Citrus Sinensis ID: 023417

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--

MSVSGLIGSPSRCCLRIPVCSSGSVRRFSAFTSPGKPKDQIKIAYLERWYWAGSAQGCKKQRTYSIKCAMDASYGDMSDGSTAIFPRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK

cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccc

ccEcEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcc

msvsgligspsrcclripvcssgsvrrfsaftspgkpkdqIKIAYLERWYwagsaqgckkqRTYSIKcamdasygdmsdgstaifprinvrdpykrlgisreASEEEIQAARNFLVQKyaghkpsidAIESAHDKIIMQKFyerrnpkidikKKVREVRQSRVMQAVMSrfqtpstkiIIKTSVAFLVIGVLTvlfpteegptLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMvavippipiikglrsfeVTTSLITYVLLWVSSTYLK

msvsgligspsrcclRIPVCSSGSVRrfsaftspgkpkdqIKIAYLERWYWAgsaqgckkqRTYSIKCAMDASYGdmsdgstaifprinvrdpYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQkfyerrnpkidikkkvrevRQSRVMQAvmsrfqtpstkiiIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK

**********SRCCLRIPVCSSGSVRRFSAFT*****KDQIKIAYLERWYWAGSAQGCKKQRTYSIKCAMDASYGDMSDGSTAIFPRINVRDPYKRLGI********IQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTY**

**********S******************************************************************************VRDPYKRLGISREASEEEIQAARNFLV**********DAIESAHDKIIM*********************************QTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK

********SPSRCCLRIPVCSSGSVRRFSAFTSPGKPKDQIKIAYLERWYWAGSAQGCKKQRTYSIKCAMDASYGDMSDGSTAIFPRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK

****GLIGSPSRCCLRIPVCS************************LERWYWAGSAQGCKKQRTYSIKCAMDASYGDMSDGSTAIFPRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		282
255581398		318	conserved hypothetical protein [Ricinus	0.968	0.858	0.746	1e-116
359476644		283	PREDICTED: uncharacterized protein LOC10	0.992	0.989	0.727	1e-114
449457558		279	PREDICTED: uncharacterized protein LOC10	0.985	0.996	0.727	1e-113
359495671		281	PREDICTED: uncharacterized protein LOC10	0.992	0.996	0.720	1e-112
356502938		281	PREDICTED: uncharacterized protein LOC10	0.992	0.996	0.713	1e-109
297735929		259	unnamed protein product [Vitis vinifera]	0.918	1.0	0.705	1e-107
388520479		282	unknown [Lotus japonicus]	1.0	1.0	0.659	1e-104
357518133		282	hypothetical protein MTR_8g076220 [Medic	0.996	0.996	0.693	1e-102
388493436		282	unknown [Medicago truncatula]	0.996	0.996	0.690	1e-101
297735932		226	unnamed protein product [Vitis vinifera]	0.790	0.986	0.808	4e-96

>gi\|255581398\|ref\|XP_002531507.1\| conserved hypothetical protein [Ricinus communis] gi\|223528860\|gb\|EEF30861.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/284 (74%), Positives = 241/284 (84%), Gaps = 11/284 (3%)

Query: 1   MSVSGLIGSPSRCCLRIPVCSSGS-VRRFSAFTSPGKPKDQIKIAYLERWYWAGSAQGCK 59
           M+VSGL G PSRCCL IPV    S  RR SAFT  G+PK++I    ++R           
Sbjct: 44  MTVSGLTGRPSRCCLWIPVSRPLSFCRRVSAFTCVGEPKERINFLRIDR---------SN 94

Query: 60  KQRTYSIKCAMDASYG-DMSDGSTAIFPRINVRDPYKRLGISREASEEEIQAARNFLVQK 118
            ++T+ IKCAMDASYG DM++    IFPRI+VRDPYKRLGISREASE+EIQ ARNFLV K
Sbjct: 95  VKKTHLIKCAMDASYGGDMTNNQPVIFPRIHVRDPYKRLGISREASEDEIQGARNFLVNK 154

