Query 023418
Match_columns 282
No_of_seqs 166 out of 1468
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:52:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 2.1E-48 4.7E-53 341.8 29.8 246 31-282 63-330 (365)
2 PTZ00224 protein phosphatase 2 100.0 3.8E-45 8.2E-50 322.3 31.0 249 18-282 6-271 (381)
3 COG0631 PTC1 Serine/threonine 100.0 9.5E-46 2.1E-50 313.7 24.5 240 30-282 5-252 (262)
4 KOG0697 Protein phosphatase 1B 100.0 4.6E-44 9.9E-49 290.0 21.6 246 30-281 19-290 (379)
5 KOG0698 Serine/threonine prote 100.0 6E-43 1.3E-47 305.9 29.5 249 32-282 38-304 (330)
6 PF00481 PP2C: Protein phospha 100.0 5.9E-44 1.3E-48 303.3 16.8 236 34-274 1-254 (254)
7 cd00143 PP2Cc Serine/threonine 100.0 5.1E-40 1.1E-44 278.8 27.9 240 34-281 2-254 (254)
8 PRK14559 putative protein seri 100.0 4.8E-40 1.1E-44 304.9 26.8 241 31-282 373-635 (645)
9 smart00332 PP2Cc Serine/threon 100.0 4.5E-39 9.8E-44 273.5 29.1 240 31-279 4-255 (255)
10 KOG0699 Serine/threonine prote 100.0 6.5E-37 1.4E-41 256.8 19.6 156 123-282 327-503 (542)
11 KOG0700 Protein phosphatase 2C 100.0 1.8E-31 3.8E-36 229.0 19.5 209 61-269 96-378 (390)
12 KOG1323 Serine/threonine phosp 99.9 3.5E-26 7.7E-31 190.5 19.0 222 60-281 140-486 (493)
13 KOG1379 Serine/threonine prote 99.9 7.4E-25 1.6E-29 182.3 21.3 202 47-280 90-329 (330)
14 KOG0618 Serine/threonine phosp 99.9 1E-24 2.2E-29 203.2 16.4 265 7-282 498-772 (1081)
15 PF13672 PP2C_2: Protein phosp 99.9 1.8E-21 4E-26 160.9 14.2 179 38-251 3-194 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 2.8E-18 6.1E-23 139.8 22.7 184 33-266 4-192 (193)
17 TIGR02865 spore_II_E stage II 99.7 1.8E-16 4E-21 152.4 21.3 186 47-281 566-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.7 2.8E-14 6.2E-19 116.0 20.1 176 62-282 2-193 (193)
19 COG2208 RsbU Serine phosphatas 98.8 2.2E-06 4.9E-11 76.7 21.4 187 47-282 161-366 (367)
20 PRK10693 response regulator of 85.6 13 0.00028 32.3 10.7 104 48-158 150-259 (303)
21 PF09436 DUF2016: Domain of un 66.5 3.8 8.2E-05 27.3 1.4 20 221-240 23-42 (72)
22 COG2168 DsrH Uncharacterized c 60.7 5.9 0.00013 27.9 1.6 48 225-275 25-72 (96)
23 COG3700 AphA Acid phosphatase 42.9 50 0.0011 26.4 4.3 45 225-269 71-130 (237)
24 PF06972 DUF1296: Protein of u 36.1 49 0.0011 21.1 2.7 25 239-263 19-44 (60)
25 PF14014 DUF4230: Protein of u 31.7 2.3E+02 0.005 21.5 6.9 40 211-250 75-114 (157)
26 PF04077 DsrH: DsrH like prote 27.9 13 0.00028 25.9 -1.0 25 225-249 19-43 (88)
27 TIGR00722 ttdA_fumA_fumB hydro 25.8 2.3E+02 0.005 24.4 6.0 69 72-145 184-255 (273)
28 cd08324 CARD_NOD1_CARD4 Caspas 25.0 81 0.0018 21.7 2.5 37 233-269 22-59 (85)
29 PF01436 NHL: NHL repeat; Int 23.4 1.2E+02 0.0027 15.6 3.9 19 135-153 10-28 (28)
30 PRK06246 fumarate hydratase; P 23.3 2.7E+02 0.0059 24.0 6.0 40 106-145 222-262 (280)
31 TIGR03735 PRTRC_A PRTRC system 23.1 50 0.0011 26.7 1.4 47 222-268 23-90 (192)
32 PRK05457 heat shock protein Ht 20.5 1.3E+02 0.0028 25.9 3.6 36 214-250 105-140 (284)
33 cd08325 CARD_CASP1-like Caspas 20.5 2.4E+02 0.0051 19.2 4.3 33 238-270 30-62 (83)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=2.1e-48 Score=341.79 Aligned_cols=246 Identities=35% Similarity=0.556 Sum_probs=209.6
Q ss_pred cceEEEEEeecCCCCCCCCceEEEeeecc--------CCCceEEEEEEeCCCCchHHHHHHHHHHHHHHcCCCCCCCHHH
Q 023418 31 KHVTHGYHLVKGKAGHPMEDYVVAQFKQV--------DENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQDPES 102 (282)
Q Consensus 31 ~~~~~~~~s~~G~r~~~neD~~~~~~~~~--------~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~l~~~~~~~~~~~~ 102 (282)
+.+.++..|++|.|+ .|||++++..+.. ......+|+|||||||..+++++++.+...+.+...+...+.+
T Consensus 63 ~~~~~~~~s~~G~R~-~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~ 141 (365)
T PLN03145 63 PVVRSGAWADIGSRS-SMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEK 141 (365)
T ss_pred CceEEEEEccccCCC-CCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 457899999999877 9999998643211 1234689999999999999999999999999876656556788
Q ss_pred HHHHHHHHHHHHHHHhhcc-cCCCCccEEEEEEEeCCEEEEEEcCCceeEEEeCCeeeeCCCCCCCCc--HHHHHHhCCC
Q 023418 103 AVRRAYCITDTTILEKAVD-LGKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAKQLSVDHEPSS--EREHIEGRGG 179 (282)
Q Consensus 103 ~l~~~~~~~~~~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~r~~~~~~lt~dh~~~~--e~~ri~~~gg 179 (282)
.|.++|..++..+.+.... ....+|||++++++.++.+|++|+||||+|+++++++.+||.||++.+ |++||.+.||
T Consensus 142 al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg 221 (365)
T PLN03145 142 VVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGG 221 (365)
T ss_pred HHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCC
Confidence 8999999999998765432 234589999999999999999999999999999999999999999985 8889999999
Q ss_pred eEecCCCCCCccCCeeecccccCCcCCcC-------CccccceEEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHH---
Q 023418 180 FVSNFPGDVPRVDGQLAVARAFGDKSLKM-------HLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIK--- 249 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~~~ltralG~~~~~~-------~v~~~p~~~~~~l~~~~d~llL~SDGv~d~l~~~ei~~i~~--- 249 (282)
.+.. .+.++.+.+||+||+..++. .+.++|++..+++.++++||||||||||++++++++.+++.
T Consensus 222 ~v~~-----g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l 296 (365)
T PLN03145 222 YVYD-----GYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRL 296 (365)
T ss_pred ceec-----ceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHH
Confidence 8863 36677778999999987652 36789999999999877788999999999999999866553
Q ss_pred -ccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEeC
Q 023418 250 -NIKDARSAARHLTEEALARNSSDDISCVVVKFN 282 (282)
Q Consensus 250 -~~~~~~~~a~~l~~~a~~~~~~DN~Tvivv~~~ 282 (282)
...+|+++|+.|++.|+.+++.||+|+|||+|+
T Consensus 297 ~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~ 330 (365)
T PLN03145 297 QEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQ 330 (365)
T ss_pred hcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEee
Confidence 446899999999999999999999999999985
No 2
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=3.8e-45 Score=322.26 Aligned_cols=249 Identities=32% Similarity=0.537 Sum_probs=202.2
Q ss_pred CCCCCCCCCcc-CCcceEEEEEeecCCCCCCCCceEEEeeeccCCCceEEEEEEeCCCCchHHHHHHHHHHHHHHcCCCC
Q 023418 18 SSPDSGKGKSK-MKKHVTHGYHLVKGKAGHPMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNF 96 (282)
Q Consensus 18 ~~p~~~~~~~~-~~~~~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~l~~~~~~ 96 (282)
+.|..++.+.. ....+.+|+.+++|+|+ .|||++++.. ..+..+|+|||||||.++|.++++.+...+.+....
T Consensus 6 ~~p~~~~~~~~~~~~~~~~g~~s~~G~R~-~nED~~~v~~----~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~ 80 (381)
T PTZ00224 6 PKPVLSKLVDRAGNSIFRCASACVNGYRE-SMEDAHLLYL----TDDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEP 80 (381)
T ss_pred CCCccccccccCCCccEEEEEEeCCCCCC-CCCCeeEecc----CCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcccc
Confidence 44555544443 34679999999999988 8999987532 234579999999999999999999988777543221
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhcccCCCCccEEEEEEEeCCEEEEEEcCCceeEEEeCCeeeeCCCCCCCCc--HHHHH
Q 023418 97 WQDPESAVRRAYCITDTTILEKAVDLGKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAKQLSVDHEPSS--EREHI 174 (282)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~r~~~~~~lt~dh~~~~--e~~ri 174 (282)
.....|++++..+++++..... ..|+|++++++..+.+++++|+||||+|++|+|++.+||+||++.+ |+.||
T Consensus 81 --~~~~~l~~a~~~~d~~i~~~~~---~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI 155 (381)
T PTZ00224 81 --MTDERMEELCLEIDEEWMDSGR---EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRI 155 (381)
T ss_pred --ccHHHHHHHHHHHHHHHHhccc---CCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHH
Confidence 1235689999999999986543 2344444444445689999999999999999999999999999986 78899
Q ss_pred HhCCCeEecCCCCCCccCCeeecccccCCcCCcC---------CccccceEEEEEeCCCCeEEEEEcCCCcC-CCCHHHH
Q 023418 175 EGRGGFVSNFPGDVPRVDGQLAVARAFGDKSLKM---------HLSSEPHVVMETIDDDTEFIILASDGLWK-VMSNQDA 244 (282)
Q Consensus 175 ~~~gg~~~~~~~~~~~~~~~~~ltralG~~~~~~---------~v~~~p~~~~~~l~~~~d~llL~SDGv~d-~l~~~ei 244 (282)
.+.|+.+.. .+.+|.+.+||++|+..+|. .+.++|++..+.+.+ +|+|||||||||+ .++++|+
T Consensus 156 ~~~gg~v~~-----~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~-~D~llLaSDGL~d~~ls~eEi 229 (381)
T PTZ00224 156 EACGGRVVS-----NRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQS-NDFIILACDGVFEGNFSNEEV 229 (381)
T ss_pred HHccCEecc-----ccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCC-CCEEEEECCCcCcCccCHHHH
Confidence 999998762 36778899999999976542 356899999999998 8999999999999 7999999
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHhcCCCCCcEEEEEEeC
Q 023418 245 ADAIKN----IKDARSAARHLTEEALARNSSDDISCVVVKFN 282 (282)
Q Consensus 245 ~~i~~~----~~~~~~~a~~l~~~a~~~~~~DN~Tvivv~~~ 282 (282)
.+++.. ..+++++|+.|++.|+.+|+.||+|||||++.
