCCCCCCCCCcchhHHHH
Q 023413 93 KAYQYTSLTSVMLLDCWTIPC-VMFLTWIFLKTKYRYKKI----TGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDALV 167 (282)
Q Consensus 93 ~al~~~~~~~~~~l~~~~p~~-~~il~~l~l~ek~~~~~~----~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~ 167 (282)
.|+++.+++.+.++..-.-+. +.+++.+.++|-.+..|. +++++.+.|+++....|+++.+.++..+..+|....
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L 157 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVIL 157 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeee
Confidence 999999999999998888777 888899999998887775 477788999999998776544444455567899999
Q ss_pred HHHHHHHHHHHHHHHHhh-cccChhHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 023413 168 IAGATLYAVSNVSEEFLV-KKADRIELMAFLGLFGGIISAVQISILERKELQSIHWSAGAALPFFGYALAMFLFYSFVPI 246 (282)
Q Consensus 168 l~a~~~~a~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (282)
+.+.+.|-.|.+..+... +..|..--.+..+..+++.+... .+........|.+......- +.+...+..+...
T Consensus 158 ~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~~---~~~~~~~K~t~~nii~G~~W--a~GNl~ml~a~~~ 232 (288)
T COG4975 158 LISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGFF---KMEKRFNKYTWLNIIPGLIW--AIGNLFMLLAAQK 232 (288)
T ss_pred eeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhhc---ccccchHHHHHHHHhhHHHH--HhhHHHHHHhhhh
Confidence 999999999999887432 22334444445555555443211 11111112222222222211 2233333333333
Q ss_pred HHHHhhHHHHHHHhHHHHHHHHHHHHHHhccccc
Q 023413 247 LLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVC 280 (282)
Q Consensus 247 ~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s 280 (282)
.+...+=+..++. .+.+.+-|.++++|+=|
T Consensus 233 ~GvAt~FSlSQlg----ViisTiGGIl~L~ekKt 262 (288)
T COG4975 233 VGVATSFSLSQLG----VIISTIGGILFLGEKKT 262 (288)
T ss_pred hceeeeeeHhhhe----eeeeecceEEEEeccCc
Confidence 3333333333444 67788888899988744
No 60
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.21 E-value=3.1e-05 Score=57.82 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=60.9
Q ss_pred HHHHHHHHHHH-HHHHHHHhhccchhhHhhhccchhHHHHHHHHH--HhhcccchhhhhhHHHhhhcceeeEee
Q 023413 77 YLILGLIDVEG-NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWI--FLKTKYRYKKITGVVVCVAGLVTVIFS 147 (282)
Q Consensus 77 ~~~~g~~~~~~-~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l--~l~ek~~~~~~~g~~l~~~Gv~l~~~~ 147 (282)
++..|+..... ..+..++++..+++.+..+.+..+..+.+.++. ++||++|++|++|+.+++.|++++..+
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 45666666666 666779999999999999999998888888885 899999999999999999999998763
No 61
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.14 E-value=4.2e-05 Score=62.34 Aligned_cols=129 Identities=11% Similarity=-0.005 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhccCCcch---hHHHHHHHHHHHHH-HH
Q 023413 14 LGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQPLKAK---WYYYLILGLIDVEG-NF 89 (282)
Q Consensus 14 ~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~---~~~~~~~g~~~~~~-~~ 89 (282)
.|..+++..+.||+..-+..++..+ ..+.-.-+..-+.++.++.+|+-.-...+...+ ...-+..++++... +.
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~--~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYs 225 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGR--AEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYS 225 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhcc--cCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchH
Confidence 5888899999999988888888775 233456777888999999888765443222222 22335667777777 55
Q ss_pred HHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceee
Q 023413 90 LVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTV 144 (282)
Q Consensus 90 ~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~ 144 (282)
+-..+++..+....+++.++.|.+..+.++++++|++|..||.++..++.+..=.
T Consensus 226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 6679999999999999999999999999999999999999999999988876633
No 62
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.06 E-value=6.7e-05 Score=64.88 Aligned_cols=133 Identities=18% Similarity=0.215 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHh--hc---------cCCcchhHHHHHHHH
Q 023413 14 LGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLY--RR---------QPLKAKWYYYLILGL 82 (282)
Q Consensus 14 ~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~--~~---------~~~~~~~~~~~~~g~ 82 (282)
.|+++..+..++-+..+..-+++.++...++.+..++-...+.+...+.... .+ ...+..+...+..++
T Consensus 154 ~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 154 LGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 3999999999999999999999998877788999999988888888776655 22 112233445567777
Q ss_pred HHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEe
Q 023413 83 IDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 83 ~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
++..+..+.+.-.+..++...+++..+--+++.+++.+++++++++.+|.|+.+.+.|..+-..
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 7777777777778999999999999999999999999999999999999999999999887654
No 63
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00011 Score=61.99 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHH-H
Q 023413 10 KKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQPLKAKWYYYLILGLIDVEG-N 88 (282)
Q Consensus 10 ~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~ 88 (282)
+++.+|.+++..+++.-+.+-..-|+-.++- .....|.--+ +.+..+. +....|.+.... .
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~-----~~~~~ra~~g-----------g~~yl~~--~~Ww~G~ltm~vGe 78 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRA-----GASGLRAGEG-----------GYGYLKE--PLWWAGMLTMIVGE 78 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHH-----hhhcccccCC-----------Ccchhhh--HHHHHHHHHHHHHh
Confidence 3456788888888877776666665544320 0011111000 0111122 223446655555 8
Q ss_pred HHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCCC
Q 023413 89 FLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVHA 151 (282)
Q Consensus 89 ~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~~ 151 (282)
...+-|+.+.|.+..+++-.++.+...+++..++|||+++...+|.+++++|-.+++...++.
T Consensus 79 i~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e 141 (335)
T KOG2922|consen 79 IANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE 141 (335)
T ss_pred HhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence 888999999999999999999999999999999999999999999999999999998866553
No 64
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.95 E-value=0.00026 Score=61.53 Aligned_cols=139 Identities=14% Similarity=0.053 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHh--hc-----cCCcchhHHHHHHH
Q 023413 9 TKKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLY--RR-----QPLKAKWYYYLILG 81 (282)
Q Consensus 9 ~~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~--~~-----~~~~~~~~~~~~~g 81 (282)
.++..+|=++++.++.+.+.+++.-+++.++ .++.....+=-+.+.++..+.+.. ++ +.+.+....++..+
T Consensus 163 ~~~~i~GDll~l~~a~lya~~nV~~E~~v~~--~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~ 240 (334)
T PF06027_consen 163 GSNPILGDLLALLGAILYAVSNVLEEKLVKK--APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYA 240 (334)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHH
Confidence 3467899999999999999999999998864 345555555555555555554332 11 11222222222223
Q ss_pred HHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecC
Q 023413 82 LIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDV 149 (282)
Q Consensus 82 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~ 149 (282)
++.+..+.+.-..+++.++....+=..++.++.++.+.+++++++++..++|.++++.|.++....+.
T Consensus 241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 32222233444778888888888777889999999999999999999999999999999999976443
No 65
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.81 E-value=0.00034 Score=58.59 Aligned_cols=128 Identities=14% Similarity=0.117 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHH-HHHHh-hccCCcchhHHHHHHHHHHHHH
Q 023413 10 KKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYG-SLMLY-RRQPLKAKWYYYLILGLIDVEG 87 (282)
Q Consensus 10 ~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~-~~~~~-~~~~~~~~~~~~~~~g~~~~~~ 87 (282)
++..+|+...+.+++-+.....+-+.. +.+|....+=+ .++.++-. .+... +++...++.++-++.|++-..+
T Consensus 134 ~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPq-aiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ig 208 (269)
T PF06800_consen 134 SNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQ-AIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIG 208 (269)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHH-HHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHH
Confidence 455778888888888887766666653 34555544433 22222222 22221 2222333344446778877777
Q ss_pred HHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhh----hHHHhhhcce
Q 023413 88 NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKIT----GVVVCVAGLV 142 (282)
Q Consensus 88 ~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~----g~~l~~~Gv~ 142 (282)
+.+++.|.+..+.+.+-.+.++.+++..+.+.+++|||-+++++. |+++.+.|.+
T Consensus 209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999988764 5555555544
No 66
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.63 E-value=0.00024 Score=52.18 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=56.8
Q ss_pred HHHHHHH-HHHHHHHhhccchhhHhhhc-cchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeec
Q 023413 81 GLIDVEG-NFLVVKAYQYTSLTSVMLLD-CWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSD 148 (282)
Q Consensus 81 g~~~~~~-~~~~~~al~~~~~~~~~~l~-~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~ 148 (282)
.+..... .+++..++++.|.+.+..+. ....+.+.+++.+++||++++.|++|+.+.+.|++.+-..+
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3333444 66777999999999999886 47778899999999999999999999999999998886533
No 67
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.54 E-value=0.00053 Score=49.57 Aligned_cols=109 Identities=12% Similarity=0.103 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHhhccch
Q 023413 21 FLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQPLKAKWYYYLILGLIDVEGNFLVVKAYQYTSL 100 (282)
Q Consensus 21 ~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~ 100 (282)
+.+++|+.++.+.|.-++..+...-. . |..--... ...+|++.+ -=+++..+...+++.+...+.