Query: 119 YAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVMSRFQTPSTKI 178
           Y+GHKPS+DAIESAHDKIIMQKFYER+NPKIDI KKVREV+QSR +QAV SRF+TPST  
Sbjct: 155 YSGHKPSVDAIESAHDKIIMQKFYERKNPKIDIGKKVREVKQSRFVQAVTSRFRTPSTFT 214

Query: 179 IIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFS 238
           I+KTS+AFLV+G+LTVLFPTEEGPTLQVAISL+AT+YFIH+RLKSK+RAFLY AGAFIFS
Sbjct: 215 IVKTSIAFLVLGILTVLFPTEEGPTLQVAISLMATIYFIHDRLKSKVRAFLYSAGAFIFS 274

Query: 239 WLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK 282
           WLLGTFLMV+VIPP+P IKGLRSFEVTTSLITYVLLWVSSTYLK
Sbjct: 275 WLLGTFLMVSVIPPLPFIKGLRSFEVTTSLITYVLLWVSSTYLK 318

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359476644\|ref\|XP_003631874.1\| PREDICTED: uncharacterized protein LOC100852880 [Vitis vinifera] gi\|297735046\|emb\|CBI17408.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449457558\|ref\|XP_004146515.1\| PREDICTED: uncharacterized protein LOC101208655 [Cucumis sativus] gi\|449499948\|ref\|XP_004160962.1\| PREDICTED: uncharacterized LOC101208655 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|359495671\|ref\|XP_002272554.2\| PREDICTED: uncharacterized protein LOC100259506 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356502938\|ref\|XP_003520271.1\| PREDICTED: uncharacterized protein LOC100803419 [Glycine max]	Back alignment and taxonomy information

>gi\|297735929\|emb\|CBI18705.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|388520479\|gb\|AFK48301.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|357518133\|ref\|XP_003629355.1\| hypothetical protein MTR_8g076220 [Medicago truncatula] gi\|355523377\|gb\|AET03831.1\| hypothetical protein MTR_8g076220 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|388493436\|gb\|AFK34784.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297735932\|emb\|CBI18708.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		282
TAIR\|locus:2080883		278	AT3G51140 "AT3G51140" [Arabido	0.975	0.989	0.621	2.7e-84
TAIR\|locus:2178267		258	CDF1 "CELL GROWTH DEFECT FACTO	0.751	0.821	0.413	1.1e-39

TAIR\|locus:2080883 AT3G51140 "AT3G51140" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
 Identities = 177/285 (62%), Positives = 216/285 (75%)

Query:     1 MSVSGLIGSPSRCCLRIPVCSSGSVRRFS-AFTSPGKPKDQIKIAYLERWYWAGSAQGC- 58
             M+ SGL  +P R   R      G+ +R S AFT   K  ++        W    S++   
Sbjct:     1 MNASGLTVTPPRFHFRWRSDRFGTSQRSSQAFTVLSKLNNRNSA-----WPVLKSSRLAL 55

Query:    59 -KKQRTYSIKCAMDASYGDMSDGSTAIFPRINVRDPYKRLGISREASEEEIQAARNFLVQ 117
               ++R   I  AM AS+GDM+D S AIFPRINV+DPYKRLGISR ASE+EIQ ARNFL+Q
Sbjct:    56 PTQRRNAMITRAMSASFGDMADDSAAIFPRINVKDPYKRLGISRMASEDEIQGARNFLIQ 115

Query:   118 KYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVMSRFQTPSTK 177
             +YAGHKPS+DAIESAHDKIIMQKF+ER+NPKIDI KKVR+VRQS+V+  V  RFQTP   
Sbjct:   116 QYAGHKPSVDAIESAHDKIIMQKFHERKNPKIDISKKVRQVRQSKVVNFVFERFQTPPNA 175

Query:   178 IIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIF 237
             +++KT+V F V+GVLTVLFPTEEGPTLQV +SLIAT YFIH+RL+ K+  FLYGAGAFIF
Sbjct:   176 VLVKTAVTFAVLGVLTVLFPTEEGPTLQVLLSLIATFYFIHQRLQKKLWTFLYGAGAFIF 235

