Query 023422
Match_columns 282
No_of_seqs 107 out of 1402
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:54:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07396 MPP_Nbla03831 Homo sap 100.0 1.1E-30 2.4E-35 223.7 26.0 247 3-267 20-266 (267)
2 cd07395 MPP_CSTP1 Homo sapiens 100.0 3E-27 6.4E-32 202.2 22.4 223 4-271 28-261 (262)
3 PRK11148 cyclic 3',5'-adenosin 99.9 1.1E-25 2.5E-30 193.6 22.4 202 8-264 38-252 (275)
4 cd07402 MPP_GpdQ Enterobacter 99.9 7.7E-26 1.7E-30 191.0 19.8 204 6-263 21-238 (240)
5 cd07378 MPP_ACP5 Homo sapiens 99.9 9.5E-22 2.1E-26 169.5 20.2 226 10-272 18-275 (277)
6 cd00839 MPP_PAPs purple acid p 99.9 6.8E-22 1.5E-26 171.9 18.4 203 24-272 33-281 (294)
7 cd00842 MPP_ASMase acid sphing 99.9 8.8E-22 1.9E-26 171.3 16.9 217 4-256 46-296 (296)
8 cd07399 MPP_YvnB Bacillus subt 99.9 1.1E-20 2.3E-25 156.6 18.5 172 11-270 23-211 (214)
9 cd07401 MPP_TMEM62_N Homo sapi 99.9 2.2E-20 4.8E-25 158.8 20.2 194 13-248 23-232 (256)
10 cd08163 MPP_Cdc1 Saccharomyces 99.9 2.3E-20 5E-25 158.1 15.6 189 11-248 32-255 (257)
11 TIGR03729 acc_ester putative p 99.8 1E-19 2.2E-24 153.5 15.4 204 11-242 20-235 (239)
12 PLN02533 probable purple acid 99.8 1.6E-19 3.5E-24 163.5 16.9 181 14-246 156-359 (427)
13 TIGR03767 P_acnes_RR metalloph 99.8 1.6E-18 3.5E-23 154.8 22.3 137 90-271 290-443 (496)
14 cd07393 MPP_DR1119 Deinococcus 99.8 5.3E-19 1.1E-23 148.3 17.4 197 9-247 25-228 (232)
15 PTZ00422 glideosome-associated 99.8 1.8E-18 3.9E-23 152.3 21.4 213 11-271 44-315 (394)
16 COG1409 Icc Predicted phosphoh 99.8 5.2E-17 1.1E-21 141.0 21.6 171 7-228 17-193 (301)
17 cd07392 MPP_PAE1087 Pyrobaculu 99.8 1E-17 2.3E-22 135.9 15.3 168 18-242 18-187 (188)
18 cd07388 MPP_Tt1561 Thermus the 99.8 1.6E-16 3.4E-21 131.4 19.5 193 8-266 16-222 (224)
19 cd07383 MPP_Dcr2 Saccharomyces 99.7 4.8E-17 1E-21 133.4 15.3 141 19-246 37-193 (199)
20 TIGR03768 RPA4764 metallophosp 99.7 7.2E-15 1.6E-19 130.4 21.0 112 157-271 326-462 (492)
21 KOG1378 Purple acid phosphatas 99.7 3.3E-15 7.2E-20 132.1 16.9 159 24-230 174-346 (452)
22 KOG3770 Acid sphingomyelinase 99.6 1.4E-15 3E-20 137.7 12.2 213 10-261 195-443 (577)
23 cd00840 MPP_Mre11_N Mre11 nucl 99.6 3.3E-14 7.1E-19 118.5 15.6 65 5-73 23-90 (223)
24 COG2129 Predicted phosphoester 99.6 4E-13 8.6E-18 108.5 20.4 204 8-271 15-225 (226)
25 cd07400 MPP_YydB Bacillus subt 99.6 2.7E-14 5.9E-19 111.0 12.6 54 12-71 24-80 (144)
26 KOG1432 Predicted DNA repair e 99.6 8.4E-14 1.8E-18 118.0 14.6 244 13-271 89-359 (379)
27 cd07404 MPP_MS158 Microscilla 99.6 2.1E-14 4.4E-19 114.4 10.1 59 180-240 97-160 (166)
28 KOG2679 Purple (tartrate-resis 99.6 1.7E-13 3.6E-18 112.6 15.2 211 24-270 75-315 (336)
29 PF00149 Metallophos: Calcineu 99.5 1.8E-14 3.8E-19 114.2 8.6 50 177-227 147-199 (200)
30 PF14582 Metallophos_3: Metall 99.5 2.8E-13 6.1E-18 109.1 14.8 207 6-268 15-253 (255)
31 PRK11340 phosphodiesterase Yae 99.5 1E-13 2.2E-18 118.9 11.1 60 9-72 66-125 (271)
32 cd07385 MPP_YkuE_C Bacillus su 99.5 9.2E-13 2E-17 109.9 14.1 61 9-76 18-80 (223)
33 COG1768 Predicted phosphohydro 99.4 4.5E-12 9.8E-17 98.1 12.9 182 13-243 31-218 (230)
34 TIGR00583 mre11 DNA repair pro 99.4 1.9E-11 4.1E-16 109.6 18.9 93 179-280 200-300 (405)
35 PF12850 Metallophos_2: Calcin 99.4 7E-13 1.5E-17 104.1 8.6 74 180-262 81-155 (156)
36 cd07397 MPP_DevT Myxococcus xa 99.4 1.6E-11 3.5E-16 101.9 16.3 46 17-73 19-64 (238)
37 TIGR01854 lipid_A_lpxH UDP-2,3 99.4 8.2E-12 1.8E-16 104.8 14.7 192 12-246 17-218 (231)
38 PRK10966 exonuclease subunit S 99.4 2.3E-11 4.9E-16 109.8 18.5 61 12-73 28-88 (407)
39 PHA02546 47 endonuclease subun 99.4 3.2E-11 6.9E-16 106.8 18.0 64 8-72 24-89 (340)
40 PRK05340 UDP-2,3-diacylglucosa 99.4 5.6E-11 1.2E-15 100.4 18.0 199 24-270 32-238 (241)
41 TIGR00040 yfcE phosphoesterase 99.4 5.2E-11 1.1E-15 94.0 15.6 50 216-266 106-156 (158)
42 cd00841 MPP_YfcE Escherichia c 99.3 8.9E-11 1.9E-15 92.3 15.1 56 210-268 97-153 (155)
43 TIGR00619 sbcd exonuclease Sbc 99.3 1.8E-11 3.9E-16 103.9 11.7 63 9-72 25-88 (253)
44 cd07379 MPP_239FB Homo sapiens 99.3 4.4E-11 9.5E-16 91.9 12.3 43 24-71 19-62 (135)
45 PRK09453 phosphodiesterase; Pr 99.3 1.6E-10 3.5E-15 93.3 15.9 62 9-71 13-75 (182)
46 COG0420 SbcD DNA repair exonuc 99.3 9.5E-11 2.1E-15 105.9 15.3 66 6-72 23-88 (390)
47 cd07394 MPP_Vps29 Homo sapiens 99.3 4.4E-10 9.5E-15 90.3 16.8 64 206-271 97-165 (178)
48 cd07384 MPP_Cdc1_like Saccharo 99.2 2E-10 4.3E-15 91.7 12.7 48 183-248 119-169 (171)
49 cd08165 MPP_MPPE1 human MPPE1 99.2 1.5E-10 3.3E-15 91.0 11.8 48 183-248 107-154 (156)
50 cd08166 MPP_Cdc1_like_1 unchar 99.2 5.2E-10 1.1E-14 90.1 14.0 56 13-71 32-92 (195)
51 COG2908 Uncharacterized protei 99.2 1E-10 2.2E-15 95.6 7.9 54 205-266 177-230 (237)
52 COG0622 Predicted phosphoester 99.1 1E-08 2.2E-13 81.3 14.8 58 216-274 109-167 (172)
53 cd07403 MPP_TTHA0053 Thermus t 99.0 2.8E-09 6E-14 81.1 10.8 40 202-242 78-121 (129)
54 cd08164 MPP_Ted1 Saccharomyces 99.0 1.3E-09 2.9E-14 87.6 8.5 57 12-71 32-110 (193)
55 COG1408 Predicted phosphohydro 99.0 1.8E-09 3.9E-14 92.7 9.4 58 11-74 61-120 (284)
56 cd00838 MPP_superfamily metall 99.0 4.8E-09 1E-13 79.0 9.8 47 20-70 23-69 (131)
57 cd07410 MPP_CpdB_N Escherichia 99.0 1.1E-07 2.4E-12 81.9 18.8 64 7-72 27-95 (277)
58 cd07398 MPP_YbbF-LpxH Escheric 98.9 4.7E-09 1E-13 87.0 7.9 38 206-245 180-217 (217)
59 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.9 8.3E-08 1.8E-12 81.6 15.0 50 180-230 165-230 (262)
60 cd07390 MPP_AQ1575 Aquifex aeo 98.8 8.2E-08 1.8E-12 76.5 12.8 55 9-71 26-81 (168)
61 cd07406 MPP_CG11883_N Drosophi 98.8 4.9E-07 1.1E-11 77.1 16.8 71 8-83 22-93 (257)
62 cd00845 MPP_UshA_N_like Escher 98.8 4.7E-07 1E-11 76.9 16.5 62 7-72 20-82 (252)
63 PRK04036 DNA polymerase II sma 98.7 8.3E-08 1.8E-12 89.2 11.0 32 216-248 440-471 (504)
64 cd07424 MPP_PrpA_PrpB PrpA and 98.7 4.7E-08 1E-12 80.6 7.5 54 9-71 13-66 (207)
65 KOG3662 Cell division control 98.6 1.9E-07 4E-12 82.7 9.8 92 11-111 80-182 (410)
66 PHA02239 putative protein phos 98.6 3.7E-08 7.9E-13 82.5 5.2 59 9-71 13-72 (235)
67 cd07386 MPP_DNA_pol_II_small_a 98.6 5.4E-07 1.2E-11 76.2 11.8 63 11-73 18-95 (243)
68 cd07382 MPP_DR1281 Deinococcus 98.6 1.1E-05 2.4E-10 68.2 19.5 175 8-248 13-200 (255)
69 PRK11439 pphA serine/threonine 98.6 6.6E-07 1.4E-11 74.4 11.3 55 8-71 28-82 (218)
70 cd07411 MPP_SoxB_N Thermus the 98.6 8.5E-06 1.8E-10 69.8 18.3 61 8-72 34-95 (264)
71 cd07408 MPP_SA0022_N Staphyloc 98.6 1E-05 2.2E-10 69.0 18.2 70 8-82 22-91 (257)
72 cd07421 MPP_Rhilphs Rhilph pho 98.5 5.5E-07 1.2E-11 76.8 9.7 61 8-71 13-79 (304)
73 cd07412 MPP_YhcR_N Bacillus su 98.5 1.3E-05 2.7E-10 69.6 18.2 63 8-72 26-88 (288)
74 cd07423 MPP_PrpE Bacillus subt 98.5 7.3E-07 1.6E-11 74.9 10.0 58 9-71 13-79 (234)
75 PRK09968 serine/threonine-spec 98.5 1.7E-06 3.7E-11 71.8 11.3 55 8-71 26-80 (218)
76 cd07409 MPP_CD73_N CD73 ecto-5 98.5 8.3E-06 1.8E-10 70.5 15.4 61 8-72 33-94 (281)
77 PRK09419 bifunctional 2',3'-cy 98.4 1.7E-05 3.7E-10 81.1 17.9 61 8-72 675-736 (1163)
78 cd07391 MPP_PF1019 Pyrococcus 98.3 1.3E-06 2.9E-11 69.7 6.6 59 10-71 28-87 (172)
79 cd07405 MPP_UshA_N Escherichia 98.3 0.00014 3.1E-09 62.9 19.4 62 8-72 22-87 (285)
80 KOG2310 DNA repair exonuclease 98.2 3.8E-05 8.3E-10 69.6 13.9 93 178-279 209-309 (646)
81 TIGR00282 metallophosphoestera 98.2 0.00029 6.2E-09 60.0 18.0 178 9-247 15-202 (266)
82 COG4186 Predicted phosphoester 98.2 8.6E-06 1.9E-10 62.1 7.4 54 12-72 32-86 (186)
83 PRK09558 ushA bifunctional UDP 98.1 0.00026 5.6E-09 67.1 18.7 62 8-72 56-121 (551)
84 cd07407 MPP_YHR202W_N Saccharo 98.1 0.00026 5.6E-09 61.1 16.9 61 167-237 178-240 (282)
85 PF09423 PhoD: PhoD-like phosp 98.1 0.00012 2.6E-09 67.7 14.7 72 158-232 296-381 (453)
86 TIGR00024 SbcD_rel_arch putati 98.1 1.1E-05 2.5E-10 67.1 7.0 57 10-71 45-101 (225)
87 PRK09418 bifunctional 2',3'-cy 98.0 0.0004 8.6E-09 67.7 17.8 74 8-83 67-152 (780)
88 COG1311 HYS2 Archaeal DNA poly 98.0 1.8E-05 3.9E-10 71.2 7.3 49 24-72 262-321 (481)
89 COG0737 UshA 5'-nucleotidase/2 98.0 0.00025 5.4E-09 66.7 15.1 64 8-73 53-116 (517)
90 TIGR01390 CycNucDiestase 2',3' 97.9 0.00043 9.4E-09 66.3 15.9 74 8-83 30-109 (626)
91 PRK09419 bifunctional 2',3'-cy 97.9 0.00053 1.1E-08 70.4 17.3 73 8-83 69-149 (1163)
92 PRK11907 bifunctional 2',3'-cy 97.9 0.0011 2.5E-08 64.8 18.6 74 8-83 143-223 (814)
93 cd07387 MPP_PolD2_C PolD2 (DNA 97.9 0.0002 4.4E-09 60.6 11.5 50 24-73 42-108 (257)
94 cd07380 MPP_CWF19_N Schizosacc 97.9 0.00011 2.3E-09 57.2 8.8 58 9-70 10-68 (150)
95 TIGR01530 nadN NAD pyrophospha 97.9 0.00054 1.2E-08 64.8 15.1 62 8-72 33-94 (550)
96 PRK09420 cpdB bifunctional 2', 97.8 0.00079 1.7E-08 64.8 16.0 74 8-83 53-132 (649)
97 cd07425 MPP_Shelphs Shewanella 97.8 3.9E-05 8.6E-10 63.2 6.0 60 9-71 10-79 (208)
98 cd08162 MPP_PhoA_N Synechococc 97.7 0.0012 2.6E-08 57.8 13.5 64 8-72 18-91 (313)
99 cd07422 MPP_ApaH Escherichia c 97.7 6.6E-05 1.4E-09 63.7 5.2 57 8-71 10-66 (257)
100 PRK00166 apaH diadenosine tetr 97.6 7.8E-05 1.7E-09 64.0 5.3 56 9-71 13-68 (275)
101 cd00144 MPP_PPP_family phospho 97.5 0.00022 4.9E-09 59.3 5.9 58 9-71 10-67 (225)
102 KOG2863 RNA lariat debranching 97.5 0.00061 1.3E-08 59.1 8.4 63 9-71 13-87 (456)
103 cd07413 MPP_PA3087 Pseudomonas 97.5 0.00031 6.6E-09 58.5 6.2 58 9-71 11-75 (222)
104 PRK13625 bis(5'-nucleosyl)-tet 97.3 0.00054 1.2E-08 57.9 6.0 58 9-71 13-78 (245)
105 TIGR00668 apaH bis(5'-nucleosy 97.2 0.00042 9.2E-09 59.2 4.8 57 8-71 12-68 (279)
106 COG1407 Predicted ICC-like pho 97.2 0.0016 3.4E-08 54.0 7.1 60 10-72 49-110 (235)
107 KOG3947 Phosphoesterases [Gene 97.1 0.007 1.5E-07 50.8 10.1 44 24-72 82-126 (305)
108 COG5555 Cytolysin, a secreted 97.0 0.0019 4.1E-08 54.4 6.0 92 165-262 255-363 (392)
109 smart00854 PGA_cap Bacterial c 96.9 0.028 6.1E-07 47.3 12.7 67 166-237 160-226 (239)
110 cd07381 MPP_CapA CapA and rela 96.8 0.043 9.4E-07 46.1 13.2 68 165-237 161-228 (239)
111 COG3540 PhoD Phosphodiesterase 96.7 0.015 3.2E-07 52.7 9.5 70 158-230 335-420 (522)
112 smart00156 PP2Ac Protein phosp 96.4 0.011 2.4E-07 50.8 6.7 60 9-72 40-99 (271)
113 PF13277 YmdB: YmdB-like prote 96.3 0.25 5.5E-06 41.5 14.3 173 9-247 12-197 (253)
114 cd07420 MPP_RdgC Drosophila me 96.3 0.011 2.4E-07 51.8 6.5 61 9-72 63-123 (321)
115 cd07416 MPP_PP2B PP2B, metallo 96.2 0.015 3.2E-07 50.8 6.8 59 9-71 55-113 (305)
116 KOG3325 Membrane coat complex 96.2 0.016 3.4E-07 44.2 5.8 66 202-268 93-164 (183)
117 KOG4419 5' nucleotidase [Nucle 96.1 0.071 1.5E-06 49.6 10.8 60 164-232 213-273 (602)
118 cd07415 MPP_PP2A_PP4_PP6 PP2A, 95.8 0.023 5E-07 49.1 5.8 60 9-72 54-113 (285)
119 cd07414 MPP_PP1_PPKL PP1, PPKL 95.7 0.026 5.6E-07 49.0 6.0 60 9-72 62-121 (293)
120 PTZ00480 serine/threonine-prot 95.5 0.032 6.8E-07 48.9 5.8 60 9-72 71-130 (320)
121 cd07418 MPP_PP7 PP7, metalloph 95.5 0.042 9.1E-07 49.2 6.5 60 10-72 79-138 (377)
122 PTZ00239 serine/threonine prot 95.5 0.035 7.5E-07 48.4 5.9 60 9-72 55-114 (303)
123 cd07417 MPP_PP5_C PP5, C-termi 95.5 0.031 6.6E-07 49.0 5.6 59 10-71 73-131 (316)
124 PTZ00244 serine/threonine-prot 95.3 0.037 8E-07 48.0 5.5 60 9-72 64-123 (294)
125 cd07389 MPP_PhoD Bacillus subt 95.2 0.58 1.3E-05 38.8 12.3 49 24-72 29-102 (228)
126 cd07419 MPP_Bsu1_C Arabidopsis 95.2 0.06 1.3E-06 47.2 6.5 42 27-71 85-126 (311)
127 PF09587 PGA_cap: Bacterial ca 94.9 0.4 8.7E-06 40.6 10.8 71 162-237 167-237 (250)
128 PF04042 DNA_pol_E_B: DNA poly 94.6 0.021 4.6E-07 46.9 2.1 65 8-73 15-92 (209)
129 COG1692 Calcineurin-like phosp 93.1 4.6 0.0001 33.8 13.9 171 10-247 16-201 (266)
130 KOG0373 Serine/threonine speci 88.9 0.63 1.4E-05 38.1 4.0 42 28-72 76-117 (306)
131 KOG0372 Serine/threonine speci 87.9 0.69 1.5E-05 38.6 3.7 42 28-72 73-114 (303)
132 PF06874 FBPase_2: Firmicute f 84.7 1.2 2.5E-05 42.3 3.9 43 20-71 181-223 (640)
133 KOG2476 Uncharacterized conser 84.3 28 0.0006 32.1 12.1 52 15-70 24-76 (528)
134 KOG0371 Serine/threonine prote 84.2 2.3 5E-05 35.8 5.0 58 11-71 71-130 (319)
135 KOG0374 Serine/threonine speci 79.4 1.1 2.4E-05 39.6 1.7 46 26-74 88-133 (331)
136 PRK13600 putative ribosomal pr 79.1 9.4 0.0002 26.4 5.8 46 12-67 18-63 (84)
137 TIGR01769 GGGP geranylgeranylg 76.1 14 0.0003 30.3 7.0 54 10-71 11-65 (205)
138 TIGR01768 GGGP-family geranylg 72.7 15 0.00032 30.6 6.5 52 12-71 16-67 (223)
139 KOG0375 Serine-threonine phosp 72.2 3.6 7.8E-05 36.4 2.8 42 28-72 118-159 (517)
140 COG2949 SanA Uncharacterized m 71.4 8.9 0.00019 31.3 4.7 50 2-61 75-124 (235)
141 PRK04169 geranylgeranylglycery 67.2 21 0.00046 29.8 6.4 47 17-71 26-72 (232)
142 PHA03008 hypothetical protein; 67.0 11 0.00023 30.5 4.3 43 181-228 162-204 (234)
143 PRK01018 50S ribosomal protein 65.9 29 0.00064 24.7 6.1 55 13-84 22-76 (99)
144 COG3855 Fbp Uncharacterized pr 64.9 11 0.00023 34.7 4.3 40 24-71 190-229 (648)
145 PRK13602 putative ribosomal pr 62.3 36 0.00079 23.3 5.8 49 13-71 17-65 (82)
146 PF10922 DUF2745: Protein of u 61.9 11 0.00025 25.7 3.0 33 1-36 1-33 (85)
147 COG1646 Predicted phosphate-bi 61.2 36 0.00078 28.4 6.4 52 12-71 30-82 (240)
148 cd02067 B12-binding B12 bindin 57.8 55 0.0012 23.7 6.6 52 12-71 39-92 (119)
149 PTZ00235 DNA polymerase epsilo 57.6 47 0.001 28.8 6.8 67 7-73 42-123 (291)
150 PF02875 Mur_ligase_C: Mur lig 57.5 27 0.00059 24.1 4.7 61 5-68 20-81 (91)
151 PHA00450 host dGTPase inhibito 54.8 18 0.00039 24.6 3.0 32 1-35 1-32 (85)
152 TIGR02707 butyr_kinase butyrat 53.6 49 0.0011 29.6 6.6 40 24-71 293-332 (351)
153 PRK13601 putative L7Ae-like ri 53.5 59 0.0013 22.3 5.6 42 13-64 14-55 (82)
154 COG1358 RPL8A Ribosomal protei 53.0 67 0.0015 23.7 6.2 50 12-70 32-81 (116)
155 PRK06683 hypothetical protein; 52.4 64 0.0014 22.1 5.7 44 13-66 17-60 (82)
156 KOG0377 Protein serine/threoni 52.3 10 0.00022 34.6 2.0 40 29-71 197-236 (631)
157 COG2875 CobM Precorrin-4 methy 51.0 62 0.0013 27.1 6.2 53 7-67 59-111 (254)
158 cd07425 MPP_Shelphs Shewanella 51.0 11 0.00024 30.9 2.0 66 162-231 112-182 (208)
159 PF01248 Ribosomal_L7Ae: Ribos 49.3 57 0.0012 22.7 5.3 45 13-66 21-65 (95)
160 cd02071 MM_CoA_mut_B12_BD meth 48.3 84 0.0018 23.1 6.3 49 12-68 39-89 (122)
161 PF13258 DUF4049: Domain of un 48.2 27 0.00058 29.2 3.7 15 58-72 126-140 (318)
162 cd00886 MogA_MoaB MogA_MoaB fa 47.3 37 0.0008 26.2 4.4 44 6-51 43-86 (152)
163 TIGR03677 rpl7ae 50S ribosomal 46.9 51 0.0011 24.3 4.8 45 13-66 32-76 (117)
164 TIGR02667 moaB_proteo molybden 46.3 1.1E+02 0.0024 23.9 7.0 32 6-37 45-76 (163)
165 PTZ00106 60S ribosomal protein 46.1 86 0.0019 22.8 5.8 55 14-85 32-86 (108)
166 cd07014 S49_SppA Signal peptid 45.0 83 0.0018 24.8 6.2 57 7-66 22-78 (177)
167 PF02350 Epimerase_2: UDP-N-ac 45.0 51 0.0011 29.4 5.4 40 17-68 61-100 (346)
168 PF00072 Response_reg: Respons 44.3 1E+02 0.0022 21.4 6.1 51 12-70 32-82 (112)
169 COG0052 RpsB Ribosomal protein 43.4 62 0.0013 27.3 5.2 44 10-65 141-185 (252)
170 PRK10773 murF UDP-N-acetylmura 43.0 71 0.0015 29.5 6.3 59 5-67 334-392 (453)
171 PRK04175 rpl7ae 50S ribosomal 42.3 1.2E+02 0.0027 22.5 6.3 45 13-66 36-80 (122)
172 PRK07714 hypothetical protein; 41.5 1.2E+02 0.0026 21.5 5.9 55 13-85 24-78 (100)
173 PRK03011 butyrate kinase; Prov 40.5 1.1E+02 0.0024 27.4 6.9 40 24-71 295-334 (358)
174 cd00758 MoCF_BD MoCF_BD: molyb 39.9 55 0.0012 24.5 4.2 41 6-50 42-82 (133)
175 PRK10241 hydroxyacylglutathion 39.1 74 0.0016 26.8 5.3 44 28-72 122-168 (251)
176 TIGR01012 Sa_S2_E_A ribosomal 38.5 58 0.0013 26.5 4.3 36 24-71 108-157 (196)
177 TIGR00640 acid_CoA_mut_C methy 38.3 1.3E+02 0.0029 22.6 6.0 49 13-69 43-93 (132)
178 TIGR00706 SppA_dom signal pept 37.8 1.6E+02 0.0034 24.0 6.9 57 8-70 14-72 (207)
179 cd01141 TroA_d Periplasmic bin 37.6 69 0.0015 25.2 4.7 39 16-67 62-100 (186)
180 PTZ00222 60S ribosomal protein 37.6 1.3E+02 0.0028 25.6 6.2 49 14-71 139-187 (263)
181 PF14639 YqgF: Holliday-juncti 37.5 88 0.0019 24.2 5.0 53 11-71 51-108 (150)
182 COG3426 Butyrate kinase [Energ 36.2 40 0.00086 29.2 3.0 40 24-71 296-335 (358)
183 PF10087 DUF2325: Uncharacteri 35.6 1E+02 0.0022 21.6 4.8 35 24-66 48-82 (97)
184 PF02698 DUF218: DUF218 domain 35.4 47 0.001 25.3 3.3 48 24-71 1-49 (155)
185 COG0770 MurF UDP-N-acetylmuram 35.2 1E+02 0.0022 28.7 5.9 61 5-68 335-395 (451)
186 PRK10680 molybdopterin biosynt 35.0 71 0.0015 29.3 4.8 29 6-36 227-255 (411)
187 PRK12311 rpsB 30S ribosomal pr 34.7 99 0.0022 27.4 5.5 29 24-64 152-180 (326)
188 PRK14690 molybdopterin biosynt 34.7 65 0.0014 29.6 4.5 29 6-36 243-271 (419)
189 PLN02251 pyrophosphate-depende 34.1 1.2E+02 0.0027 29.1 6.3 57 7-72 174-234 (568)
190 PTZ00365 60S ribosomal protein 33.7 1.5E+02 0.0033 25.3 6.0 47 14-70 139-186 (266)
191 PRK11930 putative bifunctional 33.6 1E+02 0.0023 31.0 6.2 60 5-68 338-399 (822)
192 COG3910 Predicted ATPase [Gene 33.4 89 0.0019 25.6 4.5 33 159-192 158-191 (233)
193 TIGR01319 glmL_fam conserved h 33.4 1.1E+02 0.0024 28.4 5.7 51 13-71 110-162 (463)
194 COG2047 Uncharacterized protei 33.0 1.1E+02 0.0024 25.4 5.0 45 24-70 83-127 (258)
195 KOG3818 DNA polymerase epsilon 32.9 1.9E+02 0.004 26.8 6.8 39 210-248 466-504 (525)
196 PF01884 PcrB: PcrB family; I 32.7 1.3E+02 0.0029 25.1 5.6 49 13-71 22-71 (230)
197 PRK05583 ribosomal protein L7A 32.6 1.9E+02 0.0041 20.8 6.0 54 14-85 24-77 (104)
198 PRK14072 6-phosphofructokinase 32.4 1.1E+02 0.0024 28.1 5.6 56 8-72 88-147 (416)
199 KOG1344 Predicted histone deac 31.7 2.4E+02 0.0053 23.7 6.8 60 7-66 231-298 (324)
200 PRK14093 UDP-N-acetylmuramoyla 31.1 1.4E+02 0.003 27.9 6.2 60 5-67 346-408 (479)
201 TIGR03413 GSH_gloB hydroxyacyl 30.9 1.3E+02 0.0029 25.2 5.6 44 27-71 120-166 (248)
202 PRK10799 metal-binding protein 30.6 92 0.002 26.2 4.5 47 181-230 57-103 (247)
203 PF02421 FeoB_N: Ferrous iron 30.6 1.3E+02 0.0029 23.4 5.1 45 17-70 72-116 (156)
204 PRK06555 pyrophosphate--fructo 30.6 1.5E+02 0.0032 27.2 6.0 54 9-71 98-153 (403)
205 cd07018 S49_SppA_67K_type Sign 29.9 2.1E+02 0.0045 23.5 6.5 58 7-67 29-86 (222)
206 cd00394 Clp_protease_like Case 28.5 2.6E+02 0.0056 21.4 6.5 54 7-66 11-64 (161)
207 PRK03604 moaC bifunctional mol 27.7 1.7E+02 0.0037 25.7 5.7 42 6-50 198-239 (312)
208 PF13941 MutL: MutL protein 27.3 1.8E+02 0.004 27.1 6.1 50 13-70 114-165 (457)
209 PF07555 NAGidase: beta-N-acet 26.9 2.8E+02 0.006 24.3 6.9 67 115-188 8-78 (306)
210 TIGR03568 NeuC_NnaA UDP-N-acet 26.8 1.5E+02 0.0033 26.5 5.5 47 13-71 83-130 (365)
211 cd00363 PFK Phosphofructokinas 26.8 1.6E+02 0.0035 26.2 5.5 55 9-72 78-136 (338)
212 cd01149 HutB Hemin binding pro 26.6 1.3E+02 0.0028 24.6 4.8 38 16-66 51-88 (235)
213 PF07894 DUF1669: Protein of u 26.6 1.9E+02 0.004 25.1 5.6 49 11-67 134-182 (284)
214 PRK07283 hypothetical protein; 26.6 2.3E+02 0.0051 19.9 5.9 53 14-84 25-77 (98)
215 COG1105 FruK Fructose-1-phosph 26.5 2.9E+02 0.0063 24.3 6.9 50 9-63 113-163 (310)
216 cd01425 RPS2 Ribosomal protein 26.4 1.3E+02 0.0028 24.3 4.5 30 24-65 127-156 (193)
217 KOG1625 DNA polymerase alpha-p 26.3 2.4E+02 0.0052 26.9 6.5 64 7-71 356-430 (600)
218 TIGR02477 PFKA_PPi diphosphate 26.2 1.8E+02 0.0039 27.8 6.0 55 9-72 147-205 (539)
219 COG2843 PgsA Putative enzyme o 26.1 2.5E+02 0.0055 25.4 6.6 69 165-238 210-279 (372)
220 PRK10834 vancomycin high tempe 25.7 1.8E+02 0.0039 24.5 5.2 55 16-70 36-92 (239)
221 TIGR01143 murF UDP-N-acetylmur 25.6 2.2E+02 0.0049 25.8 6.5 24 44-67 308-331 (417)
222 TIGR00486 YbgI_SA1388 dinuclea 25.5 1.7E+02 0.0038 24.6 5.3 46 181-230 58-104 (249)
223 COG0488 Uup ATPase components 25.5 94 0.002 29.6 4.0 28 159-189 183-210 (530)
224 COG3562 KpsS Capsule polysacch 24.9 72 0.0016 28.3 2.8 34 2-35 59-92 (403)
225 PRK03202 6-phosphofructokinase 24.9 1.6E+02 0.0035 26.0 5.1 50 8-70 78-127 (320)
226 CHL00067 rps2 ribosomal protei 24.9 1.9E+02 0.0041 24.1 5.3 29 24-64 161-189 (230)
227 PLN03028 pyrophosphate--fructo 24.9 2E+02 0.0044 27.9 6.1 55 9-72 159-217 (610)
228 COG2382 Fes Enterochelin ester 24.5 99 0.0021 26.9 3.6 41 26-72 240-282 (299)
229 cd00765 Pyrophosphate_PFK Phos 24.3 2.2E+02 0.0047 27.3 6.1 56 8-72 151-210 (550)
230 cd02812 PcrB_like PcrB_like pr 24.2 2.6E+02 0.0056 23.2 5.9 40 24-71 25-66 (219)
231 TIGR03190 benz_CoA_bzdN benzoy 24.1 2.8E+02 0.0061 25.0 6.7 54 10-69 300-353 (377)
232 PF07905 PucR: Purine cataboli 24.1 2.1E+02 0.0045 21.0 4.9 49 10-68 59-108 (123)
233 TIGR01501 MthylAspMutase methy 24.0 3.2E+02 0.007 20.7 6.4 51 12-70 41-93 (134)
234 cd03522 MoeA_like MoeA_like. T 23.9 98 0.0021 27.2 3.6 30 6-36 202-231 (312)
235 TIGR02482 PFKA_ATP 6-phosphofr 23.5 2.2E+02 0.0048 24.9 5.7 51 9-71 77-127 (301)
236 cd01139 TroA_f Periplasmic bin 23.4 1.4E+02 0.003 26.2 4.6 42 16-66 84-125 (342)
237 cd00764 Eukaryotic_PFK Phospho 23.4 1.4E+02 0.003 29.9 4.8 56 10-71 465-520 (762)
238 COG2159 Predicted metal-depend 23.4 2.3E+02 0.005 24.5 5.8 56 168-226 146-201 (293)
239 cd06558 crotonase-like Crotona 23.2 3.7E+02 0.008 21.1 6.7 66 6-71 25-105 (195)
240 PRK07085 diphosphate--fructose 23.2 2.3E+02 0.0049 27.2 6.0 56 8-72 149-208 (555)
241 cd03027 GRX_DEP Glutaredoxin ( 22.8 2.2E+02 0.0048 18.3 5.3 45 15-69 17-61 (73)
242 PF03808 Glyco_tran_WecB: Glyc 22.7 3E+02 0.0065 21.6 5.9 50 6-62 55-104 (172)
243 PTZ00287 6-phosphofructokinase 22.6 2.2E+02 0.0049 30.5 6.2 55 9-72 914-972 (1419)
244 cd01143 YvrC Periplasmic bindi 22.5 1.7E+02 0.0037 22.9 4.6 37 16-66 53-89 (195)
245 PRK04020 rps2P 30S ribosomal p 22.1 1.7E+02 0.0038 23.9 4.4 14 50-63 128-141 (204)
246 PF01784 NIF3: NIF3 (NGG1p int 21.8 1.1E+02 0.0023 25.7 3.3 46 181-229 54-100 (241)
247 TIGR01011 rpsB_bact ribosomal 21.7 4.3E+02 0.0093 21.9 6.8 30 24-65 155-184 (225)
248 TIGR02483 PFK_mixed phosphofru 21.7 2.5E+02 0.0053 24.9 5.6 51 9-72 80-132 (324)
249 KOG3167 Box H/ACA snoRNP compo 21.6 1.6E+02 0.0035 22.4 3.8 46 16-70 68-113 (153)
250 PRK05299 rpsB 30S ribosomal pr 21.5 2.1E+02 0.0046 24.4 5.0 29 24-64 157-185 (258)
251 COG0381 WecB UDP-N-acetylgluco 21.4 3.2E+02 0.0069 24.8 6.2 16 20-36 89-104 (383)
252 TIGR03191 benz_CoA_bzdO benzoy 21.0 3.7E+02 0.0081 24.8 6.9 53 11-69 349-401 (430)
253 cd04502 SGNH_hydrolase_like_7 20.8 2.8E+02 0.0061 21.2 5.4 9 24-32 50-58 (171)
254 TIGR01166 cbiO cobalt transpor 20.6 2.3E+02 0.0049 22.4 4.9 31 159-189 157-187 (190)
255 COG1105 FruK Fructose-1-phosph 20.1 3.6E+02 0.0077 23.8 6.2 34 158-191 109-142 (310)
256 PTZ00333 triosephosphate isome 20.1 92 0.002 26.5 2.5 34 2-36 101-134 (255)
No 1
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=100.00 E-value=1.1e-30 Score=223.71 Aligned_cols=247 Identities=45% Similarity=0.815 Sum_probs=180.4
Q ss_pred chhhhHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhh
Q 023422 3 WYYRHSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPL 82 (282)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~ 82 (282)
+++..+.+.++++++.+++. +||+||++||++++.... ..+.++.+.+.+..+++|+++++||||........+..
T Consensus 20 ~~~~~~~~~l~~~i~~i~~~-~~d~vv~~GDlv~~~~~~--~~~~~~~~~~~l~~l~~p~~~v~GNHD~~~~~~~~~~~- 95 (267)
T cd07396 20 RYYRNSLEKLEEAVEEWNRE-SLDFVVQLGDIIDGDNAR--AEEALDAVLAILDRLKGPVHHVLGNHDLYNPSREYLLL- 95 (267)
T ss_pred chHHHhHHHHHHHHHHHHcC-CCCEEEECCCeecCCCch--HHHHHHHHHHHHHhcCCCEEEecCccccccccHhhhhc-
Confidence 55677889999999999988 899999999999743211 34778888888988889999999999986544322221
Q ss_pred hcCCCCCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCH
Q 023422 83 LKISSVDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGK 162 (282)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (282)
......+..||++. .+++++|.+|+......+.+........+...... ..++.+..+..+.|.+++
T Consensus 96 -~~~~~~~~~yysf~-~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~G~l~~ 162 (267)
T cd07396 96 -YTLLGLGAPYYSFS-PGGIRFIVLDGYDISALGRPEDTPKAENADDNSNL-----------GLYLSEPRFVDWNGGIGE 162 (267)
T ss_pred -ccccCCCCceEEEe-cCCcEEEEEeCCccccccCCCCChhhhhHHHhchh-----------hhhccCccceeccCcCCH
Confidence 11111345678886 78999999999665554443321110000000000 001112223345689999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEec
Q 023422 163 EQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVL 242 (282)
Q Consensus 163 ~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~ 242 (282)
+|++||++.|+++..++.++||++|+|+......+....++.+++.+++.++++|+++|+||+|....... +|+.+++.
T Consensus 163 ~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~-~gi~~~~~ 241 (267)
T cd07396 163 EQLQWLRNELQEADANGEKVIIFSHFPLHPESTSPHGLLWNHEEVLSILRAYGCVKACISGHDHEGGYAQR-HGIHFLTL 241 (267)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCCCccccccCHHHHHHHHHhCCCEEEEEcCCcCCCCcccc-CCeeEEEe
Confidence 99999999999886566789999999987654323345677889999999976799999999999987666 99999999
Q ss_pred cccccCCCCCCceEEEEEeCCeEEE
Q 023422 243 EAALECPPGTDAFGHIDAYDDRLSL 267 (282)
Q Consensus 243 ~~~~~~~~~~~~f~~v~~~~~~~~~ 267 (282)
++.+.+++..+.|++|.++.+++.+
T Consensus 242 ~a~~~~~~~~~~~~~~~~~~~~~~~ 266 (267)
T cd07396 242 EGMVETPPESNAFGVVIVYEDRLIL 266 (267)
T ss_pred chhhcCCCCCCceEEEEEeCCceee
Confidence 9999987788899999999998765
No 2
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.96 E-value=3e-27 Score=202.21 Aligned_cols=223 Identities=20% Similarity=0.232 Sum_probs=158.2
Q ss_pred hhhhHHHHHHHHHHHHhhc-CCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhc--CCCEEEecCCCCCCCCChh-hh
Q 023422 4 YYRHSLLVLQNAVQRWNNH-QKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKF--NGPAYHMIGNHCLYNLPRH-ML 79 (282)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~-~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~--~~pv~~v~GNHD~~~~~~~-~~ 79 (282)
.+.+.+..++++++.+++. ++||+||++||++++........++++.+.+.++.+ ++|+++++||||+...... .+
T Consensus 28 ~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~i~GNHD~~~~~~~~~~ 107 (262)
T cd07395 28 EWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSLLDPDIPLVCVCGNHDVGNTPTEESI 107 (262)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhhccCCCcEEEeCCCCCCCCCCChhHH
Confidence 3466778899999999875 489999999999985433222224556666667665 5799999999998543221 12
Q ss_pred hhhhcCCCCCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCC
Q 023422 80 LPLLKISSVDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGA 159 (282)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (282)
..+.... +..||++. .+++++|+||+.. +..+. ..+.