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~--~~~~~~~~-----------Ll~n~~y~i-pf~lNq~GSv~f~~~L~~~dl 67 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKAS-L--QLLQEIKF-----------LLLNPKYII-PFLLNQSGSVLFFLLLGSADL 67 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccch-H--HHHHHHHH-----------HHHhHHHHH-HHHHHHHHHHHHHHHHhcCCc
Confidence 46789999999999988763222211 1 21111111 123343333 223455668889999999999
Q ss_pred hhHhhhc-cchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceee
Q 023413 101 TSVMLLD-CWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTV 144 (282)
Q Consensus 101 ~~~~~l~-~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~ 144 (282)
+.+.++. ++.=++|.+.++++.+|..++++++|+.+++.|+.+.
T Consensus 68 SlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 68 SLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred eeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 9999995 6666779999988777888999999999999999875
No 68
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.54 E-value=0.0003 Score=50.95 Aligned_cols=66 Identities=17% Similarity=0.310 Sum_probs=55.2
Q ss_pred HHHHHHH-HHHHHHHhhccchhhHhhhcc-chhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEe
Q 023413 81 GLIDVEG-NFLVVKAYQYTSLTSVMLLDC-WTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 81 g~~~~~~-~~~~~~al~~~~~~~~~~l~~-~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
.+..... .+++..+++..|.+.+..+.. .....+.+.+++++||++++.|++|+.+.+.|++.+-.
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3344444 556679999999999988854 56777999999999999999999999999999999855
No 69
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.52 E-value=0.0003 Score=50.75 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=50.3
Q ss_pred HHHHHHHHhhccchhhHhhhccc-hhHHHHHHHHHHhhcccchhhhhhHHHhhhcceee
Q 023413 87 GNFLVVKAYQYTSLTSVMLLDCW-TIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTV 144 (282)
Q Consensus 87 ~~~~~~~al~~~~~~~~~~l~~~-~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~ 144 (282)
..+++..++++.|.+.+-.+..- ....+.+.+.+++||++++.|++++.+.+.|+..+
T Consensus 48 sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 48 AFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 36677799999999998887764 44568999999999999999999999999999875
No 70
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.49 E-value=0.00043 Score=49.61 Aligned_cols=59 Identities=10% Similarity=0.074 Sum_probs=51.5
Q ss_pred HHHHHHHhhccchhhHhhhcc-chhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEe
Q 023413 88 NFLVVKAYQYTSLTSVMLLDC-WTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 88 ~~~~~~al~~~~~~~~~~l~~-~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
.+++..+++..|.+.+-.+.. .....+.+.+.+++||++++.|++++.+.+.|++.+-.
T Consensus 43 f~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 43 MALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 667779999999999888777 45566999999999999999999999999999988743
No 71
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.00029 Score=50.09 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=51.2
Q ss_pred HHHHHHHhhccchhhHhhhccchhHH-HHHHHHHHhhcccchhhhhhHHHhhhcceeeEe
Q 023413 88 NFLVVKAYQYTSLTSVMLLDCWTIPC-VMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 88 ~~~~~~al~~~~~~~~~~l~~~~p~~-~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
..++-.|+++.|.+.+..+-.-.-.. +.+.+++++||+.+..+++++.+.+.|++.+-.
T Consensus 44 f~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 44 FYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 66777999999999988776665544 899999999999999999999999999987744
No 72
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.47 E-value=6.5e-05 Score=61.77 Aligned_cols=132 Identities=13% Similarity=0.087 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHh----hccCCcchhHHHHHHHHHHHHHH
Q 023413 13 LLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLY----RRQPLKAKWYYYLILGLIDVEGN 88 (282)
Q Consensus 13 ~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~ 88 (282)
..|...++.+++..+...++.+++.|+.+. ...+.+-..++.+...+.+.. ..+...+||+...-+|++++.++
T Consensus 190 ~~gt~aai~s~lf~asvyIilR~iGk~~h~--~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQ 267 (346)
T KOG4510|consen 190 IPGTVAAISSVLFGASVYIILRYIGKNAHA--IMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQ 267 (346)
T ss_pred CCchHHHHHhHhhhhhHHHHHHHhhccccE--EEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHH
Confidence 345566666666677779999999876321 222233333333333332221 12667888888888999999999
Q ss_pred HHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEe
Q 023413 89 FLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 89 ~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
.+...|+|.-.++-+++..++..++..+...++++|-+|++.|.|.++.+...+.+..
T Consensus 268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVAL 325 (346)
T ss_pred HHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHH
Confidence 9999999999999999999999999999999999999999999998877766555543
No 73
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.42 E-value=0.0022 Score=53.70 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=79.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHHHHhh-ccccccccccchhHHHHHHHHHHHH
Q 023413 161 RKGDALVIAGATLYAVSNVSEEFLVKKADRIELMAFLGLFGGIISAVQISILER-KELQSIHWSAGAALPFFGYALAMFL 239 (282)
Q Consensus 161 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (282)
..|+++++.+-+.|+.-..+.| ..+..++.++..+....+...+......... ++..+.-.+++....+...+.-...
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~k-ll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~ 84 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFK-LLEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGL 84 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHH-HHccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 4799999999999999999999 5688899999999999988887655444322 2222211222222222211111111
Q ss_pred HHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 240 FYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 240 ~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
-+....+..++..+.-.++-.+..|++.+++|.+++||++|.
T Consensus 85 nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~ 126 (293)
T COG2962 85 NWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR 126 (293)
T ss_pred HHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH
Confidence 112223355666666677777778999999999999999985
No 74
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.36 E-value=0.00039 Score=59.77 Aligned_cols=136 Identities=11% Similarity=0.112 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHhhh--cCCCchHHHHHHHHHHHHHHHH-HHHHhhcc--C-------CcchhHHHH
Q 023413 11 KTLLGLGLGQFLSLLITSTGFSSSELAR--KGINAPTSQSFFNYVLLAIVYG-SLMLYRRQ--P-------LKAKWYYYL 78 (282)
Q Consensus 11 ~~~~g~~~~~~~a~~~~~~~~~~~~l~~--~~~~~p~~~~~~r~~~~~l~l~-~~~~~~~~--~-------~~~~~~~~~ 78 (282)
-++.|+..+..+.+..+..+++.+.+.+ +...+++....+-...+...++ |+....+. . ..-+.....
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILL 239 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHH
Confidence 4678999999999999999999999995 3456778888887788888888 77665431 1 111222334
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEe
Q 023413 79 ILGLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 79 ~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
..+++....|...+..+..+++-..++.....-.++...++++++|+.++.+..|..+++.|+++-..
T Consensus 240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 44566666688889999999999999999999999999999999999999999999999999987643
No 75
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.34 E-value=0.0049 Score=46.66 Aligned_cols=126 Identities=15% Similarity=0.214 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhcc-----CCcchhHHHHHHHHHHHHHHHH
Q 023413 16 LGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQ-----PLKAKWYYYLILGLIDVEGNFL 90 (282)
Q Consensus 16 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~ 90 (282)
+++++....+-+....+-..+.++ ..+|...++..+..+.+....+....++ ....+|+. ..-|.++...-.+
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~-~lGG~lG~~~V~~ 80 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWA-YLGGLLGVFFVLS 80 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHH-hccHHHHHHHHHH
Confidence 355666677777777777777764 2258999999999999888877765442 11233433 3467777776777
Q ss_pred HHHHhhccchhhHhhhccchhHH-HHHHHHH----HhhcccchhhhhhHHHhhhccee
Q 023413 91 VVKAYQYTSLTSVMLLDCWTIPC-VMFLTWI----FLKTKYRYKKITGVVVCVAGLVT 143 (282)
Q Consensus 91 ~~~al~~~~~~~~~~l~~~~p~~-~~il~~l----~l~ek~~~~~~~g~~l~~~Gv~l 143 (282)
...+....+++.+..+.-..-++ ..++..+ .-|+|++++|.+|+.+.+.|+.+
T Consensus 81 ~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 81 NIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 78999999998888877666665 5555553 34678999999999999999864
No 76
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.30 E-value=0.0031 Score=51.87 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhccee
Q 023413 79 ILGLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVT 143 (282)
Q Consensus 79 ~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l 143 (282)
...+.+.....+....++|.+....+....+.++++.+++.++++|+++..++.|..+.+.|+.+
T Consensus 157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 33444444466677999999999999999999999999999999999999999999999999764
No 77
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.01 E-value=0.002 Score=45.27 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=29.0
Q ss_pred HHHHHHHhhccchhhHhhhcc-chhHHHHHHHHHHhhcccchhhhhhHHHh
Q 023413 88 NFLVVKAYQYTSLTSVMLLDC-WTIPCVMFLTWIFLKTKYRYKKITGVVVC 137 (282)
Q Consensus 88 ~~~~~~al~~~~~~~~~~l~~-~~p~~~~il~~l~l~ek~~~~~~~g~~l~ 137 (282)
.+++..++++.|.+.+-.+.. ...+.+.+.+..++||++|+.|+.|+.++
T Consensus 43 ~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 43 FYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 566679999999999977754 78888999999999999999999998763
No 78
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.0055 Score=51.61 Aligned_cols=137 Identities=13% Similarity=0.124 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc---------cCCcchhHHHHHH
Q 023413 10 KKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR---------QPLKAKWYYYLIL 80 (282)
Q Consensus 10 ~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~---------~~~~~~~~~~~~~ 80 (282)
.+...|+.++...-+.=++++..-..+.++-..++....+.-.+...+.-...+...+ +..++-++..++.