Query:   238 SWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK 282
             SWL+GTFLMV+VIPP   IKG R FEV +SL++YVLLWV+S+YL+
Sbjct:   236 SWLVGTFLMVSVIPPF--IKGPRGFEVMSSLLSYVLLWVASSYLR 278

GO:0008150 "biological_process" evidence=ND

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

TAIR\|locus:2178267 CDF1 "CELL GROWTH DEFECT FACTOR 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		282
pfam11833		193	pfam11833, DUF3353, Protein of unknown function (D	2e-64
PRK14276		380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	0.002
PRK14296		372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	0.004

>gnl\|CDD\|221252 pfam11833, DUF3353, Protein of unknown function (DUF3353)	Back alignment and domain information

 Score =  199 bits (509), Expect = 2e-64
 Identities = 65/195 (33%), Positives = 105/195 (53%), Gaps = 15/195 (7%)

Query: 100 SREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVR 159
           S +AS EEIQAARN L+ +YAG + +   IE+A+D I+MQ+  ER+  KI + + +R   
Sbjct: 1   SEDASFEEIQAARNRLLAEYAGDEQARAKIEAAYDAILMQRLRERQEGKIKVPEAIRYAE 60

Query: 160 QSR-------------VMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQV 206
           ++               +Q ++  F  PS + ++   V F ++ +L +L     GP LQ+
Sbjct: 61  RAGKPAASKPVNPSPAWLQRLLPSFDLPSGQGLLIRLVLFGLLALLLLLQGPPSGPQLQL 120

Query: 207 AISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTT 266
           A+   A +YF++ + +   RA L+  G  +   LLG+ L V + P   I+ G  S E   
Sbjct: 121 ALGTGACIYFLNRKGRRFGRALLWSLGGLVVGLLLGSLLAVLLPP--FILPGSLSPEQIQ 178

Query: 267 SLITYVLLWVSSTYL 281
           SL  Y+LLW+ S +L
Sbjct: 179 SLPAYLLLWLGSLFL 193

This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length. Length = 193

>gnl\|CDD\|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional	Back alignment and domain information

