Query 023421
Match_columns 282
No_of_seqs 382 out of 2289
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:54:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 2.3E-29 4.9E-34 235.2 9.0 157 68-232 3-167 (371)
2 KOG0713 Molecular chaperone (D 99.9 1.1E-22 2.3E-27 186.3 8.0 76 64-139 11-87 (336)
3 PRK14296 chaperone protein Dna 99.9 1.3E-22 2.7E-27 192.8 7.8 69 68-136 3-71 (372)
4 PRK14288 chaperone protein Dna 99.9 3.6E-22 7.8E-27 189.6 8.0 69 68-136 2-71 (369)
5 KOG0712 Molecular chaperone (D 99.9 4.9E-22 1.1E-26 183.7 8.5 73 67-141 2-74 (337)
6 PRK14286 chaperone protein Dna 99.9 6.2E-22 1.3E-26 188.1 9.0 70 68-137 3-73 (372)
7 PRK14291 chaperone protein Dna 99.8 1.3E-21 2.9E-26 186.5 8.1 69 68-136 2-70 (382)
8 PRK14287 chaperone protein Dna 99.8 1.5E-21 3.3E-26 185.4 7.7 69 68-136 3-71 (371)
9 PTZ00037 DnaJ_C chaperone prot 99.8 3.3E-21 7.2E-26 185.4 9.6 66 68-136 27-92 (421)
10 PRK14279 chaperone protein Dna 99.8 2.5E-21 5.4E-26 185.1 8.5 68 68-135 8-76 (392)
11 PRK14276 chaperone protein Dna 99.8 2.8E-21 6E-26 184.2 8.5 70 68-137 3-72 (380)
12 PRK14282 chaperone protein Dna 99.8 2.2E-21 4.7E-26 184.3 7.7 70 68-137 3-74 (369)
13 PRK14298 chaperone protein Dna 99.8 3E-21 6.5E-26 183.7 7.7 70 67-136 3-72 (377)
14 PRK14285 chaperone protein Dna 99.8 4E-21 8.7E-26 182.2 8.2 68 69-136 3-71 (365)
15 PRK14277 chaperone protein Dna 99.8 1.1E-20 2.5E-25 180.3 9.5 69 68-136 4-73 (386)
16 KOG0715 Molecular chaperone (D 99.8 9.2E-21 2E-25 174.0 8.2 145 70-234 44-191 (288)
17 PRK14283 chaperone protein Dna 99.8 8.2E-21 1.8E-25 180.9 7.7 69 68-136 4-72 (378)
18 PRK14278 chaperone protein Dna 99.8 9E-21 2E-25 180.5 7.8 67 69-135 3-69 (378)
19 PRK14301 chaperone protein Dna 99.8 1.8E-20 3.9E-25 178.2 9.0 70 68-137 3-73 (373)
20 PRK14280 chaperone protein Dna 99.8 1.5E-20 3.3E-25 178.9 8.3 69 69-137 4-72 (376)
21 PRK14297 chaperone protein Dna 99.8 2E-20 4.3E-25 178.4 8.5 70 68-137 3-73 (380)
22 PRK14295 chaperone protein Dna 99.8 1.9E-20 4E-25 179.0 7.7 65 68-132 8-73 (389)
23 PRK14294 chaperone protein Dna 99.8 3.4E-20 7.3E-25 176.0 8.9 69 68-136 3-72 (366)
24 PRK10767 chaperone protein Dna 99.8 3.4E-20 7.4E-25 176.3 8.7 69 68-136 3-72 (371)
25 PRK14281 chaperone protein Dna 99.8 5.8E-20 1.3E-24 176.0 9.8 68 69-136 3-71 (397)
26 PRK14284 chaperone protein Dna 99.8 3.3E-20 7.1E-25 177.5 7.0 68 69-136 1-69 (391)
27 TIGR02349 DnaJ_bact chaperone 99.8 9.8E-20 2.1E-24 172.1 8.6 68 70-137 1-68 (354)
28 PRK14300 chaperone protein Dna 99.8 9.8E-20 2.1E-24 173.1 7.9 68 69-136 3-70 (372)
29 PRK14299 chaperone protein Dna 99.8 1.1E-18 2.5E-23 160.8 10.9 69 68-136 3-71 (291)
30 PF00226 DnaJ: DnaJ domain; I 99.8 6.2E-19 1.3E-23 126.4 7.0 62 70-131 1-64 (64)
31 PRK14290 chaperone protein Dna 99.8 5.6E-19 1.2E-23 167.6 8.6 68 69-136 3-72 (365)
32 PRK14289 chaperone protein Dna 99.8 7.7E-19 1.7E-23 167.8 9.1 69 68-136 4-73 (386)
33 PRK14293 chaperone protein Dna 99.8 9.8E-19 2.1E-23 166.4 8.9 68 69-136 3-70 (374)
34 KOG0716 Molecular chaperone (D 99.8 6.3E-19 1.4E-23 157.1 6.2 70 68-137 30-100 (279)
35 PRK14292 chaperone protein Dna 99.8 1.3E-18 2.9E-23 165.3 7.8 68 69-136 2-69 (371)
36 KOG0718 Molecular chaperone (D 99.7 2.3E-18 5E-23 162.8 8.7 74 66-139 6-83 (546)
37 KOG0719 Molecular chaperone (D 99.7 7.5E-18 1.6E-22 147.1 9.0 70 68-137 13-85 (264)
38 PRK10266 curved DNA-binding pr 99.7 1E-17 2.3E-22 155.4 7.6 67 69-135 4-70 (306)
39 KOG0691 Molecular chaperone (D 99.7 1.2E-17 2.6E-22 153.0 7.6 73 68-140 4-77 (296)
40 KOG0717 Molecular chaperone (D 99.7 2E-17 4.4E-22 156.3 6.6 68 68-135 7-76 (508)
41 PTZ00341 Ring-infected erythro 99.7 3.6E-17 7.8E-22 166.4 7.9 74 64-137 568-641 (1136)
42 smart00271 DnaJ DnaJ molecular 99.7 6.6E-17 1.4E-21 114.1 6.4 58 69-126 1-60 (60)
43 cd06257 DnaJ DnaJ domain or J- 99.7 1.9E-16 4.1E-21 109.7 6.7 54 70-123 1-55 (55)
44 KOG0721 Molecular chaperone (D 99.6 1.3E-15 2.8E-20 132.0 7.5 72 64-135 94-166 (230)
45 PHA03102 Small T antigen; Revi 99.6 1.3E-15 2.8E-20 127.3 6.6 65 69-136 5-71 (153)
46 TIGR03835 termin_org_DnaJ term 99.6 1.7E-15 3.7E-20 151.3 8.2 69 69-137 2-70 (871)
47 COG2214 CbpA DnaJ-class molecu 99.6 1.9E-15 4.1E-20 130.8 7.2 68 67-134 4-73 (237)
48 KOG0720 Molecular chaperone (D 99.5 7.5E-15 1.6E-19 139.1 7.1 76 62-137 228-303 (490)
49 PRK05014 hscB co-chaperone Hsc 99.5 4.5E-14 9.7E-19 120.7 7.2 67 69-135 1-75 (171)
50 PRK01356 hscB co-chaperone Hsc 99.5 5.7E-14 1.2E-18 119.4 7.7 67 69-135 2-74 (166)
51 KOG0624 dsRNA-activated protei 99.5 4.3E-14 9.3E-19 130.5 7.2 72 63-134 388-463 (504)
52 KOG0722 Molecular chaperone (D 99.5 3E-14 6.5E-19 126.1 3.8 73 64-136 28-100 (329)
53 PRK00294 hscB co-chaperone Hsc 99.4 1.9E-13 4.2E-18 116.8 7.5 69 67-135 2-78 (173)
54 PRK03578 hscB co-chaperone Hsc 99.4 2.4E-13 5.2E-18 116.6 7.6 68 68-135 5-80 (176)
55 PTZ00100 DnaJ chaperone protei 99.4 7.9E-13 1.7E-17 105.3 5.9 51 69-122 65-115 (116)
56 COG5269 ZUO1 Ribosome-associat 99.3 1.6E-12 3.5E-17 116.1 6.3 128 63-190 37-184 (379)
57 KOG0714 Molecular chaperone (D 99.3 1.1E-12 2.3E-17 118.7 4.5 68 68-135 2-71 (306)
58 PRK09430 djlA Dna-J like membr 99.3 2.3E-12 5E-17 117.5 6.7 57 68-124 199-263 (267)
59 KOG0550 Molecular chaperone (D 99.3 1.4E-12 3E-17 122.7 4.9 74 63-136 367-442 (486)
60 PHA02624 large T antigen; Prov 99.3 6.1E-12 1.3E-16 124.6 8.8 61 68-131 10-72 (647)