T Consensus 230 ~~iv~~~l~~~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~ 271 (381)
T PTZ00224 230 VAFVKEQLETCDDLAVVAGRVCDEAIRRGSKDNISCLIVQLK 271 (381)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEee
Confidence 999863 46899999999999999999999999999874
No 3
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=9.5e-46 Score=313.67 Aligned_cols=240 Identities=30% Similarity=0.403 Sum_probs=203.1
Q ss_pred CcceEEEEEeecCCCCCCCCceEEEeeeccCCCceEEEEEEeCCCCchHHHHHHHHHHHHHHcCCC---C-CCC--HHHH
Q 023418 30 KKHVTHGYHLVKGKAGHPMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPN---F-WQD--PESA 103 (282)
Q Consensus 30 ~~~~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~l~~~~~---~-~~~--~~~~ 103 (282)
...+.++..++.|..+..|||++++........ ..+++|||||||++++++|++.++..+.+... . ... ..+.
T Consensus 5 ~~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~ 83 (262)
T COG0631 5 ILSLKVAGLSDVGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEEL 83 (262)
T ss_pred cceeeeeeeccCCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHH
Confidence 356788899999999988999999766433333 67999999999999999999998888876421 1 111 5789
Q ss_pred HHHHHHHHHHHHHHhhc--ccCCCCccEEEEEEEeCCEEEEEEcCCceeEEEeCCeeeeCCCCCCCCcHHHHHHhCCCeE
Q 023418 104 VRRAYCITDTTILEKAV--DLGKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAKQLSVDHEPSSEREHIEGRGGFV 181 (282)
Q Consensus 104 l~~~~~~~~~~l~~~~~--~~~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~r~~~~~~lt~dh~~~~e~~ri~~~gg~~ 181 (282)
|.+.+..+++.+..... ....++|||++++++.+++++++||||||+|++|+++++|||.||++.++ .+..+...
T Consensus 84 l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~---~~~~~~~~ 160 (262)
T COG0631 84 LKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNR---LEQRGIIT 160 (262)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHH---HHHhcCCC
Confidence 99999999999998864 22468999999999999999999999999999999999999999998754 34444444
Q ss_pred ecCCCCCCccCCeeecccccCCcCCcCCccccceEEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHccCCHHHHHHHH
Q 023418 182 SNFPGDVPRVDGQLAVARAFGDKSLKMHLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKNIKDARSAARHL 261 (282)
Q Consensus 182 ~~~~~~~~~~~~~~~ltralG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGv~d~l~~~ei~~i~~~~~~~~~~a~~l 261 (282)
......+|+.+ .+||++|+.. .+.|++....+.+ +++|||||||||+.++++++.++++...+|+++++.|
T Consensus 161 ~~~~~~~~~~~---~ltralG~~~-----~~~p~~~~~~~~~-~d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~l 231 (262)
T COG0631 161 PEEARSHPRRN---ALTRALGDFD-----LLEPDITELELEP-GDFLLLCSDGLWDVVSDDEIVDILKNSETPQEAADKL 231 (262)
T ss_pred HHHHHhCccch---hhhhhcCCCc-----ccceeEEEEEcCC-CCEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHHH
Confidence 43333444444 9999999998 6899999999999 6999999999999999999999999888999999999
Q ss_pred HHHHHhcCCCCCcEEEEEEeC
Q 023418 262 TEEALARNSSDDISCVVVKFN 282 (282)
Q Consensus 262 ~~~a~~~~~~DN~Tvivv~~~ 282 (282)
++.|+++++.||+|+|+|++.
T Consensus 232 i~~a~~~g~~DNiT~ilv~~~ 252 (262)
T COG0631 232 IELALEGGGPDNITVVLVRLN 252 (262)
T ss_pred HHHHHhcCCCCceEEEEEEee
Confidence 999999999999999999863
No 4
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-44 Score=290.00 Aligned_cols=246 Identities=30% Similarity=0.505 Sum_probs=218.0
Q ss_pred CcceEEEEEeecCCCCCCCCceEEEeeecc-CCCceEEEEEEeCCCCchHHHHHHHHHHHHHHcCCCCCC--------CH
Q 023418 30 KKHVTHGYHLVKGKAGHPMEDYVVAQFKQV-DENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQ--------DP 100 (282)
Q Consensus 30 ~~~~~~~~~s~~G~r~~~neD~~~~~~~~~-~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~l~~~~~~~~--------~~ 100 (282)
-+.++||.+|+||||- .+||++.+..... +-.++.+|+|||||.|+++|.+++..+++.+.+...+.. +.
T Consensus 19 GNglryg~SSMQGWR~-eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~ 97 (379)
T KOG0697|consen 19 GNGLRYGVSSMQGWRV-EMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENV 97 (379)
T ss_pred CCceeeeeccccchhh-hhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHH
Confidence 4789999999999999 9999997543322 447899999999999999999999999999988655543 56
Q ss_pred HHHHHHHHHHHHHHHHHhhccc--CCCCccEEEEEEEeCCEEEEEEcCCceeEEEeCCeeeeCCCCCCCCc--HHHHHHh
Q 023418 101 ESAVRRAYCITDTTILEKAVDL--GKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAKQLSVDHEPSS--EREHIEG 176 (282)
Q Consensus 101 ~~~l~~~~~~~~~~l~~~~~~~--~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~r~~~~~~lt~dh~~~~--e~~ri~~ 176 (282)
++.++..|.+.++.++...... ...+|+|.+++++....+|++|+||||+.++|+|+...-|+||.|.. |++||++
T Consensus 98 ~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqn 177 (379)
T KOG0697|consen 98 EKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQN 177 (379)
T ss_pred HhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhc
Confidence 7889999999988877665332 23488888899999999999999999999999999999999999985 9999999
Q ss_pred CCCeEecCCCCCCccCCeeecccccCCcCCcC---------CccccceEEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHH
Q 023418 177 RGGFVSNFPGDVPRVDGQLAVARAFGDKSLKM---------HLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADA 247 (282)
Q Consensus 177 ~gg~~~~~~~~~~~~~~~~~ltralG~~~~~~---------~v~~~p~~~~~~l~~~~d~llL~SDGv~d~l~~~ei~~i 247 (282)
+||.+-. .|.||.++++|++||..||. .|+++|++........++|+||++||+||.++.+|+.++
T Consensus 178 AGGSVMI-----qRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcef 252 (379)
T KOG0697|consen 178 AGGSVMI-----QRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEF 252 (379)
T ss_pred CCCeEEE-----EEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHH
Confidence 9998773 49999999999999999985 499999999999988899999999999999999999999
Q ss_pred HHcc----CCHHHHHHHHHHHHHhcCCCCCcEEEEEEe
Q 023418 248 IKNI----KDARSAARHLTEEALARNSSDDISCVVVKF 281 (282)
Q Consensus 248 ~~~~----~~~~~~a~~l~~~a~~~~~~DN~Tvivv~~ 281 (282)
+++. .+..++|..+++.++-.|++||+|+|++-|
T Consensus 253 v~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcf 290 (379)
T KOG0697|consen 253 VKSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCF 290 (379)
T ss_pred HHhhheecccHHHHHHHHHHHHHhccCccCceEEEEec
Confidence 9874 689999999999999999999999999865
No 5
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=6e-43 Score=305.95 Aligned_cols=249 Identities=46% Similarity=0.688 Sum_probs=214.8
Q ss_pred ceEEE-EEeecCCCCCCCCceEEEeeecc----CCC-ceEEEEEEeCCCCchHHHHHHHHHHHHHHcCCCCCCC---HHH
Q 023418 32 HVTHG-YHLVKGKAGHPMEDYVVAQFKQV----DEN-ELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQD---PES 102 (282)
Q Consensus 32 ~~~~~-~~s~~G~r~~~neD~~~~~~~~~----~~~-~~~l~~V~DG~GG~~~a~~~~~~~~~~l~~~~~~~~~---~~~ 102 (282)
.+.++ ..+.+|+|+ .+||++....... ... ...+|||||||||..+|+++.+.++..+.+...+... ...
