Query 023414
Match_columns 282
No_of_seqs 105 out of 1197
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:51:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3290 Peroxisomal phytanoyl- 100.0 3.2E-41 6.9E-46 280.2 10.6 277 4-280 1-284 (286)
2 TIGR02408 ectoine_ThpD ectoine 100.0 4.8E-39 1E-43 282.5 20.3 224 3-261 13-252 (277)
3 TIGR01762 chlorin-enz chlorina 100.0 1.2E-37 2.7E-42 273.9 21.8 229 6-275 2-265 (288)
4 PF05721 PhyH: Phytanoyl-CoA d 100.0 4E-31 8.6E-36 221.8 14.5 199 15-251 1-211 (211)
5 COG5285 Protein involved in bi 99.9 3.9E-26 8.5E-31 194.5 10.9 217 6-259 10-232 (299)
6 PF07350 DUF1479: Protein of u 99.0 1.8E-09 4E-14 98.1 9.9 212 5-259 61-360 (416)
7 PRK05467 Fe(II)-dependent oxyg 98.6 1.8E-06 3.9E-11 73.3 13.0 89 140-258 84-178 (226)
8 smart00702 P4Hc Prolyl 4-hydro 98.5 1.8E-05 3.9E-10 65.0 16.8 82 147-256 93-177 (178)
9 PLN00052 prolyl 4-hydroxylase; 98.0 0.0002 4.4E-09 63.7 14.9 99 147-259 142-253 (310)
10 PF13640 2OG-FeII_Oxy_3: 2OG-F 97.7 2.8E-05 6.1E-10 57.4 3.5 88 147-256 9-99 (100)
11 PF13759 2OG-FeII_Oxy_5: Putat 97.4 0.00065 1.4E-08 50.4 6.9 79 166-254 22-100 (101)
12 TIGR02466 conserved hypothetic 97.3 0.008 1.7E-07 50.3 12.5 132 107-257 62-199 (201)
13 COG3128 PiuC Uncharacterized i 97.0 0.012 2.5E-07 47.9 10.3 85 147-259 92-182 (229)
14 PF13532 2OG-FeII_Oxy_2: 2OG-F 95.7 0.15 3.2E-06 42.1 10.4 39 217-255 145-194 (194)
15 KOG3710 EGL-Nine (EGLN) protei 95.5 0.78 1.7E-05 38.8 13.5 184 12-260 47-241 (280)
16 PF12851 Tet_JBP: Oxygenase do 93.5 0.5 1.1E-05 38.5 8.1 79 148-255 85-168 (171)
17 PHA02813 hypothetical protein; 93.4 0.67 1.4E-05 41.7 9.3 70 147-248 104-173 (354)
18 PHA02869 C4L/C10L-like gene fa 92.6 0.57 1.2E-05 42.8 7.8 80 147-258 113-195 (418)
19 PRK15401 alpha-ketoglutarate-d 91.7 3.5 7.5E-05 34.8 10.9 38 219-256 166-212 (213)
20 COG4340 Uncharacterized protei 91.5 2.1 4.5E-05 35.1 8.9 105 108-245 87-201 (226)
21 TIGR02409 carnitine_bodg gamma 84.1 1.9 4E-05 39.6 5.0 43 218-260 312-355 (366)
22 KOG3844 Predicted component of 84.0 27 0.0006 32.2 12.0 186 10-259 25-218 (476)
23 PF03171 2OG-FeII_Oxy: 2OG-Fe( 83.8 1.9 4.2E-05 31.1 4.1 81 145-258 13-98 (98)
24 KOG3290 Peroxisomal phytanoyl- 82.1 0.84 1.8E-05 39.4 1.8 43 5-47 30-72 (286)
25 PRK09553 tauD taurine dioxygen 78.8 3.6 7.9E-05 36.1 4.8 40 218-257 232-272 (277)
26 TIGR00568 alkb DNA alkylation 78.4 22 0.00047 28.9 8.8 21 219-239 145-168 (169)
27 PF13661 2OG-FeII_Oxy_4: 2OG-F 76.8 5 0.00011 27.3 4.0 30 145-174 19-48 (70)
28 KOG1591 Prolyl 4-hydroxylase a 76.6 54 0.0012 29.1 12.2 27 19-45 98-124 (289)
29 cd00250 CAS_like Clavaminic ac 75.8 5.1 0.00011 34.7 4.8 37 218-254 218-257 (262)
30 TIGR02410 carnitine_TMLD trime 71.9 5.7 0.00012 36.4 4.3 40 218-260 311-351 (362)
31 KOG3888 Gamma-butyrobetaine,2- 71.4 6.2 0.00013 35.7 4.2 40 219-259 347-389 (407)
32 PF02668 TauD: Taurine catabol 71.3 4.8 0.0001 34.3 3.6 37 217-253 218-256 (258)
33 PF08856 DUF1826: Protein of u 70.5 5.9 0.00013 33.0 3.7 35 220-254 151-195 (196)
34 COG2175 TauD Probable taurine 70.5 7.5 0.00016 34.4 4.6 41 218-259 237-278 (286)
35 PRK02963 carbon starvation ind 63.7 11 0.00024 33.8 4.2 41 218-258 265-310 (316)
36 PLN03001 oxidoreductase, 2OG-F 55.0 76 0.0016 27.6 8.0 40 221-261 172-216 (262)
37 KOG0143 Iron/ascorbate family 54.4 74 0.0016 28.7 8.0 36 10-45 39-75 (322)
38 PLN02276 gibberellin 20-oxidas 54.0 90 0.0019 28.6 8.7 96 144-282 219-326 (361)
39 PF14226 DIOX_N: non-haem diox 53.9 35 0.00077 25.1 5.1 38 8-45 17-55 (116)
40 PLN02216 protein SRG1 53.3 81 0.0018 28.8 8.2 97 144-282 223-331 (357)
41 PLN02947 oxidoreductase 51.6 1.1E+02 0.0023 28.3 8.7 37 9-45 85-122 (374)
42 PF07883 Cupin_2: Cupin domain 50.5 10 0.00023 25.0 1.5 23 221-243 38-60 (71)
43 PLN03176 flavanone-3-hydroxyla 49.1 46 0.001 25.2 5.0 37 9-45 58-95 (120)
44 smart00839 ELFV_dehydrog Gluta 48.0 46 0.00099 24.4 4.7 26 2-27 31-56 (102)
45 PF05118 Asp_Arg_Hydrox: Aspar 47.7 24 0.00051 28.3 3.4 37 221-258 125-161 (163)
46 PRK09943 DNA-binding transcrip 47.7 27 0.00059 28.4 3.9 26 220-246 146-171 (185)
47 PF02311 AraC_binding: AraC-li 47.6 20 0.00043 26.6 2.9 39 220-259 41-79 (136)
48 PLN02254 gibberellin 3-beta-di 44.9 1E+02 0.0023 28.1 7.6 96 144-282 223-331 (358)
49 PRK10838 spr outer membrane li 44.4 15 0.00032 30.5 1.8 12 222-233 127-138 (190)
50 PRK11354 kil FtsZ inhibitor pr 43.4 29 0.00062 23.6 2.7 26 219-244 11-36 (73)
51 PLN02912 oxidoreductase, 2OG-F 41.6 1.9E+02 0.0041 26.3 8.7 37 9-45 60-97 (348)
52 COG3145 AlkB Alkylated DNA rep 41.5 1.5E+02 0.0033 24.7 7.2 28 218-245 155-185 (194)
53 PF06047 SynMuv_product: Ras-i 41.1 21 0.00045 26.2 1.9 20 6-25 34-53 (104)
54 COG2140 Thermophilic glucose-6 39.9 1.8E+02 0.004 24.4 7.5 53 217-271 123-175 (209)
55 PRK13290 ectC L-ectoine syntha 39.8 69 0.0015 24.5 4.8 36 220-259 75-110 (125)
56 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 39.2 40 0.00087 28.0 3.6 37 220-256 153-195 (195)
57 PRK10204 hypothetical protein; 38.3 82 0.0018 20.0 3.9 39 4-42 1-52 (55)
58 KOG2107 Uncharacterized conser 37.0 30 0.00066 27.8 2.4 30 217-246 113-142 (179)
59 PLN02515 naringenin,2-oxogluta 32.0 2.9E+02 0.0062 25.3 8.3 98 144-282 208-316 (358)
60 KOG2371 Molybdopterin biosynth 31.4 36 0.00078 31.1 2.2 39 8-46 217-255 (411)
61 COG1917 Uncharacterized conser 31.4 1.1E+02 0.0024 23.1 4.8 27 221-247 83-109 (131)
62 PF13621 Cupin_8: Cupin-like d 30.2 66 0.0014 27.0 3.7 43 217-259 206-248 (251)
63 PF10637 Ofd1_CTDD: Oxoglutara 30.2 80 0.0017 27.7 4.1 32 11-42 23-54 (266)
64 PF03079 ARD: ARD/ARD' family; 29.6 65 0.0014 25.8 3.2 40 217-259 112-151 (157)
65 TIGR02219 phage_NlpC_fam putat 28.6 33 0.00071 26.5 1.3 11 223-233 76-86 (134)
66 PRK15457 ethanolamine utilizat 28.4 93 0.002 26.6 4.1 34 219-256 192-226 (233)
67 PF02668 TauD: Taurine catabol 27.5 92 0.002 26.2 4.1 43 148-193 95-137 (258)
68 PLN02704 flavonol synthase 26.9 2.9E+02 0.0063 24.9 7.4 37 9-45 58-95 (335)
69 COG1482 ManA Phosphomannose is 26.8 77 0.0017 28.4 3.5 25 219-243 157-181 (312)
70 PRK04190 glucose-6-phosphate i 26.7 1.3E+02 0.0028 24.9 4.6 24 219-242 119-142 (191)
71 PRK10371 DNA-binding transcrip 26.4 1E+02 0.0023 27.2 4.4 23 220-242 64-86 (302)
72 PRK07114 keto-hydroxyglutarate 26.0 1E+02 0.0022 26.2 4.0 34 5-38 98-131 (222)
73 PRK11171 hypothetical protein; 25.8 74 0.0016 27.7 3.2 33 220-252 223-255 (266)
74 PLN03002 oxidoreductase, 2OG-F 24.9 1.5E+02 0.0032 26.8 5.1 37 9-45 30-67 (332)
75 PLN02704 flavonol synthase 24.9 1.4E+02 0.0031 26.9 5.0 40 221-261 255-299 (335)
76 COG0234 GroS Co-chaperonin Gro 24.3 1.5E+02 0.0033 21.6 4.0 19 217-235 52-70 (96)
77 PF04074 DUF386: Domain of unk 24.1 78 0.0017 24.9 2.8 36 217-252 110-147 (153)
78 PF13101 DUF3945: Protein of u 23.9 52 0.0011 21.5 1.5 24 6-29 34-57 (59)
79 PRK06015 keto-hydroxyglutarate 23.8 1.2E+02 0.0026 25.4 3.9 34 5-38 83-116 (201)
80 PLN02912 oxidoreductase, 2OG-F 23.8 1.5E+02 0.0032 27.0 4.9 40 221-261 253-297 (348)
81 PRK14053 methyltransferase; Pr 23.7 76 0.0017 26.1 2.6 39 6-46 110-148 (194)
82 PF08920 SF3b1: Splicing facto 23.4 55 0.0012 25.8 1.7 22 3-24 83-105 (144)
83 smart00835 Cupin_1 Cupin. This 23.2 1E+02 0.0022 23.9 3.2 26 218-243 73-98 (146)
84 KOG3889 Predicted gamma-butyro 23.2 84 0.0018 27.7 2.9 28 217-244 317-345 (371)
85 PF08111 Pea-VEAacid: Pea-VEAa 22.5 25 0.00054 15.9 -0.2 8 185-192 3-10 (15)
86 PF00877 NLPC_P60: NlpC/P60 fa 22.5 52 0.0011 23.8 1.4 16 219-234 47-62 (105)
87 PRK11171 hypothetical protein; 22.1 1.3E+02 0.0029 26.2 4.1 40 220-260 101-142 (266)
88 PLN02403 aminocyclopropanecarb 21.6 1.8E+02 0.0039 25.9 4.9 37 9-45 21-58 (303)
89 PTZ00273 oxidase reductase; Pr 21.6 1.8E+02 0.004 25.9 5.0 36 10-45 28-64 (320)
90 COG2731 EbgC Beta-galactosidas 21.6 1.6E+02 0.0034 23.5 4.0 35 218-252 110-146 (154)
91 PHA01625 hypothetical protein 21.4 1.6E+02 0.0035 25.0 4.1 47 176-240 200-246 (249)
92 PLN00417 oxidoreductase, 2OG-F 21.3 1.9E+02 0.004 26.4 5.0 37 9-45 65-102 (348)
93 PLN02984 oxidoreductase, 2OG-F 20.9 1.9E+02 0.0042 26.2 5.0 37 9-45 50-87 (341)
94 PLN02997 flavonol synthase 20.8 2E+02 0.0043 25.9 5.0 37 9-45 48-85 (325)
95 TIGR01182 eda Entner-Doudoroff 20.5 1.6E+02 0.0034 24.7 4.0 34 5-38 87-120 (204)
96 PF11491 DUF3213: Protein of u 20.5 77 0.0017 22.4 1.8 30 12-41 31-61 (88)
97 PF12419 DUF3670: SNF2 Helicas 20.5 1.9E+02 0.004 22.5 4.2 38 5-42 82-124 (141)
98 PF11369 DUF3160: Protein of u 20.4 85 0.0018 31.2 2.7 19 7-25 1-19 (630)
99 PRK03606 ureidoglycolate hydro 20.4 2.8E+02 0.006 22.3 5.3 36 217-252 104-139 (162)
100 PLN02485 oxidoreductase 20.4 2E+02 0.0044 25.8 5.1 38 8-45 35-73 (329)
101 cd01076 NAD_bind_1_Glu_DH NAD( 20.3 74 0.0016 27.0 2.1 27 2-28 135-161 (227)
102 cd05313 NAD_bind_2_Glu_DH NAD( 20.2 92 0.002 27.1 2.7 27 2-28 153-179 (254)
No 1
>KOG3290 consensus Peroxisomal phytanoyl-CoA hydroxylase [Lipid transport and metabolism]
Probab=100.00 E-value=3.2e-41 Score=280.25 Aligned_cols=277 Identities=42% Similarity=0.657 Sum_probs=234.6
Q ss_pred CCCCCHHHHHHhhhCcEEEEcCCCCHHHHHHHHHHHHHHHcccCCCCceeeecCcccccccccccccccccceeeccccc
Q 023414 4 AGNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAF 83 (282)
Q Consensus 4 ~~~lt~~~~~~f~~~Gyvvi~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~~e~~~~ 83 (282)
|+.|++.++..|+++||+++++|++.++++.|..++.+++++.+-..+..|.+.++.+..++||++|.+++++|||+.++
T Consensus 1 m~~l~~~~~~~f~~~Gflv~e~f~~~~e~~~L~~~~~~~~~~~~~~l~~~fst~~e~q~~~nyF~~s~dKi~~ffe~~~v 80 (286)
T KOG3290|consen 1 MGCLSPSQLVKFQTDGFLVIEGFLSAEEIDVLSQEQREFYNENDFLLHKIFSTQDEAQGFENYFLESCDKIRFFFEKGAV 80 (286)
T ss_pred CCCCChhHHhhcccCceEEEeccccHHHHHHHHHHHHHHHHhCCceeeeccccHHHHhhHHHHHHHhcceeeeccccccc
Confidence 46789999999999999999999999999999999999999876554578999888889999999999999999999999
Q ss_pred CCCCCcccccccccccccccccccCHHHHhhhcChhHHHHHHHhCCCCccccccceeeeCCCCCCCCcccCCCCCCcCCC
Q 023414 84 GDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP 163 (282)
Q Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~i~~~~~~llg~~~~~~~s~~~~~~p~~~~~~~wH~D~~~~~~~p 163 (282)
..||.+..+..+++|+++|.+|..+|.+..+-...++..++..++-..+.+.++++++|+|+.|+.+..|||..|.+.+|
T Consensus 81 ~kdg~l~kp~~k~~nK~gh~lhd~~p~~~~fty~~k~~~l~~~l~~~~Pvv~qsmyi~K~P~iGg~vt~HqD~~~~p~~P 160 (286)
T KOG3290|consen 81 MKDGSLAKPKEKSINKIGHKLHDLDPDFKLFTYSSKVQVLAVVLGLQGPVVAQSMYIFKPPDIGGEVTPHQDLTFFPWDP 160 (286)
T ss_pred ccccccccCccccHHHhhhhhhhcCcchhheeeeccccceeeeeccCCceeeeEEEEecCCCCCCccCCcccceecccCc
Confidence 99999999999999999999999999998887777777777666322346677887779999999999999999998888
Q ss_pred C-cceEEeeeeeecCCcCceEEEEcCCCCCCccee-eeeCCCCee--ecCCCCCCCCCCeEEeeecCceEEEEeCccccC
Q 023414 164 S-TCTGLWLALEDATIINGCLWAIPGSHKNGLVRR-FIRGEEGVY--FDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQ 239 (282)
Q Consensus 164 ~-~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~Gdvvlf~~~~~H~ 239 (282)
. .++..|+++.+++..||||.++||||+..+..+ +...+++.+ +....+-+......+++|++||.++|++.++|+
T Consensus 161 ~d~~~~~W~Ame~~t~~NGCL~~iPGshk~~l~~~~yp~~sgg~~~~~~~~~~~~~q~~~~~v~mekg~tv~~h~~lvh~ 240 (286)
T KOG3290|consen 161 CDSCVGAWTAMEDITLVNGCLQVIPGSHKGPLLFHRYPDWSGGVNMAYIGIQDYYPQSPRGHVEMEKGDTVFFHPLLVHG 240 (286)
T ss_pred hhhhhhhhhhhhhhhhcCCceEeccccccCcceeeccCCcccccccceeecccCCccCCccceeecCCcEEEEeeeeeec
Confidence 7 788999999999999999999999999976533 233455543 333222334456778899999999999999999
Q ss_pred CCCCCCCCCceEEEEEEEeCCCcccCCCC-ccccCC--CCCCCC
Q 023414 240 SFENQSSKSRHAYSLHVVETDGCRWSQEN-WIRRKV--EPEPLY 280 (282)
Q Consensus 240 s~~n~s~~~R~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~ 280 (282)
|++|+|+..|.|+..+|...+.++|..-+ |.|.+- +++.||
T Consensus 241 S~~NrSe~~R~a~s~h~~~~~~~ky~~~~g~~Qe~~~k~~~~la 284 (286)
T KOG3290|consen 241 SGANRSEGFRKAISCHVAETDNTKYSEVNGTLQETGSKEFPDLA 284 (286)
T ss_pred CCCCcccccccccccceeecCCceeecCCccccCcccccchhcc
Confidence 99999999999999999998668999877 877653 344444
No 2
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=100.00 E-value=4.8e-39 Score=282.53 Aligned_cols=224 Identities=21% Similarity=0.257 Sum_probs=165.4
Q ss_pred CCCCCCHHHHHHhhhCcEEEEcCCCCHHHHHHHHHHHHHHHcccCCCCceeeecCcccccccccccccccccceeecccc
Q 023414 3 LAGNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKA 82 (282)
Q Consensus 3 ~~~~lt~~~~~~f~~~Gyvvi~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~~e~~~ 82 (282)
....||++|+++|+++||++|+++|++++|++|+++++++++....... .. .+ .+.