T Consensus 168 ~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~ 247 (327)
T KOG1581|consen 168 ENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLY 247 (327)
T ss_pred CCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHH
Confidence 3557888887777777788888888888775567788777766666666555554433 2334556677888
Q ss_pred HHHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEe
Q 023413 81 GLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 81 g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
+.++..++.+.++-++.-++-.-+.+..+=-+++++++.+.++.++++.||.|+.+.+.|..+=..
T Consensus 248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEIL 313 (327)
T ss_pred HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHH
Confidence 999999988888788877777777777888899999999999999999999999999988876543
No 79
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.43 E-value=0.025 Score=45.98 Aligned_cols=132 Identities=11% Similarity=0.146 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc---------cCCcchhHHHHHHHHHHHHH
Q 023413 17 GLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR---------QPLKAKWYYYLILGLIDVEG 87 (282)
Q Consensus 17 ~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~ 87 (282)
++.+++--.=+.++.+-..+............+.-.+.+.+.+..-+.+.+ .+.+..|+.+.++++.+..+
T Consensus 175 lLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s~LG 254 (337)
T KOG1580|consen 175 LLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIASCLG 254 (337)
T ss_pred HHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHHHhh
Confidence 333333333344455544444332222344555555555555554443322 34456777888999999999
Q ss_pred HHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeec
Q 023413 88 NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSD 148 (282)
Q Consensus 88 ~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~ 148 (282)
+++.+.-..+-++-.-+++..+--.|+.+.+.++++..++.+||+|..+.+.|...=..++
T Consensus 255 Q~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~G 315 (337)
T KOG1580|consen 255 QWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDG 315 (337)
T ss_pred hHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcC
Confidence 9999988888888888888889999999999999999999999999999999877655433
No 80
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.35 E-value=0.055 Score=47.09 Aligned_cols=140 Identities=21% Similarity=0.169 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHhhhc-CCCchHHHHHH-HHHHHHHHHHHHHH----hhc----cCCcchhHHHHHH
Q 023413 11 KTLLGLGLGQFLSLLITSTGFSSSELARK-GINAPTSQSFF-NYVLLAIVYGSLML----YRR----QPLKAKWYYYLIL 80 (282)
Q Consensus 11 ~~~~g~~~~~~~a~~~~~~~~~~~~l~~~-~~~~p~~~~~~-r~~~~~l~l~~~~~----~~~----~~~~~~~~~~~~~ 80 (282)
+...|-++++++|++.+......|+-..+ |........+. =-++..+++.|.++ .+. -|...+....+..
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 56789999999999999877777665544 22222222221 12222233332222 221 2223334445677
Q ss_pred HHHHHHH-HHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCC
Q 023413 81 GLIDVEG-NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVH 150 (282)
Q Consensus 81 g~~~~~~-~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~ 150 (282)
++++... .++...|.-.+++-.+++-...+.+..++.-.++-++++++..++|...+++|-+.+...+..
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 7887777 999999999999999999999999999999999889999999999999999999998775443
No 81
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.34 E-value=0.08 Score=44.22 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc--cCC----cchhHHHHHHHH-
Q 023413 10 KKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR--QPL----KAKWYYYLILGL- 82 (282)
Q Consensus 10 ~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~--~~~----~~~~~~~~~~g~- 82 (282)
.+...|+...+..+++-++.++...++.|++..+.+.....=+..+.++.++....++ +.. .+.+-.....-+
T Consensus 110 ~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~ 189 (244)
T PF04142_consen 110 QNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIF 189 (244)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHH
Confidence 4567899999999999999999999999886665555555556666655555543332 111 112222222222
Q ss_pred HHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHH
Q 023413 83 IDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVV 136 (282)
Q Consensus 83 ~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l 136 (282)
....+..+.-.-++|.+...=......+.+++.+++..+++.+++....+|..+
T Consensus 190 ~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 190 LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 233334455588999998888888889999999999999999999988887653
No 82
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=96.02 E-value=0.18 Score=36.54 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 240 FYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 240 ~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
.+..+....++.+.........+.++.+.++|+++|||++|+
T Consensus 50 ~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~ 91 (111)
T PRK15051 50 AMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSP 91 (111)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 334445566777777777776788999999999999999986
No 83
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=95.99 E-value=0.16 Score=37.94 Aligned_cols=101 Identities=18% Similarity=0.062 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHH
Q 023413 162 KGDALVIAGATLYAVSNVSEEFLVKKADRIELMAFLGLFGGIISAVQISILERKELQSIHWSAGAALPFFGYALAMFLFY 241 (282)
Q Consensus 162 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (282)
.|.++.+.+.++-+.+++.-|+..++.+..+.... . . ..... .. + ...+....+.+.++++..|.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~----~-~~~~~-~~--~------p~~~i~lgl~~~~la~~~w~ 66 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-F----I-AALLA-FG--L------ALRAVLLGLAGYALSMLCWL 66 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-H----H-HHHHH-Hh--c------cHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999998877654332221 0 0 00000 00 0 00123333444566666665
Q ss_pred HHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHH--HhcccccC
Q 023413 242 SFVPILLKTNGATMLNLSLLTSDMWAVLIRIG--AYHEKVCK 281 (282)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~--~~~E~~s~ 281 (282)
.. .+..+...........++...+.++. ++||++|+
T Consensus 67 ~a----L~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~ 104 (129)
T PRK02971 67 KA----LRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSL 104 (129)
T ss_pred HH----HHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 54 45555555554444457777777774 79999986
No 84
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=95.80 E-value=0.13 Score=37.37 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 235 LAMFLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
..+..++.+ .++.++ .......+.|+++.+++.+++||+++.
T Consensus 47 ~~~~~~~~a----~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~ 88 (113)
T PF13536_consen 47 VAYLLFFYA----LSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSP 88 (113)
T ss_pred HHHHHHHHH----HHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 444444444 444443 444555667999999999999999875
No 85
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.51 E-value=0.3 Score=42.78 Aligned_cols=137 Identities=13% Similarity=0.045 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh-------hhhHHhhhcCCCchHHHHHHHHH---HHHHHHH-HHHH---hhccC----
Q 023413 8 WTKKTLLGLGLGQFLSLLITSTG-------FSSSELARKGINAPTSQSFFNYV---LLAIVYG-SLML---YRRQP---- 69 (282)
Q Consensus 8 ~~~~~~~g~~~~~~~a~~~~~~~-------~~~~~l~~~~~~~p~~~~~~r~~---~~~l~l~-~~~~---~~~~~---- 69 (282)
++++..||++.++++.+..++.+ ..-+.....+.. |.....-.+. .+..+.- .++. .|+++
T Consensus 168 ~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~-~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~ 246 (345)
T PRK13499 168 EEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVD-PLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLK 246 (345)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccc
Confidence 34566899999998888877766 322222222433 3333333333 4443333 2222 12111
Q ss_pred -Ccc----hhHHH----HHHHHHHHHHHHHHHHHhhccchhhHhh---hc-cchhHHHHHHHHHHhhcccc------hhh
Q 023413 70 -LKA----KWYYY----LILGLIDVEGNFLVVKAYQYTSLTSVML---LD-CWTIPCVMFLTWIFLKTKYR------YKK 130 (282)
Q Consensus 70 -~~~----~~~~~----~~~g~~~~~~~~~~~~al~~~~~~~~~~---l~-~~~p~~~~il~~l~l~ek~~------~~~ 130 (282)
+++ ++.+- .+-|++=...+.++..|-+..+...+.. +. ++..++..+.+. ++||+-+ +.-
T Consensus 247 ~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l 325 (345)
T PRK13499 247 ADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVL 325 (345)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHH
Confidence 111 11222 3334443344666667777775554444 55 555577777777 5999877 444
Q ss_pred hhhHHHhhhcceeeEe
Q 023413 131 ITGVVVCVAGLVTVIF 146 (282)
Q Consensus 131 ~~g~~l~~~Gv~l~~~ 146 (282)
++|+++.+.|..++..
T Consensus 326 ~~G~vliI~g~~lig~ 341 (345)
T PRK13499 326 SLGCVVIILAANIVGL 341 (345)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7788888888877754
No 86
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.27 E-value=0.38 Score=36.70 Aligned_cols=130 Identities=17% Similarity=0.244 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc-cC-----CcchhHHHHHHHHHHHH
Q 023413 13 LLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR-QP-----LKAKWYYYLILGLIDVE 86 (282)
Q Consensus 13 ~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~-----~~~~~~~~~~~g~~~~~ 86 (282)
...++.++....+-...+.+-..+++. ..+|....+..+.++++.+..+.+.++ ++ .+.+|+. ..-|.++..