T Consensus 108 ~~f~~~~---g~~~y~~~-~~~~~~i~lds~~---~~~~~------------------------------------~~~~ 144 (262)
T cd07395 108 KDYRDVF---GDDYFSFW-VGGVFFIVLNSQL---FFDPS------------------------------------EVPE 144 (262)
T ss_pred HHHHHHh---CCcceEEE-ECCEEEEEecccc---ccCcc------------------------------------cccc
Confidence 2221111 23467776 7999999999832 11111 0035
Q ss_pred CCHHHHHHHHHHHHHHh-hCCCeEEEEEeeCCCCCCCC--C---cccccCHHHHHHHHHccCcEEEEEeCcccCCCcccc
Q 023422 160 VGKEQIKWLDAVLQDAT-KLNQKVVVCCHVPLDPGSAS--P---EALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSID 233 (282)
Q Consensus 160 ~~~~~~~wl~~~l~~~~-~~~~~~il~~H~p~~~~~~~--~---~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~ 233 (282)
++.+|++||++.|++++ .+.+++||++|+|+...... . ...+.+..++.+++.+++ |+++||||+|.......
T Consensus 145 ~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-V~~v~~GH~H~~~~~~~ 223 (262)
T cd07395 145 LAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAG-VKAVFSGHYHRNAGGRY 223 (262)
T ss_pred chHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcC-ceEEEECccccCCceEE
Confidence 67899999999999874 34568999999999754421 1 112334578999999995 99999999999988666
Q ss_pred CCCCeEEeccccccC-CCCCCceEEEEEeCCeEEEEecc
Q 023422 234 THGIHHRVLEAALEC-PPGTDAFGHIDAYDDRLSLVGTG 271 (282)
Q Consensus 234 ~~~i~~~~~~~~~~~-~~~~~~f~~v~~~~~~~~~~~~~ 271 (282)
+++.+++.++.+.. ....++|+++++++++++.+.|.
T Consensus 224 -~g~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 261 (262)
T cd07395 224 -GGLEMVVTSAIGAQLGNDKSGLRIVKVTEDKIVHEYYS 261 (262)
T ss_pred -CCEEEEEcCceecccCCCCCCcEEEEECCCceeeeeee
Confidence 88888887776654 35678999999999999877764
No 3
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.95 E-value=1.1e-25 Score=193.58 Aligned_cols=202 Identities=20% Similarity=0.309 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHhhc-CCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcCC
Q 023422 8 SLLVLQNAVQRWNNH-QKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKIS 86 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~-~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~~ 86 (282)
..+.++++++.+++. .+||+||++||+++ ....+.++.+.+.++++++|+++++||||... .+.+.+...
T Consensus 38 ~~~~l~~~i~~i~~~~~~~D~vvitGDl~~-----~~~~~~~~~~~~~l~~l~~Pv~~v~GNHD~~~----~~~~~~~~~ 108 (275)
T PRK11148 38 TWESYQAVLEAIRAQQHEFDLIVATGDLAQ-----DHSSEAYQHFAEGIAPLRKPCVWLPGNHDFQP----AMYSALQDA 108 (275)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEECCCCCC-----CCCHHHHHHHHHHHhhcCCcEEEeCCCCCChH----HHHHHHhhc
Confidence 457899999999875 36999999999998 45678888889999999999999999999842 122223211
Q ss_pred CCCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHHHHH
Q 023422 87 SVDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKEQIK 166 (282)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (282)
... ..++.+ ..+++++|+||+ ...+.+. |.++++|++
T Consensus 109 ~~~-~~~~~~-~~~~~~~i~Lds---~~~g~~~--------------------------------------G~l~~~ql~ 145 (275)
T PRK11148 109 GIS-PAKHVL-IGEHWQILLLDS---QVFGVPH--------------------------------------GELSEYQLE 145 (275)
T ss_pred CCC-ccceEE-ecCCEEEEEecC---CCCCCcC--------------------------------------CEeCHHHHH
Confidence 111 112223 256799999998 3334322 678899999
Q ss_pred HHHHHHHHHhhCCCeEEEEEeeCCCCCCC--CCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEeccc
Q 023422 167 WLDAVLQDATKLNQKVVVCCHVPLDPGSA--SPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEA 244 (282)
Q Consensus 167 wl~~~l~~~~~~~~~~il~~H~p~~~~~~--~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~ 244 (282)
||+++|++. ++++++|++||+|.+... .+...+++.+++.+++.++++|+++||||+|....... +|+.++..++
T Consensus 146 wL~~~L~~~--~~~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~~-~gi~~~~~ps 222 (275)
T PRK11148 146 WLERKLADA--PERHTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDLDW-NGRRLLATPS 222 (275)
T ss_pred HHHHHHhhC--CCCCeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhceE-CCEEEEEcCC
Confidence 999999987 445677778776654332 23445678899999999987799999999999865445 8998877777
Q ss_pred cccC-C---------CCCCceEEEEEeCCe
Q 023422 245 ALEC-P---------PGTDAFGHIDAYDDR 264 (282)
Q Consensus 245 ~~~~-~---------~~~~~f~~v~~~~~~ 264 (282)
.+.. + ...++|.++++.++.
T Consensus 223 ~~~q~~~~~~~~~~~~~~~g~~~~~l~~~g 252 (275)
T PRK11148 223 TCVQFKPHCTNFTLDTVAPGWRELELHADG 252 (275)
T ss_pred CcCCcCCCCCccccccCCCcEEEEEEcCCC
Confidence 6643 1 223589999997553
No 4
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.94 E-value=7.7e-26 Score=190.99 Aligned_cols=204 Identities=21% Similarity=0.258 Sum_probs=150.4
Q ss_pred hhHHHHHHHHHHHHhhc-CCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhc
Q 023422 6 RHSLLVLQNAVQRWNNH-QKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLK 84 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~-~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~ 84 (282)
......++++++.+++. ++||+||++||++++ ...+.++.+.+.++++++|+++++||||... .+...+.
T Consensus 21 ~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~-----~~~~~~~~~~~~l~~~~~p~~~v~GNHD~~~----~~~~~~~ 91 (240)
T cd07402 21 VDTAASLEAVLAHINALHPRPDLVLVTGDLTDD-----GSPESYERLRELLAALPIPVYLLPGNHDDRA----AMRAVFP 91 (240)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCEEEECccCCCC-----CCHHHHHHHHHHHhhcCCCEEEeCCCCCCHH----HHHHhhc
Confidence 34567889999999876 489999999999983 4566778888888888899999999999742 1222232
Q ss_pred CCC-CCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHH
Q 023422 85 ISS-VDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKE 163 (282)
Q Consensus 85 ~~~-~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (282)
... ..+..+|++. .++++||++|+.. .+.. .+.++++
T Consensus 92 ~~~~~~~~~~~~~~-~~~~~~i~lds~~---~~~~--------------------------------------~~~~~~~ 129 (240)
T cd07402 92 ELPPAPGFVQYVVD-LGGWRLILLDSSV---PGQH--------------------------------------GGELCAA 129 (240)
T ss_pred cccccccccceeEe-cCCEEEEEEeCCC---CCCc--------------------------------------CCEECHH
Confidence 110 1234457775 7899999999821 1111 1467899
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCC--CCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEe
Q 023422 164 QIKWLDAVLQDATKLNQKVVVCCHVPLDPGSA--SPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRV 241 (282)
Q Consensus 164 ~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~--~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~ 241 (282)
|++||++.|++.. +.++|+++|+||..... .+.....+.+++.+++.++++++++|+||+|....... +|+++++
T Consensus 130 ql~wL~~~L~~~~--~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~-~g~~~~~ 206 (240)
T cd07402 130 QLDWLEAALAEAP--DKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGSW-GGIPLLT 206 (240)
T ss_pred HHHHHHHHHHhCC--CCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeEE-CCEEEEE
Confidence 9999999999873 67899999999876532 22234456789999999995699999999999877666 9999989
Q ss_pred ccccccCC----------CCCCceEEEEEeCC
Q 023422 242 LEAALECP----------PGTDAFGHIDAYDD 263 (282)
Q Consensus 242 ~~~~~~~~----------~~~~~f~~v~~~~~ 263 (282)
.++.+... ....+|+...+..+
T Consensus 207 ~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (240)
T cd07402 207 APSTCHQFAPDLDDFALDALAPGYRALSLHED 238 (240)
T ss_pred cCcceeeecCCCCcccccccCCCCcEEEEecC
Confidence 88877651 12347777777544
No 5
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.89 E-value=9.5e-22 Score=169.54 Aligned_cols=226 Identities=19% Similarity=0.254 Sum_probs=140.0
Q ss_pred HHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcc-cH---HHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhh--hhh-
Q 023422 10 LVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQ-SL---EAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHML--LPL- 82 (282)
Q Consensus 10 ~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~-~~---~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~--~~~- 82 (282)
..+.+++..+.+..+||+||++||++.+...... .. +.+..++..+. +++|+++++||||......... ...
T Consensus 18 ~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~-~~~P~~~v~GNHD~~~~~~~~~~~~~~~ 96 (277)
T cd07378 18 KAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPS-LQVPWYLVLGNHDYSGNVSAQIDYTKRP 96 (277)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchh-hcCCeEEecCCcccCCCchheeehhccC
Confidence 3444455544443489999999999732211111 12 22333333232 5689999999999864222111 011
Q ss_pred -hcCCCCCCCcceEecCCC------CeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccc
Q 023422 83 -LKISSVDGRAYYDFSPTP------EYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLM 155 (282)
Q Consensus 83 -l~~~~~~~~~~~~~~~~~------~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (282)
.... .....||++. .+ +++||+|||.......... .. + ...
T Consensus 97 ~~~~~-~~~~~~y~~~-~~~~~~~~~~~~i~LDt~~~~~~~~~~-~~--------------------~---------~~~ 144 (277)
T cd07378 97 NSPRW-TMPAYYYRVS-FPFPSSDTTVEFIMIDTVPLCGNSDDI-AS--------------------P---------YGP 144 (277)
T ss_pred CCCCc-cCcchheEEE-eecCCCCCEEEEEEEeChhHcCccccc-cc--------------------c---------ccC
Confidence 1100 0124567776 33 7999999994321100000 00 0 001
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccC-
Q 023422 156 FNGAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDT- 234 (282)
Q Consensus 156 ~~~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~- 234 (282)
..+.+.++|++||++.|+++. ..++||++|+|+....... ......+.+.+++.+++ |+++|+||+|........
T Consensus 145 ~~~~~~~~Q~~wL~~~L~~~~--~~~~iv~~H~P~~~~~~~~-~~~~~~~~l~~l~~~~~-v~~vl~GH~H~~~~~~~~~ 220 (277)
T cd07378 145 PNGKLAEEQLAWLEKTLAAST--ADWKIVVGHHPIYSSGEHG-PTSCLVDRLLPLLKKYK-VDAYLSGHDHNLQHIKDDG 220 (277)
T ss_pred cchhhHHHHHHHHHHHHHhcC--CCeEEEEeCccceeCCCCC-CcHHHHHHHHHHHHHcC-CCEEEeCCcccceeeecCC
Confidence 125678999999999999874 3689999999987654211 11233567889999996 999999999998776551
Q ss_pred CCCeEEeccccccC-----------------CCCCCceEEEEEeCCeEEEEeccc
Q 023422 235 HGIHHRVLEAALEC-----------------PPGTDAFGHIDAYDDRLSLVGTGR 272 (282)
Q Consensus 235 ~~i~~~~~~~~~~~-----------------~~~~~~f~~v~~~~~~~~~~~~~~ 272 (282)
.++.+++.++.+.. .....+|..+++.++++.++.++.
T Consensus 221 ~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~~~l~~~~~~~ 275 (277)
T cd07378 221 SGTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTKEELTVRFYDA 275 (277)
T ss_pred CCcEEEEeCCCcccCCCCCccCcccccccccccCCCCEEEEEEecCEEEEEEECC
Confidence 38999988765542 013368999999999998887653
No 6
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.89 E-value=6.8e-22 Score=171.87 Aligned_cols=203 Identities=18% Similarity=0.202 Sum_probs=133.4
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhc--CCCEEEecCCCCCCCCChhhhhhh------hc--CCCCCCCcc
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKF--NGPAYHMIGNHCLYNLPRHMLLPL------LK--ISSVDGRAY 93 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~--~~pv~~v~GNHD~~~~~~~~~~~~------l~--~~~~~~~~~ 93 (282)
+||+||++||++.+... .....++.+.+.++.+ .+|+++++||||............ +. ........|
T Consensus 33 ~~d~vl~~GDl~~~~~~--~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (294)
T cd00839 33 NYDAILHVGDLAYADGY--NNGSRWDTFMRQIEPLASYVPYMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLW 110 (294)
T ss_pred CccEEEEcCchhhhcCC--ccchhHHHHHHHHHHHHhcCCcEEcCcccccccCCCCcccccccccccccCCCCCCCCCce
Confidence 89999999999953211 1124455555555543 479999999999854222111110 01 111234668
Q ss_pred eEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHHHHHHHHHHHH
Q 023422 94 YDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKEQIKWLDAVLQ 173 (282)
Q Consensus 94 ~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~ 173 (282)
|++. .++++||+||+..... .+.+..+|++||++.|+
T Consensus 111 Ysf~-~g~v~fi~Lds~~~~~------------------------------------------~~~~~~~q~~WL~~~L~ 147 (294)
T cd00839 111 YSFD-VGPVHFVSLSTEVDFY------------------------------------------GDGPGSPQYDWLEADLA 147 (294)
T ss_pred EEEe-eCCEEEEEEecccccc------------------------------------------cCCCCcHHHHHHHHHHH
Confidence 8996 8999999999832110 14567899999999999
Q ss_pred HHhhCC-CeEEEEEeeCCCCCCCCCc---ccccCHHHHHHHHHccCcEEEEEeCcccCCCcccc---------------C
Q 023422 174 DATKLN-QKVVVCCHVPLDPGSASPE---ALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSID---------------T 234 (282)
Q Consensus 174 ~~~~~~-~~~il~~H~p~~~~~~~~~---~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~---------------~ 234 (282)
+..+.. .++|+++|+|++....... ......+.+.+++.+++ |+++|+||+|....... .
T Consensus 148 ~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~ 226 (294)
T cd00839 148 KVDRSKTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYG-VDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNP 226 (294)
T ss_pred HhcccCCCeEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhC-CCEEEEccceeeEeechhhCCEeccccccccCC
Confidence 875433 4589999999876543111 12234567888999995 99999999998764321 2
Q ss_pred CCCeEEeccccccCC----------------CCCCceEEEEEeCC-eEEEEeccc
Q 023422 235 HGIHHRVLEAALECP----------------PGTDAFGHIDAYDD-RLSLVGTGR 272 (282)
Q Consensus 235 ~~i~~~~~~~~~~~~----------------~~~~~f~~v~~~~~-~~~~~~~~~ 272 (282)
+++.|++.|+.+... ....+|.++++.++ .+.++.+..
T Consensus 227 ~g~~yiv~G~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t~l~~~~~~~ 281 (294)
T cd00839 227 KGPVHIVIGAGGNDEGLDPFSAPPPAWSAFRESDYGFGRLTVHNSTHLHFEWIRN 281 (294)
T ss_pred CccEEEEECCCccccCcCcccCCCCCceEEEeccCCEEEEEEEecCeEEEEEEEC
Confidence 678888877654320 12357888998876 677766543
No 7
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.88 E-value=8.8e-22 Score=171.33 Aligned_cols=217 Identities=19% Similarity=0.266 Sum_probs=138.5
Q ss_pred hhhhH-HHHHHHHHHHHhhc-CCccEEEEcCCCCCCCCCCcccH--H--HHHHHHHHHHhc--CCCEEEecCCCCCCCC-
Q 023422 4 YYRHS-LLVLQNAVQRWNNH-QKLKFVIHFGDIVDGFCPKDQSL--E--AVKKVVNEFEKF--NGPAYHMIGNHCLYNL- 74 (282)
Q Consensus 4 ~~~~~-~~~l~~~~~~~~~~-~~~d~vi~~GDi~d~~~~~~~~~--~--~~~~~~~~l~~~--~~pv~~v~GNHD~~~~- 74 (282)
|.+++ ...++.+++.+.+. ++||+||++||++++........ . ....+.+.+++. ++||++++||||....
T Consensus 46 ~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~ 125 (296)
T cd00842 46 YGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVN 125 (296)
T ss_pred cCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCccc
Confidence 34444 57788888888876 58999999999998653321111 1 245566666653 4799999999998531
Q ss_pred --C----h----hh----hhhhhcCC---CCCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCC
Q 023422 75 --P----R----HM----LLPLLKIS---SVDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPN 137 (282)
Q Consensus 75 --~----~----~~----~~~~l~~~---~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (282)
. . +. |..++... .....+||++...+++++|+||+.......... .
T Consensus 126 ~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~------------~----- 188 (296)
T cd00842 126 QFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWL------------L----- 188 (296)
T ss_pred ccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhh------------h-----
Confidence 1 1 11 11222211 123467787754799999999993321100000 0
Q ss_pred CCCCCCCCcccccccccccCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCc-
Q 023422 138 TEKNSPAGLVGLERRFLMFNGAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNC- 216 (282)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~- 216 (282)
.........|++||+++|+++++++.+++|++|+||....... .....+++.+++.+++.
T Consensus 189 -----------------~~~~~~~~~Ql~WL~~~L~~a~~~~~~v~I~~HiPp~~~~~~~--~~~~~~~~~~ii~~y~~~ 249 (296)
T cd00842 189 -----------------GSNETDPAGQLQWLEDELQEAEQAGEKVWIIGHIPPGVNSYDT--LENWSERYLQIINRYSDT 249 (296)
T ss_pred -----------------ccCCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCccccc--chHHHHHHHHHHHHHHHh
Confidence 0113455899999999999998778899999999987654311 12334788999999854
Q ss_pred EEEEEeCcccCCCccccCC-------CCeEEeccccccCCCCCCceE
Q 023422 217 VKVCLAGHDHQGGHSIDTH-------GIHHRVLEAALECPPGTDAFG 256 (282)
Q Consensus 217 v~~~~~GH~H~~~~~~~~~-------~i~~~~~~~~~~~~~~~~~f~ 256 (282)
|.++|+||+|...+....+ .....+.+|.+....++++|+
T Consensus 250 i~~~~~GH~H~d~~~~~~~~~~~~~~~~~~~~~psitp~~~~nP~~r 296 (296)
T cd00842 250 IAGQFFGHTHRDEFRVFYDDNDTGEPINVALIAPSVTPYSGNNPGFR 296 (296)
T ss_pred hheeeecccccceEEEEeCCCCCCCceEEEEecCccCcCCCCCCCCC
Confidence 6789999999998877532 122223334443345677763
No 8
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.87 E-value=1.1e-20 Score=156.60 Aligned_cols=172 Identities=19% Similarity=0.262 Sum_probs=111.3
Q ss_pred HHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh---cCCCEEEecCCCCCCCCChhhhhhhhcCCC
Q 023422 11 VLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK---FNGPAYHMIGNHCLYNLPRHMLLPLLKISS 87 (282)
Q Consensus 11 ~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~---~~~pv~~v~GNHD~~~~~~~~~~~~l~~~~ 87 (282)
.++.+++.+++. +||+|+++||+++... ..+.+..+.+.++. .++|+++++||||+
T Consensus 23 ~~~~i~~~~~~~-~~d~iv~~GDl~~~~~----~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD~---------------- 81 (214)
T cd07399 23 QTDWIVDNAEAL-NIAFVLHLGDIVDDGD----NDAEWEAADKAFARLDKAGIPYSVLAGNHDL---------------- 81 (214)
T ss_pred HHHHHHHHHHHc-CCCEEEECCCccCCCC----CHHHHHHHHHHHHHHHHcCCcEEEECCCCcc----------------
Confidence 445555566666 8999999999998321 13445544444444 45899999999992
Q ss_pred CCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHHHHHH
Q 023422 88 VDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKEQIKW 167 (282)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 167 (282)
++.+++ .++++|++|
T Consensus 82 ----------------~~~ld~-------------------------------------------------~~~~~ql~W 96 (214)
T cd07399 82 ----------------VLALEF-------------------------------------------------GPRDEVLQW 96 (214)
T ss_pred ----------------hhhCCC-------------------------------------------------CCCHHHHHH
Confidence 122222 123789999
Q ss_pred HHHHHHHHhhCCCeEEEEEeeCCCCCCC-CCcc----cccCH-HHHHHHHHccCcEEEEEeCcccCCCccccC----CC-
Q 023422 168 LDAVLQDATKLNQKVVVCCHVPLDPGSA-SPEA----LLWNC-NEVMDVIHRYNCVKVCLAGHDHQGGHSIDT----HG- 236 (282)
Q Consensus 168 l~~~l~~~~~~~~~~il~~H~p~~~~~~-~~~~----~~~~~-~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~----~~- 236 (282)
|+++|++. ++.++|+++|+|+..... .+.. ...+. +.+.+++.++++|+++|+||.|........ .|
T Consensus 97 L~~~L~~~--~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~~~~~~~g~ 174 (214)
T cd07399 97 ANEVLKKH--PDRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTTLVSVGDAGR 174 (214)
T ss_pred HHHHHHHC--CCCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEEEcccCCCCC
Confidence 99999986 567999999999886543 1111 12233 457788999978999999999998766541 12
Q ss_pred -CeEEeccccccCCCCCCceEEEEEeCC--eEEEEec
Q 023422 237 -IHHRVLEAALECPPGTDAFGHIDAYDD--RLSLVGT 270 (282)
Q Consensus 237 -i~~~~~~~~~~~~~~~~~f~~v~~~~~--~~~~~~~ 270 (282)
+..+.+.--.....+++.|++++++++ +|.++.|
T Consensus 175 ~v~~~~~~~q~~~~~g~~~~r~~~f~~~~~~i~~~ty 211 (214)
T cd07399 175 TVHQMLADYQGEPNGGNGFLRLLEFDPDNNKIDVRTY 211 (214)
T ss_pred EeeEEeecccCCCCCCcceEEEEEEecCCCEEEEEeC
Confidence 111111110111235678999999866 4666655
No 9
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.87 E-value=2.2e-20 Score=158.83 Aligned_cols=194 Identities=20% Similarity=0.246 Sum_probs=121.5
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCC----cccHHHHHHHHHHHHh---c-CCCEEEecCCCCCCCCCh-----hhh
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPK----DQSLEAVKKVVNEFEK---F-NGPAYHMIGNHCLYNLPR-----HML 79 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~----~~~~~~~~~~~~~l~~---~-~~pv~~v~GNHD~~~~~~-----~~~ 79 (282)
..+++.+++. +||++|++||++|..... ......++.+++.+.. + ..|++.++||||+++... ..+
T Consensus 23 ~~~~~~i~~~-~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~ 101 (256)
T cd07401 23 TFCSNFIDVI-KPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFDIRGNHDLFNIPSLDSENNYY 101 (256)
T ss_pred HHHHHHHHhh-CCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEEeCCCCCcCCCCCccchhhHH
Confidence 5567777777 999999999999854321 1234445455555543 2 379999999999975321 112
Q ss_pred hhhhcCCCCCCCcceEec-CCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCC
Q 023422 80 LPLLKISSVDGRAYYDFS-PTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNG 158 (282)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (282)
.++.+... ....+|... ..+++.+|+||+.... +... ...+.+
T Consensus 102 ~~y~~~~~-~~~~~~~~~~~~~~~~~I~Ldt~~~~--~~~~---------------------------------~~~~~g 145 (256)
T cd07401 102 RKYSATGR-DGSFSFSHTTRFGNYSFIGVDPTLFP--GPKR---------------------------------PFNFFG 145 (256)
T ss_pred HHhheecC-CCccceEEEecCCCEEEEEEcCccCC--CCCC---------------------------------CCceec
Confidence 22222211 112223221 2589999999983210 1000 001237
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCc-ccc-CCC
Q 023422 159 AVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGH-SID-THG 236 (282)
Q Consensus 159 ~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~-~~~-~~~ 236 (282)
.++++|++||++.|++.. ...++||++|+|+..... ....+...+.++|.+++ |.++||||+|.... ... .+|
T Consensus 146 ~l~~~ql~wL~~~L~~~~-~~~~~IV~~HhP~~~~~~---~~~~~~~~~~~ll~~~~-v~~vl~GH~H~~~~~~p~h~~~ 220 (256)
T cd07401 146 SLDKKLLDRLEKELEKST-NSNYTIWFGHYPTSTIIS---PSAKSSSKFKDLLKKYN-VTAYLCGHLHPLGGLEPVHYAG 220 (256)
T ss_pred cCCHHHHHHHHHHHHhcc-cCCeEEEEEcccchhccC---CCcchhHHHHHHHHhcC-CcEEEeCCccCCCcceeeeecC
Confidence 889999999999998764 335789999999854221 11123345889999995 99999999999877 221 266
Q ss_pred CeEEeccccccC
Q 023422 237 IHHRVLEAALEC 248 (282)
Q Consensus 237 i~~~~~~~~~~~ 248 (282)
+++..+.++..+
T Consensus 221 ~~~~~~~~p~~~ 232 (256)
T cd07401 221 HPYALITNPKPS 232 (256)
T ss_pred CceEEEeCCCCh
Confidence 665555554433
No 10
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.85 E-value=2.3e-20 Score=158.10 Aligned_cols=189 Identities=14% Similarity=0.117 Sum_probs=120.3
Q ss_pred HHHHHHHHHhhcCCccEEEEcCCCCCCCCCC-ccc-HHHHHHHHHHHHhcC--CCEEEecCCCCCCCCC------hhhhh
Q 023422 11 VLQNAVQRWNNHQKLKFVIHFGDIVDGFCPK-DQS-LEAVKKVVNEFEKFN--GPAYHMIGNHCLYNLP------RHMLL 80 (282)
Q Consensus 11 ~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~-~~~-~~~~~~~~~~l~~~~--~pv~~v~GNHD~~~~~------~~~~~ 80 (282)
-|++.++.+.+..+||+||++||++|+.... +.. .+.++.+.+.+.... .|++.||||||+.... ...+.
T Consensus 32 ylr~~~~~~~~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~~~~~rf~ 111 (257)
T cd08163 32 YLRRNWRYMQKQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVLPVRQRFE 111 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCHHHHHHHH
Confidence 3455555555544899999999999853221 111 123555666665543 6999999999984211 12334
Q ss_pred hhhcCCCCCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCC
Q 023422 81 PLLKISSVDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAV 160 (282)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (282)
+.|+. .++.+. .++++||+||+..+ .+.. .+.+
T Consensus 112 ~~Fg~------~~~~~~-~~~~~fV~Lds~~l--~~~~--------------------------------------~~~~ 144 (257)
T cd08163 112 KYFGP------TSRVID-VGNHTFVILDTISL--SNKD--------------------------------------DPDV 144 (257)
T ss_pred HHhCC------CceEEE-ECCEEEEEEccccc--cCCc--------------------------------------cccc
Confidence 44542 235665 79999999998321 1111 1456
Q ss_pred CHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcc-------------c-----ccCHHHHHHHHHccCcEEEEEe
Q 023422 161 GKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEA-------------L-----LWNCNEVMDVIHRYNCVKVCLA 222 (282)
Q Consensus 161 ~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~-------------~-----~~~~~~~~~~l~~~~~v~~~~~ 222 (282)
...+++|+++.++... ++.++||++|+|++......+. . ..+.+.-..+|..- ++.++|+
T Consensus 145 ~~~~~~~l~~~l~~~~-~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~-~P~~vfs 222 (257)
T cd08163 145 YQPPREFLHSFSAMKV-KSKPRILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKAV-QPVIAFS 222 (257)
T ss_pred chhHHHHHHhhhhccC-CCCcEEEEeccccccCCCCCCCCccccCCCCCCCCCccceeecCHHHHHHHHHhh-CCcEEEe
Confidence 7889999999887653 4578999999999865421110 0 11223334566666 4899999
Q ss_pred CcccCCCccccC-------CCCeEEeccccccC
Q 023422 223 GHDHQGGHSIDT-------HGIHHRVLEAALEC 248 (282)
Q Consensus 223 GH~H~~~~~~~~-------~~i~~~~~~~~~~~ 248 (282)
||+|..|..... .++..+++.|++++
T Consensus 223 GhdH~~C~~~h~~~~~~~~~~~~E~tv~S~s~~ 255 (257)
T cd08163 223 GDDHDYCEVVHEYQFNGKSGSTREITVKSISMA 255 (257)
T ss_pred cCCCccceeEcccccCCCCCCceEEEecccccc
Confidence 999999987663 45777777776653
No 11
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.83 E-value=1e-19 Score=153.45 Aligned_cols=204 Identities=15% Similarity=0.151 Sum_probs=121.2
Q ss_pred HHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh-cCCCEEEecCCCCCC-CCChhhhhhhhcCCCC
Q 023422 11 VLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK-FNGPAYHMIGNHCLY-NLPRHMLLPLLKISSV 88 (282)
Q Consensus 11 ~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~-~~~pv~~v~GNHD~~-~~~~~~~~~~l~~~~~ 88 (282)
.++++++.+++. ++|+||++||+++. . .....+++.+.+ .+.|+++++||||++ .....++.+.+. ...
T Consensus 20 ~l~~~~~~~~~~-~~d~vv~~GDl~~~------~-~~~~~~~~~l~~~~~~pv~~v~GNHD~~~~~~~~~~~~~~~-~~~ 90 (239)
T TIGR03729 20 MLETLAQYLKKQ-KIDHLHIAGDISND------F-QRSLPFIEKLQELKGIKVTFNAGNHDMLKDLTYEEIESNDS-PLY 90 (239)
T ss_pred HHHHHHHHHHhc-CCCEEEECCccccc------h-hhHHHHHHHHHHhcCCcEEEECCCCCCCCCCCHHHHHhccc-hhh
Confidence 477888888887 89999999999973 1 222233444443 457999999999986 323333332211 000
Q ss_pred CCCcceEecCCCCeEEEEEcC-eeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHHHHHH
Q 023422 89 DGRAYYDFSPTPEYRFVVLDG-YDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKEQIKW 167 (282)
Q Consensus 89 ~~~~~~~~~~~~~~~~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 167 (282)
-...+..+. .++++|+++++ .+++. +. .+........+.+. +.+...+ .....+.+.+++++|
T Consensus 91 l~~~~~~~~-~~~~~~ig~~gw~d~~~-~~---~~~~~~~~~~~~d~--~~~~~~~---------~~~~~~~~~~~~l~~ 154 (239)
T TIGR03729 91 LHNRFIDIP-NTQWRIIGNNGWYDYSF-SN---DKTSKEILRWKKSF--WFDRRIK---------RPMSDPERTAIVLKQ 154 (239)
T ss_pred hcccccccC-CCceEEEeeccceeccc-cc---ccCHHHHHHhhhcE--EeecccC---------CCCChHHHHHHHHHH
Confidence 011222332 47899999986 34332 21 11122222222211 0000000 001225678999999
Q ss_pred HHHHHHHHhhCCCeEEEEEeeCCCCCCC---CC--c----ccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCe
Q 023422 168 LDAVLQDATKLNQKVVVCCHVPLDPGSA---SP--E----ALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIH 238 (282)
Q Consensus 168 l~~~l~~~~~~~~~~il~~H~p~~~~~~---~~--~----~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~ 238 (282)
|++.|++. .+.++|+++|+||.+... .+ . ....+.+++.+++.++ ++++|+|||+|........++++
T Consensus 155 l~~~l~~~--~~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~-~v~~~i~GH~H~~~~~~~i~~~~ 231 (239)
T TIGR03729 155 LKKQLNQL--DNKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKY-EIKDVIFGHLHRRFGPLTIGGTT 231 (239)
T ss_pred HHHHHHhc--CCCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHh-CCCEEEECCccCCCCCEEECCEE
Confidence 99999887 457899999999865321 00 0 1123457899999998 59999999999997432227886
Q ss_pred EEec
Q 023422 239 HRVL 242 (282)
Q Consensus 239 ~~~~ 242 (282)
+++.
T Consensus 232 ~~~~ 235 (239)
T TIGR03729 232 YHNR 235 (239)
T ss_pred EEec
Confidence 6554
No 12
>PLN02533 probable purple acid phosphatase
Probab=99.83 E-value=1.6e-19 Score=163.46 Aligned_cols=181 Identities=18% Similarity=0.196 Sum_probs=121.0
Q ss_pred HHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhc--CCCEEEecCCCCCCCCC------hhhhhhhhcC
Q 023422 14 NAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKF--NGPAYHMIGNHCLYNLP------RHMLLPLLKI 85 (282)
Q Consensus 14 ~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~--~~pv~~v~GNHD~~~~~------~~~~~~~l~~ 85 (282)
..++.+.+. ++|+|+++||++... .....++.+.+.++.+ .+|+++++||||..... -..+...+.+
T Consensus 156 ~tl~~i~~~-~pD~vl~~GDl~y~~----~~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf~m 230 (427)
T PLN02533 156 STLEHVSKW-DYDVFILPGDLSYAN----FYQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPILHPEKFTAYNARWRM 230 (427)
T ss_pred HHHHHHHhc-CCCEEEEcCcccccc----chHHHHHHHHHHhhhHhhcCceEEeCccccccccccccCcCccchhhcccC
Confidence 456666666 899999999999631 2234455555555543 37999999999985321 0123333443
Q ss_pred CC----CCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCC
Q 023422 86 SS----VDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVG 161 (282)
Q Consensus 86 ~~----~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (282)
+. ...+.||+|+ .++++||.|+++. . ....
T Consensus 231 P~~~~g~~~~~yYSfd-~g~vhfI~Lds~~---~------------------------------------------~~~~ 264 (427)
T PLN02533 231 PFEESGSTSNLYYSFN-VYGVHIIMLGSYT---D------------------------------------------FEPG 264 (427)
T ss_pred CccccCCCCCceEEEE-ECCEEEEEEeCCc---c------------------------------------------ccCc
Confidence 32 2345789997 8999999999821 0 1234
Q ss_pred HHHHHHHHHHHHHHhhCC-CeEEEEEeeCCCCCCCC--Cc-ccccCHHHHHHHHHccCcEEEEEeCcccCCCccc-----
Q 023422 162 KEQIKWLDAVLQDATKLN-QKVVVCCHVPLDPGSAS--PE-ALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSI----- 232 (282)
Q Consensus 162 ~~~~~wl~~~l~~~~~~~-~~~il~~H~p~~~~~~~--~~-~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~----- 232 (282)
.+|++||++.|++...+. .++|+++|+|++..... .. ......+.+.+++.+++ |+++|+||.|.+....
T Consensus 265 ~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~Ll~~~~-VdlvlsGH~H~YeR~~p~~~~ 343 (427)
T PLN02533 265 SEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMETLLYKAR-VDLVFAGHVHAYERFDRVYQG 343 (427)
T ss_pred hHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhHHHHHHHHHHHHHhC-CcEEEecceecccccccccCC
Confidence 789999999999875333 45888899999865421 11 01112357888999985 9999999999875421
Q ss_pred --cCCCCeEEeccccc
Q 023422 233 --DTHGIHHRVLEAAL 246 (282)
Q Consensus 233 --~~~~i~~~~~~~~~ 246 (282)
...+..|++.|+..
T Consensus 344 ~~~~~gpvyiv~G~gG 359 (427)
T PLN02533 344 KTDKCGPVYITIGDGG 359 (427)
T ss_pred ccCCCCCEEEEeCCCc
Confidence 22567788877654
No 13
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.83 E-value=1.6e-18 Score=154.80 Aligned_cols=137 Identities=18% Similarity=0.230 Sum_probs=99.2
Q ss_pred CCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHHHHHHHH
Q 023422 90 GRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKEQIKWLD 169 (282)
Q Consensus 90 ~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 169 (282)
+..||+|...++++||+||+. ..+- .+.|.++++|++||+
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt---~~~G-------------------------------------~~~G~L~eeQL~WLe 329 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTT---NRAG-------------------------------------GDEGSLGQTQFKWIK 329 (496)
T ss_pred CCceEEEEeECCEEEEEEeCC---CcCC-------------------------------------CcCCccCHHHHHHHH
Confidence 456999976799999999993 2110 123789999999999
Q ss_pred HHHHHHhhCCCeEEEEEeeCCCCCCC--CC----cccccCHHHHHHHHHccCcEEEEEeCcccCCCccccC--------C
Q 023422 170 AVLQDATKLNQKVVVCCHVPLDPGSA--SP----EALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDT--------H 235 (282)
Q Consensus 170 ~~l~~~~~~~~~~il~~H~p~~~~~~--~~----~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~--------~ 235 (282)
+.|++. ++.++|||+|||+..... .+ ...+.+.+++.++|.++++|++||+||+|.+...... .
T Consensus 330 qeLa~a--~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~ 407 (496)
T TIGR03767 330 DTLRAS--SDTLFVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDK 407 (496)
T ss_pred HHHhcC--CCCCEEEEECCCCccccccccccccccccccCHHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcC
Confidence 999976 567899999999875432 11 1234567899999999978999999999998754321 2
Q ss_pred CCeEEeccccccCCCCCCceEEEEEe---CCeEEEEecc
Q 023422 236 GIHHRVLEAALECPPGTDAFGHIDAY---DDRLSLVGTG 271 (282)
Q Consensus 236 ~i~~~~~~~~~~~~~~~~~f~~v~~~---~~~~~~~~~~ 271 (282)
+...|+.+|....+ ..|+++++. .+.+++....
T Consensus 408 gfweI~TaSlvdfP---q~~Ri~Ei~~n~dgt~si~tt~ 443 (496)
T TIGR03767 408 GFWEINTASHIDFP---QQGRIIELADNQDGTVSIFTTL 443 (496)
T ss_pred CeEEEeccccccCC---CCceEEEEEeCCCCcEEEEEEe
Confidence 55566677766543 368888885 3456666543
No 14
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.82 E-value=5.3e-19 Score=148.32 Aligned_cols=197 Identities=19% Similarity=0.198 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhhc-CCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcCCC
Q 023422 9 LLVLQNAVQRWNNH-QKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKISS 87 (282)
Q Consensus 9 ~~~l~~~~~~~~~~-~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~~~ 87 (282)
.+.++++.+.++.. ++||+||++||++++ ...+.....++.++++..|+++|+||||++......+.+.+....
T Consensus 25 ~~~~~~i~~~~~~~~~~~D~viiaGDl~~~-----~~~~~~~~~l~~l~~l~~~v~~V~GNHD~~~~~~~~~~~~l~~~~ 99 (232)
T cd07393 25 KNHTEKIKENWDNVVAPEDIVLIPGDISWA-----MKLEEAKLDLAWIDALPGTKVLLKGNHDYWWGSASKLRKALEESR 99 (232)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcCCCccC-----CChHHHHHHHHHHHhCCCCeEEEeCCccccCCCHHHHHHHHHhcC
Confidence 34444444444443 379999999999963 233345556667777767899999999986434444444443221
Q ss_pred CCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHHHHHH
Q 023422 88 VDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKEQIKW 167 (282)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 167 (282)
..-.....+. .+++.+++++...+.. ..+. . .+.. ......+.+.+.++.|
T Consensus 100 ~~~~~n~~~~-~~~i~i~G~~~~~~~~-~~~~-~------------------~~~~--------~~~~~~~~~~~~~l~~ 150 (232)
T cd07393 100 LALLFNNAYI-DDDVAICGTRGWDNPG-NPWP-P------------------INET--------LKVEEDEKIFERELER 150 (232)
T ss_pred eEEeccCcEE-ECCEEEEEEEeeCCCC-Cccc-c------------------cccc--------ccchhHHHHHHHHHHH
Confidence 0000011222 4667777765311100 0000 0 0000 0001124566889999
Q ss_pred HHHHHHHHhhCC--CeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccc----cCCCCeEEe
Q 023422 168 LDAVLQDATKLN--QKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSI----DTHGIHHRV 241 (282)
Q Consensus 168 l~~~l~~~~~~~--~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~----~~~~i~~~~ 241 (282)
|++.|+.+.... .++|+++|+|+.... .+.+.+.+.+.+++ ++++++||+|...... ..+|++|.+
T Consensus 151 l~~~L~~~~~~~~~~~~i~~~H~p~~~~~-------~~~~~~~~~~~~~~-v~~vl~GH~H~~~~~~~~~~~~~gi~~~~ 222 (232)
T cd07393 151 LELSLKAAKKREKEKIKIVMLHYPPANEN-------GDDSPISKLIEEYG-VDICVYGHLHGVGRDRAINGERGGIRYQL 222 (232)
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCcCCC-------CCHHHHHHHHHHcC-CCEEEECCCCCCcccccccceECCEEEEE
Confidence 999999874332 368999999986543 24457788888885 9999999999987533 138898777
Q ss_pred cccccc
Q 023422 242 LEAALE 247 (282)
Q Consensus 242 ~~~~~~ 247 (282)
+++.+-
T Consensus 223 ~~~~~~ 228 (232)
T cd07393 223 VSADYL 228 (232)
T ss_pred Ecchhc
Confidence 776543
No 15
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.82 E-value=1.8e-18 Score=152.30 Aligned_cols=213 Identities=14% Similarity=0.205 Sum_probs=137.3
Q ss_pred HHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHH-HHHHHHh----cCCCEEEecCCCCCCCCChhhhhh----
Q 023422 11 VLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKK-VVNEFEK----FNGPAYHMIGNHCLYNLPRHMLLP---- 81 (282)
Q Consensus 11 ~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~-~~~~l~~----~~~pv~~v~GNHD~~~~~~~~~~~---- 81 (282)
...+.+..+.+..++|+|+.+||+++.. ........|+. +.+.+.+ +.+|++.|+||||+.+....++.+
T Consensus 44 ~VA~~M~~~~~~~~~~FVls~GDNF~~G-v~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLGNHDy~Gn~~AQi~r~~~~ 122 (394)
T PTZ00422 44 LVASYLKQYAKNERVTFLVSPGSNFPGG-VDGLNDPKWKHCFENVYSEESGDMQIPFFTVLGQADWDGNYNAELLKGQNV 122 (394)
T ss_pred HHHHHHHHHHHhCCCCEEEECCccccCC-CCCccchhHHhhHhhhccCcchhhCCCeEEeCCcccccCCchhhhcccccc
Confidence 4455555555544899999999998522 11122223332 3333322 568999999999985432222211
Q ss_pred --------------------hhcCCCCCCCcceEe----cC------------CCCeEEEEEcCeeecccCCCCCCcchH
Q 023422 82 --------------------LLKISSVDGRAYYDF----SP------------TPEYRFVVLDGYDISAIGWPHNHPNTL 125 (282)
Q Consensus 82 --------------------~l~~~~~~~~~~~~~----~~------------~~~~~~i~l~~~~~~~~~~~~~~~~~~ 125 (282)
...++ ..||.+ .. ...+.|+++|+..+.. .++.