>gnl\|CDD\|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		282
PF11833		194	DUF3353: Protein of unknown function (DUF3353); In	100.0
COG0484		371	DnaJ DnaJ-class molecular chaperone with C-termina	99.27
smart00271		60	DnaJ DnaJ molecular chaperone homology domain.	99.18
KOG0713		336	consensus Molecular chaperone (DnaJ superfamily) [	99.15
PF00226		64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.14
PTZ00037		421	DnaJ_C chaperone protein; Provisional	99.13
PRK09430		267	djlA Dna-J like membrane chaperone protein; Provis	99.1
cd06257		55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.1
PRK14296		372	chaperone protein DnaJ; Provisional	99.09
PTZ00100		116	DnaJ chaperone protein; Provisional	99.07
PRK14288		369	chaperone protein DnaJ; Provisional	99.07
PRK14299		291	chaperone protein DnaJ; Provisional	99.05
PRK14276		380	chaperone protein DnaJ; Provisional	99.05
PRK14287		371	chaperone protein DnaJ; Provisional	99.03
PRK14286		372	chaperone protein DnaJ; Provisional	99.03
PRK14282		369	chaperone protein DnaJ; Provisional	99.02
PRK14283		378	chaperone protein DnaJ; Provisional	99.01
PRK14280		376	chaperone protein DnaJ; Provisional	99.01
PRK14279		392	chaperone protein DnaJ; Provisional	99.0
KOG0721		230	consensus Molecular chaperone (DnaJ superfamily) [	99.0
PRK10767		371	chaperone protein DnaJ; Provisional	98.99
PRK14295		389	chaperone protein DnaJ; Provisional	98.98
PRK14294		366	chaperone protein DnaJ; Provisional	98.98
PRK14277		386	chaperone protein DnaJ; Provisional	98.96
PRK14300		372	chaperone protein DnaJ; Provisional	98.95
PRK14285		365	chaperone protein DnaJ; Provisional	98.95
PRK14297		380	chaperone protein DnaJ; Provisional	98.95
PRK10266		306	curved DNA-binding protein CbpA; Provisional	98.94
PRK14301		373	chaperone protein DnaJ; Provisional	98.93
PRK14298		377	chaperone protein DnaJ; Provisional	98.92
PRK14291		382	chaperone protein DnaJ; Provisional	98.92
PRK14278		378	chaperone protein DnaJ; Provisional	98.92
PRK14289		386	chaperone protein DnaJ; Provisional	98.9
PRK14281		397	chaperone protein DnaJ; Provisional	98.9
PRK14284		391	chaperone protein DnaJ; Provisional	98.88
PHA03102		153	Small T antigen; Reviewed	98.87
TIGR02349		354	DnaJ_bact chaperone protein DnaJ. This model repre	98.86
PRK14290		365	chaperone protein DnaJ; Provisional	98.83
PRK14292		371	chaperone protein DnaJ; Provisional	98.82
PRK14293		374	chaperone protein DnaJ; Provisional	98.81
KOG0715		288	consensus Molecular chaperone (DnaJ superfamily) [	98.78
KOG0712		337	consensus Molecular chaperone (DnaJ superfamily) [	98.74
COG2214		237	CbpA DnaJ-class molecular chaperone [Posttranslati	98.71
KOG0719		264	consensus Molecular chaperone (DnaJ superfamily) [	98.56
KOG0717		508	consensus Molecular chaperone (DnaJ superfamily) [	98.53
TIGR03835		871	termin_org_DnaJ terminal organelle assembly protei	98.43
PTZ00341		1136	Ring-infected erythrocyte surface antigen; Provisi	98.4
PHA02624		647	large T antigen; Provisional	98.4
KOG0691		296	consensus Molecular chaperone (DnaJ superfamily) [	98.36
KOG0716		279	consensus Molecular chaperone (DnaJ superfamily) [	98.28
COG5407		610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.27
KOG0718		546	consensus Molecular chaperone (DnaJ superfamily) [	98.23
PRK05014		171	hscB co-chaperone HscB; Provisional	98.22
PRK01356		166	hscB co-chaperone HscB; Provisional	98.05
PRK00294		173	hscB co-chaperone HscB; Provisional	97.99
PRK03578		176	hscB co-chaperone HscB; Provisional	97.94
KOG0720		490	consensus Molecular chaperone (DnaJ superfamily) [	97.9
KOG0624		504	consensus dsRNA-activated protein kinase inhibitor	97.88
KOG0722		329	consensus Molecular chaperone (DnaJ superfamily) [	97.74
KOG0568		342	consensus Molecular chaperone (DnaJ superfamily) [	97.69
KOG0714		306	consensus Molecular chaperone (DnaJ superfamily) [	97.51
KOG0723		112	consensus Molecular chaperone (DnaJ superfamily) [	97.3
COG1076		174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.3
KOG0550		486	consensus Molecular chaperone (DnaJ superfamily) [	97.17
KOG1789		2235	consensus Endocytosis protein RME-8, contains DnaJ	96.98
KOG1150		250	consensus Predicted molecular chaperone (DnaJ supe	96.89
PF13446		62	RPT: A repeated domain in UCH-protein	96.65
PRK01773		173	hscB co-chaperone HscB; Provisional	96.58
TIGR00714		157	hscB Fe-S protein assembly co-chaperone HscB. This	95.57
PF03656		127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	94.1
COG5269		379	ZUO1 Ribosome-associated chaperone zuotin [Transla	91.69
PF06570		206	DUF1129: Protein of unknown function (DUF1129); In	91.53
PRK07668		254	hypothetical protein; Validated	89.31
PF11833		194	DUF3353: Protein of unknown function (DUF3353); In	87.52
COG4858		226	Uncharacterized membrane-bound protein conserved i	87.21