T Consensus 38 ~~~~~~~~~~~~~r~-~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~ 116 (330)
T KOG0698|consen 38 SYRLGSLLSIRGRRR-KMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKD 116 (330)
T ss_pred cccceEEEecCCCCC-ccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Confidence 34444 457888888 8999998654422 233 5899999999999999999999999999988776664 789
Q ss_pred HHHHHHH-HHHHHHHHhhcccCCCCccEEEEEEEeCCEEEEEEcCCceeEEEeCC-eeeeCCCCCCCC--cHHHHHHhCC
Q 023418 103 AVRRAYC-ITDTTILEKAVDLGKGGSTAVTAILINCEKLVVANVGDSRAVICKNG-VAKQLSVDHEPS--SEREHIEGRG 178 (282)
Q Consensus 103 ~l~~~~~-~~~~~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~r~~-~~~~lt~dh~~~--~e~~ri~~~g 178 (282)
+++++|. ..+..+..........|+|++++++.++.++|++|+||||+++.+.+ ...+||.||.+. .|+.||..+|
T Consensus 117 a~~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~G 196 (330)
T KOG0698|consen 117 ALRRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAG 196 (330)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcC
Confidence 9999999 69999987622223556666666666566999999999999999866 899999999996 5999999999
Q ss_pred CeEecCCCCCCccCCeeecccccCCcCCc-CCccccceEEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHc----cCC
Q 023418 179 GFVSNFPGDVPRVDGQLAVARAFGDKSLK-MHLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKN----IKD 253 (282)
Q Consensus 179 g~~~~~~~~~~~~~~~~~ltralG~~~~~-~~v~~~p~~~~~~l~~~~d~llL~SDGv~d~l~~~ei~~i~~~----~~~ 253 (282)
|++....+ .+|++|.++++|++||..+| ..+.++|++....+...++||||+||||||.++++|+.++++. ..+
T Consensus 197 G~v~~~~~-~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~ 275 (330)
T KOG0698|consen 197 GRVSNWGG-VWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISS 275 (330)
T ss_pred CEEEEcCC-cceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhcccc
Confidence 99996554 57999999999999999999 8899999999999999899999999999999999999999998 568
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEEeC
Q 023418 254 ARSAARHLTEEALARNSSDDISCVVVKFN 282 (282)
Q Consensus 254 ~~~~a~~l~~~a~~~~~~DN~Tvivv~~~ 282 (282)
+..++..|.+.|..+++.||+|||||.|+
T Consensus 276 ~~~a~~~l~~~a~~~~s~DnitvvvV~l~ 304 (330)
T KOG0698|consen 276 PLAAAKLLATEALSRGSKDNITVVVVRLK 304 (330)
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEEEEec
Confidence 99999999999999999999999999984
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=5.9e-44 Score=303.30 Aligned_cols=236 Identities=39% Similarity=0.596 Sum_probs=195.9
Q ss_pred EEEEEeecCCCCCCCCceEEEeeecc---CCCceEEEEEEeCCCCchHHHHHHHHHHHHHHcCCCCCC--CHHHHHHHHH
Q 023418 34 THGYHLVKGKAGHPMEDYVVAQFKQV---DENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQ--DPESAVRRAY 108 (282)
Q Consensus 34 ~~~~~s~~G~r~~~neD~~~~~~~~~---~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~l~~~~~~~~--~~~~~l~~~~ 108 (282)
.+|+.+.+|+|. .|||++++..+.. ...+..+|+|||||||..++.+++..+...+.+...... .+...|..+|
T Consensus 1 ~~~~~~~~g~r~-~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~ 79 (254)
T PF00481_consen 1 DYGVSSMQGVRK-EMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAF 79 (254)
T ss_dssp EEEEEEEECTSS-SHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCeecCCCCCC-cccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhccccee
Confidence 478999999999 9999999766442 457889999999999999999999999977765433222 4788999999
Q ss_pred HH-HHHHHHHhhcc-cCCCCccEEEEEEEeCCEEEEEEcCCceeEEEeCCeee-eCCCCCCCCc--HHHHHHhCCCeEec
Q 023418 109 CI-TDTTILEKAVD-LGKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAK-QLSVDHEPSS--EREHIEGRGGFVSN 183 (282)
Q Consensus 109 ~~-~~~~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~r~~~~~-~lt~dh~~~~--e~~ri~~~gg~~~~ 183 (282)
.. ++..+...... ....+|||++++++..+++|++|+||||+|+++++... +||.||++.+ |+.||++.||.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~ 159 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSE 159 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEE
T ss_pred eecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeecccccccc
Confidence 99 88888763322 33568888889999999999999999999999999888 9999999985 99999999999985
Q ss_pred CCCCCCccCCeeecccccCCcCCcC----CccccceEEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHccCC----HH
Q 023418 184 FPGDVPRVDGQLAVARAFGDKSLKM----HLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKNIKD----AR 255 (282)
Q Consensus 184 ~~~~~~~~~~~~~ltralG~~~~~~----~v~~~p~~~~~~l~~~~d~llL~SDGv~d~l~~~ei~~i~~~~~~----~~ 255 (282)
..+.++.+.+||+||+..+++ .|.++|++..+++.++++|||||||||||.++++|+.+++.+..+ |+
T Consensus 160 ----~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~ 235 (254)
T PF00481_consen 160 ----NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQ 235 (254)
T ss_dssp ----TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHH
T ss_pred ----chhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHH
Confidence 458888899999999999998 899999999999999656999999999999999999999988654 99
Q ss_pred HHHHHHHHHHHhcCCCCCc
Q 023418 256 SAARHLTEEALARNSSDDI 274 (282)
Q Consensus 256 ~~a~~l~~~a~~~~~~DN~ 274 (282)
.+|+.|++.|+++|+.|||
T Consensus 236 ~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 236 EAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp HHHHHHHHHHHHTTHHSHE
T ss_pred HHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999996
No 7
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=5.1e-40 Score=278.83 Aligned_cols=240 Identities=45% Similarity=0.640 Sum_probs=205.0
Q ss_pred EEEEEeecCCCCCCCCceEEEeeeccCCCceEEEEEEeCCCCchHHHHHHHHHHHHHHcCCCC-----CCCHHHHHHHHH
Q 023418 34 THGYHLVKGKAGHPMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNF-----WQDPESAVRRAY 108 (282)
Q Consensus 34 ~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~l~~~~~~-----~~~~~~~l~~~~ 108 (282)
.+++.+..|.|. .|||++++...... .+..+|+|||||||+..++.+++.+...+.+.... ...+...|.++|
T Consensus 2 ~~~~~~~~g~r~-~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 79 (254)
T cd00143 2 SAGVSDKGGDRK-TNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAF 79 (254)
T ss_pred ceeeecCCCCCC-CCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 567788888888 99999987543111 26799999999999999999999998888764322 345678899999
Q ss_pred HHHHHHHHHhhcc--cCCCCccEEEEEEEeCCEEEEEEcCCceeEEEeCCeeeeCCCCCCCCc--HHHHHHhCCCeEecC
Q 023418 109 CITDTTILEKAVD--LGKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAKQLSVDHEPSS--EREHIEGRGGFVSNF 184 (282)
Q Consensus 109 ~~~~~~l~~~~~~--~~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~r~~~~~~lt~dh~~~~--e~~ri~~~gg~~~~~ 184 (282)
+.+++.+...... ....++||++++++..+.++++|+||||+|+++++++.++|.||++.+ +..++...+++..
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~-- 157 (254)
T cd00143 80 LRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVS-- 157 (254)
T ss_pred HHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEE--
Confidence 9999999887643 235688999999999999999999999999999999999999999984 7788888887654
Q ss_pred CCCCCccCCeeecccccCCcCCcCCccccceEEEEEe-CCCCeEEEEEcCCCcCCCCHHHHHHHHHccC---CHHHHHHH
Q 023418 185 PGDVPRVDGQLAVARAFGDKSLKMHLSSEPHVVMETI-DDDTEFIILASDGLWKVMSNQDAADAIKNIK---DARSAARH 260 (282)
Q Consensus 185 ~~~~~~~~~~~~ltralG~~~~~~~v~~~p~~~~~~l-~~~~d~llL~SDGv~d~l~~~ei~~i~~~~~---~~~~~a~~ 260 (282)
....++.+.+|+++|...+++.+..+|++...++ ++ +++|+|||||||++++++++.+++.... +++++|+.
T Consensus 158 ---~~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~-~d~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~ 233 (254)
T cd00143 158 ---NGRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTED-DDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQE 233 (254)
T ss_pred ---eCEEcCceeeccccCCccccCCEEcCCeEEEEEeCCC-CcEEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHH
Confidence 2345566799999999988777789999999999 66 9999999999999999999999999877 89999999
Q ss_pred HHHHHHhcCCCCCcEEEEEEe
Q 023418 261 LTEEALARNSSDDISCVVVKF 281 (282)
Q Consensus 261 l~~~a~~~~~~DN~Tvivv~~ 281 (282)
|++.|.++++.||+|+|++++
T Consensus 234 l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 234 LVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred HHHHHHhCCCCCCEEEEEEeC
Confidence 999999999999999999975
No 8
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=4.8e-40 Score=304.92 Aligned_cols=241 Identities=20% Similarity=0.265 Sum_probs=184.4
Q ss_pred cceEEEEEeecCCCCCCCCceEEEeeec----cC-C---CceEEEEEEeCCCCchHHHHHHHHHHHHHHc----CCCCCC
Q 023418 31 KHVTHGYHLVKGKAGHPMEDYVVAQFKQ----VD-E---NELGLFAIFDGHLSHEIPDFLRTHLFENILN----EPNFWQ 98 (282)
Q Consensus 31 ~~~~~~~~s~~G~r~~~neD~~~~~~~~----~~-~---~~~~l~~V~DG~GG~~~a~~~~~~~~~~l~~----~~~~~~ 98 (282)
..+.++..|++|.+|+.|||++.+.... .+ + ....+|+|||||||+..++.|++.+++.+.+ ......