T Consensus 123 y~~~~~~~~~~y~~~~~~~~RW~mP----~~yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~l~~-~~~~------ 191 (394)
T PTZ00422 123 YLNGHGQTDIEYDSNNDIYPKWIMP----NYWYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWILSS-SFPY------ 191 (394)
T ss_pred ccccccccccccccccccCCCccCC----chhheeeeeeecccccccccccCCCCEEEEEEEECchhcc-cCCc------
Confidence 11112 234432 11 1237889999844331 1111
Q ss_pred HHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCC-CCcccccCH
Q 023422 126 EALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSA-SPEALLWNC 204 (282)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~-~~~~~~~~~ 204 (282)
....+.+++||+++|+.+.....++||++|+|++.... .+... -.
T Consensus 192 --------------------------------~~~~~~~w~~L~~~L~~a~k~a~WkIVvGHhPIySsG~hg~~~~--L~ 237 (394)
T PTZ00422 192 --------------------------------KKVSERAWQDLKATLEYAPKIADYIIVVGDKPIYSSGSSKGDSY--LS 237 (394)
T ss_pred --------------------------------cccCHHHHHHHHHHHHhhccCCCeEEEEecCceeecCCCCCCHH--HH
Confidence 23457899999999976544557999999999997663 22111 12
Q ss_pred HHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEeccccccCC-------------CCCCceEEEEEeCCeEEEEecc
Q 023422 205 NEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECP-------------PGTDAFGHIDAYDDRLSLVGTG 271 (282)
Q Consensus 205 ~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~~f~~v~~~~~~~~~~~~~ 271 (282)
..+..+|.+++ |+++++||.|..+.... +++.|++.|+.+... ....+|..+++..+++.++-++
T Consensus 238 ~~L~PLL~ky~-VdlYisGHDH~lq~i~~-~gt~yIvSGaGs~~~~~~~~~~~~s~F~~~~~GF~~~~l~~~~l~~~fid 315 (394)
T PTZ00422 238 YYLLPLLKDAQ-VDLYISGYDRNMEVLTD-EGTAHINCGSGGNSGRKSIMKNSKSLFYSEDIGFCIHELNAEGMVTKFVS 315 (394)
T ss_pred HHHHHHHHHcC-cCEEEEccccceEEecC-CCceEEEeCccccccCCCCCCCCCcceecCCCCEEEEEEecCEEEEEEEe
Confidence 47889999996 99999999999987655 889999998865431 2246799999999998888775
No 16
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.78 E-value=5.2e-17 Score=141.03 Aligned_cols=171 Identities=24% Similarity=0.333 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHH--hcCCCEEEecCCCCCCCCChhhhhhhhc
Q 023422 7 HSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFE--KFNGPAYHMIGNHCLYNLPRHMLLPLLK 84 (282)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~--~~~~pv~~v~GNHD~~~~~~~~~~~~l~ 84 (282)
.+.+.+.++++.++.. +||+||++||+++ ......++.+.+.++ .+..|++++|||||.+......+...+.
T Consensus 17 ~~~~~~~~~~~~i~~~-~~D~~v~tGDl~~-----~~~~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~~~~~~~~~~~~ 90 (301)
T COG1409 17 DSEELLEALLAAIEQL-KPDLLVVTGDLTN-----DGEPEEYRRLKELLARLELPAPVIVVPGNHDARVVNGEAFSDQFF 90 (301)
T ss_pred chHHHHHHHHHHHhcC-CCCEEEEccCcCC-----CCCHHHHHHHHHHHhhccCCCceEeeCCCCcCCchHHHHhhhhhc
Confidence 4556788888888877 8999999999998 568889999999999 6778999999999986544433333322
Q ss_pred CCCCCCCcceEecCC-CCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHH
Q 023422 85 ISSVDGRAYYDFSPT-PEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKE 163 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (282)
.. ..+...... ++++++.+|+ .+.+.+. |.+++.
T Consensus 91 ~~----~~~~~~~~~~~~~~~~~~d~---~~~~~~~--------------------------------------G~~~~~ 125 (301)
T COG1409 91 NR----YAVLVGACSSGGWRVIGLDS---SVPGVPL--------------------------------------GRLGAE 125 (301)
T ss_pred cc----CcceEeeccCCceEEEEecC---CCCCCCC--------------------------------------CEECHH
Confidence 11 111222112 7889999998 4433322 779999
Q ss_pred HHHHHHHHHHHHhhCC-CeEEEEEeeCCCCCCC-CCcccccCHHHHHHHHHccCc-EEEEEeCcccCC
Q 023422 164 QIKWLDAVLQDATKLN-QKVVVCCHVPLDPGSA-SPEALLWNCNEVMDVIHRYNC-VKVCLAGHDHQG 228 (282)
Q Consensus 164 ~~~wl~~~l~~~~~~~-~~~il~~H~p~~~~~~-~~~~~~~~~~~~~~~l~~~~~-v~~~~~GH~H~~ 228 (282)
|++|+.+.|+...... ..+++++|+|+..... .+...+.+.......+..+++ ++++++||.|..
T Consensus 126 q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 126 QLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred HHHHHHHHHHhCccccCceEEEecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 9999999999885331 2556666666554333 333444555677888888866 999999999998
No 17
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.77 E-value=1e-17 Score=135.85 Aligned_cols=168 Identities=17% Similarity=0.151 Sum_probs=102.1
Q ss_pred HHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcCCCCCCCcceEec
Q 023422 18 RWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKISSVDGRAYYDFS 97 (282)
Q Consensus 18 ~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~~~~~~~~~~~~~ 97 (282)
.+++. ++|+||++||+++ ......+..+ +.+..++.|+++++||||...... .+......-.. ..+
T Consensus 18 ~~~~~-~~D~vv~~GDl~~-----~~~~~~~~~~-~~l~~~~~p~~~v~GNHD~~~~~~-----~~~~~~~~~~~-~~~- 83 (188)
T cd07392 18 ILKAE-EADAVIVAGDITN-----FGGKEAAVEI-NLLLAIGVPVLAVPGNCDTPEILG-----LLTSAGLNLHG-KVV- 83 (188)
T ss_pred Hhhcc-CCCEEEECCCccC-----cCCHHHHHHH-HHHHhcCCCEEEEcCCCCCHHHHH-----hhhcCcEecCC-CEE-
Confidence 34444 8999999999997 3344444444 777778899999999999742111 11100000000 112
Q ss_pred CCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHHHHHHHHHHHHHHhh
Q 023422 98 PTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKEQIKWLDAVLQDATK 177 (282)
Q Consensus 98 ~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~ 177 (282)
..+++.|+++++..... .+. .+.+++++++|+ +.+...
T Consensus 84 ~~~~~~~~g~~~~~~~~-~~~--------------------------------------~~~~~~~~l~~~-~~l~~~-- 121 (188)
T cd07392 84 EVGGYTFVGIGGSNPTP-FNT--------------------------------------PIELSEEEIVSD-GRLNNL-- 121 (188)
T ss_pred EECCEEEEEeCCCCCCC-CCC--------------------------------------ccccCHHHHHHh-hhhhcc--
Confidence 24678899888621000 000 145678899998 333332
Q ss_pred CCCeEEEEEeeCCCCCCC--CCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEec
Q 023422 178 LNQKVVVCCHVPLDPGSA--SPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVL 242 (282)
Q Consensus 178 ~~~~~il~~H~p~~~~~~--~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~ 242 (282)
...+.|+++|+||..... .......+.+++.+++.+++ ++++||||+|........+++.+++.
T Consensus 122 ~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~-~~~~l~GH~H~~~~~~~~~~~~~~n~ 187 (188)
T cd07392 122 LAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIEERQ-PLLCICGHIHESRGVDKIGNTLVVNP 187 (188)
T ss_pred CCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHHHhC-CcEEEEeccccccceeeeCCeEEecC
Confidence 457899999999976321 11111124578889998884 89999999999864322256654443
No 18
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.76 E-value=1.6e-16 Score=131.44 Aligned_cols=193 Identities=15% Similarity=0.132 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcc-cHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcC-
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQ-SLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKI- 85 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~-~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~- 85 (282)
+...++++++.+.+. ++|+||++||+++ .. ..+.+..+++.+..++.|+++|+||||.. -...+.+.++.
T Consensus 16 n~~~le~l~~~~~~~-~~D~vv~~GDl~~-----~g~~~~~~~~~l~~l~~l~~pv~~V~GNhD~~--v~~~l~~~~~~~ 87 (224)
T cd07388 16 DLEALEKLVGLAPET-GADAIVLIGNLLP-----KAAKSEDYAAFFRILGEAHLPTFYVPGPQDAP--LWEYLREAYNAE 87 (224)
T ss_pred CHHHHHHHHHHHhhc-CCCEEEECCCCCC-----CCCCHHHHHHHHHHHHhcCCceEEEcCCCChH--HHHHHHHHhccc
Confidence 467888888877777 8999999999997 23 46777788888888889999999999962 11112222210
Q ss_pred ---CC---CCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCC
Q 023422 86 ---SS---VDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGA 159 (282)
Q Consensus 86 ---~~---~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (282)
+. ..+ .+..+ .+++.|+++++.... + ..
T Consensus 88 ~~~p~~~~lh~-~~~~~--~g~~~~~GlGGs~~~----~---------------------------------------~e 121 (224)
T cd07388 88 LVHPEIRNVHE-TFAFW--RGPYLVAGVGGEIAD----E---------------------------------------GE 121 (224)
T ss_pred ccCccceecCC-CeEEe--cCCeEEEEecCCcCC----C---------------------------------------CC
Confidence 00 111 11222 255889888862111 0 13
Q ss_pred CCHHHH----HHHHH-HHHHHhh-CCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCcccc
Q 023422 160 VGKEQI----KWLDA-VLQDATK-LNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSID 233 (282)
Q Consensus 160 ~~~~~~----~wl~~-~l~~~~~-~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~ 233 (282)
++++++ +|+.+ .+..... ...+.|+++|.||+.... . -..++.+.+++.+++ +++++|||.|... ...
T Consensus 122 ~sE~e~~~~~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~g~-~---h~GS~alr~~I~~~~-P~l~i~GHih~~~-~~~ 195 (224)
T cd07388 122 PEEHEALRYPAWVAEYRLKALWELKDYRKVFLFHTPPYHKGL-N---EQGSHEVAHLIKTHN-PLVVLVGGKGQKH-ELL 195 (224)
T ss_pred cCHHHHhhhhhhHHHHHHHHHHhCCCCCeEEEECCCCCCCCC-C---ccCHHHHHHHHHHhC-CCEEEEcCCceeE-EEe
Confidence 345542 56433 2222211 356899999999986631 0 144578999999995 8999999999332 223
Q ss_pred CCCCeEEeccccccCCCCCCceEEEEEeCCeEE
Q 023422 234 THGIHHRVLEAALECPPGTDAFGHIDAYDDRLS 266 (282)
Q Consensus 234 ~~~i~~~~~~~~~~~~~~~~~f~~v~~~~~~~~ 266 (282)
+++..++-++. ..+.|.+|++.+.++.
T Consensus 196 -g~t~vvNpg~~-----~~g~~a~i~~~~~~v~ 222 (224)
T cd07388 196 -GASWVVVPGDL-----SEGRYALLDLRARKLE 222 (224)
T ss_pred -CCEEEECCCcc-----cCCcEEEEEecCccee
Confidence 44433333332 2337889998765543
No 19
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.75 E-value=4.8e-17 Score=133.44 Aligned_cols=141 Identities=21% Similarity=0.239 Sum_probs=99.1
Q ss_pred HhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcCCCCCCCcceEecC
Q 023422 19 WNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKISSVDGRAYYDFSP 98 (282)
Q Consensus 19 ~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 98 (282)
++.. +||+||++||++++..........++.+++.+...++|+++++||||
T Consensus 37 ~~~~-~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD---------------------------- 87 (199)
T cd07383 37 LDAE-KPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFGNHD---------------------------- 87 (199)
T ss_pred Hhhc-CCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECccCC----------------------------
Confidence 3445 89999999999986533322456667777777777899999999999
Q ss_pred CCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHHHHHHHHHHHHHHh--
Q 023422 99 TPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKEQIKWLDAVLQDAT-- 176 (282)
Q Consensus 99 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~-- 176 (282)
. . +.+.+.|++||++.+.+..
T Consensus 88 ----------~-----~------------------------------------------g~l~~~ql~wL~~~l~~~~~~ 110 (199)
T cd07383 88 ----------G-----Y------------------------------------------DWIRPSQIEWFKETSAALKKK 110 (199)
T ss_pred ----------C-----C------------------------------------------CCCCHHHHHHHHHHHHHHhhc
Confidence 0 0 3456899999999998863
Q ss_pred -hCCCeEEEEEeeCCCCCCC--C----------C-cccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEec
Q 023422 177 -KLNQKVVVCCHVPLDPGSA--S----------P-EALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVL 242 (282)
Q Consensus 177 -~~~~~~il~~H~p~~~~~~--~----------~-~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~ 242 (282)
....+.++|+|+|+..... . + .....+.+++.+.+.+..+|+++|+||+|.+......+++. ++.
T Consensus 111 ~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~~~~~i~-l~~ 189 (199)
T cd07383 111 YGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGHDHGNDFCGRYNGIW-LCY 189 (199)
T ss_pred cCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcceecccCCEE-EeC
Confidence 2346889999999864321 0 1 22334456677777776679999999999987655535653 444
Q ss_pred cccc
Q 023422 243 EAAL 246 (282)
Q Consensus 243 ~~~~ 246 (282)
++.+
T Consensus 190 g~~~ 193 (199)
T cd07383 190 GRGT 193 (199)
T ss_pred CCCC
Confidence 4443
No 20
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.68 E-value=7.2e-15 Score=130.35 Aligned_cols=112 Identities=20% Similarity=0.353 Sum_probs=71.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCC--CCCc---------ccccC---HHHHHHHHHccCcEEEEEe
Q 023422 157 NGAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGS--ASPE---------ALLWN---CNEVMDVIHRYNCVKVCLA 222 (282)
Q Consensus 157 ~~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~--~~~~---------~~~~~---~~~~~~~l~~~~~v~~~~~ 222 (282)
.|.++++|++||++.|+.....+..+|+++|+|+.... ..+. ..+.+ ..++.++|.++++|.+|||
T Consensus 326 ~G~Ld~eQLaWLe~~La~a~a~~p~VVV~hHpPi~t~gi~~md~w~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~Ls 405 (492)
T TIGR03768 326 HGSLDAKRWDWLKAELARGQADGQLMIIAAHIPIAVSPIGSEMEWWLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIA 405 (492)
T ss_pred ceeeCHHHHHHHHHHHHhCcCCCceEEEEeCCCcccCCccchhhhccccccccccccccccHHHHHHHHhcCCCeEEEEc
Confidence 47899999999999999885444456666666665411 1100 01222 2489999999999999999
Q ss_pred CcccCCCcccc--C------CCCeEEeccccccCCCCCCceEEEEEe---CCeEEEEecc
Q 023422 223 GHDHQGGHSID--T------HGIHHRVLEAALECPPGTDAFGHIDAY---DDRLSLVGTG 271 (282)
Q Consensus 223 GH~H~~~~~~~--~------~~i~~~~~~~~~~~~~~~~~f~~v~~~---~~~~~~~~~~ 271 (282)
||.|.+...-. . .|...+..+|... -...|++++|. .+.+++....
T Consensus 406 GHvHrn~v~a~~~p~~~~pe~gFWeveTaSl~D---fPQq~R~~Ei~~n~d~tvsi~tt~ 462 (492)
T TIGR03768 406 GHRHLNTVKAFPSPDPARPEYGFWQVETASLRD---FPQQFRTFEIYLNSDDTVSIEAVN 462 (492)
T ss_pred CCcccccccccCCCCCCCCcCceEEEeehhhcc---chhhceEEEEEeCCCCeEEEEEEe
Confidence 99998765422 1 1333344444332 23467887775 3457776554
No 21
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=3.3e-15 Score=132.11 Aligned_cols=159 Identities=21% Similarity=0.244 Sum_probs=110.6
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC--CCEEEecCCCCCCCCCh---hhhhhhhcCCC----CCCCcce
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN--GPAYHMIGNHCLYNLPR---HMLLPLLKISS----VDGRAYY 94 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~--~pv~~v~GNHD~~~~~~---~~~~~~l~~~~----~~~~~~~ 94 (282)
++|+||+.||+.-...... ..++.+.+.++.+. .|.+++.||||....+. ..+...+.++. ...+-||
T Consensus 174 k~d~vlhiGDlsYa~~~~n---~~wD~f~r~vEp~As~vPymv~~GNHE~d~~~~~~F~~y~~Rf~mP~~~s~s~~~l~Y 250 (452)
T KOG1378|consen 174 KPDAVLHIGDLSYAMGYSN---WQWDEFGRQVEPIASYVPYMVCSGNHEIDWPPQPCFVPYSARFNMPGNSSESDSNLYY 250 (452)
T ss_pred CCcEEEEecchhhcCCCCc---cchHHHHhhhhhhhccCceEEecccccccCCCcccccccceeeccCCCcCCCCCceeE
Confidence 6999999999994221111 55666666666543 69999999999854321 12233444442 1234699
Q ss_pred EecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHHHHHHHHHHHHH
Q 023422 95 DFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKEQIKWLDAVLQD 174 (282)
Q Consensus 95 ~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~ 174 (282)
+|+ .++++||+|+++... + -....+|-+||++.|+.
T Consensus 251 Sfd-~G~vhfv~lsse~~~--~-----------------------------------------~~~~~~QY~WL~~dL~~ 286 (452)
T KOG1378|consen 251 SFD-VGGVHFVVLSTETYY--N-----------------------------------------FLKGTAQYQWLERDLAS 286 (452)
T ss_pred EEe-eccEEEEEEeccccc--c-----------------------------------------ccccchHHHHHHHHHHH
Confidence 997 999999999994322 1 12337899999999999
Q ss_pred HhhC-CCeEEEEEeeCCCCCCCC--Ccccc--cCHHHHHHHHHccCcEEEEEeCcccCCCc
Q 023422 175 ATKL-NQKVVVCCHVPLDPGSAS--PEALL--WNCNEVMDVIHRYNCVKVCLAGHDHQGGH 230 (282)
Q Consensus 175 ~~~~-~~~~il~~H~p~~~~~~~--~~~~~--~~~~~~~~~l~~~~~v~~~~~GH~H~~~~ 230 (282)
...+ ..++|++.|.|.+..... -.... .....+++++.+++ |+++|+||.|.+..
T Consensus 287 v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~-VDvvf~GHvH~YER 346 (452)
T KOG1378|consen 287 VDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYK-VDVVFWGHVHRYER 346 (452)
T ss_pred hcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhc-eeEEEeccceehhc
Confidence 8755 678999999999977641 11111 22247899999996 99999999997653
No 22
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=99.65 E-value=1.4e-15 Score=137.69 Aligned_cols=213 Identities=18% Similarity=0.293 Sum_probs=135.4
Q ss_pred HHHHHHHHHHhhcCC-ccEEEEcCCCCCCCCCC---cccHHHHHHHHHHHHhc--CCCEEEecCCCCCCC---C-----C
Q 023422 10 LVLQNAVQRWNNHQK-LKFVIHFGDIVDGFCPK---DQSLEAVKKVVNEFEKF--NGPAYHMIGNHCLYN---L-----P 75 (282)
Q Consensus 10 ~~l~~~~~~~~~~~~-~d~vi~~GDi~d~~~~~---~~~~~~~~~~~~~l~~~--~~pv~~v~GNHD~~~---~-----~ 75 (282)
..+..+++.+++..+ +|+|+++||++.+..-. ....+.+..+.+.+.+. ++|||+..||||... + +
T Consensus 195 ~lies~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~ 274 (577)
T KOG3770|consen 195 RLIESALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVP 274 (577)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCc
Confidence 457788888887644 99999999999865111 12223334444455443 379999999999642 1 1
Q ss_pred hh------------hhhhhhcC---CCCCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCC
Q 023422 76 RH------------MLLPLLKI---SSVDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEK 140 (282)
Q Consensus 76 ~~------------~~~~~l~~---~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (282)
.. .|..|+.. .+..+++||.....+|.++|.||+..+....+
T Consensus 275 ~~~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~----------------------- 331 (577)
T KOG3770|consen 275 KRHSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNF----------------------- 331 (577)
T ss_pred chhhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccce-----------------------
Confidence 11 12222321 22467788888778999999999865543321
Q ss_pred CCCCCcccccccccccCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHcc-CcEEE
Q 023422 141 NSPAGLVGLERRFLMFNGAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRY-NCVKV 219 (282)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~-~~v~~ 219 (282)
+...+..-...|++|+..+|++++.++.+|-+++|+||....+ ...+.++ +..++.++ +.+..
T Consensus 332 ------------~L~~n~tdp~~~lqWf~~~L~~ae~~GekVhil~HIPpG~~~c-~~~ws~~---f~~iv~r~~~tI~g 395 (577)
T KOG3770|consen 332 ------------WLYANQTDPIDQLQWFVDQLQEAESAGEKVHILGHIPPGDGVC-LEGWSIN---FYRIVNRFRSTIAG 395 (577)
T ss_pred ------------eeeecCCCchHHhhHHHHHHHHHHhcCCEEEEEEeeCCCCcch-hhhhhHH---HHHHHHHHHHhhhh
Confidence 1122345557889999999999999999999999999876553 1222233 33444444 23678
Q ss_pred EEeCcccCCCccccCCCC---e--EEeccccccC-CCCCCceEEEEEe
Q 023422 220 CLAGHDHQGGHSIDTHGI---H--HRVLEAALEC-PPGTDAFGHIDAY 261 (282)
Q Consensus 220 ~~~GH~H~~~~~~~~~~i---~--~~~~~~~~~~-~~~~~~f~~v~~~ 261 (282)
.|+||+|..++.+..+.- + ...++++..+ ....++|++..++
T Consensus 396 qf~GH~h~d~f~v~yde~~~~p~~v~~i~~svtty~~~~p~yr~y~~~ 443 (577)
T KOG3770|consen 396 QFYGHTHIDEFRVFYDEETGHPIAVAYIGPSVTTYYNKNPGYRIYAVD 443 (577)
T ss_pred hccccCcceeEEEEeccccCCceeeeeccccceehhccCCCceecccC
Confidence 899999999976643211 1 1122222222 3566788877666
No 23
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.60 E-value=3.3e-14 Score=118.45 Aligned_cols=65 Identities=22% Similarity=0.336 Sum_probs=50.2
Q ss_pred hhhHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhc---CCCEEEecCCCCCCC
Q 023422 5 YRHSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKF---NGPAYHMIGNHCLYN 73 (282)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~---~~pv~~v~GNHD~~~ 73 (282)
..+..+.++++++.+.+. ++|+|+++||++++.. .+.+.+..+.+.+.++ ++|+++++||||.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~-~~d~i~~~GD~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~ 90 (223)
T cd00840 23 REDQFEAFEEIVELAIEE-KVDFVLIAGDLFDSNN---PSPEALELLIEALRRLKEAGIPVFIIAGNHDSPS 90 (223)
T ss_pred hHHHHHHHHHHHHHHHhc-CCCEEEECCcccCCCC---CCHHHHHHHHHHHHHHHHCCCCEEEecCCCCCcc
Confidence 345677889999988888 9999999999998532 2344555666666655 689999999999864
No 24
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.60 E-value=4e-13 Score=108.47 Aligned_cols=204 Identities=17% Similarity=0.211 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCC--CCCCCCcccHHHHHHH--HHHHHhcCCCEEEecCCCCCCCCChhhhhhhh
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIV--DGFCPKDQSLEAVKKV--VNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLL 83 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~--d~~~~~~~~~~~~~~~--~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l 83 (282)
+...+.++++.+... ++|+++++||++ + .......... .+.+...++||+++|||=|-. .....+
T Consensus 15 ~~~~~~k~~~~~~~~-~~D~lviaGDlt~~~-----~~~~~~~~~~~~~e~l~~~~~~v~avpGNcD~~-----~v~~~l 83 (226)
T COG2129 15 SEDSLKKLLNAAADI-RADLLVIAGDLTYFH-----FGPKEVAEELNKLEALKELGIPVLAVPGNCDPP-----EVIDVL 83 (226)
T ss_pred chHHHHHHHHHHhhc-cCCEEEEecceehhh-----cCchHHHHhhhHHHHHHhcCCeEEEEcCCCChH-----HHHHHH
Confidence 456677888777777 899999999999 4 1222222232 566777779999999997752 122222
Q ss_pred cCCCCCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHH
Q 023422 84 KISSVDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKE 163 (282)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (282)
......-.. -.. ..+++.|+++.+.....+ ++| ..++++
T Consensus 84 ~~~~~~v~~-~v~-~i~~~~~~G~Ggsn~tp~-------------------------nt~--------------~e~~E~ 122 (226)
T COG2129 84 KNAGVNVHG-RVV-EIGGYGFVGFGGSNPTPF-------------------------NTP--------------REFSED 122 (226)
T ss_pred Hhccccccc-ceE-EecCcEEEEecccCCCCC-------------------------CCc--------------cccCHH
Confidence 211110000 122 357777776544111111 122 345555
Q ss_pred HHHHHHH-HHHHHhhCCCeEEEEEeeCCCCCCC-CCcc-cccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEE
Q 023422 164 QIKWLDA-VLQDATKLNQKVVVCCHVPLDPGSA-SPEA-LLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHR 240 (282)
Q Consensus 164 ~~~wl~~-~l~~~~~~~~~~il~~H~p~~~~~~-~~~~-~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~ 240 (282)
++.-..+ .+.... +...|+.+|.||+.... .+.. .-..+.++.+++.++. +.+++|||.|.+.-.-. -|-+.+
T Consensus 123 ~I~s~l~~~v~~~~--~~~~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefq-P~l~i~GHIHEs~G~d~-iG~Tiv 198 (226)
T COG2129 123 EIYSKLKSLVKKAD--NPVNILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQ-PLLGLHGHIHESRGIDK-IGNTIV 198 (226)
T ss_pred HHHHHHHHHHhccc--CcceEEEecCCCCCccccCCCCccccchHHHHHHHHHhC-CceEEEeeecccccccc-cCCeEE
Confidence 5544333 333321 11229999999987653 1111 1123478999999994 89999999998766444 333335
Q ss_pred eccccccCCCCCCceEEEEEeCCeEEEEecc
Q 023422 241 VLEAALECPPGTDAFGHIDAYDDRLSLVGTG 271 (282)
Q Consensus 241 ~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~ 271 (282)
+.+++. ..+.|+++++.+..+..+.+.
T Consensus 199 VNPG~~----~~g~yA~i~l~~~~Vk~~~~~ 225 (226)
T COG2129 199 VNPGPL----GEGRYALIELEKEVVKLEQFS 225 (226)
T ss_pred ECCCCc----cCceEEEEEecCcEEEEEEec
Confidence 555553 556899999999988877653
No 25
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.59 E-value=2.7e-14 Score=110.95 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=42.5
Q ss_pred HHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCC---CEEEecCCCCC
Q 023422 12 LQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNG---PAYHMIGNHCL 71 (282)
Q Consensus 12 l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~---pv~~v~GNHD~ 71 (282)
+.++++.+++. ++|+|+++||+++ ....+.++.+.+.++.+.. |+++++||||.
T Consensus 24 l~~~~~~~~~~-~~d~vi~~GDl~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~v~GNHD~ 80 (144)
T cd07400 24 LDRLLAEIKAL-DPDLVVITGDLTQ-----RGLPEEFEEAREFLDALPAPLEPVLVVPGNHDV 80 (144)
T ss_pred HHHHHHHHhcc-CCCEEEECCCCCC-----CCCHHHHHHHHHHHHHccccCCcEEEeCCCCeE
Confidence 56677777777 8999999999998 3445666666677776654 99999999995
No 26
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.57 E-value=8.4e-14 Score=118.00 Aligned_cols=244 Identities=18% Similarity=0.170 Sum_probs=127.5
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCC-CChhhhhhhhcCCCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYN-LPRHMLLPLLKISSVDGR 91 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~-~~~~~~~~~l~~~~~~~~ 91 (282)
.++++++.+..+||+|+++||++.|.+..+ +...+..+....-..++|+.++.||||-.+ ..+.++..++.....
T Consensus 89 t~F~~rvL~sE~PDlVVfTGD~i~g~~t~D-a~~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~--- 164 (379)
T KOG1432|consen 89 TNFVSRVLASEKPDLVVFTGDNIFGHSTQD-AATSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFISKLPY--- 164 (379)
T ss_pred HHHHHHHHhccCCCEEEEeCCcccccccHh-HHHHHHHHhhhHhhcCCCeEEEecccccccccCHHHHHHHHhcCCC---
Confidence 455666665449999999999999743332 334444444455556799999999999754 344455555432110
Q ss_pred cceEecCC-CCeE-EEEEcCeeecccCCCCCCcch--HHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHHHHHH
Q 023422 92 AYYDFSPT-PEYR-FVVLDGYDISAIGWPHNHPNT--LEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKEQIKW 167 (282)
Q Consensus 92 ~~~~~~~~-~~~~-~i~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 167 (282)
....+.+. +... +-...++.+.+++...+.... ..++.+|++........ .+.+| ..+...|+.|
T Consensus 165 s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~sv~~lyfld~~~~~s~~~---~~~~Y--------dwik~sq~~w 233 (379)
T KOG1432|consen 165 SLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELENKSVFNLYFLDSSSYTSVPP---LLPGY--------DWIKESQLEW 233 (379)
T ss_pred ccccCCCcccceeeeecccceEEEeccCCCcccccCceeeEEEEecCCcccccc---cccCc--------cchhhhhHHH
Confidence 00001111 1111 111122222333322221111 11222222222111110 11111 4678999999
Q ss_pred HHHHHHHHhh----CC-CeEEEEEeeCCCCCCC--C----------CcccccCHHHHHHHHHccCcEEEEEeCcccCCCc
Q 023422 168 LDAVLQDATK----LN-QKVVVCCHVPLDPGSA--S----------PEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGH 230 (282)
Q Consensus 168 l~~~l~~~~~----~~-~~~il~~H~p~~~~~~--~----------~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~ 230 (282)
|...-.+..+ .+ .+-+++.|.|+..... . ....-...+.+.+.|....+|+++++||.|.+.+
T Consensus 234 l~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDf 313 (379)
T KOG1432|consen 234 LSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDF 313 (379)
T ss_pred HhhhhhhhhcccCccCCCCceEEEEcccHHHhhccCCCcccceeeccccccccccHHHHHHHhccCcceEEeccccccce
Confidence 9887632111 11 2668899999753221 0 0111111256778888666799999999999999
Q ss_pred cccCCCCeEEeccccccCC-CC----CCceEEEEEeCCeEEEEecc
Q 023422 231 SIDTHGIHHRVLEAALECP-PG----TDAFGHIDAYDDRLSLVGTG 271 (282)
Q Consensus 231 ~~~~~~i~~~~~~~~~~~~-~~----~~~f~~v~~~~~~~~~~~~~ 271 (282)
+....+...+..++..+.. .. ...-++++++..+-.++.--
T Consensus 314 C~~~k~~~wlCygGgaGyggYg~~gw~Rr~Rv~e~d~~~~~IkTWK 359 (379)
T KOG1432|consen 314 CGELKGELWLCYGGGAGYGGYGIGGWERRARVFELDLNKDRIKTWK 359 (379)
T ss_pred ecccCCeEEEEecCCCccCCcCcCCcccceEEEEccccccccceee
Confidence 8765664555666554432 11 22456777765443344333
No 27
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.56 E-value=2.1e-14 Score=114.41 Aligned_cols=59 Identities=24% Similarity=0.155 Sum_probs=39.4
Q ss_pred CeEEEEEeeCCCCCCC--CCcccccC---HHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEE
Q 023422 180 QKVVVCCHVPLDPGSA--SPEALLWN---CNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHR 240 (282)
Q Consensus 180 ~~~il~~H~p~~~~~~--~~~~~~~~---~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~ 240 (282)
+++||++|+||..... .+.....+ .+.+.+++... +|++++|||+|....... +|+.++
T Consensus 97 ~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~v~~~i~GH~H~~~~~~~-~g~~~~ 160 (166)
T cd07404 97 GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILAD-PIDLWIHGHTHFNFDYRI-GGTRVL 160 (166)
T ss_pred CCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhc-CCCEEEECCccccceEEE-CCEEEE
Confidence 5889999999987543 11112222 23355666665 599999999999976655 777543
No 28
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.7e-13 Score=112.65 Aligned_cols=211 Identities=17% Similarity=0.229 Sum_probs=122.3
Q ss_pred CccEEEEcCCCCCCCCCCc-ccHHHHHHHHHHHHh--cCCCEEEecCCCCCCCCChhhhhhhhcCCCC---CCCcceEec
Q 023422 24 KLKFVIHFGDIVDGFCPKD-QSLEAVKKVVNEFEK--FNGPAYHMIGNHCLYNLPRHMLLPLLKISSV---DGRAYYDFS 97 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~-~~~~~~~~~~~~l~~--~~~pv~~v~GNHD~~~~~~~~~~~~l~~~~~---~~~~~~~~~ 97 (282)
.+|+|+-+||.+-.....+ .+++..+.+.+.+.. +..|.|.|.||||+.+.-+-++...++.-.. .-..||. .
T Consensus 75 ~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~rsf~~-~ 153 (336)
T KOG2679|consen 75 DIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPRSFYV-D 153 (336)
T ss_pred cceEEEecCCcccccCCCCCCChhHHhhhhhcccCcccccchhhhccCccccCchhhhhhHHHHhhccceecccHHhh-c
Confidence 8999999999994222222 344444555555543 5579999999999975433344444432110 0011111 0
Q ss_pred CCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCC-----CCCHHHHHHHHHHH
Q 023422 98 PTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNG-----AVGKEQIKWLDAVL 172 (282)
Q Consensus 98 ~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~wl~~~l 172 (282)
..-+.+..+++. .+.... -..| .+.+..|.+ .+-..++.||+..|
T Consensus 154 -ae~ve~f~v~~~---~f~~d~---------------~~~~-----------~~~~ydw~~v~PR~~~~~~~l~~le~~L 203 (336)
T KOG2679|consen 154 -AEIVEMFFVDTT---PFMDDT---------------FTLC-----------TDDVYDWRGVLPRVKYLRALLSWLEVAL 203 (336)
T ss_pred -ceeeeeeccccc---cchhhh---------------eecc-----------cccccccccCChHHHHHHHHHHHHHHHH
Confidence 111222222221 111000 0000 000111111 23367888999999
Q ss_pred HHHhhCCCeEEEEEeeCCCCCCC-CCcccccCHHHHHHHHHccCcEEEEEeCcccCCCcccc-CCCCeEEeccccccCC-
Q 023422 173 QDATKLNQKVVVCCHVPLDPGSA-SPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSID-THGIHHRVLEAALECP- 249 (282)
Q Consensus 173 ~~~~~~~~~~il~~H~p~~~~~~-~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~-~~~i~~~~~~~~~~~~- 249 (282)
++. ..++.||++|+|+..... ++...+ .+++..+|+.++ |++.++||.|--+.... .++|.|++.|+.+.+-
T Consensus 204 ~~S--~a~wkiVvGHh~i~S~~~HG~T~eL--~~~LlPiL~~n~-VdlY~nGHDHcLQhis~~e~~iqf~tSGagSkaw~ 278 (336)
T KOG2679|consen 204 KAS--RAKWKIVVGHHPIKSAGHHGPTKEL--EKQLLPILEANG-VDLYINGHDHCLQHISSPESGIQFVTSGAGSKAWR 278 (336)
T ss_pred HHh--hcceEEEecccceehhhccCChHHH--HHHHHHHHHhcC-CcEEEecchhhhhhccCCCCCeeEEeeCCcccccC
Confidence 988 467999999999886553 222222 267889999996 99999999998877655 4789888888766541
Q ss_pred ----------------CCCCceEEEEEeCCeEEEEec
Q 023422 250 ----------------PGTDAFGHIDAYDDRLSLVGT 270 (282)
Q Consensus 250 ----------------~~~~~f~~v~~~~~~~~~~~~ 270 (282)
-+..+|--+++...+.++.-+
T Consensus 279 g~~~~~~~~p~~lkF~YdgqGfmsv~is~~e~~vvfy 315 (336)
T KOG2679|consen 279 GTDHNPEVNPKELKFYYDGQGFMSVEISHSEARVVFY 315 (336)
T ss_pred CCccCCccChhheEEeeCCCceEEEEEecceeEEEEE
Confidence 122367777777666554443
No 29
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.55 E-value=1.8e-14 Score=114.21 Aligned_cols=50 Identities=26% Similarity=0.452 Sum_probs=35.7
Q ss_pred hCCCeEEEEEeeCCCCCCCCCcc---cccCHHHHHHHHHccCcEEEEEeCcccC
Q 023422 177 KLNQKVVVCCHVPLDPGSASPEA---LLWNCNEVMDVIHRYNCVKVCLAGHDHQ 227 (282)
Q Consensus 177 ~~~~~~il~~H~p~~~~~~~~~~---~~~~~~~~~~~l~~~~~v~~~~~GH~H~ 227 (282)
....++|+++|+|+......... .......+..++..++ |+++|+||+|.
T Consensus 147 ~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~GH~H~ 199 (200)
T PF00149_consen 147 KNDDPVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYN-VDLVLSGHTHR 199 (200)
T ss_dssp EEESEEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTT-CSEEEEESSSS
T ss_pred ccccceeEEEecCCCCccccccccchhhccHHHHHHHHhhCC-CCEEEeCceec
Confidence 35679999999999876632111 1233456777777775 99999999996
No 30
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.54 E-value=2.8e-13 Score=109.05 Aligned_cols=207 Identities=16% Similarity=0.185 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHH--------------------------HHHHHHHHHhcC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEA--------------------------VKKVVNEFEKFN 59 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~--------------------------~~~~~~~l~~~~ 59 (282)
.+..+.+.++++.+.+. .+|+|+++||+..+. ...+. ++.+++.|..++
T Consensus 15 ~g~~e~l~~l~~~~~e~-~~D~~v~~G~~~~~~----a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L~~~~ 89 (255)
T PF14582_consen 15 RGDFELLERLVEVIPEK-GPDAVVFVGDLLKAE----ARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRILGELG 89 (255)
T ss_dssp TT-HHHHHHHHHHHHHH-T-SEEEEES-SS-TC----HHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred chHHHHHHHHHhhcccc-CCCEEEEeccccccc----hhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHHHhcC
Confidence 56788899999988888 899999999998632 22233 347888888999
Q ss_pred CCEEEecCCCCCCCCChhhhhhhhcCCCCCC-----CcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhc
Q 023422 60 GPAYHMIGNHCLYNLPRHMLLPLLKISSVDG-----RAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEK 134 (282)
Q Consensus 60 ~pv~~v~GNHD~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (282)
+|+++||||||-+. ...+.+.+......- ...+.+. .+.+-++++.+ .+.+.....
