BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023416
(282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48520|DPOD2_ARATH DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2
PE=2 SV=2
Length = 440
Score = 34.7 bits (78), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 93 AKKNLVKPTAIAAVAPTWAGPLPI--VFGRDSSMETRYGLLRGTLRAPGVGWMMYNMLV- 149
A+ +L++ T + ++APTW LP+ V G + E ++ GTL M V
Sbjct: 41 ARLHLMR-TLLYSLAPTWKSHLPVCKVLGLEKGKEC---IIVGTL----FKHMKLKPCVL 92
Query: 150 ---SNEKAIQSQYKSHVYSNPDNVTPGIVESRYALTKRKGARYVPAAFLTGLLDPVNSRE 206
S E+++ K H + +PD+ I+E K G+ PA ++TG++ ++ +E
Sbjct: 93 DEYSKERSVTPLVKPHNFMHPDDNL--ILEDESGRVKLAGSALSPAIYVTGVVVALHGKE 150
>sp|P0CP26|NOP58_CRYNJ Nucleolar protein 58 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=NOP58 PE=3
SV=1
Length = 568
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 2 IPTISDVSTVEEWRLVAQDIVQRVGKVNWRATIVDWPGLGYS-DRPKMDYNADVMEKFVV 60
IP +SD ST + +R + Q + +G V+ + GLG+S R K+ ++ D ++ V+
Sbjct: 115 IPVLSDSSTQDLYRGIRQQLASLLGGVDQKDLNTMSLGLGHSLSRFKLKFSTDKVDTMVI 174
Query: 61 DLINAPD 67
I D
Sbjct: 175 QAIALLD 181
>sp|P0CP27|NOP58_CRYNB Nucleolar protein 58 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=NOP58 PE=3 SV=1
Length = 565
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 2 IPTISDVSTVEEWRLVAQDIVQRVGKVNWRATIVDWPGLGYS-DRPKMDYNADVMEKFVV 60
IP +SD ST + +R + Q + +G V+ + GLG+S R K+ ++ D ++ V+
Sbjct: 115 IPVLSDSSTQDLYRGIRQQLASLLGGVDQKDLNTMSLGLGHSLSRFKLKFSTDKVDTMVI 174
Query: 61 DLINAPD 67
I D
Sbjct: 175 QAIALLD 181
>sp|B3H003|RDGC_ACTP7 Recombination-associated protein RdgC OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) GN=rdgC PE=3
SV=1
Length = 302
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 167 PDNVTPGIVESRYALTKRKGARYVPAAFLTGLLDPV--------NSREEFLQLFADLEGK 218
P NV E R A+ + K AR + + D V S+ +F ++ DL+ +
Sbjct: 75 PTNVIKKETEERIAVLEEKEARKLKKTEKQAIKDDVVAMLLPRAFSKHQFTAIWLDLDAQ 134
Query: 219 LPLLVVSTEGSPRRSKAEMEALKGAKGVTKFVEVPGALLPQEEYPAMVAQ 268
L V GS +R++ + L+ G V + ALLP E +A+
Sbjct: 135 L---VYVDAGSSKRAEDTLALLRKTLGSLPVVPISFALLPSEVMTNWIAK 181
>sp|B0BS66|RDGC_ACTPJ Recombination-associated protein RdgC OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) GN=rdgC PE=3
SV=1
Length = 302
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 167 PDNVTPGIVESRYALTKRKGARYVPAAFLTGLLDPV--------NSREEFLQLFADLEGK 218
P NV E R A+ + K AR + + D V S+ +F ++ DL+ +
Sbjct: 75 PANVIKKETEERIAVLEEKEARKLKKTEKQAIKDDVVAMLLPRAFSKHQFTAIWLDLDAQ 134
Query: 219 LPLLVVSTEGSPRRSKAEMEALKGAKGVTKFVEVPGALLPQEEYPAMVAQ 268
L V GS +R++ + L+ G V + ALLP E +A+
Sbjct: 135 L---VYVDAGSSKRAEDTLALLRKTLGSLPVVPISFALLPSEVMTNWIAK 181
>sp|A3MYN3|RDGC_ACTP2 Recombination-associated protein RdgC OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=rdgC PE=3
SV=1
Length = 302
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 167 PDNVTPGIVESRYALTKRKGARYVPAAFLTGLLDPV--------NSREEFLQLFADLEGK 218
P NV E R A+ + K AR + + D V S+ +F ++ DL+ +
Sbjct: 75 PANVIKKETEERIAVLEEKEARKLKKTEKQAIKDDVVAMLLPRAFSKHQFTAIWLDLDAQ 134
Query: 219 LPLLVVSTEGSPRRSKAEMEALKGAKGVTKFVEVPGALLPQEEYPAMVAQ 268
L V GS +R++ + L+ G V + ALLP E +A+
Sbjct: 135 L---VYVDAGSSKRAEDTLALLRKTLGSLPVVPISFALLPSEVMTNWIAK 181
>sp|O89029|MATN4_MOUSE Matrilin-4 OS=Mus musculus GN=Matn4 PE=2 SV=1
Length = 624
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 66/161 (40%), Gaps = 28/161 (17%)
Query: 101 TAIAAVAP-TWAGPLPIVFGRDSS-------METRYGLLRGTLRAPGVGWMMYNMLVSNE 152
T + + P + GPL +VF DSS ET L G LR+ VG + V
Sbjct: 21 TQLQSAGPRCYNGPLDLVFMIDSSRSVRPFEFETMRQFLVGLLRSLDVGLNATRVGVI-- 78
Query: 153 KAIQSQYKSHVYSNPDNVTPGIVESRYALTKRKGARYVPAAFLTGLLDPVNSREEFLQLF 212
QY S V S V P SR +R VP A G + + + F
Sbjct: 79 -----QYSSQVQS----VFPLGAFSRREDMERAIRAVVPLA--QGTMTGLAIQYAMNVAF 127
Query: 213 ADLEGKLP-------LLVVSTEGSPRRSKAEMEALKGAKGV 246
++ EG P +LV+ T+G P+ AE+ A A+G+
Sbjct: 128 SEAEGARPSEERVPRVLVIVTDGRPQDRVAEVAAQARARGI 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,834,322
Number of Sequences: 539616
Number of extensions: 4294809
Number of successful extensions: 12397
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 12394
Number of HSP's gapped (non-prelim): 16
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)