T Consensus 373 ~~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~ 452 (645)
T PRK14559 373 VSLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDEL 452 (645)
T ss_pred eeEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3588899999998776999998753211 01 1 1357899999999998777766665555432 111111
Q ss_pred CHHHHHHHHHHHHHHHHHHhhccc----CCCCccEEEEEEEeCCEEEEEEcCCceeEEE-eCCeeeeCCCCCCCCcHHHH
Q 023418 99 DPESAVRRAYCITDTTILEKAVDL----GKGGSTAVTAILINCEKLVVANVGDSRAVIC-KNGVAKQLSVDHEPSSEREH 173 (282)
Q Consensus 99 ~~~~~l~~~~~~~~~~l~~~~~~~----~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~-r~~~~~~lt~dh~~~~e~~r 173 (282)
.....+++++..+|..|.+..... ...+|||++++++.++++|++||||||+|++ |+|++.+||.||++.++
T Consensus 453 ~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~--- 529 (645)
T PRK14559 453 PDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQR--- 529 (645)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHH---
Confidence 245679999999999998765322 2468999999999999999999999999998 57899999999987643
Q ss_pred HHhCCCeEecCCCCCCccCCeeecccccCCcCCcCCccccceEEEEEeCCCCeEEEEEcCCCcCC--CCH---HHHHHHH
Q 023418 174 IEGRGGFVSNFPGDVPRVDGQLAVARAFGDKSLKMHLSSEPHVVMETIDDDTEFIILASDGLWKV--MSN---QDAADAI 248 (282)
Q Consensus 174 i~~~gg~~~~~~~~~~~~~~~~~ltralG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGv~d~--l~~---~ei~~i~ 248 (282)
+.+.| ... .....+++.+.+||++|....+ ..+|++..+.+.+ +++||||||||||+ +.. +++..++
T Consensus 530 lv~~G-i~~---~~a~~~p~~~~LTrALG~~~~~---~l~Pdi~~~~L~~-gD~lLLCSDGL~D~~~ve~~~~~~l~~il 601 (645)
T PRK14559 530 EIQRG-VEP---QIAYARPDAYQLTQALGPRDNS---AIQPDIQFLEIEE-DTLLLLCSDGLSDNDLLETHWQTHLLPLL 601 (645)
T ss_pred HHHhC-CCH---HHHhcCcccceeeeccCCCCCC---cccceEEEEEcCC-CCEEEEECCCCCCCcccchHHHHHHHHHH
Confidence 45555 221 1222334567999999986533 4689999999998 89999999999994 454 4556777
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEeC
Q 023418 249 KNIKDARSAARHLTEEALARNSSDDISCVVVKFN 282 (282)
Q Consensus 249 ~~~~~~~~~a~~l~~~a~~~~~~DN~Tvivv~~~ 282 (282)
....++.++++.|++.|+.+|+.||+|+|||+++
T Consensus 602 ~~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~ 635 (645)
T PRK14559 602 SSSANLDQGLNKLIDLANQYNGHDNITAILVRLK 635 (645)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEec
Confidence 7777999999999999999999999999999874
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=4.5e-39 Score=273.45 Aligned_cols=240 Identities=44% Similarity=0.645 Sum_probs=206.0
Q ss_pred cceEEEEEeecCCCCCCCCceEEEeeeccCCCceEEEEEEeCCCCchHHHHHHHHHHHHHHcCCCCC----CCHHHHHHH
Q 023418 31 KHVTHGYHLVKGKAGHPMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFW----QDPESAVRR 106 (282)
Q Consensus 31 ~~~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~l~~~~~~~----~~~~~~l~~ 106 (282)
..+.+++.+.+|.|. .|||++++... ...+..+++|||||||..++.++++.+...+.+..... ..+...|.+
T Consensus 4 ~~~~~~~~~~~~~r~-~neD~~~~~~~--~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (255)
T smart00332 4 LGLRYGLSSMQGVRK-PMEDAHVITPD--LSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRK 80 (255)
T ss_pred CceeEEEecCCCCCC-CCcceEEEecc--CCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHH
Confidence 346778877777777 99999986532 12567899999999999999999999998887654333 247788999
Q ss_pred HHHHHHHHHHHhhccc--CCCCccEEEEEEEeCCEEEEEEcCCceeEEEeCCeeeeCCCCCCCCc--HHHHHHhCCCeEe
Q 023418 107 AYCITDTTILEKAVDL--GKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAKQLSVDHEPSS--EREHIEGRGGFVS 182 (282)
Q Consensus 107 ~~~~~~~~l~~~~~~~--~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~r~~~~~~lt~dh~~~~--e~~ri~~~gg~~~ 182 (282)
++..+++.+....... ...++||++++++..+.++++|+||||+|++|++++.++|.||++.+ +..++...++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~ 160 (255)
T smart00332 81 AFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVI 160 (255)
T ss_pred HHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEE
Confidence 9999999998876543 24689999999999999999999999999999999999999999974 7788888888766
Q ss_pred cCCCCCCccCCeeecccccCCcCCcCCccccceEEEEEe-CCCCeEEEEEcCCCcCCCCHHHHHHHHHccC---CHHHHH
Q 023418 183 NFPGDVPRVDGQLAVARAFGDKSLKMHLSSEPHVVMETI-DDDTEFIILASDGLWKVMSNQDAADAIKNIK---DARSAA 258 (282)
Q Consensus 183 ~~~~~~~~~~~~~~ltralG~~~~~~~v~~~p~~~~~~l-~~~~d~llL~SDGv~d~l~~~ei~~i~~~~~---~~~~~a 258 (282)
. .+.++.+.+||++|...+++.+.++|++...++ .+ +++|||||||||++++++++.+++.... ++.++|
T Consensus 161 ~-----~~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~-~d~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~ 234 (255)
T smart00332 161 N-----GRVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEK-DDFLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAA 234 (255)
T ss_pred C-----CeECCeEecccccCCHhhcCCeEeeeEEEEEEecCC-CcEEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 3 255666799999999998888899999999997 66 9999999999999999999999998865 699999
Q ss_pred HHHHHHHHhcCCCCCcEEEEE
Q 023418 259 RHLTEEALARNSSDDISCVVV 279 (282)
Q Consensus 259 ~~l~~~a~~~~~~DN~Tvivv 279 (282)
+.|++.|.+++..||+|+||+
T Consensus 235 ~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 235 KRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred HHHHHHHHHcCCCCCeEEEEC
Confidence 999999999999999999985
No 10
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=6.5e-37 Score=256.77 Aligned_cols=156 Identities=34% Similarity=0.644 Sum_probs=141.0
Q ss_pred CCCCccEEEEEEEeCCEEEEEEcCCceeEEEeCCeeeeCCCCCCCCc--HHHHHHhCCCeEecCCCCCCccCCeeecccc
Q 023418 123 GKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAKQLSVDHEPSS--EREHIEGRGGFVSNFPGDVPRVDGQLAVARA 200 (282)
Q Consensus 123 ~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~r~~~~~~lt~dh~~~~--e~~ri~~~gg~~~~~~~~~~~~~~~~~ltra 200 (282)
+..+|||.+++++.+++++++|.||||+++.|.|+..-+|.||.|.. |..||..+||.++- .+|+||.+.|+|+
T Consensus 327 G~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtl----DGRVNGGLNLSRA 402 (542)
T KOG0699|consen 327 GEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTL----DGRVNGGLNLSRA 402 (542)
T ss_pred CCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEee----cceecCccchhhh
Confidence 44568999999999999999999999999999999999999999985 88899999999982 4699999999999
Q ss_pred cCCcCCcCC---------ccccceEEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHc----cCCHHHHHHHHHHHHHh
Q 023418 201 FGDKSLKMH---------LSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKN----IKDARSAARHLTEEALA 267 (282)
Q Consensus 201 lG~~~~~~~---------v~~~p~~~~~~l~~~~d~llL~SDGv~d~l~~~ei~~i~~~----~~~~~~~a~~l~~~a~~ 267 (282)
+|+..||.. |++-|+++...|.+.++|+|+++||||++|+.++++++++. ......+|+.|++.+++
T Consensus 403 ~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLA 482 (542)
T KOG0699|consen 403 FGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLA 482 (542)
T ss_pred hhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence 999999973 78999999999999999999999999999999999998865 35778899999999988
Q ss_pred cC------CCCCcEEEEEEeC
Q 023418 268 RN------SSDDISCVVVKFN 282 (282)
Q Consensus 268 ~~------~~DN~Tvivv~~~ 282 (282)
-. ..||+|+|++.|+
T Consensus 483 p~T~GDGTGCDNMT~ii~~Fk 503 (542)
T KOG0699|consen 483 PSTDGDGTGCDNMTVIITTFK 503 (542)
T ss_pred CCCCCCCcCCCcceEEEEEec
Confidence 42 4799999999875
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-31 Score=228.97 Aligned_cols=209 Identities=36% Similarity=0.475 Sum_probs=166.9
Q ss_pred CCceEEEEEEeCCCCchHHHHHHHHHHHHHHcC-------------CC---------------------CCCCHHHHHHH
Q 023418 61 ENELGLFAIFDGHLSHEIPDFLRTHLFENILNE-------------PN---------------------FWQDPESAVRR 106 (282)
Q Consensus 61 ~~~~~l~~V~DG~GG~~~a~~~~~~~~~~l~~~-------------~~---------------------~~~~~~~~l~~ 106 (282)
..++.++||||||||.++++++++.++.++..+ .. ......++|.+
T Consensus 96 ~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~ 175 (390)
T KOG0700|consen 96 ENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSK 175 (390)
T ss_pred cCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHH
Confidence 577899999999999999999999999887711 00 13456789999
Q ss_pred HHHHHHHHHHHhhccc------CCCCccEEEEEEEeCCEEEEEEcCCceeEEEe---CC---eeeeCCCCCCCCc--HHH
Q 023418 107 AYCITDTTILEKAVDL------GKGGSTAVTAILINCEKLVVANVGDSRAVICK---NG---VAKQLSVDHEPSS--ERE 172 (282)
Q Consensus 107 ~~~~~~~~l~~~~~~~------~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~r---~~---~~~~lt~dh~~~~--e~~ 172 (282)
||.+.++.+....... ...+|+++++.++.+..+|++|+||||+++-+ ++ ...|||.||+..+ |++
T Consensus 176 Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~ 255 (390)
T KOG0700|consen 176 AFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVR 255 (390)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHH
Confidence 9999999997655322 12445566666788999999999999999854 33 5689999999985 888
Q ss_pred HHHhCCCeEec-CCCCCCccCCeeecccccCCcCCcC---------------------CccccceEEEEEeCCCCeEEEE
Q 023418 173 HIEGRGGFVSN-FPGDVPRVDGQLAVARAFGDKSLKM---------------------HLSSEPHVVMETIDDDTEFIIL 230 (282)
Q Consensus 173 ri~~~gg~~~~-~~~~~~~~~~~~~ltralG~~~~~~---------------------~v~~~p~~~~~~l~~~~d~llL 230 (282)
||+....-... .-..+.|+.|.+.+|||+|+..+|. +++++|++..++|.+.+.||||
T Consensus 256 Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIl 335 (390)
T KOG0700|consen 256 RIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLIL 335 (390)
T ss_pred HHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEE
Confidence 88876431110 0122358889999999999999884 4899999999999999999999
Q ss_pred EcCCCcCCCCHHHHHHHHHcc----CCHHHHHHHHHHHHHhcC
Q 023418 231 ASDGLWKVMSNQDAADAIKNI----KDARSAARHLTEEALARN 269 (282)
Q Consensus 231 ~SDGv~d~l~~~ei~~i~~~~----~~~~~~a~~l~~~a~~~~ 269 (282)
+|||+|++|+++|+++++.++ ..-+.+|+.|++.|+.+.