T Consensus 90 ~p~~~vPG~~Dap~--~~~lr~a~~~e~v~p~~~~vH~sf~~~-~g~y~v~G~GG---eI~~~~~~~------------- 150 (255)
T PF14582_consen 90 VPVFVVPGNMDAPE--RFFLREAYNAEIVTPHIHNVHESFFFW-KGEYLVAGMGG---EITDDQREE------------- 150 (255)
T ss_dssp SEEEEE--TTS-SH--HHHHHHHHHCCCC-TTEEE-CTCEEEE-TTTEEEEEE-S---EEESSS-BC-------------
T ss_pred CcEEEecCCCCchH--HHHHHHHhccceeccceeeeeeeeccc-CCcEEEEecCc---cccCCCccc-------------
Confidence 99999999999742 111222222100000 0012222 35688888877 332221100
Q ss_pred CCCCCCCCCCCcccccccccccCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCC-CCCCCCcccccCHHHHHHHHHc
Q 023422 135 NPNTEKNSPAGLVGLERRFLMFNGAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLD-PGSASPEALLWNCNEVMDVIHR 213 (282)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~-~~~~~~~~~~~~~~~~~~~l~~ 213 (282)
..+ -...-....|..+.+.++ +..+.|++.|.||. ... ..-..++.+.+++++
T Consensus 151 ------~~~--------------LrYP~weaey~lk~l~el--k~~r~IlLfhtpPd~~kg----~~h~GS~~V~dlIk~ 204 (255)
T PF14582_consen 151 ------EFK--------------LRYPAWEAEYSLKFLREL--KDYRKILLFHTPPDLHKG----LIHVGSAAVRDLIKT 204 (255)
T ss_dssp ------SSS---------------EEEHHHHHHHHGGGGGC--TSSEEEEEESS-BTBCTC----TBTTSBHHHHHHHHH
T ss_pred ------ccc--------------ccchHHHHHHHHHHHHhc--ccccEEEEEecCCccCCC----cccccHHHHHHHHHh
Confidence 000 012223455555566665 45688888999992 111 011234688999999
Q ss_pred cCcEEEEEeCcccCCCccccCCCCeEEeccccccCCCCCCceEEEEEeCCeEEEE
Q 023422 214 YNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECPPGTDAFGHIDAYDDRLSLV 268 (282)
Q Consensus 214 ~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~ 268 (282)
++ +.+|+|||.|........+.+-.++-|+... +.|++|++..+++...
T Consensus 205 ~~-P~ivl~Ghihe~~~~e~lG~TlVVNPGsL~~-----G~yAvI~l~~~~v~~g 253 (255)
T PF14582_consen 205 YN-PDIVLCGHIHESHGKESLGKTLVVNPGSLAE-----GDYAVIDLEQDKVEFG 253 (255)
T ss_dssp H---SEEEE-SSS-EE--EEETTEEEEE--BGGG-----TEEEEEETTTTEEEEE
T ss_pred cC-CcEEEecccccchhhHHhCCEEEecCccccc-----CceeEEEecccccccC
Confidence 95 8999999999987544324444444444443 4899999999888753
No 31
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.52 E-value=1e-13 Score=118.91 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
.+.++++++.+++. +||+|+++||+++... ....+.+..+++.+.+ ..|+|+|+||||++
T Consensus 66 ~~~l~~~v~~i~~~-~pDlVli~GD~~d~~~--~~~~~~~~~~L~~L~~-~~pv~~V~GNHD~~ 125 (271)
T PRK11340 66 LSLISDAIALGIEQ-KPDLILLGGDYVLFDM--PLNFSAFSDVLSPLAE-CAPTFACFGNHDRP 125 (271)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEccCcCCCCc--cccHHHHHHHHHHHhh-cCCEEEecCCCCcc
Confidence 45788888888888 9999999999997211 1123334444555544 26999999999985
No 32
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.48 E-value=9.2e-13 Score=109.85 Aligned_cols=61 Identities=28% Similarity=0.383 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhc--CCCEEEecCCCCCCCCCh
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKF--NGPAYHMIGNHCLYNLPR 76 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~--~~pv~~v~GNHD~~~~~~ 76 (282)
.+.++++++.+++. +||+|+++||++++.... . +.+.+.++.+ ..|+++++||||++....
T Consensus 18 ~~~~~~~~~~~~~~-~~d~vl~~GD~~~~~~~~---~---~~~~~~l~~l~~~~~v~~v~GNHD~~~~~~ 80 (223)
T cd07385 18 RERLERLVEKINAL-KPDLVVLTGDLVDGSVDV---L---ELLLELLKKLKAPLGVYAVLGNHDYYSGDE 80 (223)
T ss_pred HHHHHHHHHHHhcc-CCCEEEEcCcccCCcchh---h---HHHHHHHhccCCCCCEEEECCCcccccCch
Confidence 35678888888887 899999999999843111 1 3344444443 379999999999865433
No 33
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.42 E-value=4.5e-12 Score=98.05 Aligned_cols=182 Identities=19% Similarity=0.194 Sum_probs=100.6
Q ss_pred HHHHHHHhhc-CCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcCCCCCCC
Q 023422 13 QNAVQRWNNH-QKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKISSVDGR 91 (282)
Q Consensus 13 ~~~~~~~~~~-~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~~~~~~~ 91 (282)
+++.+.|... ...|.|++.|||...+ ..+....-++.+..++..-|.+.||||++-.+.+++.+.+...-.--+
T Consensus 31 ekI~k~W~~~v~~eDiVllpGDiSWaM-----~l~ea~~Dl~~i~~LPG~K~m~rGNHDYWw~s~skl~n~lp~~l~~~n 105 (230)
T COG1768 31 EKIKKHWRSKVSPEDIVLLPGDISWAM-----RLEEAEEDLRFIGDLPGTKYMIRGNHDYWWSSISKLNNALPPILFYLN 105 (230)
T ss_pred HHHHHHHHhcCChhhEEEecccchhhe-----echhhhhhhhhhhcCCCcEEEEecCCccccchHHHHHhhcCchHhhhc
Confidence 4455555542 2569999999999732 333444556778888888899999999975555666665542110000
Q ss_pred cceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHHHHHHHHH-
Q 023422 92 AYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKEQIKWLDA- 170 (282)
Q Consensus 92 ~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~- 170 (282)
..| ...++.+++.- +|.......+. +. ..+..+-.+++.-|+.
T Consensus 106 ~~f---~l~n~aI~G~R-------gW~s~~~~~e~----~t----------------------e~Deki~~RE~~RLrls 149 (230)
T COG1768 106 NGF---ELLNYAIVGVR-------GWDSPSFDSEP----LT----------------------EQDEKIFLREIGRLRLS 149 (230)
T ss_pred cce---eEeeEEEEEee-------cccCCCCCcCc----cc----------------------hhHHHHHHHHHHHHHHH
Confidence 001 12333333322 23221100000 00 0001122233334444
Q ss_pred HHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCcccc----CCCCeEEecc
Q 023422 171 VLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSID----THGIHHRVLE 243 (282)
Q Consensus 171 ~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~----~~~i~~~~~~ 243 (282)
..+..++...++|+|+|+||..... ....+.+.+.+. +|..|++||+|.-..-.. ..||.|..++
T Consensus 150 a~a~l~k~~~~fivM~HYPP~s~~~-------t~~~~sevlee~-rv~~~lyGHlHgv~~p~~~~s~v~Gi~y~Lva 218 (230)
T COG1768 150 ADAALPKGVSKFIVMTHYPPFSDDG-------TPGPFSEVLEEG-RVSKCLYGHLHGVPRPNIGFSNVRGIEYMLVA 218 (230)
T ss_pred HHHhcccCcCeEEEEEecCCCCCCC-------CCcchHHHHhhc-ceeeEEeeeccCCCCCCCCcccccCceEEEEe
Confidence 2334455668999999999886552 224677778877 499999999998753222 1356555443
No 34
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.42 E-value=1.9e-11 Score=109.62 Aligned_cols=93 Identities=8% Similarity=0.019 Sum_probs=57.8
Q ss_pred CCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCcccc---CCCCeEEeccccccCC-----C
Q 023422 179 NQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSID---THGIHHRVLEAALECP-----P 250 (282)
Q Consensus 179 ~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~---~~~i~~~~~~~~~~~~-----~ 250 (282)
+...|++.|......... ... -.+++ .. .+++|+.||.|....... .++...+..||+.... .
T Consensus 200 ~~fnIlv~Hq~~~~~~~~--~~i-----pe~ll-p~-~fDYValGHiH~~~~~p~~~~~~~~~V~ypGS~v~tSf~e~E~ 270 (405)
T TIGR00583 200 DWFNLLVLHQNHAAHTST--SFL-----PESFI-PD-FFDLVIWGHEHECLPDPVYNPSDGFYVLQPGSTVATSLTPGEA 270 (405)
T ss_pred CceEEEEeCceecCCCCc--ccC-----chhhh-hc-cCcEEEecccccccccccccCCCCceEEECCCccccccccccc
Confidence 456899999986433210 000 12233 23 378999999999754322 1233334455555431 2
Q ss_pred CCCceEEEEEeCCeEEEEecccccCccccc
Q 023422 251 GTDAFGHIDAYDDRLSLVGTGRMQSTDMCF 280 (282)
Q Consensus 251 ~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~ 280 (282)
..+++.+|++.++.+.++-....+.|.+.+
T Consensus 271 ~~Kgv~lVeI~~~~~~~~~IpL~~vRpf~~ 300 (405)
T TIGR00583 271 LPKHVFILNIKGRKFASKPIPLQTVRPFVM 300 (405)
T ss_pred CCCEEEEEEEcCCeeEEEEeeCCCcccEEE
Confidence 457899999998888888888887776654
No 35
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.42 E-value=7e-13 Score=104.12 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=53.6
Q ss_pred CeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEeccccccCC-CCCCceEEE
Q 023422 180 QKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECP-PGTDAFGHI 258 (282)
Q Consensus 180 ~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~~-~~~~~f~~v 258 (282)
...++++|..+.... +..+.+...+...+ ++++++||+|....... +++.+++.|+.+... ...++|.++
T Consensus 81 ~~~i~~~H~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~GH~H~~~~~~~-~~~~~~~~Gs~~~~~~~~~~~~~i~ 151 (156)
T PF12850_consen 81 GFKILLSHGHPYDVQ-------WDPAELREILSREN-VDLVLHGHTHRPQVFKI-GGIHVINPGSIGGPRHGDQSGYAIL 151 (156)
T ss_dssp TEEEEEESSTSSSST-------TTHHHHHHHHHHTT-SSEEEESSSSSEEEEEE-TTEEEEEE-GSSS-SSSSSEEEEEE
T ss_pred CCeEEEECCCCcccc-------cChhhhhhhhcccC-CCEEEcCCcccceEEEE-CCEEEEECCcCCCCCCCCCCEEEEE
Confidence 456888888765433 34455666777664 99999999999987665 888888888877653 347789999
Q ss_pred EEeC
Q 023422 259 DAYD 262 (282)
Q Consensus 259 ~~~~ 262 (282)
++++
T Consensus 152 ~~~~ 155 (156)
T PF12850_consen 152 DIED 155 (156)
T ss_dssp EETT
T ss_pred EEec
Confidence 9865
No 36
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.41 E-value=1.6e-11 Score=101.90 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=34.9
Q ss_pred HHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Q 023422 17 QRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYN 73 (282)
Q Consensus 17 ~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~ 73 (282)
+.+++. +||+|+++||+++. .. .+++.+.++..|+++++||||.+.
T Consensus 19 ~~l~~~-~pD~Vl~~GDi~~~------~~----~~~~~l~~l~~p~~~V~GNHD~~~ 64 (238)
T cd07397 19 KALHLL-QPDLVLFVGDFGNE------SV----QLVRAISSLPLPKAVILGNHDAWY 64 (238)
T ss_pred HHHhcc-CCCEEEECCCCCcC------hH----HHHHHHHhCCCCeEEEcCCCcccc
Confidence 455556 89999999999962 22 455566667789999999999854
No 37
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.41 E-value=8.2e-12 Score=104.77 Aligned_cols=192 Identities=13% Similarity=0.089 Sum_probs=99.8
Q ss_pred HHHHHHHHhhc-CCccEEEEcCCCCCCCCCCc---ccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcCCC
Q 023422 12 LQNAVQRWNNH-QKLKFVIHFGDIVDGFCPKD---QSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKISS 87 (282)
Q Consensus 12 l~~~~~~~~~~-~~~d~vi~~GDi~d~~~~~~---~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~~~ 87 (282)
.+.+++.+.+. .+||.|+++||++|...... ...+.+..+++.+.+.++|+++++||||.+. ...+.+..+..-
T Consensus 17 ~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~~~--~~~~~~~~gi~~ 94 (231)
T TIGR01854 17 TALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDFLI--GKRFAREAGMTL 94 (231)
T ss_pred HHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCchhh--hHHHHHHCCCEE
Confidence 34455555543 26999999999998432211 1123334445555555689999999999742 111222111100
Q ss_pred CCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHHHHHH
Q 023422 88 VDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKEQIKW 167 (282)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 167 (282)
.... ..+ ..++.+++++++. .+.. ....+....+.++... +...-..+......|
T Consensus 95 l~~~--~~~-~~~g~~ill~HGd---~~~~--~d~~y~~~r~~~r~~~-----------------~~~~~~~l~~~~r~~ 149 (231)
T TIGR01854 95 LPDP--SVI-DLYGQKVLLMHGD---TLCT--DDTAYQAFRAKVHQPW-----------------LQRLFLHLPLAVRVK 149 (231)
T ss_pred ECCC--EEE-EECCEEEEEEcCc---cccC--CCHHHHHHHHHHhCHH-----------------HHHHHHhCCHHHHHH
Confidence 0111 122 2467778777772 2211 1122222222221000 000001334455666
Q ss_pred HHHHHHHHhhC---CCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccC-C--CCeEEe
Q 023422 168 LDAVLQDATKL---NQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDT-H--GIHHRV 241 (282)
Q Consensus 168 l~~~l~~~~~~---~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~-~--~i~~~~ 241 (282)
+.+.+.....+ .++..++.+ +...+.+.+..++ +++++|||+|........ + ++.+++
T Consensus 150 l~~~~~~~s~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~-~~~~i~GHtH~~~~~~~~~~~~~~~~~~ 213 (231)
T TIGR01854 150 LARKIRAESRADKQMKSQDIMDV---------------NPAEVAAVMRRYG-VDRLIHGHTHRPAIHPLQADGQPATRIV 213 (231)
T ss_pred HHHHHHHHHHHhcCCCcchhhCC---------------CHHHHHHHHHHcC-CCEEEECCccCcceeecccCCCccEEEE
Confidence 77766554211 111222222 2245667777774 899999999999865541 1 567889
Q ss_pred ccccc
Q 023422 242 LEAAL 246 (282)
Q Consensus 242 ~~~~~ 246 (282)
+|.+.
T Consensus 214 lgdW~ 218 (231)
T TIGR01854 214 LGDWY 218 (231)
T ss_pred ECCCc
Confidence 99885
No 38
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.41 E-value=2.3e-11 Score=109.81 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=45.4
Q ss_pred HHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Q 023422 12 LQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYN 73 (282)
Q Consensus 12 l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~ 73 (282)
+.++++.+++. +||+||++||++|...+.......+..++..+...++|+++|+||||...
T Consensus 28 l~~l~~~i~~~-~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~I~GNHD~~~ 88 (407)
T PRK10966 28 LDWLLEQVQEH-QVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVVLAGNHDSVA 88 (407)
T ss_pred HHHHHHHHHhc-CCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEEEcCCCCChh
Confidence 55666777777 99999999999985444333334455666677777789999999999753
No 39
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.39 E-value=3.2e-11 Score=106.77 Aligned_cols=64 Identities=19% Similarity=0.315 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCc-ccHHHHHH-HHHHHHhcCCCEEEecCCCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKD-QSLEAVKK-VVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~-~~~~~~~~-~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
....++++++.+.+. ++|+|+++||++|...... ........ +++.+...++|+++++||||..
T Consensus 24 ~~~~l~~ii~~a~~~-~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 24 QLKFIKQAIEYSKAH-GITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLHVLVGNHDMY 89 (340)
T ss_pred HHHHHHHHHHHHHHc-CCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEccCCCcc
Confidence 346778888888888 9999999999998532222 22233333 4556766789999999999974
No 40
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.38 E-value=5.6e-11 Score=100.35 Aligned_cols=199 Identities=13% Similarity=0.089 Sum_probs=104.8
Q ss_pred CccEEEEcCCCCCCCCCCc---ccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcCCCCCCCcceEecCCC
Q 023422 24 KLKFVIHFGDIVDGFCPKD---QSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKISSVDGRAYYDFSPTP 100 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~---~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 100 (282)
++|.|+++||++|...+.. .....+..+++.+...++|+++++||||.... ..+.+..+..-.+. ...+. .+
T Consensus 32 ~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNHD~~~~--~~~~~~~g~~~l~~--~~~~~-~~ 106 (241)
T PRK05340 32 QADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNRDFLLG--KRFAKAAGMTLLPD--PSVID-LY 106 (241)
T ss_pred cCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCCchhhh--HHHHHhCCCEEeCC--cEEEE-EC
Confidence 7999999999998432221 12233344455555566899999999997421 12222222110011 12333 57
Q ss_pred CeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHHHHHHHHHHHHHHhhCCC
Q 023422 101 EYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKEQIKWLDAVLQDATKLNQ 180 (282)
Q Consensus 101 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~ 180 (282)
+.+++..++. .+. .....+....+.++... +...-..++.....++.+.+.....+..
T Consensus 107 g~~i~l~HGd---~~~--~~d~~y~~~r~~~r~~~-----------------~~~~~~~~p~~~~~~ia~~~~~~s~~~~ 164 (241)
T PRK05340 107 GQRVLLLHGD---TLC--TDDKAYQRFRRKVRNPW-----------------LQWLFLALPLSIRLRIAAKMRAKSKAAN 164 (241)
T ss_pred CEEEEEECCc---ccc--cCCHHHHHHHHHHhCHH-----------------HHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 7888888772 221 12233333333333110 0000123444555666666654321110
Q ss_pred --eEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccC-C--CCeEEeccccccCCCCCCce
Q 023422 181 --KVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDT-H--GIHHRVLEAALECPPGTDAF 255 (282)
Q Consensus 181 --~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~-~--~i~~~~~~~~~~~~~~~~~f 255 (282)
+..-++ -.+.+.+.+.+.+++ ++++++||+|........ + ++.+++++.+.. . .
T Consensus 165 ~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~~i~GH~H~~~~~~~~~~~~~~~~~~lgdw~~----~--~ 223 (241)
T PRK05340 165 QSKSLEIM--------------DVNPEAVAALMEKHG-VDTLIHGHTHRPAIHQLQAGGQPATRIVLGDWHE----Q--G 223 (241)
T ss_pred CCCccccc--------------CCCHHHHHHHHHHhC-CCEEEECcccCcceeeccCCCcceEEEEeCCCCC----C--C
Confidence 010000 023357778888885 899999999998654332 2 235788888742 2 3
Q ss_pred EEEEEeCCeEEEEec
Q 023422 256 GHIDAYDDRLSLVGT 270 (282)
Q Consensus 256 ~~v~~~~~~~~~~~~ 270 (282)
..+.++++.+.+..+
T Consensus 224 ~~~~~~~~~~~~~~~ 238 (241)
T PRK05340 224 SVLKVDADGVELIPF 238 (241)
T ss_pred eEEEEECCceEEEeC
Confidence 445666676766654
No 41
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.36 E-value=5.2e-11 Score=93.98 Aligned_cols=50 Identities=22% Similarity=0.204 Sum_probs=38.1
Q ss_pred cEEEEEeCcccCCCccccCCCCeEEeccccccCCCC-CCceEEEEEeCCeEE
Q 023422 216 CVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECPPG-TDAFGHIDAYDDRLS 266 (282)
Q Consensus 216 ~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~~~~-~~~f~~v~~~~~~~~ 266 (282)
.++++++||+|....... +++.+++.|+....... .++|.++++.++.++
T Consensus 106 ~~d~vi~GHtH~~~~~~~-~~~~~iNpGs~~~~~~~~~~~~~il~~~~~~~~ 156 (158)
T TIGR00040 106 GVDVLIFGHTHIPVAEEL-RGILLINPGSLTGPRNGNTPSYAILDVDKDKVT 156 (158)
T ss_pred CCCEEEECCCCCCccEEE-CCEEEEECCccccccCCCCCeEEEEEecCCeEE
Confidence 478999999999987666 78877776665544333 579999999887665
No 42
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.32 E-value=8.9e-11 Score=92.27 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=40.3
Q ss_pred HHHccCcEEEEEeCcccCCCccccCCCCeEEeccccccCC-CCCCceEEEEEeCCeEEEE
Q 023422 210 VIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECP-PGTDAFGHIDAYDDRLSLV 268 (282)
Q Consensus 210 ~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~~-~~~~~f~~v~~~~~~~~~~ 268 (282)
.+...+ ++++++||+|....... +++.+++.|+..... ...++|.++++.+ ++.++
T Consensus 97 ~~~~~~-~d~vi~GHtH~~~~~~~-~~~~~inpGs~~~~~~~~~~~~~i~~~~~-~~~~~ 153 (155)
T cd00841 97 LAKEGG-ADVVLYGHTHIPVIEKI-GGVLLLNPGSLSLPRGGGPPTYAILEIDD-KGEVE 153 (155)
T ss_pred hhhhcC-CCEEEECcccCCccEEE-CCEEEEeCCCccCcCCCCCCeEEEEEecC-CCcEE
Confidence 344443 78999999999987666 787777777665543 3566899999987 55544
No 43
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=1.8e-11 Score=103.89 Aligned_cols=63 Identities=17% Similarity=0.226 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC-CCEEEecCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN-GPAYHMIGNHCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~-~pv~~v~GNHD~~ 72 (282)
...|.++++.+.+. ++|+|+++||++|...+.....+.+..+++.+...+ +|+++++||||..
T Consensus 25 ~~~l~~l~~~~~~~-~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~ 88 (253)
T TIGR00619 25 KAFLDDLLEFAKAE-QIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISGNHDSA 88 (253)
T ss_pred HHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEccCCCCh
Confidence 34677778877787 899999999999965544444455666777777666 8999999999974
No 44
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.31 E-value=4.4e-11 Score=91.86 Aligned_cols=43 Identities=28% Similarity=0.488 Sum_probs=34.5
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCC-EEEecCCCCC
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGP-AYHMIGNHCL 71 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~p-v~~v~GNHD~ 71 (282)
++|+||++||+++. ...+.++.+.+.+.+++.+ +++++||||.
T Consensus 19 ~~D~vi~~GD~~~~-----~~~~~~~~~~~~l~~~~~~~~~~v~GNHD~ 62 (135)
T cd07379 19 DGDVLIHAGDLTER-----GTLEELQKFLDWLKSLPHPHKIVIAGNHDL 62 (135)
T ss_pred CCCEEEECCCCCCC-----CCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence 79999999999973 3455667777888877665 6889999996
No 45
>PRK09453 phosphodiesterase; Provisional
Probab=99.30 E-value=1.6e-10 Score=93.34 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCC-cccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPK-DQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~-~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
...++++++.+.+. ++|.++++||+++..... .........+.+.+++++.++++|+||||.
T Consensus 13 ~~~~~~~l~~~~~~-~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNhD~ 75 (182)
T PRK09453 13 LPATEKALELFAQS-GADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNCDS 75 (182)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccCCcc
Confidence 35677888888777 899999999999732111 011111345667777777899999999996
No 46
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.29 E-value=9.5e-11 Score=105.92 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
.+....|.++++.+.+. ++|+||++||++|...+...+...+..+++.++..++||++|+||||..
T Consensus 23 ~d~~~~f~~~l~~a~~~-~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~ 88 (390)
T COG0420 23 EDQKKAFDELLEIAKEE-KVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSP 88 (390)
T ss_pred HHHHHHHHHHHHHHHHc-cCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCch
Confidence 45677888899998888 8999999999999766665666666666677767779999999999974
No 47
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.28 E-value=4.4e-10 Score=90.30 Aligned_cols=64 Identities=13% Similarity=0.055 Sum_probs=43.7
Q ss_pred HHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEeccccccCC-----CCCCceEEEEEeCCeEEEEecc
Q 023422 206 EVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECP-----PGTDAFGHIDAYDDRLSLVGTG 271 (282)
Q Consensus 206 ~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~f~~v~~~~~~~~~~~~~ 271 (282)
.+.....+. .++++++||||....... +++.+++-||.+... ...++|.++++..+.+.++-+.
T Consensus 97 ~~~~~~~~~-~~dvii~GHTH~p~~~~~-~g~~viNPGSv~~~~~~~~~~~~~syail~~~~~~~~~~~~~ 165 (178)
T cd07394 97 SLAALQRQL-DVDILISGHTHKFEAFEH-EGKFFINPGSATGAFSPLDPNVIPSFVLMDIQGSKVVTYVYQ 165 (178)
T ss_pred HHHHHHHhc-CCCEEEECCCCcceEEEE-CCEEEEECCCCCCCCCCCCCCCCCeEEEEEecCCeEEEEEEE
Confidence 333333444 478999999999877666 788778878776431 1245899999987776554443
No 48
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.23 E-value=2e-10 Score=91.69 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=35.1
Q ss_pred EEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccC---CCCeEEeccccccC
Q 023422 183 VVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDT---HGIHHRVLEAALEC 248 (282)
Q Consensus 183 il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~---~~i~~~~~~~~~~~ 248 (282)
|+++|.|... ++.+. ++.++|+||+|..+..... +++..++++|++..
T Consensus 119 i~l~H~p~~~-----------------~~~~~-~~~~~lsGH~H~~~~~~~~~~~~~~~ei~v~S~s~~ 169 (171)
T cd07384 119 ILLTHIPLYR-----------------LLDTI-KPVLILSGHDHDQCEVVHSSKAGSVREITVKSFSWR 169 (171)
T ss_pred eeEECCccHH-----------------HHhcc-CceEEEeCcccCCeEEEecCCCCCceEEeeccchhh
Confidence 8999998321 34555 4889999999999776553 55878888887653
No 49
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.23 E-value=1.5e-10 Score=90.99 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=36.3
Q ss_pred EEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEeccccccC
Q 023422 183 VVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALEC 248 (282)
Q Consensus 183 il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~ 248 (282)
|+++|.|.. ..+.+++ +.++++||+|........+|+..++++|++..
T Consensus 107 ~~l~H~p~~-----------------~~~~~~~-~~~~l~GH~H~~~~~~~~~~~~e~~~~~~~~~ 154 (156)
T cd08165 107 ILLQHFPLY-----------------RLLQWLK-PRLVLSGHTHSFCEVTHPDGTPEVTVPSFSWR 154 (156)
T ss_pred eeeeCChHH-----------------HHHHhhC-CCEEEEcccCCCceeEEECCEEEEEEecceec
Confidence 889999831 1334443 67999999999877665699999999998764
No 50
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.21 E-value=5.2e-10 Score=90.11 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=36.8
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh-----cCCCEEEecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK-----FNGPAYHMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~-----~~~pv~~v~GNHD~ 71 (282)
+.+...++.. +||+||++||++|+.... ..+.+...++.+.. .++|+++|+||||.
T Consensus 32 r~~~~a~~~l-~PD~Vi~lGDL~D~G~~~--~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDI 92 (195)
T cd08166 32 KTYHLALNFV-QPDIVIFLGDLMDEGSIA--NDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDI 92 (195)
T ss_pred HHHHHHHhcc-CCCEEEEeccccCCCCCC--CHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCc
Confidence 3344445556 899999999999954322 23334444444443 23799999999998
No 51
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.16 E-value=1e-10 Score=95.58 Aligned_cols=54 Identities=22% Similarity=0.179 Sum_probs=40.4
Q ss_pred HHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEeccccccCCCCCCceEEEEEeCCeEE
Q 023422 205 NEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECPPGTDAFGHIDAYDDRLS 266 (282)
Q Consensus 205 ~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~~~~~~~f~~v~~~~~~~~ 266 (282)
+.+.+.+..++ |+.++|||+|....... +++.|++.|++..+. .++++..+...
T Consensus 177 ~~v~~~~~~~~-vd~vI~GH~Hr~ai~~i-~~~~yi~lGdW~~~~------s~~~v~~~~~~ 230 (237)
T COG2908 177 AAVADEARRHG-VDGVIHGHTHRPAIHNI-PGITYINLGDWVSEG------SILEVDDGGLE 230 (237)
T ss_pred HHHHHHHHHcC-CCEEEecCcccHhhccC-CCceEEecCcchhcc------eEEEEecCcEE
Confidence 45566677775 99999999999988777 779999999987332 35566555544
No 52
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.05 E-value=1e-08 Score=81.33 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=45.1
Q ss_pred cEEEEEeCcccCCCccccCCCCeEEeccccccCCCCCC-ceEEEEEeCCeEEEEeccccc
Q 023422 216 CVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECPPGTD-AFGHIDAYDDRLSLVGTGRMQ 274 (282)
Q Consensus 216 ~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~~~~~~-~f~~v~~~~~~~~~~~~~~~~ 274 (282)
.++++++||||....... +++.+++-||.+......+ +|.++++.+.++.+.......
T Consensus 109 ~~Dvli~GHTH~p~~~~~-~~i~~vNPGS~s~pr~~~~~sy~il~~~~~~~~~~~~~~~~ 167 (172)
T COG0622 109 GADVLIFGHTHKPVAEKV-GGILLVNPGSVSGPRGGNPASYAILDVDNLEVEVLFLERDR 167 (172)
T ss_pred CCCEEEECCCCcccEEEE-CCEEEEcCCCcCCCCCCCCcEEEEEEcCCCEEEEEEeeccc
Confidence 478999999999999877 8887777777766643344 899999999988877665443
No 53
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.04 E-value=2.8e-09 Score=81.13 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=28.5
Q ss_pred cCHHHHHHHHHccCcEEEEEeCcccCCCccc----cCCCCeEEec
Q 023422 202 WNCNEVMDVIHRYNCVKVCLAGHDHQGGHSI----DTHGIHHRVL 242 (282)
Q Consensus 202 ~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~----~~~~i~~~~~ 242 (282)
.+.+++.+.+.+++ ++++++||+|...... ..+++..+++
T Consensus 78 ~g~~~l~~~l~~~~-~~~vl~GH~H~~~~~~~~~~~~~~t~~~n~ 121 (129)
T cd07403 78 RGFEAFLDFIDRFR-PKLFIHGHTHLNYGYQLRIRRVGDTTVINA 121 (129)
T ss_pred cCHHHHHHHHHHHC-CcEEEEcCcCCCcCccccccccCCEEEEeC
Confidence 44567778888885 8999999999887755 2256654443
No 54
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=99.02 E-value=1.3e-09 Score=87.62 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=37.5
Q ss_pred HHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHH----HHHHHHHHhc------------------CCCEEEecCCC
Q 023422 12 LQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAV----KKVVNEFEKF------------------NGPAYHMIGNH 69 (282)
Q Consensus 12 l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~----~~~~~~l~~~------------------~~pv~~v~GNH 69 (282)
|+..++.+....+||.|+++||++++. .. +.+++ .++.+.+-.. +++++.|+|||
T Consensus 32 L~~~~~~~~~~l~Pd~V~fLGDLfd~~--w~-~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNH 108 (193)
T cd08164 32 LGHIVSMMQFWLKPDAVVVLGDLFSSQ--WI-DDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNH 108 (193)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccCCC--cc-cHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcc
Confidence 566667666655999999999999853 21 23333 3333333111 26899999999
Q ss_pred CC
Q 023422 70 CL 71 (282)
Q Consensus 70 D~ 71 (282)
|.
T Consensus 109 DI 110 (193)
T cd08164 109 DV 110 (193)
T ss_pred cC
Confidence 98
No 55
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.01 E-value=1.8e-09 Score=92.66 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC--CCEEEecCCCCCCCC
Q 023422 11 VLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN--GPAYHMIGNHCLYNL 74 (282)
Q Consensus 11 ~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~--~pv~~v~GNHD~~~~ 74 (282)
...+.+..+.+. .+|+|+++||++++ . ..+....+.+.++.+. .+++++.||||+...
T Consensus 61 ~~~~~~~~i~~~-~~DlivltGD~~~~--~---~~~~~~~~~~~L~~L~~~~gv~av~GNHd~~~~ 120 (284)
T COG1408 61 EKLALLIAIANE-LPDLIVLTGDYVDG--D---RPPGVAALALFLAKLKAPLGVFAVLGNHDYGVD 120 (284)
T ss_pred HHHHHHHHHHhc-CCCEEEEEeeeecC--C---CCCCHHHHHHHHHhhhccCCEEEEecccccccc
Confidence 344455555555 56999999999985 1 2233334444454443 479999999998643
No 56
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.98 E-value=4.8e-09 Score=78.96 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=31.3
Q ss_pred hhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 20 NNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 20 ~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
.+. ++++||++||++++.... ....+.. ...+.....|+++++||||
T Consensus 23 ~~~-~~~~vi~~GD~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~GNHD 69 (131)
T cd00838 23 AAE-KPDFVLVLGDLVGDGPDP--EEVLAAA-LALLLLLGIPVYVVPGNHD 69 (131)
T ss_pred ccc-CCCEEEECCcccCCCCCc--hHHHHHH-HHHhhcCCCCEEEeCCCce
Confidence 344 899999999999843221 1111111 3445556689999999999
No 57
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.96 E-value=1.1e-07 Score=81.94 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHhhcCCccEEEE-cCCCCCCCCCCccc----HHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 7 HSLLVLQNAVQRWNNHQKLKFVIH-FGDIVDGFCPKDQS----LEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~~d~vi~-~GDi~d~~~~~~~~----~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
..+.++..+++.++++ .++.+++ +||+++|....... ......+.+.++.++.. ++++||||+.
T Consensus 27 gg~~~l~~~i~~~r~~-~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln~~g~d-~~~lGNHe~d 95 (277)
T cd07410 27 GGLARVATLIKKARAE-NPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMNALGYD-AGTLGNHEFN 95 (277)
T ss_pred cCHHHHHHHHHHHHhc-CCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHHhcCCC-EEeecccCcc
Confidence 3467889999999887 7888776 99999752100000 00113466677777554 6677999974
No 58
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.90 E-value=4.7e-09 Score=87.04 Aligned_cols=38 Identities=21% Similarity=0.127 Sum_probs=28.4
Q ss_pred HHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEecccc
Q 023422 206 EVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAA 245 (282)
Q Consensus 206 ~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~ 245 (282)
.+.+.+... +++++++||+|....... +++.+++.|++
T Consensus 180 ~~~~~~~~~-~~~~~i~GH~H~~~~~~~-~~~~~~n~G~W 217 (217)
T cd07398 180 AVARLARRK-GVDGVICGHTHRPALHEL-DGKLYINLGDW 217 (217)
T ss_pred HHHHHHHhc-CCCEEEECCCCCCCeEEE-CCEEEEECCCC
Confidence 445555566 489999999999987666 67777777763
No 59
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.89 E-value=8.3e-08 Score=81.57 Aligned_cols=50 Identities=6% Similarity=-0.087 Sum_probs=34.9
Q ss_pred CeEEEEEeeCCCCCCC-CCcc---------------cccCHHHHHHHHHccCcEEEEEeCcccCCCc
Q 023422 180 QKVVVCCHVPLDPGSA-SPEA---------------LLWNCNEVMDVIHRYNCVKVCLAGHDHQGGH 230 (282)
Q Consensus 180 ~~~il~~H~p~~~~~~-~~~~---------------~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~ 230 (282)
..-|+++|.+|..... .+.. .....+.+.+++.... ++++|+||.|....
T Consensus 165 ~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lk-Pryhf~gH~H~~f~ 230 (262)
T cd00844 165 PIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLK-PRYWFSAHLHVKFA 230 (262)
T ss_pred CCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhC-CCEEEEecCCcccc
Confidence 4679999999876443 1100 0123467788888884 89999999998544
No 60
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.84 E-value=8.2e-08 Score=76.49 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhc-CCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNH-QKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~-~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
....+.+++.+++. .++|.|+++||+++. ...... .+.+++++.|+++|+||||.
T Consensus 26 ~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~-----~~~~~~---~~~l~~~~~~~~~v~GNHD~ 81 (168)
T cd07390 26 EEMDEALIRNWNETVGPDDTVYHLGDFSFG-----GKAGTE---LELLSRLNGRKHLIKGNHDS 81 (168)
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEeCCCCCC-----CChHHH---HHHHHhCCCCeEEEeCCCCc
Confidence 44556677777763 478999999999973 222222 55566677799999999996
No 61
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.79 E-value=4.9e-07 Score=77.08 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhcCCcc-EEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhh
Q 023422 8 SLLVLQNAVQRWNNHQKLK-FVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLL 83 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d-~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l 83 (282)
.+.++..+++.++++ .++ +++.+||++++.... ....-+.+.+.++.++. -++++||||+.. ....+.+++
T Consensus 22 G~~rl~~~i~~~r~~-~~~~l~l~~GD~~~g~~~~--~~~~g~~~~~~l~~l~~-d~~~~GNHefd~-g~~~l~~~~ 93 (257)
T cd07406 22 GAARFATLRKQLRKE-NPNTLVLFSGDVLSPSLLS--TATKGKQMVPVLNALGV-DLACFGNHEFDF-GEDQLQKRL 93 (257)
T ss_pred CHHHHHHHHHHHHhc-CCCEEEEECCCccCCccch--hhcCCccHHHHHHhcCC-cEEeeccccccc-CHHHHHHHH
Confidence 467889999998887 667 899999999753111 11111345566666643 466899999842 333444433
No 62
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.79 E-value=4.7e-07 Score=76.89 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHhhcCCcc-EEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 7 HSLLVLQNAVQRWNNHQKLK-FVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~~d-~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
..+.++..+++.++++ .++ +++.+||++++..... ......+.+.+..++ ..++++||||+.
T Consensus 20 ~g~~~l~~~v~~~~~~-~~~~l~v~~GD~~~~~~~~~--~~~~~~~~~~l~~~g-~d~~~~GNHe~d 82 (252)
T cd00845 20 GGAARLATLIKEERAE-NENTLLLDAGDNFDGSPPST--ATKGEANIELMNALG-YDAVTIGNHEFD 82 (252)
T ss_pred CCHHHHHHHHHHHHhc-CCCeEEEeCCccCCCccchh--ccCCcHHHHHHHhcC-CCEEeecccccc
Confidence 4567889999999988 677 7789999998542211 122234556666654 455678999984
No 63
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.73 E-value=8.3e-08 Score=89.15 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=26.6
Q ss_pred cEEEEEeCcccCCCccccCCCCeEEeccccccC
Q 023422 216 CVKVCLAGHDHQGGHSIDTHGIHHRVLEAALEC 248 (282)
Q Consensus 216 ~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~ 248 (282)
.++++++||.|....... +|+.+++.+++...
T Consensus 440 ~Pdv~~~GH~H~~~~~~~-~g~~~IN~gsf~~~ 471 (504)
T PRK04036 440 VPDIFHTGHVHINGYGKY-RGVLLINSGTWQAQ 471 (504)
T ss_pred CCCEEEeCCCCccceEEE-CCEEEEECCccccc
Confidence 358999999999877666 88989999998864
No 64
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=98.70 E-value=4.7e-08 Score=80.59 Aligned_cols=54 Identities=24% Similarity=0.231 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+..|.++++.+....++|.++++||+++.. + ... .+++.+.. .++++|.||||.
T Consensus 13 ~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g-~--~~~----~~~~~l~~--~~~~~v~GNhe~ 66 (207)
T cd07424 13 YSLLQKALDAVGFDPARDRLISVGDLIDRG-P--ESL----ACLELLLE--PWFHAVRGNHEQ 66 (207)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEeCCcccCC-C--CHH----HHHHHHhc--CCEEEeECCChH
Confidence 457777777765433689999999999832 1 122 33344433 368999999996
No 65
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.64 E-value=1.9e-07 Score=82.70 Aligned_cols=92 Identities=21% Similarity=0.160 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh-----cCCCEEEecCCCCCCCCC------hhhh
Q 023422 11 VLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK-----FNGPAYHMIGNHCLYNLP------RHML 79 (282)
Q Consensus 11 ~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~-----~~~pv~~v~GNHD~~~~~------~~~~ 79 (282)
-|++.++......+||.++++||++|+. +-.+.++|..-.+++++ ..++++.++||||..... .+++
T Consensus 80 ~lrr~f~~~~~~lkPdvvffLGDLfDeG--~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDIGf~~~~~~~~i~Rf 157 (410)
T KOG3662|consen 80 YLRRSFDMSQWRLKPDVVFFLGDLFDEG--QWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDIGFGNELIPEWIDRF 157 (410)
T ss_pred HHHHHHHHHHhccCCCEEEEeccccccC--ccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCccccccccccchhHHHHH
Confidence 4555666555544999999999999832 12344445444444544 247999999999985322 1344
Q ss_pred hhhhcCCCCCCCcceEecCCCCeEEEEEcCee
Q 023422 80 LPLLKISSVDGRAYYDFSPTPEYRFVVLDGYD 111 (282)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~i~l~~~~ 111 (282)
.+.++.. ...+. .++..++.+++..
