Query 023413
Match_columns 282
No_of_seqs 139 out of 1796
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 06:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023413.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023413hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 29.0 26 0.0019 15.7 2.8 18 162-179 3-20 (27)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 18.5 57 0.0042 15.9 2.9 21 7-27 12-32 (37)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 8.6 2.6E+02 0.019 20.3 5.2 54 77-134 5-58 (248)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 5.7 5.9E+02 0.043 19.5 12.6 44 161-205 280-324 (383)
5 d1pv7a_ f.38.1.2 (A:) Lactose 4.8 5.6E+02 0.041 18.2 8.2 44 5-48 2-46 (417)
6 d1ppjd2 f.23.11.1 (D:196-241) 4.6 2.7E+02 0.02 14.3 4.2 23 7-30 3-25 (46)
7 d2yvxa3 f.57.1.1 (A:276-448) M 3.5 6.3E+02 0.046 16.8 6.4 23 3-25 76-98 (173)
8 d2drpa2 g.37.1.1 (A:140-165) T 2.3 2.1E+02 0.015 12.3 0.2 10 4-13 8-17 (26)
9 d1gl4a1 d.22.1.2 (A:399-631) D 1.9 4.1E+02 0.03 19.0 1.6 36 93-129 43-78 (233)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 1.5 5.8E+02 0.042 11.2 3.7 26 256-281 4-29 (30)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=29.03 E-value=26 Score=15.74 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 023413 162 KGDALVIAGATLYAVSNV 179 (282)
Q Consensus 162 ~G~~~~l~a~~~~a~~~v 179 (282)
.|.+..-++++.||.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 588888899999998864
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=18.47 E-value=57 Score=15.93 Aligned_cols=21 Identities=33% Similarity=0.333 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 023413 7 FWTKKTLLGLGLGQFLSLLIT 27 (282)
Q Consensus 7 ~~~~~~~~g~~~~~~~a~~~~ 27 (282)
.+|.....|+++....+++++
T Consensus 12 LNrtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 12 LNRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHH
Confidence 346667788888888888776
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=8.63 E-value=2.6e+02 Score=20.27 Aligned_cols=54 Identities=20% Similarity=0.181 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhHhhhccchhHHHHHHHHHHhhcccchhhhhhH
Q 023413 77 YLILGLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITGV 134 (282)
Q Consensus 77 ~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~~~~g~ 134 (282)
+.++|++.....++....+..-+-..+.+ .-+.+.++-++++.+|.-+.+++-=
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy~s~r~~p~kyi~P 58 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIFANRKAYAWRYVYP 58 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHHSSSCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEEEccCccceehhhh
Confidence 34445554444444333333333333222 1233444445556666555555433
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=5.69 E-value=5.9e+02 Score=19.52 Aligned_cols=44 Identities=9% Similarity=0.048 Sum_probs=23.7
Q ss_pred chhHHHHHHHH-HHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH
Q 023413 161 RKGDALVIAGA-TLYAVSNVSEEFLVKKADRIELMAFLGLFGGIIS 205 (282)
Q Consensus 161 ~~G~~~~l~a~-~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (282)
+-..+.+.+++ +|+-.+..+ |+..|-+||..........+..-.
T Consensus 280 ~~A~~iG~i~g~i~~~~~~~l-~~~~~iDD~~~~~~vHg~~Gi~G~ 324 (383)
T d1u7ga_ 280 GGALIIGVVAGLAGLWGVTML-KRLLRVDDPCDVFGVHGVCGIVGC 324 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHCSCCGGGHHHHHHHHHHHHH
T ss_pred hhHHHHHhhccHHHHHHHHHH-HhhcccccccceEeehhhhHHHHH
Confidence 33455555544 444444444 333566778877776555554443
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.75 E-value=5.6e+02 Score=18.16 Aligned_cols=44 Identities=7% Similarity=-0.170 Sum_probs=20.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh-hhhHHhhhcCCCchHHHH
Q 023413 5 KEFWTKKTLLGLGLGQFLSLLITSTG-FSSSELARKGINAPTSQS 48 (282)
Q Consensus 5 ~~~~~~~~~~g~~~~~~~a~~~~~~~-~~~~~l~~~~~~~p~~~~ 48 (282)
+.+|+|+.+.-.+...+..+.++... ....++.++...++.+..
T Consensus 2 ~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g 46 (417)
T d1pv7a_ 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTG 46 (417)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred CcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence 45566666654444444444444433 333345443223444443
No 6
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.63 E-value=2.7e+02 Score=14.32 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 023413 7 FWTKKTLLGLGLGQFLSLLITSTG 30 (282)
Q Consensus 7 ~~~~~~~~g~~~~~~~a~~~~~~~ 30 (282)
++.|+. +|+=..+++.++.+.+.
T Consensus 3 ~d~RK~-mG~Kv~~~l~~l~~l~y 25 (46)
T d1ppjd2 3 HDHRKR-MGLKMLLMMGLLLPLVY 25 (46)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHH
Confidence 344444 44444444444444433
No 7
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=3.46 E-value=6.3e+02 Score=16.81 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=13.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHHH
Q 023413 3 SFKEFWTKKTLLGLGLGQFLSLL 25 (282)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~a~~ 25 (282)
|.++.-+||..-|+..+...+++
T Consensus 76 ~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 76 DWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454566666677666666554
No 8
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}
Probab=2.26 E-value=2.1e+02 Score=12.33 Aligned_cols=10 Identities=50% Similarity=0.803 Sum_probs=6.1
Q ss_pred hhhhhhHHHH
Q 023413 4 FKEFWTKKTL 13 (282)
Q Consensus 4 ~~~~~~~~~~ 13 (282)
+||+.|+++.
T Consensus 8 fkeftrkdnm 17 (26)
T d2drpa2 8 FKEFTRKDNM 17 (26)
T ss_dssp CCEESCHHHH
T ss_pred hHHhccccCc
Confidence 4666666654
No 9
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.94 E-value=4.1e+02 Score=18.99 Aligned_cols=36 Identities=17% Similarity=0.083 Sum_probs=28.3
Q ss_pred HHhhccchhhHhhhccchhHHHHHHHHHHhhcccchh
Q 023413 93 KAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYK 129 (282)
Q Consensus 93 ~al~~~~~~~~~~l~~~~p~~~~il~~l~l~ek~~~~ 129 (282)
.++..+|...+..+..+.|+.. .++|+|-+|.....
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~-~igWlFA~e~~~a~ 78 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGG-IIGWMFAVEQDGFK 78 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHH-HHHHHTCEECTTCC
T ss_pred EEccCCChhHhhhhhhhhhhcC-ceeeeEEeecCCcc
Confidence 3567788888899988888887 67899888876644
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.46 E-value=5.8e+02 Score=11.19 Aligned_cols=26 Identities=8% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHhcccccC
Q 023413 256 LNLSLLTSDMWAVLIRIGAYHEKVCK 281 (282)
Q Consensus 256 ~~~~~~~~pi~a~l~~~~~~~E~~s~ 281 (282)
........-+++..+=..+|+|++..
T Consensus 4 i~yv~ifac~i~lfffaiffreppri 29 (30)
T d2axtt1 4 ITYVFIFACIIALFFFAIFFREPPRI 29 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCCC
T ss_pred eehHHHHHHHHHHHHHHHHhcCCCCC
Done!