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised	Back alignment and domain information

Probab=100.00  E-value=4.3e-56  Score=394.90  Aligned_cols=180  Identities=37%  Similarity=0.597  Sum_probs=169.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhHHhhhhCCCCccchhhhhhhh-----------hhhhhhhh
Q 023417          100 SREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQ-----------SRVMQAVM  168 (282)
Q Consensus       100 s~~AS~eEI~~A~~rL~~~y~~D~~~~~~IEaAYD~Ilm~~L~~R~~Gki~vsk~ir~ad~-----------~~~~~wl~  168 (282)
                      ||||||||||+|||++++||.+|++.+++||+|||+|+|+||++||+|||+|++++||+|+           .+.++|++
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd~~~~~~IEaAYD~ILM~rL~~Rq~Gki~v~~~ir~ad~~~~~~~~~~~~~~~p~wl~   80 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGDEKSREAIEAAYDAILMERLRQRQKGKIKVPERIRYADREEPKPPNPKPSNPSPPWLQ   80 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHhhhccccccCCCCCCccchHHH
Confidence            7999999999999999999999999999999999999999999999999999999999987           13366777


Q ss_pred             hc---ccCCchHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHhh
Q 023417          169 SR---FQTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFL  245 (282)
Q Consensus       169 ~~---~~~Ps~~~i~~~~~~f~~L~~~~l~~~~~~~~~LqLAls~~a~iYfL~rK~kr~~RA~~l~lg~L~vG~~lGs~L  245 (282)
                      +.   |++|+.+++.+++++|++|++|+++++++++++||||+|+++||||||||+++++||++|++|+|++||++|+++
T Consensus        81 ~~~~~~~~P~~~~l~~~~~~f~~L~~~~~~~~~~~~~~l~Lal~~~~~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l  160 (194)
T PF11833_consen   81 RLLPSFDTPSSQDLLIRAAAFGALGLWSLLFPAASGPGLQLALGLGACIYFLNRKERKLGRAFLWTLGGLVVGLILGSLL  160 (194)
T ss_pred             hcccceeCCCcchHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            66   999999999999999999999999999889999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCcccccCCccHHHHHHHHHHHHHHHHhhcc
Q 023417          246 MVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYL  281 (282)
Q Consensus       246 ~~~~ip~~~~~~~~~s~e~i~Sl~t~vlLwl~ssfL  281 (282)
                      .+.+.+.+  .++++++|+++|+++|++||++|+||
T Consensus       161 ~~~l~~~~--~p~~~s~~~~~sl~~~i~lwl~s~fL  194 (194)
T PF11833_consen  161 ASWLPVDI--VPGPWSPEQLVSLFTYILLWLVSLFL  194 (194)
T ss_pred             Hhhccccc--CCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            87766655  45789999999999999999999997

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00271 DnaJ DnaJ molecular chaperone homology domain	Back alignment and domain information

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []	Back alignment and domain information

>PTZ00037 DnaJ_C chaperone protein; Provisional	Back alignment and domain information

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional	Back alignment and domain information

>cd06257 DnaJ DnaJ domain or J-domain	Back alignment and domain information

>PRK14296 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PTZ00100 DnaJ chaperone protein; Provisional	Back alignment and domain information

>PRK14288 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14299 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14276 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14287 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14286 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14282 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14283 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14280 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14279 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK10767 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14295 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14294 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14277 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14300 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14285 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14297 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK10266 curved DNA-binding protein CbpA; Provisional	Back alignment and domain information

>PRK14301 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14298 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14291 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14278 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14289 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14281 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14284 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PHA03102 Small T antigen; Reviewed	Back alignment and domain information

>TIGR02349 DnaJ_bact chaperone protein DnaJ	Back alignment and domain information

>PRK14290 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14292 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14293 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ	Back alignment and domain information

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional	Back alignment and domain information