61 COG5407 SEC63 Preprotein trans 99.2 3.1E-11 6.7E-16 114.4 5.5 72 64-135 93-170 (610)
62 PRK01773 hscB co-chaperone Hsc 99.1 1.3E-10 2.7E-15 99.5 7.0 67 69-135 2-76 (173)
63 TIGR00714 hscB Fe-S protein as 99.0 4.8E-10 1E-14 94.6 6.5 55 81-135 3-63 (157)
64 KOG1150 Predicted molecular ch 99.0 5.5E-10 1.2E-14 96.0 5.9 64 68-131 52-117 (250)
65 KOG1789 Endocytosis protein RM 98.4 3.9E-07 8.4E-12 94.1 6.2 54 68-123 1280-1337(2235)
66 KOG0568 Molecular chaperone (D 98.4 4.8E-07 1E-11 79.7 5.8 56 69-124 47-103 (342)
67 KOG0723 Molecular chaperone (D 98.3 1.1E-06 2.4E-11 68.5 5.4 52 70-124 57-108 (112)
68 KOG3192 Mitochondrial J-type c 97.7 6.3E-05 1.4E-09 62.6 5.0 70 66-135 5-82 (168)
69 COG1076 DjlA DnaJ-domain-conta 96.8 0.00099 2.1E-08 57.1 3.5 58 64-121 108-173 (174)
70 KOG0431 Auxilin-like protein a 96.6 0.002 4.3E-08 63.2 4.2 40 81-120 400-447 (453)
71 COG1076 DjlA DnaJ-domain-conta 96.2 0.0042 9.1E-08 53.2 3.4 64 72-135 4-75 (174)
72 PF03656 Pam16: Pam16; InterP 95.9 0.027 5.9E-07 45.9 6.3 55 70-127 59-113 (127)
73 KOG0724 Zuotin and related mol 88.4 0.51 1.1E-05 44.3 3.8 54 81-134 4-62 (335)
74 PF13446 RPT: A repeated domai 84.9 2.3 5.1E-05 29.7 4.8 45 69-123 5-49 (62)
75 PF11833 DUF3353: Protein of u 83.5 3.1 6.7E-05 36.4 5.9 40 78-124 1-40 (194)
76 PF05207 zf-CSL: CSL zinc fing 77.1 0.17 3.6E-06 35.1 -3.3 34 175-234 17-50 (55)
77 COG5552 Uncharacterized conser 74.8 12 0.00027 27.5 5.7 46 68-113 2-47 (88)
78 PF14687 DUF4460: Domain of un 73.8 7.8 0.00017 30.8 5.0 46 79-124 4-54 (112)
79 PF05366 Sarcolipin: Sarcolipi 58.5 4.8 0.0001 23.9 0.7 14 239-252 11-24 (31)
80 PF10041 DUF2277: Uncharacteri 57.9 69 0.0015 23.7 6.8 45 69-113 3-47 (78)
81 TIGR03370 PEPCTERM_Roseo varia 45.6 15 0.00033 21.5 1.4 12 260-271 1-12 (26)
82 KOG3442 Uncharacterized conser 41.5 35 0.00077 27.7 3.4 52 70-124 60-111 (132)
83 PF12434 Malate_DH: Malate deh 40.8 31 0.00068 20.4 2.2 17 83-99 10-26 (28)
84 PF07709 SRR: Seven Residue Re 37.1 19 0.00041 17.7 0.8 13 110-122 2-14 (14)
85 PF13124 DUF3963: Protein of u 31.3 18 0.00039 22.8 0.2 13 241-253 28-40 (40)
86 COG2879 Uncharacterized small 30.8 86 0.0019 22.4 3.6 24 89-113 27-50 (65)
87 COG4420 Predicted membrane pro 28.8 49 0.0011 28.8 2.6 43 233-275 53-98 (191)
88 cd00084 HMG-box High Mobility 28.6 1.6E+02 0.0035 19.6 4.9 43 87-133 12-54 (66)
89 KOG3960 Myogenic helix-loop-he 25.7 46 0.00099 30.3 1.9 15 108-122 127-141 (284)
90 cd01390 HMGB-UBF_HMG-box HMGB- 24.2 2.1E+02 0.0046 19.2 4.8 41 89-133 14-54 (66)
91 PF06210 DUF1003: Protein of u 24.1 58 0.0012 25.7 2.0 18 239-256 5-22 (108)
92 PF01846 FF: FF domain; Inter 23.1 2.2E+02 0.0047 18.5 4.5 45 85-131 1-49 (51)
93 KOG4826 C-8,7 sterol isomerase 22.9 53 0.0011 29.1 1.7 43 231-273 24-66 (229)
94 cd01388 SOX-TCF_HMG-box SOX-TC 21.8 2E+02 0.0044 20.2 4.4 43 87-133 13-55 (72)
95 PF08447 PAS_3: PAS fold; Int 20.7 31 0.00067 24.6 -0.1 30 68-101 5-35 (91)
96 PF00505 HMG_box: HMG (high mo 20.4 2.9E+02 0.0062 18.7 4.9 42 87-132 12-53 (69)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-29 Score=235.17 Aligned_cols=157 Identities=25% Similarity=0.314 Sum_probs=116.1
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-chHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccCCCCCCcCCC
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSK-DSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRG 146 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~ 146 (282)
.+|||+||||+++||.+|||+|||+||++||||+|+ ++.|+++|++|++||+|||||++|+.||+++......+... +
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g-g 81 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG-G 81 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC-C
Confidence 579999999999999999999999999999999999 78899999999999999999999999999988665421111 1
Q ss_pred CccCCccccccccccchHHHHHHHHH-HHH---HhhhccccccccccccchhHHhh---hhcCCCCccccceeeeecCCC
Q 023421 147 NRRYSSEFEDGVRISTWAELRRKLQY-ERH---WKNYNSKEEYSSFYRKAPVREVQ---EENPDGGYKIGYLIAWILGGR 219 (282)
Q Consensus 147 ~~~~~~~f~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~e~~leE~~---ek~~~~g~k~g~~i~~~~GG~ 219 (282)
. ....|.. ++.++...... ... ..+-...+.+..+..+.+|+|+. ++.+.......|..|.++|++
T Consensus 82 ~--g~~~fgg-----~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak 154 (371)
T COG0484 82 F--GFGGFGG-----DFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAK 154 (371)
T ss_pred C--CcCCCCC-----CHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCC
Confidence 0 0111111 22222222110 000 00011133444566788899988 678889999999999999999
Q ss_pred CceeehhhhhhHH
Q 023421 220 GGILLTLCLSFAS 232 (282)
Q Consensus 220 ~G~~l~~c~~cs~ 232 (282)
+|.-+..|..|.-
T Consensus 155 ~gt~~~tC~tC~G 167 (371)
T COG0484 155 PGTDPKTCPTCNG 167 (371)
T ss_pred CCCCCCcCCCCCC
Confidence 9999999999863
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.1e-22 Score=186.32 Aligned_cols=76 Identities=45% Similarity=0.618 Sum_probs=69.0
Q ss_pred hhCCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccCCC
Q 023421 64 AINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD-SRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTD 139 (282)
Q Consensus 64 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~ 139 (282)
.....+|||+||||+++|+..|||+||||||++||||||++ +.|.+.|++|+.||+|||||++|+.||+++..+..
