BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023416
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 19 QDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLV 78
++I+ V + R D G+G SD+P +DY D +++ I A V E LV
Sbjct: 49 RNIIPHVAPSH-RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----VGLEEVVLV 103
Query: 79 IFGGGHAATLTVRAAKKNLVKPTAIAAVA-----PTW 110
I G A L AK+N + IA + PTW
Sbjct: 104 IHDWGSA--LGFHWAKRNPERVKGIACMEFIRPIPTW 138
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 19 QDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLV 78
++I+ V + R D G+G SD+P +DY D +++ I A + E LV
Sbjct: 49 RNIIPHVAPSH-RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLV 103
Query: 79 IFGGGHAATLTVRAAKKNLVKPTAIAAVA-----PTW 110
I G A L AK+N + IA + PTW
Sbjct: 104 IHDWGSA--LGFHWAKRNPERVKGIACMEFIRPFPTW 138
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 19 QDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLV 78
++I+ V + R D G+G SD+P +DY D +++ I A + E LV
Sbjct: 49 RNIIPHVAPSH-RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLV 103
Query: 79 IFGGGHAATLTVRAAKKNLVKPTAIAAVA-----PTW 110
I G A L AK+N + IA + PTW
Sbjct: 104 IHDWGSA--LGFHWAKRNPERVKGIACMEFIRPFPTW 138
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 19 QDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLV 78
++I+ V + R D G+G SD+P +DY D +++ I A + E LV
Sbjct: 46 RNIIPHVAPSH-RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLV 100
Query: 79 IFGGGHAATLTVRAAKKNLVKPTAIAAVA-----PTW 110
I G A L AK+N + IA + PTW
Sbjct: 101 IHDWGSA--LGFHWAKRNPERVKGIACMEFIRPFPTW 135
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 19 QDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLV 78
++I+ V + R D G+G SD+P +DY D +++ I A + E LV
Sbjct: 49 RNIIPHVAPSH-RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLV 103
Query: 79 IFGGGHAATLTVRAAKKNLVKPTAIAAVA-----PTW 110
I G A L AK+N + IA + PTW
Sbjct: 104 IHDWGSA--LGFHWAKRNPERVKGIACMEFIRPIPTW 138
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 19 QDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLV 78
++I+ V + R D G+G SD+P +DY D +++ I A + E LV
Sbjct: 49 RNIIPHVAPSH-RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLV 103
Query: 79 IFGGGHAATLTVRAAKKNLVKPTAIAAVA-----PTW 110
I G A L AK+N + IA + PTW
Sbjct: 104 IHDWGSA--LGFHWAKRNPERVKGIACMEFIRPIPTW 138
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 19 QDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLV 78
++I+ V + R D G+G SD+P +DY D +++ I A + E LV
Sbjct: 49 RNIIPHVAPSH-RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLV 103
Query: 79 IFGGGHAATLTVRAAKKNLVKPTAIAAVA-----PTW 110
I G A L AK+N + IA + PTW
Sbjct: 104 IHDWGSA--LGFHWAKRNPERVKGIACMEFIRPFPTW 138
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 19 QDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLV 78
++I+ V + R D G+G SD+P +DY D +++ I A + E LV
Sbjct: 49 RNIIPHVAPSH-RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLV 103
Query: 79 IFGGGHAATLTVRAAKKNLVKPTAIAAVA-----PTW 110
I G A L AK+N + IA + PTW
Sbjct: 104 IHDWGSA--LGFHWAKRNPERVKGIACMEFIRPIPTW 138
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 19 QDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLV 78
++I+ V + R D G+G SD+P +DY D +++ I A + E LV
Sbjct: 49 RNIIPHVAPSH-RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLV 103
Query: 79 IFGGGHAATLTVRAAKKNLVKPTAIAAVA-----PTW 110
I G A L AK+N + IA + PTW
Sbjct: 104 IHDWGSA--LGFHWAKRNPERVKGIACMEFIRPIPTW 138
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 19 QDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLV 78
++I+ V + R D G+G SD+P +DY D +++ I A + E LV
Sbjct: 49 RNIIPHVAPSH-RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLV 103
Query: 79 IFGGGHAATLTVRAAKKNLVKPTAIAAVA-----PTW 110
I G A L AK+N + IA + PTW
Sbjct: 104 IHDWGSA--LGFHWAKRNPERVKGIACMEFIRPIPTW 138