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~-~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~-~~GG~lGa~ 81 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARY-LGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWA-WIGGLLGAI 81 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHH-HHccchhhh
Confidence 455677777888888888888888874 346889999999999888887766543 11 1223433 333444444
Q ss_pred HHHHHHHHhhccchhhHhhhc-cchhHHHHHHHHHHh----hcccchhhhhhHHHhhhcceee
Q 023413 87 GNFLVVKAYQYTSLTSVMLLD-CWTIPCVMFLTWIFL----KTKYRYKKITGVVVCVAGLVTV 144 (282)
Q Consensus 87 ~~~~~~~al~~~~~~~~~~l~-~~~p~~~~il~~l~l----~ek~~~~~~~g~~l~~~Gv~l~ 144 (282)
.-..........+++....+. .-+-+..+++..+=. +++++..+++|+++.++|+++.
T Consensus 82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 333333555555555444433 333333444433211 3679999999999999995444
No 87
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=94.77 E-value=1.3 Score=33.44 Aligned_cols=53 Identities=17% Similarity=0.004 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccC-hhHHHHHHHHHHHHHHHHHHHHHhhc
Q 023413 163 GDALVIAGATLYAVSNVSEEFLVKKAD-RIELMAFLGLFGGIISAVQISILERK 215 (282)
Q Consensus 163 G~~~~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (282)
..++++.++.+-++....+.++.++.+ |.......+..+.+.+.+.....+..
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~ 55 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP 55 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 357889999999999999999888765 99999999999999887776555543
No 88
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=0.057 Score=45.03 Aligned_cols=131 Identities=13% Similarity=0.128 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc--------cCC--cchhHHHHHHH
Q 023413 12 TLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR--------QPL--KAKWYYYLILG 81 (282)
Q Consensus 12 ~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~--------~~~--~~~~~~~~~~g 81 (282)
.+.|.++|.+++++-+.-.+..|+..-.-...-+.++++....+.++++|.+...+ +.. ..-|..+.+.|
T Consensus 183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG 262 (347)
T ss_pred chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence 47899999999999998888887655432233577889999999999999887644 111 12233344556
Q ss_pred HHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcce
Q 023413 82 LIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLV 142 (282)
Q Consensus 82 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~ 142 (282)
++++..++.-..=++.+++-.-.+=-.-....-.+++..+++|..+-..|-+-.+.+.|..
T Consensus 263 lfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~ 323 (347)
T KOG1442|consen 263 LFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSL 323 (347)
T ss_pred HHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhH
Confidence 6665555544444555555433333333344556788888999988888877666655543
No 89
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=0.43 Score=40.83 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhcc-----------CCcchhHHHHHHHHH
Q 023413 15 GLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQ-----------PLKAKWYYYLILGLI 83 (282)
Q Consensus 15 g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~-----------~~~~~~~~~~~~g~~ 83 (282)
|+......-+.-+.-....|.-.+......+...++..+.+.+.+.......+. .....+-...+.|++
T Consensus 158 gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~ 237 (314)
T KOG1444|consen 158 GYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVM 237 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHH
Confidence 333333333333333344444333344456677888888888777766543321 112224456677788
Q ss_pred HHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEe
Q 023413 84 DVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 84 ~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
++..+++.+...+..++...++.-...-..+.+-..++.+++.++...+|+.+++.|-.+-..
T Consensus 238 gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 238 GFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY 300 (314)
T ss_pred HHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence 888899999999999998888887555555667677777789999999999999988776544
No 90
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=93.06 E-value=5.6 Score=34.67 Aligned_cols=168 Identities=12% Similarity=0.100 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc----------cCCcchhHHHHHH
Q 023413 11 KTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR----------QPLKAKWYYYLIL 80 (282)
Q Consensus 11 ~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~----------~~~~~~~~~~~~~ 80 (282)
+...|++.-.+.+++-+..++-.|+..+ . +++..+.-..+-.-+..|++.-.- ..+.....+..+.
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~--W--sWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKVKG--W--SWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhcCC--c--cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence 3467888888888888888887777652 2 234333333333334455443211 2222344455666
Q ss_pred HHHHHHHHHHHHHHhhccchhhHhhh-ccchhHHHHHHHHHHhh-------cccchhhhhhHHHhhhcceeeEeecCCC-
Q 023413 81 GLIDVEGNFLVVKAYQYTSLTSVMLL-DCWTIPCVMFLTWIFLK-------TKYRYKKITGVVVCVAGLVTVIFSDVHA- 151 (282)
Q Consensus 81 g~~~~~~~~~~~~al~~~~~~~~~~l-~~~~p~~~~il~~l~l~-------ek~~~~~~~g~~l~~~Gv~l~~~~~~~~- 151 (282)
|++=..+...+-.+++|.+.+..+-+ ..+...+-.++-.++.+ ++-....++|+++.++|+.+....+...
T Consensus 80 G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke 159 (344)
T PF06379_consen 80 GVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE 159 (344)
T ss_pred HHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence 76655556667799999777655433 23333444444444433 2334567889999999999986532111
Q ss_pred ---CCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 023413 152 ---GDRGSGSSPRKGDALVIAGATLYAVSNVSEE 182 (282)
Q Consensus 152 ---~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~ 182 (282)
+++.++.+..+|.+.++.+++.-|..++-.+
T Consensus 160 ~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ 193 (344)
T PF06379_consen 160 KELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLD 193 (344)
T ss_pred hhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1222445556899999999999888887654
No 91
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=92.91 E-value=1.1 Score=38.21 Aligned_cols=133 Identities=19% Similarity=0.146 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhcC---CCchHHHHHHHHHHHHHHHHHHHHhhc------------cCCcc-hhH
Q 023413 12 TLLGLGLGQFLSLLITSTGFSSSELARKG---INAPTSQSFFNYVLLAIVYGSLMLYRR------------QPLKA-KWY 75 (282)
Q Consensus 12 ~~~g~~~~~~~a~~~~~~~~~~~~l~~~~---~~~p~~~~~~r~~~~~l~l~~~~~~~~------------~~~~~-~~~ 75 (282)
+..|..+...++++-+.-+.+.+++.+++ ..+|....+--.....+.++|..+..+ ..+.. .++
T Consensus 162 ~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~r 241 (349)
T KOG1443|consen 162 NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILR 241 (349)
T ss_pred eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHH
Confidence 45688899999999999999999999873 356666666555555555555444322 11111 122
Q ss_pred HHHHHHHHHHHH---HHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceee
Q 023413 76 YYLILGLIDVEG---NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTV 144 (282)
Q Consensus 76 ~~~~~g~~~~~~---~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~ 144 (282)
..-.+++.+... -...+.=...++.-..++..-..-+.+.+++..+.+++++...|.|..++..|+.+-
T Consensus 242 v~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 242 VIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 222222222222 222333344455555555555666779999999999999999999999999998877
No 92
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.67 E-value=3.6 Score=31.45 Aligned_cols=114 Identities=15% Similarity=0.026 Sum_probs=66.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccC-hhHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Q 023413 161 RKGDALVIAGATLYAVSNVSEEFLVKKAD-RIELMAFLGLFGGIISAVQISILERKELQSIHWSAGAALPFFGYALAMFL 239 (282)
Q Consensus 161 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (282)
....+.+++++.+-.+++-++.|+.+..+ |.......+..|++++.+...+.+..+......+..++...-|...+.+.
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~v 83 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFV 83 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhh
Confidence 46788899999999999999998888655 88888889999988887776564443222211221122221221111111
Q ss_pred HHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHh
Q 023413 240 FYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAY 275 (282)
Q Consensus 240 ~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~ 275 (282)
. .......+...+........-+.+.+.+.+.+=+
T Consensus 84 t-~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~ 118 (150)
T COG3238 84 T-SSILLAPRLGAATTIALVIAGQLIMGLLIDHFGW 118 (150)
T ss_pred h-hhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1 2222233344444444444556677777776543
No 93
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=92.06 E-value=6.1 Score=33.17 Aligned_cols=127 Identities=15% Similarity=0.062 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHH
Q 023413 15 GLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRRQPLKAKWYYYLILGLIDVEGNFLVVKA 94 (282)
Q Consensus 15 g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a 94 (282)
|++.+++++++++...+-.|.... + +++..-++......+.-......++.+.. ..+-++-|.+=..+|.+..-.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~-g--Dg~~fQw~~~~~i~~~g~~v~~~~~~p~f--~p~amlgG~lW~~gN~~~vpi 75 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDT-G--DGFFFQWVMCSGIFLVGLVVNLILGFPPF--YPWAMLGGALWATGNILVVPI 75 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccC-C--CcHHHHHHHHHHHHHHHHHHHHhcCCCcc--eeHHHhhhhhhhcCceeehhH
Confidence 456677888888877777776653 3 34444443333332222222233332222 222345556655568888999
Q ss_pred hhccchhhHhhhccchhHHHHHH-HHH-Hhhcc-----cchhhhhhHHHhhhcceeeEe
Q 023413 95 YQYTSLTSVMLLDCWTIPCVMFL-TWI-FLKTK-----YRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 95 l~~~~~~~~~~l~~~~p~~~~il-~~l-~l~ek-----~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
++..+.+...++-.+.-.++--. +.+ +++++ -++..++|++++++|..+...
