Query 023413
Match_columns 282
No_of_seqs 139 out of 1796
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 06:22:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.6 1.7E-07 5.9E-12 67.2 7.0 69 79-147 34-104 (110)
2 2i68_A Protein EMRE; transmemb 98.4 2.1E-07 7E-12 69.2 4.6 70 79-148 34-105 (137)
3 2i68_A Protein EMRE; transmemb 96.7 0.0059 2E-07 45.1 7.2 48 230-281 37-85 (137)
4 3b5d_A Multidrug transporter E 96.0 0.048 1.6E-06 38.5 8.7 45 233-281 40-85 (110)
5 3arc_L Photosystem II reaction 18.9 1.2E+02 0.0042 16.1 2.9 21 7-27 12-32 (37)
6 2hac_A T-cell surface glycopro 17.7 69 0.0024 16.7 1.6 17 113-129 15-31 (33)
7 3gp2_B Calcium/calmodulin-depe 12.7 1.4E+02 0.0049 14.0 2.2 17 6-22 2-18 (22)
8 2pq4_B Periplasmic nitrate red 5.8 4E+02 0.014 13.9 2.2 12 7-18 3-14 (35)
9 3b9w_A Ammonium transporter fa 5.6 1.3E+03 0.045 19.7 10.8 44 160-203 259-306 (407)
10 1q90_R Cytochrome B6-F complex 4.6 6E+02 0.02 14.5 4.4 31 6-36 8-38 (49)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.55 E-value=1.7e-07 Score=67.20 Aligned_cols=69 Identities=16% Similarity=0.294 Sum_probs=60.1
Q ss_pred HHHHHHHHH-HHHHHHHhhccchhhHhhh-ccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEee
Q 023413 79 ILGLIDVEG-NFLVVKAYQYTSLTSVMLL-DCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFS 147 (282)
Q Consensus 79 ~~g~~~~~~-~~~~~~al~~~~~~~~~~l-~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~ 147 (282)
..+.+.... .+++.+++++.|.+.+..+ ..+.|+.+.+++.+++||++++.|++|+.+++.|++++...
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344444444 6677799999999999999 79999999999999999999999999999999999998663
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.42 E-value=2.1e-07 Score=69.22 Aligned_cols=70 Identities=16% Similarity=0.292 Sum_probs=49.7
Q ss_pred HHHHHHHHH-HHHHHHHhhccchhhHhhh-ccchhHHHHHHHHHHhhcccchhhhhhHHHhhhcceeeEeec
Q 023413 79 ILGLIDVEG-NFLVVKAYQYTSLTSVMLL-DCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSD 148 (282)
Q Consensus 79 ~~g~~~~~~-~~~~~~al~~~~~~~~~~l-~~~~p~~~~il~~l~l~ek~~~~~~~g~~l~~~Gv~l~~~~~ 148 (282)
+.+++.... .+++.+++++.+++.+..+ ..+.|+++.++++++++|++++.|++|+.+++.|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345544444 7777899999999999999 899999999999999999999999999999999999986543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.67 E-value=0.0059 Score=45.06 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hHHHHHHHHHHHHHHhcccccC
Q 023413 230 FFGYALAMFLFYSFVPILLKTNGATMLNLS-LLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
..++++++++++.+ .+..+....... ..+.|+++.+++++++||++|+
T Consensus 37 i~~~~ls~~l~~~a----lk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~ 85 (137)
T 2i68_A 37 IICYCASFWLLAQT----LAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL 85 (137)
T ss_dssp HHHHHHHHHHHHHH----HC-----CHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHH----HHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34455665555444 555555544444 5566999999999999999986
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.02 E-value=0.048 Score=38.50 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH-hHHHHHHHHHHHHHHhcccccC
Q 023413 233 YALAMFLFYSFVPILLKTNGATMLNLS-LLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
.+.+++++ .+..++.+...+... .-+.|+.+.+.+++++||++|+
T Consensus 40 ~~~~~~~~----~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~ 85 (110)
T 3b5d_A 40 YCASFWLL----AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL 85 (110)
T ss_pred HHHHHHHH----HHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCH
Confidence 44444444 335566666665555 5667999999999999999985
No 5
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=18.85 E-value=1.2e+02 Score=16.08 Aligned_cols=21 Identities=33% Similarity=0.333 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 023413 7 FWTKKTLLGLGLGQFLSLLIT 27 (282)
Q Consensus 7 ~~~~~~~~g~~~~~~~a~~~~ 27 (282)
..|.....|+++....+++++
T Consensus 12 LNRTSLy~GLLlifvlavlFs 32 (37)
T 3arc_L 12 LNRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred echhhHHHHHHHHHHHHHHhh
Confidence 356677889888888888776
No 6
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=17.70 E-value=69 Score=16.74 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhcccchh
Q 023413 113 CVMFLTWIFLKTKYRYK 129 (282)
Q Consensus 113 ~~~il~~l~l~ek~~~~ 129 (282)
.-.++..++.+||+++.
T Consensus 15 Ygii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 15 YGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 34566777888887764
No 7
>3gp2_B Calcium/calmodulin-dependent protein kinase type II delta chain; metal binding protein, ATP-binding, calmodulin- binding, nucleotide-binding; 1.46A {Homo sapiens}
Probab=12.74 E-value=1.4e+02 Score=13.99 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=10.9
Q ss_pred hhhhHHHHHHHHHHHHH
Q 023413 6 EFWTKKTLLGLGLGQFL 22 (282)
Q Consensus 6 ~~~~~~~~~g~~~~~~~ 22 (282)
+++-|++++|-++....
T Consensus 2 kFNaRRKLK~aIl~~~~ 18 (22)
T 3gp2_B 2 SFNARRKLKGAILTTML 18 (26)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 45667778877665443
No 8
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=5.76 E-value=4e+02 Score=13.89 Aligned_cols=12 Identities=0% Similarity=-0.009 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHH
Q 023413 7 FWTKKTLLGLGL 18 (282)
Q Consensus 7 ~~~~~~~~g~~~ 18 (282)
++||+.+|+-..
T Consensus 3 lsRR~FLK~~aa 14 (35)
T 2pq4_B 3 LSRRSFMKANAV 14 (35)
T ss_dssp CCSHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 578999887653
No 9
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=5.63 E-value=1.3e+03 Score=19.70 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=21.0
Q ss_pred cchhHHHHHHHHHHHHHHH-HHH---HHhhcccChhHHHHHHHHHHHH
Q 023413 160 PRKGDALVIAGATLYAVSN-VSE---EFLVKKADRIELMAFLGLFGGI 203 (282)
Q Consensus 160 ~~~G~~~~l~a~~~~a~~~-v~~---~~~~~~~~~~~~~~~~~~~~~~ 203 (282)
++-..+.++++++..-... .+. ++..+-+|+......-...|..
T Consensus 259 p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~ 306 (407)
T 3b9w_A 259 PVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLL 306 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHH
Confidence 3445556655555443333 222 2224446676666654444433
No 10
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=4.63 E-value=6e+02 Score=14.47 Aligned_cols=31 Identities=6% Similarity=-0.189 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhHHh
Q 023413 6 EFWTKKTLLGLGLGQFLSLLITSTGFSSSEL 36 (282)
Q Consensus 6 ~~~~~~~~~g~~~~~~~a~~~~~~~~~~~~l 36 (282)
.++|||...-+.++.......+...-..++.
T Consensus 8 dm~RRqfln~l~~G~~a~~a~~~~~P~v~ff 38 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGLPITTLALGYGAFF 38 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 4677777655555555554444445555544
Done!