T Consensus 11 ~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~ 87 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK 87 (336)
T ss_pred hhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence 33456899999999999999999999999999999999985 67999999999999999999999999999865533
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=1.3e-22 Score=192.83 Aligned_cols=69 Identities=38% Similarity=0.592 Sum_probs=65.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
..|||+||||+++|+.+|||+|||+||++||||+++++.++++|++|++||+||+||++|+.||+++..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 469999999999999999999999999999999998888999999999999999999999999998754
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=3.6e-22 Score=189.58 Aligned_cols=69 Identities=46% Similarity=0.611 Sum_probs=64.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-chHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSK-DSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
..|||+||||+++||.+|||+|||+||++||||+++ ++.++++|++|++||+||+||.+|+.||+++..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 379999999999999999999999999999999997 466899999999999999999999999998754
No 5
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.9e-22 Score=183.68 Aligned_cols=73 Identities=44% Similarity=0.585 Sum_probs=67.0
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccCCCCC
Q 023421 67 GEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSD 141 (282)
Q Consensus 67 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~ 141 (282)
.+..+|+||||+++|+.+|||+|||+|+++||||||++ +.++|++|++||+|||||++|..||+++..+...+
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g 74 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGG 74 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhccc
Confidence 35789999999999999999999999999999999998 78999999999999999999999999987655433
No 6
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=6.2e-22 Score=188.14 Aligned_cols=70 Identities=44% Similarity=0.613 Sum_probs=64.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-chHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccC
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSK-DSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFR 137 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~ 137 (282)
..|||+||||+++|+.+|||+|||+||++||||+++ ++.++++|++|++||+||+||.+|+.||+++..+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence 369999999999999999999999999999999987 4568899999999999999999999999987543
No 7
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.3e-21 Score=186.53 Aligned_cols=69 Identities=49% Similarity=0.726 Sum_probs=65.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
..|||+||||+++|+.+|||+|||+|+++||||+++++.++++|++|++||+||+||.+|+.||+++..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 369999999999999999999999999999999998888899999999999999999999999997754
No 8
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.5e-21 Score=185.41 Aligned_cols=69 Identities=43% Similarity=0.729 Sum_probs=65.2
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
..|||+||||+++|+.+|||+|||+|+++||||+++++.++++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 369999999999999999999999999999999998777899999999999999999999999998754
No 9
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.84 E-value=3.3e-21 Score=185.37 Aligned_cols=66 Identities=44% Similarity=0.575 Sum_probs=61.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
..|||+||||+++|+.+|||+|||+||++|||||+++ .++|++|++||+||+||.+|+.||+++..
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence 3699999999999999999999999999999999864 48999999999999999999999997654
No 10
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=2.5e-21 Score=185.12 Aligned_cols=68 Identities=46% Similarity=0.692 Sum_probs=64.0
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-chHHHHHHHHHHHHHHHhhhhhhhHhhhhhhc
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSK-DSRAVEVFKTIRCAYEVLSNEVTRIKYDRALK 135 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 135 (282)
.+|||+||||+++|+.+|||+|||+||++||||+++ ++.++++|++|++||+||+||++|+.||+++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 479999999999999999999999999999999987 45689999999999999999999999999864
No 11
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=2.8e-21 Score=184.21 Aligned_cols=70 Identities=40% Similarity=0.659 Sum_probs=65.9
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccC
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFR 137 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~ 137 (282)
..|||+||||+++|+.+|||+|||+|+++||||+++++.++++|++|++||+||+||.+|+.||+++..+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~ 72 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG 72 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc
Confidence 4799999999999999999999999999999999988789999999999999999999999999987543
No 12
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=2.2e-21 Score=184.29 Aligned_cols=70 Identities=43% Similarity=0.662 Sum_probs=64.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc--hHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccC
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD--SRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFR 137 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~ 137 (282)
..|||+||||+++|+.+|||+|||+|+++||||+++. ..++++|++|++||+||+||.+|+.||+++..+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~ 74 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG 74 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence 4699999999999999999999999999999999874 458899999999999999999999999976543
No 13
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3e-21 Score=183.71 Aligned_cols=70 Identities=47% Similarity=0.705 Sum_probs=65.8
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 67 GEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 67 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
...|||+||||+++|+.+|||+|||+||++||||+++++.++++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 3 TTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 3479999999999999999999999999999999998877899999999999999999999999998754
No 14
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4e-21 Score=182.16 Aligned_cols=68 Identities=43% Similarity=0.674 Sum_probs=63.8
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 69 PDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD-SRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 69 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
.|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||+||+||.+|..||+++..
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 699999999999999999999999999999999874 56889999999999999999999999997654
No 15
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.1e-20 Score=180.30 Aligned_cols=69 Identities=45% Similarity=0.706 Sum_probs=64.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD-SRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||+||+||.+|+.||+++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence 4799999999999999999999999999999999974 56889999999999999999999999997754
No 16
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=9.2e-21 Score=174.05 Aligned_cols=145 Identities=30% Similarity=0.345 Sum_probs=104.6
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccCCCCCCcCCCCcc
Q 023421 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRR 149 (282)
Q Consensus 70 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~~~ 149 (282)
|||+||||+++|+..|||+||++|+++||||.+.++.+.++|++|.+|||||+|+++|..||..+..+..... + .
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~~~---g--~ 118 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGEFG---G--N 118 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcccccc---C--C
Confidence 9999999999999999999999999999999999999999999999999999999999999998875410000 0 0
Q ss_pred CCccccccccccchHHHHHHHHHHHHHhhhccccccccccccchhHHhhh---hcCCCCccccceeeeecCCCCceeehh
Q 023421 150 YSSEFEDGVRISTWAELRRKLQYERHWKNYNSKEEYSSFYRKAPVREVQE---ENPDGGYKIGYLIAWILGGRGGILLTL 226 (282)
Q Consensus 150 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~leE~~e---k~~~~g~k~g~~i~~~~GG~~G~~l~~ 226 (282)
..+.|+..+. | . ..-...+....+....+|+|+.. +.+......-|..|++.|...|....-
T Consensus 119 ~~~~~~~~~~---~----------~--~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 183 (288)
T KOG0715|consen 119 PFDVFLEFFG---G----------K--MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRES 183 (288)
T ss_pred ccchHHHhhc---c----------c--ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCccccccccc
Confidence 0111111111 1 0 00111223444557777888773 345555566777788888888888888
Q ss_pred hhhhHHhh
Q 023421 227 CLSFASWV 234 (282)
Q Consensus 227 c~~cs~w~ 234 (282)
|..|+.-.