T Consensus 13 ~~~~Lt~eqi~~f~~dGyvvl~~vls~eev~~lr~~i~~~~~~~~~~~~------~~------~~----------~~~-- 68 (277)
T TIGR02408 13 AAGPLSAKQLQSYERDGFLLLENLFSDDEVAALLAEVERMTRDPAIVRD------EE------AI----------TEP-- 68 (277)
T ss_pred CCCCCCHHHHHHHHHCCEEECcccCCHHHHHHHHHHHHHHHhcccccCC------Cc------ce----------ecC--
Confidence 3567999999999999999999999999999999999999865211000 00 00 000
Q ss_pred cCCCCCcccccccccccccccccccCHHHHhhhcChhHHHHHHHhCCCCccccccceeeeCCCCCCCCcccCCCCCCcCC
Q 023414 83 FGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITE 162 (282)
Q Consensus 83 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~i~~~~~~llg~~~~~~~s~~~~~~p~~~~~~~wH~D~~~~~~~ 162 (282)
.+. .+..+ ..++..++.|.+++.+|+|++++++|+|.+++++++.+++|++..+..++||||..||+..
T Consensus 69 ---~~~-------~~r~~-~~~~~~~~~~~~l~~~p~l~~~~~~LlG~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~ 137 (277)
T TIGR02408 69 ---GSN-------AVRSI-FEVHVLSPILARLVRDPRVANAARQILGSDVYVHQSRINMKPGFKGTGFYWHSDFETWHAE 137 (277)
T ss_pred ---CCC-------ceEEE-ecccccCHHHHHHHcChHHHHHHHHHcCCCeEEEeeeeeecCCCCCCCccCCcCCcccccc
Confidence 000 00000 1234568999999999999999999999999988888888877667778999999998754
Q ss_pred C----CcceEEeeeeeecCCcCceEEEEcCCCCCCcceeeeeCCC-------CeeecCCCC-----CCCCCCeEEeeecC
Q 023414 163 P----STCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEE-------GVYFDRPPP-----SYDQNDFVPIEVKA 226 (282)
Q Consensus 163 p----~~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~~~~-------~~~~~~~~~-----~~~~~~~v~~~~~~ 226 (282)
. ...|++||||+|++++||||+||||||++........... +.....+++ .....+.+.++++|
T Consensus 138 ~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~a 217 (277)
T TIGR02408 138 DGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTFISCVGETPRDNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKA 217 (277)
T ss_pred CCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCcccCCccccchhhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCC
Confidence 2 2589999999999999999999999999843211000000 000011111 01223467889999
Q ss_pred ceEEEEeCccccCCCCCCCCCCceEEEEEEEeCCC
Q 023414 227 GSLVLIHGDLIHQSFENQSSKSRHAYSLHVVETDG 261 (282)
Q Consensus 227 Gdvvlf~~~~~H~s~~n~s~~~R~~~~~~~~~~~~ 261 (282)
||++|||+++||+|++|.|+.+|++++++|++.++
T Consensus 218 GDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~~~ 252 (277)
T TIGR02408 218 GSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSVEN 252 (277)
T ss_pred ceEEEEccccccCCCCCCCCCcceeEEEEEecCCC
Confidence 99999999999999999999999999999987653
No 3
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=100.00 E-value=1.2e-37 Score=273.95 Aligned_cols=229 Identities=20% Similarity=0.262 Sum_probs=168.6
Q ss_pred CCCHHHHHHhhhCcEEEEcCCCCHHHHHHHHHHHHHHHcccCCCCceeeecCcccccccccccccccccceeecccccCC
Q 023414 6 NLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFGD 85 (282)
Q Consensus 6 ~lt~~~~~~f~~~Gyvvi~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~~e~~~~~~ 85 (282)
.||++|+++|+++||++++++|++++|++|++++++.+..... ..+.. . .....
T Consensus 2 ~Lt~eqi~~y~e~Gyv~~~~~~s~eei~~L~~~~~~~l~~~~~---~~~~~------~-------~~~~~---------- 55 (288)
T TIGR01762 2 ALTAEERQSFEKNGFIGPFTLYSPEEMKETWKRIRLRLLDRSA---APYQD------L-------GGTNI---------- 55 (288)
T ss_pred CCCHHHHHHHHhCCEEeCcCCCCHHHHHHHHHHHHHHhhcccc---ccccC------C-------CCcee----------
Confidence 5899999999999999999999999999999999754322110 00100 0 00000
Q ss_pred CCCcccccccccccccccccccCHHHHhhhcChhHHHHHHHhCCCCccccccceeeeCCCCCCCCcccCCCCCCcCCC--
Q 023414 86 DGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-- 163 (282)
Q Consensus 86 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~i~~~~~~llg~~~~~~~s~~~~~~p~~~~~~~wH~D~~~~~~~p-- 163 (282)
..+ ..+..++.|.+++++|+|++++++|+|++++++++.++.|+|+.+ .++||||..||....
T Consensus 56 ---------~~~-----~~~~~~~~~~~l~~~~~l~~~~~~llG~~v~l~~~~~~~K~pg~~-~~~wHQD~~y~~~~~~~ 120 (288)
T TIGR01762 56 ---------ANY-----DRHLDDDFLASHICRPEICHRVESILGPNVLCWRTEFFPKYPGDE-GTDWHQADTFANASGKP 120 (288)
T ss_pred ---------Eee-----eecccCHHHHHHhcCHHHHHHHHHHhCCcEEeeeceeeeeCCCCC-CCCCCccCcccccCCcc
Confidence 001 113457899999999999999999999999999999999999865 479999999886431
Q ss_pred ----------CcceEEeeeeeecCCcCceEEEEcCCCCCCccee----eeeCC-------CC--eee-----c--CCCCC
Q 023414 164 ----------STCTGLWLALEDATIINGCLWAIPGSHKNGLVRR----FIRGE-------EG--VYF-----D--RPPPS 213 (282)
Q Consensus 164 ----------~~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~----~~~~~-------~~--~~~-----~--~~~~~ 213 (282)
...+++||+|+|++.+||||+||||||++..... .+..+ +. ..+ . .++..
T Consensus 121 ~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~viPGSH~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~l~~d~~ 200 (288)
T TIGR01762 121 QLVWPENEEFGGTITVWTAFTDATIENGCMQFIPGTHNSMNYDETRRMTFEPDANNSVVKGGVRRGFFGYDYRQLQIDEN 200 (288)
T ss_pred cccccccCCCCCeEEEEEEcccCCcccCCEEEECCCCCCCCCCcccccccCccccccccccccccccccccchhhccccc
Confidence 2679999999999999999999999999743211 00000 00 000 0 01111
Q ss_pred --CCCCCeEEeeecCceEEEEeCccccCCCCCCCC-CCceEEEEEEEeCCCcccCCCCccccCCC
Q 023414 214 --YDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSS-KSRHAYSLHVVETDGCRWSQENWIRRKVE 275 (282)
Q Consensus 214 --~~~~~~v~~~~~~Gdvvlf~~~~~H~s~~n~s~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (282)
....+.+.++++|||++||+++++|||++|+|+ ..|+++.++|++++-..|...+|++...+
T Consensus 201 ~~~~~~~~v~~~lkaGd~~~f~~~t~HgS~~N~S~~~~R~~~~~ry~~~~~~~~~~~~~~~~~~~ 265 (288)
T TIGR01762 201 WKPDEASAVPMQMKAGQFIIFWSTLMHASYPNSGESQMRMGFASRYVPSFVHVYPDSDHIEEFGG 265 (288)
T ss_pred CCccccceeeeeeCCceEEEECCCceecCCCCCCCCceEEEEEEEEcCCCceEcCCCCcccccCC
Confidence 112357999999999999999999999999996 57999999999986566778888765543
No 4
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=99.97 E-value=4e-31 Score=221.81 Aligned_cols=199 Identities=34% Similarity=0.496 Sum_probs=136.4
Q ss_pred hhhCcEEEEcCCCCHHHHHHHHHHHHHHHccc-CCCC-ceeeecCcccccccccccccccccceeecccccCCCCCcccc
Q 023414 15 FNSQGYVVLESFASDEEIEAMRKQMDHLLDGF-DCST-SSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFGDDGNLKQP 92 (282)
Q Consensus 15 f~~~Gyvvi~~~~~~~~v~~l~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~f~~~~~~i~~~~e~~~~~~~g~~~~~ 92 (282)
|+++||++|+|+|+++++++++++++++.... .... ...+. ..... + .
T Consensus 1 f~~~Gyvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~---~----~ 50 (211)
T PF05721_consen 1 FRRDGYVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFF-----------------------DESFF---G----D 50 (211)
T ss_dssp HHHHSEEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEE-----------------------STSCC---C----T
T ss_pred CcCCcEEEECCcCCHHHHHHHHHHHHHHHhhhhcccccccccc-----------------------ccccc---c----c
Confidence 79999999999999999999999999984332 2111 11110 00000 0 0
Q ss_pred cccccccccccccccCHHHHhhhcCh-hHHHHHHHhCCCCccc---cccce--eeeCCCCCCCC-cccCCCCCCcCCC-C
Q 023414 93 KELSINKVGHALHELDPVFKKFSRSE-KTSNLLHSLGYKRPVD---IQSMY--IFKQPGIGGEV-VPHQDNSFLITEP-S 164 (282)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~p-~i~~~~~~llg~~~~~---~~s~~--~~~~p~~~~~~-~wH~D~~~~~~~p-~ 164 (282)
. ......++.+.+++.++ .+.+++++++|.+... +.+.+ ++++|+.+... +||||..++...| .
T Consensus 51 ----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~~~~~ 122 (211)
T PF05721_consen 51 ----Y----TEQLAKSPNFYDLFLHPPRILDLVRALLGSDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHTDPPE 122 (211)
T ss_dssp ----C----CCCGCCCHHHHHHHHTHHHHHHHHHHHHTSSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTEESSS
T ss_pred ----c----ccccccchhhHHHHhhHHHHHHHHHHhhCCcchhhhhhHHHHHhhhhccccCCCCCCCCCCCcccccCCcc
Confidence 0 00124578999999998 9999999999887664 55666 77888766654 9999999987554 5
Q ss_pred cceEEeeeeeecCCcCceEEEEcCCCCCCcceeeeeCCCCeeec--CCCCCCCCCCeEEeeecCceEEEEeCccccCCCC
Q 023414 165 TCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFD--RPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFE 242 (282)
Q Consensus 165 ~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~Gdvvlf~~~~~H~s~~ 242 (282)
..+++||+|+|+++++|||+|+||||++................ ...........+.+.++|||+|||+++++|+|++
T Consensus 123 ~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~~~~~H~s~~ 202 (211)
T PF05721_consen 123 NQLTVWIALDDITPENGPLEVVPGSHKWGVEPHEERFPEEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFHSRLIHGSGP 202 (211)
T ss_dssp CEEEEEEESS-BBTTCTCEEEETTGCCSCCEEECCCCCCCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEETTSEEEEE-
T ss_pred ceEEEEEeeccCCcccCceEeecCCcCCCcccccccccccccccccccccccccCceEEeecCCCeEEEEcCCccccCCC
Confidence 89999999999999999999999999997543110000000000 0000011356789999999999999999999999
Q ss_pred CCCCCCceE
Q 023414 243 NQSSKSRHA 251 (282)
Q Consensus 243 n~s~~~R~~ 251 (282)
|.|+.+|+|
T Consensus 203 N~s~~~R~a 211 (211)
T PF05721_consen 203 NTSDDPRRA 211 (211)
T ss_dssp B-SSSTEEE
T ss_pred CCCcCcCCC
Confidence 999999986
No 5
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=3.9e-26 Score=194.47 Aligned_cols=217 Identities=21% Similarity=0.284 Sum_probs=138.7
Q ss_pred CCCHHHHHHhhhCcEEEEcCCCC--HHHHHHHHHHHHH-HHcccCCCCceeeecCcccccccccccccccccceeecccc
Q 023414 6 NLNSDNLNFFNSQGYVVLESFAS--DEEIEAMRKQMDH-LLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKA 82 (282)
Q Consensus 6 ~lt~~~~~~f~~~Gyvvi~~~~~--~~~v~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~~e~~~ 82 (282)
..-++.++.+++.||+|++++++ .+-+..+++++.. ...+.. +.++...... +..+
T Consensus 10 ~~~~q~~~~~~~~Gy~Vve~i~d~~~~~la~~r~af~~r~~~e~~----~~~~~~t~~a-----------------~r~a 68 (299)
T COG5285 10 SSYEQIQDAIDEFGYTVVEDVLDTSADSLAAFRAAFYNRVESELG----TEINKSTTVA-----------------ERLA 68 (299)
T ss_pred hhHHHHHHHHhhhhhhhHHhHhhhhhhHHHHHHHHhhccchhhhc----cccccccchh-----------------hhhc
Confidence 34566788999999999999999 8888888888884 222211 1222110000 0000
Q ss_pred cCCCCCcc-cccccccccccccccccCHHHHhhhcChhHHHHHHHh-CCCCccccccceeeeCCCCCCCCcccCCCCCCc
Q 023414 83 FGDDGNLK-QPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSL-GYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLI 160 (282)
Q Consensus 83 ~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~p~i~~~~~~l-lg~~~~~~~s~~~~~~p~~~~~~~wH~D~~~~~ 160 (282)
.++.|.+. ......+..+.. +..+++.. +...++|..+++.+ ++.+..++...-+ ..|+ +.++.||||..++.
T Consensus 69 ~~g~~~~~r~~nd~~~~~~~~-~~r~~~~~--~~a~~~i~~~~~~~~~~~~~v~~~~~~~-~~p~-~~~t~~HqD~~~~~ 143 (299)
T COG5285 69 RNGRGVVDRVDNDRRRIDFTK-LCRKSPEA--LPAAPKILAVTRTLLLRHGHVLWKMPGF-QKPG-AVATRWHQDYPLVS 143 (299)
T ss_pred cCCCcchhhhcCccccccHHH-Hhccchhh--hhhhHHHHHHHHHHhccCCeEEEecCCC-CCCc-cccccccccccccc
Confidence 01111110 000000100000 00111211 33445677777776 4444443332222 2232 23478999998887
Q ss_pred CCCCcceEEeeeeeecCCcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCC-CCCCCCeEEeeecCceEEEEeCccccC
Q 023414 161 TEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPP-SYDQNDFVPIEVKAGSLVLIHGDLIHQ 239 (282)
Q Consensus 161 ~~p~~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~Gdvvlf~~~~~H~ 239 (282)
..++..|++||+|+|++.+||++.+|||||++....++ ++. .|.+...++++|+|||+||||+.+||+
T Consensus 144 ~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~~~~r-----------~d~~~y~~~~~~pv~lekGDallF~~~L~Ha 212 (299)
T COG5285 144 PGYPALVNAWIALCDFTEDNGATLVVPGSHKWDVIPER-----------PDHETYLERNAVPVELEKGDALLFNGSLWHA 212 (299)
T ss_pred CCccceEEEEEeccccccccCceEEEecccccccCCCC-----------CCccchhhhcceeeeecCCCEEEEcchhhhh
Confidence 77778999999999999999999999999999744221 111 344456899999999999999999999
Q ss_pred CCCCCCCCCceEEEEEEEeC
Q 023414 240 SFENQSSKSRHAYSLHVVET 259 (282)
Q Consensus 240 s~~n~s~~~R~~~~~~~~~~ 259 (282)
++.|+|..+|.|++++|+.+
T Consensus 213 A~aNrT~~~R~A~~~~~~~~ 232 (299)
T COG5285 213 AGANRTSADRVALTLQFTVS 232 (299)
T ss_pred hhcCCCCcccceEEEEEeec
Confidence 99999999999999999997
No 6
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=99.01 E-value=1.8e-09 Score=98.11 Aligned_cols=212 Identities=21% Similarity=0.260 Sum_probs=106.5
Q ss_pred CCCCHHHHHHhhhCcEEEEcCCCCHHHHHHHHHHHHHHHcccCCCCceeeecCcccccccccccccccccceeecccccC
Q 023414 5 GNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFG 84 (282)
Q Consensus 5 ~~lt~~~~~~f~~~Gyvvi~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~~e~~~~~ 84 (282)
+.+++++++.+++-|++||+|+|+++++.+..+++.+.++.... . ..|+..
T Consensus 61 ~~~~~~~~~~ir~rG~~VIR~Vvp~~ea~~w~~e~~~Y~~~n~~-~-~~~p~~--------------------------- 111 (416)
T PF07350_consen 61 GGVSEEFLAEIRRRGCVVIRGVVPREEALAWKQELKEYLKANPD-F-KGFPPD--------------------------- 111 (416)
T ss_dssp T---HHHHHHHHHHSEEEECTSS-HHHHHHHHHHHHHHHHHT---T-TTSSS----------------------------
T ss_pred CCCCHHHHHHHHhcCEEEEeCCCCHHHHHHHHHHHHHHHHhCcc-c-CCCCCC---------------------------
Confidence 45899999999999999999999999999999999999987431 1 011100
Q ss_pred CCCCcccccccccccccccccccCHHHHhhhcChhHHHHHHHhCC------CCccc-------cccceeeeCCCCC-CCC
Q 023414 85 DDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGY------KRPVD-------IQSMYIFKQPGIG-GEV 150 (282)
Q Consensus 85 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~i~~~~~~llg------~~~~~-------~~s~~~~~~p~~~-~~~ 150 (282)
...+..+. -+|.=.+.-.||.++.+-+.|.+ .+..+ +-+.+.+++|+.. ...