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 19 QDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLV 78
++I+ V + R D G+G SD+P +DY D +++ I A + E LV
Sbjct: 46 RNIIPHVAPSH-RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLV 100
Query: 79 IFGGGHAATLTVRAAKKNLVKPTAIAAVA-----PTW 110
I G A L AK+N + IA + PTW
Sbjct: 101 IHDWGSA--LGFHWAKRNPERVKGIACMEFIRPIPTW 135
>pdb|3KW3|A Chain A, Crystal Structure Of Alanine Racemase From Bartonella
Henselae With Covalently Bound Pyridoxal Phosphate
pdb|3KW3|B Chain B, Crystal Structure Of Alanine Racemase From Bartonella
Henselae With Covalently Bound Pyridoxal Phosphate
Length = 376
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 1 MIPTISDVSTVEEWRLVAQDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEK--- 57
+IP ++ ST+E+W+ + Q ++ + T + GL + K+ N + EK
Sbjct: 114 IIPLLNSWSTIEDWQTLCQKKNKKFPAIIQVDTNMSRLGLDKKELQKLIKNPTIFEKAEI 173
Query: 58 --FVVDLINAPDSPVSSSESDLVIF 80
+ L N D+ SS+ L F
Sbjct: 174 KYILSHLANGEDASHSSNNKQLAAF 198
>pdb|3QAT|A Chain A, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
pdb|3QAT|B Chain B, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
Length = 318
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 1 MIPTISDVSTVEEW---RLVAQDIVQRVGKVNWRATIVDW 37
++P I++VS + E R+V+ + Q G+V WR TI +W
Sbjct: 231 IVPLIANVSVIPESDPERIVSLLVQQVTGRVRWRETI-EW 269
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 17/96 (17%)
Query: 85 AATLTVRAAKKNLVKPTAIAAVAPTWAGPLPIVFGRDSSMETRYGLLRGTLRAPGVGWMM 144
+ ++T A +V+P IA + + G+D S T + L G G+ +
Sbjct: 12 SESITAPKADSTVVEPRKIALITG--------ITGQDGSYLTEFLL--------GKGYEV 55
Query: 145 YNMLVSNEKAIQSQYKSHVYSNPDNVTPGIVESRYA 180
+ L+ +Q +H+Y +P NV +++ YA
Sbjct: 56 HG-LIRRSSNFNTQRINHIYIDPHNVNKALMKLHYA 90
>pdb|2C7B|A Chain A, The Crystal Structure Of Este1, A New Thermophilic And
Thermostable Carboxylesterase Cloned From A Metagenomic
Library
pdb|2C7B|B Chain B, The Crystal Structure Of Este1, A New Thermophilic And
Thermostable Carboxylesterase Cloned From A Metagenomic
Library
Length = 311
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 211 LFADLEGKLPLLVVSTEGSPRRSKAEMEALKGAKGVTKFVEV 252
L ADL G P LVV+ E P R + E+ A K ++ V V
Sbjct: 233 LLADLGGLPPALVVTAEYDPLRDEGELYAYKXKASGSRAVAV 274
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 9 STVEEWRLVAQDIVQRVGKVNWRATIV--DWPGLGYSDRPKMDYNADVMEKFVVDLIN-- 64
T EW + ++ +R T++ D PGLG S+ PK Y+ + + ++ L
Sbjct: 41 QTWYEWHQLMPELAKRF-------TVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKLARQF 93
Query: 65 APDSPVSSSESDLVIFG 81
+PD P D+ I+
Sbjct: 94 SPDRPFDLVAHDIGIWN 110
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 10 TVEEWRLVAQDIVQRVGKVNWRATIV--DWPGLGYSDRPKMDYNADVMEKFVVDLIN--A 65
T EW + ++ +R T++ D PGLG S+ PK Y+ + + ++ L +
Sbjct: 42 TWYEWHQLMPELAKRF-------TVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKLARQFS 94
Query: 66 PDSPVSSSESDLVIF 80
PD P D+ I+
Sbjct: 95 PDRPFDLVAHDIGIW 109
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 10 TVEEWRLVAQDIVQRVGKVNWRATIV--DWPGLGYSDRPKMDYNADVMEKFVVDLIN--A 65
T EW + ++ +R T++ D PGLG S+ PK Y+ + + ++ L +
Sbjct: 42 TWYEWHQLMPELAKRF-------TVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKLARQFS 94
Query: 66 PDSPVSSSESDLVIF 80
PD P D+ I+
Sbjct: 95 PDRPFDLVAHDIGIW 109
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 29 NWRATIV-----------DWPGLGYSDRPK-MDYNADVMEKFVVDLINAPDSPVSSSESD 76
NWR TI D G G++DRP+ +Y+ D ++ +++A + + +
Sbjct: 43 NWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKDSWVDHIIGIMDALE--IEKAHIV 100
Query: 77 LVIFGGGHAATLTVRAAKK 95
FGGG A +R +++
Sbjct: 101 GNAFGGGLAIATALRYSER 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,283,403
Number of Sequences: 62578
Number of extensions: 339061
Number of successful extensions: 999
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 36
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)