Query 023422
Match_columns 282
No_of_seqs 107 out of 1402
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 06:31:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nxf_A Putative dimetal phosph 100.0 1.7E-34 5.9E-39 251.6 23.8 278 3-281 31-322 (322)
2 3d03_A Phosphohydrolase; glyce 99.9 7.7E-25 2.6E-29 186.6 23.3 212 7-269 23-251 (274)
3 3ib7_A ICC protein; metallopho 99.9 8.3E-24 2.8E-28 185.0 20.9 210 7-272 48-278 (330)
4 2xmo_A LMO2642 protein; phosph 99.9 3.4E-22 1.2E-26 182.0 23.9 221 7-270 76-330 (443)
5 1ute_A Protein (II purple acid 99.9 1.2E-21 4.1E-26 169.6 10.6 230 9-272 28-290 (313)
6 3tgh_A Glideosome-associated p 99.8 3.7E-20 1.3E-24 162.2 16.4 105 160-271 175-292 (342)
7 1xzw_A Purple acid phosphatase 99.8 5.7E-18 2E-22 153.4 18.3 209 14-270 143-404 (426)
8 1uf3_A Hypothetical protein TT 99.7 5.9E-17 2E-21 133.8 15.2 200 10-267 19-224 (228)
9 2yvt_A Hypothetical protein AQ 99.7 5.1E-17 1.7E-21 137.2 14.6 205 11-269 20-258 (260)
10 2qfp_A Purple acid phosphatase 99.7 2.3E-17 7.8E-22 149.3 11.6 168 15-230 137-321 (424)
11 2q8u_A Exonuclease, putative; 99.7 4.2E-16 1.4E-20 136.8 13.3 221 8-274 46-281 (336)
12 3av0_A DNA double-strand break 99.6 2.5E-14 8.4E-19 127.8 16.5 64 9-73 46-109 (386)
13 3tho_B Exonuclease, putative; 99.6 1.1E-14 3.7E-19 129.7 13.8 215 8-271 28-260 (379)
14 1nnw_A Hypothetical protein; s 99.5 1E-14 3.5E-19 122.6 5.4 115 158-273 108-225 (252)
15 3qfm_A SAPH, putative uncharac 99.5 1.3E-13 4.4E-18 117.2 10.2 196 9-272 24-231 (270)
16 2a22_A Vacuolar protein sortin 99.5 8.9E-13 3E-17 108.3 14.8 85 180-273 113-202 (215)
17 1s3l_A Hypothetical protein MJ 99.5 1.7E-13 5.7E-18 110.4 10.2 152 9-269 38-189 (190)
18 3rl5_A Metallophosphoesterase 99.5 3.9E-13 1.3E-17 114.7 12.9 173 23-248 78-278 (296)
19 1z2w_A Vacuolar protein sortin 99.5 7.4E-13 2.5E-17 106.8 14.0 83 181-272 90-177 (192)
20 2yeq_A Apased, PHOD, alkaline 99.5 3.4E-12 1.2E-16 118.0 19.4 188 15-231 134-387 (527)
21 3t1i_A Double-strand break rep 99.5 2.2E-12 7.6E-17 115.6 16.5 93 178-279 228-328 (431)
22 4fbw_A DNA repair protein RAD3 99.4 5.8E-13 2E-17 118.9 11.5 92 178-278 209-308 (417)
23 4fbk_A DNA repair and telomere 99.4 6.1E-12 2.1E-16 113.2 15.4 91 179-278 273-371 (472)
24 3rqz_A Metallophosphoesterase; 99.4 5.1E-13 1.8E-17 111.9 7.5 109 158-273 91-221 (246)
25 1ii7_A MRE11 nuclease; RAD50, 99.4 1.4E-11 4.6E-16 107.9 16.2 63 9-72 26-88 (333)
26 3ck2_A Conserved uncharacteriz 99.3 3.1E-11 1.1E-15 95.8 14.6 82 181-271 78-161 (176)
27 1xm7_A Hypothetical protein AQ 99.3 1.1E-11 3.6E-16 100.2 9.8 64 180-246 106-173 (195)
28 2kkn_A Uncharacterized protein 99.3 1.8E-11 6.1E-16 97.4 9.9 48 216-269 128-175 (178)
29 1su1_A Hypothetical protein YF 99.3 1.1E-10 3.8E-15 95.2 14.1 62 9-71 38-100 (208)
30 1g5b_A Serine/threonine protei 98.8 2.8E-10 9.5E-15 93.6 -3.1 54 9-71 25-78 (221)
31 3ive_A Nucleotidase; structura 98.6 1.4E-06 4.8E-11 80.3 17.1 70 9-83 37-107 (509)
32 3qfk_A Uncharacterized protein 98.6 5.5E-07 1.9E-11 83.3 14.2 67 9-82 48-122 (527)
33 2z1a_A 5'-nucleotidase; metal- 98.6 6.7E-07 2.3E-11 83.2 14.2 71 8-83 58-129 (552)