T Consensus 76 i~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 76 IKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence 99999999999877755543322 222 33332 355668899999999887765
No 94
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.39 E-value=0.7 Score=38.73 Aligned_cols=124 Identities=10% Similarity=0.167 Sum_probs=81.4
Q ss_pred HHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc----------cCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 023413 27 TSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR----------QPLKAKWYYYLILGLIDVEGNFLVVKAYQ 96 (282)
Q Consensus 27 ~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~~~~~~al~ 96 (282)
++.+-.-....+....+....+++.+.++.+.++..+...+ +.+.+.....++.+..+..+......=++
T Consensus 203 A~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~ 282 (367)
T KOG1582|consen 203 AVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIK 282 (367)
T ss_pred HHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHH
Confidence 33444444444444445567778888888777776655433 22333444445555555554333333344
Q ss_pred ccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCC
Q 023413 97 YTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVH 150 (282)
Q Consensus 97 ~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~ 150 (282)
.-++..++.+...--..|.+++.+++.++++-+..-+..+.+.|+++-..++.+
T Consensus 283 ~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~n 336 (367)
T KOG1582|consen 283 LFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRN 336 (367)
T ss_pred HhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCC
Confidence 456666666666666889999999999999999999999999999998876543
No 95
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=91.12 E-value=0.12 Score=42.52 Aligned_cols=77 Identities=21% Similarity=0.291 Sum_probs=59.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhh----hHHHhhhccee
Q 023413 68 QPLKAKWYYYLILGLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKIT----GVVVCVAGLVT 143 (282)
Q Consensus 68 ~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~----g~~l~~~Gv~l 143 (282)
++..+.-..-+..|..-..+|..+++|.+..+.+.+--+.++..+...+-+.+++|||-+++++. |+.+.+.|..+
T Consensus 203 ~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~ 282 (288)
T COG4975 203 KRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL 282 (288)
T ss_pred cchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence 33334444456778887777999999999999988888889999999999999999999999965 45555555544
Q ss_pred e
Q 023413 144 V 144 (282)
Q Consensus 144 ~ 144 (282)
+
T Consensus 283 l 283 (288)
T COG4975 283 L 283 (288)
T ss_pred h
Confidence 4
No 96
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=90.50 E-value=6.9 Score=34.20 Aligned_cols=138 Identities=9% Similarity=0.029 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhc--cCCcc----hhHHHHHHHH
Q 023413 9 TKKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYRR--QPLKA----KWYYYLILGL 82 (282)
Q Consensus 9 ~~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~--~~~~~----~~~~~~~~g~ 82 (282)
..+...|+...+...++.++.++...++.+++..+-+....-=+.++.++.+.-++..+ +...+ .|-.....-+
T Consensus 178 ~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vV 257 (345)
T KOG2234|consen 178 AQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVV 257 (345)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHH
Confidence 34567888888888888888999999998865544333333334555544444444332 11111 1223333333
Q ss_pred HHHHH-HHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEe
Q 023413 83 IDVEG-NFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 83 ~~~~~-~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
+.... ..+.-.-.+|.+-..=..-.+.+.+++.+.+..+++.+++..-.+|..+.+..+.+-..
T Consensus 258 l~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~ 322 (345)
T KOG2234|consen 258 LLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSL 322 (345)
T ss_pred HHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhc
Confidence 33333 33333566676665555555678889999999999999999999999999988887763
No 97
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=90.36 E-value=4.4 Score=28.22 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH-hHHHHHHHHHHHHHHhcccccC
Q 023413 232 GYALAMFLFYSFVPILLKTNGATMLNLS-LLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
+.+.+++++..+ .++.+..+.... .-...+...+.|.++|||++|+
T Consensus 38 ~~~~s~~~l~~a----l~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~ 84 (93)
T PF00893_consen 38 GYGLSFYFLSLA----LKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSL 84 (93)
T ss_dssp HHHHHHHHHHHH----H-------HHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHH----HhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 445555554443 344443333222 2244788899999999999986
No 98
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=88.79 E-value=2.1 Score=36.95 Aligned_cols=101 Identities=16% Similarity=-0.001 Sum_probs=55.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHH
Q 023413 159 SPRKGDALVIAGATLYAVSNVSEEFLVKKADRIELMAFLGLFGGIISAVQISILERKELQSIHWSAGAALPFFGYALAMF 238 (282)
Q Consensus 159 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (282)
+...|..+++.++++.+.+..++||..++.+....-.-.. ..+.- .+..||..... .+.+..
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~---------------~~~~l-~~~~W~~G~~~--~~~g~~ 65 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSG---------------GRSYL-RRPLWWIGLLL--MVLGEI 65 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccch---------------hhHHH-hhHHHHHHHHH--HhcchH
Confidence 4468999999999999999999998765433210000000 00000 01112211111 122222
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 239 LFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 239 ~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
.... .....++.+.+......-+++.+++.+++||+++.
T Consensus 66 ~~~~----Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~ 104 (300)
T PF05653_consen 66 LNFV----ALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTR 104 (300)
T ss_pred HHHH----HHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchH
Confidence 1112 33444555555555555889999999999999874
No 99
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=88.65 E-value=2.7 Score=35.41 Aligned_cols=134 Identities=16% Similarity=0.154 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHh--------hc-c---------CC
Q 023413 9 TKKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLY--------RR-Q---------PL 70 (282)
Q Consensus 9 ~~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~--------~~-~---------~~ 70 (282)
......|+.+..++.+.-+..++.-....++....+-...++--++....++....- ++ + +.
T Consensus 159 ~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~v 238 (330)
T KOG1583|consen 159 FFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKV 238 (330)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccc
Confidence 334567888888888888888999999998844446677777777666554433210 00 0 11
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcc----chhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEe
Q 023413 71 KAKWYYYLILGLIDVEGNFLVVKAYQYT----SLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 71 ~~~~~~~~~~g~~~~~~~~~~~~al~~~----~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
+..|..+ ++....++.+..+.... ++-.+++...+==.+..+++.+.++...+++.|+|..+.+.|..+-..
T Consensus 239 P~~~~yL----l~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 239 PSMWVYL----LFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred cHHHHHH----HHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1222222 22333355565555443 333444555556678889999999999999999999999999887654
No 100
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=87.84 E-value=7.7 Score=27.45 Aligned_cols=37 Identities=19% Similarity=0.501 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEee
Q 023413 111 IPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFS 147 (282)
Q Consensus 111 p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~ 147 (282)
.....+..+.+-|.|+++..|+|..++++|+.++..+
T Consensus 69 I~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 69 IAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 3446677888889999999999999999999888774
No 101
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=87.70 E-value=2.6 Score=34.39 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCc--------ch-hHHHHHHHHHHHHHHHHHHHHhhccchhhHhhhccchhHHH
Q 023413 44 PTSQSFFNYVLLAIVYGSLMLYRRQPLK--------AK-WYYYLILGLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCV 114 (282)
Q Consensus 44 p~~~~~~r~~~~~l~l~~~~~~~~~~~~--------~~-~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~ 114 (282)
...-.++..+.+..++..+-...+..++ .| .-...+.|++.++..++.-+..+-++.+..+.+-.+.-...
T Consensus 185 d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~ 264 (309)
T COG5070 185 DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPI 264 (309)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChH
Confidence 4566777888887777766544331111 12 22556778888777888888888888888888877777777
Q ss_pred HHHHHHHhhcccchhhhhhHHHhhhcc
Q 023413 115 MFLTWIFLKTKYRYKKITGVVVCVAGL 141 (282)
Q Consensus 115 ~il~~l~l~ek~~~~~~~g~~l~~~Gv 141 (282)
.+.+.++++|+.++..+.++.+++...
T Consensus 265 alaGlvffdap~nf~si~sillGflsg 291 (309)
T COG5070 265 ALAGLVFFDAPVNFLSIFSILLGFLSG 291 (309)
T ss_pred HHhhhhhcCCchhHHHHHHHHHHHHHH
Confidence 788888888888877777777665443
No 102
>PRK02237 hypothetical protein; Provisional
Probab=87.51 E-value=5.2 Score=28.57 Aligned_cols=49 Identities=10% Similarity=0.311 Sum_probs=36.2
Q ss_pred cchhhHhhhccch-hHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEe
Q 023413 98 TSLTSVMLLDCWT-IPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 98 ~~~~~~~~l~~~~-p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
.+.+.+-..+.-. .....+..+.+-|+|+++..++|..++++|+.++..