T Consensus 158 e~~fg~~------~r~f~-v~~~tf~~~d~~~ 182 (410)
T KOG3662|consen 158 ESVFGPT------ERRFD-VGNLTFVMFDSNA 182 (410)
T ss_pred HHhhcch------hhhhc-cCCceeEEeeehh
Confidence 4555421 12333 6888888888743
No 66
>PHA02239 putative protein phosphatase
Probab=98.64 E-value=3.7e-08 Score=82.53 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhcC-CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQ-KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~-~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
...|.++++.+.... ..|.+|++||++|.. ..+.+.++.+++.+. ...++++++||||.
T Consensus 13 ~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG---~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~ 72 (235)
T PHA02239 13 YQKLLTIMDKINNERKPEETIVFLGDYVDRG---KRSKDVVNYIFDLMS-NDDNVVTLLGNHDD 72 (235)
T ss_pred HHHHHHHHHHHhhcCCCCCEEEEecCcCCCC---CChHHHHHHHHHHhh-cCCCeEEEECCcHH
Confidence 456788888886542 359999999999843 234455555555433 23589999999996
No 67
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.62 E-value=5.4e-07 Score=76.16 Aligned_cols=63 Identities=21% Similarity=0.302 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhc----CCccEEEEcCCCCCCCCCC---c------ccHHHHHHHHHHHHhcC--CCEEEecCCCCCCC
Q 023422 11 VLQNAVQRWNNH----QKLKFVIHFGDIVDGFCPK---D------QSLEAVKKVVNEFEKFN--GPAYHMIGNHCLYN 73 (282)
Q Consensus 11 ~l~~~~~~~~~~----~~~d~vi~~GDi~d~~~~~---~------~~~~~~~~~~~~l~~~~--~pv~~v~GNHD~~~ 73 (282)
.++.+++.++.. .++|.||++||+++..... . ...+.++.+.+.+.++. +||++++||||...
T Consensus 18 ~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 18 AFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSHIKIIIIPGNHDAVR 95 (243)
T ss_pred HHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccCCeEEEeCCCCCccc
Confidence 344455554443 1569999999999853110 0 11233455666666653 79999999999853
No 68
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.61 E-value=1.1e-05 Score=68.24 Aligned_cols=175 Identities=15% Similarity=0.131 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcC--
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKI-- 85 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~-- 85 (282)
....+.+.+..+.++.++|++|..||...|..+. -....+.|..++.-++.+ |||++... ++.+++..
T Consensus 13 G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl------~~~~~~~L~~~G~D~iTl-GNH~fD~g---el~~~l~~~~ 82 (255)
T cd07382 13 GRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGI------TPKIAKELLSAGVDVITM-GNHTWDKK---EILDFIDEEP 82 (255)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCccccCCCCC------CHHHHHHHHhcCCCEEEe-cccccCcc---hHHHHHhcCc
Confidence 3456777788777654789999999999753222 146677777777777666 99998432 23332211
Q ss_pred --------CC-CCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCccccccccccc
Q 023422 86 --------SS-VDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMF 156 (282)
Q Consensus 86 --------~~-~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
+. .++.+|..+. .++.++-.++-.. ....+
T Consensus 83 ~~l~~aN~~~~~pg~~~~i~~-~~G~kIaVigl~g--~~~~~-------------------------------------- 121 (255)
T cd07382 83 RLLRPANYPPGTPGRGYGVVE-VNGKKIAVINLMG--RVFMP-------------------------------------- 121 (255)
T ss_pred CceEeeecCCCCCCCCeEEEE-ECCEEEEEEEEec--ccCCC--------------------------------------
Confidence 10 1223344333 3555554443210 00110
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccc--cC
Q 023422 157 NGAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSI--DT 234 (282)
Q Consensus 157 ~~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~--~~ 234 (282)
.+ +..++-+.+.+++..+..+.+|+.+|..... ...++...+ -++|++++-||+|....-. ..
T Consensus 122 --~~-~~P~~~~~~~v~~lk~~~D~IIV~~H~g~ts----------Ek~ala~~l--dg~VdvIvGtHTHv~t~d~~il~ 186 (255)
T cd07382 122 --PL-DNPFRAADELLEELKEEADIIFVDFHAEATS----------EKIALGWYL--DGRVSAVVGTHTHVQTADERILP 186 (255)
T ss_pred --cC-CCHHHHHHHHHHHHhcCCCEEEEEECCCCCH----------HHHHHHHhC--CCCceEEEeCCCCccCCccEEee
Confidence 01 1123345555555543456889999985210 001122111 1249999999999885433 34
Q ss_pred CCCeEEeccccccC
Q 023422 235 HGIHHRVLEAALEC 248 (282)
Q Consensus 235 ~~i~~~~~~~~~~~ 248 (282)
+|+-|++-.++++.
T Consensus 187 ~gTa~itd~Gm~G~ 200 (255)
T cd07382 187 GGTAYITDVGMTGP 200 (255)
T ss_pred CCeEEEecCccccC
Confidence 78877777666553
No 69
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=98.59 E-value=6.6e-07 Score=74.37 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
.++.|.++++.+...++.|.++++||++|.. ..+.+.+ +.+.+. .+++|.||||.
T Consensus 28 ~~~~L~~lL~~i~~~~~~D~li~lGDlvDrG---p~s~~vl----~~l~~~--~~~~v~GNHE~ 82 (218)
T PRK11439 28 CFEQLMRKLRHCRFDPWRDLLISVGDLIDRG---PQSLRCL----QLLEEH--WVRAVRGNHEQ 82 (218)
T ss_pred CHHHHHHHHHhcCCCcccCEEEEcCcccCCC---cCHHHHH----HHHHcC--CceEeeCchHH
Confidence 3578888888886543679999999999832 2233333 344333 46789999996
No 70
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.58 E-value=8.5e-06 Score=69.75 Aligned_cols=61 Identities=11% Similarity=0.169 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhcCCccEE-EEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFV-IHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~v-i~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
.+.++..+++.+++...++.+ +.+||++++... ........+.+.++.+ ++.++.||||+.
T Consensus 34 G~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~--~~~~~g~~~~~~l~~~--g~da~~GNHefd 95 (264)
T cd07411 34 GFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGE--ALYTRGQAMVDALNAL--GVDAMVGHWEFT 95 (264)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChH--HhhcCChhHHHHHHhh--CCeEEecccccc
Confidence 367888888888765357776 569999975311 0111123455556555 444444999985
No 71
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.56 E-value=1e-05 Score=68.99 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhh
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPL 82 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~ 82 (282)
.+.++..+++.+++. +.++++.+||.++|.. . .....-..+.+.+..++..+ +++||||+. ...+.+.+.
T Consensus 22 g~~~l~~~i~~~~~~-~~~l~l~~GD~~~gs~-~-~~~~~g~~~~~~ln~~g~d~-~~~GNHefd-~G~~~l~~~ 91 (257)
T cd07408 22 GYAKLATYKKEMNKL-DNDLLVDAGDAIQGLP-I-SDLDKGETIIKIMNAVGYDA-VTPGNHEFD-YGLDRLKEL 91 (257)
T ss_pred cHHHHHHHHHHHHhc-CCEEEEeCCCcCCCch-h-hhhcCCcHHHHHHHhcCCcE-Ecccccccc-CCHHHHHHH
Confidence 366788888888776 6799999999998531 1 01111134566666666566 467999984 333344433
No 72
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=98.54 E-value=5.5e-07 Score=76.77 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhc-----CCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC-CCEEEecCCCCC
Q 023422 8 SLLVLQNAVQRWNNH-----QKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN-GPAYHMIGNHCL 71 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~-----~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~-~pv~~v~GNHD~ 71 (282)
.+..|+++++.+... ...+.+|++||++|.. ..+.+.++.+.+...... ..++++.||||.
T Consensus 13 ~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRG---PdS~eVld~L~~l~~~~~~~~vv~LrGNHE~ 79 (304)
T cd07421 13 YISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRG---PETRKVIDFLISLPEKHPKQRHVFLCGNHDF 79 (304)
T ss_pred CHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCC---CCHHHHHHHHHHhhhcccccceEEEecCChH
Confidence 356777777776543 1356899999999842 234445554444322221 258899999996
No 73
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.54 E-value=1.3e-05 Score=69.58 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
.+.++..+++.+.++....+++.+||++.|..... ....-+.+.+.+++++..+ .++||||+.
T Consensus 26 G~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s-~~~~g~~~~~~~n~~g~Da-~t~GNHefd 88 (288)
T cd07412 26 GAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFES-ALLQDEPTIEALNAMGVDA-SAVGNHEFD 88 (288)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEeCCcccccccchh-hcccCCcHHHHHHhhCCee-eeecccccc
Confidence 46788899998887623358999999997421110 0000124556666665554 667999984
No 74
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=98.53 E-value=7.3e-07 Score=74.93 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhc---------CCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNH---------QKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~---------~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+..|.++++.+.-. ++.|.++++||++|.. ..+.+.++.+.+... ...++++.||||.
T Consensus 13 ~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG---~~s~evl~~l~~l~~--~~~~~~v~GNHE~ 79 (234)
T cd07423 13 YDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRG---PDSPEVLRLVMSMVA--AGAALCVPGNHDN 79 (234)
T ss_pred HHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCC---CCHHHHHHHHHHHhh--CCcEEEEECCcHH
Confidence 56788888877321 1368999999999832 234455554443322 2368899999996
No 75
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=98.49 E-value=1.7e-06 Score=71.84 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
.+..|+++++.+...++.|.++++||++|.. ..+.+.+ +.+.+ ..+++|.||||.
T Consensus 26 ~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG---~~~~~~l----~~l~~--~~~~~v~GNHE~ 80 (218)
T PRK09968 26 EYQLLQSRLHQLSFCPETDLLISVGDNIDRG---PESLNVL----RLLNQ--PWFISVKGNHEA 80 (218)
T ss_pred CHHHHHHHHHhcCCCCCCCEEEECCCCcCCC---cCHHHHH----HHHhh--CCcEEEECchHH
Confidence 3567888888775333689999999999832 1223333 33333 257899999996
No 76
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.47 E-value=8.3e-06 Score=70.46 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhcCCcc-EEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLK-FVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d-~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
.+.++...++.+.+. .++ +++.+||.+.|.... +...-+...+.++.++..+. ++||||+.
T Consensus 33 G~ar~~~~v~~~r~~-~~~~l~ld~GD~~~gs~~~--~~~~g~~~~~~ln~~g~D~~-~lGNHefd 94 (281)
T cd07409 33 GFARVATLVKELRAE-NPNVLFLNAGDAFQGTLWY--TLYKGNADAEFMNLLGYDAM-TLGNHEFD 94 (281)
T ss_pred CHHHHHHHHHHHHhc-CCCEEEEeCCCCCCCcchh--hhcCChHHHHHHHhcCCCEE-Eecccccc
Confidence 467888889988876 566 566699999853111 11112345566777766655 56999985
No 77
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.40 E-value=1.7e-05 Score=81.14 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhcCCccEEEE-cCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIH-FGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~-~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
...++...++.+.+. .++.+++ +||+++|. .. ........+.+.++.++. -++++||||+.
T Consensus 675 g~~r~~~~i~~~r~~-~~~~l~ld~GD~~~gs-~~-~~~~~g~~~~~~ln~lg~-d~~~~GNHEfd 736 (1163)
T PRK09419 675 GAAKRVTKIKEVKEE-NPNTILVDAGDVYQGS-LY-SNLLKGLPVLKMMKEMGY-DASTFGNHEFD 736 (1163)
T ss_pred CHHHHHHHHHHHHhh-CCCeEEEecCCCCCCc-ch-hhhcCChHHHHHHhCcCC-CEEEecccccc
Confidence 356788888888877 7888766 99999853 11 011112345566666533 35599999985
No 78
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.33 E-value=1.3e-06 Score=69.75 Aligned_cols=59 Identities=17% Similarity=0.086 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHH-HHHHHhcCCCEEEecCCCCC
Q 023422 10 LVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKV-VNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 10 ~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~-~~~l~~~~~pv~~v~GNHD~ 71 (282)
+.++++.+.+.+. +||.||++||++++.... .......+ ...+...++|+++++||||.
T Consensus 28 ~~~~~l~~~~~~~-~~d~lii~GDl~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~GNHD~ 87 (172)
T cd07391 28 DTLERLDRLIEEY-GPERLIILGDLKHSFGGL--SRQEFEEVAFLRLLAKDVDVILIRGNHDG 87 (172)
T ss_pred HHHHHHHHHHHhc-CCCEEEEeCccccccccc--CHHHHHHHHHHHhccCCCeEEEEcccCcc
Confidence 5666777777777 899999999999754222 22222222 22333355799999999997
No 79
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.32 E-value=0.00014 Score=62.89 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhc----CCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 8 SLLVLQNAVQRWNNH----QKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~----~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
.+.++..+++.+.+. ...-+++.+||++.|. +.. ....-....+.++.++.-+. ++||||+.
T Consensus 22 G~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs-~~~-~~~~g~~~~~~~n~~g~Da~-~~GNHEfD 87 (285)
T cd07405 22 GLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGV-PES-DLQDAEPDFRGMNLVGYDAM-AVGNHEFD 87 (285)
T ss_pred cHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCc-hhH-HhcCcchHHHHHHhhCCcEE-eecccccc
Confidence 466778888877643 2446899999999642 110 00111234566666655555 55999985
No 80
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=98.23 E-value=3.8e-05 Score=69.60 Aligned_cols=93 Identities=9% Similarity=0.078 Sum_probs=51.2
Q ss_pred CCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCC--CeEEeccccccCC------
Q 023422 178 LNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHG--IHHRVLEAALECP------ 249 (282)
Q Consensus 178 ~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~--i~~~~~~~~~~~~------ 249 (282)
..+..+++.|..-.... +...+ .+ ++|-.+ .+++++||-|....-...+. --|+..++++-.+
T Consensus 209 ~dWFNllvlHQNr~~h~--~tn~l--pE---~flp~F--~DlviWGHEHEC~i~p~~n~~~~F~i~QPGSsVaTSL~~gE 279 (646)
T KOG2310|consen 209 DDWFNLLVLHQNRSKHR--PTNFL--PE---QFLPDF--LDLVIWGHEHECKIDPQYNAIQGFYILQPGSSVATSLSPGE 279 (646)
T ss_pred ccceeeEEEeecccCCC--CcccC--cH---hHhhhh--hhheeeccccccccCcccccccceeeecCCCccccccCccc
Confidence 34567888887632111 11111 12 234444 57999999998754333222 2345565544331
Q ss_pred CCCCceEEEEEeCCeEEEEecccccCcccc
Q 023422 250 PGTDAFGHIDAYDDRLSLVGTGRMQSTDMC 279 (282)
Q Consensus 250 ~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~ 279 (282)
...+...+++|.+.+...+--...+-|.+-
T Consensus 280 a~~Khv~lL~Ikg~~~~l~~IpL~TVRpf~ 309 (646)
T KOG2310|consen 280 AKPKHVGLLRIKGRKFKLEKIPLRTVRPFV 309 (646)
T ss_pred ccCceEEEEEecCCcccccccccceeccee
Confidence 223356688998877777666666666543
No 81
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.19 E-value=0.00029 Score=59.99 Aligned_cols=178 Identities=13% Similarity=0.117 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCCh-hhh---hhhhc
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPR-HML---LPLLK 84 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~-~~~---~~~l~ 84 (282)
.+.+...+..+.++.++|++|..||.+.+.... -....+.|...+..++.+ |||.+..... ..+ .+.++
T Consensus 15 r~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi------~~~~~~~L~~~GvDviT~-GNH~~Dkge~~~~i~~~~~~lr 87 (266)
T TIGR00282 15 RKIVKNNLPQLKSKYQADLVIANGENTTHGKGL------TLKIYEFLKQSGVNYITM-GNHTWFQKLILDVVINQKDLVR 87 (266)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCC------CHHHHHHHHhcCCCEEEc-cchhccCcHHHHHHhccccccc
Confidence 567788888888765799999999999743211 145667777888888887 8999843211 001 11222
Q ss_pred CCC----CCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCC
Q 023422 85 ISS----VDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAV 160 (282)
Q Consensus 85 ~~~----~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (282)
... .++..+..+. .++.++-.++-.. ..+..+. .+
T Consensus 88 panyp~~~pG~g~~i~~-~nG~kiaVinl~G-~~fm~~~---------------------------------------~~ 126 (266)
T TIGR00282 88 PLNFDTSFAGKGSLVFE-FNGAKIAVTNLQG-TSVNLPF---------------------------------------KT 126 (266)
T ss_pred cCCCCCCCCCCCcEEEE-ECCEEEEEEECCC-cccCCcc---------------------------------------cc
Confidence 111 1233444443 4555544444311 0111000 00
Q ss_pred CHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCc--cccCCCCe
Q 023422 161 GKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGH--SIDTHGIH 238 (282)
Q Consensus 161 ~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~--~~~~~~i~ 238 (282)
+.-++.+++.+.+.++..+.+||..|..-. ..+.....+..- +|.+|+.-|+|.... +...+|+-
T Consensus 127 -~~Pf~~~d~~i~~lk~~~d~IIVd~Haeat-----------sEK~a~~~~ldg-~vsaVvGtHtHV~TaD~~il~~gta 193 (266)
T TIGR00282 127 -TNPFKVLKELINMLKKDCDLIFVDFHAETT-----------SEKNAFGMAFDG-YVTAVVGTHTHVPTADLRILPKGTA 193 (266)
T ss_pred -CCHHHHHHHHHHhhhcCCCEEEEEeCCCCH-----------HHHHHHHHHhCC-CccEEEeCCCCCCCCcceeCCCCCE
Confidence 122234555555554344578888897521 012223333334 499999999997654 33447887
Q ss_pred EEecccccc
Q 023422 239 HRVLEAALE 247 (282)
Q Consensus 239 ~~~~~~~~~ 247 (282)
|++=.++++
T Consensus 194 yitD~Gm~G 202 (266)
T TIGR00282 194 YITDVGMTG 202 (266)
T ss_pred EEecCCccc
Confidence 877555554
No 82
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=98.17 E-value=8.6e-06 Score=62.12 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=37.8
Q ss_pred HHHHHHHHhhcC-CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 12 LQNAVQRWNNHQ-KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 12 l~~~~~~~~~~~-~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
=..++..|++.- .-|.|.++||++.+.+. -..+.+.++.++..+..|+||||-+
T Consensus 32 d~vil~N~nntv~p~D~lwhLGDl~~~~n~-------~~~a~~IlerLnGrkhlv~GNhDk~ 86 (186)
T COG4186 32 DEVILSNWNNTVGPDDVLWHLGDLSSGANR-------ERAAGLILERLNGRKHLVPGNHDKC 86 (186)
T ss_pred hHHHHHhHHhcCCccceEEEecccccccch-------hhHHHHHHHHcCCcEEEeeCCCCCC
Confidence 344566777643 44889999999975322 2345556667788889999999963
No 83
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.15 E-value=0.00026 Score=67.06 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhc----CCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 8 SLLVLQNAVQRWNNH----QKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~----~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
.+.++..+++.+.+. ...-+++.+||++.|. +.. ....-....+.++.++.-+. ++||||+.
T Consensus 56 G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs-~~s-~~~~g~~~i~~mN~~g~Da~-tlGNHEFD 121 (551)
T PRK09558 56 GLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGV-PES-DLQDAEPDFRGMNLIGYDAM-AVGNHEFD 121 (551)
T ss_pred cHHHHHHHHHHHHHHhhccCCCEEEEcCCccccce-Ehh-hhcCCchhHHHHhcCCCCEE-cccccccC
Confidence 456777777776532 2346799999999752 110 00011234566666655554 45999984
No 84
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.13 E-value=0.00026 Score=61.12 Aligned_cols=61 Identities=16% Similarity=0.325 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHH-ccCcEE-EEEeCcccCCCccccCCCC
Q 023422 167 WLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIH-RYNCVK-VCLAGHDHQGGHSIDTHGI 237 (282)
Q Consensus 167 wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~-~~~~v~-~~~~GH~H~~~~~~~~~~i 237 (282)
|+.+.+++ +..+.+|+++|....... ......+.+. ..+.+. +++.||+|........+++
T Consensus 178 ~v~~~l~~--~~~DvIIvlsH~G~~~d~--------~~~~~~~~la~~~~~id~~Ii~GHsH~~~~~~~~~~~ 240 (282)
T cd07407 178 WFQDAINN--EDVDLILVLGHMPVRDDA--------EFKVLHDAIRKIFPDTPIQFLGGHSHVRDFTQYDSSS 240 (282)
T ss_pred HHHHHHHh--cCCCEEEEEeCCCCCCCc--------cHHHHHHHHHHhCCCCCEEEEeCCcccccceeccCcE
Confidence 66665653 245789999999865442 1112222233 344455 7999999976443332443
No 85
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=98.08 E-value=0.00012 Score=67.66 Aligned_cols=72 Identities=22% Similarity=0.342 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCC------------CcccccCHHHHHHHHHccCcE--EEEEeC
Q 023422 158 GAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSAS------------PEALLWNCNEVMDVIHRYNCV--KVCLAG 223 (282)
Q Consensus 158 ~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~------------~~~~~~~~~~~~~~l~~~~~v--~~~~~G 223 (282)
..++++|++||++.|.+.. ....||++-.|+...... ........+++.+.|.+.+ + .++|+|
T Consensus 296 ~mLG~~Q~~wL~~~L~~s~--a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~-~~~vV~LSG 372 (453)
T PF09423_consen 296 TMLGEEQWDWLEDWLASSQ--ATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESG-IRNVVFLSG 372 (453)
T ss_dssp -SS-HHHHHHHHHHHHH----SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT----EEEEE-
T ss_pred CcCCHHHHHHHHHHHhcCC--CcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhC-CCCEEEEec
Confidence 4689999999999999874 456777777766543211 1111223467888887764 4 489999
Q ss_pred cccCCCccc
Q 023422 224 HDHQGGHSI 232 (282)
Q Consensus 224 H~H~~~~~~ 232 (282)
..|......
T Consensus 373 DvH~~~~~~ 381 (453)
T PF09423_consen 373 DVHASAASR 381 (453)
T ss_dssp SSSSEEEEE
T ss_pred Ccchheeee
Confidence 999876544
No 86
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.07 E-value=1.1e-05 Score=67.10 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 10 LVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 10 ~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+.++++.+.+.+. ++|.||++||+++..... ..++.+.+.++.+..++++|+||||-
T Consensus 45 ~~l~rl~~li~~~-~~d~vIi~GDl~h~~~~~----~~~~~~~~~l~~~~~~v~~V~GNHD~ 101 (225)
T TIGR00024 45 EIIERALSIADKY-GIEALIINGDLKHEFKKG----LEWRFIREFIEVTFRDLILIRGNHDA 101 (225)
T ss_pred HHHHHHHHHHhhc-CCCEEEEcCccccccCCh----HHHHHHHHHHHhcCCcEEEECCCCCC
Confidence 4566666666666 899999999999743221 45556666666666799999999996
No 87
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.04 E-value=0.0004 Score=67.70 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccH------------HHHHHHHHHHHhcCCCEEEecCCCCCCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSL------------EAVKKVVNEFEKFNGPAYHMIGNHCLYNLP 75 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~------------~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~ 75 (282)
.+.++..+++.+.++..--+++.+||++.|-..-+... ..-.-+.+.+..++ .=....||||+. +.
T Consensus 67 Glar~AtlI~~~R~e~~ntlllD~GD~iqGspl~~~~~~~~~~~~~~~~~~~~~p~i~~mN~lg-yDa~tlGNHEFd-yG 144 (780)
T PRK09418 67 GLVQTATLVNKAREEAKNSVLFDDGDALQGTPLGDYVANKINDPKKPVDPSYTHPLYRLMNLMK-YDVISLGNHEFN-YG 144 (780)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEECCCCCCCchHHHHHhhcccccccccccccchHHHHHHhccC-CCEEeccccccc-cC
Confidence 46678888888876523468999999997521100000 00113445555553 445789999973 34
Q ss_pred hhhhhhhh
Q 023422 76 RHMLLPLL 83 (282)
Q Consensus 76 ~~~~~~~l 83 (282)
.+.+.+.+
T Consensus 145 ~d~L~~~l 152 (780)
T PRK09418 145 LDYLNKVI 152 (780)
T ss_pred HHHHHHHH
Confidence 43444433
No 88
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=98.00 E-value=1.8e-05 Score=71.18 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=36.4
Q ss_pred CccEEEEcCCCCCCCCCC---------cccHHHHHHHHHHHHhcC--CCEEEecCCCCCC
Q 023422 24 KLKFVIHFGDIVDGFCPK---------DQSLEAVKKVVNEFEKFN--GPAYHMIGNHCLY 72 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~---------~~~~~~~~~~~~~l~~~~--~pv~~v~GNHD~~ 72 (282)
+...++++||++||..-. ..-.++++.+.+.|...+ +.|+.+|||||.-
T Consensus 262 ~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~vp~~I~v~i~PGnhDa~ 321 (481)
T COG1311 262 RVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQVPEHIKVFIMPGNHDAV 321 (481)
T ss_pred ceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhCCCCceEEEecCCCCcc
Confidence 458999999999965211 122356777888887765 6899999999974
No 89
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.99 E-value=0.00025 Score=66.67 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYN 73 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~ 73 (282)
.+.++...++.+.++.+..++|.+||+++|...... ...-......++.+ ..=....||||+..
T Consensus 53 g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~-~~~g~~~~~~mN~m-~yDa~tiGNHEFd~ 116 (517)
T COG0737 53 GLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDY-LTKGEPTVDLLNAL-GYDAMTLGNHEFDY 116 (517)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCcccCCcccccc-ccCCChHHHHHhhc-CCcEEeeccccccc
Confidence 456777778877776456789999999986322211 11122334444444 34567889999953
No 90
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.93 E-value=0.00043 Score=66.31 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccH-H-----HHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhh
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSL-E-----AVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLP 81 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~-~-----~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~ 81 (282)
.+.++..+++.+.++..--+++.+||++.|....+... + ...-+.+.++.++ .=..++||||+. +..+.+.+
T Consensus 30 Glar~atli~~~R~e~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~~~mN~lg-yDa~tlGNHEFd-~G~~~L~~ 107 (626)
T TIGR01390 30 GLTRTATLIKQARAEVKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVYKAMNLLK-YDVGNLGNHEFN-YGLPFLKQ 107 (626)
T ss_pred CHHHHHHHHHHHHhhCCCeEEEECCCcCCCccchhhhhhccccCCCcChHHHHHhhcC-ccEEeccccccc-ccHHHHHH
Confidence 46788888888876523468999999998531111000 0 0122445555553 335789999984 33334443
Q ss_pred hh
Q 023422 82 LL 83 (282)
Q Consensus 82 ~l 83 (282)
.+
T Consensus 108 ~~ 109 (626)
T TIGR01390 108 AI 109 (626)
T ss_pred HH
Confidence 33
No 91
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.93 E-value=0.00053 Score=70.42 Aligned_cols=73 Identities=11% Similarity=0.170 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhcCCccE-EEEcCCCCCCCCCCcc----c---HHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhh
Q 023422 8 SLLVLQNAVQRWNNHQKLKF-VIHFGDIVDGFCPKDQ----S---LEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHML 79 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~-vi~~GDi~d~~~~~~~----~---~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~ 79 (282)
.+.++..+++.+.++ .++. ++.+||++.|...-+. . ......+.+.++.++ .-.+++||||+. +..+.+
T Consensus 69 Glar~at~i~~~r~~-~~n~llld~GD~~qGs~l~~~~~~~~~~~~~~~~~~i~~mN~lg-yDa~~lGNHEFd-~G~~~L 145 (1163)
T PRK09419 69 GLAQTATLIKKARKE-NPNTLLVDNGDLIQGNPLGEYAVKDNILFKNKTHPMIKAMNALG-YDAGTLGNHEFN-YGLDFL 145 (1163)
T ss_pred CHHHHHHHHHHHHHh-CCCeEEEeCCCccCCChhhhHHhhhccccCCCcCHHHHHHhhcC-ccEEeecccccc-cCHHHH
Confidence 567888999988876 5555 5559999985311000 0 001123445555553 335669999984 333344
Q ss_pred hhhh
Q 023422 80 LPLL 83 (282)
Q Consensus 80 ~~~l 83 (282)
.+.+
T Consensus 146 ~~~~ 149 (1163)
T PRK09419 146 DGTI 149 (1163)
T ss_pred HHHH
Confidence 4433
No 92
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.92 E-value=0.0011 Score=64.75 Aligned_cols=74 Identities=12% Similarity=0.107 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccH-------HHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhh
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSL-------EAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLL 80 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~-------~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~ 80 (282)
.+.++..+++.+.++..--+++.+||++.|-..-+... ....-+.+.++.++ .-...+||||+. +..+.+.
T Consensus 143 GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~i~amN~LG-yDA~tLGNHEFD-yG~d~L~ 220 (814)
T PRK11907 143 GLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPMYAALEALG-FDAGTLGNHEFN-YGLDYLE 220 (814)
T ss_pred cHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchHHHHHHhccC-CCEEEechhhcc-cCHHHHH
Confidence 46677888888876523357999999998631111000 00112455555553 446789999984 3333444
Q ss_pred hhh
Q 023422 81 PLL 83 (282)
Q Consensus 81 ~~l 83 (282)
+++
T Consensus 221 ~~l 223 (814)
T PRK11907 221 KVI 223 (814)
T ss_pred HHH
Confidence 433
No 93
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.89 E-value=0.0002 Score=60.55 Aligned_cols=50 Identities=24% Similarity=0.203 Sum_probs=33.7
Q ss_pred CccEEEEcCCCCCCCCCCc---------------ccHHHHHHHHHHHHhcC--CCEEEecCCCCCCC
Q 023422 24 KLKFVIHFGDIVDGFCPKD---------------QSLEAVKKVVNEFEKFN--GPAYHMIGNHCLYN 73 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~---------------~~~~~~~~~~~~l~~~~--~pv~~v~GNHD~~~ 73 (282)
++..||++||.+++..... ...+.++.+...|.++. +||..+|||||-.+
T Consensus 42 ~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~ 108 (257)
T cd07387 42 SIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLASSVPVDLMPGEFDPAN 108 (257)
T ss_pred ceEEEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhhcCCeEEECCCCCCccc
Confidence 4568999999998542110 12344555555665543 79999999999743
No 94
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.88 E-value=0.00011 Score=57.22 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhh-cCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 9 LLVLQNAVQRWNN-HQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 9 ~~~l~~~~~~~~~-~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
++.+-+.++.+++ ..+.|++|++||.+.- ......+..+.+.-.+.++|+|++-|||+
T Consensus 10 l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~----~~~~~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 10 LKALFEKVNTINKKKGPFDALLCVGDFFGD----DEDDEELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred HHHHHHHHHHHhcccCCeeEEEEecCccCC----ccchhhHHHHhcCCccCCCCEEEECCCCC
Confidence 3444444444443 2378999999999952 12224455555555566789999999997
No 95
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.87 E-value=0.00054 Score=64.76 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
...++..+++.+.+..+.-+++.+||.+.|. +.. ....-+...+.++.+ ..-.+++||||+.
T Consensus 33 G~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs-~~~-~~~~g~~~i~~~N~~-g~Da~~lGNHEFd 94 (550)
T TIGR01530 33 GFAALNAEINKLRAESKNALVLHAGDAIIGT-LYF-TLFGGRADAALMNAA-GFDFFTLGNHEFD 94 (550)
T ss_pred CHHHHHHHHHHHHhhCCCeEEEECCCCCCCc-cch-hhcCCHHHHHHHhcc-CCCEEEecccccc
Confidence 4667888888887653446889999999753 110 001111234455554 3456789999984
No 96
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.84 E-value=0.00079 Score=64.75 Aligned_cols=74 Identities=18% Similarity=0.194 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccH-H-----HHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhh
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSL-E-----AVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLP 81 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~-~-----~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~ 81 (282)
.+.++..+++.+.++..--+++.+||++.|....+... + ...-+.+.++.+ ..-...+||||+. +..+.+.+
T Consensus 53 Glar~atli~~~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p~i~amN~l-gyDa~tlGNHEFd-~G~~~L~~ 130 (649)
T PRK09420 53 GLVRTASLIKAARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHPVYKAMNTL-DYDVGNLGNHEFN-YGLDYLKK 130 (649)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECCCcCCCchhhhhhhhccccCCCcchHHHHHHhc-CCcEEeccchhhh-cCHHHHHH
Confidence 45778888888876523467999999997531110000 0 001234555555 3446789999983 33334444
Q ss_pred hh
Q 023422 82 LL 83 (282)
Q Consensus 82 ~l 83 (282)
.+
T Consensus 131 ~~ 132 (649)
T PRK09420 131 AL 132 (649)
T ss_pred HH
Confidence 33
No 97
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.83 E-value=3.9e-05 Score=63.20 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhh-------cCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHH---hcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNN-------HQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFE---KFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~-------~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~---~~~~pv~~v~GNHD~ 71 (282)
++.|.++++.+.- ..+.|.++++||++|.. ....+.++.+.+... +.+.+++++.||||.
T Consensus 10 ~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG---~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~ 79 (208)
T cd07425 10 LDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRG---PDVIEILWLLYKLEQEAAKAGGKVHFLLGNHEL 79 (208)
T ss_pred HHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCC---cCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcH
Confidence 5677788876642 12689999999999832 123344444433322 235689999999997
No 98
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.69 E-value=0.0012 Score=57.84 Aligned_cols=64 Identities=11% Similarity=-0.022 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhc----CCccEEEEcCCCCCCCCCCccc------HHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 8 SLLVLQNAVQRWNNH----QKLKFVIHFGDIVDGFCPKDQS------LEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~----~~~d~vi~~GDi~d~~~~~~~~------~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
...++..+++.+.+. .+..+++.+||.+.|...-... ...-....+.++.++.. .+++||||+.
T Consensus 18 g~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g~D-a~tlGNHEFD 91 (313)
T cd08162 18 DAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALGVQ-AIALGNHEFD 91 (313)
T ss_pred CHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccCCc-EEeccccccc
Confidence 355666677766543 2446899999999752110000 00112345556555433 5679999984
No 99
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.68 E-value=6.6e-05 Score=63.72 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
.++.|+++++.+...++.|.++++||++|.. ..+. .+++.+.+++..++.|.||||.
T Consensus 10 ~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRG---p~s~----evl~~l~~l~~~v~~VlGNHD~ 66 (257)
T cd07422 10 CYDELQRLLEKINFDPAKDRLWLVGDLVNRG---PDSL----ETLRFVKSLGDSAKTVLGNHDL 66 (257)
T ss_pred CHHHHHHHHHhcCCCCCCCEEEEecCcCCCC---cCHH----HHHHHHHhcCCCeEEEcCCchH
Confidence 3567888888876544689999999999832 1222 3555555565689999999996
No 100
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.65 E-value=7.8e-05 Score=63.96 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+..|.++++.+.-.+++|.++++||+++.. ..+. .+++.+.+++.++++|.||||.
T Consensus 13 ~~~l~~ll~~~~~~~~~D~li~lGDlVdrG---p~s~----~vl~~l~~l~~~~~~VlGNHD~ 68 (275)
T PRK00166 13 YDELQRLLEKIDFDPAKDTLWLVGDLVNRG---PDSL----EVLRFVKSLGDSAVTVLGNHDL 68 (275)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEeCCccCCC---cCHH----HHHHHHHhcCCCeEEEecChhH
Confidence 567778888775333689999999999832 1223 3444555556689999999996
No 101
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.49 E-value=0.00022 Score=59.28 Aligned_cols=58 Identities=21% Similarity=0.119 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+..|.++++.+... +.|.+|++||++|.. ..+.+.+..+.+.... +.+++++.||||.
T Consensus 10 ~~~l~~~l~~~~~~-~~d~li~lGD~vdrg---~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~ 67 (225)
T cd00144 10 LDDLLRLLEKIGFP-PNDKLIFLGDYVDRG---PDSVEVIDLLLALKIL-PDNVILLRGNHED 67 (225)
T ss_pred HHHHHHHHHHhCCC-CCCEEEEECCEeCCC---CCcHHHHHHHHHhcCC-CCcEEEEccCchh
Confidence 45677778777765 789999999999842 1233444433322222 4589999999997
No 102
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=97.48 E-value=0.00061 Score=59.06 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhc--CCccEEEEcCCCCCCCCCC----cccHHHHHHHHHHHHh------cCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNH--QKLKFVIHFGDIVDGFCPK----DQSLEAVKKVVNEFEK------FNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~--~~~d~vi~~GDi~d~~~~~----~~~~~~~~~~~~~l~~------~~~pv~~v~GNHD~ 71 (282)
|+.+-+.+..+.+. .++|+++++||.-.-.+.. -.-+.-++.+...++- .+++.++|-||||-
T Consensus 13 Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIFIGGNHEA 87 (456)
T KOG2863|consen 13 LDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIFIGGNHEA 87 (456)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEEecCchHH
Confidence 34444444555544 3899999999986411111 1223444555444442 34577999999996
No 103
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.45 E-value=0.00031 Score=58.55 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhc-------CCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNH-------QKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~-------~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
++.|.++++.+... ...|.+|++||++|.. ..+.+.++.+.+.... ..++++.||||.
T Consensus 11 ~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRG---p~S~~vl~~l~~l~~~--~~~~~l~GNHE~ 75 (222)
T cd07413 11 AEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRG---PEIRELLEIVKSMVDA--GHALAVMGNHEF 75 (222)
T ss_pred HHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCC---CCHHHHHHHHHHhhcC--CCEEEEEccCcH
Confidence 56778888777532 1358999999999832 2355555555543322 379999999996
No 104
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.30 E-value=0.00054 Score=57.95 Aligned_cols=58 Identities=24% Similarity=0.337 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhc--------CCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNH--------QKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~--------~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
++.|.++++.+.-. +..|.+|++||++|.. ..+.+.++.+++... ...++++.||||.
T Consensus 13 ~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRG---p~S~~vl~~~~~~~~--~~~~~~l~GNHE~ 78 (245)
T PRK13625 13 YQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRG---PHSLRMIEIVWELVE--KKAAYYVPGNHCN 78 (245)
T ss_pred HHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCC---cChHHHHHHHHHHhh--CCCEEEEeCccHH
Confidence 45677777765421 1347999999999832 345666666655532 2489999999995
No 105
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.24 E-value=0.00042 Score=59.15 Aligned_cols=57 Identities=25% Similarity=0.228 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
..+.|.++++.+.-.+..|.++++||+++.. ..+.+ +++.+.+++..+.+|.||||.
T Consensus 12 c~daL~~LL~~i~f~~~~D~l~~lGDlVdRG---P~sle----vL~~l~~l~~~~~~VlGNHD~ 68 (279)
T TIGR00668 12 CYDELQALLERVEFDPGQDTLWLTGDLVARG---PGSLE----VLRYVKSLGDAVRLVLGNHDL 68 (279)
T ss_pred CHHHHHHHHHHhCcCCCCCEEEEeCCccCCC---CCHHH----HHHHHHhcCCCeEEEEChhHH
Confidence 4678888898887444679999999999832 22333 334444555567899999995
No 106
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=97.17 E-value=0.0016 Score=54.00 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=39.0
Q ss_pred HHHHHHHHH-HhhcCCccEEEEcCCCCCCCCCC-cccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 10 LVLQNAVQR-WNNHQKLKFVIHFGDIVDGFCPK-DQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 10 ~~l~~~~~~-~~~~~~~d~vi~~GDi~d~~~~~-~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
+++.+.++. +... +|+.+|++||+....... ...+.....+.+.+... .++++.||||-+
T Consensus 49 ~~~~~~l~~ii~~~-~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~--evi~i~GNHD~~ 110 (235)
T COG1407 49 DRILKRLDRIIERY-GPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER--EVIIIRGNHDNG 110 (235)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEcCccccccCccccccHHHHHHHHHHhccC--cEEEEeccCCCc
Confidence 344445553 3455 999999999999744332 23444445555555444 699999999963
No 107
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=97.07 E-value=0.007 Score=50.85 Aligned_cols=44 Identities=25% Similarity=0.203 Sum_probs=34.8
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC-CCEEEecCCCCCC
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN-GPAYHMIGNHCLY 72 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~-~pv~~v~GNHD~~ 72 (282)
.-|+++.+||.+. ....+.+..+.+.+..++ ..-+.|.||||++
T Consensus 82 ~gDvlihagdfT~-----~g~~~ev~~fn~~~gslph~yKIVIaGNHELt 126 (305)
T KOG3947|consen 82 DGDVLIHAGDFTN-----LGLPEEVIKFNEWLGSLPHEYKIVIAGNHELT 126 (305)
T ss_pred CCceEEeccCCcc-----ccCHHHHHhhhHHhccCcceeeEEEeecccee
Confidence 4588999999997 456777777777777775 4678999999984
No 108
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=96.97 E-value=0.0019 Score=54.40 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEeeCCCCCCC--------------CCccccc---CHHHHHHHHHccCcEEEEEeCcccC
Q 023422 165 IKWLDAVLQDATKLNQKVVVCCHVPLDPGSA--------------SPEALLW---NCNEVMDVIHRYNCVKVCLAGHDHQ 227 (282)
Q Consensus 165 ~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~--------------~~~~~~~---~~~~~~~~l~~~~~v~~~~~GH~H~ 227 (282)
+-|++..|...-..++++++|.|+.-...+. .+....| ....+...++.|+ |...++||-|.