T Consensus 336 ASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 336 ASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred eccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 999999999999999999884 234678999999998754
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.95 E-value=3.5e-26 Score=190.48 Aligned_cols=222 Identities=29% Similarity=0.441 Sum_probs=170.7
Q ss_pred CCCceEEEEEEeCCCCchHHHHHHHHHHHHHHcCC-------------------------CCC---------------CC
Q 023418 60 DENELGLFAIFDGHLSHEIPDFLRTHLFENILNEP-------------------------NFW---------------QD 99 (282)
Q Consensus 60 ~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~l~~~~-------------------------~~~---------------~~ 99 (282)
+..+..+|.+||||.|..+|-.|++.+...+.+.. .+. .-
T Consensus 140 ~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~L 219 (493)
T KOG1323|consen 140 PRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHL 219 (493)
T ss_pred CCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHh
Confidence 45677999999999999999999887776664320 000 01
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCccEEEEEEEeCCEEEEEEcCCceeEEEeCCeeeeCCCCCCCCcHHHHHHhCCC
Q 023418 100 PESAVRRAYCITDTTILEKAVDLGKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAKQLSVDHEPSSEREHIEGRGG 179 (282)
Q Consensus 100 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~r~~~~~~lt~dh~~~~e~~ri~~~gg 179 (282)
...+|..||+++++.|..........||||+++++.--+++|++|.||||++++|++++++||++.++..|++|++..+-
T Consensus 220 ViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~Laf 299 (493)
T KOG1323|consen 220 VIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQELAF 299 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHHhh
Confidence 35678999999999998877666566777776667669999999999999999999999999999999999999988753
Q ss_pred eEecC--------------------------------------------------CCCCCccCCeeecccccCCcCCcC-
Q 023418 180 FVSNF--------------------------------------------------PGDVPRVDGQLAVARAFGDKSLKM- 208 (282)
Q Consensus 180 ~~~~~--------------------------------------------------~~~~~~~~~~~~ltralG~~~~~~- 208 (282)
...+. .+...+.-+...+||.+||..++.
T Consensus 300 ~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~ 379 (493)
T KOG1323|consen 300 RNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVV 379 (493)
T ss_pred cChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeee
Confidence 22221 011123334578999999987663
Q ss_pred --------CccccceEEEEEeCC----CCeEEEEEcCCCcCCCCHHHHHHHHHcc------CCH---HHHHHHHHHHHHh
Q 023418 209 --------HLSSEPHVVMETIDD----DTEFIILASDGLWKVMSNQDAADAIKNI------KDA---RSAARHLTEEALA 267 (282)
Q Consensus 209 --------~v~~~p~~~~~~l~~----~~d~llL~SDGv~d~l~~~ei~~i~~~~------~~~---~~~a~~l~~~a~~ 267 (282)
.+++.|+++...|.+ .+|.+||+|||+||.++++|+..++++. .+| ..+|+.|+..|-.
T Consensus 380 dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg 459 (493)
T KOG1323|consen 380 DSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARG 459 (493)
T ss_pred cCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcC
Confidence 478889999988874 3789999999999999999999999874 233 3567888877743
Q ss_pred -------------cCCCCCcEEEEEEe
Q 023418 268 -------------RNSSDDISCVVVKF 281 (282)
Q Consensus 268 -------------~~~~DN~Tvivv~~ 281 (282)
.|+.|||||.||-+
T Consensus 460 ~~k~rgWr~~n~~lgSgDDIsVfVIPL 486 (493)
T KOG1323|consen 460 QQKDRGWRMNNGGLGSGDDISVFVIPL 486 (493)
T ss_pred ccCCCceeccCCCcCCCCceEEEEEec
Confidence 24689999999876
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=7.4e-25 Score=182.33 Aligned_cols=202 Identities=20% Similarity=0.222 Sum_probs=141.0
Q ss_pred CCCceEEEeeeccCCCceEEEEEEeCCCCc--------hHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 023418 47 PMEDYVVAQFKQVDENELGLFAIFDGHLSH--------EIPDFLRTHLFENILNEPNFWQDPESAVRRAYCITDTTILEK 118 (282)
Q Consensus 47 ~neD~~~~~~~~~~~~~~~l~~V~DG~GG~--------~~a~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 118 (282)
.-||++++..+ ....+.|||||+||| ..+..+.+.+.+.+.+....+.++...|.+++.++-+ .
T Consensus 90 ~GEDa~Fvss~----~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~----~ 161 (330)
T KOG1379|consen 90 GGEDAWFVSSN----PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKS----Q 161 (330)
T ss_pred CCCcceeeccC----cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhh----c
Confidence 57999997432 566899999999999 3344444444555555555566888888888766432 1
Q ss_pred hcccCCCCccEEEEEEEe--CCEEEEEEcCCceeEEEeCCeeeeCCCCCCCCcHHHHHHhCCCeEecCCCCCCccCCeee
Q 023418 119 AVDLGKGGSTAVTAILIN--CEKLVVANVGDSRAVICKNGVAKQLSVDHEPSSEREHIEGRGGFVSNFPGDVPRVDGQLA 196 (282)
Q Consensus 119 ~~~~~~~~~tt~~~~~~~--~~~~~~~~vGDsr~~~~r~~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~ 196 (282)
+.. .-|++|++++.++ ++++|++|+|||...++|+|++..-|..+... .+....+...|.+
T Consensus 162 -~~~-~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~------FN~PyQLs~~p~~--------- 224 (330)
T KOG1379|consen 162 -KVP-IVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHY------FNTPYQLSSPPEG--------- 224 (330)
T ss_pred -CCC-CCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheec------cCCceeeccCCcc---------
Confidence 111 2244554445554 88999999999999999999999888866432 1111111111110
Q ss_pred cccccCCcCCcCCccccceEEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHcc-----CCHHHHHHHHHHHHHhc---
Q 023418 197 VARAFGDKSLKMHLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKNI-----KDARSAARHLTEEALAR--- 268 (282)
Q Consensus 197 ltralG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGv~d~l~~~ei~~i~~~~-----~~~~~~a~~l~~~a~~~--- 268 (282)
...++++.. -..+...+.+++ ||+|||+|||+||++.+++|.+++... .+++..|+.|.+.|.+.
T Consensus 225 ~~~~~~d~p------~~ad~~~~~v~~-GDvIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d 297 (330)
T KOG1379|consen 225 YSSYISDVP------DSADVTSFDVQK-GDVIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRD 297 (330)
T ss_pred ccccccCCc------cccceEEEeccC-CCEEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccC
Confidence 122334332 456788999999 999999999999999999999999653 57899999999998542
Q ss_pred --------------------CCCCCcEEEEEE
Q 023418 269 --------------------NSSDDISCVVVK 280 (282)
Q Consensus 269 --------------------~~~DN~Tvivv~ 280 (282)
|+.||||+||..
T Consensus 298 ~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 298 PKFQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred cCcCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 569999999975
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=1e-24 Score=203.20 Aligned_cols=265 Identities=22% Similarity=0.337 Sum_probs=216.6
Q ss_pred hHHHHHHhhcCCCCCCCCCCccCCcceEEEEEeecCCCCCCCCceEEEeeeccCCCceEEEEEEeCCCCchHHHHHHHHH
Q 023418 7 IFNKMKEKVLGSSPDSGKGKSKMKKHVTHGYHLVKGKAGHPMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHL 86 (282)
Q Consensus 7 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~ 86 (282)
.+..+...+...++ ....+-...-++||++...|+|. .+--+.....++ -.+....||++||-+..+..+.....+
T Consensus 498 ~l~~l~~~~i~~~~--~~d~~~n~~~~t~Gv~~~~gqrn-k~c~~~~~v~nf-~~~~~a~~g~~dgs~n~~v~~~vq~~m 573 (1081)
T KOG0618|consen 498 VLKSLSQMDITLNN--TPDGNVNAFLWTYGVAGVSGQRN-KVCSRAVWVENF-FLNPQATFGCFDGSRNSRVLSLVQDTM 573 (1081)
T ss_pred HhhhhhheecccCC--CCccccceeheeeccchhccccc-chhhhhhhhhhc-ccCCcceEEEEcCCCchhHHHHHHHHH
Confidence 44555555555552 22333334567899999999999 444443322222 235568999999999999999999999
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHhhcccCCCCccEEEEEEEeC-------CEEEEEEcCCceeEEEeCCeee
Q 023418 87 FENILNEPNFWQDPESAVRRAYCITDTTILEKAVDLGKGGSTAVTAILINC-------EKLVVANVGDSRAVICKNGVAK 159 (282)
Q Consensus 87 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~~~~-------~~~~~~~vGDsr~~~~r~~~~~ 159 (282)
...+.++.....+-...|+.+|...++++...+... +++.+.+-+..+ .+++.||+|+|++.+.++|+..