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 3344444443333 333557789999999999999999999999988865
No 103
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=85.77 E-value=11 Score=26.91 Aligned_cols=112 Identities=12% Similarity=0.032 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhhhhHHhhhc----CCCchHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHH
Q 023413 19 GQFLSLLITSTGFSSSELARK----GINAPTSQSFFNYVLLAIVYGSLMLYRRQPLKAKWYYYLILGLIDVEGNFLVVKA 94 (282)
Q Consensus 19 ~~~~a~~~~~~~~~~~~l~~~----~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a 94 (282)
.+..+++|+.++.+.|.-+.. ++.+.....+.|=.-. ...+|.+.+.. +++..++.+++.-
T Consensus 8 lvaVgllWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~t--------------l~l~w~Y~iPF-llNqcgSaly~~t 72 (125)
T KOG4831|consen 8 LVAVGLLWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKT--------------LFLNWEYLIPF-LLNQCGSALYYLT 72 (125)
T ss_pred HHHHHHHHccccHHHHHHHhhHhhccCchHHHHHHHHHHHH--------------HHHhHHHHHHH-HHHHhhHHHHHHH
Confidence 456789999999999887754 2222122222221111 11223333322 3344457788888
Q ss_pred hhccchhhHhhhccchh-HHHHHHHHHHhhcccchhhhhhHHHhhhcceeeE
Q 023413 95 YQYTSLTSVMLLDCWTI-PCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVI 145 (282)
Q Consensus 95 l~~~~~~~~~~l~~~~p-~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~ 145 (282)
+++.+.+.+..+.+... .++.+.+..+-.|...++.+.|..+.+.|..+.+
T Consensus 73 La~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 73 LASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 99999998888766644 5688888864445566777889999999987764
No 104
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=79.52 E-value=20 Score=26.35 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhcccccC
Q 023413 264 DMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 264 pi~a~l~~~~~~~E~~s~ 281 (282)
-+...+.+.++|||++|+
T Consensus 68 ~v~~~~ig~~~f~E~~s~ 85 (120)
T PRK10452 68 ILFITLFSVLLFDESLSL 85 (120)
T ss_pred HHHHHHHHHHHhCCCCCH
Confidence 455666777777777764
No 105
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=78.51 E-value=16 Score=29.26 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=62.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeecCC
Q 023413 71 KAKWYYYLILGLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSDVH 150 (282)
Q Consensus 71 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~~~ 150 (282)
..+|..+...+.+....+.+.+.++....+-..++-.-+..+-......++.+-..+.....+..+...|-.++..|++.
T Consensus 201 ~~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 201 AAPWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred hCCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 35666666666666666888888888888888877777777777777776666678888899999999999999988776
Q ss_pred C
Q 023413 151 A 151 (282)
Q Consensus 151 ~ 151 (282)
+
T Consensus 281 ~ 281 (290)
T KOG4314|consen 281 D 281 (290)
T ss_pred h
Confidence 4
No 106
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=78.44 E-value=2.7 Score=29.94 Aligned_cols=52 Identities=15% Similarity=0.297 Sum_probs=38.0
Q ss_pred hhccchhhHhhhcc-chhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEe
Q 023413 95 YQYTSLTSVMLLDC-WTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 95 l~~~~~~~~~~l~~-~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
++-.+.+.+-..+. .......+..+.+-|+|+++..++|..+++.|+.++..
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 33344444443332 23344677789999999999999999999999999876
No 107
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=77.87 E-value=23 Score=25.48 Aligned_cols=18 Identities=0% Similarity=-0.097 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhcccccC
Q 023413 264 DMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 264 pi~a~l~~~~~~~E~~s~ 281 (282)
.+.+.+.+.++|||++|+
T Consensus 73 ~v~~~~ig~~~f~e~~~~ 90 (109)
T PRK10650 73 IAATLAAGWILFGQRLNR 90 (109)
T ss_pred HHHHHHHHHHHcCCCCCH
Confidence 456677788888888775
No 108
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=73.62 E-value=26 Score=29.86 Aligned_cols=136 Identities=14% Similarity=0.144 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhh-----c-------cCCcchhHH
Q 023413 9 TKKTLLGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYR-----R-------QPLKAKWYY 76 (282)
Q Consensus 9 ~~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~-----~-------~~~~~~~~~ 76 (282)
.++.+.|-.+.+..-.+-+...+.=.+..++...+|.+.+.+.-+.+.+++..+...- + +....||..
T Consensus 171 ~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~ 250 (372)
T KOG3912|consen 171 YSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGD 250 (372)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHH
Confidence 3455677777777888888777777777777788999999999888765555443211 1 111334332
Q ss_pred H---------HHHHHHHHHHHH--HHH---HHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcce
Q 023413 77 Y---------LILGLIDVEGNF--LVV---KAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLV 142 (282)
Q Consensus 77 ~---------~~~g~~~~~~~~--~~~---~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~ 142 (282)
. +.+...+..... +.+ .=-++.+++.=.++-..-..+.=+++....-|+.+..|+.|.++-+.|.+
T Consensus 251 ~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~ 330 (372)
T KOG3912|consen 251 AFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGII 330 (372)
T ss_pred HHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 222333333222 222 22345677777777776666666667777789999999999999999987
Q ss_pred ee
Q 023413 143 TV 144 (282)
Q Consensus 143 l~ 144 (282)
+-
T Consensus 331 lY 332 (372)
T KOG3912|consen 331 LY 332 (372)
T ss_pred HH
Confidence 64
No 109
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=73.37 E-value=30 Score=24.63 Aligned_cols=53 Identities=9% Similarity=0.165 Sum_probs=35.3
Q ss_pred HHhhccchhhHhhhccchhHH-HHHHHHHHhhcccchhhhhhHHHhhhcceeeE
Q 023413 93 KAYQYTSLTSVMLLDCWTIPC-VMFLTWIFLKTKYRYKKITGVVVCVAGLVTVI 145 (282)
Q Consensus 93 ~al~~~~~~~~~~l~~~~p~~-~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~ 145 (282)
.|.+.-+.++--+++=...+. -...+.+++||++++....|.++.+.+++.+.
T Consensus 54 iG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 54 IGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred hhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 344444444444444333332 34567889999999999999999988877653
No 110
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=71.82 E-value=35 Score=24.62 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhcccccC
Q 023413 264 DMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 264 pi~a~l~~~~~~~E~~s~ 281 (282)
.+...+.|+++|||++|+
T Consensus 68 ~v~~~l~g~~~f~e~~~~ 85 (110)
T PRK09541 68 IVLISLLSWGFFGQRLDL 85 (110)
T ss_pred HHHHHHHHHHHhCCCCCH
Confidence 344456666666666654
No 111
>PRK11431 multidrug efflux system protein; Provisional
Probab=67.66 E-value=42 Score=23.96 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhcccccC
Q 023413 264 DMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 264 pi~a~l~~~~~~~E~~s~ 281 (282)
.+.+.+.|+++|||++|+
T Consensus 67 ~v~~~lig~~~f~e~~~~ 84 (105)
T PRK11431 67 AVGAAITGIVLLGESASP 84 (105)
T ss_pred HHHHHHHHHHHhCCCCCH
Confidence 455667777777777764
No 112
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=62.71 E-value=54 Score=23.48 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhcccccC
Q 023413 264 DMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 264 pi~a~l~~~~~~~E~~s~ 281 (282)
.+.+.+.|+++|||+.|+
T Consensus 68 ~v~~~l~g~~~f~E~l~~ 85 (106)
T COG2076 68 IVGTALVGVLLFGESLSL 85 (106)
T ss_pred HHHHHHHHHHhcCCcCCH
Confidence 445566666777776654
No 113
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=59.97 E-value=2.9 Score=35.70 Aligned_cols=108 Identities=16% Similarity=0.220 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhh-c---c--CC---------cchhH---HHHHHHH
Q 023413 21 FLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLMLYR-R---Q--PL---------KAKWY---YYLILGL 82 (282)
Q Consensus 21 ~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~-~---~--~~---------~~~~~---~~~~~g~ 82 (282)
++-+||+.-....|...+++..+ +...+-|.++.++...+.-.. + + +. -.+|. ..++-|+
T Consensus 3 itmlcwGSW~nt~kL~~r~gR~~--qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv 80 (336)
T PF07168_consen 3 ITMLCWGSWPNTQKLAERRGRLP--QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV 80 (336)
T ss_pred eehhhhcChHHHHHHHHhcCCcc--ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence 45578888788888887765543 335555666555544443221 1 0 11 11222 2334455
Q ss_pred HHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhh
Q 023413 83 IDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKK 130 (282)
Q Consensus 83 ~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~ 130 (282)
+...+|.+..+|+.+.+.+++-++.....+..-..--.++..|.++-.
T Consensus 81 vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfld~~~n~a~ 128 (336)
T PF07168_consen 81 VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFLDPKINRAE 128 (336)
T ss_pred hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeeccCCCCCce
Confidence 555569999999999888887777655554432222334556666543
No 114
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=48.78 E-value=72 Score=23.15 Aligned_cols=24 Identities=8% Similarity=0.032 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhcccChhH
Q 023413 169 AGATLYAVSNVSEEFLVKKADRIE 192 (282)
Q Consensus 169 ~a~~~~a~~~v~~~~~~~~~~~~~ 192 (282)
+-+++|+..+-+.||..++.++..
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~ 26 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVK 26 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCcc
Confidence 457889999999999887765443
No 115
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=45.84 E-value=79 Score=20.24 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCC-CchHHHH
Q 023413 10 KKTLLGLGLGQFLSLLITSTGFSSSELARKGI-NAPTSQS 48 (282)
Q Consensus 10 ~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~-~~p~~~~ 48 (282)
++...+..+..+...|+...+...++..++|. ..|+...