T Consensus 255 lpwlk~dl~~~aadgrpv~LfqhyGwdtfsteawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYN-vvg~fhGhkhd 333 (392)
T COG5555 255 LPWLKVDLIYSAADGRPVYLFQHYGWDTFSTEAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYN-VVGTFHGHKHD 333 (392)
T ss_pred CcceeccceeeccCCCceeehhhhCccceeccccCchhcccccCCCCCCCCCCCCCcchHHHhhcCce-eEEeccccccc
Confidence 3577777765544678999999997553322 0011112 2356788888895 99999999998
Q ss_pred CCccccCCCCeEEeccccccCCCCCCceEEEEEeC
Q 023422 228 GGHSIDTHGIHHRVLEAALECPPGTDAFGHIDAYD 262 (282)
Q Consensus 228 ~~~~~~~~~i~~~~~~~~~~~~~~~~~f~~v~~~~ 262 (282)
..+.....+++..-... .-.++|.+..+.+
T Consensus 334 ~~mayrr~~ld~fkpka-----a~~Ggfav~rvt~ 363 (392)
T COG5555 334 FNMAYRRYDLDAFKPKA-----AVRGGFAVGRVTN 363 (392)
T ss_pred cceeeeecCccccCccc-----hhhcceeEEEecC
Confidence 75433324442211111 1234666666544
No 109
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=96.90 E-value=0.028 Score=47.30 Aligned_cols=67 Identities=16% Similarity=0.038 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCC
Q 023422 166 KWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGI 237 (282)
Q Consensus 166 ~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i 237 (282)
+-+.+.+.+++++.+.+|+++|........ ......++...+...+ +++++.||.|..+-....++.
T Consensus 160 ~~i~~~i~~lr~~~D~vIv~~H~G~e~~~~----p~~~~~~~A~~l~~~G-~DvIiG~H~H~~~~~e~~~~~ 226 (239)
T smart00854 160 EKILADIARARKKADVVIVSLHWGVEYQYE----PTDEQRELAHALIDAG-ADVVIGHHPHVLQPIEIYKGK 226 (239)
T ss_pred HHHHHHHHHHhccCCEEEEEecCccccCCC----CCHHHHHHHHHHHHcC-CCEEEcCCCCcCCceEEECCE
Confidence 344445555544567899999998643321 1111134555555554 999999999987654333444
No 110
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=96.82 E-value=0.043 Score=46.11 Aligned_cols=68 Identities=15% Similarity=0.077 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCC
Q 023422 165 IKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGI 237 (282)
Q Consensus 165 ~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i 237 (282)
.+.+.+.+++++++.+.+|+++|........ ......++...+...+ +++++.||.|..+-....++.
T Consensus 161 ~~~~~~~i~~lr~~~D~vIv~~H~G~e~~~~----p~~~~~~la~~l~~~G-~D~IiG~H~Hv~q~~E~~~~~ 228 (239)
T cd07381 161 LERIAADIAEAKKKADIVIVSLHWGVEYSYY----PTPEQRELARALIDAG-ADLVIGHHPHVLQGIEIYKGK 228 (239)
T ss_pred HHHHHHHHHHHhhcCCEEEEEecCcccCCCC----CCHHHHHHHHHHHHCC-CCEEEcCCCCcCCCeEEECCE
Confidence 3445555655544567899999987543321 1111234444555554 899999999988654433444
No 111
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=96.67 E-value=0.015 Score=52.70 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCC--------------CCcccccCHHHHHHHHHccCcE--EEEE
Q 023422 158 GAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSA--------------SPEALLWNCNEVMDVIHRYNCV--KVCL 221 (282)
Q Consensus 158 ~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~--------------~~~~~~~~~~~~~~~l~~~~~v--~~~~ 221 (282)
..+++.|.+||++.|... +..+.||.+-.|+..-.. .+.......+++.+.++..+ + .+||
T Consensus 335 ~mlG~~QeqWLk~~L~~S--katWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~-~~N~V~L 411 (522)
T COG3540 335 TMLGEQQEQWLKRGLGAS--KATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRK-IRNTVVL 411 (522)
T ss_pred cchhhHHHHHHHhhhhhc--chhhhhhhhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhcC-CCCcEEE
Confidence 568899999999999886 445666666665532110 11222334578888888874 4 4999
Q ss_pred eCcccCCCc
Q 023422 222 AGHDHQGGH 230 (282)
Q Consensus 222 ~GH~H~~~~ 230 (282)
.|..|+...
T Consensus 412 tgDvH~~wA 420 (522)
T COG3540 412 TGDVHYSWA 420 (522)
T ss_pred echhHHHHH
Confidence 999997654
No 112
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.37 E-value=0.011 Score=50.75 Aligned_cols=60 Identities=17% Similarity=0.029 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
+..|.++++.+... ..+.++++||++|.. ..+.+.+..++......+..++.+.||||..
T Consensus 40 ~~~l~~ll~~~~~~-~~~~~vfLGD~VDrG---~~s~e~l~~l~~lk~~~p~~v~llrGNHE~~ 99 (271)
T smart00156 40 FDDLLRLFDLNGPP-PDTNYVFLGDYVDRG---PFSIEVILLLFALKILYPNRVVLLRGNHESR 99 (271)
T ss_pred HHHHHHHHHHcCCC-CCceEEEeCCccCCC---CChHHHHHHHHHHHhcCCCCEEEEeccccHH
Confidence 45566666655543 678899999999832 2344555555443333456799999999973
No 113
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=96.34 E-value=0.25 Score=41.46 Aligned_cols=173 Identities=14% Similarity=0.135 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhh-----
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLL----- 83 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l----- 83 (282)
...+.+.+..+.++-++|+||..|....|..+. +.+ ..+.|.+.++-+ ...|||=+.. .++.+++
T Consensus 12 r~~v~~~Lp~L~~~~~~DfVIaNgENaa~G~Gi--t~~----~~~~L~~~GvDv-iT~GNH~wdk---kei~~~i~~~~~ 81 (253)
T PF13277_consen 12 RRAVKEHLPELKEEYGIDFVIANGENAAGGFGI--TPK----IAEELFKAGVDV-ITMGNHIWDK---KEIFDFIDKEPR 81 (253)
T ss_dssp HHHHHHHHHHHGG--G-SEEEEE-TTTTTTSS----HH----HHHHHHHHT-SE-EE--TTTTSS---TTHHHHHHH-SS
T ss_pred HHHHHHHHHHHHhhcCCCEEEECCcccCCCCCC--CHH----HHHHHHhcCCCE-EecCcccccC---cHHHHHHhcCCC
Confidence 456777777777655899999999999754333 223 333444555555 4789998742 2332222
Q ss_pred --c---CC-CCCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccC
Q 023422 84 --K---IS-SVDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFN 157 (282)
Q Consensus 84 --~---~~-~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (282)
+ .+ ..++.+|..+. .++.++.++|...- + .++.
T Consensus 82 ilRPaN~p~~~pG~G~~i~~-~~g~kv~ViNl~Gr-~-fm~~-------------------------------------- 120 (253)
T PF13277_consen 82 ILRPANYPPGTPGRGYRIFE-KNGKKVAVINLMGR-V-FMPP-------------------------------------- 120 (253)
T ss_dssp EE--TTS-TT-SSBSEEEEE-ETTEEEEEEEEE---T-TS----------------------------------------
T ss_pred cEECCCCCCCCCcCcEEEEE-ECCEEEEEEECccc-c-cCCC--------------------------------------
Confidence 2 11 13666777775 47777777765221 1 1111
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCc--cccCC
Q 023422 158 GAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGH--SIDTH 235 (282)
Q Consensus 158 ~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~--~~~~~ 235 (282)
+ +--+..+.+.+++.......+||=.|.- ..++...-.+.--++|.+|+==|||.... +...+
T Consensus 121 --~-~~PF~~~d~~l~~l~~~~~~iiVDFHAE------------aTSEK~A~g~~lDGrvsaV~GTHTHVqTaDerILp~ 185 (253)
T PF13277_consen 121 --I-DCPFRAADRLLEELKEETDIIIVDFHAE------------ATSEKQAMGWYLDGRVSAVVGTHTHVQTADERILPG 185 (253)
T ss_dssp ----S-HHHHHHHHHHH-----SEEEEEEE-S-------------HHHHHHHHHHHBTTBSEEEEESSSS-BS--EE-TT
T ss_pred --C-CChHHHHHHHHHhccccCCEEEEEeecC------------cHHHHHHHHHHhCCcEEEEEeCCCCccCchhhccCC
Confidence 1 1233445555555433445566666742 11122111111124589999999997653 34457
Q ss_pred CCeEEecccccc
Q 023422 236 GIHHRVLEAALE 247 (282)
Q Consensus 236 ~i~~~~~~~~~~ 247 (282)
|+-|++=.++++
T Consensus 186 GTaYiTDvGMtG 197 (253)
T PF13277_consen 186 GTAYITDVGMTG 197 (253)
T ss_dssp S-EEES---EBE
T ss_pred CCEEEecCcccc
Confidence 887777555444
No 114
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=96.31 E-value=0.011 Score=51.83 Aligned_cols=61 Identities=20% Similarity=0.033 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
+..|.++++....-...+.++++||++|.. ..+.+.+..++......+..++.+.||||..
T Consensus 63 ~~dL~~il~~~g~~~~~~~~lFLGDyVDRG---~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~ 123 (321)
T cd07420 63 LDDLFLIFYKNGLPSPENPYVFNGDFVDRG---KRSIEILIILFAFFLVYPNEVHLNRGNHEDH 123 (321)
T ss_pred HHHHHHHHHHcCCCCccceEEEeccccCCC---CCcHHHHHHHHHHhhcCCCcEEEecCchhhh
Confidence 344555554332211236799999999843 3566666666555444556799999999974
No 115
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=96.22 E-value=0.015 Score=50.83 Aligned_cols=59 Identities=19% Similarity=0.087 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+..|.++++..... ..+.++++||++|.. ..+.+.+..++...-..+..++.+.||||.
T Consensus 55 ~~dL~~l~~~~g~~-~~~~ylFLGDyVDRG---~~s~Evi~lL~~lki~~p~~v~lLRGNHE~ 113 (305)
T cd07416 55 FYDLLKLFEVGGSP-ANTRYLFLGDYVDRG---YFSIECVLYLWALKILYPKTLFLLRGNHEC 113 (305)
T ss_pred HHHHHHHHHhcCCC-CCceEEEECCccCCC---CChHHHHHHHHHHHhhcCCCEEEEeCCCcH
Confidence 34455555543333 568899999999842 234455555554333345579999999996
No 116
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.016 Score=44.18 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=46.7
Q ss_pred cCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEeccccccC------CCCCCceEEEEEeCCeEEEE
Q 023422 202 WNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALEC------PPGTDAFGHIDAYDDRLSLV 268 (282)
Q Consensus 202 ~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~------~~~~~~f~~v~~~~~~~~~~ 268 (282)
|+..+-..+|.+.=.|++.++||||....+.. +|.-+++-+|..++ .+..++|.+.++.+..+...
T Consensus 93 ~gd~~sL~~LaRqldvDILl~G~Th~f~Aye~-eg~ffvnPGSaTGAfn~~~t~~~~PSFvLmDiqg~~~v~Y 164 (183)
T KOG3325|consen 93 WGDPESLALLARQLDVDILLTGHTHKFEAYEH-EGKFFVNPGSATGAFNVSDTDIIVPSFVLMDIQGSTVVTY 164 (183)
T ss_pred CCCHHHHHHHHHhcCCcEEEeCCceeEEEEEe-CCcEEeCCCcccCCCcccccCCCCCceEEEEecCCEEEEE
Confidence 33344445555543499999999999988888 78767776665554 23578999999988875533
No 117
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.071 Score=49.65 Aligned_cols=60 Identities=13% Similarity=0.338 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEE-EEeCcccCCCccc
Q 023422 164 QIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKV-CLAGHDHQGGHSI 232 (282)
Q Consensus 164 ~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~-~~~GH~H~~~~~~ 232 (282)
|.+|-...+... ..+.+|++.|.|.....- |.. ...++...++++.+ +|=||.|...+..
T Consensus 213 ~~~~~~~m~~~~--~idlii~lgH~~~~~~~e------~~~-~~~~ir~~~p~t~IqviGGHshird~a~ 273 (602)
T KOG4419|consen 213 QSEWEQDMVNTT--DIDLIIALGHSPVRDDDE------WKS-LHAEIRKVHPNTPIQVIGGHSHIRDFAV 273 (602)
T ss_pred ccchHHHHhhcc--CccEEEEecccccccchh------hhh-HHHHHhhhCCCCceEEECchhhhhhhhh
Confidence 445555555543 446788888998654331 111 22334444555555 9999999987755
No 118
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=95.76 E-value=0.023 Score=49.12 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
+..|.++++..... ..+.++++||++|.. ..+.+.+..++......+..++.+.||||..
T Consensus 54 ~~dL~~ll~~~~~~-~~~~~lfLGDyVDRG---~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 113 (285)
T cd07415 54 FYDLLELFRVGGDP-PDTNYLFLGDYVDRG---YYSVETFLLLLALKVRYPDRITLLRGNHESR 113 (285)
T ss_pred HHHHHHHHHHcCCC-CCCeEEEEeEECCCC---cCHHHHHHHHHHHhhcCCCcEEEEecccchH
Confidence 44555555544332 457899999999832 2344444444432223445799999999963
No 119
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=95.71 E-value=0.026 Score=48.98 Aligned_cols=60 Identities=22% Similarity=0.133 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
+..|.++++..... ..+-++++||++|.. ..+.+.+..++...-..+..++.+.||||..
T Consensus 62 ~~~L~~l~~~~~~~-~~~~~lfLGDyVDRG---~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~ 121 (293)
T cd07414 62 YYDLLRLFEYGGFP-PESNYLFLGDYVDRG---KQSLETICLLLAYKIKYPENFFLLRGNHECA 121 (293)
T ss_pred HHHHHHHHHhcCCC-CcceEEEEeeEecCC---CCcHHHHHHHHHhhhhCCCcEEEEecccchh
Confidence 44555566554433 557889999999842 2344555544433223445699999999974
No 120
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=95.52 E-value=0.032 Score=48.93 Aligned_cols=60 Identities=22% Similarity=0.154 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
+..|.++++..... ..+..+++||++|.. ..+.+.+..++...-..+..++.+.||||..
T Consensus 71 ~~dL~~l~~~~g~~-~~~~ylfLGDyVDRG---~~s~evl~ll~~lki~~p~~v~llRGNHE~~ 130 (320)
T PTZ00480 71 YFDLLRLFEYGGYP-PESNYLFLGDYVDRG---KQSLETICLLLAYKIKYPENFFLLRGNHECA 130 (320)
T ss_pred HHHHHHHHHhcCCC-CcceEEEeceecCCC---CCcHHHHHHHHHhcccCCCceEEEecccchh
Confidence 44555555544333 456788999999832 2344444444432223345799999999974
No 121
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=95.46 E-value=0.042 Score=49.16 Aligned_cols=60 Identities=18% Similarity=0.100 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 10 LVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 10 ~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
..|.++++.......-+.+|++||++|.. ..+.+.+..++...-..+..++.+.||||..
T Consensus 79 ~dL~~ll~~~g~~~~~~~ylFLGDyVDRG---p~SlEvl~lL~~lki~~p~~v~lLRGNHE~~ 138 (377)
T cd07418 79 HDVLFLLEDAGFPDQNRFYVFNGDYVDRG---AWGLETFLLLLSWKVLLPDRVYLLRGNHESK 138 (377)
T ss_pred HHHHHHHHHhCCCCCCceEEEeccccCCC---CChHHHHHHHHHHhhccCCeEEEEeeecccc
Confidence 34444554433221124699999999832 2345555544433223445799999999963
No 122
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=95.45 E-value=0.035 Score=48.39 Aligned_cols=60 Identities=23% Similarity=0.183 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
+..|.++++..... ..+.++++||++|.. ..+.+.+..++......+.-++.+.||||..
T Consensus 55 ~~~L~~l~~~~~~~-~~~~~lfLGDyVDRG---~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 114 (303)
T PTZ00239 55 FYDLQALFKEGGDI-PNANYIFIGDFVDRG---YNSVETMEYLLCLKVKYPGNITLLRGNHESR 114 (303)
T ss_pred HHHHHHHHHhcCCC-CCceEEEeeeEcCCC---CCHHHHHHHHHHhhhcCCCcEEEEecccchH
Confidence 44555555544333 457799999999832 2344444444432223345699999999963
No 123
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=95.45 E-value=0.031 Score=49.04 Aligned_cols=59 Identities=19% Similarity=0.033 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 10 LVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 10 ~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
..|.++++...-.+.-+.++++||++|.. ..+.+.+..++......+.-++.+.||||.
T Consensus 73 ~dL~~ll~~~g~~~~~~~ylFLGDyVDRG---~~S~Evl~ll~~lki~~p~~v~lLRGNHE~ 131 (316)
T cd07417 73 YDLLNIFELNGLPSETNPYLFNGDFVDRG---SFSVEVILTLFAFKLLYPNHFHLNRGNHET 131 (316)
T ss_pred HHHHHHHHhcCCCCccCeEEEEeeEecCC---CChHHHHHHHHHhhhccCCceEEEeeccch
Confidence 44445554333221235799999999843 345555555553333344578999999996
No 124
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=95.29 E-value=0.037 Score=48.02 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
+..|.++++.+... ..+-++++||++|.. ..+.+.+..++...-..+..++.+.||||..
T Consensus 64 ~~~L~~l~~~~~~~-~~~~~lfLGDyVDRG---~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 123 (294)
T PTZ00244 64 YYDLLRIFEKCGFP-PYSNYLFLGDYVDRG---KHSVETITLQFCYKIVYPENFFLLRGNHECA 123 (294)
T ss_pred HHHHHHHHHHcCCC-CcccEEEeeeEecCC---CCHHHHHHHHHHHhhccCCeEEEEecccchH
Confidence 44555555554433 445688999999842 2233433333321112345799999999963
No 125
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=95.18 E-value=0.58 Score=38.78 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=30.4
Q ss_pred CccEEEEcCCCCCCCCC-----------------CcccHHHHHHHHHHH------Hh--cCCCEEEecCCCCCC
Q 023422 24 KLKFVIHFGDIVDGFCP-----------------KDQSLEAVKKVVNEF------EK--FNGPAYHMIGNHCLY 72 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~-----------------~~~~~~~~~~~~~~l------~~--~~~pv~~v~GNHD~~ 72 (282)
++|++|++||.+-.... .....+.+....... +. ..+|++.++-+||+.
T Consensus 29 ~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~p~~~~~~~~~p~~~iwDDHDi~ 102 (228)
T cd07389 29 DPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSDPDLQRLLAQVPTIGIWDDHDIG 102 (228)
T ss_pred CCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCCHHHHHHhhcCCEEEeccccccc
Confidence 89999999999953311 122333333322222 12 136999999999985
No 126
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=95.17 E-value=0.06 Score=47.20 Aligned_cols=42 Identities=26% Similarity=0.231 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 27 FVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 27 ~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
.++++||++|.. ..+.+.+..++......+..++.+.||||.
T Consensus 85 ~~vfLGDyVDRG---p~s~evl~ll~~lk~~~p~~v~lLRGNHE~ 126 (311)
T cd07419 85 DYLFLGDYVDRG---SNSLETICLLLALKVKYPNQIHLIRGNHED 126 (311)
T ss_pred eEEEECCccCCC---CChHHHHHHHHHhhhcCCCcEEEeccccch
Confidence 488999999832 235555555554333345689999999996
No 127
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=94.93 E-value=0.4 Score=40.57 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCC
Q 023422 162 KEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGI 237 (282)
Q Consensus 162 ~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i 237 (282)
...++.+.+.++++.++.+.+|++.|....-... ......++...+...+ +++|+.+|.|.-+-....++.
T Consensus 167 ~~~~~~i~~~i~~~r~~~D~vIv~~HwG~e~~~~----p~~~q~~~a~~lidaG-aDiIiG~HpHv~q~~E~y~~~ 237 (250)
T PF09587_consen 167 RPGIERIKEDIREARKKADVVIVSLHWGIEYENY----PTPEQRELARALIDAG-ADIIIGHHPHVIQPVEIYKGK 237 (250)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEEeccCCCCCCC----CCHHHHHHHHHHHHcC-CCEEEeCCCCcccceEEECCE
Confidence 4456788888888876678899999997443221 1122235555666665 899999999988765543444
No 128
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=94.62 E-value=0.021 Score=46.90 Aligned_cols=65 Identities=17% Similarity=0.156 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHh-hcCCccEEEEcCCCCCCCCCC----------cccHHHHHHHHHHHHhc--CCCEEEecCCCCCCC
Q 023422 8 SLLVLQNAVQRWN-NHQKLKFVIHFGDIVDGFCPK----------DQSLEAVKKVVNEFEKF--NGPAYHMIGNHCLYN 73 (282)
Q Consensus 8 ~~~~l~~~~~~~~-~~~~~d~vi~~GDi~d~~~~~----------~~~~~~~~~~~~~l~~~--~~pv~~v~GNHD~~~ 73 (282)
.++.|..+++.+. +. +|+.+|++|+.+++.... .........+...+.++ .++|+.|||+||...
T Consensus 15 ~~~~L~~~l~~~~~~~-~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vvlvPg~~D~~~ 92 (209)
T PF04042_consen 15 SLEPLRDLLSGVEDAS-KPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQVVLVPGPNDPTS 92 (209)
T ss_dssp HHHHHHHHHHCCCHCT-TECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSEEEEE--TTCTT-
T ss_pred HHHHHHHHHHhccccC-CCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccEEEEeCCCccccc
Confidence 4667777777666 55 899999999999853111 11122333344444443 379999999999753
No 129
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=93.12 E-value=4.6 Score=33.85 Aligned_cols=171 Identities=16% Similarity=0.201 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhh-------
Q 023422 10 LVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPL------- 82 (282)
Q Consensus 10 ~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~------- 82 (282)
..++.-+..++..-++|+||..|-.+.|..+. .++.+ +.+.+.++.+ ...|||=+. ..+..++
T Consensus 16 ~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Gi--t~k~y----~~l~~~G~dv-iT~GNH~wd---~~ei~~~i~~~~~i 85 (266)
T COG1692 16 KAVKEHLPQLKSKYKIDFVIVNGENAAGGFGI--TEKIY----KELLEAGADV-ITLGNHTWD---QKEILDFIDNADRI 85 (266)
T ss_pred HHHHHHhHHHHHhhcCcEEEEcCccccCCcCC--CHHHH----HHHHHhCCCE-Eeccccccc---chHHHHHhhcccce
Confidence 34555555555443899999999999754333 33333 3444455554 578999873 2222211
Q ss_pred hc---CCC-CCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCC
Q 023422 83 LK---ISS-VDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNG 158 (282)
Q Consensus 83 l~---~~~-~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (282)
++ .+. .++.+|..+. ..+.++.++|-.. .++ ++.
T Consensus 86 lRP~N~p~~~~G~G~~~f~-~ng~ki~V~Nl~G-rv~-m~~--------------------------------------- 123 (266)
T COG1692 86 LRPANYPDGTPGKGSRIFK-INGKKLAVINLMG-RVF-MPP--------------------------------------- 123 (266)
T ss_pred eccCCCCCCCCcceEEEEE-eCCcEEEEEEeec-ccc-Ccc---------------------------------------
Confidence 22 111 2455566565 5565655555421 111 110
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHcc--CcEEEEEeCcccCCCc--cccC
Q 023422 159 AVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRY--NCVKVCLAGHDHQGGH--SIDT 234 (282)
Q Consensus 159 ~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~--~~v~~~~~GH~H~~~~--~~~~ 234 (282)
.+ +.-..-+.+.+.+.+.....+||=.|.--..+- +++.-+ +++.+|+==|||.... +.+.
T Consensus 124 ~~-d~PF~~~d~l~~~~~~~~~~iiVDFHAEtTSEK--------------~a~g~yldGrvsavvGTHTHV~TaD~rIL~ 188 (266)
T COG1692 124 AL-DNPFKAADKLLDEIKLGTDLIIVDFHAETTSEK--------------NAFGWYLDGRVSAVVGTHTHVPTADERILP 188 (266)
T ss_pred cc-CCHHHHHHHHHHhCccCCceEEEEccccchhhh--------------hhhheEEcCeEEEEEeccCccccccceecC
Confidence 01 233455566666665444456666675311110 112222 3589999999998654 3445
Q ss_pred CCCeEEecccccc
Q 023422 235 HGIHHRVLEAALE 247 (282)
Q Consensus 235 ~~i~~~~~~~~~~ 247 (282)
+|+-|+.=.++++
T Consensus 189 ~GTayiTDvGMtG 201 (266)
T COG1692 189 KGTAYITDVGMTG 201 (266)
T ss_pred CCcEEEecCcccc
Confidence 7787777555544
No 130
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=88.94 E-value=0.63 Score=38.12 Aligned_cols=42 Identities=26% Similarity=0.233 Sum_probs=32.1
Q ss_pred EEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 28 VIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 28 vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
-|+.||.+|.. ..+.+.+..++-...+.+..+-.+.||||-.
T Consensus 76 YiFmGDfVDRG---yySLEtfT~l~~LkaryP~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 76 YIFMGDFVDRG---YYSLETFTLLLLLKARYPAKITLLRGNHESR 117 (306)
T ss_pred eEEeccccccc---cccHHHHHHHHHHhhcCCceeEEeeccchhh
Confidence 57788888732 3567777777777777778899999999953
No 131
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=87.87 E-value=0.69 Score=38.56 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=25.4
Q ss_pred EEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 28 VIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 28 vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
-+++||.+|.. ..+.+.+--++-.-...+..+..+.||||-.
T Consensus 73 YLFLGDyVDRG---~~SvEt~lLLl~lK~rYP~ritLiRGNHEsR 114 (303)
T KOG0372|consen 73 YLFLGDYVDRG---YYSVETFLLLLALKVRYPDRITLIRGNHESR 114 (303)
T ss_pred eEeecchhccc---cchHHHHHHHHHHhhcCcceeEEeeccchhh
Confidence 56778888721 2344444333332233557899999999964
No 132
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=84.68 E-value=1.2 Score=42.26 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=28.7
Q ss_pred hhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 20 NNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 20 ~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
.+. -+|.+-++|||+|..... +.+++.|-.. -.|=.-+||||.
T Consensus 181 qrL-~VDhLHIvGDIyDRGp~p-------d~ImD~Lm~~-hsvDIQWGNHDI 223 (640)
T PF06874_consen 181 QRL-AVDHLHIVGDIYDRGPRP-------DKIMDRLMNY-HSVDIQWGNHDI 223 (640)
T ss_pred HHH-hhhheeecccccCCCCCh-------hHHHHHHhcC-CCccccccchHH
Confidence 344 789999999999943222 3445555433 356668999993
No 133
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.34 E-value=28 Score=32.06 Aligned_cols=52 Identities=23% Similarity=0.315 Sum_probs=38.0
Q ss_pred HHHHHhhc-CCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 15 AVQRWNNH-QKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 15 ~~~~~~~~-~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
-|+.+++. ...|++|++|+.+.+ +.....+..+.+...++++|+|+.-+|.-
T Consensus 24 rI~~v~Kk~GpFd~liCvGnfF~~----~~~~~e~~~ykng~~~vPiptY~~g~~~~ 76 (528)
T KOG2476|consen 24 RIQKVNKKSGPFDLLICVGNFFGH----DTQNAEVEKYKNGTKKVPIPTYFLGDNAN 76 (528)
T ss_pred HHHHHhhcCCCceEEEEecccCCC----ccchhHHHHHhcCCccCceeEEEecCCCC
Confidence 34444443 257999999999974 34556667777777788899999988874
No 134
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=84.16 E-value=2.3 Score=35.84 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhcC-CccE-EEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 11 VLQNAVQRWNNHQ-KLKF-VIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 11 ~l~~~~~~~~~~~-~~d~-vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
.+..+++-++.-. .||. .+++||.+|.. ..+.+....+...--..+-.|..+.||||.
T Consensus 71 qf~dl~ELfkiGG~~pdtnylfmGDyvdrG---y~SvetVS~lva~Kvry~~rvtilrGNHEs 130 (319)
T KOG0371|consen 71 QFHDLIELFKIGGLAPDTNYLFMGDYVDRG---YYSVETVSLLVALKVRYPDRVTILRGNHES 130 (319)
T ss_pred hHHHHHHHHHccCCCCCcceeeeeeecccc---cchHHHHHHHHHhhccccceeEEecCchHH
Confidence 3444444443321 3444 78899999832 245555555554444455789999999995
No 135
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=79.43 E-value=1.1 Score=39.55 Aligned_cols=46 Identities=26% Similarity=0.307 Sum_probs=27.7
Q ss_pred cEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCC
Q 023422 26 KFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNL 74 (282)
Q Consensus 26 d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~ 74 (282)
.-.+++||++|.. ..+-+.+-.++..-...+..++.+.||||....
T Consensus 88 ~~ylFLGDYVDRG---~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~i 133 (331)
T KOG0374|consen 88 QNYVFLGDYVDRG---KQSLETICLLFALKIKYPENVFLLRGNHECASI 133 (331)
T ss_pred ccEEEecccccCC---ccceEEeehhhhhhhhCCceEEEeccccccccc
Confidence 4588899999843 122222222222222356789999999998643
No 136
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=79.07 E-value=9.4 Score=26.44 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecC
Q 023422 12 LQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 12 l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 67 (282)
..+.++.+++. ....|++++|.-. .....+....++.++|+.+++=
T Consensus 18 ~kqt~Kai~kg-~~~~v~iA~Da~~---------~vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 18 LKETLKALKKD-QVTSLIIAEDVEV---------YLMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred HHHHHHHHhcC-CceEEEEeCCCCH---------HHHHHHHHHHHHcCCCEEEECC
Confidence 34566777766 7899999999963 4566777788888899998863
No 137
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=76.06 E-value=14 Score=30.33 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh-cCCCEEEecCCCCC
Q 023422 10 LVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK-FNGPAYHMIGNHCL 71 (282)
Q Consensus 10 ~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~-~~~pv~~v~GNHD~ 71 (282)
+.+.++.+.+.+. ..|++++.|=.- -+.+....+.+.+++ ..+|++..|||++.
T Consensus 11 e~~~~ia~~v~~~-gtDaI~VGGS~g-------vt~~~~~~~v~~ik~~~~lPvilfp~~~~~ 65 (205)
T TIGR01769 11 DEIEKIAKNAKDA-GTDAIMVGGSLG-------IVESNLDQTVKKIKKITNLPVILFPGNVNG 65 (205)
T ss_pred HHHHHHHHHHHhc-CCCEEEEcCcCC-------CCHHHHHHHHHHHHhhcCCCEEEECCCccc
Confidence 4455566666776 789999988741 245666667777776 56899999999994
No 138
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=72.72 E-value=15 Score=30.57 Aligned_cols=52 Identities=8% Similarity=0.082 Sum_probs=39.6
Q ss_pred HHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 12 LQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 12 l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
..+.++.+.+. ..|++++.|=.- -+.+..+.+...+++...|++..|||++.
T Consensus 16 ~~~~~~~~~~~-gtdai~vGGS~~-------vt~~~~~~~v~~ik~~~lPvilfp~~~~~ 67 (223)
T TIGR01768 16 ADEIAKAAAES-GTDAILIGGSQG-------VTYEKTDTLIEALRRYGLPIILFPSNPTN 67 (223)
T ss_pred cHHHHHHHHhc-CCCEEEEcCCCc-------ccHHHHHHHHHHHhccCCCEEEeCCCccc
Confidence 34466677777 889999999662 24456777777888777899999999994
No 139
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=72.16 E-value=3.6 Score=36.36 Aligned_cols=42 Identities=24% Similarity=0.214 Sum_probs=23.4
Q ss_pred EEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 28 VIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 28 vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
-+++||.+|.. ..+-+.+-.+...--..+...+.+.||||+.
T Consensus 118 YLFLGDYVDRG---yFSiECvlYLwsLKi~yp~tl~lLRGNHECr 159 (517)
T KOG0375|consen 118 YLFLGDYVDRG---YFSIECVLYLWSLKINYPKTLFLLRGNHECR 159 (517)
T ss_pred eEeeccccccc---eeeeehHHHHHHHhcCCCCeEEEecCCcchh
Confidence 45677777622 2233333333322222346789999999974
No 140
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=71.45 E-value=8.9 Score=31.30 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=32.2
Q ss_pred cchhhhHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCC
Q 023422 2 GWYYRHSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGP 61 (282)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~p 61 (282)
++||.. ++..+++-.+.. +++.+++.||... .+-.+...+.+-+.+.++|
T Consensus 75 N~yy~~---Ri~aA~~ly~~g-KV~~LLlSGDN~~------~sYnEp~tM~kdL~~~GVp 124 (235)
T COG2949 75 NRYYTY---RIDAAIALYKAG-KVNYLLLSGDNAT------VSYNEPRTMRKDLIAAGVP 124 (235)
T ss_pred cHhHHH---HHHHHHHHHhcC-CeeEEEEecCCCc------ccccchHHHHHHHHHcCCC
Confidence 455544 566666666666 8999999999984 3333444555556566654
No 141
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=67.23 E-value=21 Score=29.85 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=36.0
Q ss_pred HHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 17 QRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 17 ~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+.+.+. ..|++++.|=.- -+.+..+.+.+.+++...|++..|||++-
T Consensus 26 ~~~~~~-gtdai~vGGS~~-------vt~~~~~~~v~~ik~~~lPvilfp~~~~~ 72 (232)
T PRK04169 26 EAICES-GTDAIIVGGSDG-------VTEENVDELVKAIKEYDLPVILFPGNIEG 72 (232)
T ss_pred HHHHhc-CCCEEEEcCCCc-------cchHHHHHHHHHHhcCCCCEEEeCCCccc
Confidence 555666 789999999762 14466777777887777899999999995
No 142
>PHA03008 hypothetical protein; Provisional
Probab=66.97 E-value=11 Score=30.46 Aligned_cols=43 Identities=9% Similarity=-0.126 Sum_probs=27.7
Q ss_pred eEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCC
Q 023422 181 KVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQG 228 (282)
Q Consensus 181 ~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~ 228 (282)
--||++|.||...... .+.+ +.+.+.+.+- ++++.++||+-+.
T Consensus 162 tDILITHgPP~GhLD~---~vGC-~~Ll~~I~rV-KPKyHVFGh~~~~ 204 (234)
T PHA03008 162 CDILITASPPFAILDD---DLAC-GDLFSKVIKI-KPKFHIFNGLTQF 204 (234)
T ss_pred CCEEEeCCCCcccccc---ccCc-HHHHHHHHHh-CCcEEEeCCcccc
Confidence 4499999999876531 2223 4455555555 3799999995543
No 143
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=65.93 E-value=29 Score=24.71 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=37.3
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhc
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLK 84 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~ 84 (282)
.++++.+++. +..+||++.|... ...+.+....+..++|++...|+-+ ++-..++
T Consensus 22 ~~v~kai~~g-kaklViiA~D~~~---------~~~~~i~~~c~~~~Ip~~~~~~tk~-------eLG~a~G 76 (99)
T PRK01018 22 KRTIKAIKLG-KAKLVIVASNCPK---------DIKEDIEYYAKLSGIPVYEYEGSSV-------ELGTLCG 76 (99)
T ss_pred HHHHHHHHcC-CceEEEEeCCCCH---------HHHHHHHHHHHHcCCCEEEECCCHH-------HHHHHhC
Confidence 3456666666 8999999999642 4445566666667899987766443 4555555
No 144
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=64.95 E-value=11 Score=34.72 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=26.5
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
-+|.+-+.||+.|..... +.+++.|... ..+=.-+||||.
T Consensus 190 vVDhLHiVGDIyDRGP~p-------d~Imd~L~~y-hsvDiQWGNHDi 229 (648)
T COG3855 190 VVDHLHIVGDIYDRGPYP-------DKIMDTLINY-HSVDIQWGNHDI 229 (648)
T ss_pred hhhheeeecccccCCCCc-------hHHHHHHhhc-ccccccccCcce
Confidence 689999999999843211 2444444433 245567899995
No 145
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=62.34 E-value=36 Score=23.29 Aligned_cols=49 Identities=16% Similarity=0.062 Sum_probs=35.4
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
.+.++.+.+. +..+||++.|..+ ...+.+....+..++|++.+.-+.|+
T Consensus 17 ~~v~kai~~g-kaklViiA~D~~~---------~~~~~i~~~c~~~~Vp~~~~~s~~eL 65 (82)
T PRK13602 17 KQTVKALKRG-SVKEVVVAEDADP---------RLTEKVEALANEKGVPVSKVDSMKKL 65 (82)
T ss_pred HHHHHHHHcC-CeeEEEEECCCCH---------HHHHHHHHHHHHcCCCEEEECCHHHH
Confidence 4556667666 8999999999973 45556666777778999887744443
No 146
>PF10922 DUF2745: Protein of unknown function (DUF2745); InterPro: IPR020147 The T7-like bacteriophage gene 1.2 protein is an inhibitor of the Escherichia coli dGTP triphosphohydrolase (dGTPase) and is implicated in DNA replication.
Probab=61.89 E-value=11 Score=25.73 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=27.2
Q ss_pred CcchhhhHHHHHHHHHHHHhhcCCccEEEEcCCCCC
Q 023422 1 MGWYYRHSLLVLQNAVQRWNNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d 36 (282)
|+|.|..+|..++.+++.+.+. |++|+.-+.-+
T Consensus 1 MgrlYSGNLnafKaA~~Rl~~l---D~~V~~e~~~~ 33 (85)
T PF10922_consen 1 MGRLYSGNLNAFKAATDRLYEL---DFAVISEEFYY 33 (85)
T ss_pred CCccccCCHHHHHHHHHHHhhC---cEEEEEEeecc
Confidence 6788999999999999988887 88887766654
No 147
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=61.16 E-value=36 Score=28.41 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=39.0
Q ss_pred HHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHH-hcCCCEEEecCCCCC
Q 023422 12 LQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFE-KFNGPAYHMIGNHCL 71 (282)
Q Consensus 12 l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~-~~~~pv~~v~GNHD~ 71 (282)
..+..+.+.+. .-|++++.|=.- -+.+..+.+...++ ....|++..||||+.
T Consensus 30 ~~ei~~~~~~~-GTDaImIGGS~g-------vt~~~~~~~v~~ik~~~~lPvilfP~~~~~ 82 (240)
T COG1646 30 ADEIAEAAAEA-GTDAIMIGGSDG-------VTEENVDNVVEAIKERTDLPVILFPGSPSG 82 (240)
T ss_pred cHHHHHHHHHc-CCCEEEECCccc-------ccHHHHHHHHHHHHhhcCCCEEEecCChhc
Confidence 34455566666 789999988653 35577777888887 567899999999995
No 148
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=57.81 E-value=55 Score=23.74 Aligned_cols=52 Identities=12% Similarity=0.097 Sum_probs=36.2
Q ss_pred HHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC--CCEEEecCCCCC
Q 023422 12 LQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN--GPAYHMIGNHCL 71 (282)
Q Consensus 12 l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~--~pv~~v~GNHD~ 71 (282)
.+.+++.+.+. +||+|.++.=... .......+.+.+++.. ...+++-|+|-.
T Consensus 39 ~~~l~~~~~~~-~pdvV~iS~~~~~-------~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 39 PEEIVEAAKEE-DADAIGLSGLLTT-------HMTLMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred HHHHHHHHHHc-CCCEEEEeccccc-------cHHHHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 34566677777 8999999876553 4455666777777654 366889999864
No 149
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=57.60 E-value=47 Score=28.81 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHhh-c---CCccEEEEcCCCCCCC--CCCc---ccHHHHHHHHH-HHHhc-----CCCEEEecCCCCC
Q 023422 7 HSLLVLQNAVQRWNN-H---QKLKFVIHFGDIVDGF--CPKD---QSLEAVKKVVN-EFEKF-----NGPAYHMIGNHCL 71 (282)
Q Consensus 7 ~~~~~l~~~~~~~~~-~---~~~d~vi~~GDi~d~~--~~~~---~~~~~~~~~~~-~l~~~-----~~pv~~v~GNHD~ 71 (282)
..+++|+++++-... . ..|-++|+.|+.+... .... ...+.++.+.. .+.+. .+.+++|||-+|-
T Consensus 42 ~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~L~~~s~fVFVPGpnDP 121 (291)
T PTZ00235 42 YTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKLILEHCYLIFIPGINDP 121 (291)
T ss_pred HHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChHHHhcCeEEEECCCCCC
Confidence 346778888887742 1 1488999999999742 0011 11234444443 23332 2689999999997
Q ss_pred CC
Q 023422 72 YN 73 (282)
Q Consensus 72 ~~ 73 (282)
+.