T Consensus 574 a~~L~eev~~~~~et~~mr~~fl~~~rklg~~g~~l---g~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~ 650 (1081)
T KOG0618|consen 574 ASYLAEEVQLYGNETEQMRNTFLRLNRKLGEEGQVL---GGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPL 650 (1081)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHhhhhhhhhccc---cchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcC
Confidence 999988776666666779999999999997666544 555555544432 3689999999999999999988
Q ss_pred eCCCCCCCC---cHHHHHHhCCCeEecCCCCCCccCCeeecccccCCcCCcCCccccceEEEEEeCCCCeEEEEEcCCCc
Q 023418 160 QLSVDHEPS---SEREHIEGRGGFVSNFPGDVPRVDGQLAVARAFGDKSLKMHLSSEPHVVMETIDDDTEFIILASDGLW 236 (282)
Q Consensus 160 ~lt~dh~~~---~e~~ri~~~gg~~~~~~~~~~~~~~~~~ltralG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGv~ 236 (282)
++|+-.... +|.+|++..+|++.+ .++.+|....||++|.....|+|.+.|++....|.+.+++||+++-++|
T Consensus 651 p~t~~~~~~v~~eE~~RI~~~~g~i~e----d~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW 726 (1081)
T KOG0618|consen 651 PTTRSPMLEVDREEYKRIVDSKGFITE----DNKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLW 726 (1081)
T ss_pred cccccccccCCHHHHHHHHHhcCeecC----CCeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHh
Confidence 888765333 499999999999994 4588999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEeC
Q 023418 237 KVMSNQDAADAIKNIKDARSAARHLTEEALARNSSDDISCVVVKFN 282 (282)
Q Consensus 237 d~l~~~ei~~i~~~~~~~~~~a~~l~~~a~~~~~~DN~Tvivv~~~ 282 (282)
++|+.+++.+.+++..+|-.+|++|++.|+++|+.||++|+||+++
T Consensus 727 ~~Lsid~a~~~vRn~~dpL~AAkKL~d~AqSYgc~~nv~vlVv~l~ 772 (1081)
T KOG0618|consen 727 SVLSIDTAVDAVRNVEDPLLAAKKLCDLAQSYGCAENVSVLVVRLN 772 (1081)
T ss_pred hhccHHHHHHHHhcCCchHHHHHHHHHHHHhcccccCeeEEEEEee
Confidence 9999999999999989999999999999999999999999999874
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.87 E-value=1.8e-21 Score=160.93 Aligned_cols=179 Identities=19% Similarity=0.252 Sum_probs=96.5
Q ss_pred EeecCCCCCCCCceEEEeeeccCCCceEEEEEEeCCCCchHHHH----HHHHHHHHHHcCCCCCCC--HHHHHHHHHHHH
Q 023418 38 HLVKGKAGHPMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDF----LRTHLFENILNEPNFWQD--PESAVRRAYCIT 111 (282)
Q Consensus 38 ~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~----~~~~~~~~l~~~~~~~~~--~~~~l~~~~~~~ 111 (282)
.+++|.+. .|||++.+... .+..+++|+||+|+...+.. +++.+...+.+....... ....++.+...+
T Consensus 3 ~sh~~~~~-~nqD~~~~~~~----~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 77 (212)
T PF13672_consen 3 RSHRGRGA-PNQDAFGIRTD----DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEI 77 (212)
T ss_dssp ----TTSS-S--EEEEEE-T----CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCC-CCCCCEEeeeC----CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 36788888 99999984332 33456699999998855444 555555555544332211 122223222232
Q ss_pred HHHH-----HHhhcccCCCCccEEEEEEEeCCEEEEEEcCCceeEE-EeCCeeeeCCCCCCCCcHHHHHHhCCCeEecCC
Q 023418 112 DTTI-----LEKAVDLGKGGSTAVTAILINCEKLVVANVGDSRAVI-CKNGVAKQLSVDHEPSSEREHIEGRGGFVSNFP 185 (282)
Q Consensus 112 ~~~l-----~~~~~~~~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~-~r~~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~ 185 (282)
...+ ...........+||++++++.++.++++|+||||+|+ .+++++.+++.+|+. +. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~--~~---~~--------- 143 (212)
T PF13672_consen 78 LSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSG--EY---PN--------- 143 (212)
T ss_dssp HHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BH--HH---HH---------
T ss_pred HHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccc--hh---hh---------
Confidence 2221 1111233467899999999999999999999999965 689999999999951 11 00
Q ss_pred CCCCccCCeeecccccCCcCCcCCccccceEEEEEeCCCCeEEEEEcCCCcCCCCHHH-HHHHHHcc
Q 023418 186 GDVPRVDGQLAVARAFGDKSLKMHLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQD-AADAIKNI 251 (282)
Q Consensus 186 ~~~~~~~~~~~ltralG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGv~d~l~~~e-i~~i~~~~ 251 (282)
. +..+.... .....++..+++.+ ++.|+|||||||+.+...+ +..++.+.
T Consensus 144 ----------~-~~~~~~~~----~~~~~~~~~~~~~~-~d~ilL~SDG~~~~l~~~~~~~~~l~~~ 194 (212)
T PF13672_consen 144 ----------Q-TRSLTGDD----PEPDVQYGSIPLEE-GDVILLCSDGVWDNLRSYEDLEQFLKDL 194 (212)
T ss_dssp ----------C-TTSCCHHC----CCTETEEEEEE--T-T-EEEEE-HHHHTTS-HHHHHHHH----
T ss_pred ----------h-hhccCccc----cccCCeEEEEEcCC-CCEEEEECcCccccCCCHHHHHHHhhhc
Confidence 1 22222211 02334677778888 8999999999999998655 66666553
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.83 E-value=2.8e-18 Score=139.78 Aligned_cols=184 Identities=15% Similarity=0.075 Sum_probs=133.5
Q ss_pred eEEEEEeecCCCCCCCCceEEEeeeccCCCceEEEEEEeCCCCchHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 023418 33 VTHGYHLVKGKAGHPMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQDPESAVRRAYCITD 112 (282)
Q Consensus 33 ~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 112 (282)
+.++.....+.+ ...|.+.+... .++..+++|+||+|+...|..++..+...+.+...... .+.+.+..+|
T Consensus 4 ~~~~~~~~p~~~--~~GD~~~~~~~---~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~----~~~~~l~~~n 74 (193)
T smart00331 4 GLIAQYYEDATQ--VGGDFYDVVKL---PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGI----SLSQILERLN 74 (193)
T ss_pred eEEEEEEcchHh--cCccEEEEEEe---CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCC----CHHHHHHHHH
Confidence 455555555543 48898865433 24468999999999998888888888777765432221 2556677777
Q ss_pred HHHHHhhcccCCCCccEEEEEEE--eCCEEEEEEcCCceeEEEe-CCeeeeCCCCCCCCcHHHHHHhCCCeEecCCCCCC
Q 023418 113 TTILEKAVDLGKGGSTAVTAILI--NCEKLVVANVGDSRAVICK-NGVAKQLSVDHEPSSEREHIEGRGGFVSNFPGDVP 189 (282)
Q Consensus 113 ~~l~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~vGDsr~~~~r-~~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~ 189 (282)
+.+..... ...++|++++++ ..++++++|+||+|+|+++ ++...+++.+.
T Consensus 75 ~~l~~~~~---~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~------------------------ 127 (193)
T smart00331 75 RAIYENGE---DGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL------------------------ 127 (193)
T ss_pred HHHHhcCC---CCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC------------------------
Confidence 77766522 336777777776 5889999999999999999 55544444432
Q ss_pred ccCCeeecccccCCcCCcCCccccceEEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHcc--CCHHHHHHHHHHHHH
Q 023418 190 RVDGQLAVARAFGDKSLKMHLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKNI--KDARSAARHLTEEAL 266 (282)
Q Consensus 190 ~~~~~~~ltralG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGv~d~l~~~ei~~i~~~~--~~~~~~a~~l~~~a~ 266 (282)
+..+|... ..+++...+++.+ +|.|+|+|||+|+.+.++++.+++.+. .++++.+++|++.+.
T Consensus 128 --------~~~lG~~~-----~~~~~~~~~~l~~-gd~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 128 --------GAPLGLEP-----DVEVDVRELTLEP-GDLLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQRILEELL 192 (193)
T ss_pred --------CceeeeCC-----CCcceeEEEeeCC-CCEEEEECCCccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 23455443 3457788889999 899999999999999999999999875 468888988888754
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.75 E-value=1.8e-16 Score=152.41 Aligned_cols=186 Identities=16% Similarity=0.125 Sum_probs=133.4
Q ss_pred CCCceEEEeeeccCCCceEEEEEEeCCCCchHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 023418 47 PMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQDPESAVRRAYCITDTTILEKAVDLGKGG 126 (282)
Q Consensus 47 ~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 126 (282)
.+.|.+.+... +++..+++|+||+|+...|..++..+.+.+.+......+ ...++..+|+.+..... ...
T Consensus 566 vsGD~y~~~~l---~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----~~~ai~~lN~~L~~~~~---~~~ 635 (764)
T TIGR02865 566 VSGDSYSFGKL---SAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFD----REVAIKTVNSILSLRST---DEK 635 (764)
T ss_pred ccCceEEEEEE---CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCC---CCe
Confidence 78999865322 244578999999998877777766655544321111111 35677777777754422 234
Q ss_pred ccEEEEEEEe--CCEEEEEEcCCceeEEEeCCeeeeCCCCCCCCcHHHHHHhCCCeEecCCCCCCccCCeeecccccCCc
Q 023418 127 STAVTAILIN--CEKLVVANVGDSRAVICKNGVAKQLSVDHEPSSEREHIEGRGGFVSNFPGDVPRVDGQLAVARAFGDK 204 (282)
Q Consensus 127 ~tt~~~~~~~--~~~~~~~~vGDsr~~~~r~~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~ltralG~~ 204 (282)
.+|+.+++++ .+++.++++|+++.|+.|++++.+++..+.| +|-.