T Consensus 112 ---------~p~~y~lY-----WS~aQv~AR~HPn~l~~q~~L~~lW~~~~~~~~~~~~~pl~YaDRlRiR~Pg~~~~~L 177 (416)
T PF07350_consen 112 ---------DPQIYELY-----WSPAQVKARSHPNMLAAQRFLNSLWHSEDPDAPIDLDTPLSYADRLRIRPPGDASFGL 177 (416)
T ss_dssp -----------CCE---------BHHHHHHHCSHHHHHHHHHHHTTSB-ETTCESSEEEEE------EEE--TT--B--E
T ss_pred ---------CCcEEEee-----cCHHHHHHhcCHHHHHHHHHHHHhcccCCCCCCcCCCCCcchhhheeecCCCCCCCCC
Confidence 00011111 14566678899999987777742 11111 1244667888865 456
Q ss_pred cccCCCCC--------------------------CcCC------------CC-----cceEEeeeeeecCCcCceEEEEc
Q 023414 151 VPHQDNSF--------------------------LITE------------PS-----TCTGLWLALEDATIINGCLWAIP 187 (282)
Q Consensus 151 ~wH~D~~~--------------------------~~~~------------p~-----~~v~~~i~L~d~~~~~G~l~~ip 187 (282)
+.|.|..- |... +. +..|.|++|+++.+..|.|.|+|
T Consensus 178 gpHvDgGSvERWed~~Y~~vY~~If~G~WE~yDPwd~~~R~~a~~dly~~~g~CS~FR~FQGWlaLS~~~p~eGtL~v~P 257 (416)
T PF07350_consen 178 GPHVDGGSVERWEDPGYRGVYRHIFEGRWEDYDPWDASHRLDATSDLYNGPGACSVFRTFQGWLALSDTGPGEGTLRVLP 257 (416)
T ss_dssp EEEE-S-STHHHH-HHHHHHTHHHHTS-GGG--TTB-TTGGG------TT-----S--SEEEEEESS-B-TTSS-EEE-S
T ss_pred CCcCCCChHHhcCCHhHHHHHHHHhCCChhccCCCCCCCccccchhccCCCCCCceeeccchhhccccCCCCCCeEEEec
Confidence 78999752 1100 11 57899999999999999999999
Q ss_pred CCCCCC---cceeeeeCCC-------------CeeecC--C-------C---CCCC-CCCeEEee-ecCceEEEEeCccc
Q 023414 188 GSHKNG---LVRRFIRGEE-------------GVYFDR--P-------P---PSYD-QNDFVPIE-VKAGSLVLIHGDLI 237 (282)
Q Consensus 188 GSH~~~---~~~~~~~~~~-------------~~~~~~--~-------~---~~~~-~~~~v~~~-~~~Gdvvlf~~~~~ 237 (282)
--..-. +++.|+.... ...+-. | + +.+. ...-+.++ ++|||.|+||+.++
T Consensus 258 ~~~~atAY~lLRPfF~~~~~~~~~~~~~~~~~~~~~~Ga~pg~~q~~~~~~HPhL~L~~~mv~iP~v~PGD~V~WHcD~i 337 (416)
T PF07350_consen 258 LLKLATAYFLLRPFFDPVPSPSESPDYEDDPQTSIFPGAVPGRAQELSPKWHPHLRLEKTMVSIPDVEPGDYVFWHCDLI 337 (416)
T ss_dssp -CC-HHHHHHHGGGSTTS--------------TT--TT--TTS-EE--TTT-HH--HHTT-EE---B-TT-EEEEETT--
T ss_pred chHHHHHHHHhhhhcCCccccccccccccccCCCCCCCcCCCCCccCCcccCCchhhhcccccCCCCCCCCeEEEeCCcc
Confidence 876321 1233332211 000100 0 0 1111 12234444 99999999999999
Q ss_pred cCCCCCC-CCCCceEEEEEEEeC
Q 023414 238 HQSFENQ-SSKSRHAYSLHVVET 259 (282)
Q Consensus 238 H~s~~n~-s~~~R~~~~~~~~~~ 259 (282)
|+..... .....-++++-.+|.
T Consensus 338 H~Vd~~h~g~~~ssV~Yipa~Pl 360 (416)
T PF07350_consen 338 HAVDPEHNGKGDSSVMYIPACPL 360 (416)
T ss_dssp EEE--BSS-SS---EEE--B-EE
T ss_pred ccccccCCCCCCCCeeEecCCCC
Confidence 9988754 557777777777765
No 7
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=98.55 E-value=1.8e-06 Score=73.27 Aligned_cols=89 Identities=21% Similarity=0.110 Sum_probs=62.3
Q ss_pred eeeCCCCCCCCcccCCCCCCcCC--C---CcceEEeeeeeecC-CcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCC
Q 023414 140 IFKQPGIGGEVVPHQDNSFLITE--P---STCTGLWLALEDAT-IINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPS 213 (282)
Q Consensus 140 ~~~~p~~~~~~~wH~D~~~~~~~--p---~~~v~~~i~L~d~~-~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~ 213 (282)
+.+-.. |..+.+|.|..+.... . ...+++.++|.|.. .++|.|.|-..
T Consensus 84 f~rY~~-G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~------------------------- 137 (226)
T PRK05467 84 FNRYEG-GMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDT------------------------- 137 (226)
T ss_pred EEEECC-CCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecC-------------------------
Confidence 444332 3557899999875321 1 14689999999875 46777665211
Q ss_pred CCCCCeEEeeecCceEEEEeCccccCCCCCCCCCCceEEEEEEEe
Q 023414 214 YDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVE 258 (282)
Q Consensus 214 ~~~~~~v~~~~~~Gdvvlf~~~~~H~s~~n~s~~~R~~~~~~~~~ 258 (282)
.....+.+++|++|+|.+.++|.+.+. +...|++++.++.+
T Consensus 138 ---~g~~~Vkp~aG~~vlfps~~lH~v~pV-t~G~R~~~~~Wi~S 178 (226)
T PRK05467 138 ---YGEHRVKLPAGDLVLYPSTSLHRVTPV-TRGVRVASFFWIQS 178 (226)
T ss_pred ---CCcEEEecCCCeEEEECCCCceeeeec-cCccEEEEEecHHH
Confidence 012356778999999999999999996 45779999888754
No 8
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=98.47 E-value=1.8e-05 Score=64.97 Aligned_cols=82 Identities=22% Similarity=0.145 Sum_probs=58.5
Q ss_pred CCCCcccCCCCCCcCCCCcceEEeeeeeecCCcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeEEeeecC
Q 023414 147 GGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKA 226 (282)
Q Consensus 147 ~~~~~wH~D~~~~~~~p~~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 226 (282)
|....+|.|.........+.+++.+||.| ..++|.|.|..... .....+..++
T Consensus 93 g~~~~~H~D~~~~~~~~~r~~T~~~yLn~-~~~GG~~~f~~~~~--------------------------~~~~~v~P~~ 145 (178)
T smart00702 93 GGHYGPHVDNFEDDENGDRIATFLLYLND-VEEGGELVFPGLGL--------------------------MVCATVKPKK 145 (178)
T ss_pred CCcccCcCCCCCCCCCCCeEEEEEEEecc-CCcCceEEecCCCC--------------------------ccceEEeCCC
Confidence 45568999987543222478999999997 35666666643211 1134567789
Q ss_pred ceEEEEeC---ccccCCCCCCCCCCceEEEEEE
Q 023414 227 GSLVLIHG---DLIHQSFENQSSKSRHAYSLHV 256 (282)
Q Consensus 227 Gdvvlf~~---~~~H~s~~n~s~~~R~~~~~~~ 256 (282)
|++|+|.+ .++|++.+..+ ..|+++..+|
T Consensus 146 G~~v~f~~~~~~~~H~v~pv~~-G~r~~~~~W~ 177 (178)
T smart00702 146 GDLLFFPSGRGRSLHGVCPVTR-GSRWAITGWI 177 (178)
T ss_pred CcEEEEeCCCCCccccCCccee-CCEEEEEEEE
Confidence 99999998 59999999765 6799988876
No 9
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=98.05 E-value=0.0002 Score=63.74 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=62.8
Q ss_pred CCCCcccCCCCCCcC----CCCcceEEeeeeeecCCcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeEEe
Q 023414 147 GGEVVPHQDNSFLIT----EPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPI 222 (282)
Q Consensus 147 ~~~~~wH~D~~~~~~----~p~~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (282)
|..+..|.|+..-.. ...+..|+.+||+|+. ++|.+.| |....+..... ...+. . .....+.+
T Consensus 142 Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~-~GGeT~F-P~~~~~~~~~~------~~~~s----~-c~~~gl~V 208 (310)
T PLN00052 142 GQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVD-KGGETVF-PNAEGWENQPK------DDTFS----E-CAHKGLAV 208 (310)
T ss_pred CCCCCCCCCccccccccccCCceeEEEEEEeccCC-CCCceec-CCccccccccc------ccchh----h-hhcCCeEe
Confidence 455689999754211 1237899999999985 5666655 55432211100 00010 0 01235778
Q ss_pred eecCceEEEEeC---------ccccCCCCCCCCCCceEEEEEEEeC
Q 023414 223 EVKAGSLVLIHG---------DLIHQSFENQSSKSRHAYSLHVVET 259 (282)
Q Consensus 223 ~~~~Gdvvlf~~---------~~~H~s~~n~s~~~R~~~~~~~~~~ 259 (282)
..++|++|||.. +++|++.|... ..+++++.++...
T Consensus 209 kPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~-G~Kw~atkWi~~~ 253 (310)
T PLN00052 209 KPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIE-GEKWSAPKWIHIR 253 (310)
T ss_pred ccCcceEEEEeccCCCCCCCcccccCCCeeec-CeEEEEEEeeecc
Confidence 999999999987 57999999764 4588888887664
No 10
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=97.74 E-value=2.8e-05 Score=57.43 Aligned_cols=88 Identities=26% Similarity=0.340 Sum_probs=56.3
Q ss_pred CCCCcccCCCCCCcCCCCcceEEeeeeeecC--CcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeEEeee
Q 023414 147 GGEVVPHQDNSFLITEPSTCTGLWLALEDAT--IINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEV 224 (282)
Q Consensus 147 ~~~~~wH~D~~~~~~~p~~~v~~~i~L~d~~--~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 224 (282)
|..+.||.|..+ .+...+++.+||.+.. .++|.|++.+.. ....... .+ ... .+ ..
T Consensus 9 G~~~~~H~D~~~---~~~~~~t~llyL~~~~~~~~GG~l~~~~~~-~~~~~~~--------~~-------~~~-~~--~p 66 (100)
T PF13640_consen 9 GGFFGPHTDNSY---DPHRRVTLLLYLNDPEWEFEGGELEFYPSK-DSDDVSR--------EV-------EDF-DI--VP 66 (100)
T ss_dssp TEEEEEEESSSC---CCSEEEEEEEESS-CS-HCEE--EEETTTS--TSSTCE--------EE-------GGG-SE--E-
T ss_pred CCEEeeeECCCC---CCcceEEEEEEECCCCcccCCCEEEEeccc-cCCCcce--------EE-------Eec-cc--cC
Confidence 345789999865 3457899999999765 567777877664 2100000 01 101 11 29
Q ss_pred cCceEEEEeC-ccccCCCCCCCCCCceEEEEEE
Q 023414 225 KAGSLVLIHG-DLIHQSFENQSSKSRHAYSLHV 256 (282)
Q Consensus 225 ~~Gdvvlf~~-~~~H~s~~n~s~~~R~~~~~~~ 256 (282)
++|++|+|.+ .++|+..+......|+++...|
T Consensus 67 ~~g~~v~F~~~~~~H~v~~v~~~~~R~~l~~~~ 99 (100)
T PF13640_consen 67 KPGRLVIFPSDNSLHGVTPVGEGGRRYSLTFWF 99 (100)
T ss_dssp BTTEEEEEESCTCEEEEEEE-EESEEEEEEEEE
T ss_pred CCCEEEEEeCCCCeecCcccCCCCCEEEEEEEE
Confidence 9999999999 9999999985567788777766
No 11
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=97.40 E-value=0.00065 Score=50.37 Aligned_cols=79 Identities=18% Similarity=0.043 Sum_probs=41.0
Q ss_pred ceEEeeeeeecCCcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeEEeeecCceEEEEeCccccCCCCCCC
Q 023414 166 CTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQS 245 (282)
Q Consensus 166 ~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gdvvlf~~~~~H~s~~n~s 245 (282)
.++..+||+ +.++.|.+.+.-........... ... ...........+..++||+|||-+.+.|+..+|.+
T Consensus 22 ~~SgVyYv~-~p~~~~~l~f~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~p~~G~lvlFPs~l~H~v~p~~~ 91 (101)
T PF13759_consen 22 WLSGVYYVQ-VPEGSGPLRFHDPRGSFSFGAPF-------DNY--DQNDLNSPYYIVEPEEGDLVLFPSWLWHGVPPNNS 91 (101)
T ss_dssp SEEEEEECE---TTS-SEEEE-TTCCCGTTS-----------T--TTTCCC-SEEEE---TTEEEEEETTSEEEE----S
T ss_pred CEEEEEEEE-CCCCCCceeeeCCCccceecccc-------ccc--ccCcccCceEEeCCCCCEEEEeCCCCEEeccCcCC
Confidence 566666665 56677888887443222111100 000 00112255778999999999999999999999999
Q ss_pred CCCceEEEE
Q 023414 246 SKSRHAYSL 254 (282)
Q Consensus 246 ~~~R~~~~~ 254 (282)
+..|.++.+
T Consensus 92 ~~~Risisf 100 (101)
T PF13759_consen 92 DEERISISF 100 (101)
T ss_dssp SS-EEEEEE
T ss_pred CCCEEEEEc
Confidence 999987754
No 12
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=97.26 E-value=0.008 Score=50.29 Aligned_cols=132 Identities=18% Similarity=0.207 Sum_probs=75.9
Q ss_pred cCHHHHhhhc--ChhHHHHHHHhCCC-Ccc-c-cccceeeeCCCCCCCCcccCCCCCCcCCCCcceEEeeeeeecCCcCc
Q 023414 107 LDPVFKKFSR--SEKTSNLLHSLGYK-RPV-D-IQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIING 181 (282)
Q Consensus 107 ~~~~~~~l~~--~p~i~~~~~~llg~-~~~-~-~~s~~~~~~p~~~~~~~wH~D~~~~~~~p~~~v~~~i~L~d~~~~~G 181 (282)
..|.|..|.. .+.+..+++++..+ +.. + +++.-.++.+. |+....|.- |.-.++..+||+- ...+|
T Consensus 62 ~~p~f~~L~~~l~~~v~~~~~~l~~d~~~~~l~i~~~W~ni~~~-Gg~h~~H~H-------p~~~lSgvyYl~~-p~~~g 132 (201)
T TIGR02466 62 RFPEFAELVQQLDKHVAKFARDLEGDNDGLELRIQKAWVNILPQ-GGTHSPHLH-------PGSVISGTYYVQT-PENCG 132 (201)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHcCCCccccceEEeeEeEEEcCC-CCccCceEC-------CCceEEEEEEEeC-CCCCC
Confidence 4588888764 46788888888642 111 1 22222233322 222233322 2335777778764 45567
Q ss_pred eEEEE-cCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeEEeeecCceEEEEeCccccCCCCCCCCCCceEEEEEEE
Q 023414 182 CLWAI-PGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVV 257 (282)
Q Consensus 182 ~l~~i-pGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gdvvlf~~~~~H~s~~n~s~~~R~~~~~~~~ 257 (282)
.+.+. |..+....... ..+.........+.+..++|++|||-+.++|++.+|.++..|.++.+.+.
T Consensus 133 ~~~f~~p~~~~~~~~~~----------~~~~~~~~~~~~~~v~P~~G~lvlFPS~L~H~v~p~~~~~~RISiSFNl~ 199 (201)
T TIGR02466 133 AIKFEDPRLDDMMAAPM----------RIPNAKRAVQRFVYVPPQEGRVLLFESWLRHEVPPNESEEERISVSFNYA 199 (201)
T ss_pred ceeEecCcchhhhcccc----------ccCccccccCccEEECCCCCeEEEECCCCceecCCCCCCCCEEEEEEeeE
Confidence 77664 33322110000 00000011233556778999999999999999999999999998887663
No 13
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=96.98 E-value=0.012 Score=47.87 Aligned_cols=85 Identities=21% Similarity=0.202 Sum_probs=55.5
Q ss_pred CCCCcccCCCCCCcCCCC------cceEEeeeeeecCCcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeE
Q 023414 147 GGEVVPHQDNSFLITEPS------TCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFV 220 (282)
Q Consensus 147 ~~~~~wH~D~~~~~~~p~------~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 220 (282)
|..+..|+|..-....|. .-+++.+.|+|-..-+|+=.|+-+ .|. ..
T Consensus 92 g~~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~d------------------------tYg---~h 144 (229)
T COG3128 92 GDFFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYDGGELVVND------------------------TYG---NH 144 (229)
T ss_pred CCcccccccCcccccCCCCCceeEeeeeeeeecCCccccCCceEEEec------------------------ccc---ce
Confidence 455789999876442222 235666667665433333222221 122 35
Q ss_pred EeeecCceEEEEeCccccCCCCCCCCCCceEEEEEEEeC
Q 023414 221 PIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVET 259 (282)
Q Consensus 221 ~~~~~~Gdvvlf~~~~~H~s~~n~s~~~R~~~~~~~~~~ 259 (282)
.+.|+|||+|+|-+..+|...+. +...|.+.++++.+.