T Consensus 122 w~ 123 (291)
T PTZ00235 122 CA 123 (291)
T ss_pred Cc
Confidence 53
No 150
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=57.52 E-value=27 Score=24.06 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHhhc-CCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCC
Q 023422 5 YRHSLLVLQNAVQRWNNH-QKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGN 68 (282)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~-~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GN 68 (282)
|++....+.++++.+.+. ++-..++++|++-+-+ ....+....+.+.+.....-++.+..|
T Consensus 20 ~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g---~~~~~~~~~~~~~~~~~~d~vi~~~~~ 81 (91)
T PF02875_consen 20 YAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLG---SKDKDFHEEIGELAAQLADVVILTGDN 81 (91)
T ss_dssp T--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-H---TSHHHCHHHHHHHHTTCSSEEEEETSB
T ss_pred CCCCHHHHHHHHHHHHHhccCCcEEEEEccccccc---cccHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 567788888888888775 3567888888766411 123333445555555543344444443
No 151
>PHA00450 host dGTPase inhibitor
Probab=54.84 E-value=18 Score=24.58 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=24.8
Q ss_pred CcchhhhHHHHHHHHHHHHhhcCCccEEEEcCCCC
Q 023422 1 MGWYYRHSLLVLQNAVQRWNNHQKLKFVIHFGDIV 35 (282)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~ 35 (282)
|+|.|...|..++.+++.+.+. |+.|+.-+.-
T Consensus 1 MGRLYSGNL~afKaA~~RL~q~---D~aVi~e~~~ 32 (85)
T PHA00450 1 MGRLYSGNLNAFKAATARLFEH---DVAVIVEEFY 32 (85)
T ss_pred CCccccCcHHHHHHHHHHHHhc---ceeEEEeehh
Confidence 6788888888888888888876 7777766554
No 152
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=53.57 E-value=49 Score=29.61 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=31.0
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+||.||++|=+.. .....+.+.+.++.+ +||..+||.-++
T Consensus 293 ~pD~IV~gGGI~e-------~~~l~~~I~~~l~~~-a~v~~~pg~~e~ 332 (351)
T TIGR02707 293 KVDAIVLTGGLAY-------SKYFVSEIIKRVSFI-APVLVYPGEDEM 332 (351)
T ss_pred CCCEEEEcchhhc-------CHHHHHHHHHHHHhh-CCEEEeCCcHHH
Confidence 6899999999874 234567777777777 899999995553
No 153
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=53.54 E-value=59 Score=22.33 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEE
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYH 64 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~ 64 (282)
.+.++.+.+. +..+||++.|..+ +..+.+....+..++|+.+
T Consensus 14 ~~vlkaIk~g-kakLViiA~Da~~---------~~~k~i~~~c~~~~Vpv~~ 55 (82)
T PRK13601 14 KQTLKAITNC-NVLQVYIAKDAEE---------HVTKKIKELCEEKSIKIVY 55 (82)
T ss_pred HHHHHHHHcC-CeeEEEEeCCCCH---------HHHHHHHHHHHhCCCCEEE
Confidence 3456666666 8999999999963 5556677777777889953
No 154
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=52.98 E-value=67 Score=23.71 Aligned_cols=50 Identities=20% Similarity=0.121 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 12 LQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 12 l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
...+++.+.+. +..+|+++.|.. -.+....+-...+..++|+.+++-=.+
T Consensus 32 ~~e~~Kai~~g-~a~LVviA~Dv~--------P~~~~~~l~~lc~~~~vpyv~V~sk~~ 81 (116)
T COG1358 32 TNEVTKAIERG-KAKLVVIAEDVS--------PEELVKHLPALCEEKNVPYVYVGSKKE 81 (116)
T ss_pred HHHHHHHHHcC-CCcEEEEecCCC--------HHHHHHHHHHHHHhcCCCEEEeCCHHH
Confidence 34455566665 789999999996 134455555666668899998875433
No 155
>PRK06683 hypothetical protein; Provisional
Probab=52.39 E-value=64 Score=22.10 Aligned_cols=44 Identities=14% Similarity=0.073 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEec
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMI 66 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~ 66 (282)
.+.++.+.+. +...||++.|.-+ ...+.+.+..+..++|++.++
T Consensus 17 ~~v~kaik~g-kaklViiA~Da~~---------~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 17 KRTLEAIKNG-IVKEVVIAEDADM---------RLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred HHHHHHHHcC-CeeEEEEECCCCH---------HHHHHHHHHHHhcCCCEEEEC
Confidence 3456666666 8999999999974 345566666677788997765
No 156
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=52.30 E-value=10 Score=34.62 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=23.3
Q ss_pred EEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 29 IHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 29 i~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
|+.||.+|.. ..+-+.+-.++..+-..+..++...||||-
T Consensus 197 vFNGDFVDRG---k~siEvLmiL~a~~lv~P~~~~LNRGNHED 236 (631)
T KOG0377|consen 197 VFNGDFVDRG---KRSIEVLMILFALYLVYPNAVHLNRGNHED 236 (631)
T ss_pred eecCchhhcc---ccchhhHHHHHHHHhcCchhhhccCCchHH
Confidence 3455555521 223344444444444556789999999994
No 157
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=50.99 E-value=62 Score=27.11 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecC
Q 023422 7 HSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 67 (282)
.+|+.+...+....+..+.-+=+++||-. -.....+..+.|++.++|+-.+||
T Consensus 59 ~tLeeIi~~m~~a~~~Gk~VvRLhSGDps--------iYgA~~EQm~~L~~~gI~yevvPG 111 (254)
T COG2875 59 LTLEEIIDLMVDAVREGKDVVRLHSGDPS--------IYGALAEQMRELEALGIPYEVVPG 111 (254)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeecCChh--------HHHHHHHHHHHHHHcCCCeEEeCC
Confidence 34555556655555553555668999986 344555667788889999999999
No 158
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=50.97 E-value=11 Score=30.89 Aligned_cols=66 Identities=20% Similarity=0.125 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCC----CCcccccC-HHHHHHHHHccCcEEEEEeCcccCCCcc
Q 023422 162 KEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSA----SPEALLWN-CNEVMDVIHRYNCVKVCLAGHDHQGGHS 231 (282)
Q Consensus 162 ~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~----~~~~~~~~-~~~~~~~l~~~~~v~~~~~GH~H~~~~~ 231 (282)
.+.++||.+.-...... -++|.|..+.+... .+...... ...+.+.+...+ .+++++||||.....
T Consensus 112 ~~~~~~L~~lP~~~~~~---~~~fvHag~~~~w~r~y~~~~~~~~~~~~~~~~~l~~~~-~~~iv~GHTh~~~~~ 182 (208)
T cd07425 112 GELGRWLRSKPVIVKVN---DTLFVHGGLGPLWYRGYSKETSDKECAAAHLDKVLERLG-AKRMVVGHTPQEGGI 182 (208)
T ss_pred cHHHHHHHhCCeEEEEC---CEEEEeCCcHHHHhhHhhhhhhhccchHHHHHHHHHHcC-CCeEEEcCeeeecCc
Confidence 34467766543322211 26678987633210 00000000 013556677775 799999999988654
No 159
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=49.29 E-value=57 Score=22.68 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEec
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMI 66 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~ 66 (282)
.++.+.+... ++.+||++.|... ..... .+.....+.++|++.++
T Consensus 21 ~~v~k~l~~~-~~~lvilA~d~~~------~~~~~--~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 21 KEVLKALKKG-KAKLVILAEDCSP------DSIKK--HLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHTT-CESEEEEETTSSS------GHHHH--HHHHHHHHTTEEEEEES
T ss_pred HHHHHHHHcC-CCcEEEEcCCCCh------hhhcc--cchhheeccceeEEEEC
Confidence 4556666666 8999999999985 11111 24444456678998876
No 160
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=48.25 E-value=84 Score=23.10 Aligned_cols=49 Identities=6% Similarity=-0.083 Sum_probs=35.8
Q ss_pred HHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC--CCEEEecCC
Q 023422 12 LQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN--GPAYHMIGN 68 (282)
Q Consensus 12 l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~--~pv~~v~GN 68 (282)
.+.+++.+.+. +||+|++++-.. ...+....+.+.+++.+ ...+++-|+
T Consensus 39 ~e~~~~~a~~~-~~d~V~iS~~~~-------~~~~~~~~~~~~L~~~~~~~i~i~~GG~ 89 (122)
T cd02071 39 PEEIVEAAIQE-DVDVIGLSSLSG-------GHMTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred HHHHHHHHHHc-CCCEEEEcccch-------hhHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 34667777787 999999988765 35566777788887763 456778886
No 161
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=48.16 E-value=27 Score=29.20 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.3
Q ss_pred cCCCEEEecCCCCCC
Q 023422 58 FNGPAYHMIGNHCLY 72 (282)
Q Consensus 58 ~~~pv~~v~GNHD~~ 72 (282)
++..|.++.||||..
T Consensus 126 inknvvvlagnhein 140 (318)
T PF13258_consen 126 INKNVVVLAGNHEIN 140 (318)
T ss_pred cccceEEEecCceec
Confidence 346899999999973
No 162
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=47.28 E-value=37 Score=26.17 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHH
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKV 51 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~ 51 (282)
.+..+.+.++++.+.+..+.|+||.+|-..-| ..|...+.++.+
T Consensus 43 ~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g--~~D~t~~al~~~ 86 (152)
T cd00886 43 PDDKDEIREALIEWADEDGVDLILTTGGTGLA--PRDVTPEATRPL 86 (152)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC--CCcCcHHHHHHH
Confidence 45667777877766552258999999998753 233344444443
No 163
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=46.93 E-value=51 Score=24.29 Aligned_cols=45 Identities=16% Similarity=0.072 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEec
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMI 66 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~ 66 (282)
.++++.+.+. +..+||+++|... . .....+....+..++|++++.
T Consensus 32 ~~v~kaikkg-ka~LVilA~D~s~------~--~~~~~i~~lc~~~~Ip~~~~~ 76 (117)
T TIGR03677 32 NEVTKAVERG-IAKLVVIAEDVEP------P--EIVAHLPALCEEKGIPYVYVK 76 (117)
T ss_pred HHHHHHHHcC-CccEEEEeCCCCc------H--HHHHHHHHHHHHcCCCEEEeC
Confidence 3445555665 7899999999974 1 223455556666778965544
No 164
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=46.26 E-value=1.1e+02 Score=23.89 Aligned_cols=32 Identities=9% Similarity=0.268 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVDG 37 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~ 37 (282)
.+..+.+.++++.+....+.|+||.+|-..-|
T Consensus 45 ~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g 76 (163)
T TIGR02667 45 KDDIYQIRAQVSAWIADPDVQVILITGGTGFT 76 (163)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 46677888888877532278999999998753
No 165
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=46.14 E-value=86 Score=22.78 Aligned_cols=55 Identities=16% Similarity=0.003 Sum_probs=36.3
Q ss_pred HHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcC
Q 023422 14 NAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKI 85 (282)
Q Consensus 14 ~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~ 85 (282)
++++.+... ++.+||++.|..+ ...+.+.......++|++...|+-+ ++-..++.
T Consensus 32 ~vlkalk~g-kaklViiA~D~~~---------~~kkki~~~~~~~~Vpv~~~~~t~~-------eLG~A~Gk 86 (108)
T PTZ00106 32 STLKALRNG-KAKLVIISNNCPP---------IRRSEIEYYAMLSKTGVHHYAGNNN-------DLGTACGR 86 (108)
T ss_pred HHHHHHHcC-CeeEEEEeCCCCH---------HHHHHHHHHHhhcCCCEEEeCCCHH-------HHHHHhCC
Confidence 455666666 8999999999974 3344455555556789976666444 56666653
No 166
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=44.96 E-value=83 Score=24.80 Aligned_cols=57 Identities=11% Similarity=-0.018 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEec
Q 023422 7 HSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMI 66 (282)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~ 66 (282)
-++..+.++++.+.+.+++..|++.++-.-+ .......+..+++.+...+.||++..
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg---~~~~~~~~~~~i~~~~~~~kpVia~v 78 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRVNSPGG---SVTASEVIRAELAAARAAGKPVVASG 78 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEeeCCCc---CHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3567888888888876678889998864321 11122333445555666678998865
No 167
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=44.95 E-value=51 Score=29.36 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=22.0
Q ss_pred HHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCC
Q 023422 17 QRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGN 68 (282)
Q Consensus 17 ~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GN 68 (282)
+.+.+. +||+|++.||-.. .+..++- ...+++||.-+-|=
T Consensus 61 ~~~~~~-~Pd~Vlv~GD~~~----------~la~ala-A~~~~ipv~HieaG 100 (346)
T PF02350_consen 61 DVLERE-KPDAVLVLGDRNE----------ALAAALA-AFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHH-T-SEEEEETTSHH----------HHHHHHH-HHHTT-EEEEES--
T ss_pred HHHHhc-CCCEEEEEcCCch----------HHHHHHH-HHHhCCCEEEecCC
Confidence 344556 9999999999973 2222211 11356898877653
No 168
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=44.34 E-value=1e+02 Score=21.40 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 12 LQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 12 l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
..++++.+.+. .||++++-.++.+ ....+..+.+.+.. ..+|++++..++|
T Consensus 32 ~~~~~~~~~~~-~~d~iiid~~~~~-----~~~~~~~~~i~~~~--~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 32 GEEALELLKKH-PPDLIIIDLELPD-----GDGLELLEQIRQIN--PSIPIIVVTDEDD 82 (112)
T ss_dssp HHHHHHHHHHS-TESEEEEESSSSS-----SBHHHHHHHHHHHT--TTSEEEEEESSTS
T ss_pred HHHHHHHhccc-CceEEEEEeeecc-----cccccccccccccc--ccccEEEecCCCC
Confidence 34566667777 7999999988876 23333333332222 3368888887776
No 169
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=43.39 E-value=62 Score=27.33 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhcC-CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEe
Q 023422 10 LVLQNAVQRWNNHQ-KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHM 65 (282)
Q Consensus 10 ~~l~~~~~~~~~~~-~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v 65 (282)
++|++.+.=+.... -||++++.-=.-+ ..+....+++++||+++
T Consensus 141 ~kL~k~lgGIk~m~~~Pd~l~ViDp~~e------------~iAv~EA~klgIPVvAl 185 (252)
T COG0052 141 EKLEKSLGGIKDMKGLPDVLFVIDPRKE------------KIAVKEANKLGIPVVAL 185 (252)
T ss_pred HHHHHhhcchhhccCCCCEEEEeCCcHh------------HHHHHHHHHcCCCEEEE
Confidence 34444443333321 3888887532221 34555666788887654
No 170
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=43.02 E-value=71 Score=29.54 Aligned_cols=59 Identities=15% Similarity=0.061 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecC
Q 023422 5 YRHSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 67 (282)
|++....++++++.+.+. ...-++++||+.+-. ..+.+....+.+.+...++...++.|
T Consensus 334 Yn~nP~s~~aaL~~l~~~-~~r~i~VlG~m~elG---~~~~~~h~~~~~~~~~~~~d~v~~~G 392 (453)
T PRK10773 334 YNANVGSMTAAAQVLAEM-PGYRVMVVGDMAELG---AESEACHRQVGEAAKAAGIDKVLSVG 392 (453)
T ss_pred CCCCHHHHHHHHHHHHhC-CCCEEEEECChhhcc---hHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 455556666666666554 223456666666411 22344444555555554444444444
No 171
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=42.31 E-value=1.2e+02 Score=22.45 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEec
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMI 66 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~ 66 (282)
.++++.+.+. +..+||++.|... . .....+....+..++|+.++.
T Consensus 36 ~~v~kaikkg-kakLVilA~D~s~------~--~i~~~~~~lc~~~~Vp~~~~~ 80 (122)
T PRK04175 36 NETTKAVERG-IAKLVVIAEDVDP------E--EIVAHLPLLCEEKKIPYVYVP 80 (122)
T ss_pred HHHHHHHHcC-CccEEEEeCCCCh------H--HHHHHHHHHHHHcCCCEEEEC
Confidence 3455566665 7899999999973 1 223456666666788975554
No 172
>PRK07714 hypothetical protein; Provisional
Probab=41.49 E-value=1.2e+02 Score=21.50 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKI 85 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~ 85 (282)
.++.+.+.+. ++-+||++.|..+ ...+.+.+.....++|++.+ | +..++-..++.
T Consensus 24 ~~v~~al~~g-~~~lViiA~D~s~---------~~~~ki~~~~~~~~vp~~~~-~-------sk~eLG~a~Gk 78 (100)
T PRK07714 24 ELVLKEVRSG-KAKLVLLSEDASV---------NTTKKITDKCTYYNVPMRKV-E-------NRQQLGHAIGK 78 (100)
T ss_pred HHHHHHHHhC-CceEEEEeCCCCH---------HHHHHHHHHHHhcCCCEEEe-C-------CHHHHHHHhCC
Confidence 3455566665 7899999999975 33444555555567898654 3 23356555653
No 173
>PRK03011 butyrate kinase; Provisional
Probab=40.46 E-value=1.1e+02 Score=27.40 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=32.0
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+||.||++|=+.. +....+.+.+.+..+ .|+..+||+.+.
T Consensus 295 dpD~IVlgGGI~~-------~~~l~~~I~~~l~~~-~pv~i~p~~~e~ 334 (358)
T PRK03011 295 KVDAIVLTGGLAY-------SKRLVERIKERVSFI-APVIVYPGEDEM 334 (358)
T ss_pred CCCEEEEeCcccc-------CHHHHHHHHHHHHhh-CCeEEEeCCCHH
Confidence 6999999998873 456666777777766 699999999885
No 174
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=39.92 E-value=55 Score=24.49 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHH
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKK 50 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~ 50 (282)
.++.+.+++.++.+.+ +.|+||.+|-+.-+ ..+...+.++.
T Consensus 42 ~Dd~~~i~~~i~~~~~--~~DlvittGG~g~g--~~D~t~~ai~~ 82 (133)
T cd00758 42 PDDADSIRAALIEASR--EADLVLTTGGTGVG--RRDVTPEALAE 82 (133)
T ss_pred CCCHHHHHHHHHHHHh--cCCEEEECCCCCCC--CCcchHHHHHH
Confidence 4566777788777655 37999999998742 33334444433
No 175
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=39.12 E-value=74 Score=26.82 Aligned_cols=44 Identities=11% Similarity=0.256 Sum_probs=26.7
Q ss_pred EEEcCCCC-CCCCCC--cccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 28 VIHFGDIV-DGFCPK--DQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 28 vi~~GDi~-d~~~~~--~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
++++||.. .+.++. ..+.+.+-..++.+..++..+.+.|| |++.
T Consensus 122 ~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~kl~~l~~~t~i~pg-H~y~ 168 (251)
T PRK10241 122 YLFCGDTLFSGGCGRLFEGTASQMYQSLKKINALPDDTLICCA-HEYT 168 (251)
T ss_pred cEEEcCeeccCCcCCCCCCCHHHHHHHHHHHHcCCCCEEEECC-CCCh
Confidence 58899955 322222 23445555555566667667777888 9873
No 176
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=38.51 E-value=58 Score=26.51 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=22.4
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCE--------------EEecCCCCC
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPA--------------YHMIGNHCL 71 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv--------------~~v~GNHD~ 71 (282)
.||+||+++=..+ ..+.....++++|+ |+||||.|-
T Consensus 108 ~Pdlliv~dp~~~------------~~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds 157 (196)
T TIGR01012 108 EPEVVVVTDPRAD------------HQALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKG 157 (196)
T ss_pred CCCEEEEECCccc------------cHHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCch
Confidence 5777777532221 24555666677776 677888884
No 177
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=38.29 E-value=1.3e+02 Score=22.58 Aligned_cols=49 Identities=12% Similarity=-0.001 Sum_probs=35.5
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCC--CEEEecCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNG--PAYHMIGNH 69 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~--pv~~v~GNH 69 (282)
+++++.+.+. ++|++.+++=... ..+....+.+.|++.+. ..+++-||-
T Consensus 43 e~~v~aa~e~-~adii~iSsl~~~-------~~~~~~~~~~~L~~~g~~~i~vivGG~~ 93 (132)
T TIGR00640 43 EEIARQAVEA-DVHVVGVSSLAGG-------HLTLVPALRKELDKLGRPDILVVVGGVI 93 (132)
T ss_pred HHHHHHHHHc-CCCEEEEcCchhh-------hHHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 4667777777 8999999887763 56677888888887643 446666654
No 178
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=37.78 E-value=1.6e+02 Score=23.98 Aligned_cols=57 Identities=12% Similarity=0.214 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC--CCEEEecCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN--GPAYHMIGNHC 70 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~--~pv~~v~GNHD 70 (282)
+...+.+.++.+.+.+++..|++.+|-.. ........+.+.+..++ .||++.....-
T Consensus 14 s~~~l~~~l~~a~~d~~i~~vvl~~~s~G------g~~~~~~~l~~~i~~~~~~kpvia~v~g~a 72 (207)
T TIGR00706 14 SPEDFDKKIKRIKDDKSIKALLLRINSPG------GTVVASEEIYEKLKKLKAKKPVVASMGGVA 72 (207)
T ss_pred CHHHHHHHHHHHhhCCCccEEEEEecCCC------CCHHHHHHHHHHHHHhcCCCCEEEEECCcc
Confidence 45677778887776557889999887542 34455666777777765 89998775443
No 179
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=37.64 E-value=69 Score=25.20 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=26.9
Q ss_pred HHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecC
Q 023422 16 VQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 16 ~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 67 (282)
++.+... +||+||..+-..+ . ...+.|++.++|++++..
T Consensus 62 ~E~ll~l-~PDlii~~~~~~~---------~---~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 62 VELIVAL-KPDLVILYGGFQA---------Q---TILDKLEQLGIPVLYVNE 100 (186)
T ss_pred HHHHhcc-CCCEEEEecCCCc---------h---hHHHHHHHcCCCEEEeCC
Confidence 4555666 8999887543221 1 466778888899999864
No 180
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=37.60 E-value=1.3e+02 Score=25.58 Aligned_cols=49 Identities=12% Similarity=0.041 Sum_probs=32.9
Q ss_pred HHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 14 NAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 14 ~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
.++..+.+. +..+||+++|... .+....+-..++..++|+..+.+-.++
T Consensus 139 ~VtkaIekk-KAkLVIIA~DVsP--------ie~vk~LpaLCrk~~VPY~iVktKaeL 187 (263)
T PTZ00222 139 EVTRAIEKK-QARMVVIANNVDP--------VELVLWMPNLCRANKIPYAIVKDMARL 187 (263)
T ss_pred HHHHHHHcC-CceEEEEeCCCCH--------HHHHHHHHHHHHhcCCCEEEECCHHHH
Confidence 344555555 7899999999974 122234666677778999888875543
No 181
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=37.54 E-value=88 Score=24.20 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC-----CCEEEecCCCCC
Q 023422 11 VLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN-----GPAYHMIGNHCL 71 (282)
Q Consensus 11 ~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~-----~pv~~v~GNHD~ 71 (282)
..+++.+.+.+. +|+.|++.|.-. .+.+..+.+.+.+.+.. .++-++..|-+.
T Consensus 51 ~~~~l~~~i~~~-kP~vI~v~g~~~-------~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~~~~ 108 (150)
T PF14639_consen 51 DMERLKKFIEKH-KPDVIAVGGNSR-------ESRKLYDDVRDIVEELDEDEQMPPIPVVIVDDEV 108 (150)
T ss_dssp HHHHHHHHHHHH---SEEEE--SST-------HHHHHHHHHHHHHHHTTB-TTS-B--EEE---TT
T ss_pred HHHHHHHHHHHc-CCeEEEEcCCCh-------hHHHHHHHHHHHHHHhhhcccCCCceEEEECcHH
Confidence 344444556677 899999988544 45666666666666542 244445555553
No 182
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=36.17 E-value=40 Score=29.19 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=28.9
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
++|+++++|-+.. .....+.+.+.+.-+ .||+..||--|+
T Consensus 296 ~vDaIvLTGGiA~-------~~~f~~~I~~~v~~i-apv~v~PGE~El 335 (358)
T COG3426 296 KVDAIVLTGGIAY-------EKLFVDAIEDRVSWI-APVIVYPGEDEL 335 (358)
T ss_pred CCCEEEEecchhh-------HHHHHHHHHHHHhhh-cceEecCCchHH
Confidence 8999999999973 334444444444433 799999998776
No 183
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.59 E-value=1e+02 Score=21.60 Aligned_cols=35 Identities=31% Similarity=0.312 Sum_probs=27.9
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEec
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMI 66 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~ 66 (282)
++|+||+.=|.+++ .....+.+..++.++|++++.
T Consensus 48 ~aD~VIv~t~~vsH--------~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 48 KADLVIVFTDYVSH--------NAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred CCCEEEEEeCCcCh--------HHHHHHHHHHHHcCCcEEEEC
Confidence 67999999888854 556677778888889999885
No 184
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=35.35 E-value=47 Score=25.34 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=22.7
Q ss_pred CccEEEEcC-CCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 24 KLKFVIHFG-DIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 24 ~~d~vi~~G-Di~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+.|++|++| -...+..........++...+.+++-..+.+.+.|-...
T Consensus 1 ~aD~ivVlG~~~~~~~~~~~~~~~R~~~a~~L~~~g~~~~il~SGg~~~ 49 (155)
T PF02698_consen 1 KADAIVVLGSALDPDGQLSPESRERLDEAARLYKAGYAPRILFSGGYGH 49 (155)
T ss_dssp --SEEEEES-----------S-HHHHHHHHHHHH-HHT--EEEE--SST
T ss_pred CCcEEEECCcCccccccccHhHHHHHHHHHHHHhcCCCCeEEECCCCCC
Confidence 468999999 333322333345666778888888766777787774443
No 185
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=35.22 E-value=1e+02 Score=28.69 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCC
Q 023422 5 YRHSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGN 68 (282)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GN 68 (282)
|+-+.+.+..+++.+...+...-++++||+..-. ..+.+.-+.+.+.+...++...++.|.
T Consensus 335 YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ELG---~~s~~~H~~v~~~~~~~~~d~v~~~G~ 395 (451)
T COG0770 335 YNANPDSMRAALDLLAALPGRKGIAVLGDMLELG---EESEELHEEVGEYAVEAGIDLVFLVGE 395 (451)
T ss_pred CCCCHHHHHHHHHHHhhCccCCcEEEeCChhhhC---ccHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 4556677777777776653222277778877510 235566666666666666667777776
No 186
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=34.97 E-value=71 Score=29.29 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d 36 (282)
.+..+.+.++++.+. . +.|+||.+|-..-
T Consensus 227 ~Dd~~~i~~~l~~a~-~-~~DlvIttGG~S~ 255 (411)
T PRK10680 227 RDDPHALRAAFIEAD-S-QADVVISSGGVSV 255 (411)
T ss_pred CCCHHHHHHHHHHhc-c-CCCEEEEcCCCCC
Confidence 456677778877653 3 6899999999885
No 187
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=34.74 E-value=99 Score=27.36 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=19.3
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEE
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYH 64 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~ 64 (282)
.||+||+++=.-+ ..+.+....+++|++.
T Consensus 152 ~Pd~viv~d~~~e------------~~AI~EA~kl~IPvIa 180 (326)
T PRK12311 152 LPDLLFVIDTNKE------------DIAIQEAQRLGIPVAA 180 (326)
T ss_pred CCCEEEEeCCccc------------hHHHHHHHHcCCCEEE
Confidence 6999998764433 3566667777777643
No 188
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=34.68 E-value=65 Score=29.60 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d 36 (282)
.+..+.+.++++.+.+ +.|+||.+|-..-
T Consensus 243 ~Dd~~~i~~~l~~a~~--~~DlIItTGG~S~ 271 (419)
T PRK14690 243 GDDRAALAARLDRAAA--EADVILTSGGASA 271 (419)
T ss_pred CCCHHHHHHHHHHhCc--cCCEEEEcCCccC
Confidence 4566778888877743 5799999999875
No 189
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=34.06 E-value=1.2e+02 Score=29.06 Aligned_cols=57 Identities=12% Similarity=-0.035 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC--CCEEEecC--CCCCC
Q 023422 7 HSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN--GPAYHMIG--NHCLY 72 (282)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~--~pv~~v~G--NHD~~ 72 (282)
+..+.++++++.+.+. ++|.+|+.|.-- +......+.+.+.+.+ ++|+-||+ ..|+.
T Consensus 174 ~~~e~~~~~~~~l~~l-~Id~LViIGGdd--------S~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~ 234 (568)
T PLN02251 174 ETPEQFKQAEETATKL-DLDGLVVIGGDD--------SNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLK 234 (568)
T ss_pred CCHHHHHHHHHHHHHc-CCCEEEEeCCch--------HHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCC
Confidence 3456889999999999 899987777654 3333444555555444 79999998 45553
No 190
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=33.68 E-value=1.5e+02 Score=25.26 Aligned_cols=47 Identities=15% Similarity=0.034 Sum_probs=31.0
Q ss_pred HHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHH-HHHHHhcCCCEEEecCCCC
Q 023422 14 NAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKV-VNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 14 ~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~-~~~l~~~~~pv~~v~GNHD 70 (282)
.++..+... +..+||+++|... .....+ -..++..++|+..+.+=-+
T Consensus 139 ~VtklIekk-KAkLVIIA~DVsP---------~t~kk~LP~LC~k~~VPY~iv~sK~e 186 (266)
T PTZ00365 139 HVTDLVEYK-KAKLVVIAHDVDP---------IELVCFLPALCRKKEVPYCIIKGKSR 186 (266)
T ss_pred HHHHHHHhC-CccEEEEeCCCCH---------HHHHHHHHHHHhccCCCEEEECCHHH
Confidence 344455555 8899999999973 333333 3566667889988776433
No 191
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=33.61 E-value=1e+02 Score=30.97 Aligned_cols=60 Identities=25% Similarity=0.264 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHHHhhcCC-ccEEEEcCCCCC-CCCCCcccHHHHHHHHHHHHhcCCCEEEecCC
Q 023422 5 YRHSLLVLQNAVQRWNNHQK-LKFVIHFGDIVD-GFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGN 68 (282)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~-~d~vi~~GDi~d-~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GN 68 (282)
|++....+.++++.+..... ...++++||+.. | ..+...++.+.+.+....+..+++.|.
T Consensus 338 yn~nP~s~~aaL~~l~~~~~~~~~ilIlG~m~elG----~~~~~~~~~l~~~l~~~~i~~vi~~G~ 399 (822)
T PRK11930 338 YNSDLQSLDIALDFLNRRSQSKKKTLILSDILQSG----QSPEELYRKVAQLISKRGIDRLIGIGE 399 (822)
T ss_pred CCCCHHHHHHHHHHHHhcccCCCEEEEECChHhcC----chHHHHHHHHHHHHHHcCCCEEEEECH
Confidence 56778999999999986522 257899999986 3 234556667777776555555555564
No 192
>COG3910 Predicted ATPase [General function prediction only]
Probab=33.43 E-value=89 Score=25.58 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=21.6
Q ss_pred CCC-HHHHHHHHHHHHHHhhCCCeEEEEEeeCCCC
Q 023422 159 AVG-KEQIKWLDAVLQDATKLNQKVVVCCHVPLDP 192 (282)
Q Consensus 159 ~~~-~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~ 192 (282)
.++ .+|++-|. .|.++.+.+..+|+.+|.|+.-
T Consensus 158 ~LSp~RQlella-~l~~la~sGaQ~IiATHSPiLl 191 (233)
T COG3910 158 ALSPSRQLELLA-ILRDLADSGAQIIIATHSPILL 191 (233)
T ss_pred cCCHHHHHHHHH-HHHHHHhcCCeEEEEecChhhe
Confidence 444 45655444 4455545778999999999753
No 193
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=33.40 E-value=1.1e+02 Score=28.45 Aligned_cols=51 Identities=10% Similarity=0.139 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC--CCEEEecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN--GPAYHMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~--~pv~~v~GNHD~ 71 (282)
+.-++.+.+. +||.|+++|=.-- ...+..-.-.+.|.+.+ .|| .+.||-+.
T Consensus 110 ~~~l~~I~~~-~PDIILLaGGtDG------G~~e~~l~NA~~La~~~~~~pI-IyAGN~~a 162 (463)
T TIGR01319 110 NKDIEAIEES-NLDIILFAGGTDG------GEEECGIHNAKMLAEHGLDCAI-IVAGNKDI 162 (463)
T ss_pred HHHHHHHhhc-CCCEEEEeCCcCC------CchHHHHHHHHHHHhcCCCCcE-EEeCCHHH
Confidence 3446677777 9999999998753 35566566667777654 674 45699883
No 194
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=32.99 E-value=1.1e+02 Score=25.43 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=31.3
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
+.|.+|++||.-. .....+-+....+++..+.++++.++..|---
T Consensus 83 ~~Dliil~Gd~Q~--~~~~gqyel~~~~Ld~a~e~g~~~IyTLGGy~ 127 (258)
T COG2047 83 ERDLIILVGDTQA--TSSEGQYELTGKILDIAKEFGARMIYTLGGYG 127 (258)
T ss_pred CCcEEEEeccccc--cCcchhHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 5699999999864 22224445555677777778888888887544
No 195
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=32.92 E-value=1.9e+02 Score=26.82 Aligned_cols=39 Identities=5% Similarity=-0.045 Sum_probs=27.0
Q ss_pred HHHccCcEEEEEeCcccCCCccccCCCCeEEeccccccC
Q 023422 210 VIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALEC 248 (282)
Q Consensus 210 ~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~ 248 (282)
.|.-++-+++++-+..-.....+..+|...++-|+++.+
T Consensus 466 aLsl~PlPdlmvl~Ds~~sf~~vt~~gC~v~NPGSF~~s 504 (525)
T KOG3818|consen 466 ALSLYPLPDLMVLADSFSSFFDVTYAGCIVINPGSFSRS 504 (525)
T ss_pred ceEeccCcceEEeecccccccccccCCceeeCCCccccc
Confidence 455566567777788777766555578877888887763
No 196
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=32.70 E-value=1.3e+02 Score=25.13 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh-cCCCEEEecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK-FNGPAYHMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~-~~~pv~~v~GNHD~ 71 (282)
..+++.+.+. ..|++++.|=. .+ ...+.+.+.+++ .+.|++..|||.+-
T Consensus 22 ~~~~~~~~~~-gtDai~VGGS~-~~--------~~~d~vv~~ik~~~~lPvilfPg~~~~ 71 (230)
T PF01884_consen 22 EEALEAACES-GTDAIIVGGSD-TG--------VTLDNVVALIKRVTDLPVILFPGSPSQ 71 (230)
T ss_dssp HHHHHHHHCT-T-SEEEEE-ST-HC--------HHHHHHHHHHHHHSSS-EEEETSTCCG
T ss_pred HHHHHHHHhc-CCCEEEECCCC-Cc--------cchHHHHHHHHhcCCCCEEEeCCChhh
Confidence 4455556666 89999999977 21 223344444444 55799999999995
No 197
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=32.64 E-value=1.9e+02 Score=20.78 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=33.9
Q ss_pred HHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcC
Q 023422 14 NAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKI 85 (282)
Q Consensus 14 ~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~ 85 (282)
++.+.+... ++-+||++-|... ..-+.+.+.....++|++.. |+- .++...++.
T Consensus 24 ~v~~aik~g-k~~lVI~A~D~s~---------~~kkki~~~~~~~~vp~~~~-~t~-------~eLg~a~Gk 77 (104)
T PRK05583 24 KCEEAIKKK-KVYLIIISNDISE---------NSKNKFKNYCNKYNIPYIEG-YSK-------EELGNAIGR 77 (104)
T ss_pred HHHHHHHcC-CceEEEEeCCCCH---------hHHHHHHHHHHHcCCCEEEe-cCH-------HHHHHHhCC
Confidence 445555665 8999999999974 33344555555566888655 533 356666653
No 198
>PRK14072 6-phosphofructokinase; Provisional
Probab=32.43 E-value=1.1e+02 Score=28.08 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC--CCEEEecCC--CCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN--GPAYHMIGN--HCLY 72 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~--~pv~~v~GN--HD~~ 72 (282)
..+..+++++.+++. ++|.+|+.|-.- +......+.+.+++.+ +||+.||+- .|+.
T Consensus 88 ~~~~~~~~~~~l~~~-~Id~LivIGGdg--------S~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~ 147 (416)
T PRK14072 88 DRAEYERLLEVFKAH-DIGYFFYNGGND--------SMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLP 147 (416)
T ss_pred ChHHHHHHHHHHHHc-CCCEEEEECChH--------HHHHHHHHHHHHHHhCCCceEEEeeecccCCCC
Confidence 356789999999999 899877776543 3344445555555445 899999995 4554
No 199
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=31.73 E-value=2.4e+02 Score=23.70 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHhhcCCccEEEEc--CCCCCCCC------CCcccHHHHHHHHHHHHhcCCCEEEec
Q 023422 7 HSLLVLQNAVQRWNNHQKLKFVIHF--GDIVDGFC------PKDQSLEAVKKVVNEFEKFNGPAYHMI 66 (282)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~~d~vi~~--GDi~d~~~------~~~~~~~~~~~~~~~l~~~~~pv~~v~ 66 (282)
+-+.++++.+..-.++-.||.|+.. -|+.+|+. ....-.+.=+.+++.++.+++|+..+.
T Consensus 231 eYLrkl~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMlt 298 (324)
T KOG1344|consen 231 EYLRKLKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLT 298 (324)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEe
Confidence 3456666666544333389998764 36776551 112333444567888888999987653
No 200
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=31.06 E-value=1.4e+02 Score=27.89 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHHHHhhcC---CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecC
Q 023422 5 YRHSLLVLQNAVQRWNNHQ---KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~---~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 67 (282)
|++....+.++++.+.+.. +-..++++||+.+-+ ..+.+..+.+.+.+.+..+..+++.|
T Consensus 346 YahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m~elg---~~~~~~h~~~~~~~~~~~~d~v~~~G 408 (479)
T PRK14093 346 YNANPASMAAALGVLGRAPVGPQGRRIAVLGDMLELG---PRGPELHRGLAEAIRANAIDLVFCCG 408 (479)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCCCEEEEECChHHcC---cHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 4555555666666555431 124555666654311 12334444444444443333333334
No 201
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=30.90 E-value=1.3e+02 Score=25.18 Aligned_cols=44 Identities=11% Similarity=0.199 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCC-CCC--cccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 27 FVIHFGDIVDGF-CPK--DQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 27 ~vi~~GDi~d~~-~~~--~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
-++++||.+-.. ++. ..+.+.+-..++.+..++....++|| |+.
T Consensus 120 ~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~l~~~~~i~pG-H~~ 166 (248)
T TIGR03413 120 PALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDTLVYCA-HEY 166 (248)
T ss_pred CEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEECC-CCc
Confidence 479999986311 111 23455555555666667666778899 885
No 202
>PRK10799 metal-binding protein; Provisional
Probab=30.62 E-value=92 Score=26.23 Aligned_cols=47 Identities=13% Similarity=-0.047 Sum_probs=25.8
Q ss_pred eEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCc
Q 023422 181 KVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGH 230 (282)
Q Consensus 181 ~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~ 230 (282)
--+|++|||+.-..... .......+....+.+.+ ..+++-||+....
T Consensus 57 ~dlIitHHP~~~~~~~~-~~~~~~~~~~~~li~~~--i~vy~~Htn~D~~ 103 (247)
T PRK10799 57 ADAVIVHHGYFWKGESP-VIRGMKRNRLKTLLAND--INLYGWHLPLDAH 103 (247)
T ss_pred CCEEEECCchhccCCCc-cccchHHHHHHHHHHCC--CeEEEEecchhhC
Confidence 44778999975332111 11011234445555554 4777899998754
No 203
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=30.60 E-value=1.3e+02 Score=23.36 Aligned_cols=45 Identities=9% Similarity=0.029 Sum_probs=31.2
Q ss_pred HHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 17 QRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 17 ~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
+.+... ++|.+++.-|-.+ ..+. -.+..++.++++|++.+.==-|
T Consensus 72 ~~l~~~-~~D~ii~VvDa~~-------l~r~-l~l~~ql~e~g~P~vvvlN~~D 116 (156)
T PF02421_consen 72 DYLLSE-KPDLIIVVVDATN-------LERN-LYLTLQLLELGIPVVVVLNKMD 116 (156)
T ss_dssp HHHHHT-SSSEEEEEEEGGG-------HHHH-HHHHHHHHHTTSSEEEEEETHH
T ss_pred HHHhhc-CCCEEEEECCCCC-------HHHH-HHHHHHHHHcCCCEEEEEeCHH
Confidence 333445 8999999999984 2233 3466677788899988875444
No 204
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=30.57 E-value=1.5e+02 Score=27.19 Aligned_cols=54 Identities=7% Similarity=-0.052 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhc--CCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKF--NGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~--~~pv~~v~GNHD~ 71 (282)
.+.++++++.+++. ++|.+|+.|--- +......+.+.+.+. ++||+-||+-=|-
T Consensus 98 ~~~~~~~~~~L~~~-~Id~Li~IGGdg--------S~~~a~~L~~~~~~~g~~i~vvgIPkTIDN 153 (403)
T PRK06555 98 ENPLKVAAERLAAD-GVDILHTIGGDD--------TNTTAADLAAYLAENGYDLTVVGLPKTIDN 153 (403)
T ss_pred hHHHHHHHHHHHHc-CCCEEEEECChh--------HHHHHHHHHHHHHHhCCCceEEEeeeeeeC
Confidence 45678899999999 899877766432 334444555555443 6899999997664
No 205
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=29.87 E-value=2.1e+02 Score=23.55 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecC
Q 023422 7 HSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 67 (282)
.++..+.+.++.+...+++..|++.+|--.+ .....+.+...++.+++.+.||++...