T Consensus 636 faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP---------------------------------lGil 682 (764)
T TIGR02865 636 FSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP---------------------------------IGIL 682 (764)
T ss_pred EEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce---------------------------------eEec
Confidence 6777777764 7899999999999999999988877654421 2221
Q ss_pred CCcCCccccceEEEEEeCCCCeEEEEEcCCCcCCCCHHH-----HHHHHHc--cCCHHHHHHHHHHHHHhcC---CCCCc
Q 023418 205 SLKMHLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQD-----AADAIKN--IKDARSAARHLTEEALARN---SSDDI 274 (282)
Q Consensus 205 ~~~~~v~~~p~~~~~~l~~~~d~llL~SDGv~d~l~~~e-----i~~i~~~--~~~~~~~a~~l~~~a~~~~---~~DN~ 274 (282)
. ..+++....++.+ ||+|+|+|||+++..++.+ +.+++.+ ..+|++.++.|++.+.+.. ..||+
T Consensus 683 ~-----~~~~~~~~~~L~~-GD~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~~Il~~a~~~~~~~~~DD~ 756 (764)
T TIGR02865 683 D-----EVDVELVRKKLKN-GDLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYLLEKAKELRSGKIKDDM 756 (764)
T ss_pred c-----CCccceEEEEeCC-CCEEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCCCe
Confidence 1 3456778889999 9999999999999876533 6777764 3589999999999998753 47999
Q ss_pred EEEEEEe
Q 023418 275 SCVVVKF 281 (282)
Q Consensus 275 Tvivv~~ 281 (282)
|++++++
T Consensus 757 Tvlvirv 763 (764)
T TIGR02865 757 TVIVAKV 763 (764)
T ss_pred EEEEEEe
Confidence 9999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.66 E-value=2.8e-14 Score=116.02 Aligned_cols=176 Identities=14% Similarity=0.116 Sum_probs=116.5
Q ss_pred CceEEEEEEeCCCCchHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHhhcccCCCCccEEEEEEE--eCCE
Q 023418 62 NELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQDPESAVRRAYCITDTTILEKAVDLGKGGSTAVTAILI--NCEK 139 (282)
Q Consensus 62 ~~~~l~~V~DG~GG~~~a~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~~--~~~~ 139 (282)
++.++++|+|++|..-.|...+..+...+........+ ..+.+..+|+.+....... ...+|++++.+ ..++
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~ 75 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGT 75 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTE
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceE
Confidence 45689999999997766666666555555432111112 5666777777775444322 23445555554 4778
Q ss_pred EEEEEcCCceeEEEeCC--eeeeCCCCCCCCcHHHHHHhCCCeEecCCCCCCccCCeeecccccCCcCCcCCccccceEE
Q 023418 140 LVVANVGDSRAVICKNG--VAKQLSVDHEPSSEREHIEGRGGFVSNFPGDVPRVDGQLAVARAFGDKSLKMHLSSEPHVV 217 (282)
Q Consensus 140 ~~~~~vGDsr~~~~r~~--~~~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~ltralG~~~~~~~v~~~p~~~ 217 (282)
++++|+|++.+++++++ ....+..... .+|-.. ...+...
T Consensus 76 l~~~~aG~~~~l~~~~~~~~~~~~~~~~~---------------------------------~lG~~~-----~~~~~~~ 117 (193)
T PF07228_consen 76 LTYANAGHPPPLLLRPGGREIEQLESEGP---------------------------------PLGIFE-----DIDYQEQ 117 (193)
T ss_dssp EEEEEESSSEEEEEETTCTEEEEETCSSB---------------------------------BCSSSC-----TTCEEEE
T ss_pred EEEeCCCCCCEEEEeccccceeecccCcc---------------------------------ceeeec-----cccccce
Confidence 99999999999999983 3333322221 144333 3566677
Q ss_pred EEEeCCCCeEEEEEcCCCcCCCCHH-------HHHHHHHc--cCCHHHHHHHHHHHHHhc---CCCCCcEEEEEEeC
Q 023418 218 METIDDDTEFIILASDGLWKVMSNQ-------DAADAIKN--IKDARSAARHLTEEALAR---NSSDDISCVVVKFN 282 (282)
Q Consensus 218 ~~~l~~~~d~llL~SDGv~d~l~~~-------ei~~i~~~--~~~~~~~a~~l~~~a~~~---~~~DN~Tvivv~~~ 282 (282)
.+++.+ ||.|+|+|||+++....+ .+.+.+.+ ..++++.++.|.+.+... ...||+|+++++++
T Consensus 118 ~~~l~~-gd~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 118 EIQLEP-GDRLLLYTDGLFEALNEDGEFFGEERLLELLDENRGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp EEE--T-TEEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCHTTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred EEEecc-ccEEEEeCCChhhccCCccchhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 889999 999999999999998543 34566663 367999999999998873 47899999999974
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.78 E-value=2.2e-06 Score=76.73 Aligned_cols=187 Identities=14% Similarity=0.057 Sum_probs=120.8
Q ss_pred CCCceEEEeeeccCCCceEEEEEEeCCCCchHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHHHHHhhcccCCC
Q 023418 47 PMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNF-WQDPESAVRRAYCITDTTILEKAVDLGKG 125 (282)
Q Consensus 47 ~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 125 (282)
..-|.|-+... +.....++|.|..|-.-.|..........+...... ..++ ...++.+|+.+.......
T Consensus 161 vGGD~yd~~~~---~~~~~~i~I~DvsG~Gv~aal~m~~~~~~~~~~~~~~~~~p----~~~l~~~n~~~~~~~~~~--- 230 (367)
T COG2208 161 VGGDYYDFIQL---GEKRLRIGIGDVSGKGVPAALLMLMPKLALRLLLESGPLDP----ADVLETLNRVLKQNLEED--- 230 (367)
T ss_pred cCCceEEEEEE---CCcEEEEEEEeccCCCHHHHHHHHHHHHHHHHhhhcccCCH----HHHHHHHHHHHHhcccCC---
Confidence 45677754433 235688999999885544433322222222211111 2223 345555566565544332
Q ss_pred CccEEEEEEEe--CCEEEEEEcCCceeEEEeCCee---eeCCCCCCCCcHHHHHHhCCCeEecCCCCCCccCCeeecccc
Q 023418 126 GSTAVTAILIN--CEKLVVANVGDSRAVICKNGVA---KQLSVDHEPSSEREHIEGRGGFVSNFPGDVPRVDGQLAVARA 200 (282)
Q Consensus 126 ~~tt~~~~~~~--~~~~~~~~vGDsr~~~~r~~~~---~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~ltra 200 (282)
.-+|+...+++ .+.+.++++|---.++++.+.. ..+. .....
T Consensus 231 ~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~---------------------------------~~g~p 277 (367)
T COG2208 231 MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLT---------------------------------ALGLP 277 (367)
T ss_pred cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEcc---------------------------------CCCce
Confidence 55666666654 7789999999999988887532 1111 23344
Q ss_pred cCCcCCcCCccccceEEEEEeCCCCeEEEEEcCCCcC-------CCCHHHHHHHHHc--cCCHHHHHHHHHHHHHhcC--
Q 023418 201 FGDKSLKMHLSSEPHVVMETIDDDTEFIILASDGLWK-------VMSNQDAADAIKN--IKDARSAARHLTEEALARN-- 269 (282)
Q Consensus 201 lG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGv~d-------~l~~~ei~~i~~~--~~~~~~~a~~l~~~a~~~~-- 269 (282)
+|-.. ...+.+...++.+ ||.++|.|||+.+ .+..+....++.. ..+++++++.+.+...+.-
T Consensus 278 iG~~~-----~~~~~~~~~~l~~-gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~~~ 351 (367)
T COG2208 278 IGLLP-----DYQYEVASLQLEP-GDLLVLYTDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEELQGD 351 (367)
T ss_pred eeecC-----CccchheeEEecC-CCEEEEEcCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 56554 5677788899999 9999999999999 5667777777763 3688999988888877642
Q ss_pred --CCCCcEEEEEEeC
Q 023418 270 --SSDDISCVVVKFN 282 (282)
Q Consensus 270 --~~DN~Tvivv~~~ 282 (282)
..||+|+++++++
T Consensus 352 ~~~~DDiTll~lk~~ 366 (367)
T COG2208 352 QIQDDDITLLVLKVK 366 (367)
T ss_pred ccccCceEEEEEEec
Confidence 4688999999874
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=85.56 E-value=13 Score=32.32 Aligned_cols=104 Identities=9% Similarity=0.008 Sum_probs=56.8
Q ss_pred CCceEEEeeeccCCCceEEEEEEe--CCCCch-HHHHHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHHHHHhhcccC
Q 023418 48 MEDYVVAQFKQVDENELGLFAIFD--GHLSHE-IPDFLRTHLFENILNEPN-FWQDPESAVRRAYCITDTTILEKAVDLG 123 (282)
Q Consensus 48 neD~~~~~~~~~~~~~~~l~~V~D--G~GG~~-~a~~~~~~~~~~l~~~~~-~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 123 (282)
.-|.+-+... +++...|.++| |||++. .|......++..++.... ..........+.+..+|+.+.......
T Consensus 150 ~GD~~d~~~l---~~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~~~p~~~l~~lN~~l~~~~~~~- 225 (303)
T PRK10693 150 PGLVLDIAAL---SDNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPG- 225 (303)
T ss_pred CccEEeeeec---CCCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHhcCCCc-
Confidence 5666653322 34456777777 887663 344445554554443310 000000114566777788777653221
Q ss_pred CCCccEEEEEEEe--CCEEEEEEcCCceeEEEeCCee
Q 023418 124 KGGSTAVTAILIN--CEKLVVANVGDSRAVICKNGVA 158 (282)
Q Consensus 124 ~~~~tt~~~~~~~--~~~~~~~~vGDsr~~~~r~~~~ 158 (282)
. .|+...+++ .+++.+++.|-...++..++++
T Consensus 226 --~-~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 226 --Q-FPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred --e-eeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 2 344444454 5689999999999885444444
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=66.54 E-value=3.8 Score=27.31 Aligned_cols=20 Identities=15% Similarity=0.404 Sum_probs=15.6
Q ss_pred eCCCCeEEEEEcCCCcCCCC
Q 023418 221 IDDDTEFIILASDGLWKVMS 240 (282)
Q Consensus 221 l~~~~d~llL~SDGv~d~l~ 240 (282)
+...|..+++++||+|=.+.