T Consensus 2 ~~~~l~~~~~llg~~~l~i~~~~~syVd~~G~L~EpFfLi 41 (63)
T PF13127_consen 2 KKYILSLILLLLGVVCLFIFNIIGSYVDEDGVLHEPFFLI 41 (63)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccceECCCCeEecccHHH
Confidence 45678888899999999999999999998854 2444433
No 116
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=43.33 E-value=66 Score=27.07 Aligned_cols=58 Identities=16% Similarity=0.199 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHhhhcCC------CchHHHHHHH----HHHHHHHHHHHHHhhc
Q 023413 10 KKTLLGLGLGQFLSLLITSTGFSSSELARKGI------NAPTSQSFFN----YVLLAIVYGSLMLYRR 67 (282)
Q Consensus 10 ~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~~~------~~p~~~~~~r----~~~~~l~l~~~~~~~~ 67 (282)
+|+..|+.+++++.++.+.+-.-.+++.++++ ..+...+|.+ ++.+++.+..++..+|
T Consensus 179 ~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~r 246 (254)
T PF07857_consen 179 KKRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKR 246 (254)
T ss_pred cchhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhc
Confidence 35788999999999999999888888877542 2344445444 4455555555555444
No 117
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=42.47 E-value=1.8e+02 Score=23.42 Aligned_cols=33 Identities=6% Similarity=0.330 Sum_probs=17.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhhccchh
Q 023413 69 PLKAKWYYYLILGLIDVEGNFLVVKAYQYTSLT 101 (282)
Q Consensus 69 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~ 101 (282)
..+..+++.+..+.......+..+...+..++.
T Consensus 141 ~~r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~ 173 (206)
T PF06570_consen 141 KKRPSWWKYILISVLAMVLWIVIFVLTSFLPPV 173 (206)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 344556666666665555554444444445544
No 118
>PRK14225 camphor resistance protein CrcB; Provisional
Probab=41.18 E-value=1.5e+02 Score=22.24 Aligned_cols=91 Identities=15% Similarity=0.061 Sum_probs=42.8
Q ss_pred CCchhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhc------CCCchHHHHHHHHHHHHHHHHHHHHh-h-cc-CCc
Q 023413 1 MVSFKEFWTKKTLLGLGLGQFLSLLITSTGFSSSELARK------GINAPTSQSFFNYVLLAIVYGSLMLY-R-RQ-PLK 71 (282)
Q Consensus 1 ~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~------~~~~p~~~~~~r~~~~~l~l~~~~~~-~-~~-~~~ 71 (282)
|+|++ ++ ++.+.++. ..+-+..+...|+.... +..+|+.....+..-+.++-...-.. + ++ ...
T Consensus 1 ~~~~~-~~--~~~~~~l~----V~lGG~~Ga~~Ry~l~~~~~~~~~~~fP~gTl~VNi~GsfllG~l~~~~~~~~~~~~~ 73 (137)
T PRK14225 1 MRNWR-QA--ENIRLYIA----VGCGAAIGALLRFLSGWVIVAILGANPLWGTSFVNIVGSFIIMFFATLTGPEGRWLVS 73 (137)
T ss_pred CcchH-HH--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 78887 32 23333332 33344445555554421 23456655555544444332222222 1 12 234
Q ss_pred chhHHHHHHHHHHHHH--HHHHHHHhhcc
Q 023413 72 AKWYYYLILGLIDVEG--NFLVVKAYQYT 98 (282)
Q Consensus 72 ~~~~~~~~~g~~~~~~--~~~~~~al~~~ 98 (282)
++++..+..|.++... +.+.....+..
T Consensus 74 ~~~~~~l~tGflGgfTTFSTfs~E~~~L~ 102 (137)
T PRK14225 74 PAWRQFVMGGLCGGLTTFSSMSLDTFLLV 102 (137)
T ss_pred HHHHHHHHHHHhchhccHHHHHHHHHHHH
Confidence 5566677778877665 33444555543
No 119
>PHA00453 hypothetical protein
Probab=32.39 E-value=26 Score=19.69 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=9.2
Q ss_pred CCchhhhhhHHH
Q 023413 1 MVSFKEFWTKKT 12 (282)
Q Consensus 1 ~~~~~~~~~~~~ 12 (282)
|||++.+.++.+
T Consensus 1 MRNFEKmtrk~n 12 (41)
T PHA00453 1 MRNFEKMTKRSN 12 (41)
T ss_pred CccHHHHHHHhh
Confidence 788888887654
No 120
>PF13129 DUF3953: Protein of unknown function (DUF3953)
Probab=31.95 E-value=20 Score=20.90 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=16.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 023413 4 FKEFWTKKTLLGLGLGQFLSLLI 26 (282)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~a~~~ 26 (282)
.+|++++|+..|+..-..++++|
T Consensus 14 i~e~kk~~k~~g~~~f~~~~f~~ 36 (42)
T PF13129_consen 14 IEEIKKERKSSGILSFLVGAFIL 36 (42)
T ss_pred HHHHHhcccceehHHHHHHHHhe
Confidence 57888888888887666665554
No 121
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=30.89 E-value=1.8e+02 Score=25.49 Aligned_cols=42 Identities=10% Similarity=-0.005 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHH
Q 023413 14 LGLGLGQFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLL 55 (282)
Q Consensus 14 ~g~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~ 55 (282)
.++..+++.++..-....+.+.+.+.|..||....+.-.++.
T Consensus 303 ~~i~~~i~~~~~y~~~~~~~~~lg~~g~l~P~laaw~P~iif 344 (356)
T PRK15071 303 ARVVTGISFGFVFYVSNEIFGPLSLVYGIPPIIGALLPSLLF 344 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 334444444444444444555555555555554444444443
No 122
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=30.44 E-value=96 Score=24.08 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=33.0
Q ss_pred HHHHHHhhcccchhhhhhHHH-------hhhcceeeEeecCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 023413 116 FLTWIFLKTKYRYKKITGVVV-------CVAGLVTVIFSDVHAGDRGSGSSPRKGDALVIAGATLYAVSNVSE 181 (282)
Q Consensus 116 il~~l~l~ek~~~~~~~g~~l-------~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~ 181 (282)
..+..+.|..++..+.+|+.+ ++.|+.++...++. +....+..++.+++.|++-.++-
T Consensus 87 f~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~~~--------~f~qsv~~gf~a~lGfslvmvlf 151 (193)
T COG4657 87 FTEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINEGH--------NFLQSVVYGFGAALGFSLVMVLF 151 (193)
T ss_pred HHHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhhhh--------hHHHHHHHHhhhHhhHHHHHHHH
Confidence 344455556666666666653 45677666543222 22346666677777776655554
No 123
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=25.94 E-value=23 Score=30.12 Aligned_cols=66 Identities=8% Similarity=0.163 Sum_probs=0.0
Q ss_pred chhhHhhhccchhHH-HHHHHHHHhh-cccchhhhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHHHHHHH
Q 023413 99 SLTSVMLLDCWTIPC-VMFLTWIFLK-TKYRYKKITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDALVIAG 170 (282)
Q Consensus 99 ~~~~~~~l~~~~p~~-~~il~~l~l~-ek~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~l~a 170 (282)
+-+..+++++.+.+. +.|+-..++| +-+.+...+.+++.++-..+...-... +...+.|+++.+++
T Consensus 48 t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLt------GQ~LF~Gi~~l~l~ 115 (381)
T PF05297_consen 48 TQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLT------GQTLFVGIVILFLC 115 (381)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhh------ccHHHHHHHHHHHH
Confidence 333344444444433 2233333344 446777777666665544444331111 23345676655443
No 124
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=24.58 E-value=5.5e+02 Score=23.53 Aligned_cols=106 Identities=18% Similarity=0.248 Sum_probs=55.2
Q ss_pred HHHHHHH-HHHHHHHHHHhhhhHHhhhcCCCchHHHHHHHHHHHHHHHHHHHH-----hhc-cCCcchhHHHHHHHHHHH
Q 023413 13 LLGLGLG-QFLSLLITSTGFSSSELARKGINAPTSQSFFNYVLLAIVYGSLML-----YRR-QPLKAKWYYYLILGLIDV 85 (282)
Q Consensus 13 ~~g~~~~-~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~-----~~~-~~~~~~~~~~~~~g~~~~ 85 (282)
+.+++++ .+..+.+.......+.+..+++..+......|....+.....+.. .|. .+.+...........++.
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNi 180 (455)
T COG0534 101 LLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNI 180 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Confidence 3344444 333444555555555555433333444445554444333322211 122 233333434455556677
Q ss_pred HHHHHHHHH----hhccchhhHhhhccchhHHHHHHH
Q 023413 86 EGNFLVVKA----YQYTSLTSVMLLDCWTIPCVMFLT 118 (282)
Q Consensus 86 ~~~~~~~~a----l~~~~~~~~~~l~~~~p~~~~il~ 118 (282)
..++.+.++ +--.+++.++++.+.......+.-
T Consensus 181 vln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~ 217 (455)
T COG0534 181 VLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIY 217 (455)
T ss_pred HhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 778777766 556788888888777766654443
No 125
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=24.56 E-value=72 Score=23.03 Aligned_cols=24 Identities=8% Similarity=0.221 Sum_probs=20.4
Q ss_pred hcccchhhhhhHHHhhhcceeeEe
Q 023413 123 KTKYRYKKITGVVVCVAGLVTVIF 146 (282)
Q Consensus 123 ~ek~~~~~~~g~~l~~~Gv~l~~~ 146 (282)
+.|+++.+-.|+.+.++|+.++..