T Consensus 145 ~VklPAGdLVlypStSlH~VtPV-TRg~R~asffW~qsl 182 (229)
T COG3128 145 RVKLPAGDLVLYPSTSLHEVTPV-TRGERFASFFWIQSL 182 (229)
T ss_pred EEeccCCCEEEcccccceecccc-ccCceEEEeeehHHH
Confidence 67889999999999999999996 566788888887654
No 14
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=95.68 E-value=0.15 Score=42.09 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=27.4
Q ss_pred CCeEEeeecCceEEEEeCc---cccCCCCCCC--------CCCceEEEEE
Q 023414 217 NDFVPIEVKAGSLVLIHGD---LIHQSFENQS--------SKSRHAYSLH 255 (282)
Q Consensus 217 ~~~v~~~~~~Gdvvlf~~~---~~H~s~~n~s--------~~~R~~~~~~ 255 (282)
...+.+.++.||+++|... .+|+..+... ...|.++++|
T Consensus 145 ~~~~~~~L~~gsl~vm~g~~r~~~H~I~~~~~~~~~~~~~~~~RislTfR 194 (194)
T PF13532_consen 145 DEPIEVPLPPGSLLVMSGEARYDWHGIPPVKKDTHPSHYVRGRRISLTFR 194 (194)
T ss_dssp S-EEEEEE-TTEEEEEETTHHHHEEEE-S-SCEEEESTEE-S-EEEEEEE
T ss_pred CccEEEEcCCCCEEEeChHHhhheeEcccccCCccccccCCCCEEEEEeC
Confidence 3578899999999999976 4799887765 2489998876
No 15
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=95.49 E-value=0.78 Score=38.76 Aligned_cols=184 Identities=18% Similarity=0.225 Sum_probs=98.9
Q ss_pred HHHhhhCcEEEEcCCCCHHHHHHHHHHHHHHHcccCCCCceeeecCcccccccccccccccccceeecccccCCCCCccc
Q 023414 12 LNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFGDDGNLKQ 91 (282)
Q Consensus 12 ~~~f~~~Gyvvi~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~~e~~~~~~~g~~~~ 91 (282)
+--..+.|++++.+|+-.+.=..+.++++.+.....-.. ++.-+.+....++ -++++|.+. + |
T Consensus 47 vp~mne~g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~d-gql~~~~~~~~k~----iRgd~i~wi-~-------G---- 109 (280)
T KOG3710|consen 47 VPCMNEYGICVVDNFLGSETGKFILKEVEALYETGAFRD-GQLVSPDAFHSKD----IRGDKITWV-G-------G---- 109 (280)
T ss_pred hhhhhhcceEEEechhhHHHHHHHHHHHHHHHhccCccC-ceeccCcCCcchh----hccCCceEe-c-------C----
Confidence 345678999999999999999999999998876532111 1111111000000 011222221 1 0
Q ss_pred ccccccccccccccccCHHHHhhhc-----ChhHHHHHHHhCCCCccccccceee-eCCCCCCCCcccCCCCCCcCCCCc
Q 023414 92 PKELSINKVGHALHELDPVFKKFSR-----SEKTSNLLHSLGYKRPVDIQSMYIF-KQPGIGGEVVPHQDNSFLITEPST 165 (282)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~-----~p~i~~~~~~llg~~~~~~~s~~~~-~~p~~~~~~~wH~D~~~~~~~p~~ 165 (282)
..|....+.. ++.++..... ++.. ++-.+..++ --||.|...--|.|.+. ...+
T Consensus 110 ---------------~e~gc~~i~~L~s~~d~~i~h~~~r-~~~~-~~gRtkAMVAcYPGNGtgYVrHVDNP~---gDGR 169 (280)
T KOG3710|consen 110 ---------------NEPGCETIMLLPSPIDSVILHCNGR-LGSY-IIGRTKAMVACYPGNGTGYVRHVDNPH---GDGR 169 (280)
T ss_pred ---------------CCCCccceeeecccchhhhhhhccc-cccc-cccceeEEEEEecCCCceeeEeccCCC---CCce
Confidence 1111111111 1112221111 2221 111333333 35777766667999876 3348
Q ss_pred ceEEeeeee---ecCCcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeEEeeecCceEEEEeCc--cccCC
Q 023414 166 CTGLWLALE---DATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGD--LIHQS 240 (282)
Q Consensus 166 ~v~~~i~L~---d~~~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gdvvlf~~~--~~H~s 240 (282)
+||+..||. |+...+|.|++-|..-. ....++.+.+-+|||-+. -.|-.
T Consensus 170 cITcIYYlNqNWD~kv~Gg~Lri~pe~~~--------------------------~~adieP~fdrLlffwSdrrnPhev 223 (280)
T KOG3710|consen 170 CITCIYYLNQNWDVKVHGGILRIFPEGST--------------------------TFADIEPKFDRLLFFWSDRRNPHEV 223 (280)
T ss_pred EEEEEEEcccCcceeeccceeEeccCCCC--------------------------cccccCcCCCeEEEEEecCCCcccc
Confidence 999999996 34555666655443111 112244555667777554 46777
Q ss_pred CCCCCCCCceEEEEEEEeCC
Q 023414 241 FENQSSKSRHAYSLHVVETD 260 (282)
Q Consensus 241 ~~n~s~~~R~~~~~~~~~~~ 260 (282)
.|- -..|++++++|....
T Consensus 224 ~Pa--~~tryaitvwyfda~ 241 (280)
T KOG3710|consen 224 QPA--YATRYAITVWYFDAK 241 (280)
T ss_pred ccc--cccceEEEEEEeccc
Confidence 764 378999999999884
No 16
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=93.50 E-value=0.5 Score=38.50 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=52.2
Q ss_pred CCCcccCCCCCCcCCCCcceEEeeeeeecCCcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeEEeeecCc
Q 023414 148 GEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAG 227 (282)
Q Consensus 148 ~~~~wH~D~~~~~~~p~~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G 227 (282)
..++.|+|..- +....++++.|.--. .+|+..++|+ .. + ...-+.+.+.+|
T Consensus 85 r~t~~HrD~~~----~~~~~~~~~t~~~gd-~~~g~l~lp~------~~---------------~---~~~g~~~~~~~G 135 (171)
T PF12851_consen 85 RCTHSHRDTHN----MPNGYDVLCTLGRGD-YDGGRLELPG------LD---------------P---NILGVAFAYQPG 135 (171)
T ss_pred cCccceecCCC----CCCCeEEEEecCCcc-ccCceEeccc------cc---------------c---ccCCEEEecCCC
Confidence 45688999743 224566666553222 4566667776 10 0 123578899999
Q ss_pred eEEEEeCc-cccCCCCCCC----CCCceEEEEE
Q 023414 228 SLVLIHGD-LIHQSFENQS----SKSRHAYSLH 255 (282)
Q Consensus 228 dvvlf~~~-~~H~s~~n~s----~~~R~~~~~~ 255 (282)
|||++.++ ..||..+-.+ +..|+++.+-
T Consensus 136 tVl~~~~~~~~Hgvtpv~~~~~~~~~R~slvfy 168 (171)
T PF12851_consen 136 TVLIFCAKRELHGVTPVESPNRNHGTRISLVFY 168 (171)
T ss_pred cEEEEcccceeeecCcccCCCCCCCeEEEEEEE
Confidence 99999999 8999988664 3678776543
No 17
>PHA02813 hypothetical protein; Provisional
Probab=93.45 E-value=0.67 Score=41.69 Aligned_cols=70 Identities=21% Similarity=0.151 Sum_probs=48.7
Q ss_pred CCCCcccCCCCCCcCCCCcceEEeeeeeecCCcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeEEeeecC
Q 023414 147 GGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKA 226 (282)
Q Consensus 147 ~~~~~wH~D~~~~~~~p~~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 226 (282)
|..+.||+|+.+........+++.+||.+. .++|.+.+.-+ + ... +..
T Consensus 104 Gq~F~~H~Dg~~~r~k~~s~~tLLLYLN~~-~~GGeT~f~~~--------------------------~-~ts----I~~ 151 (354)
T PHA02813 104 GDFFNNHRDFIHFKSKNCYCYHLVLYLNNT-SKGGNTNIHIK--------------------------D-NTI----FST 151 (354)
T ss_pred CcccCcccCCceeecCCceEEEEEEEEecc-CCCCceEEEcC--------------------------C-Cce----Eee
Confidence 455689999988654334678899999886 44454443211 0 111 339
Q ss_pred ceEEEEeCccccCCCCCCCCCC
Q 023414 227 GSLVLIHGDLIHQSFENQSSKS 248 (282)
Q Consensus 227 Gdvvlf~~~~~H~s~~n~s~~~ 248 (282)
|.+|+|+..++|.|.+-.++..
T Consensus 152 g~dlLFdh~l~Heg~~V~sG~K 173 (354)
T PHA02813 152 KNDVLFDKTLNHSSDIITDGEK 173 (354)
T ss_pred cceEEEecccccCCcEeccCeE
Confidence 9999999999999998876543
No 18
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=92.64 E-value=0.57 Score=42.81 Aligned_cols=80 Identities=20% Similarity=0.220 Sum_probs=55.1
Q ss_pred CCCCcccCCCCCCcCCCCcceEEeeeeeecCCcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeEEeeecC
Q 023414 147 GGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKA 226 (282)
Q Consensus 147 ~~~~~wH~D~~~~~~~p~~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 226 (282)
|..+.||+|..+......-.+++.+||.+. .++|.+.+.-+ ....+..+.
T Consensus 113 Gq~F~~H~Dg~~~rs~e~s~~tLLLYLNd~-~~GGET~f~~~-----------------------------~~~sI~pks 162 (418)
T PHA02869 113 GDYFARHRDFSTVFSKNIICVHLLLYLEQP-ETGGETVIYID-----------------------------NNTSVKLKT 162 (418)
T ss_pred CCcccccccCceecCCCEEEEEEEEEEecc-CCCCceEEEeC-----------------------------CCceEecCC
Confidence 455789999987655445678999999986 44454444220 012367788
Q ss_pred ceEEEEeCccccCCCCCCCCC---CceEEEEEEEe
Q 023414 227 GSLVLIHGDLIHQSFENQSSK---SRHAYSLHVVE 258 (282)
Q Consensus 227 Gdvvlf~~~~~H~s~~n~s~~---~R~~~~~~~~~ 258 (282)
| |+|+..++|.|....++. -|.-+.+++..
T Consensus 163 g--LLFdh~l~Heg~~V~sG~KyVartDVmyr~k~ 195 (418)
T PHA02869 163 D--HLFDKTIEHESITVESGRKCVALFDVLLEKKL 195 (418)
T ss_pred C--eEeccccccCCcEeecCeEEEEEEEEEEEecc
Confidence 8 999999999999887754 45555566653
No 19
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=91.65 E-value=3.5 Score=34.83 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=29.7
Q ss_pred eEEeeecCceEEEEeCc---cccCCCCCCCC------CCceEEEEEE
Q 023414 219 FVPIEVKAGSLVLIHGD---LIHQSFENQSS------KSRHAYSLHV 256 (282)
Q Consensus 219 ~v~~~~~~Gdvvlf~~~---~~H~s~~n~s~------~~R~~~~~~~ 256 (282)
...+.++.||++++... .+|+..+.... ..|.++++|.
T Consensus 166 ~~~l~L~~Gdllvm~G~sr~~~HgVp~~~~~~~p~~g~~RINLTFR~ 212 (213)
T PRK15401 166 LQRILLEHGDVVVWGGPSRLRYHGILPLKAGEHPLTGECRINLTFRK 212 (213)
T ss_pred eEEEEeCCCCEEEECchHhheeccCCcCCCCcCCCCCCCeEEEEeEc
Confidence 46789999999999876 58998765432 3799998874
No 20
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.51 E-value=2.1 Score=35.08 Aligned_cols=105 Identities=12% Similarity=0.027 Sum_probs=63.7
Q ss_pred CHHHHhhhcChhHHHHHHHhC-------CCCccccccceeeeCCCCCC--CCcccCCCCCCcCCCCcceEEeeeeeecCC
Q 023414 108 DPVFKKFSRSEKTSNLLHSLG-------YKRPVDIQSMYIFKQPGIGG--EVVPHQDNSFLITEPSTCTGLWLALEDATI 178 (282)
Q Consensus 108 ~~~~~~l~~~p~i~~~~~~ll-------g~~~~~~~s~~~~~~p~~~~--~~~wH~D~~~~~~~p~~~v~~~i~L~d~~~ 178 (282)
.|....++.+|...++|..+. +.++.++|-++-..+...|- .-..|||..-| | +.+-++.-+.
T Consensus 87 epl~da~~~~~~~r~l~aaf~~~~~L~p~~EIe~HQ~Ri~a~~de~glpaPEG~HqDG~D~-------I-~I~~vDR~NI 158 (226)
T COG4340 87 EPLTDAIADHPVTRGLIAAFELFDPLSPTSEIEMHQFRIEARTDEQGLPAPEGAHQDGVDW-------I-IIMLVDRQNI 158 (226)
T ss_pred eehhhhhhcCchHHHHHHHHHhcCCCCCcceeeeEEEEEEeecCCcCCCCCccccccCccE-------E-EEEEeeeccc
Confidence 577777888998888888763 23444444333333333321 23589998754 2 1223455577
Q ss_pred cCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeEEeeecCceEEEEe-CccccCCCCCCC
Q 023414 179 INGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIH-GDLIHQSFENQS 245 (282)
Q Consensus 179 ~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gdvvlf~-~~~~H~s~~n~s 245 (282)
.+|-+.+.--+|..+ ...-.+.+|++++.+ +++||+..+...
T Consensus 159 ~gGet~lY~~~~~~p-------------------------~f~kvl~pGe~~~l~Dh~~~H~~tpi~p 201 (226)
T COG4340 159 DGGETDLYAPDGASP-------------------------GFFKVLAPGEAVFLDDHRVLHGVTPIVP 201 (226)
T ss_pred cCceEEEEccCCCCc-------------------------ceEEeccCCcEEEeccchhcccccceec
Confidence 777665544443221 123467889988765 559999999864
No 21
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=84.11 E-value=1.9 Score=39.59 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=33.4
Q ss_pred CeEEeeecCceEEEEeCc-cccCCCCCCCCCCceEEEEEEEeCC
Q 023414 218 DFVPIEVKAGSLVLIHGD-LIHQSFENQSSKSRHAYSLHVVETD 260 (282)
Q Consensus 218 ~~v~~~~~~Gdvvlf~~~-~~H~s~~n~s~~~R~~~~~~~~~~~ 260 (282)
-.+...+++||+++||.+ ++||..+......+|-+...|...|
T Consensus 312 ~~~~~~l~pGd~vi~DN~rvlH~R~af~~~~~~R~L~g~Y~d~d 355 (366)
T TIGR02409 312 FKFTFKLEPGDLVLFDNTRLLHARDAFSNPEGKRHLQGCYADWD 355 (366)
T ss_pred cEEEEEcCCCcEEEEeceEEeecCCCcCCCCCceEEEEEEEccH
Confidence 357889999999999997 8999988763333445788888764
No 22
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=83.97 E-value=27 Score=32.19 Aligned_cols=186 Identities=15% Similarity=0.129 Sum_probs=101.2
Q ss_pred HHHHHhhhCc---EEEEcCCCCHHHHHHHHHHHHHHHcccCCCCceeeecCcccccccccccccccccceeecccccCCC
Q 023414 10 DNLNFFNSQG---YVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFGDD 86 (282)
Q Consensus 10 ~~~~~f~~~G---yvvi~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~~e~~~~~~~ 86 (282)
...+.|+.+| .++|+++++++.++.+|.++...+.=....+ ..| ++ + ++
T Consensus 25 ~~kk~~ekngPf~h~~i~~~vnd~~l~~vrkei~~~~~f~~k~t-Dly--------------------r~-~------Qt 76 (476)
T KOG3844|consen 25 PLKKEYEKNGPFNHFIIRDFVNDSLLRVVRKEIHGSIHFTEKET-DLY--------------------RV-L------QT 76 (476)
T ss_pred hHhhhhhccCCCcceeeeccCCHHHHHHHHHHHhhccchhhhcc-hhh--------------------he-e------cc
Confidence 3456677766 6789999999999999999886543221111 011 00 0 11
Q ss_pred CCcccccccccccccccccccCHHHHhhhcChhHHHHHHHhCCCCccccccceeeeCCCCCCCCcccCCCCCCcCCCCcc
Q 023414 87 GNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTC 166 (282)
Q Consensus 87 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~i~~~~~~llg~~~~~~~s~~~~~~p~~~~~~~wH~D~~~~~~~p~~~ 166 (282)
|-+ .+++.+. ....-.|++.+. ....+-++.+-|...--..++-...- ..+...-.|-|-.- .+.
T Consensus 77 gdL-----~nl~~le---~p~lf~~r~~Ly-ke~r~~~q~vtg~~s~sk~Dms~s~Y-~kgd~LL~HDD~ie-----tRr 141 (476)
T KOG3844|consen 77 GDL-----ANLEGLE---FPALFSFRDSLY-KEARGEIQDVTGGLSTSKIDMSGSYY-RKGDHLLCHDDVIE-----TRR 141 (476)
T ss_pred ccc-----ccccccc---chhHHHHHHHHH-HHHHHHHHhccCccccceeeeceeee-eccceecccccccc-----ceE
Confidence 211 1111110 011123555555 67777777775432110111100011 12333456666532 478
Q ss_pred eEEeeeeeecC---CcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeEEeeecCceEEEEeCc--cccCCC
Q 023414 167 TGLWLALEDAT---IINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGD--LIHQSF 241 (282)
Q Consensus 167 v~~~i~L~d~~---~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gdvvlf~~~--~~H~s~ 241 (282)
+.+.+||.|.. .-+|.|+..|---..- +..-...++.+-..++||--. .+|...
T Consensus 142 iaFilYL~~~Dwds~~GG~L~Lf~~d~~~~---------------------P~s~~asl~P~~Nql~fFeVsp~SFH~V~ 200 (476)
T KOG3844|consen 142 IAFILYLVDPDWDSEYGGELRLFPDDCPSQ---------------------PKSVAASLEPQWNQLVFFEVSPISFHDVE 200 (476)
T ss_pred EEEEEEecCcccccccCceeEecccccccC---------------------ccchhhccCcccceEEEEEecccchhhHH
Confidence 88999998876 3377777655422111 000112344455566676544 799999
Q ss_pred CCCCCCCceEEEEEEEeC
Q 023414 242 ENQSSKSRHAYSLHVVET 259 (282)
Q Consensus 242 ~n~s~~~R~~~~~~~~~~ 259 (282)
.-.++.+|+++..+|-..