T Consensus 184 ~~~~~~~~ 191 (288)
T KOG0715|consen 184 CKTCSGRG 191 (288)
T ss_pred chhhhCcc
Confidence 88887655
No 17
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=8.2e-21 Score=180.87 Aligned_cols=69 Identities=51% Similarity=0.739 Sum_probs=65.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
..|||+||||+++|+.+|||+|||+||++||||+++++.++++|++|++||+||+||.+|+.||+++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~ 72 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA 72 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence 579999999999999999999999999999999998778999999999999999999999999997654
No 18
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=9e-21 Score=180.54 Aligned_cols=67 Identities=51% Similarity=0.672 Sum_probs=64.3
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhc
Q 023421 69 PDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALK 135 (282)
Q Consensus 69 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 135 (282)
.|||+||||+++|+.+|||+|||+||++||||+++++.++++|++|++||+||+||.+|+.||+++.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 6999999999999999999999999999999999987889999999999999999999999999764
No 19
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.8e-20 Score=178.18 Aligned_cols=70 Identities=44% Similarity=0.651 Sum_probs=64.6
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccC
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD-SRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFR 137 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~ 137 (282)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||+||+||.+|+.||+++..+
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g 73 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAG 73 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccc
Confidence 3799999999999999999999999999999999874 568899999999999999999999999987543
No 20
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.5e-20 Score=178.94 Aligned_cols=69 Identities=49% Similarity=0.749 Sum_probs=65.5
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccC
Q 023421 69 PDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFR 137 (282)
Q Consensus 69 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~ 137 (282)
.|||+||||+++|+.+|||+|||+|+++||||+++++.++++|++|++||+||+||.+|+.||+++..+
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 72 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG 72 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence 699999999999999999999999999999999988889999999999999999999999999987543
No 21
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2e-20 Score=178.39 Aligned_cols=70 Identities=43% Similarity=0.625 Sum_probs=64.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccC
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD-SRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFR 137 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~ 137 (282)
..|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||+||+||.+|+.||+++..+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~ 73 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD 73 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence 3699999999999999999999999999999999974 568899999999999999999999999987543
No 22
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.9e-20 Score=178.97 Aligned_cols=65 Identities=58% Similarity=0.866 Sum_probs=61.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhhHhhhh
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD-SRAVEVFKTIRCAYEVLSNEVTRIKYDR 132 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 132 (282)
..|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||+||+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 4699999999999999999999999999999999874 4688999999999999999999999998
No 23
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.4e-20 Score=175.98 Aligned_cols=69 Identities=43% Similarity=0.613 Sum_probs=64.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD-SRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
..|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence 4799999999999999999999999999999999974 56889999999999999999999999998754
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.4e-20 Score=176.27 Aligned_cols=69 Identities=49% Similarity=0.703 Sum_probs=64.1
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-chHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSK-DSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
..|||+||||+++|+.+|||+|||+|+++||||+++ ++.++++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 369999999999999999999999999999999987 456889999999999999999999999997654
No 25
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.8e-20 Score=176.03 Aligned_cols=68 Identities=51% Similarity=0.715 Sum_probs=63.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 69 PDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD-SRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 69 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
.|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~ 71 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA 71 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence 699999999999999999999999999999999974 56789999999999999999999999997654
No 26
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=3.3e-20 Score=177.46 Aligned_cols=68 Identities=47% Similarity=0.664 Sum_probs=63.6
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 69 PDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD-SRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 69 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
.|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||+||+||.+|+.||+++..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence 389999999999999999999999999999999984 56889999999999999999999999998754
No 27
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.80 E-value=9.8e-20 Score=172.10 Aligned_cols=68 Identities=50% Similarity=0.740 Sum_probs=64.0
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccC
Q 023421 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFR 137 (282)
Q Consensus 70 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~ 137 (282)
|||+||||+++|+.+|||+|||+|+++||||+++.+.++++|++|++||+||+||.+|..||+++..+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~ 68 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG 68 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence 79999999999999999999999999999999987778899999999999999999999999976543
No 28
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=9.8e-20 Score=173.15 Aligned_cols=68 Identities=44% Similarity=0.710 Sum_probs=64.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 69 PDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 69 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
.|||+||||+++|+.+|||+|||+++++||||+++++.++++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 70 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD 70 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence 69999999999999999999999999999999998777889999999999999999999999997653
No 29
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=1.1e-18 Score=160.80 Aligned_cols=69 Identities=46% Similarity=0.648 Sum_probs=65.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
..|||+||||+++|+.+|||+|||+|+++||||+++++.++++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 369999999999999999999999999999999998888999999999999999999999999997754
No 30
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.77 E-value=6.2e-19 Score=126.39 Aligned_cols=62 Identities=42% Similarity=0.739 Sum_probs=59.4
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchH--HHHHHHHHHHHHHHhhhhhhhHhhh
Q 023421 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSR--AVEVFKTIRCAYEVLSNEVTRIKYD 131 (282)
Q Consensus 70 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~~R~~YD 131 (282)
|||+||||+++++.++||++|+++++++|||+++... +.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999988755 8899999999999999999999998
No 31
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.6e-19 Score=167.58 Aligned_cols=68 Identities=47% Similarity=0.719 Sum_probs=63.6
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCch--HHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 69 PDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDS--RAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 69 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
.|||+||||+++|+.+|||+|||+|++++|||+++.. .++++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 6999999999999999999999999999999999753 5889999999999999999999999997653
No 32
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=7.7e-19 Score=167.82 Aligned_cols=69 Identities=43% Similarity=0.631 Sum_probs=64.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD-SRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
..|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||+||+||.+|+.||+++..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 4799999999999999999999999999999999974 46889999999999999999999999997654
No 33
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=9.8e-19 Score=166.43 Aligned_cols=68 Identities=51% Similarity=0.784 Sum_probs=64.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 69 PDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 69 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
.|||+||||+++|+.+|||+|||+|+++||||+++++.++++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 69999999999999999999999999999999998878999999999999999999999999997653
No 34
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.3e-19 Score=157.06 Aligned_cols=70 Identities=44% Similarity=0.670 Sum_probs=65.9
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccC
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD-SRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFR 137 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~ 137 (282)
..|+|+|||++++|+.++|||+||+|+++||||++++ |++.++|++||+||+||+||.+|..||+++..+
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~ 100 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELG 100 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHH
Confidence 4699999999999999999999999999999999997 779999999999999999999999999986643
No 35
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.3e-18 Score=165.34 Aligned_cols=68 Identities=47% Similarity=0.670 Sum_probs=64.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 69 PDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 69 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
.|||+||||+++|+.++||+|||+|+++||||++++..++++|++|++||+||+||.+|+.||+++..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 58999999999999999999999999999999998878999999999999999999999999997654
No 36
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.3e-18 Score=162.75 Aligned_cols=74 Identities=39% Similarity=0.539 Sum_probs=68.0
Q ss_pred CCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchH----HHHHHHHHHHHHHHhhhhhhhHhhhhhhccCCC
Q 023421 66 NGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSR----AVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTD 139 (282)
Q Consensus 66 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~ 139 (282)
.++.|||.+|+|+++||.+|||+|||++++.|||||..+++ |++.|+.|.+|||||+||++|+.||.++..+.+
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 34569999999999999999999999999999999988654 889999999999999999999999999887755
No 37
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=7.5e-18 Score=147.07 Aligned_cols=70 Identities=39% Similarity=0.628 Sum_probs=63.9
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccC
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD---SRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFR 137 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~---~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~ 137 (282)
..|+|+||||.++|+..+||+|||++++++|||+++. ..+.+.|++++.||.||+|.++|+.||..+...
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 4599999999999999999999999999999999963 347899999999999999999999999976643
No 38
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.71 E-value=1e-17 Score=155.41 Aligned_cols=67 Identities=49% Similarity=0.755 Sum_probs=64.1
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhc
Q 023421 69 PDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALK 135 (282)
Q Consensus 69 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 135 (282)
.|||+||||+++++.+|||+|||+|+++||||+++++.++++|++|++||++|+||.+|+.||+++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 6999999999999999999999999999999999877899999999999999999999999999753
No 39
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.2e-17 Score=152.97 Aligned_cols=73 Identities=44% Similarity=0.690 Sum_probs=67.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-chHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccCCCC
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSK-DSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDS 140 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~ 140 (282)
..|||+||||+.+++.++||+|||+.++++|||||+ +|+|.++|+.|.+||+||+|+..|..||..+..+...
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~ 77 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSA 77 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccc
Confidence 579999999999999999999999999999999998 5679999999999999999999999999988765443
No 40
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2e-17 Score=156.31 Aligned_cols=68 Identities=43% Similarity=0.636 Sum_probs=63.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCch--HHHHHHHHHHHHHHHhhhhhhhHhhhhhhc
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDS--RAVEVFKTIRCAYEVLSNEVTRIKYDRALK 135 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 135 (282)
.+.||+||||.++|+..+||++||+||++|||||+++. .+++.|+.|+.||+|||||..|+.||....
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 47899999999999999999999999999999998864 588999999999999999999999998754
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.69 E-value=3.6e-17 Score=166.43 Aligned_cols=74 Identities=24% Similarity=0.336 Sum_probs=68.2
Q ss_pred hhCCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccC
Q 023421 64 AINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFR 137 (282)
Q Consensus 64 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~ 137 (282)
.+.+..+||+||||+++|+..+||+|||+||++|||||++++.+.++|+.|++||+||+||.+|+.||+++..+
T Consensus 568 ~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 568 IEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 34456899999999999999999999999999999999988778899999999999999999999999987654
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.68 E-value=6.6e-17 Score=114.10 Aligned_cols=58 Identities=52% Similarity=0.772 Sum_probs=54.2
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHHHHhhhhhh
Q 023421 69 PDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSK--DSRAVEVFKTIRCAYEVLSNEVT 126 (282)
Q Consensus 69 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~--~~~a~~~f~~i~~Ay~vLsdp~~ 126 (282)
.|||+||||+++++.++||++|+++++++|||+++ .+.+.+.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 48999999999999999999999999999999998 56788999999999999999853
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.66 E-value=1.9e-16 Score=109.69 Aligned_cols=54 Identities=56% Similarity=0.807 Sum_probs=51.6
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc-hHHHHHHHHHHHHHHHhhh
Q 023421 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD-SRAVEVFKTIRCAYEVLSN 123 (282)
Q Consensus 70 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd 123 (282)
|||+||||+++++.++||++||++++++|||+++. ..+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999987 6788999999999999986
No 44
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.3e-15 Score=131.99 Aligned_cols=72 Identities=32% Similarity=0.528 Sum_probs=64.5
Q ss_pred hhCCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc-hHHHHHHHHHHHHHHHhhhhhhhHhhhhhhc
Q 023421 64 AINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD-SRAVEVFKTIRCAYEVLSNEVTRIKYDRALK 135 (282)
Q Consensus 64 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 135 (282)
......|+||||||+++++..|||+|||+|+++|||||+++ ...++.|..|++||+.|+|+..|..|..++.