>PHA02624 large T antigen; Provisional	Back alignment and domain information

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK05014 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PRK01356 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PRK00294 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PRK03578 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]	Back alignment and domain information

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13446 RPT: A repeated domain in UCH-protein	Back alignment and domain information

>PRK01773 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB	Back alignment and domain information

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []	Back alignment and domain information

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues	Back alignment and domain information

>PRK07668 hypothetical protein; Validated	Back alignment and domain information

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised	Back alignment and domain information

>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		282
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2cug_A		88	Mkiaa0962 protein; DNAJ-like domain, structural ge	5e-05
3lz8_A		329	Putative chaperone DNAJ; structure genomics, struc	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 51.8 bits (123), Expect = 1e-07
 Identities = 49/313 (15%), Positives = 91/313 (29%), Gaps = 101/313 (32%)

Query: 3   VSGLIGSPSRCCLRIPVCSSGSVRRFSAFTSPGKPKDQIKIAYLERWYWAGSAQGCKK-- 60
           + G++GS  +  + + VC S  V+    F          KI      +W      C    
Sbjct: 155 IDGVLGS-GKTWVALDVCLSYKVQCKMDF----------KI------FWLNLKN-CNSPE 196

Query: 61  ------QRTYSIKCAMDASYGDMSDGSTAIFPRINVRDPYKRLGISREASEEEIQAARNF 114
                 Q+       +D ++   SD S+ I  RI                       R  
Sbjct: 197 TVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRI----------------HSIQAELRRL 237

Query: 115 LVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREV--RQSRVMQAVMSRFQ 172
           L  K   ++  +  + +  +      F        ++  K+  +  R  +V   + +   
Sbjct: 238 LKSK--PYENCLLVLLNVQNAKAWNAF--------NLSCKIL-LTTRFKQVTDFLSA--A 284

Query: 173 TPSTKIIIKTSVAF-------LVIGVLTVLF---PTEEGPTLQVAISLIATM-------- 214
           T +   +   S+         L++  L       P E   T    +S+IA          
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 215 -YFIH---ERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIP---PIPIIKGLRSFEVTTS 267
             + H   ++L + I + L        +     F  ++V P    IP             
Sbjct: 345 DNWKHVNCDKLTTIIESSL---NVLEPAEYRKMFDRLSVFPPSAHIPT------------ 389

Query: 268 LITYVLLWVSSTY 280
            I   L+W     
Sbjct: 390 -ILLSLIWFDVIK 401

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88	Back alignment and structure

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		282
2ys8_A		90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.35
2cug_A		88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.35
2yua_A		99	Williams-beuren syndrome chromosome region 18 prot	99.35
1wjz_A		94	1700030A21RIK protein; J-domain, DNAJ like protein	99.33
2dn9_A		79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.3
2guz_A		71	Mitochondrial import inner membrane translocase su	99.29
2ctr_A		88	DNAJ homolog subfamily B member 9; J-domain, chape	99.28
2ctp_A		78	DNAJ homolog subfamily B member 12; J-domain, chap	99.27
2och_A		73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.26
1hdj_A		77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.26
2ctw_A		109	DNAJ homolog subfamily C member 5; J-domain, chape	99.24
2ctq_A		112	DNAJ homolog subfamily C member 12; J-domain, chap	99.24
2ej7_A		82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.23
2o37_A		92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.22
2dmx_A		92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.2
1faf_A		79	Large T antigen; J domain, HPD motif, anti-paralle	99.16
2lgw_A		99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.14
1iur_A		88	KIAA0730 protein; DNAJ like domain, riken structur	99.13
2qsa_A		109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.12
1bq0_A		103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.07
2l6l_A		155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.07
3apq_A		210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.02
1gh6_A		114	Large T antigen; tumor suppressor, oncoprotein, an	98.97
2qwo_B		92	Putative tyrosine-protein phosphatase auxilin; cha	98.93
3lz8_A		329	Putative chaperone DNAJ; structure genomics, struc	98.91
2pf4_E		174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	98.89
3hho_A		174	CO-chaperone protein HSCB homolog; structural geno	98.83
1n4c_A		182	Auxilin; four helix bundle, protein binding; NMR {	98.77
3ag7_A		106	Putative uncharacterized protein F9E10.5; J-domain	98.72
1fpo_A		171	HSC20, chaperone protein HSCB; molecular chaperone	98.71
3bvo_A		207	CO-chaperone protein HSCB, mitochondrial precurso;	98.71
2guz_B		65	Mitochondrial import inner membrane translocase su	98.69
3apo_A		780	DNAJ homolog subfamily C member 10; PDI family, th	98.57
3uo3_A		181	J-type CO-chaperone JAC1, mitochondrial; structura	98.49
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	96.9
2pzi_A		681	Probable serine/threonine-protein kinase PKNG; ATP	84.35