T Consensus 201 Ev~sde~RlSIsGWfH~p 218 (476)
T KOG3844|consen 201 EVLSDEPRLSISGWFHFP 218 (476)
T ss_pred HHhccCcceeEeeeecCC
Confidence 999999999999999654
No 23
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=83.77 E-value=1.9 Score=31.07 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=39.3
Q ss_pred CCCCCCcccCCCCCCcCCCCcceEEeeeeeecCCcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeEEeee
Q 023414 145 GIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEV 224 (282)
Q Consensus 145 ~~~~~~~wH~D~~~~~~~p~~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 224 (282)
..+....+|.|.. ...+++.+. .+.|+|+|.... .+. .. ..... .+.+
T Consensus 13 ~~~~~~~~H~D~~------~~~~Til~~-----~~~~gL~~~~~~-------~~~--------~v----~~~~~--~~~v 60 (98)
T PF03171_consen 13 ENGVGIGPHTDDE------DGLLTILFQ-----DEVGGLQVRDDG-------EWV--------DV----PPPPG--GFIV 60 (98)
T ss_dssp CGCEEEEEEEES--------SSEEEEEE-----TSTS-EEEEETT-------EEE--------E--------TT--CEEE
T ss_pred ccCCceeCCCcCC------CCeEEEEec-----ccchheeccccc-------ccc--------Cc----cCccc--eeee
Confidence 3445578999983 124555444 566778887554 110 00 00011 3455
Q ss_pred cCceEEE-----EeCccccCCCCCCCCCCceEEEEEEEe
Q 023414 225 KAGSLVL-----IHGDLIHQSFENQSSKSRHAYSLHVVE 258 (282)
Q Consensus 225 ~~Gdvvl-----f~~~~~H~s~~n~s~~~R~~~~~~~~~ 258 (282)
..||++. .-...+|+..+.. ...|+++.+.+.|
T Consensus 61 ~~G~~l~~~t~g~~~~~~HrV~~~~-~~~R~s~~~f~~p 98 (98)
T PF03171_consen 61 NFGDALEILTNGRYPATLHRVVPPT-EGERYSLTFFLRP 98 (98)
T ss_dssp EEBHHHHHHTTTSS----EEEE--S-TS-EEEEEEEEE-
T ss_pred eceeeeecccCCccCCceeeeEcCC-CCCEEEEEEEECC
Confidence 5666432 1223789988864 6789998888764
No 24
>KOG3290 consensus Peroxisomal phytanoyl-CoA hydroxylase [Lipid transport and metabolism]
Probab=82.13 E-value=0.84 Score=39.38 Aligned_cols=43 Identities=14% Similarity=0.359 Sum_probs=39.3
Q ss_pred CCCCHHHHHHhhhCcEEEEcCCCCHHHHHHHHHHHHHHHcccC
Q 023414 5 GNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFD 47 (282)
Q Consensus 5 ~~lt~~~~~~f~~~Gyvvi~~~~~~~~v~~l~~~~~~~~~~~~ 47 (282)
..|+.++++.+.++||.+++++.+.++++..++.+.+..++..
T Consensus 30 ~~L~~~~~~~~~~~~~~l~~~fst~~e~q~~~nyF~~s~dKi~ 72 (286)
T KOG3290|consen 30 DVLSQEQREFYNENDFLLHKIFSTQDEAQGFENYFLESCDKIR 72 (286)
T ss_pred HHHHHHHHHHHHhCCceeeeccccHHHHhhHHHHHHHhcceee
Confidence 4588999999999999999999999999999999999888753
No 25
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=78.75 E-value=3.6 Score=36.11 Aligned_cols=40 Identities=8% Similarity=-0.002 Sum_probs=31.4
Q ss_pred CeEEeeecCceEEEEeCc-cccCCCCCCCCCCceEEEEEEE
Q 023414 218 DFVPIEVKAGSLVLIHGD-LIHQSFENQSSKSRHAYSLHVV 257 (282)
Q Consensus 218 ~~v~~~~~~Gdvvlf~~~-~~H~s~~n~s~~~R~~~~~~~~ 257 (282)
-.+....++||+|+||.+ ++|++...-.+..|.+.-+...
T Consensus 232 ~~~~~~w~~GD~viwDNr~~~H~a~~~~~~~~R~~~R~~v~ 272 (277)
T PRK09553 232 FQVRWRWQPNDVAIWDNRVTQHYANADYLPQRRIMHRATIL 272 (277)
T ss_pred eEEEEecCCCCEEEEcCcceeEecccCCCCCceEEEEEeec
Confidence 357788999999999999 7999987665677876665543
No 26
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=78.41 E-value=22 Score=28.88 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=16.8
Q ss_pred eEEeeecCceEEEEeCc---cccC
Q 023414 219 FVPIEVKAGSLVLIHGD---LIHQ 239 (282)
Q Consensus 219 ~v~~~~~~Gdvvlf~~~---~~H~ 239 (282)
.+.+.++.||++++... .+||
T Consensus 145 ~~~l~L~sGsllvM~G~sR~~~Hg 168 (169)
T TIGR00568 145 PKRLRLHSGDVVIMGGESRLAFHG 168 (169)
T ss_pred eEEEEeCCCCEEEECCchhccccC
Confidence 56789999999999875 3554
No 27
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=76.84 E-value=5 Score=27.25 Aligned_cols=30 Identities=20% Similarity=-0.004 Sum_probs=21.3
Q ss_pred CCCCCCcccCCCCCCcCCCCcceEEeeeee
Q 023414 145 GIGGEVVPHQDNSFLITEPSTCTGLWLALE 174 (282)
Q Consensus 145 ~~~~~~~wH~D~~~~~~~p~~~v~~~i~L~ 174 (282)
..+..+.||.|...-.......+++.|||.
T Consensus 19 ~~g~~~~~H~D~~~~~~~~~r~~t~llYLn 48 (70)
T PF13661_consen 19 RRGDFFGWHVDADPSSSGKRRFLTLLLYLN 48 (70)
T ss_pred CCCCEeeeeEcCCccccccceeEEEEEEec
Confidence 345667999998763322236789999998
No 28
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=76.64 E-value=54 Score=29.08 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.7
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHHHHcc
Q 023414 19 GYVVLESFASDEEIEAMRKQMDHLLDG 45 (282)
Q Consensus 19 Gyvvi~~~~~~~~v~~l~~~~~~~~~~ 45 (282)
.-++.+||+++++++.|......-+..
T Consensus 98 ~~~~yhd~ls~~e~d~l~~lak~~l~~ 124 (289)
T KOG1591|consen 98 RVVLYHDFLSDEECDHLISLAKPKLER 124 (289)
T ss_pred ceEeehhcCCHHHHHHHHHhhhhhhhc
Confidence 357789999999999999988876655
No 29
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=75.84 E-value=5.1 Score=34.69 Aligned_cols=37 Identities=11% Similarity=0.269 Sum_probs=27.8
Q ss_pred CeEEeeecCceEEEEeCc-cccCCCCCCCC--CCceEEEE
Q 023414 218 DFVPIEVKAGSLVLIHGD-LIHQSFENQSS--KSRHAYSL 254 (282)
Q Consensus 218 ~~v~~~~~~Gdvvlf~~~-~~H~s~~n~s~--~~R~~~~~ 254 (282)
..+...+++||+||||.+ ++||...-... ..|+..-+
T Consensus 218 ~~~~~~l~~Gdivi~DN~r~lHgR~~f~~~~~~~R~L~r~ 257 (262)
T cd00250 218 NQLTVKLEPGDLLIFDNRRVLHGRTAFSPRYGGDRWLKGC 257 (262)
T ss_pred hEEEEEcCCCCEEEEechhhhcCCCCCCCCCCCceEEEEE
Confidence 467889999999999987 89998875432 45664443
No 30
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=71.88 E-value=5.7 Score=36.40 Aligned_cols=40 Identities=8% Similarity=0.189 Sum_probs=32.0
Q ss_pred CeEEeeecCceEEEEeCc-cccCCCCCCCCCCceEEEEEEEeCC
Q 023414 218 DFVPIEVKAGSLVLIHGD-LIHQSFENQSSKSRHAYSLHVVETD 260 (282)
Q Consensus 218 ~~v~~~~~~Gdvvlf~~~-~~H~s~~n~s~~~R~~~~~~~~~~~ 260 (282)
-.+...+++||+++||.+ ++||.....+ +|-+...|.+-|
T Consensus 311 ~~~~~~l~pGd~vi~DN~rvLHgRtaf~g---~R~L~G~Y~d~D 351 (362)
T TIGR02410 311 NEIEFKLRPGTVLIFDNWRVLHSRTSFTG---YRRMCGCYLTRD 351 (362)
T ss_pred cEEEEEcCCccEEEEeeEEEeecCCCcCC---ceEEEEEEEccH
Confidence 367889999999999997 8999998852 345888887764
No 31
>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=71.36 E-value=6.2 Score=35.74 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=30.4
Q ss_pred eEEeeecCceEEEEeCc-cccCCCC--CCCCCCceEEEEEEEeC
Q 023414 219 FVPIEVKAGSLVLIHGD-LIHQSFE--NQSSKSRHAYSLHVVET 259 (282)
Q Consensus 219 ~v~~~~~~Gdvvlf~~~-~~H~s~~--n~s~~~R~~~~~~~~~~ 259 (282)
...+-+++||||+||.. ++||-.. +.++..|+ +...|.+-
T Consensus 347 ~~~fk~~~gdvv~FnN~RlLHgr~gy~~~~en~R~-L~GaY~Dw 389 (407)
T KOG3888|consen 347 QFRFKTPPGDVVTFNNLRLLHGRTGYEDTPENQRH-LVGAYFDW 389 (407)
T ss_pred ceEEECCCCCEEEEcceeeeccccccccCccccce-eeeeEeeh
Confidence 37889999999999876 9999643 44556776 77777664
No 32
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=71.35 E-value=4.8 Score=34.29 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=25.0
Q ss_pred CCeEEeeecCceEEEEeCc-cccCCCCC-CCCCCceEEE
Q 023414 217 NDFVPIEVKAGSLVLIHGD-LIHQSFEN-QSSKSRHAYS 253 (282)
Q Consensus 217 ~~~v~~~~~~Gdvvlf~~~-~~H~s~~n-~s~~~R~~~~ 253 (282)
.......+++||++|+|.+ ++||..+- .....|.++-
T Consensus 218 ~~~~~~~~~~GDlli~dN~~~lHgR~~~~~~~~~R~L~R 256 (258)
T PF02668_consen 218 EYTYRHRWQPGDLLIWDNHRVLHGRTAFDDPDGDRHLLR 256 (258)
T ss_dssp GGEEEEE--TTEEEEEETTTEEEEE--E-STTSSEEEEE
T ss_pred hhcccccCCCceEEEEcCCeeEecCCCCCCCCCCEEEEE
Confidence 4467889999999999987 79998876 3456676543
No 33
>PF08856 DUF1826: Protein of unknown function (DUF1826); InterPro: IPR014955 These proteins are functionally uncharacterised.
Probab=70.49 E-value=5.9 Score=33.00 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=28.2
Q ss_pred EEeeecCceEEEEeCc---------cccCCCCCC-CCCCceEEEE
Q 023414 220 VPIEVKAGSLVLIHGD---------LIHQSFENQ-SSKSRHAYSL 254 (282)
Q Consensus 220 v~~~~~~Gdvvlf~~~---------~~H~s~~n~-s~~~R~~~~~ 254 (282)
....+++|||.|+.+. ++|+|-+.. ++.+|..+++
T Consensus 151 ~i~~~~~G~vallKG~~w~g~~~~glvHRSP~~~~~~~~RLlLtl 195 (196)
T PF08856_consen 151 RIQQLPTGDVALLKGERWPGNEGAGLVHRSPPISGSGERRLLLTL 195 (196)
T ss_pred cceecCCCCEEEEccCCCCCCCCCceeeCCCCCCCCCCceEEEEe
Confidence 4458999999999876 789988887 6788877764
No 34
>COG2175 TauD Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.48 E-value=7.5 Score=34.39 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=31.1
Q ss_pred CeEEeeecCceEEEEeCc-cccCCCCCCCCCCceEEEEEEEeC
Q 023414 218 DFVPIEVKAGSLVLIHGD-LIHQSFENQSSKSRHAYSLHVVET 259 (282)
Q Consensus 218 ~~v~~~~~~Gdvvlf~~~-~~H~s~~n~s~~~R~~~~~~~~~~ 259 (282)
-.+..-.++||++|||.+ ++|++..--.+..|+ +.-.+..+
T Consensus 237 ~~~r~~wq~gDivIwDNr~~lH~a~~~~~~~~R~-l~R~t~~~ 278 (286)
T COG2175 237 NQYRHRWQPGDIVIWDNRATLHAATAFYADQRRI-LHRCTILG 278 (286)
T ss_pred hEEEEecCCCCEEEEeCcceeeccccCCccceEE-EEEeeecC
Confidence 467889999999999999 799998876665555 44444444
No 35
>PRK02963 carbon starvation induced protein; Validated
Probab=63.74 E-value=11 Score=33.77 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=29.7
Q ss_pred CeEEeeecCceEEEEeCc-cccCCCCCC--CCCCceEE--EEEEEe
Q 023414 218 DFVPIEVKAGSLVLIHGD-LIHQSFENQ--SSKSRHAY--SLHVVE 258 (282)
Q Consensus 218 ~~v~~~~~~Gdvvlf~~~-~~H~s~~n~--s~~~R~~~--~~~~~~ 258 (282)
..+.+.+++||+|+||.+ ++||-..-. +...|+.+ ...|..
T Consensus 265 ~~~~fkL~pGd~vvfDN~RVLHGR~aF~~~~g~~R~L~r~rG~y~d 310 (316)
T PRK02963 265 GILSVPVPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYFAY 310 (316)
T ss_pred hEEEEecCCceEEEEeCeEEeeCCCCcCCCCCCceEEEecceEEec
Confidence 457889999999999887 899988765 34556542 455544
No 36
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=54.97 E-value=76 Score=27.63 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=26.0
Q ss_pred EeeecCceEEE--EeCc---cccCCCCCCCCCCceEEEEEEEeCCC
Q 023414 221 PIEVKAGSLVL--IHGD---LIHQSFENQSSKSRHAYSLHVVETDG 261 (282)
Q Consensus 221 ~~~~~~Gdvvl--f~~~---~~H~s~~n~s~~~R~~~~~~~~~~~~ 261 (282)
.+.+..||++= -|.+ ++||+-.+ +...|+++.+-+.+..+
T Consensus 172 a~vVNiGD~l~~~tng~~~S~~HRVv~~-~~~~R~Sia~F~~p~~d 216 (262)
T PLN03001 172 AILIIIADQTEIITNGNYKSAQHRAIAN-ANKARLSVATFHDPAKT 216 (262)
T ss_pred cEEEEccHHHHHHhCCccccccceEEcC-CCCCEEEEEEEEcCCCC
Confidence 35667777762 2222 67998754 45679999888877643
No 37
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=54.45 E-value=74 Score=28.65 Aligned_cols=36 Identities=8% Similarity=0.067 Sum_probs=30.4
Q ss_pred HHHHHhhhCcEEEEcC-CCCHHHHHHHHHHHHHHHcc
Q 023414 10 DNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (282)
Q Consensus 10 ~~~~~f~~~Gyvvi~~-~~~~~~v~~l~~~~~~~~~~ 45 (282)
+.+++-++-||.-+-| =++.+.++++.....+.++-
T Consensus 39 ~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~l 75 (322)
T KOG0143|consen 39 KLREACEEWGFFQVINHGISLELLDKVKEASKEFFEL 75 (322)
T ss_pred HHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcC
Confidence 5667888999986555 89999999999999998875
No 38
>PLN02276 gibberellin 20-oxidase
Probab=53.98 E-value=90 Score=28.57 Aligned_cols=96 Identities=19% Similarity=0.255 Sum_probs=0.0
Q ss_pred CCCCCCCcccCCCCCCcCCCCcceEEeeeeeecCCcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeEEee
Q 023414 144 PGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIE 223 (282)
Q Consensus 144 p~~~~~~~wH~D~~~~~~~p~~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 223 (282)
|...-....|.|... +-|-++| +-|+|+|... .+|+.++
T Consensus 219 ~~~~~g~~~HTD~g~----------lTlL~Qd---~v~GLQV~~~----------------------------g~Wi~V~ 257 (361)
T PLN02276 219 PELTLGTGPHCDPTS----------LTILHQD---QVGGLQVFVD----------------------------NKWRSVR 257 (361)
T ss_pred cccccCCccccCCce----------eEEEEec---CCCceEEEEC----------------------------CEEEEcC
Q ss_pred ecCceEEEEe------------CccccCCCCCCCCCCceEEEEEEEeCCCcccCCCCccccCCCCCCCCCC
Q 023414 224 VKAGSLVLIH------------GDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQENWIRRKVEPEPLYAS 282 (282)
Q Consensus 224 ~~~Gdvvlf~------------~~~~H~s~~n~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (282)
..+|.+|+.- ..++||...+ +...|+++.+-+.+..+..-.+-.-+..+ +-+..|..
T Consensus 258 p~pgalVVNiGD~L~~~TNG~~kSt~HRVv~~-~~~~R~Sia~F~~P~~d~~i~pl~~~v~~-~~p~~y~~ 326 (361)
T PLN02276 258 PRPGALVVNIGDTFMALSNGRYKSCLHRAVVN-SERERRSLAFFLCPKEDKVVRPPQELVDR-EGPRKYPD 326 (361)
T ss_pred CCCCeEEEEcHHHHHHHhCCccccccceeecC-CCCCEEEEEEEecCCCCCEEeCChHhcCC-CCCCcCCC
No 39
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=53.94 E-value=35 Score=25.09 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=32.4
Q ss_pred CHHHHHHhhhCcEEEEcC-CCCHHHHHHHHHHHHHHHcc
Q 023414 8 NSDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (282)
Q Consensus 8 t~~~~~~f~~~Gyvvi~~-~~~~~~v~~l~~~~~~~~~~ 45 (282)
.++..+.+++.||+.|.| =++.+.++++.+...+.++-
T Consensus 17 ~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~l 55 (116)
T PF14226_consen 17 AEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFAL 55 (116)
T ss_dssp HHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHh
Confidence 356778899999999887 68999999999999988854
No 40
>PLN02216 protein SRG1
Probab=53.33 E-value=81 Score=28.82 Aligned_cols=97 Identities=21% Similarity=0.230 Sum_probs=0.0
Q ss_pred CCCCCCCcccCCCCCCcCCCCcceEEeeeeeecCCcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeEEee
Q 023414 144 PGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIE 223 (282)
Q Consensus 144 p~~~~~~~wH~D~~~~~~~p~~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 223 (282)
|...-.++.|.|... +-|-++|.. -|||+|... .+|+.++
T Consensus 223 ~~~~~G~~~HtD~g~----------lTlL~q~~~--v~GLQV~~~----------------------------g~Wi~V~ 262 (357)
T PLN02216 223 PDQVIGLTPHSDAVG----------LTILLQVNE--VEGLQIKKD----------------------------GKWVSVK 262 (357)
T ss_pred cccccCccCcccCce----------EEEEEecCC--CCceeEEEC----------------------------CEEEECC
Q ss_pred ecCceEEEEeCccc------------cCCCCCCCCCCceEEEEEEEeCCCcccCCCCccccCCCCCCCCCC
Q 023414 224 VKAGSLVLIHGDLI------------HQSFENQSSKSRHAYSLHVVETDGCRWSQENWIRRKVEPEPLYAS 282 (282)
Q Consensus 224 ~~~Gdvvlf~~~~~------------H~s~~n~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (282)
..+|.+|+--+.++ ||+-.| +...|+++.+-+.+..+....+-.-+..+ +-+++|..