T Consensus 94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 34456799999999999999999999999999999999987 4567788899999999999999999998643
No 45
>PHA03102 Small T antigen; Reviewed
Probab=99.60 E-value=1.3e-15 Score=127.27 Aligned_cols=65 Identities=23% Similarity=0.366 Sum_probs=59.9
Q ss_pred CCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 69 PDHYKVLGVAQSA--TLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 69 ~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
..+|+||||+++| +.++||+|||++++++||||+++ +++|++|++||++|+|+.+|..||..+..
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~---~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD---EEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch---hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 4689999999999 99999999999999999999764 47999999999999999999999987653
No 46
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.60 E-value=1.7e-15 Score=151.27 Aligned_cols=69 Identities=42% Similarity=0.623 Sum_probs=65.1
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccC
Q 023421 69 PDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFR 137 (282)
Q Consensus 69 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~ 137 (282)
.|||+||||+++|+.++||++||+|++++|||+++.+.+.++|++|++||++|+||.+|+.||+++..+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 699999999999999999999999999999999988778899999999999999999999999987644
No 47
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.9e-15 Score=130.77 Aligned_cols=68 Identities=47% Similarity=0.691 Sum_probs=63.6
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchH--HHHHHHHHHHHHHHhhhhhhhHhhhhhh
Q 023421 67 GEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSR--AVEVFKTIRCAYEVLSNEVTRIKYDRAL 134 (282)
Q Consensus 67 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 134 (282)
...+||+||||+++|+..|||++||++++++|||+++... +.+.|+.|++||++|+|+.+|..||...
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 4579999999999999999999999999999999998654 8899999999999999999999999853
No 48
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.5e-15 Score=139.06 Aligned_cols=76 Identities=36% Similarity=0.491 Sum_probs=70.0
Q ss_pred HhhhCCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhccC
Q 023421 62 AAAINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFR 137 (282)
Q Consensus 62 ~~~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~ 137 (282)
.....+.+|+|.+|||+.+++.++|||.||++|...|||||..+.|+|.|+.++.||++|+|+.+|..||..+...
T Consensus 228 l~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke 303 (490)
T KOG0720|consen 228 LSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE 303 (490)
T ss_pred hhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 3444458899999999999999999999999999999999999999999999999999999999999999987643
No 49
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.49 E-value=4.5e-14 Score=120.68 Aligned_cols=67 Identities=27% Similarity=0.442 Sum_probs=58.7
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCchH------HHHHHHHHHHHHHHhhhhhhhHhhhhhhc
Q 023421 69 PDHYKVLGVAQS--ATLADIKRAYRLLARKYHPDVSKDSR------AVEVFKTIRCAYEVLSNEVTRIKYDRALK 135 (282)
Q Consensus 69 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 135 (282)
.|||+||||++. ++..+||++||++++++|||+..... +.+.|..||+||++|+||.+|+.|+-.+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 389999999996 68899999999999999999975421 45689999999999999999999997654
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.49 E-value=5.7e-14 Score=119.42 Aligned_cols=67 Identities=25% Similarity=0.479 Sum_probs=58.6
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCchH----HHHHHHHHHHHHHHhhhhhhhHhhhhhhc
Q 023421 69 PDHYKVLGVAQS--ATLADIKRAYRLLARKYHPDVSKDSR----AVEVFKTIRCAYEVLSNEVTRIKYDRALK 135 (282)
Q Consensus 69 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 135 (282)
.|||+||||++. ++..+|+++||++++++|||+..... +.+.+..||+||+||+||.+|+.|+-.+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 589999999986 78999999999999999999986532 23457899999999999999999987664
No 51
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.49 E-value=4.3e-14 Score=130.49 Aligned_cols=72 Identities=40% Similarity=0.606 Sum_probs=65.6
Q ss_pred hhhCCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchH----HHHHHHHHHHHHHHhhhhhhhHhhhhhh
Q 023421 63 AAINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSR----AVEVFKTIRCAYEVLSNEVTRIKYDRAL 134 (282)
Q Consensus 63 ~~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 134 (282)
......+|||+||||.++|+..||-+|||++|.++|||-..+.. ++++|..|..|-+||+||++|+.||..-
T Consensus 388 kkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 388 KKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred HHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 34566799999999999999999999999999999999987653 7889999999999999999999999854
No 52
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3e-14 Score=126.07 Aligned_cols=73 Identities=42% Similarity=0.698 Sum_probs=68.1
Q ss_pred hhCCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 64 AINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 64 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
--....|.|+||||+++++..||++|||+|+++||||+++++.+.+.|+.|.+||++|.|.+.|..||-.+..
T Consensus 28 LYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldh 100 (329)
T KOG0722|consen 28 LYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDH 100 (329)
T ss_pred hcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcC
Confidence 3456789999999999999999999999999999999999999999999999999999999999999987764
No 53
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.44 E-value=1.9e-13 Score=116.81 Aligned_cols=69 Identities=33% Similarity=0.514 Sum_probs=60.8
Q ss_pred CCCCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCchH------HHHHHHHHHHHHHHhhhhhhhHhhhhhhc
Q 023421 67 GEPDHYKVLGVAQS--ATLADIKRAYRLLARKYHPDVSKDSR------AVEVFKTIRCAYEVLSNEVTRIKYDRALK 135 (282)
Q Consensus 67 ~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 135 (282)
+..|||++|||++. .+..+|+++||++++++|||+..... +.+.+..||+||+||+||.+|+.|+-.+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 46799999999987 67899999999999999999976422 45679999999999999999999998664
No 54
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.44 E-value=2.4e-13 Score=116.63 Aligned_cols=68 Identities=25% Similarity=0.431 Sum_probs=58.5
Q ss_pred CCCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCc-hH-----HHHHHHHHHHHHHHhhhhhhhHhhhhhhc
Q 023421 68 EPDHYKVLGVAQS--ATLADIKRAYRLLARKYHPDVSKD-SR-----AVEVFKTIRCAYEVLSNEVTRIKYDRALK 135 (282)
Q Consensus 68 ~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~-~~-----a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 135 (282)
..|||+||||++. ++..+||++||++++++|||+... +. +.+.+..||+||++|+||.+|+.|+-.+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 4799999999985 689999999999999999999764 22 33446899999999999999999997654
No 55
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.37 E-value=7.9e-13 Score=105.32 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=47.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhh
Q 023421 69 PDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLS 122 (282)
Q Consensus 69 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLs 122 (282)
.++|+||||+++++.+|||++||++++++|||+.++ .+.|++|++||++|.
T Consensus 65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs---~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS---TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999643 468899999999995
No 56
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.6e-12 Score=116.11 Aligned_cols=128 Identities=24% Similarity=0.318 Sum_probs=90.3
Q ss_pred hhhCCCCCchhhcCCCC---CCCHHHHHHHHHHHHHHhCCCCC---CchHHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 63 AAINGEPDHYKVLGVAQ---SATLADIKRAYRLLARKYHPDVS---KDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 63 ~~~~~~~d~Y~iLgv~~---~a~~~~Ik~ayr~l~~~~HPDk~---~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
....+..|+|.+|||+. .+++.+|.++.++.+.+||||+. ++....+.|+.|+.||+||+|+.+|..||..-..
T Consensus 37 ~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~ 116 (379)
T COG5269 37 FKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFD 116 (379)
T ss_pred hhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccc
Confidence 45566789999999994 57889999999999999999996 3345778999999999999999999999975432
Q ss_pred CCCCCCcCCCCc----cCCccccccccccc----------hHHHHHHHHHHHHHhhhccccccccccc
Q 023421 137 RTDSDRSRRGNR----RYSSEFEDGVRIST----------WAELRRKLQYERHWKNYNSKEEYSSFYR 190 (282)
Q Consensus 137 ~~~~~~~~~~~~----~~~~~f~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (282)
.....+...... -+++.|+...++.. -+......+++.||.+|+.|+.|.+...