T Consensus 29 ~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg---~~~~~~el~~~i~~~~~~~kpVia~~~ 86 (222)
T cd07018 29 LSLRDLLEALEKAAEDDRIKGIVLDLDGLSG---GLAKLEELRQALERFRASGKPVIAYAD 86 (222)
T ss_pred ccHHHHHHHHHHHhcCCCeEEEEEECCCCCC---CHHHHHHHHHHHHHHHHhCCeEEEEeC
Confidence 3456677777777666578999999877642 122334444455555556789988654
No 206
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=28.52 E-value=2.6e+02 Score=21.36 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEec
Q 023422 7 HSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMI 66 (282)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~ 66 (282)
.+.+.+.+.++.+...++...|++..+-.- ........+.+.+..++.|++...
T Consensus 11 ~~~~~l~~~l~~a~~d~~~~~ivl~~~s~G------g~~~~~~~i~~~l~~~~kpvva~~ 64 (161)
T cd00394 11 VSADQLAAQIRFAEADNSVKAIVLEVNTPG------GRVDAGMNIVDALQASRKPVIAYV 64 (161)
T ss_pred chHHHHHHHHHHHHhCCCCceEEEEEECCC------cCHHHHHHHHHHHHHhCCCEEEEE
Confidence 345667777777776645677777655332 244455667777777778987754
No 207
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=27.69 E-value=1.7e+02 Score=25.73 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHH
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKK 50 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~ 50 (282)
.+..+.+.++++.+... ..|+||.+|-..- .+.|...+.+..
T Consensus 198 pDD~~~I~~al~~a~~~-~~DlIITTGGtg~--g~~D~tpeAl~~ 239 (312)
T PRK03604 198 PDEPAEIAAAVAAWIAE-GYALIITTGGTGL--GPRDVTPEALAP 239 (312)
T ss_pred CCCHHHHHHHHHHhhhC-CCCEEEECCCCCC--CCCccHHHHHHH
Confidence 45677788888877544 6899999999874 333334444443
No 208
>PF13941 MutL: MutL protein
Probab=27.29 E-value=1.8e+02 Score=27.07 Aligned_cols=50 Identities=12% Similarity=0.170 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC--CCEEEecCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN--GPAYHMIGNHC 70 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~--~pv~~v~GNHD 70 (282)
+.-++.+.+. +||.|+++|=.-. ...+..-.-.+.|...+ +| +.+.||-+
T Consensus 114 ~~~l~~i~~~-~PDiILLaGGtDg------G~~~~il~nA~~La~~~~~~p-VIyAGN~~ 165 (457)
T PF13941_consen 114 EEDLEEIREI-RPDIILLAGGTDG------GNKEVILHNAEMLAEANLRIP-VIYAGNKA 165 (457)
T ss_pred HHHHHHHhcc-CCCEEEEeCCccC------CchHHHHHHHHHHHhCCCCCc-EEEECCHH
Confidence 4456677777 9999999998753 35555556666776654 45 55679988
No 209
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=26.94 E-value=2.8e+02 Score=24.35 Aligned_cols=67 Identities=22% Similarity=0.374 Sum_probs=36.4
Q ss_pred cCCCCCCcchHHHHHHhhhcCCC----CCCCCCCCcccccccccccCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEee
Q 023422 115 IGWPHNHPNTLEALKFLGEKNPN----TEKNSPAGLVGLERRFLMFNGAVGKEQIKWLDAVLQDATKLNQKVVVCCHV 188 (282)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~ 188 (282)
+|.|++...+....+++.+.+-+ ..+.+| |++. .|....++++++.|.+..+.+.+.+-..+...|-
T Consensus 8 YG~PWs~e~R~~l~~f~~~~kmN~YiYAPKdDp-----yhr~--~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisP 78 (306)
T PF07555_consen 8 YGRPWSHEDRLDLIRFLGRYKMNTYIYAPKDDP-----YHRS--KWREPYPEEELAELKELADAAKANGVDFVYAISP 78 (306)
T ss_dssp SSS---HHHHHHHHHHHHHTT--EEEE--TT-T-----TTTT--TTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBG
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceEEECCCCCh-----HHHh--hhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECc
Confidence 46666666666666666654433 333444 4554 6777888999999999998887665444544453
No 210
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=26.85 E-value=1.5e+02 Score=26.52 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEE-EecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAY-HMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~-~v~GNHD~ 71 (282)
.++-+.+.+. +||+|+..||-.. .+..++ .-..+++|+. .--|++-.
T Consensus 83 ~~~~~~~~~~-~Pd~vlv~GD~~~----------~la~al-aA~~~~IPv~HveaG~rs~ 130 (365)
T TIGR03568 83 IGFSDAFERL-KPDLVVVLGDRFE----------MLAAAI-AAALLNIPIAHIHGGEVTE 130 (365)
T ss_pred HHHHHHHHHh-CCCEEEEeCCchH----------HHHHHH-HHHHhCCcEEEEECCccCC
Confidence 3333444556 8999999999973 111111 1122568998 55566743
No 211
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=26.82 E-value=1.6e+02 Score=26.16 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh--cCCCEEEecC--CCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK--FNGPAYHMIG--NHCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~--~~~pv~~v~G--NHD~~ 72 (282)
.+.++++++.+.+. ++|.+++.|..- +......+.+.+.+ .++||+.||. ..|+.
T Consensus 78 ~~~~~~~~~~l~~~-~I~~Lv~IGGd~--------s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 78 EEGRAKAAENLKKH-GIDALVVIGGDG--------SYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIK 136 (338)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEeCCHH--------HHHHHHHHHHHHHhcCCCccEEEeeecccCCCc
Confidence 45788899999999 999988888653 33444444444443 3589999998 44554
No 212
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=26.64 E-value=1.3e+02 Score=24.64 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=26.2
Q ss_pred HHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEec
Q 023422 16 VQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMI 66 (282)
Q Consensus 16 ~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~ 66 (282)
++.+... +||+|+..+...+ ....+.++++++|++.+.
T Consensus 51 ~E~i~~l-~PDlIi~~~~~~~------------~~~~~~l~~~gipvv~~~ 88 (235)
T cd01149 51 AEGVLSL-KPTLVIASDEAGP------------PEALDQLRAAGVPVVTVP 88 (235)
T ss_pred HHHhhcc-CCCEEEEcCCCCC------------HHHHHHHHHcCCeEEEec
Confidence 4555666 8999988765432 144567778888998776
No 213
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=26.61 E-value=1.9e+02 Score=25.10 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecC
Q 023422 11 VLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 11 ~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 67 (282)
.++.++....+. .-..|.+.-|++ .+.+.+..+++...+.+.|||.+.-
T Consensus 134 ~IKE~vR~~I~~-A~kVIAIVMD~F-------TD~dIf~DLleAa~kR~VpVYiLLD 182 (284)
T PF07894_consen 134 HIKEVVRRMIQQ-AQKVIAIVMDVF-------TDVDIFCDLLEAANKRGVPVYILLD 182 (284)
T ss_pred CHHHHHHHHHHH-hcceeEEEeecc-------ccHHHHHHHHHHHHhcCCcEEEEec
Confidence 345555554444 345688888998 3678888888888778899999875
No 214
>PRK07283 hypothetical protein; Provisional
Probab=26.60 E-value=2.3e+02 Score=19.95 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=33.3
Q ss_pred HHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhc
Q 023422 14 NAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLK 84 (282)
Q Consensus 14 ~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~ 84 (282)
++.+.+... ++.+||++-|..+ ...+.+.+..+..++|++.+. +..++-..++
T Consensus 25 ~v~~aik~g-k~~lVi~A~Das~---------~~~kk~~~~~~~~~Vp~~~~~--------t~~eLG~a~G 77 (98)
T PRK07283 25 LVVKAIQSG-QAKLVFLANDAGP---------NLTKKVTDKSNYYQVEVSTVF--------STLELSAAVG 77 (98)
T ss_pred HHHHHHHcC-CccEEEEeCCCCH---------HHHHHHHHHHHHcCCCEEEeC--------CHHHHHHHhC
Confidence 445555665 8899999999974 334455555555678885432 3335555555
No 215
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=26.49 E-value=2.9e+02 Score=24.30 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhh-cCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEE
Q 023422 9 LLVLQNAVQRWNN-HQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAY 63 (282)
Q Consensus 9 ~~~l~~~~~~~~~-~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~ 63 (282)
-+.++++++.+.. ..+.|+|+++|=+-.| -..+.+..+.+.+++.++.|+
T Consensus 113 ~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g-----~~~d~y~~li~~~~~~g~~vi 163 (310)
T COG1105 113 EAELEQFLEQLKALLESDDIVVLSGSLPPG-----VPPDAYAELIRILRQQGAKVI 163 (310)
T ss_pred HHHHHHHHHHHHHhcccCCEEEEeCCCCCC-----CCHHHHHHHHHHHHhcCCeEE
Confidence 3456666776666 4467999999988763 356777777777776554443
No 216
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=26.42 E-value=1.3e+02 Score=24.30 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=19.5
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEe
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHM 65 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v 65 (282)
.||+||++.-..+ ..+......+++|++.+
T Consensus 127 ~Pdlviv~~~~~~------------~~ai~Ea~~l~IP~I~i 156 (193)
T cd01425 127 LPDLVIVLDPRKE------------HQAIREASKLGIPVIAI 156 (193)
T ss_pred CCCEEEEeCCccc------------hHHHHHHHHcCCCEEEE
Confidence 7999999964332 25556666677776543
No 217
>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair]
Probab=26.26 E-value=2.4e+02 Score=26.93 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHhhcCCccEEEEcCCCCCCC------CCCcc-cHHHHH-HHHHHHHhcC---CCEEEecCCCCC
Q 023422 7 HSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGF------CPKDQ-SLEAVK-KVVNEFEKFN---GPAYHMIGNHCL 71 (282)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~------~~~~~-~~~~~~-~~~~~l~~~~---~pv~~v~GNHD~ 71 (282)
-+.+.|..+++.++.. +||.+|++|=.+|-. ..... -.+.++ .+...++.+. +.++.||-=.|.
T Consensus 356 l~yepL~dll~~v~~~-~pdvLIL~GPFlD~~h~~i~~~~~t~t~delF~~~i~~ile~~~~~~~~vVlvPs~~Da 430 (600)
T KOG1625|consen 356 LSYEPLCDLLDYVNAE-RPDVLILFGPFLDSKHPLINKGALTITFDELFEKLILGILETLVGSKTQVVLVPSTNDA 430 (600)
T ss_pred cchhHHHHHHHHHhcC-CCCEEEEeccccCccChhhccCCcCccHHHHHHHHHHHHHHhccCCcceEEEecccccc
Confidence 3567889999999988 999999999999832 11111 122232 3444444443 458999987775
No 218
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=26.21 E-value=1.8e+02 Score=27.76 Aligned_cols=55 Identities=15% Similarity=0.010 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC--CCEEEecCC--CCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN--GPAYHMIGN--HCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~--~pv~~v~GN--HD~~ 72 (282)
.+.++++++.+.+. ++|.+|+.|.-- +......+.+.+.+.+ ++|+-||+- .|+.
T Consensus 147 ~e~~~~~~~~l~~~-~Id~LviIGGdg--------S~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~ 205 (539)
T TIGR02477 147 EEQFAKALTTAKKL-KLDGLVIIGGDD--------SNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLK 205 (539)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEeCCch--------HHHHHHHHHHHHHhcCCCceEEEEeeeecCCCC
Confidence 56788999999999 899988777654 3333444445455444 899999984 5664
No 219
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=26.08 E-value=2.5e+02 Score=25.37 Aligned_cols=69 Identities=13% Similarity=-0.006 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccC-CCCe
Q 023422 165 IKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDT-HGIH 238 (282)
Q Consensus 165 ~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~-~~i~ 238 (282)
..-+...+..++.....+|+++|+...-... +......+...+...+ +.+++-+|-|..+-.... ++..
T Consensus 210 ~~~~~~~v~~a~k~adlviv~~HwG~ey~~~----p~~~q~~~a~~lidAG-a~iIvGhhpHvlqpiE~~~~~~~ 279 (372)
T COG2843 210 LERVLAAVLAAKKGADLVIVQPHWGVEYAYE----PAAGQRALARRLIDAG-ADIIVGHHPHVLQPIEIYIQGKP 279 (372)
T ss_pred hhhhHHHHHhhhccCCEEEEeccccccccCC----CcHHHHHHHHHHHhcC-cCeEecCCCCcCcceEEecCCcE
Confidence 4455555666666778999999996432221 1111245556666665 889999999988765554 4553
No 220
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=25.70 E-value=1.8e+02 Score=24.54 Aligned_cols=55 Identities=5% Similarity=0.000 Sum_probs=32.5
Q ss_pred HHHHhhcCCccEEEEcCC-CC-CCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 16 VQRWNNHQKLKFVIHFGD-IV-DGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 16 ~~~~~~~~~~d~vi~~GD-i~-d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
..+++..+..|.+|++|= .. ++..+.......++...+.+++.+.+.+.+.|-+.
T Consensus 36 ~~~~~~~p~~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk~gk~~~ilvSGg~~ 92 (239)
T PRK10834 36 YDELQDLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNA 92 (239)
T ss_pred cccHhhCCCCCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 334555545688888884 32 22222222335566667777777778788888654
No 221
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=25.62 E-value=2.2e+02 Score=25.85 Aligned_cols=24 Identities=13% Similarity=0.490 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHHhcCCCEEEecC
Q 023422 44 SLEAVKKVVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 44 ~~~~~~~~~~~l~~~~~pv~~v~G 67 (282)
.+..++.+++.++....+.++|.|
T Consensus 308 np~s~~~al~~l~~~~~r~i~VlG 331 (417)
T TIGR01143 308 NPDSMRAALDALARFPGKKILVLG 331 (417)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEc
Confidence 455556666666554345666665
No 222
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=25.54 E-value=1.7e+02 Score=24.57 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=25.8
Q ss_pred eEEEEEeeCCCCCCC-CCcccccCHHHHHHHHHccCcEEEEEeCcccCCCc
Q 023422 181 KVVVCCHVPLDPGSA-SPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGH 230 (282)
Q Consensus 181 ~~il~~H~p~~~~~~-~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~ 230 (282)
--+|++|||+.-... ..... ....+ ...+.+++ ..+++-||.....
T Consensus 58 ~dlIitHHP~~f~~~~~~~~~-~~~~~-~~~li~~~--I~vy~~Ht~lD~~ 104 (249)
T TIGR00486 58 ADLIITHHPLIWKPLKRLIRG-IKPGR-LKILLQND--ISLYSAHTNLDAH 104 (249)
T ss_pred CCEEEEcCccccCCcccccCC-CHHHH-HHHHHHCC--CeEEEeecchhcC
Confidence 347899999854321 10001 11234 45566665 4777888887654
No 223
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=25.50 E-value=94 Score=29.58 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEEeeC
Q 023422 159 AVGKEQIKWLDAVLQDATKLNQKVVVCCHVP 189 (282)
Q Consensus 159 ~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p 189 (282)
.+.-+.+.||++.|... ++ .+|+++|--
T Consensus 183 HLD~~~i~WLe~~L~~~--~g-tviiVSHDR 210 (530)
T COG0488 183 HLDLESIEWLEDYLKRY--PG-TVIVVSHDR 210 (530)
T ss_pred ccCHHHHHHHHHHHHhC--CC-cEEEEeCCH
Confidence 56688999999999987 55 899999974
No 224
>COG3562 KpsS Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=24.94 E-value=72 Score=28.33 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=29.1
Q ss_pred cchhhhHHHHHHHHHHHHhhcCCccEEEEcCCCC
Q 023422 2 GWYYRHSLLVLQNAVQRWNNHQKLKFVIHFGDIV 35 (282)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~ 35 (282)
|.-|+.+++.+.+.++....+..+|.+|+.||.=
T Consensus 59 t~~~~~~~D~~~~~~r~f~~~hsi~aivlfgd~R 92 (403)
T COG3562 59 TVVYNDNLDDFPTFLRKFIAQHSIDAIVLFGDTR 92 (403)
T ss_pred ccccccchhHHHHHHHHHHHhccCCceEEeccch
Confidence 4567889999999999888766899999999984
No 225
>PRK03202 6-phosphofructokinase; Provisional
Probab=24.87 E-value=1.6e+02 Score=26.00 Aligned_cols=50 Identities=8% Similarity=0.021 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
..+.++++++.+++. ++|.+|+.|..-. .. ....|.+.++|++.+|+-=|
T Consensus 78 ~~~~~~~~~~~l~~~-~Id~Li~IGGd~s--------~~----~a~~L~e~~i~vigiPkTID 127 (320)
T PRK03202 78 DEEGRAKAIENLKKL-GIDALVVIGGDGS--------YM----GAKRLTEHGIPVIGLPGTID 127 (320)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEeCChHH--------HH----HHHHHHhcCCcEEEeccccc
Confidence 356788999999999 9999888876532 11 12223345789999998544
No 226
>CHL00067 rps2 ribosomal protein S2
Probab=24.87 E-value=1.9e+02 Score=24.15 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=18.3
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEE
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYH 64 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~ 64 (282)
.||+||+++=.-+ ..+......+++|++.
T Consensus 161 ~P~~iiv~d~~~~------------~~ai~Ea~~l~IPvIa 189 (230)
T CHL00067 161 LPDIVIIIDQQEE------------YTALRECRKLGIPTIS 189 (230)
T ss_pred CCCEEEEeCCccc------------HHHHHHHHHcCCCEEE
Confidence 6899988765443 1455566666677643
No 227
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=24.86 E-value=2e+02 Score=27.88 Aligned_cols=55 Identities=13% Similarity=0.078 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhc--CCCEEEecCC--CCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKF--NGPAYHMIGN--HCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~--~~pv~~v~GN--HD~~ 72 (282)
.+.++++++.+.+. ++|.+|+.|.-- +......+.+.+.+. +++|+-||.- .|+.
T Consensus 159 ~e~~~~i~e~l~~l-~Id~LvvIGGdd--------S~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~ 217 (610)
T PLN03028 159 TEQVNAALAACEAL-KLDGLVIIGGVT--------SNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLK 217 (610)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEeCCch--------HHHHHHHHHHHHHHcCCCceEEEeceeeeCCCC
Confidence 46788999999999 899987777654 233344445545444 5899999874 4553
No 228
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=24.51 E-value=99 Score=26.94 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=29.2
Q ss_pred cEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEE--ecCCCCCC
Q 023422 26 KFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYH--MIGNHCLY 72 (282)
Q Consensus 26 d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~--v~GNHD~~ 72 (282)
.+++.+|+-..+ -...-+.+.+.|++.+.|+++ ++|+||..
T Consensus 240 ~~~l~~g~~~~~------~~~pNr~L~~~L~~~g~~~~yre~~GgHdw~ 282 (299)
T COG2382 240 RIVLTTGGEEGD------FLRPNRALAAQLEKKGIPYYYREYPGGHDWA 282 (299)
T ss_pred eEEeecCCcccc------ccchhHHHHHHHHhcCCcceeeecCCCCchh
Confidence 477777777753 233345677788887777776 99999984
No 229
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=24.30 E-value=2.2e+02 Score=27.30 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC--CCEEEecC--CCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN--GPAYHMIG--NHCLY 72 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~--~pv~~v~G--NHD~~ 72 (282)
..+.++++++.+.+. ++|.+|+.|.-- +......+.+.+.+.+ ++|+-||. ..|+.
T Consensus 151 ~~e~~~~i~~~l~~~-~Id~LviIGGdd--------S~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~ 210 (550)
T cd00765 151 TEDQFKQAEETAKKL-DLDALVVIGGDD--------SNTNAALLAENFRSKGLKTRVIGVPKTIDGDLK 210 (550)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEeCCch--------HHHHHHHHHHHHHhcCCCceEEEEeeeecCCCC
Confidence 456788999999999 899988777654 3333444555555444 79999998 45554
No 230
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=24.17 E-value=2.6e+02 Score=23.21 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=28.5
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC--CCEEEecCCCCC
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN--GPAYHMIGNHCL 71 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~--~pv~~v~GNHD~ 71 (282)
..|++++.|=.- -+ +..+.+.+.+++.. .|++..|||++.
T Consensus 25 gtdai~vGGS~~-------v~-~~~~~~~~~ik~~~~~~Pvilfp~~~~~ 66 (219)
T cd02812 25 GTDAIMVGGSDG-------VS-STLDNVVRLIKRIRRPVPVILFPSNPEA 66 (219)
T ss_pred CCCEEEECCccc-------hh-hhHHHHHHHHHHhcCCCCEEEeCCCccc
Confidence 789999998662 12 45555555555543 799999999994
No 231
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=24.12 E-value=2.8e+02 Score=24.99 Aligned_cols=54 Identities=7% Similarity=-0.034 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCC
Q 023422 10 LVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNH 69 (282)
Q Consensus 10 ~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNH 69 (282)
.+++.+.+.+.+. ++|.||...=-+. +...-....+.+.+++.++|+..+-|..
T Consensus 300 ~R~~~i~~lv~~~-~~DGVI~~~~kfC-----~~~~~e~~~lk~~l~e~GIP~L~iE~D~ 353 (377)
T TIGR03190 300 TRYDHVLGLAKEY-NVQGAIFLQQKFC-----DPHEGDYPDLKRHLEANGIPTLFLEFDI 353 (377)
T ss_pred HHHHHHHHHHHHh-CCCEEEEecccCC-----CcchhhhHHHHHHHHHCCCCEEEEecCC
Confidence 3556666666777 8999999998887 3444455566777888899999999943
No 232
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=24.08 E-value=2.1e+02 Score=21.03 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhcCCccEE-EEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCC
Q 023422 10 LVLQNAVQRWNNHQKLKFV-IHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGN 68 (282)
Q Consensus 10 ~~l~~~~~~~~~~~~~d~v-i~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GN 68 (282)
+.+.++++.+.+. +.-.+ |-.|+..+ +.-+.+.+..++.+.|++.+|-+
T Consensus 59 ~~~~~~i~~L~~~-~~agL~i~~~~~~~---------~iP~~~i~~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 59 EELREFIRELAEK-GAAGLGIKTGRYLD---------EIPEEIIELADELGLPLIEIPWE 108 (123)
T ss_pred HHHHHHHHHHHHC-CCeEEEEeccCccc---------cCCHHHHHHHHHcCCCEEEeCCC
Confidence 3466666666665 44333 33555553 11134555555566677777653
No 233
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=24.03 E-value=3.2e+02 Score=20.66 Aligned_cols=51 Identities=10% Similarity=-0.013 Sum_probs=36.1
Q ss_pred HHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC--CCEEEecCCCC
Q 023422 12 LQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN--GPAYHMIGNHC 70 (282)
Q Consensus 12 l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~--~pv~~v~GNHD 70 (282)
.+++++.+.+. ++|+|.++.=++ .+...+..+.+.+++.+ .+.+++-|+-=
T Consensus 41 ~e~~v~aa~~~-~adiVglS~l~~-------~~~~~~~~~~~~l~~~gl~~~~vivGG~~v 93 (134)
T TIGR01501 41 QEEFIKAAIET-KADAILVSSLYG-------HGEIDCKGLRQKCDEAGLEGILLYVGGNLV 93 (134)
T ss_pred HHHHHHHHHHc-CCCEEEEecccc-------cCHHHHHHHHHHHHHCCCCCCEEEecCCcC
Confidence 35677777787 899988877665 35566777888888765 35677888643
No 234
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=23.91 E-value=98 Score=27.22 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d 36 (282)
.++.+.+.++++.+.+. ..|+||.+|-..-
T Consensus 202 ~Dd~~~I~~ai~~~~~~-g~DlIItTGGtsv 231 (312)
T cd03522 202 PHDEAAIAAAIAEALEA-GAELLILTGGASV 231 (312)
T ss_pred CCCHHHHHHHHHHHhcC-CCCEEEEeCCccc
Confidence 56677888888877665 5899999999884
No 235
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=23.46 E-value=2.2e+02 Score=24.85 Aligned_cols=51 Identities=16% Similarity=0.023 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
.+.++++++.+++. ++|.+|+.|--- +.. .+....+..++||+-+|.-=|-
T Consensus 77 ~~~~~~~~~~l~~~-~Id~Li~IGGdg--------s~~---~a~~L~e~~~i~vigiPkTIDN 127 (301)
T TIGR02482 77 EEGRQKAVENLKKL-GIEGLVVIGGDG--------SYT---GAQKLYEEGGIPVIGLPGTIDN 127 (301)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEeCCch--------HHH---HHHHHHHhhCCCEEeecccccC
Confidence 46788899999999 899977776543 112 2222222257899999976553
No 236
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=23.43 E-value=1.4e+02 Score=26.20 Aligned_cols=42 Identities=14% Similarity=0.020 Sum_probs=28.5
Q ss_pred HHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEec
Q 023422 16 VQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMI 66 (282)
Q Consensus 16 ~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~ 66 (282)
++.+... +||+||..+.... ...-....+.|+++++|++.+.
T Consensus 84 ~E~l~~l-~PDLIi~~~~~~~--------~~~~~~~~~~l~~~gipvv~~~ 125 (342)
T cd01139 84 VEKVLTL-KPDLVILNIWAKT--------TAEESGILEKLEQAGIPVVFVD 125 (342)
T ss_pred HHHHhhc-CCCEEEEeccccc--------cchhhHHHHHHHHcCCcEEEEe
Confidence 5566666 8999988765432 0122356677888889999886
No 237
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=23.37 E-value=1.4e+02 Score=29.85 Aligned_cols=56 Identities=13% Similarity=0.152 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 10 LVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 10 ~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+.+.++.+.+.+. ++|.+|+.|-.-. ......+....+.+..+++|++.||+-=|-
T Consensus 465 ~~~~~i~~~l~~~-~Id~LivIGGdgs-----~~~a~~L~~~~~~y~~~~i~vVgIPkTIDN 520 (762)
T cd00764 465 KDLETIAYNFQKY-GIDGLIIVGGFEA-----YKGLLQLREAREQYEEFCIPMVLIPATVSN 520 (762)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECChhH-----HHHHHHHHHHHhhCCCCCccEEEecccccC
Confidence 5788888999998 8998777665431 122222333333334467999999996653
No 238
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=23.36 E-value=2.3e+02 Score=24.55 Aligned_cols=56 Identities=29% Similarity=0.347 Sum_probs=33.5
Q ss_pred HHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCccc
Q 023422 168 LDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDH 226 (282)
Q Consensus 168 l~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H 226 (282)
+....+.+.+.+-++++ |.+..+..........+...+.+++.+++++++|+ ||.-
T Consensus 146 ~~pi~~~a~~~gvpv~i--htG~~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl-~H~G 201 (293)
T COG2159 146 LYPIYEAAEELGVPVVI--HTGAGPGGAGLEKGHSDPLYLDDVARKFPELKIVL-GHMG 201 (293)
T ss_pred HHHHHHHHHHcCCCEEE--EeCCCCCCcccccCCCCchHHHHHHHHCCCCcEEE-EecC
Confidence 44455555545666665 87765544211111133457888999998887776 8875
No 239
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=23.21 E-value=3.7e+02 Score=21.07 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCC--CCC-CCCC------Cc------ccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGD--IVD-GFCP------KD------QSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GD--i~d-~~~~------~~------~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
....+.|.++++.+.....+..||+.|+ .+. |... .. ...+.+..+...+...+.|++.+.--|=
T Consensus 25 ~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a 104 (195)
T cd06558 25 LEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAA 104 (195)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence 4556677777777776557888999886 111 1110 00 1122333444555566789988665444
Q ss_pred C
Q 023422 71 L 71 (282)
Q Consensus 71 ~ 71 (282)
.
T Consensus 105 ~ 105 (195)
T cd06558 105 L 105 (195)
T ss_pred e
Confidence 3
No 240
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=23.18 E-value=2.3e+02 Score=27.25 Aligned_cols=56 Identities=13% Similarity=0.002 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh--cCCCEEEecCC--CCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK--FNGPAYHMIGN--HCLY 72 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~--~~~pv~~v~GN--HD~~ 72 (282)
..+.++++++.+.+. ++|.+|+.|.-- +......+.+.+.+ .+++|+.||+- .|+.
T Consensus 149 ~~e~~~~i~~~l~~~-~Id~LviIGGd~--------S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~ 208 (555)
T PRK07085 149 TEEQKEACLETVKKL-KLDGLVIIGGDD--------SNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLK 208 (555)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEeCCch--------HHHHHHHHHHHHHHhCCCccEEEEeeeecCCCC
Confidence 346788999999999 899987777654 23333444444443 36899999984 4554
No 241
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=22.75 E-value=2.2e+02 Score=18.30 Aligned_cols=45 Identities=11% Similarity=-0.069 Sum_probs=23.3
Q ss_pred HHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCC
Q 023422 15 AVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNH 69 (282)
Q Consensus 15 ~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNH 69 (282)
+.+.+.+. ++++..+ |+.. .....+.+.+.......|++++-|+|
T Consensus 17 a~~~L~~~-gi~~~~~--di~~-------~~~~~~el~~~~g~~~vP~v~i~~~~ 61 (73)
T cd03027 17 VRLFLREK-GLPYVEI--NIDI-------FPERKAELEERTGSSVVPQIFFNEKL 61 (73)
T ss_pred HHHHHHHC-CCceEEE--ECCC-------CHHHHHHHHHHhCCCCcCEEEECCEE
Confidence 33334444 5666555 5553 22333444444444446888887753
No 242
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.73 E-value=3e+02 Score=21.57 Aligned_cols=50 Identities=14% Similarity=-0.060 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCE
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPA 62 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv 62 (282)
..+.+.++++.+.+.+. -|.+-|..=.-- .......+.+.+.+++.+..+
T Consensus 55 G~~~~~~~~~~~~l~~~-yP~l~ivg~~~g------~f~~~~~~~i~~~I~~~~pdi 104 (172)
T PF03808_consen 55 GGSEEVLEKAAANLRRR-YPGLRIVGYHHG------YFDEEEEEAIINRINASGPDI 104 (172)
T ss_pred eCCHHHHHHHHHHHHHH-CCCeEEEEecCC------CCChhhHHHHHHHHHHcCCCE
Confidence 45567777888888776 455444321111 113455667777777765443
No 243
>PTZ00287 6-phosphofructokinase; Provisional
Probab=22.64 E-value=2.2e+02 Score=30.47 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCC--EEEecC--CCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGP--AYHMIG--NHCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~p--v~~v~G--NHD~~ 72 (282)
.+.++++++.+.+. ++|.+|+.|.-. +......+.+.+.+.++| |+-||+ ..|+.
T Consensus 914 ~e~~~ka~~~lk~l-~ID~LVvIGGDg--------S~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~ 972 (1419)
T PTZ00287 914 KENRNKVCETVTNL-QLNGLVMPGSNV--------TITEAALLAEYFLEKKIPTSVVGIPLTGSNNLI 972 (1419)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEECCch--------HHHHHHHHHHHHHhcCCCccEEEeCceeeCCCC
Confidence 57889999999998 999988877654 334444555555555666 999998 55664
No 244
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=22.47 E-value=1.7e+02 Score=22.90 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=24.1
Q ss_pred HHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEec
Q 023422 16 VQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMI 66 (282)
Q Consensus 16 ~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~ 66 (282)
++.+.+. +||+||..+... . ...+.+++.++|++.+.
T Consensus 53 ~E~l~~l-~PDlii~~~~~~---------~----~~~~~l~~~gi~v~~~~ 89 (195)
T cd01143 53 VEKIVAL-KPDLVIVSSSSL---------A----ELLEKLKDAGIPVVVLP 89 (195)
T ss_pred HHHHhcc-CCCEEEEcCCcC---------H----HHHHHHHHcCCcEEEeC
Confidence 4566666 899887754321 1 24567777888887775
No 245
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=22.11 E-value=1.7e+02 Score=23.94 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=8.6
Q ss_pred HHHHHHHhcCCCEE
Q 023422 50 KVVNEFEKFNGPAY 63 (282)
Q Consensus 50 ~~~~~l~~~~~pv~ 63 (282)
.+.....++++|++
T Consensus 128 ~AI~EA~kl~IP~I 141 (204)
T PRK04020 128 QAVKEAIEVGIPVV 141 (204)
T ss_pred HHHHHHHHhCCCEE
Confidence 45555666777764
No 246
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=21.76 E-value=1.1e+02 Score=25.67 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=22.8
Q ss_pred eEEEEEeeCCCCCCCCCcccccC-HHHHHHHHHccCcEEEEEeCcccCCC
Q 023422 181 KVVVCCHVPLDPGSASPEALLWN-CNEVMDVIHRYNCVKVCLAGHDHQGG 229 (282)
Q Consensus 181 ~~il~~H~p~~~~~~~~~~~~~~-~~~~~~~l~~~~~v~~~~~GH~H~~~ 229 (282)
-.+|++|||+.-... +.....+ ..+....+.+++ ..+++-||....
T Consensus 54 ~dlIItHHP~~f~~~-~~~~~~~~~~~~~~~li~~~--I~vy~~Ht~lD~ 100 (241)
T PF01784_consen 54 ADLIITHHPLFFKPL-KSLTGDDYKGKIIEKLIKNG--ISVYSAHTNLDA 100 (241)
T ss_dssp -SEEEESS-SSSSTS-SHCHCHSHHHHHHHHHHHTT---EEEEESHHHHH
T ss_pred CCEEEEcCchhhcCC-ccccccchhhHHHHHHHHCC--CEEEEecccccc
Confidence 447899999754331 1100011 234444455564 477778888653
No 247
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=21.75 E-value=4.3e+02 Score=21.94 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=18.8
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEe
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHM 65 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v 65 (282)
.||+||+++=.-+ ..+......+++|++.+
T Consensus 155 ~Pd~vii~d~~~~------------~~ai~Ea~~l~IP~I~i 184 (225)
T TIGR01011 155 LPDLLFVIDPVKE------------KIAVAEARKLGIPVVAI 184 (225)
T ss_pred CCCEEEEeCCCcc------------HHHHHHHHHcCCCEEEE
Confidence 6899998764332 24555666677776443
No 248
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=21.70 E-value=2.5e+02 Score=24.87 Aligned_cols=51 Identities=14% Similarity=-0.014 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCC--CCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGN--HCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GN--HD~~ 72 (282)
.+.++++++.+++. ++|.+|+.|-.-. .... ..|.+.++||+.+|+- .|+.
T Consensus 80 ~~~~~~~~~~l~~~-~Id~LivIGGdgS--------~~~a----~~L~~~gi~vigiPkTIDNDl~ 132 (324)
T TIGR02483 80 EDGDDKIVANLKEL-GLDALIAIGGDGT--------LGIA----RRLADKGLPVVGVPKTIDNDLE 132 (324)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEECCchH--------HHHH----HHHHhcCCCEEeeccccCCCCc
Confidence 36788999999999 8999887776542 1222 2233356899999985 4554
No 249
>KOG3167 consensus Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation [RNA processing and modification]
Probab=21.63 E-value=1.6e+02 Score=22.38 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=24.9
Q ss_pred HHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 16 VQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 16 ~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
...+.+- .--++|++||++- -+.+..+=-.....++|+.++|---|
T Consensus 68 qK~vrkG-eKGl~VlAgd~sP--------iDvi~HlP~lCEd~~vPYvy~psk~d 113 (153)
T KOG3167|consen 68 QKRVRKG-EKGLCVLAGDTSP--------IDVITHLPALCEDRGVPYVYTPSKED 113 (153)
T ss_pred HHHHhcC-CcceEEEecCCcc--------HHHHhccchhhhccCCCccccccHHH
Confidence 3344443 5678999999983 12222222334445677766654333
No 250
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=21.52 E-value=2.1e+02 Score=24.37 Aligned_cols=29 Identities=14% Similarity=0.045 Sum_probs=18.6
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEE
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYH 64 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~ 64 (282)
.||+||++.=.-+ ..+......+++|++.
T Consensus 157 ~Pd~iii~d~~~~------------~~ai~Ea~kl~IPiIa 185 (258)
T PRK05299 157 LPDALFVVDPNKE------------HIAVKEARKLGIPVVA 185 (258)
T ss_pred CCCEEEEeCCCcc------------HHHHHHHHHhCCCEEE
Confidence 6899998764332 2455666667777644
No 251
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=21.41 E-value=3.2e+02 Score=24.84 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=13.3
Q ss_pred hhcCCccEEEEcCCCCC
Q 023422 20 NNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 20 ~~~~~~d~vi~~GDi~d 36 (282)
.+. +||+|++-||...
T Consensus 89 ~~~-kPD~VlVhGDT~t 104 (383)
T COG0381 89 EEE-KPDLVLVHGDTNT 104 (383)
T ss_pred Hhh-CCCEEEEeCCcch
Confidence 345 9999999999983
No 252
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=21.04 E-value=3.7e+02 Score=24.78 Aligned_cols=53 Identities=9% Similarity=-0.065 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCC
Q 023422 11 VLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNH 69 (282)
Q Consensus 11 ~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNH 69 (282)
+++.+.+-+.+. ++|.||...--..+ ..+.+.+ .+.+.+++.++|+..+-|+.
T Consensus 349 R~~~l~~li~e~-~vDGVI~~~~~~C~----~~s~e~~-~ik~~l~~~GIP~L~ietD~ 401 (430)
T TIGR03191 349 KSEMMLNIARDW-NVDGCMLHLNRGCE----GLSIGIM-ENRLAIAKAGIPIMTFEGNM 401 (430)
T ss_pred HHHHHHHHHHHH-CCCEEEEcCCCCCc----cchHhHH-HHHHHHHHcCCCEEEEECCC
Confidence 556666666777 89999999888873 2233333 46677778899999999954
No 253
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=20.82 E-value=2.8e+02 Score=21.18 Aligned_cols=9 Identities=11% Similarity=0.331 Sum_probs=5.4
Q ss_pred CccEEEEcC
Q 023422 24 KLKFVIHFG 32 (282)
Q Consensus 24 ~~d~vi~~G 32 (282)
+||.|++..
T Consensus 50 ~p~~vvi~~ 58 (171)
T cd04502 50 QPRRVVLYA 58 (171)
T ss_pred CCCEEEEEE
Confidence 566666644
No 254
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=20.57 E-value=2.3e+02 Score=22.36 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEEeeC
Q 023422 159 AVGKEQIKWLDAVLQDATKLNQKVVVCCHVP 189 (282)
Q Consensus 159 ~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p 189 (282)
.+.....+++.+.|.+....+..+|+++|.+
T Consensus 157 ~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 157 GLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 4556666777777776644455677777764
No 255
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.06 E-value=3.6e+02 Score=23.76 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCC
Q 023422 158 GAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLD 191 (282)
Q Consensus 158 ~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~ 191 (282)
-.+++++++-+.+.+...-.+..-+++.+-.|+.
T Consensus 109 p~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g 142 (310)
T COG1105 109 PEISEAELEQFLEQLKALLESDDIVVLSGSLPPG 142 (310)
T ss_pred CCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCC
Confidence 3688999999999888854455666666666654
No 256
>PTZ00333 triosephosphate isomerase; Provisional
Probab=20.06 E-value=92 Score=26.50 Aligned_cols=34 Identities=15% Similarity=0.345 Sum_probs=28.1
Q ss_pred cchhhhHHHHHHHHHHHHhhcCCccEEEEcCCCCC
Q 023422 2 GWYYRHSLLVLQNAVQRWNNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d 36 (282)
+++|.|+.+.+.+.++...+. +..-|++.|....
T Consensus 101 R~~f~Etd~~I~~Kv~~al~~-gl~pIlCvGE~~~ 134 (255)
T PTZ00333 101 RQYFGETNEIVAQKVKNALEN-GLKVILCIGETLE 134 (255)
T ss_pred cCcCCCCcHHHHHHHHHHHHC-CCEEEEEcCCCHH
Confidence 567788888888888888888 8888999998763
Done!