T Consensus 263 p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~-~~~~R~Si~~F~~P~~d~~i~p~~~lv~~-~~p~~Y~~ 331 (357)
T PLN02216 263 PLPNALVVNVGDILEIITNGTYRSIEHRGVVN-SEKERLSVATFHNTGMGKEIGPAKSLVER-QKAALFKS 331 (357)
T ss_pred CCCCeEEEEcchhhHhhcCCeeeccCceeecC-CCCCEEEEEEEecCCCCCeEeCcHHHcCC-CCCCCCCC
No 41
>PLN02947 oxidoreductase
Probab=51.59 E-value=1.1e+02 Score=28.31 Aligned_cols=37 Identities=11% Similarity=0.069 Sum_probs=30.5
Q ss_pred HHHHHHhhhCcEEEEcC-CCCHHHHHHHHHHHHHHHcc
Q 023414 9 SDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (282)
Q Consensus 9 ~~~~~~f~~~Gyvvi~~-~~~~~~v~~l~~~~~~~~~~ 45 (282)
++..++.++-||+.|.| -++.+.++++.+...+.++-
T Consensus 85 ~~l~~Ac~~~GFF~v~nHGIp~~li~~~~~~~~~FF~L 122 (374)
T PLN02947 85 ATLAAACREYGFFQVVNHGVPSEVIGGMIDVARRFFEL 122 (374)
T ss_pred HHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcC
Confidence 35567788999988776 78999999999998887764
No 42
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=50.51 E-value=10 Score=25.04 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.3
Q ss_pred EeeecCceEEEEeCccccCCCCC
Q 023414 221 PIEVKAGSLVLIHGDLIHQSFEN 243 (282)
Q Consensus 221 ~~~~~~Gdvvlf~~~~~H~s~~n 243 (282)
...+++||+++......|+....
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~ 60 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNP 60 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEE
T ss_pred EeEccCCEEEEECCCCeEEEEEC
Confidence 67999999999999999998443
No 43
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=49.10 E-value=46 Score=25.24 Aligned_cols=37 Identities=5% Similarity=0.012 Sum_probs=31.2
Q ss_pred HHHHHHhhhCcEEEEcC-CCCHHHHHHHHHHHHHHHcc
Q 023414 9 SDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (282)
Q Consensus 9 ~~~~~~f~~~Gyvvi~~-~~~~~~v~~l~~~~~~~~~~ 45 (282)
++.++.+++.||+.|.| -++.++++++.+...+.++.
T Consensus 58 ~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~~FF~L 95 (120)
T PLN03176 58 NKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKEFFAL 95 (120)
T ss_pred HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCC
Confidence 34556788899999887 79999999999999998874
No 44
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=47.98 E-value=46 Score=24.44 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.9
Q ss_pred CCCCCCCHHHHHHhhhCcEEEEcCCC
Q 023414 2 GLAGNLNSDNLNFFNSQGYVVLESFA 27 (282)
Q Consensus 2 ~~~~~lt~~~~~~f~~~Gyvvi~~~~ 27 (282)
++.+.+|++....+++.|.+++|+++
T Consensus 31 gAN~~~t~~a~~~L~~rGi~~~PD~~ 56 (102)
T smart00839 31 GANMPLTDEADDILEDRGVLYAPDFA 56 (102)
T ss_pred cCCCCCCHHHHHHHHHCCCEEcCcce
Confidence 46788999999999999999999765
No 45
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=47.74 E-value=24 Score=28.33 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=26.1
Q ss_pred EeeecCceEEEEeCccccCCCCCCCCCCceEEEEEEEe
Q 023414 221 PIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVE 258 (282)
Q Consensus 221 ~~~~~~Gdvvlf~~~~~H~s~~n~s~~~R~~~~~~~~~ 258 (282)
...++.|.+++||....|.+-. .++.+|..+++-|..
T Consensus 125 ~~~w~~G~~~~fD~s~~H~~~N-~~~~~Rv~L~vD~~h 161 (163)
T PF05118_consen 125 TRHWREGECWVFDDSFEHEVWN-NGDEDRVVLIVDFWH 161 (163)
T ss_dssp EEB--CTEEEEE-TTS-EEEEE-SSSS-EEEEEEEEE-
T ss_pred EEEeccCcEEEEeCCEEEEEEe-CCCCCEEEEEEEeec
Confidence 4577899999999999998876 478899999988754
No 46
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=47.68 E-value=27 Score=28.44 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=21.2
Q ss_pred EEeeecCceEEEEeCccccCCCCCCCC
Q 023414 220 VPIEVKAGSLVLIHGDLIHQSFENQSS 246 (282)
Q Consensus 220 v~~~~~~Gdvvlf~~~~~H~s~~n~s~ 246 (282)
....+++||.+.|++.+.|+-.. .++
T Consensus 146 ~~~~l~~Gd~~~~~~~~~H~~~n-~~~ 171 (185)
T PRK09943 146 QDYHLVAGQSYAINTGIPHSFSN-TSA 171 (185)
T ss_pred EEEEecCCCEEEEcCCCCeeeeC-CCC
Confidence 45789999999999999998554 444
No 47
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=47.59 E-value=20 Score=26.58 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=21.7
Q ss_pred EEeeecCceEEEEeCccccCCCCCCCCCCceEEEEEEEeC
Q 023414 220 VPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVET 259 (282)
Q Consensus 220 v~~~~~~Gdvvlf~~~~~H~s~~n~s~~~R~~~~~~~~~~ 259 (282)
....+++||++++++..+|+....... .-..+.+.|.+.
T Consensus 41 ~~~~l~~g~~~li~p~~~H~~~~~~~~-~~~~~~i~~~~~ 79 (136)
T PF02311_consen 41 QEYPLKPGDLFLIPPGQPHSYYPDSNE-PWEYYWIYFSPD 79 (136)
T ss_dssp EEEEE-TT-EEEE-TTS-EEEEE-TTS-EEEEEEEEE---
T ss_pred EEEEEECCEEEEecCCccEEEecCCCC-CEEEEEEEECHH
Confidence 357899999999999999997775433 333345555443
No 48
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=44.91 E-value=1e+02 Score=28.13 Aligned_cols=96 Identities=23% Similarity=0.323 Sum_probs=0.0
Q ss_pred CCCCCCCcccCCCCCCcCCCCcceEEeeeeeecCCcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCC-CeEEe
Q 023414 144 PGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQN-DFVPI 222 (282)
Q Consensus 144 p~~~~~~~wH~D~~~~~~~p~~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 222 (282)
|...-..+.|.|... +-|-++| +-|||+|... . +|+.+
T Consensus 223 ~~~~~G~~~HtD~g~----------lTiL~Qd---~v~GLQV~~~----------------------------~~~Wi~V 261 (358)
T PLN02254 223 PDRAMGLAPHTDSSL----------LTILYQS---NTSGLQVFRE----------------------------GVGWVTV 261 (358)
T ss_pred cccccCcCCccCCCc----------EEEEecC---CCCCceEECC----------------------------CCEEEEc
Q ss_pred eecCceEEEEeCc------------cccCCCCCCCCCCceEEEEEEEeCCCcccCCCCccccCCCCCCCCCC
Q 023414 223 EVKAGSLVLIHGD------------LIHQSFENQSSKSRHAYSLHVVETDGCRWSQENWIRRKVEPEPLYAS 282 (282)
Q Consensus 223 ~~~~Gdvvlf~~~------------~~H~s~~n~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (282)
...+|.+|+.-+. ++||+-.| +...|+++.+-+.+..+....+-.-+..+ +-+++|..
T Consensus 262 ~p~pgalVVNiGD~lq~~SNg~~kS~~HRVv~~-~~~~R~Sia~F~~P~~d~~i~pl~~lv~~-~~p~~Y~~ 331 (358)
T PLN02254 262 PPVPGSLVVNVGDLLHILSNGRFPSVLHRAVVN-KTRHRISVAYFYGPPSDVQISPLPKLVDP-NHPPLYRS 331 (358)
T ss_pred ccCCCCEEEEhHHHHHHHhCCeeccccceeecC-CCCCEEEEEEEecCCCCcEEeCcHHhcCC-CCCcccCC
No 49
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=44.39 E-value=15 Score=30.48 Aligned_cols=12 Identities=33% Similarity=0.684 Sum_probs=10.1
Q ss_pred eeecCceEEEEe
Q 023414 222 IEVKAGSLVLIH 233 (282)
Q Consensus 222 ~~~~~Gdvvlf~ 233 (282)
-.+++||+|||.
T Consensus 127 ~~lqpGDLVfF~ 138 (190)
T PRK10838 127 SKLRTGDLVLFR 138 (190)
T ss_pred CCCCCCcEEEEC
Confidence 468999999995
No 50
>PRK11354 kil FtsZ inhibitor protein; Reviewed
Probab=43.38 E-value=29 Score=23.64 Aligned_cols=26 Identities=27% Similarity=0.188 Sum_probs=21.7
Q ss_pred eEEeeecCceEEEEeCccccCCCCCC
Q 023414 219 FVPIEVKAGSLVLIHGDLIHQSFENQ 244 (282)
Q Consensus 219 ~v~~~~~~Gdvvlf~~~~~H~s~~n~ 244 (282)
...-.+.||++|+++.+++=+|..|.
T Consensus 11 v~Rq~V~PG~~v~~~grty~ASAN~~ 36 (73)
T PRK11354 11 IPRQCVTPGDYVLHEGRTYIASANNI 36 (73)
T ss_pred ecccccCCceEEEEcCcEEEEEechh
Confidence 44557789999999999999988864
No 51
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=41.57 E-value=1.9e+02 Score=26.28 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=31.7
Q ss_pred HHHHHHhhhCcEEEEcC-CCCHHHHHHHHHHHHHHHcc
Q 023414 9 SDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (282)
Q Consensus 9 ~~~~~~f~~~Gyvvi~~-~~~~~~v~~l~~~~~~~~~~ 45 (282)
++..+.+++.||+.|.| -++.++++++.+...+.++-
T Consensus 60 ~~l~~A~~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~L 97 (348)
T PLN02912 60 NQFAHACSSYGFFQIKNHGVPEETIKKMMNVAREFFHQ 97 (348)
T ss_pred HHHHHHHHHCCEEEEEeCCCCHHHHHHHHHHHHHHhcC
Confidence 45678899999998886 78999999999999988763
No 52
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=41.46 E-value=1.5e+02 Score=24.65 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=21.1
Q ss_pred CeEEeeecCceEEEEeCc---cccCCCCCCC
Q 023414 218 DFVPIEVKAGSLVLIHGD---LIHQSFENQS 245 (282)
Q Consensus 218 ~~v~~~~~~Gdvvlf~~~---~~H~s~~n~s 245 (282)
....+.++.||+|++-+. .||..-++++
T Consensus 155 ~~~~~~L~~Gdvvvm~G~~r~~~~h~~p~~~ 185 (194)
T COG3145 155 PGLRLRLEHGDVVVMGGPSRLAWHHIIPKTS 185 (194)
T ss_pred CceeEEecCCCEEEecCCccccccccccccc
Confidence 356789999999999876 5775555543
No 53
>PF06047 SynMuv_product: Ras-induced vulval development antagonist; InterPro: IPR009269 This is a family of eukaryotic proteins with undetermined function.
Probab=41.10 E-value=21 Score=26.20 Aligned_cols=20 Identities=35% Similarity=0.601 Sum_probs=17.2
Q ss_pred CCCHHHHHHhhhCcEEEEcC
Q 023414 6 NLNSDNLNFFNSQGYVVLES 25 (282)
Q Consensus 6 ~lt~~~~~~f~~~Gyvvi~~ 25 (282)
.||.++++.|+.-|||-=-+
T Consensus 34 GltseeI~~~E~~GYVMSGS 53 (104)
T PF06047_consen 34 GLTSEEIASFEDVGYVMSGS 53 (104)
T ss_pred CCCHHHHHHHHhcCeeeecc
Confidence 59999999999999986543
No 54
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=39.92 E-value=1.8e+02 Score=24.42 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=37.4
Q ss_pred CCeEEeeecCceEEEEeCccccCCCCCCCCCCceEEEEEEEeCCCcccCCCCccc
Q 023414 217 NDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQENWIR 271 (282)
Q Consensus 217 ~~~v~~~~~~Gdvvlf~~~~~H~s~~n~s~~~R~~~~~~~~~~~~~~~~~~~~~~ 271 (282)
.+.+.+.+++||+++--....|.+- |.++.+=. +...|.+..+..|+.-.|+-
T Consensus 123 G~~~v~~~~~Gd~iyVPp~~gH~t~-N~Gd~pLv-f~~v~~~~~~~~y~~~~~~~ 175 (209)
T COG2140 123 GEARVIAVRAGDVIYVPPGYGHYTI-NTGDEPLV-FLNVYPADAGQDYDLIAWLG 175 (209)
T ss_pred CcEEEEEecCCcEEEeCCCcceEee-cCCCCCEE-EEEEEeCCCCceeeeeehhc
Confidence 4588999999999999999999875 45555544 55556555455666554543
No 55
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=39.81 E-value=69 Score=24.48 Aligned_cols=36 Identities=6% Similarity=-0.046 Sum_probs=26.5
Q ss_pred EEeeecCceEEEEeCccccCCCCCCCCCCceEEEEEEEeC
Q 023414 220 VPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVET 259 (282)
Q Consensus 220 v~~~~~~Gdvvlf~~~~~H~s~~n~s~~~R~~~~~~~~~~ 259 (282)
....+++||++++.+...|+-... ....+...+.+.
T Consensus 75 ~~~~L~aGD~i~~~~~~~H~~~N~----e~~~~l~v~tP~ 110 (125)
T PRK13290 75 EVHPIRPGTMYALDKHDRHYLRAG----EDMRLVCVFNPP 110 (125)
T ss_pred EEEEeCCCeEEEECCCCcEEEEcC----CCEEEEEEECCC
Confidence 357899999999999999998774 234445555544
No 56
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=39.16 E-value=40 Score=27.96 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=23.0
Q ss_pred EEeeecCceEEEEe-CccccCCCCCCC-----CCCceEEEEEE
Q 023414 220 VPIEVKAGSLVLIH-GDLIHQSFENQS-----SKSRHAYSLHV 256 (282)
Q Consensus 220 v~~~~~~Gdvvlf~-~~~~H~s~~n~s-----~~~R~~~~~~~ 256 (282)
.....++||.++++ ..++|++++... +..|=++.+.|
T Consensus 153 ~~~l~~p~d~l~~~D~~~~H~vtpI~~~~~~~~g~RDvlvitf 195 (195)
T PF10014_consen 153 FFTLLEPGDTLLVDDRRVWHYVTPIRPVDPSRPGYRDVLVITF 195 (195)
T ss_dssp EE---STTEEEEEETTTEEEEE--EEES-TT---EEEEEEEEE
T ss_pred EEEecCCCCEEEEeCCcceECCCceecCCCCCcEEEEEEEEeC
Confidence 45678999999999 889999998642 24666666654
No 57
>PRK10204 hypothetical protein; Provisional
Probab=38.32 E-value=82 Score=19.99 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHhhh-------------CcEEEEcCCCCHHHHHHHHHHHHHH
Q 023414 4 AGNLNSDNLNFFNS-------------QGYVVLESFASDEEIEAMRKQMDHL 42 (282)
Q Consensus 4 ~~~lt~~~~~~f~~-------------~Gyvvi~~~~~~~~v~~l~~~~~~~ 42 (282)
|..||+.|...+.+ .||-+-.-.++.++..+-.+++.+.
T Consensus 1 ~~kLTDkQKsrlWeqrrn~nfqaS~RLeG~~~p~vtlt~eeA~aRl~~LRr~ 52 (55)
T PRK10204 1 MKKLTDKQKSRLWEQQRNRNFQASRRLEGVEMPLVTLTAEEALARLEELRRH 52 (55)
T ss_pred CccchHHHHHHHHHHHHhhhHHHHhhhcCcccccccccHHHHHHHHHHHHHH
Confidence 46788888877654 7888888888888887776666554
No 58
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=37.03 E-value=30 Score=27.84 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=26.3
Q ss_pred CCeEEeeecCceEEEEeCccccCCCCCCCC
Q 023414 217 NDFVPIEVKAGSLVLIHGDLIHQSFENQSS 246 (282)
Q Consensus 217 ~~~v~~~~~~Gdvvlf~~~~~H~s~~n~s~ 246 (282)
..|+.+.+++||+|+.-..+-|+-+...++
T Consensus 113 d~WIRi~vekGDlivlPaGiyHRFTtt~~n 142 (179)
T KOG2107|consen 113 DQWIRIFVEKGDLIVLPAGIYHRFTTTPSN 142 (179)
T ss_pred CCEEEEEEecCCEEEecCcceeeeecCchH
Confidence 569999999999999999999998775554
No 59
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=32.03 E-value=2.9e+02 Score=25.29 Aligned_cols=98 Identities=20% Similarity=0.157 Sum_probs=0.0
Q ss_pred CCCCCCCcccCCCCCCcCCCCcceEEeeeeeecCCcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeEEee
Q 023414 144 PGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIE 223 (282)
Q Consensus 144 p~~~~~~~wH~D~~~~~~~p~~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 223 (282)
|.......-|.|... +-|-++| +.|||+|... ...+|+.++
T Consensus 208 ~~~~~G~~~HTD~g~----------lTlL~Qd---~v~GLQV~~~--------------------------~~~~Wi~Vp 248 (358)
T PLN02515 208 PDLTLGLKRHTDPGT----------ITLLLQD---QVGGLQATRD--------------------------GGKTWITVQ 248 (358)
T ss_pred hhhccCCCCCCCCCe----------EEEEecC---CCCceEEEEC--------------------------CCCeEEECC
Q ss_pred ecCceEEEEeCccccCCCC-----------CCCCCCceEEEEEEEeCCCcccCCCCccccCCCCCCCCCC
Q 023414 224 VKAGSLVLIHGDLIHQSFE-----------NQSSKSRHAYSLHVVETDGCRWSQENWIRRKVEPEPLYAS 282 (282)
Q Consensus 224 ~~~Gdvvlf~~~~~H~s~~-----------n~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (282)
..+|.+|+--+.++..-+. +.+...|+++.+-+.+..+..-.+-. ..+.+-+++|..