T Consensus 117 advppp~~~t~~~Ffe~w~pvFe~earFSkKqPvPsLg~~dss~keVe~FY~FW~nFdSWRtFE~lde 184 (379)
T COG5269 117 ADVPPPRIYTPDEFFEVWEPVFEREARFSKKQPVPSLGPSDSSLKEVEEFYEFWSNFDSWRTFEPLDE 184 (379)
T ss_pred cCCCCccCCCchhHHHHHHHHHHhhhhccccCCCCCCCCchhHHHHHHHHHHHHHhccccccccchhh
Confidence 222211111111 12233332222211 1235667889999999999999876544
No 57
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.1e-12 Score=118.73 Aligned_cols=68 Identities=50% Similarity=0.669 Sum_probs=63.2
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCch--HHHHHHHHHHHHHHHhhhhhhhHhhhhhhc
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDS--RAVEVFKTIRCAYEVLSNEVTRIKYDRALK 135 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 135 (282)
..|+|+||+|.++|+.++||+|||++++++||||++.+ .++++|++|.+||++|+||.+|..||+++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46999999999999999999999999999999998877 566689999999999999999999999876
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.32 E-value=2.3e-12 Score=117.52 Aligned_cols=57 Identities=42% Similarity=0.578 Sum_probs=51.1
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc--------hHHHHHHHHHHHHHHHhhhh
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD--------SRAVEVFKTIRCAYEVLSNE 124 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--------~~a~~~f~~i~~Ay~vLsdp 124 (282)
..++|+||||++++|.+|||++||+|+++||||+... +.++++|++|++||++|+..
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3799999999999999999999999999999999642 24789999999999999853
No 59
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.4e-12 Score=122.74 Aligned_cols=74 Identities=35% Similarity=0.579 Sum_probs=66.7
Q ss_pred hhhCCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCch--HHHHHHHHHHHHHHHhhhhhhhHhhhhhhcc
Q 023421 63 AAINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDS--RAVEVFKTIRCAYEVLSNEVTRIKYDRALKF 136 (282)
Q Consensus 63 ~~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 136 (282)
-.+++..|||.|||+.++++..|||++||++++.+|||++... +++.+|+++-+||.||+||.+|..||.....
T Consensus 367 LkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dl 442 (486)
T KOG0550|consen 367 LKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDL 442 (486)
T ss_pred HHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccch
Confidence 3455678999999999999999999999999999999998765 5888999999999999999999999986543
No 60
>PHA02624 large T antigen; Provisional
Probab=99.30 E-value=6.1e-12 Score=124.63 Aligned_cols=61 Identities=26% Similarity=0.466 Sum_probs=56.8
Q ss_pred CCCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhh
Q 023421 68 EPDHYKVLGVAQSA--TLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYD 131 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD 131 (282)
..++|+||||+++| +.++||+|||+++++|||||.++ +++|++|++||++|+|+.+|..|+
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd---eekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD---EEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc---HHHHHHHHHHHHHHhcHHHhhhcc
Confidence 36899999999999 99999999999999999999754 579999999999999999999994
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.16 E-value=3.1e-11 Score=114.41 Aligned_cols=72 Identities=35% Similarity=0.525 Sum_probs=64.3
Q ss_pred hhCCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc------hHHHHHHHHHHHHHHHhhhhhhhHhhhhhhc
Q 023421 64 AINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD------SRAVEVFKTIRCAYEVLSNEVTRIKYDRALK 135 (282)
Q Consensus 64 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~------~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 135 (282)
......|+|||||++.+++..+||++||+|+.|+||||.++ ..-++.+++|++||+.|+|...|..|-.++.
T Consensus 93 ~~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 93 EYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred HHHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 44456899999999999999999999999999999999875 2367889999999999999999999987654
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.12 E-value=1.3e-10 Score=99.52 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=58.4
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCchH------HHHHHHHHHHHHHHhhhhhhhHhhhhhhc
Q 023421 69 PDHYKVLGVAQS--ATLADIKRAYRLLARKYHPDVSKDSR------AVEVFKTIRCAYEVLSNEVTRIKYDRALK 135 (282)
Q Consensus 69 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 135 (282)
.|||++||+++. .+..+++++||++.+++|||+..... +.+.-..||+||.+|+||.+|+.|=-.+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 589999999986 89999999999999999999975432 44567889999999999999999987655
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.02 E-value=4.8e-10 Score=94.60 Aligned_cols=55 Identities=29% Similarity=0.442 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCch------HHHHHHHHHHHHHHHhhhhhhhHhhhhhhc
Q 023421 81 ATLADIKRAYRLLARKYHPDVSKDS------RAVEVFKTIRCAYEVLSNEVTRIKYDRALK 135 (282)
Q Consensus 81 a~~~~Ik~ayr~l~~~~HPDk~~~~------~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 135 (282)
.+..+|+++||++++++|||+.... .+.+.+..||+||++|+||.+|+.|+-.+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 4778999999999999999986532 156789999999999999999999998765
No 64
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=5.5e-10 Score=95.97 Aligned_cols=64 Identities=33% Similarity=0.516 Sum_probs=58.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCch--HHHHHHHHHHHHHHHhhhhhhhHhhh
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDS--RAVEVFKTIRCAYEVLSNEVTRIKYD 131 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsdp~~R~~YD 131 (282)
+-|+|+||.|.|..+.++||+.||+|++..|||||+++ .|...|..+.+||..|-|+..|..-+
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 46999999999999999999999999999999999975 48889999999999999999776644
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=3.9e-07 Score=94.12 Aligned_cols=54 Identities=37% Similarity=0.552 Sum_probs=46.7
Q ss_pred CCCchhhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhh
Q 023421 68 EPDHYKVLGVAQS----ATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSN 123 (282)
Q Consensus 68 ~~d~Y~iLgv~~~----a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd 123 (282)
..+.|+||.|+-+ -..+.||++|+|||.+||||||+. ..++|..+|+|||.|+.
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE--GRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE--GREMFERVNKAYELLSS 1337 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch--HHHHHHHHHHHHHHHHH
Confidence 4578999999843 345889999999999999999886 56899999999999983
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=4.8e-07 Score=79.72 Aligned_cols=56 Identities=27% Similarity=0.539 Sum_probs=52.1
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHH-Hhhhh
Q 023421 69 PDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYE-VLSNE 124 (282)
Q Consensus 69 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~-vLsdp 124 (282)
..+|.||||..+++..++|.+|.+|++++|||...+....++|.+|.+||. ||+.-
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999888878899999999999 88754
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.1e-06 Score=68.46 Aligned_cols=52 Identities=27% Similarity=0.301 Sum_probs=45.2
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhh
Q 023421 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNE 124 (282)
Q Consensus 70 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp 124 (282)
..-.||||+++++.+.||.++||+...+|||+.+.| -.-.+||||+++|...
T Consensus 57 EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 57 EAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP---YLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH---HHHHHHHHHHHHHhcc
Confidence 344699999999999999999999999999999987 3346799999999753
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=6.3e-05 Score=62.64 Aligned_cols=70 Identities=23% Similarity=0.398 Sum_probs=57.0
Q ss_pred CCCCCchhhcCCC--CCCCHHHHHHHHHHHHHHhCCCCCCc------hHHHHHHHHHHHHHHHhhhhhhhHhhhhhhc
Q 023421 66 NGEPDHYKVLGVA--QSATLADIKRAYRLLARKYHPDVSKD------SRAVEVFKTIRCAYEVLSNEVTRIKYDRALK 135 (282)
Q Consensus 66 ~~~~d~Y~iLgv~--~~a~~~~Ik~ayr~l~~~~HPDk~~~------~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 135 (282)
....+||.++|.. ....+..++.-|....++.|||+... ..+.+...++|+||.+|.||-+|+.|=..+.