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~ 28 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYI 28 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 468899999999999999888865
No 126
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=23.67 E-value=60 Score=24.64 Aligned_cols=26 Identities=27% Similarity=0.129 Sum_probs=19.5
Q ss_pred hccchhhHhhhccchhHHHHHHHHHH
Q 023413 96 QYTSLTSVMLLDCWTIPCVMFLTWIF 121 (282)
Q Consensus 96 ~~~~~~~~~~l~~~~p~~~~il~~l~ 121 (282)
.--+.-.++++.|..|+++++++.++
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667888899999998887764
No 127
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=23.53 E-value=2.4e+02 Score=24.09 Aligned_cols=61 Identities=15% Similarity=0.325 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHH---HHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhh
Q 023413 71 KAKWYYYLILGLIDVEGNFLVV---KAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKIT 132 (282)
Q Consensus 71 ~~~~~~~~~~g~~~~~~~~~~~---~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~ 132 (282)
.++......+|+.+....++|. .-++|.+.++..+.....|+.+....+ ......++..+.
T Consensus 105 ~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~y-vq~~~~~~~~ll 168 (284)
T TIGR00751 105 LSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQY-LQAHRVDWVGIL 168 (284)
T ss_pred hhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHH
Confidence 3445556677777666655555 478889999999888888877755433 344455555444
No 128
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=22.87 E-value=60 Score=28.05 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHhhhc
Q 023413 10 KKTLLGLGLGQFLSLLITSTGFSSSELARK 39 (282)
Q Consensus 10 ~~~~~g~~~~~~~a~~~~~~~~~~~~l~~~ 39 (282)
++...|+....+..+|++...-.....+++
T Consensus 215 ~~~~~Gl~i~~faG~c~slFSPafNlAtND 244 (336)
T PF07168_consen 215 SSTLIGLGIAFFAGLCFSLFSPAFNLATND 244 (336)
T ss_pred ccceeeehHHHHHhHHHHhcCchhhccccc
Confidence 345669999999999999877777777766
No 129
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=22.78 E-value=79 Score=17.30 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhcccchhh
Q 023413 113 CVMFLTWIFLKTKYRYKK 130 (282)
Q Consensus 113 ~~~il~~l~l~ek~~~~~ 130 (282)
...++..++.|||+++.+
T Consensus 15 YgiiiT~L~~R~K~~~~~ 32 (33)
T PF11628_consen 15 YGIIITALYCREKFSKSK 32 (33)
T ss_dssp HHHHHHHHHHHHHSTT--
T ss_pred HHHHHHHHHHHHHhhhcC
Confidence 345667778888887653
No 130
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.51 E-value=1.1e+02 Score=26.73 Aligned_cols=102 Identities=12% Similarity=-0.062 Sum_probs=56.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHHHHHhhccccc-cccccchhHHHHHHHH
Q 023413 157 GSSPRKGDALVIAGATLYAVSNVSEEFLVKKADRIELMAFLGLFGGIISAVQISILERKELQS-IHWSAGAALPFFGYAL 235 (282)
Q Consensus 157 ~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 235 (282)
..+..+|..+++.+.+..+..-.+.|+..++... .. ...+.++.+- .++.||...+.++.
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~--------------~ra~~gg~~yl~~~~Ww~G~ltm~v-- 76 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SG--------------LRAGEGGYGYLKEPLWWAGMLTMIV-- 76 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh---hc--------------ccccCCCcchhhhHHHHHHHHHHHH--
Confidence 3445689999999999988888888876654221 00 0111111111 12223333333332
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 236 AMFLFYSFVPILLKTNGATMLNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 236 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
+-..-+. .....++..+.....++.+.+++++..+++|++++
T Consensus 77 Gei~NFa----AYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~ 118 (335)
T KOG2922|consen 77 GEIANFA----AYAFAPASLVTPLGALSVIISAILASFFLKEKLNL 118 (335)
T ss_pred HhHhhHH----HHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 22334444444445555899999999999999875
No 131
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=21.85 E-value=1.5e+02 Score=16.69 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 023413 7 FWTKKTLLGLGLGQFLSLLIT 27 (282)
Q Consensus 7 ~~~~~~~~g~~~~~~~a~~~~ 27 (282)
..|.....|+++....+++++
T Consensus 14 LNRTSLy~GlLlifvl~vLFs 34 (39)
T PRK00753 14 LNRTSLYLGLLLVFVLGILFS 34 (39)
T ss_pred echhhHHHHHHHHHHHHHHHH
Confidence 356667889888888888876
No 132
>PRK11715 inner membrane protein; Provisional
Probab=21.72 E-value=4.8e+02 Score=23.96 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=39.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHh-hccchhhHhhhccchhHH-HHHHHHHHhhcccchhhhhhHHHhhhcceeeE
Q 023413 68 QPLKAKWYYYLILGLIDVEGNFLVVKAY-QYTSLTSVMLLDCWTIPC-VMFLTWIFLKTKYRYKKITGVVVCVAGLVTVI 145 (282)
Q Consensus 68 ~~~~~~~~~~~~~g~~~~~~~~~~~~al-~~~~~~~~~~l~~~~p~~-~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~ 145 (282)
++.+-+...|+++|+-.... +++..|+ +|.+-..+-++.+..++. ...-..-++|.+-.-.-..+...++-|+....
T Consensus 325 ~~~~iHpiQYlLVGlAl~lF-YLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly~l 403 (436)
T PRK11715 325 KKLRIHPVQYLLVGLALVLF-YLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWKRGLLFAAALAALYGVLYGL 403 (436)
T ss_pred cCceecHHHHHHHHHHHHHH-HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 44456666777777665443 3333333 456666666665555543 22333334444444444444555555555554
Q ss_pred e
Q 023413 146 F 146 (282)
Q Consensus 146 ~ 146 (282)
.
T Consensus 404 L 404 (436)
T PRK11715 404 L 404 (436)
T ss_pred H
Confidence 4
No 133
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=21.58 E-value=1.8e+02 Score=17.89 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=30.2
Q ss_pred hhhhHHHhhhcceeeEeecCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 023413 130 KITGVVVCVAGLVTVIFSDVHAGDRGSGSSPRKGDALVIAGATLYAVSNVSEEFLV 185 (282)
Q Consensus 130 ~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~ 185 (282)
..+|..+.+.|++++..|+ .|.+..+++-...|...-..||..
T Consensus 5 ~v~G~~lv~~Gii~~~lPG-------------pG~l~i~~GL~iLa~ef~wArr~l 47 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLPG-------------PGLLVIFLGLAILATEFPWARRLL 47 (53)
T ss_pred hhHHHHHHHHHHHhhcCCC-------------CcHHHHHHHHHHHHHhhHHHHHHH
Confidence 4678888899999887743 266666677667777666666554
No 134
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.26 E-value=3.1e+02 Score=19.39 Aligned_cols=30 Identities=10% Similarity=0.279 Sum_probs=26.0
Q ss_pred HHHHHHhhcccchhhhhhHHHhhhcceeeE
Q 023413 116 FLTWIFLKTKYRYKKITGVVVCVAGLVTVI 145 (282)
Q Consensus 116 il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~ 145 (282)
.++.+.+||++++..+.+..+...|+.++.
T Consensus 85 ~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 85 PFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 458889999999999999999998887664
No 135
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=20.68 E-value=4.5e+02 Score=21.08 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=33.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHh------hcccchh
Q 023413 71 KAKWYYYLILGLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFL------KTKYRYK 129 (282)
Q Consensus 71 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l------~ek~~~~ 129 (282)
+..++++++........+.+.+.+....|.+..-. +.|+...+.+...+ |+|.+.+
T Consensus 158 r~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~~---L~pi~l~IiGav~lalRfylkkk~NIq 219 (226)
T COG4858 158 RPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNPQ---LPPIALTIIGAVILALRFYLKKKKNIQ 219 (226)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcC---CchHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34455666666666666666667777777665443 55666555555443 5555544
No 136
>CHL00038 psbL photosystem II protein L
Probab=20.54 E-value=1.8e+02 Score=16.36 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 023413 7 FWTKKTLLGLGLGQFLSLLIT 27 (282)
Q Consensus 7 ~~~~~~~~g~~~~~~~a~~~~ 27 (282)
..|.....|+++....+++++
T Consensus 13 LNRTSLy~GLLlifvl~vlfs 33 (38)
T CHL00038 13 LNRTSLYWGLLLIFVLAVLFS 33 (38)
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 346667788888777777765
No 137
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=20.37 E-value=4.4e+02 Score=20.82 Aligned_cols=23 Identities=22% Similarity=0.098 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 023413 11 KTLLGLGLGQFLSLLITSTGFSS 33 (282)
Q Consensus 11 ~~~~g~~~~~~~a~~~~~~~~~~ 33 (282)
+.......+++.++.++++..+=
T Consensus 77 ~~~~~~~a~lv~al~fafS~sfW 99 (178)
T PF11028_consen 77 QTIAILGAGLVGALAFAFSDSFW 99 (178)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHH
Confidence 34445566777777777764443
Done!