T Consensus 249 p~pgalVVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Si~~F~~P~~d~~i~Pl~--~~~~~~p~~y~~ 316 (358)
T PLN02515 249 PVEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSNCSRLSIATFQNPAPDATVYPLK--VREGEKPILEEP 316 (358)
T ss_pred CCCCeEEEEccHHHHHHhCCeeeeecceEECCCCCCEEEEEEEecCCCCCEEECCC--cCCCCCCCcCCC
No 60
>KOG2371 consensus Molybdopterin biosynthesis protein [Coenzyme transport and metabolism]
Probab=31.45 E-value=36 Score=31.09 Aligned_cols=39 Identities=10% Similarity=0.312 Sum_probs=34.7
Q ss_pred CHHHHHHhhhCcEEEEcCCCCHHHHHHHHHHHHHHHccc
Q 023414 8 NSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGF 46 (282)
Q Consensus 8 t~~~~~~f~~~Gyvvi~~~~~~~~v~~l~~~~~~~~~~~ 46 (282)
+...++.|+++||-.|...+.+|.++++.+.+.++.+..
T Consensus 217 ~s~l~~l~~~~Gf~~i~~gvv~D~~~~i~e~L~e~~~~a 255 (411)
T KOG2371|consen 217 RSQLLELFQEHGFTAIDAGVVPDDVTRIKEKLREASSFA 255 (411)
T ss_pred hHHHHHHHHHhCccccccccccCcHHHHHHHHHHhhhhc
Confidence 456889999999999999999999999999999887553
No 61
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=31.38 E-value=1.1e+02 Score=23.08 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.0
Q ss_pred EeeecCceEEEEeCccccCCCCCCCCC
Q 023414 221 PIEVKAGSLVLIHGDLIHQSFENQSSK 247 (282)
Q Consensus 221 ~~~~~~Gdvvlf~~~~~H~s~~n~s~~ 247 (282)
...+++||+++.-....|+-..+.+..
T Consensus 83 ~~~l~~Gd~i~ip~g~~H~~~a~~~~~ 109 (131)
T COG1917 83 KKELKAGDVIIIPPGVVHGLKAVEDEP 109 (131)
T ss_pred ceEecCCCEEEECCCCeeeeccCCCCc
Confidence 458999999999999999998875444
No 62
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=30.23 E-value=66 Score=26.98 Aligned_cols=43 Identities=9% Similarity=0.055 Sum_probs=27.1
Q ss_pred CCeEEeeecCceEEEEeCccccCCCCCCCCCCceEEEEEEEeC
Q 023414 217 NDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVET 259 (282)
Q Consensus 217 ~~~v~~~~~~Gdvvlf~~~~~H~s~~n~s~~~R~~~~~~~~~~ 259 (282)
.....++++|||+|+.=..-||.......+..=.++.+.|...
T Consensus 206 ~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 206 APPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp --EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred CceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 3678999999999999999999987652122244555555543
No 63
>PF10637 Ofd1_CTDD: Oxoglutarate and iron-dependent oxygenase degradation C-term; InterPro: IPR019601 This entry represents the C-terminal degradation domain of oxoglutarate and iron-dependent oxygenase (Ofd1), the domain being conserved from yeasts to humans. Ofd1 is a prolyl 4-hydroxylase-like 2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation of Sre1N (the N-terminal transcription factor domain of Sre1) in the presence of oxygen []. Yeast Sre1 is the orthologue of mammalian sterol regulatory element binding protein (SREBP), and it responds to changes in oxygen-dependent sterol synthesis as an indirect measure of oxygen availability. However, unlike the prolyl 4-hydroxylases that regulate mammalian hypoxia-inducible factor, Ofd1 uses multiple domains to regulate Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase domain is required for oxygen sensing and this Ofd1 C-terminal domain accelerates Sre1N degradation in yeasts []. ; GO: 0005506 iron ion binding, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0031418 L-ascorbic acid binding, 0055114 oxidation-reduction process; PDB: 3KT4_A 3KT1_A 3KT7_A 3MGU_A.
Probab=30.19 E-value=80 Score=27.67 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=26.7
Q ss_pred HHHHhhhCcEEEEcCCCCHHHHHHHHHHHHHH
Q 023414 11 NLNFFNSQGYVVLESFASDEEIEAMRKQMDHL 42 (282)
Q Consensus 11 ~~~~f~~~Gyvvi~~~~~~~~v~~l~~~~~~~ 42 (282)
..++|.++..+-|.+||.++..++|++.+...
T Consensus 23 i~~~F~e~S~i~L~~FL~~~~~~~L~~~l~~~ 54 (266)
T PF10637_consen 23 IQEQFEEESEIQLENFLKPEKAEQLKEALESQ 54 (266)
T ss_dssp HHHHHHHHSEEEESS-B-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcceEeHHHhcCHHHHHHHHHHHHhh
Confidence 45788999999999999999999999999753
No 64
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=29.64 E-value=65 Score=25.79 Aligned_cols=40 Identities=13% Similarity=0.242 Sum_probs=28.3
Q ss_pred CCeEEeeecCceEEEEeCccccCCCCCCCCCCceEEEEEEEeC
Q 023414 217 NDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVET 259 (282)
Q Consensus 217 ~~~v~~~~~~Gdvvlf~~~~~H~s~~n~s~~~R~~~~~~~~~~ 259 (282)
..++.+.+++||+|+--..+-|+-... ...+...+||...
T Consensus 112 ~~wiri~~e~GDli~vP~g~~HrF~~~---~~~~i~aiRlF~~ 151 (157)
T PF03079_consen 112 DVWIRILCEKGDLIVVPAGTYHRFTLG---ESPYIKAIRLFKD 151 (157)
T ss_dssp CEEEEEEEETTCEEEE-TT--EEEEES---TTSSEEEEEEESS
T ss_pred CEEEEEEEcCCCEEecCCCCceeEEcC---CCCcEEEEEeecC
Confidence 457889999999999999999997653 2344567777765
No 65
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=28.56 E-value=33 Score=26.52 Aligned_cols=11 Identities=9% Similarity=0.486 Sum_probs=10.0
Q ss_pred eecCceEEEEe
Q 023414 223 EVKAGSLVLIH 233 (282)
Q Consensus 223 ~~~~Gdvvlf~ 233 (282)
.+++||+|||.
T Consensus 76 ~~qpGDlvff~ 86 (134)
T TIGR02219 76 AAQPGDVLVFR 86 (134)
T ss_pred cCCCCCEEEEe
Confidence 58999999996
No 66
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=28.42 E-value=93 Score=26.61 Aligned_cols=34 Identities=15% Similarity=0.057 Sum_probs=24.2
Q ss_pred eEEeeecCceEEEEeCccc-cCCCCCCCCCCceEEEEEE
Q 023414 219 FVPIEVKAGSLVLIHGDLI-HQSFENQSSKSRHAYSLHV 256 (282)
Q Consensus 219 ~v~~~~~~Gdvvlf~~~~~-H~s~~n~s~~~R~~~~~~~ 256 (282)
.....+++||++++..... |.+.+. ..|+ +++.|
T Consensus 192 G~t~~l~pGDvlfIPkGs~~hf~tp~---~aRf-lyV~~ 226 (233)
T PRK15457 192 GETMIAKAGDVMFIPKGSSIEFGTPS---SVRF-LYVAW 226 (233)
T ss_pred CEEEEeCCCcEEEECCCCeEEecCCC---CeeE-EEEEe
Confidence 4567999999999999998 664442 4455 44444
No 67
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=27.46 E-value=92 Score=26.25 Aligned_cols=43 Identities=19% Similarity=0.040 Sum_probs=26.4
Q ss_pred CCCcccCCCCCCcCCCCcceEEeeeeeecCCcCceEEEEcCCCCCC
Q 023414 148 GEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNG 193 (282)
Q Consensus 148 ~~~~wH~D~~~~~~~p~~~v~~~i~L~d~~~~~G~l~~ipGSH~~~ 193 (282)
...+||.|..|+...| .+.++..+ .....+|.+.|+.+.....
T Consensus 95 ~~l~~HtD~~~~~~~p--~~~~L~c~-~~~~~GG~T~~~d~~~~~~ 137 (258)
T PF02668_consen 95 GELPWHTDGSYWPYPP--DYLALYCL-RPAEEGGETTFADARAVYE 137 (258)
T ss_dssp SGEEEE-TTTTSTTEE--SEEEEEEE-EEESSSSEEEEEEHHHHHH
T ss_pred cccccccccCcccCCc--ceeEEEee-ccCCCCCccccccHHHHHh
Confidence 4478999999865322 33334444 3344678899988766554
No 68
>PLN02704 flavonol synthase
Probab=26.92 E-value=2.9e+02 Score=24.87 Aligned_cols=37 Identities=11% Similarity=-0.008 Sum_probs=31.0
Q ss_pred HHHHHHhhhCcEEEEcC-CCCHHHHHHHHHHHHHHHcc
Q 023414 9 SDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (282)
Q Consensus 9 ~~~~~~f~~~Gyvvi~~-~~~~~~v~~l~~~~~~~~~~ 45 (282)
++..+++++.||+.|.| -++.++++++.+...+.++-
T Consensus 58 ~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~L 95 (335)
T PLN02704 58 RLIAEASKEWGMFQIVNHGIPSEVISKLQKVGKEFFEL 95 (335)
T ss_pred HHHHHHHHHcCEEEEEcCCCCHHHHHHHHHHHHHHHcC
Confidence 34567899999998886 78999999999999988763
No 69
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=26.80 E-value=77 Score=28.44 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=21.8
Q ss_pred eEEeeecCceEEEEeCccccCCCCC
Q 023414 219 FVPIEVKAGSLVLIHGDLIHQSFEN 243 (282)
Q Consensus 219 ~v~~~~~~Gdvvlf~~~~~H~s~~n 243 (282)
-..+.++|||+++-.+-++|+-...
T Consensus 157 Ln~v~lkpGe~~fl~Agt~HA~~~G 181 (312)
T COG1482 157 LNRVKLKPGEAFFLPAGTPHAYLKG 181 (312)
T ss_pred hcEEecCCCCEEEecCCCceeeccc
Confidence 4578999999999999999997664
No 70
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=26.72 E-value=1.3e+02 Score=24.91 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.8
Q ss_pred eEEeeecCceEEEEeCccccCCCC
Q 023414 219 FVPIEVKAGSLVLIHGDLIHQSFE 242 (282)
Q Consensus 219 ~v~~~~~~Gdvvlf~~~~~H~s~~ 242 (282)
.....+++||+++......|+...
T Consensus 119 ~~~~~v~pGd~v~IPpg~~H~~iN 142 (191)
T PRK04190 119 ARWIEMEPGTVVYVPPYWAHRSVN 142 (191)
T ss_pred EEEEEECCCCEEEECCCCcEEeEE
Confidence 556899999999999999998554
No 71
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=26.44 E-value=1e+02 Score=27.21 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=19.7
Q ss_pred EEeeecCceEEEEeCccccCCCC
Q 023414 220 VPIEVKAGSLVLIHGDLIHQSFE 242 (282)
Q Consensus 220 v~~~~~~Gdvvlf~~~~~H~s~~ 242 (282)
....+++||++|+++..+|....
T Consensus 64 ~~~~l~~Gd~ili~s~~~H~~~~ 86 (302)
T PRK10371 64 EKVQINQGHITLFWACTPHQLTD 86 (302)
T ss_pred EEEEEcCCcEEEEecCCcccccc
Confidence 35689999999999999998654
No 72
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.97 E-value=1e+02 Score=26.20 Aligned_cols=34 Identities=18% Similarity=0.024 Sum_probs=26.6
Q ss_pred CCCCHHHHHHhhhCcEEEEcCCCCHHHHHHHHHH
Q 023414 5 GNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQ 38 (282)
Q Consensus 5 ~~lt~~~~~~f~~~Gyvvi~~~~~~~~v~~l~~~ 38 (282)
+.++++.++.-++.|..++++++++.|+....+.
T Consensus 98 P~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~ 131 (222)
T PRK07114 98 PLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEEL 131 (222)
T ss_pred CCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHC
Confidence 4577778888888899999999999888766543
No 73
>PRK11171 hypothetical protein; Provisional
Probab=25.84 E-value=74 Score=27.73 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=23.4
Q ss_pred EEeeecCceEEEEeCccccCCCCCCCCCCceEE
Q 023414 220 VPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAY 252 (282)
Q Consensus 220 v~~~~~~Gdvvlf~~~~~H~s~~n~s~~~R~~~ 252 (282)
...++++||++.|.+...|.-...-+..-|+.+
T Consensus 223 ~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~ 255 (266)
T PRK11171 223 DWVEVEAGDFIWMRAYCPQACYAGGPGPFRYLL 255 (266)
T ss_pred EEEEeCCCCEEEECCCCCEEEECCCCCcEEEEE
Confidence 456899999999999999975543333445433
No 74
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=24.95 E-value=1.5e+02 Score=26.82 Aligned_cols=37 Identities=8% Similarity=0.033 Sum_probs=31.5
Q ss_pred HHHHHHhhhCcEEEEcC-CCCHHHHHHHHHHHHHHHcc
Q 023414 9 SDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (282)
Q Consensus 9 ~~~~~~f~~~Gyvvi~~-~~~~~~v~~l~~~~~~~~~~ 45 (282)
++..+++++.||+.|.| -++.++++++.+...+.++-
T Consensus 30 ~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~L 67 (332)
T PLN03002 30 ASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFAL 67 (332)
T ss_pred HHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 45668889999998887 78999999999999988864
No 75
>PLN02704 flavonol synthase
Probab=24.86 E-value=1.4e+02 Score=26.90 Aligned_cols=40 Identities=15% Similarity=0.358 Sum_probs=27.3
Q ss_pred EeeecCceEEEEeCc-----cccCCCCCCCCCCceEEEEEEEeCCC
Q 023414 221 PIEVKAGSLVLIHGD-----LIHQSFENQSSKSRHAYSLHVVETDG 261 (282)
Q Consensus 221 ~~~~~~Gdvvlf~~~-----~~H~s~~n~s~~~R~~~~~~~~~~~~ 261 (282)
.+.+..||++=.-++ ++||.-.+ ....|+++.+-+.+..+
T Consensus 255 ~lvVNvGD~L~~~TNg~~kSt~HRVv~~-~~~~R~Si~~F~~p~~d 299 (335)
T PLN02704 255 ALVIHIGDQIEILSNGKYKSVLHRTTVN-KEKTRMSWPVFLEPPSE 299 (335)
T ss_pred eEEEEechHHHHHhCCeeecccceeecC-CCCCeEEEEEEecCCCC
Confidence 356667776644333 78998654 45679999998888743
No 76
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=24.25 E-value=1.5e+02 Score=21.58 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=16.1
Q ss_pred CCeEEeeecCceEEEEeCc
Q 023414 217 NDFVPIEVKAGSLVLIHGD 235 (282)
Q Consensus 217 ~~~v~~~~~~Gdvvlf~~~ 235 (282)
...+++.++.||.|+|...
T Consensus 52 g~~~~~~VkvGD~Vlf~ky 70 (96)
T COG0234 52 GELVPLDVKVGDRVLFGKY 70 (96)
T ss_pred CCEeccccccCCEEEECcc
Confidence 4578899999999999864
No 77
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=24.14 E-value=78 Score=24.93 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=21.9
Q ss_pred CCeEEeeecCceEEEEeCccccCCC--CCCCCCCceEE
Q 023414 217 NDFVPIEVKAGSLVLIHGDLIHQSF--ENQSSKSRHAY 252 (282)
Q Consensus 217 ~~~v~~~~~~Gdvvlf~~~~~H~s~--~n~s~~~R~~~ 252 (282)
.....+.+++|+.++|-+.=+|+.+ .+.+...|.++
T Consensus 110 ~~~~~i~l~~g~f~iffP~d~H~p~~~~~~~~~v~K~V 147 (153)
T PF04074_consen 110 KNESFITLKPGDFAIFFPEDAHRPGCAVDEPEPVRKVV 147 (153)
T ss_dssp TTEEEEEE-TTEEEEE-TT--EEEEE-BTT--B-EEEE
T ss_pred CCceEEEEcCCEEEEECCCccccccccCCCCceEEEEE
Confidence 3456789999999999999999966 44445677654
No 78
>PF13101 DUF3945: Protein of unknown function (DUF3945)
Probab=23.93 E-value=52 Score=21.51 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=20.9
Q ss_pred CCCHHHHHHhhhCcEEEEcCCCCH
Q 023414 6 NLNSDNLNFFNSQGYVVLESFASD 29 (282)
Q Consensus 6 ~lt~~~~~~f~~~Gyvvi~~~~~~ 29 (282)
.||++|.+.|.+-.-|.++|+.++
T Consensus 34 ~Ls~~q~~~L~~G~~v~le~m~~k 57 (59)
T PF13101_consen 34 ELSPEQKEDLREGKPVYLEGMVDK 57 (59)
T ss_pred cCCHHHHHHHHCCCeEEEeeeEcC
Confidence 599999999999999999987664
No 79
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.84 E-value=1.2e+02 Score=25.38 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=26.0
Q ss_pred CCCCHHHHHHhhhCcEEEEcCCCCHHHHHHHHHH
Q 023414 5 GNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQ 38 (282)
Q Consensus 5 ~~lt~~~~~~f~~~Gyvvi~~~~~~~~v~~l~~~ 38 (282)
+.++++.++.-++.|..++++++++.|+....+.