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4457999999865 44566677778999999999999543 2477889999999999999999999986654
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00099 Score=57.07 Aligned_cols=58 Identities=36% Similarity=0.468 Sum_probs=48.3
Q ss_pred hhCCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCc--------hHHHHHHHHHHHHHHHh
Q 023421 64 AINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD--------SRAVEVFKTIRCAYEVL 121 (282)
Q Consensus 64 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--------~~a~~~f~~i~~Ay~vL 121 (282)
......+.|.+|++...++..+||++|+++...+|||+... ..+.+++++|++||+-+
T Consensus 108 ~~~~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 108 EQLDREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred HcccchhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 33344799999999999999999999999999999998532 23678899999999753
No 70
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.62 E-value=0.002 Score=63.20 Aligned_cols=40 Identities=33% Similarity=0.440 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCchH--------HHHHHHHHHHHHHH
Q 023421 81 ATLADIKRAYRLLARKYHPDVSKDSR--------AVEVFKTIRCAYEV 120 (282)
Q Consensus 81 a~~~~Ik~ayr~l~~~~HPDk~~~~~--------a~~~f~~i~~Ay~v 120 (282)
.+.++||++|||..+..||||.+... +++.|..+++|++.
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999976532 55666667776654
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0042 Score=53.18 Aligned_cols=64 Identities=30% Similarity=0.495 Sum_probs=49.3
Q ss_pred hhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCchH------HHHHHHHHHHHHHHhhhhhhhHhhhhhhc
Q 023421 72 YKVLGVAQSA--TLADIKRAYRLLARKYHPDVSKDSR------AVEVFKTIRCAYEVLSNEVTRIKYDRALK 135 (282)
Q Consensus 72 Y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 135 (282)
...+|..+.. ..+.++..|+.+.+.+|||+..... +.+.+..++.||.+|.||-+|..|=..+.
T Consensus 4 ~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 4 FVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred ccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 3344444332 3456899999999999999987543 34578899999999999999999987665
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.85 E-value=0.027 Score=45.86 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=40.6
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhh
Q 023421 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTR 127 (282)
Q Consensus 70 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R 127 (282)
.-..||||++..+.++|.+.|.+|-..++|++.+.. -.-.+|..|.+.|..+-+.
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSf---YLQSKV~rAKErl~~El~~ 113 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSF---YLQSKVFRAKERLEQELKE 113 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-H---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCH---HHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999987754 4446688899988765533
No 73
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=88.37 E-value=0.51 Score=44.26 Aligned_cols=54 Identities=30% Similarity=0.350 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC-----chHHHHHHHHHHHHHHHhhhhhhhHhhhhhh
Q 023421 81 ATLADIKRAYRLLARKYHPDVSK-----DSRAVEVFKTIRCAYEVLSNEVTRIKYDRAL 134 (282)
Q Consensus 81 a~~~~Ik~ayr~l~~~~HPDk~~-----~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 134 (282)
++..+|+.+|+..++.+|||+.. ....++.|+.|.+||+||++..+|...|+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 56788999999999999999874 2235678999999999999977767777655
No 74
>PF13446 RPT: A repeated domain in UCH-protein
Probab=84.89 E-value=2.3 Score=29.71 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=33.2
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhh
Q 023421 69 PDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSN 123 (282)
Q Consensus 69 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd 123 (282)
.+.|++|||+++.+.+.|-.+|+.... ..| .....+.+|..++.+
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P---------~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP---------SQKDTLREALRVIAE 49 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh---------HhHHHHHHHHHHHHH
Confidence 467999999999999999999999877 222 233445666666654
No 75
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=83.46 E-value=3.1 Score=36.36 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhh
Q 023421 78 AQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNE 124 (282)
Q Consensus 78 ~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp 124 (282)
+++|+.+||++|+.++..+|--| ++.-.+|-.||+.+.=.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHH
Confidence 47899999999999999999443 24557799999965433
No 76
>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.
Probab=77.14 E-value=0.17 Score=35.11 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=25.3
Q ss_pred HHhhhccccccccccccchhHHhhhhcCCCCccccceeeeecCCCCceeehhhhhhHHhh
Q 023421 175 HWKNYNSKEEYSSFYRKAPVREVQEENPDGGYKIGYLIAWILGGRGGILLTLCLSFASWV 234 (282)
Q Consensus 175 ~~~~~~~~~~~~~~~~e~~leE~~ek~~~~g~k~g~~i~~~~GG~~G~~l~~c~~cs~w~ 234 (282)
|+..++|++. +..+++++++ +.+++.|..||+|+
T Consensus 17 ~~y~CRCG~~--f~i~e~~l~~------------------------~~~iv~C~sCSL~I 50 (55)
T PF05207_consen 17 YSYPCRCGGE--FEISEEDLEE------------------------GEVIVQCDSCSLWI 50 (55)
T ss_dssp EEEEETTSSE--EEEEHHHHHC------------------------T--EEEETTTTEEE
T ss_pred EEEcCCCCCE--EEEcchhccC------------------------cCEEEECCCCccEE
Confidence 5678899987 4667776666 16899999999997
No 77
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=74.80 E-value=12 Score=27.54 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=31.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 023421 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKT 113 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~ 113 (282)
++|--+++|++|.++..||+.|-++.++|..=-..+.....+.|..
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~ 47 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEA 47 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHH
Confidence 3566788999999999999999887777764333333333344443
No 78
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=73.75 E-value=7.8 Score=30.81 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCchH-----HHHHHHHHHHHHHHhhhh
Q 023421 79 QSATLADIKRAYRLLARKYHPDVSKDSR-----AVEVFKTIRCAYEVLSNE 124 (282)
Q Consensus 79 ~~a~~~~Ik~ayr~l~~~~HPDk~~~~~-----a~~~f~~i~~Ay~vLsdp 124 (282)
+..+..++|.+.|..-++.|||...... -++-++.++.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 4456788999999999999999765422 234466677666666543
No 79
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=58.45 E-value=4.8 Score=23.93 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=12.1
Q ss_pred CccchhhhHHHHHH
Q 023421 239 SSGVVVLVVVAVWI 252 (282)
Q Consensus 239 ~~~~~~~~~~~~~~ 252 (282)
.|+||.|.|+.||+
T Consensus 11 nftvvlitvilmwl 24 (31)
T PF05366_consen 11 NFTVVLITVILMWL 24 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 36799999999997
No 80
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=57.91 E-value=69 Score=23.72 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=31.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 023421 69 PDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKT 113 (282)
Q Consensus 69 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~ 113 (282)
+|--.+.|+.|.++.+||+.|=.+.++|..=-..+.....+.|..
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~ 47 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDR 47 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHH
Confidence 455567789999999999999988888875444443334445544
No 81
>TIGR03370 PEPCTERM_Roseo variant PEP-CTERM putative exosortase signal, Roseobacter type. A probable protein export sorting signal, PEP-CTERM, was described by Haft, et al. (PubMed:16930487). It is predicted to interact with a putative transpeptidase we designate exosortase. Most examples of this signal are recognized by model TIGR02595, but some unusual clades require different models. This model describes a variant with conserved motif VPLPA, rather than VPEP. This variant is found prominently in two members of the Rhodobacterales, namely Jannaschia sp. CCS1 and Roseobacter denitrificans OCh 114. One interesting member protein has a full-length duplication and therefore two copies of this putative sorting domain.
Probab=45.59 E-value=15 Score=21.50 Aligned_cols=12 Identities=58% Similarity=1.013 Sum_probs=10.0
Q ss_pred ccCChhHHHHHH
Q 023421 260 APLPQGALIALL 271 (282)
Q Consensus 260 ~~~~~~~~~~~~ 271 (282)
||||-++.|+|.