T Consensus 23 l~~~G~Rllva~nGv~lEv~ 42 (72)
T PF09436_consen 23 LERPGHRLLVASNGVFLEVR 42 (72)
T ss_pred cccCCcEEEEecCcEEEEEe
Confidence 34349999999999996554
No 22
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=60.70 E-value=5.9 Score=27.92 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=32.7
Q ss_pred CeEEEEEcCCCcCCCCHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCcE
Q 023418 225 TEFIILASDGLWKVMSNQDAADAIKNIKDARSAARHLTEEALARNSSDDIS 275 (282)
Q Consensus 225 ~d~llL~SDGv~d~l~~~ei~~i~~~~~~~~~~a~~l~~~a~~~~~~DN~T 275 (282)
+|-++|+.||++-.+...+..+-++.. | ..+=.|.+-..+||-.+.++
T Consensus 25 ~D~vlL~qdGV~aAl~~~~~~~sl~~~--p-~~~~alkeDl~ARGl~~~~s 72 (96)
T COG2168 25 GDAVLLLQDGVYAALKGNRYLASLRES--P-IKVYALKEDLLARGLTGQIS 72 (96)
T ss_pred cCeEEEEcccchhhhcCcHHHHHHhcC--c-cceeeehhhHHhccchhhcC
Confidence 788999999999999887777766653 2 23334555556666544443
No 23
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=42.94 E-value=50 Score=26.42 Aligned_cols=45 Identities=22% Similarity=0.413 Sum_probs=32.6
Q ss_pred CeEEEEEcCCCcC-----------CCCHHHHHHHHHcc----CCHHHHHHHHHHHHHhcC
Q 023418 225 TEFIILASDGLWK-----------VMSNQDAADAIKNI----KDARSAARHLTEEALARN 269 (282)
Q Consensus 225 ~d~llL~SDGv~d-----------~l~~~ei~~i~~~~----~~~~~~a~~l~~~a~~~~ 269 (282)
+|.++..|.|||. +|..+.+-+.+.+. .-|.+.|+.|++.-..||
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 6788999999985 34444444545432 458999999999888876
No 24
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=36.13 E-value=49 Score=21.11 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHcc-CCHHHHHHHHHH
Q 023418 239 MSNQDAADAIKNI-KDARSAARHLTE 263 (282)
Q Consensus 239 l~~~ei~~i~~~~-~~~~~~a~~l~~ 263 (282)
.+++||..++..+ -||.+++++|+.
T Consensus 19 hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5889999998875 699999999986
No 25
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=31.70 E-value=2.3e+02 Score=21.53 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=28.4
Q ss_pred cccceEEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHc
Q 023418 211 SSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKN 250 (282)
Q Consensus 211 ~~~p~~~~~~l~~~~d~llL~SDGv~d~l~~~ei~~i~~~ 250 (282)
.|.|.+....++...--++-...|+|..++.++..++.+.
T Consensus 75 LP~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (157)
T PF14014_consen 75 LPPPEILSVEIDEDSIKVYDEKGGWFNPITPEDQNEAQKE 114 (157)
T ss_pred CCCcEEeeeecCccceEEEEccCCccCCCCHHHHHHHHHH
Confidence 3677777777776334455688899988888877766654
No 26
>PF04077 DsrH: DsrH like protein; InterPro: IPR007215 The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulphur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulphide moiety, delivered by the cysteine desulphurase IscS to TusA, then to TusBCD. The activated sulphur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulphur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulphur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulphur flux, such as oxidation from sulphide to molecular sulphur to sulphate [].; GO: 0002143 tRNA wobble position uridine thiolation, 0005737 cytoplasm; PDB: 2HYB_O 2HY5_C 1X9A_A 1RHX_A 2D1P_C.
Probab=27.87 E-value=13 Score=25.86 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=18.5
Q ss_pred CeEEEEEcCCCcCCCCHHHHHHHHH
Q 023418 225 TEFIILASDGLWKVMSNQDAADAIK 249 (282)
Q Consensus 225 ~d~llL~SDGv~d~l~~~ei~~i~~ 249 (282)
+|.|+|.-||++-.+........+.
T Consensus 19 ~D~ilLiqDgV~~a~~~~~~~~~l~ 43 (88)
T PF04077_consen 19 GDAILLIQDGVYAALKGSPYFKLLQ 43 (88)
T ss_dssp T-EEEE-GGGGGGGBTTSTTHHHHH
T ss_pred CCEEEeeHHHHHHHhcCCHHHHHHh
Confidence 8899999999999888766666554
No 27
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=25.83 E-value=2.3e+02 Score=24.38 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=33.6
Q ss_pred CCCCc--hHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHhhccc-CCCCccEEEEEEEeCCEEEEEEc
Q 023418 72 GHLSH--EIPDFLRTHLFENILNEPNFWQDPESAVRRAYCITDTTILEKAVDL-GKGGSTAVTAILINCEKLVVANV 145 (282)
Q Consensus 72 G~GG~--~~a~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~~~~tt~~~~~~~~~~~~~~~v 145 (282)
|.||. .++..+-+.+++.+-+. . .+ ..+.+.-+++-+.+.+.+... +.+|.||+..+.+.....|++.+
T Consensus 184 GIGGt~d~aa~LaK~Allr~ig~~--n-~d--~~~a~lE~elle~iN~lGIGp~GlGG~tTal~V~Ie~~p~H~Asl 255 (273)
T TIGR00722 184 GIGGSFETAAKLAKKALLRPIGER--H-PN--PKIAKLELELLEEINSLGIGPMGLGGKTTALDVKIESAHCHTASL 255 (273)
T ss_pred EeCCCHHHHHHHHHHHhhhhhccC--C-CC--hhHHHHHHHHHHHHHhcCcCCCccCCCeEEEEEEEeecCCcccCC
Confidence 66665 44444444444433221 1 11 222333333333343333333 45788888888887655555443
No 28
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=24.95 E-value=81 Score=21.72 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=24.5
Q ss_pred CCCcCC-CCHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 023418 233 DGLWKV-MSNQDAADAIKNIKDARSAARHLTEEALARN 269 (282)
Q Consensus 233 DGv~d~-l~~~ei~~i~~~~~~~~~~a~~l~~~a~~~~ 269 (282)
|++.++ +-.+|-.++++....+++.+++|.+.+.+.|
T Consensus 22 D~Ll~n~~it~E~y~~V~a~~T~qdkmRkLld~v~akG 59 (85)
T cd08324 22 DNLLKNDYFSTEDAEIVCACPTQPDKVRKILDLVQSKG 59 (85)
T ss_pred HHHhccCCccHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 344443 3334445566666888999999999877765
No 29
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=23.40 E-value=1.2e+02 Score=15.62 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=15.8
Q ss_pred EeCCEEEEEEcCCceeEEE
Q 023418 135 INCEKLVVANVGDSRAVIC 153 (282)
Q Consensus 135 ~~~~~~~~~~vGDsr~~~~ 153 (282)
..++.+|++-.|..|+..+
T Consensus 10 ~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 10 DSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp ETTSEEEEEECCCTEEEEE
T ss_pred eCCCCEEEEECCCCEEEEC
Confidence 3789999999999988754
No 30
>PRK06246 fumarate hydratase; Provisional
Probab=23.32 E-value=2.7e+02 Score=24.04 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhccc-CCCCccEEEEEEEeCCEEEEEEc
Q 023418 106 RAYCITDTTILEKAVDL-GKGGSTAVTAILINCEKLVVANV 145 (282)
Q Consensus 106 ~~~~~~~~~l~~~~~~~-~~~~~tt~~~~~~~~~~~~~~~v 145 (282)
+.-+++-+.+...+... +.+|.||+..+.+.....|++.+
T Consensus 222 ~lE~eLl~~iN~lGIGp~GlGG~tTal~V~Ie~~p~H~Asl 262 (280)
T PRK06246 222 ALEEELLEEINKLGIGPMGLGGKTTALDVKIETYPCHIASL 262 (280)
T ss_pred HHHHHHHHHHHhcCcCCCccCCceEEEEEEEeecCCcccCC
Confidence 33333333444433333 46788899888887655555443
No 31
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=23.07 E-value=50 Score=26.71 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=30.8
Q ss_pred CCCCeEEEEEcCCCcCCCCHHHHHHHHHcc---------------------CCHHHHHHHHHHHHHhc
Q 023418 222 DDDTEFIILASDGLWKVMSNQDAADAIKNI---------------------KDARSAARHLTEEALAR 268 (282)
Q Consensus 222 ~~~~d~llL~SDGv~d~l~~~ei~~i~~~~---------------------~~~~~~a~~l~~~a~~~ 268 (282)
...|..+++++||+|=.+...-+..+..-. .=+....+++++.|.+.
T Consensus 23 ~~~g~r~~~a~~G~~lev~r~wl~~~~~~~~~~~~~~PYg~~~~~~~~~~g~Ip~~l~~~ii~hAr~~ 90 (192)
T TIGR03735 23 EKPGHRFIVAADGVWREVRRPWLHAIQRVAPASPITVPYGAVEETLEFLCGPIPASLLEEFAEAARAA 90 (192)
T ss_pred ccCCcEEEEecCcEEEEEecHHHHHHHHhcccccccccceeeeeeEEEecCCCCHHHHHHHHHHHHhc
Confidence 334899999999999877655544433211 12456667788877763
No 32
>PRK05457 heat shock protein HtpX; Provisional
Probab=20.51 E-value=1.3e+02 Score=25.93 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=27.5
Q ss_pred ceEEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHc
Q 023418 214 PHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKN 250 (282)
Q Consensus 214 p~~~~~~l~~~~d~llL~SDGv~d~l~~~ei~~i~~~ 250 (282)
|........+ ...+|+.|+|+.+.++++|+..++..
T Consensus 105 ~NAfa~G~~~-~~~~V~vt~gLl~~L~~~El~aVlAH 140 (284)
T PRK05457 105 INAFATGASK-NNSLVAVSTGLLQNMSRDEVEAVLAH 140 (284)
T ss_pred ceEEEecCCC-CCeEEEeehHHhhhCCHHHHHHHHHH
Confidence 4444444444 56789999999999999999988864
No 33
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=20.46 E-value=2.4e+02 Score=19.22 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 023418 238 VMSNQDAADAIKNIKDARSAARHLTEEALARNS 270 (282)
Q Consensus 238 ~l~~~ei~~i~~~~~~~~~~a~~l~~~a~~~~~ 270 (282)
.+..+|+..+-.........|+.|++....+|.
T Consensus 30 Vl~~~E~e~i~~~~~t~~dkar~Lid~v~~KG~ 62 (83)
T cd08325 30 VLNEEEMEKIKEENNTIMDKARVLVDSVTEKGQ 62 (83)
T ss_pred CCCHHHHHHHHhccCCHHHHHHHHHHHHHHHhH
Confidence 567788888877656688899999998877663
Done!