T Consensus 83 P~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~~~ 116 (201)
T PRK06015 83 PGTTQELLAAANDSDVPLLPGAATPSEVMALREE 116 (201)
T ss_pred CCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHC
Confidence 4577777888888888888888888887765543
No 80
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=23.76 E-value=1.5e+02 Score=27.02 Aligned_cols=40 Identities=15% Similarity=0.310 Sum_probs=27.8
Q ss_pred EeeecCceEEEE--eCc---cccCCCCCCCCCCceEEEEEEEeCCC
Q 023414 221 PIEVKAGSLVLI--HGD---LIHQSFENQSSKSRHAYSLHVVETDG 261 (282)
Q Consensus 221 ~~~~~~Gdvvlf--~~~---~~H~s~~n~s~~~R~~~~~~~~~~~~ 261 (282)
.+.+..||++=. |.+ ++||.-.| +...|+++.+-+.+..+
T Consensus 253 alvVNiGD~L~~~TNG~~kSt~HRVv~~-~~~~R~Sia~F~~p~~d 297 (348)
T PLN02912 253 TFIVNLGDQMQVISNDKYKSVLHRAVVN-TDKERISIPTFYCPSED 297 (348)
T ss_pred eEEEEcCHHHHHHhCCEEEcccccccCC-CCCCEEEEEEEecCCCC
Confidence 367778887733 333 78998755 34679999998888643
No 81
>PRK14053 methyltransferase; Provisional
Probab=23.72 E-value=76 Score=26.07 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=32.7
Q ss_pred CCCHHHHHHhhhCcEEEEcCCCCHHHHHHHHHHHHHHHccc
Q 023414 6 NLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGF 46 (282)
Q Consensus 6 ~lt~~~~~~f~~~Gyvvi~~~~~~~~v~~l~~~~~~~~~~~ 46 (282)
.++.+.+++|+++ |-+=+++..+.++.+.+++++..++.
T Consensus 110 Ni~~~aVerFq~Q--VeiVD~Ig~eD~~~I~a~I~~~~~k~ 148 (194)
T PRK14053 110 NISREAVQRFQQQ--VELLDRIGLTDLEEIRKIVDDYKDKG 148 (194)
T ss_pred cCCHHHHHHHHhh--eEEEEeecCCCHHHHHHHHHHHHhCC
Confidence 3789999999999 77888998888999999998776553
No 82
>PF08920 SF3b1: Splicing factor 3B subunit 1; InterPro: IPR015016 This group of proteins consists of several eukaryotic splicing factor 3B subunit 1 proteins, which associate with p14 through a C terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet, which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly []. ; PDB: 2FHO_A 3LQV_P 2PEH_D 2F9J_P 2F9D_Q.
Probab=23.36 E-value=55 Score=25.84 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=12.0
Q ss_pred CCCCCCHHHHHHhh-hCcEEEEc
Q 023414 3 LAGNLNSDNLNFFN-SQGYVVLE 24 (282)
Q Consensus 3 ~~~~lt~~~~~~f~-~~Gyvvi~ 24 (282)
+...||+|+++..= .+||-||+
T Consensus 83 RNrpLTDEELD~mLPseGYkIl~ 105 (144)
T PF08920_consen 83 RNRPLTDEELDAMLPSEGYKILE 105 (144)
T ss_dssp CTS-S-HHHHHHTS--SSEEE--
T ss_pred ccCcCCHHHHHHhCCcCCcEEcC
Confidence 45667887776655 48888776
No 83
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=23.20 E-value=1e+02 Score=23.94 Aligned_cols=26 Identities=8% Similarity=0.204 Sum_probs=21.5
Q ss_pred CeEEeeecCceEEEEeCccccCCCCC
Q 023414 218 DFVPIEVKAGSLVLIHGDLIHQSFEN 243 (282)
Q Consensus 218 ~~v~~~~~~Gdvvlf~~~~~H~s~~n 243 (282)
......+++||++++.....|....+
T Consensus 73 ~~~~~~l~~GD~~~ip~g~~H~~~n~ 98 (146)
T smart00835 73 KVYDARLREGDVFVVPQGHPHFQVNS 98 (146)
T ss_pred eEEEEEecCCCEEEECCCCEEEEEcC
Confidence 34577899999999999999976543
No 84
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=23.15 E-value=84 Score=27.72 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=23.0
Q ss_pred CCeEEeeecCceEEEEeCc-cccCCCCCC
Q 023414 217 NDFVPIEVKAGSLVLIHGD-LIHQSFENQ 244 (282)
Q Consensus 217 ~~~v~~~~~~Gdvvlf~~~-~~H~s~~n~ 244 (282)
.....+.++||+|||+|.. ++||...-+
T Consensus 317 ~n~~~ikL~PGsvifiDNwRvLHgRe~ft 345 (371)
T KOG3889|consen 317 DNSIEIKLRPGSVIFIDNWRVLHGRESFT 345 (371)
T ss_pred cceEEEEecCceEEEEeceeEecCccccc
Confidence 4567889999999999876 899977654
No 85
>PF08111 Pea-VEAacid: Pea-VEAacid family; InterPro: IPR012593 This family consists of the PEA-VEAacid neuropeptides family. These neuropeptides are isolated from the abdominal perisympathetic organs of the American cockroach. These peptides are found together with Pea-YLS-amide and Pea-SKNacid, giving a unique neuropeptide pattern in abdominal perisympathetic organs. The functions of these neuropeptides are unknown [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=22.49 E-value=25 Score=15.89 Aligned_cols=8 Identities=50% Similarity=0.879 Sum_probs=5.4
Q ss_pred EEcCCCCC
Q 023414 185 AIPGSHKN 192 (282)
Q Consensus 185 ~ipGSH~~ 192 (282)
+.||||.-
T Consensus 3 ltpgshvd 10 (15)
T PF08111_consen 3 LTPGSHVD 10 (15)
T ss_pred ccCccchh
Confidence 45788854
No 86
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=22.47 E-value=52 Score=23.83 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=12.8
Q ss_pred eEEeeecCceEEEEeC
Q 023414 219 FVPIEVKAGSLVLIHG 234 (282)
Q Consensus 219 ~v~~~~~~Gdvvlf~~ 234 (282)
.....+++||+|||..
T Consensus 47 ~~~~~~~pGDlif~~~ 62 (105)
T PF00877_consen 47 VPISELQPGDLIFFKG 62 (105)
T ss_dssp EEGGG-TTTEEEEEEG
T ss_pred cchhcCCcccEEEEeC
Confidence 4456899999999998
No 87
>PRK11171 hypothetical protein; Provisional
Probab=22.05 E-value=1.3e+02 Score=26.17 Aligned_cols=40 Identities=5% Similarity=-0.039 Sum_probs=28.5
Q ss_pred EEeeecCceEEEEeCccccCCCCCCCCCCceEEEEE--EEeCC
Q 023414 220 VPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLH--VVETD 260 (282)
Q Consensus 220 v~~~~~~Gdvvlf~~~~~H~s~~n~s~~~R~~~~~~--~~~~~ 260 (282)
....+++||.+.|.....|+-. |.++.+-+.+.+. |.+..
T Consensus 101 ~~~~L~~GDsi~~p~~~~H~~~-N~g~~~a~~l~v~~~y~~~~ 142 (266)
T PRK11171 101 KTHALSEGGYAYLPPGSDWTLR-NAGAEDARFHWIRKRYEPVE 142 (266)
T ss_pred EEEEECCCCEEEECCCCCEEEE-ECCCCCEEEEEEEcCCeEcC
Confidence 4679999999999999999976 4454444444444 65554
No 88
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=21.63 E-value=1.8e+02 Score=25.88 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=31.2
Q ss_pred HHHHHHhhhCcEEEEcC-CCCHHHHHHHHHHHHHHHcc
Q 023414 9 SDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (282)
Q Consensus 9 ~~~~~~f~~~Gyvvi~~-~~~~~~v~~l~~~~~~~~~~ 45 (282)
.+..+++++-||+.|.| -++.++++++.+...+.++-
T Consensus 21 ~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~L 58 (303)
T PLN02403 21 SLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEE 58 (303)
T ss_pred HHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcC
Confidence 35667899999999887 78999999999988877754
No 89
>PTZ00273 oxidase reductase; Provisional
Probab=21.62 E-value=1.8e+02 Score=25.92 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=30.6
Q ss_pred HHHHHhhhCcEEEEcC-CCCHHHHHHHHHHHHHHHcc
Q 023414 10 DNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (282)
Q Consensus 10 ~~~~~f~~~Gyvvi~~-~~~~~~v~~l~~~~~~~~~~ 45 (282)
+..+++++.||+.|.| =++.+.++++.+...+.++.
T Consensus 28 ~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~l 64 (320)
T PTZ00273 28 QIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSL 64 (320)
T ss_pred HHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcC
Confidence 4458889999999987 78999999999998888764
No 90
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=21.57 E-value=1.6e+02 Score=23.53 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=28.5
Q ss_pred CeEEeeecCceEEEEeCccccCCCCCCC--CCCceEE
Q 023414 218 DFVPIEVKAGSLVLIHGDLIHQSFENQS--SKSRHAY 252 (282)
Q Consensus 218 ~~v~~~~~~Gdvvlf~~~~~H~s~~n~s--~~~R~~~ 252 (282)
....+.|.+|+.++|-+.=+|+.+-+.. ...|.++
T Consensus 110 ~e~~v~L~~G~faiFfP~e~H~P~c~~~~~~~IkKvV 146 (154)
T COG2731 110 DESTVELNPGMFAIFFPGEPHRPGCNVGVPEPIKKVV 146 (154)
T ss_pred cceEEEeCCCCEEEECCCCccccccccCCcceeEEEE
Confidence 5678999999999999999999876654 4566654
No 91
>PHA01625 hypothetical protein
Probab=21.39 E-value=1.6e+02 Score=25.04 Aligned_cols=47 Identities=21% Similarity=0.105 Sum_probs=30.8
Q ss_pred cCCcCceEEEEcCCCCCCcceeeeeCCCCeeecCCCCCCCCCCeEEeeecCceEEEEeCccccCC
Q 023414 176 ATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQS 240 (282)
Q Consensus 176 ~~~~~G~l~~ipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gdvvlf~~~~~H~s 240 (282)
+++.+|.|.++|.+-...+. ....+.+.+...+|+-++|++-..-++
T Consensus 200 itpG~G~LVyvpe~~~~~l~------------------S~DH~~i~~~~~~~~wLLfshP~Pr~~ 246 (249)
T PHA01625 200 VTPGQGALVYVPEDVTVKLE------------------SPDHNKVEFFVYRDSWLLFSHPRPRRS 246 (249)
T ss_pred EccCCceEEEccCCceEEEE------------------cCCCCceEeecCCCeEEEecCCCCccC
Confidence 46778888888775433211 122456778889999999987655443
No 92
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=21.29 E-value=1.9e+02 Score=26.36 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=31.2
Q ss_pred HHHHHHhhhCcEEEEcC-CCCHHHHHHHHHHHHHHHcc
Q 023414 9 SDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (282)
Q Consensus 9 ~~~~~~f~~~Gyvvi~~-~~~~~~v~~l~~~~~~~~~~ 45 (282)
++..+++++.||+.|.| -++.+.++++.+...+.++-
T Consensus 65 ~~l~~A~~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~L 102 (348)
T PLN00417 65 SKLHSALSTWGVVQVMNHGITEAFLDKIYKLTKQFFAL 102 (348)
T ss_pred HHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcC
Confidence 35567888999998776 78999999999999988874
No 93
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=20.87 E-value=1.9e+02 Score=26.19 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=32.4
Q ss_pred HHHHHHhhhCcEEEEcC-CCCHHHHHHHHHHHHHHHcc
Q 023414 9 SDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (282)
Q Consensus 9 ~~~~~~f~~~Gyvvi~~-~~~~~~v~~l~~~~~~~~~~ 45 (282)
++..+++++-||+.|.| -++.+.++++.+...+.++-
T Consensus 50 ~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~L 87 (341)
T PLN02984 50 EKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSL 87 (341)
T ss_pred HHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcC
Confidence 56788999999988887 79999999999999988864
No 94
>PLN02997 flavonol synthase
Probab=20.78 E-value=2e+02 Score=25.90 Aligned_cols=37 Identities=5% Similarity=0.011 Sum_probs=31.6
Q ss_pred HHHHHHhhhCcEEEEcC-CCCHHHHHHHHHHHHHHHcc
Q 023414 9 SDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (282)
Q Consensus 9 ~~~~~~f~~~Gyvvi~~-~~~~~~v~~l~~~~~~~~~~ 45 (282)
++..++.++.||+.|.| -++.+.++++.+...+.++-
T Consensus 48 ~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~L 85 (325)
T PLN02997 48 REVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFEL 85 (325)
T ss_pred HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcC
Confidence 45678889999998886 78999999999999988864
No 95
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.53 E-value=1.6e+02 Score=24.72 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=24.3
Q ss_pred CCCCHHHHHHhhhCcEEEEcCCCCHHHHHHHHHH
Q 023414 5 GNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQ 38 (282)
Q Consensus 5 ~~lt~~~~~~f~~~Gyvvi~~~~~~~~v~~l~~~ 38 (282)
+.++.+..+.-++.|..++++++++.|+....+.
T Consensus 87 P~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~ 120 (204)
T TIGR01182 87 PGLTPELAKHAQDHGIPIIPGVATPSEIMLALEL 120 (204)
T ss_pred CCCCHHHHHHHHHcCCcEECCCCCHHHHHHHHHC
Confidence 3456777777777888888888888877665543
No 96
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=20.48 E-value=77 Score=22.42 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=15.5
Q ss_pred HHHhhhCcEEEEcC-CCCHHHHHHHHHHHHH
Q 023414 12 LNFFNSQGYVVLES-FASDEEIEAMRKQMDH 41 (282)
Q Consensus 12 ~~~f~~~Gyvvi~~-~~~~~~v~~l~~~~~~ 41 (282)
+.-|.+.||||+.. -++.+++-++...+..
T Consensus 31 iNgYar~g~VifDe~kl~~e~lL~~le~~kp 61 (88)
T PF11491_consen 31 INGYARNGFVIFDESKLSKEELLEMLEEFKP 61 (88)
T ss_dssp --TTSS--EEE--B-S-SHHHH---HHHTTT
T ss_pred ecccccceEEEECcccCCHHHHHHHHHhcCh
Confidence 45578999999975 7899888777766664
No 97
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=20.47 E-value=1.9e+02 Score=22.51 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=32.1
Q ss_pred CCCCHHHHHHhhh--CcEEEEcC---CCCHHHHHHHHHHHHHH
Q 023414 5 GNLNSDNLNFFNS--QGYVVLES---FASDEEIEAMRKQMDHL 42 (282)
Q Consensus 5 ~~lt~~~~~~f~~--~Gyvvi~~---~~~~~~v~~l~~~~~~~ 42 (282)
..||+++.+++-+ .|+|-++| .+++++++++++.+.+.
T Consensus 82 ~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~ 124 (141)
T PF12419_consen 82 EELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKA 124 (141)
T ss_pred EECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhc
Confidence 4589999988874 78999998 78999999999998863
No 98
>PF11369 DUF3160: Protein of unknown function (DUF3160); InterPro: IPR022601 This group of proteins has no known function.
Probab=20.42 E-value=85 Score=31.15 Aligned_cols=19 Identities=26% Similarity=0.679 Sum_probs=17.0
Q ss_pred CCHHHHHHhhhCcEEEEcC
Q 023414 7 LNSDNLNFFNSQGYVVLES 25 (282)
Q Consensus 7 lt~~~~~~f~~~Gyvvi~~ 25 (282)
||+++++.+.+|||||+.+
T Consensus 1 l~~~~~~~L~~NgFvv~~~ 19 (630)
T PF11369_consen 1 LSDEQKEMLSKNGFVVIEN 19 (630)
T ss_pred CCHHHHHHHHhCCEEEEec
Confidence 6899999999999999944
No 99
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=20.42 E-value=2.8e+02 Score=22.33 Aligned_cols=36 Identities=11% Similarity=-0.014 Sum_probs=28.8
Q ss_pred CCeEEeeecCceEEEEeCccccCCCCCCCCCCceEE
Q 023414 217 NDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAY 252 (282)
Q Consensus 217 ~~~v~~~~~~Gdvvlf~~~~~H~s~~n~s~~~R~~~ 252 (282)
.....+.+++|..|.++..+||+..--.....++++
T Consensus 104 ~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~v 139 (162)
T PRK03606 104 GTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFLV 139 (162)
T ss_pred cceEEEEecCCcEEEeCCCcccccccccCCCceEEE
Confidence 457889999999999999999987765555566633
No 100
>PLN02485 oxidoreductase
Probab=20.40 E-value=2e+02 Score=25.76 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=31.3
Q ss_pred CHHHHHHhhhCcEEEEcC-CCCHHHHHHHHHHHHHHHcc
Q 023414 8 NSDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (282)
Q Consensus 8 t~~~~~~f~~~Gyvvi~~-~~~~~~v~~l~~~~~~~~~~ 45 (282)
.++..++.++.||+.|.| =++.+.++++.+...+.++.
T Consensus 35 ~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~l 73 (329)
T PLN02485 35 VRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFEL 73 (329)
T ss_pred HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcC
Confidence 345567888999999886 68999999999999988764
No 101
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=20.34 E-value=74 Score=27.03 Aligned_cols=27 Identities=11% Similarity=0.284 Sum_probs=23.1
Q ss_pred CCCCCCCHHHHHHhhhCcEEEEcCCCC
Q 023414 2 GLAGNLNSDNLNFFNSQGYVVLESFAS 28 (282)
Q Consensus 2 ~~~~~lt~~~~~~f~~~Gyvvi~~~~~ 28 (282)
+|++.+|++..+.+++.|.+++|+++.
T Consensus 135 gAN~~~t~~a~~~L~~rGi~~~PD~~a 161 (227)
T cd01076 135 AANGPTTPEADEILHERGVLVVPDILA 161 (227)
T ss_pred CCCCCCCHHHHHHHHHCCCEEEChHHh
Confidence 467889999999999999999998653
No 102
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=20.24 E-value=92 Score=27.06 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=22.5
Q ss_pred CCCCCCCHHHHHHhhhCcEEEEcCCCC
Q 023414 2 GLAGNLNSDNLNFFNSQGYVVLESFAS 28 (282)
Q Consensus 2 ~~~~~lt~~~~~~f~~~Gyvvi~~~~~ 28 (282)
+|++++|++..+.+++.|.+++|+++.
T Consensus 153 gAN~p~t~~a~~~L~~rGI~vvPD~la 179 (254)
T cd05313 153 GANMPCTAEAIEVFRQAGVLFAPGKAA 179 (254)
T ss_pred CCCCCCCHHHHHHHHHCCcEEECchhh
Confidence 467888999999999999999997653
Done!