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

Probab=99.35  E-value=9.2e-13  Score=102.20  Aligned_cols=55  Identities=20%  Similarity=0.234  Sum_probs=48.1

Q ss_pred             CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCChh-------hHHHHHHHHHHHHhhHHhhh
Q 023417           90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHKP-------SIDAIESAHDKIIMQKFYER  144 (282)
Q Consensus        90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~~-------~~~~IEaAYD~Ilm~~L~~R  144 (282)
                      ..|+|++|||+++|+.+|||+||++|..+||||..       ++.+|+.||+.+....-|.+
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            47999999999999999999999999999999953       68899999999776554433

PyMOL of 2ys8

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1	Back alignment and structure

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A	Back alignment and structure

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1	Back alignment and structure

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}	Back alignment and structure

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1	Back alignment and structure

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}	Back alignment and structure

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1	Back alignment and structure

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}	Back alignment and structure

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A	Back alignment and structure

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}	Back alignment and structure

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}	Back alignment and structure

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1	Back alignment and structure

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A	Back alignment and structure

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A	Back alignment and structure

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C	Back alignment and structure

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J	Back alignment and structure

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}	Back alignment and structure

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1	Back alignment and structure

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}	Back alignment and structure

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}	Back alignment and structure

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		282
d1xbla_		75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	4e-05
d1wjza_		94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	6e-05
d1iura_		88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	2e-04
d1hdja_		77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	0.002

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75	Back information, alignment and structure


class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (90), Expect = 4e-05
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 91  RDPYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPK 148
           +D Y+ LG+S+ A E EI+ A   L  KY   +   D    A  K I + +    + +
Sbjct: 3   QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60

PyMOL of d1xbla_

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94	Back information, alignment and structure

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88	Back information, alignment and structure

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		282
d1wjza_		94	CSL-type zinc finger-containing protein 3 (J-domai	99.28
d1xbla_		75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.22
d1fafa_		79	Large T antigen, the N-terminal J domain {Murine p	99.18
d1hdja_		77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1iura_		88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.03
d1gh6a_		114	Large T antigen, the N-terminal J domain {Simian v	99.0
d1fpoa1		76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	98.85
d1nz6a_		98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	98.68
d2e74f1		32	PetM subunit of the cytochrome b6f complex {Mastig	82.36

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.1e-12  Score=101.27  Aligned_cols=60  Identities=17%  Similarity=0.159  Sum_probs=49.7

Q ss_pred             CCCCCCCCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------------hhHHHHHHHHHHHHhhHHh
Q 023417           83 AIFPRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------------PSIDAIESAHDKIIMQKFY  142 (282)
Q Consensus        83 ~~fpr~~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------------~~~~~IEaAYD~Ilm~~L~  142 (282)
                      -.+.....+|+|++|||+++||++||++||++|..+||||+              +.++.|++||+.+..+..|
T Consensus         8 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R   81 (94)
T d1wjza_           8 MALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETK   81 (94)
T ss_dssp             SCCSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHH
T ss_pred             chhhhhhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            34455566899999999999999999999999999999994              2367899999998664443

PyMOL of d1wjza_

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}	Back information, alignment and structure

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}	Back information, alignment and structure

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}	Back information, alignment and structure