T Consensus 1 VPlPA~~~LLl~ 12 (26)
T TIGR03370 1 VPLPAGALLLLA 12 (26)
T ss_pred CCCcchHHHHHH
Confidence 799999888765
No 82
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.52 E-value=35 Score=27.67 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=38.0
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhh
Q 023421 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNE 124 (282)
Q Consensus 70 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp 124 (282)
.--.||+|++..+.++|-+.|-.|-..+.+.|.+.- ..--++-.|-|-|..+
T Consensus 60 Ea~qILnV~~~ln~eei~k~yehLFevNdkskGGSF---YLQSKVfRAkErld~E 111 (132)
T KOG3442|consen 60 EAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSF---YLQSKVFRAKERLDEE 111 (132)
T ss_pred HHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcce---eehHHHHHHHHHHHHH
Confidence 456799999999999999999999999988876642 1112345566655443
No 83
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=40.80 E-value=31 Score=20.37 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhCC
Q 023421 83 LADIKRAYRLLARKYHP 99 (282)
Q Consensus 83 ~~~Ik~ayr~l~~~~HP 99 (282)
.++.|.+-|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47889999999999993
No 84
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=37.12 E-value=19 Score=17.71 Aligned_cols=13 Identities=46% Similarity=0.746 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhh
Q 023421 110 VFKTIRCAYEVLS 122 (282)
Q Consensus 110 ~f~~i~~Ay~vLs 122 (282)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888887763
No 85
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=31.34 E-value=18 Score=22.82 Aligned_cols=13 Identities=46% Similarity=1.168 Sum_probs=8.0
Q ss_pred cchhhhHHHHHHc
Q 023421 241 GVVVLVVVAVWIG 253 (282)
Q Consensus 241 ~~~~~~~~~~~~~ 253 (282)
....+++|++|+|
T Consensus 28 al~vv~lvslwig 40 (40)
T PF13124_consen 28 ALLVVVLVSLWIG 40 (40)
T ss_pred HHHHHHHHHHHcC
Confidence 3344556778876
No 86
>COG2879 Uncharacterized small protein [Function unknown]
Probab=30.80 E-value=86 Score=22.38 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHH
Q 023421 89 AYRLLARKYHPDVSKDSRAVEVFKT 113 (282)
Q Consensus 89 ayr~l~~~~HPDk~~~~~a~~~f~~ 113 (282)
.|-+-.++.|||+.+-. -+|-|++
T Consensus 27 nYVehmr~~hPd~p~mT-~~EFfre 50 (65)
T COG2879 27 NYVEHMRKKHPDKPPMT-YEEFFRE 50 (65)
T ss_pred HHHHHHHHhCcCCCccc-HHHHHHH
Confidence 47788899999997753 3344443
No 87
>COG4420 Predicted membrane protein [Function unknown]
Probab=28.85 E-value=49 Score=28.77 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=25.9
Q ss_pred hhhCccCccchhhhHHHHHHcccc---cccccCChhHHHHHHHHHh
Q 023421 233 WVCGKTSSGVVVLVVVAVWIGSNL---ARCAPLPQGALIALLYMSL 275 (282)
Q Consensus 233 w~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 275 (282)
.+.|...|-+.++++|.+|++.|+ .+-+.-|.+-+++=+..|+
T Consensus 53 ~f~Gsw~fil~~~~~ll~Wi~lNl~~~~~~~wDpyPFi~LnLllS~ 98 (191)
T COG4420 53 RFGGSWAFILTFTLLLLLWIVLNLFLVPGLAWDPYPFILLNLLLST 98 (191)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHhhhcCCcCCCccHHHHHHHHHH
Confidence 344555566778888888998884 3334445555554444443
No 88
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=28.63 E-value=1.6e+02 Score=19.58 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 023421 87 KRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRA 133 (282)
Q Consensus 87 k~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 133 (282)
.+.+++..+.-|||.. ..+..+.|.+.+..|+|.++..-.|..
T Consensus 12 ~~~~~~~~~~~~~~~~----~~~i~~~~~~~W~~l~~~~k~~y~~~a 54 (66)
T cd00084 12 SQEHRAEVKAENPGLS----VGEISKILGEMWKSLSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHHHCcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5667777888898832 456788899999999987776666653
No 89
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=25.66 E-value=46 Score=30.32 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhh
Q 023421 108 VEVFKTIRCAYEVLS 122 (282)
Q Consensus 108 ~~~f~~i~~Ay~vLs 122 (282)
..+.++||||+|+|+
T Consensus 127 RRRLkKVNEAFE~LK 141 (284)
T KOG3960|consen 127 RRRLKKVNEAFETLK 141 (284)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467999999999986
No 90
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=24.22 E-value=2.1e+02 Score=19.17 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 023421 89 AYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRA 133 (282)
Q Consensus 89 ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 133 (282)
..|...+.-||+. ...+..+.|.+.+..|++.++....+..
T Consensus 14 ~~r~~~~~~~p~~----~~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 14 EQRPKLKKENPDA----SVTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3566667778883 2457788999999999987776666553
No 91
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.09 E-value=58 Score=25.70 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=14.8
Q ss_pred CccchhhhHHHHHHcccc
Q 023421 239 SSGVVVLVVVAVWIGSNL 256 (282)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ 256 (282)
.|-++..+++++|++.|+
T Consensus 5 ~Fi~~~~~~~~~Wi~~N~ 22 (108)
T PF06210_consen 5 TFIIIFTVFLAVWILLNI 22 (108)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456778889999999995
No 92
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=23.10 E-value=2.2e+02 Score=18.47 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCCCCCchHHHHHHHHHHH--HHHHh--hhhhhhHhhh
Q 023421 85 DIKRAYRLLARKYHPDVSKDSRAVEVFKTIRC--AYEVL--SNEVTRIKYD 131 (282)
Q Consensus 85 ~Ik~ayr~l~~~~HPDk~~~~~a~~~f~~i~~--Ay~vL--sdp~~R~~YD 131 (282)
+.+.+|++|...+. ..+...-.+....|.. .|..| ++..++..|+
T Consensus 1 ~a~~~F~~lL~e~~--i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ 49 (51)
T PF01846_consen 1 KAREAFKELLKEHK--ITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFE 49 (51)
T ss_dssp HHHHHHHHHHHHTT--S-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC--CCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHH
Confidence 46788998888766 3333222222222221 55555 4445555554
No 93
>KOG4826 consensus C-8,7 sterol isomerase [Lipid transport and metabolism]
Probab=22.90 E-value=53 Score=29.12 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=35.3
Q ss_pred HHhhhCccCccchhhhHHHHHHcccccccccCChhHHHHHHHH
Q 023421 231 ASWVCGKTSSGVVVLVVVAVWIGSNLARCAPLPQGALIALLYM 273 (282)
Q Consensus 231 s~w~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (282)
..|.-+...+++..++++.+|.-+.-++-++||.+++.-|.|-
T Consensus 24 ~~~~~~sil~~~~~l~v~~~~lls~~~~~~~L~~w~l~Wl~vs 66 (229)
T KOG4826|consen 24 PTWHILSILLSVTLLLVVTTWLLSGRAAVVVLDKWVLCWLAVS 66 (229)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHhh
Confidence 4566666777888899999999999999999999998766654
No 94
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=21.82 E-value=2e+02 Score=20.16 Aligned_cols=43 Identities=21% Similarity=0.179 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 023421 87 KRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRA 133 (282)
Q Consensus 87 k~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 133 (282)
.+..|...+.-||+.. ..+..+.|.+.+..|++.++..-+|..
T Consensus 13 ~~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~~a 55 (72)
T cd01388 13 SKRHRRKVLQEYPLKE----NRAISKILGDRWKALSNEEKQPYYEEA 55 (72)
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456777778899852 346778899999999998877666653
No 95
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=20.74 E-value=31 Score=24.60 Aligned_cols=30 Identities=23% Similarity=0.550 Sum_probs=21.3
Q ss_pred CCCchhhcCCCCCCCHHHH-HHHHHHHHHHhCCCC
Q 023421 68 EPDHYKVLGVAQSATLADI-KRAYRLLARKYHPDV 101 (282)
Q Consensus 68 ~~d~Y~iLgv~~~a~~~~I-k~ayr~l~~~~HPDk 101 (282)
..+++++||.++ +++ +..........|||-
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 367899999954 666 666777888999983
No 96
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=20.43 E-value=2.9e+02 Score=18.71 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhhhhhhhHhhhh
Q 023421 87 KRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 132 (282)
Q Consensus 87 k~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 132 (282)
.+.++...+..||+.. ..+..+.|.+.|.-|++.++..-.+.
T Consensus 12 ~~~~~~~~k~~~p~~~----~~~i~~~~~~~W~~l~~~eK~~y~~~ 53 (69)
T PF00505_consen 12 CKEKRAKLKEENPDLS----NKEISKILAQMWKNLSEEEKAPYKEE 53 (69)
T ss_dssp HHHHHHHHHHHSTTST----HHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc----cccchhhHHHHHhcCCHHHHHHHHHH
Confidence 4556667777899865 45677889999999987766655554
Done!