34 1hp1_A 5'-nucleotidase; metall 98.6 2.7E-06 9.1E-11 78.6 17.3 61 9-72 31-95 (516)
35 2wdc_A SOXB, sulfur oxidation 98.5 4.1E-06 1.4E-10 78.0 16.7 57 9-72 104-167 (562)
36 4h2g_A 5'-nucleotidase; dimer, 98.3 1E-05 3.5E-10 75.2 13.3 61 8-72 57-118 (546)
37 3ztv_A NAD nucleotidase, NADN; 98.3 1.3E-05 4.5E-10 74.9 14.1 70 9-83 46-116 (579)
38 3jyf_A 2',3'-cyclic nucleotide 98.0 3.4E-05 1.2E-09 67.2 10.9 67 8-83 36-115 (339)
39 3gve_A YFKN protein; alpha-bet 98.0 0.00013 4.5E-09 63.5 13.2 72 8-83 39-122 (341)
40 1t71_A Phosphatase, conserved 97.9 0.00037 1.3E-08 58.8 14.6 58 9-73 19-76 (281)
41 1t70_A Phosphatase; crystal, X 97.8 0.00076 2.6E-08 56.0 14.5 56 9-73 15-70 (255)
42 2z06_A Putative uncharacterize 97.8 0.0021 7.1E-08 53.2 17.0 56 9-73 15-70 (252)
43 4h1s_A 5'-nucleotidase; hydrol 97.7 0.00027 9.1E-09 65.3 12.4 62 8-73 35-97 (530)
44 3c9f_A 5'-nucleotidase; 2',3'- 97.4 0.00054 1.9E-08 63.5 9.5 63 9-73 44-108 (557)
45 2qjc_A Diadenosine tetraphosph 97.3 0.00021 7.1E-09 59.9 4.5 54 9-71 31-84 (262)
46 2dfj_A Diadenosinetetraphospha 97.2 0.00011 3.7E-09 62.3 2.2 56 9-71 13-68 (280)
47 2ie4_C PP2A-alpha;, serine/thr 97.2 0.00067 2.3E-08 58.1 6.8 60 9-72 62-121 (309)
48 1fjm_A Protein serine/threonin 97.1 0.00089 3E-08 57.8 6.8 59 9-71 69-127 (330)
49 3e7a_A PP-1A, serine/threonine 96.9 0.0017 5.7E-08 55.3 6.8 59 9-71 68-126 (299)
50 1wao_1 Serine/threonine protei 96.9 0.0017 6E-08 59.0 6.8 60 9-71 225-284 (477)
51 3h63_A Serine/threonine-protei 96.9 0.0021 7.1E-08 55.0 6.8 60 9-71 72-131 (315)
52 3icf_A PPT, serine/threonine-p 96.8 0.0029 1E-07 54.6 7.1 60 9-71 76-135 (335)
53 3ll8_A Serine/threonine-protei 96.7 0.0028 9.6E-08 55.0 6.8 59 9-71 82-140 (357)
54 2z72_A Protein-tyrosine-phosph 96.6 0.0017 6E-08 56.4 4.8 60 9-71 83-152 (342)
55 1aui_A Calcineurin, serine/thr 96.5 0.0058 2E-07 55.5 7.1 74 200-274 258-338 (521)
56 3e0j_A DNA polymerase subunit 94.4 0.11 3.6E-06 46.9 7.5 53 216-272 405-464 (476)
57 3flo_A DNA polymerase alpha su 91.0 0.29 9.8E-06 43.9 5.4 64 9-72 165-247 (460)
58 3v7e_A Ribosome-associated pro 73.4 8.7 0.0003 25.3 5.5 49 13-71 17-65 (82)
59 3jyw_G 60S ribosomal protein L 68.2 8.5 0.00029 27.2 4.8 50 13-71 31-80 (113)
60 3w01_A Heptaprenylglyceryl pho 67.8 17 0.00059 29.3 7.1 47 17-71 30-76 (235)
61 3vzx_A Heptaprenylglyceryl pho 66.6 11 0.00038 30.3 5.7 49 15-71 23-71 (228)
62 2qjc_A Diadenosine tetraphosph 63.9 5.7 0.00019 32.6 3.7 43 217-265 197-241 (262)
63 2lbw_A H/ACA ribonucleoprotein 62.2 15 0.00052 26.2 5.3 49 14-71 27-75 (121)
64 3j21_Z 50S ribosomal protein L 61.6 35 0.0012 23.2 7.2 48 13-70 21-68 (99)
65 1w41_A 50S ribosomal protein L 60.5 34 0.0012 23.3 6.7 45 13-67 22-66 (101)
66 2z72_A Protein-tyrosine-phosph 59.7 19 0.00066 30.7 6.4 60 204-268 267-326 (342)
67 2xzm_U Ribosomal protein L7AE 59.5 25 0.00086 25.3 6.1 50 13-71 30-79 (126)
68 3iz5_f 60S ribosomal protein L 58.6 35 0.0012 23.9 6.6 56 13-85 32-87 (112)
69 3cpq_A 50S ribosomal protein L 55.0 35 0.0012 23.7 6.1 55 14-85 28-82 (110)
70 3pzy_A MOG; ssgcid, seattle st 53.3 26 0.00089 26.4 5.5 29 6-36 50-78 (164)
71 3v7q_A Probable ribosomal prot 53.0 44 0.0015 22.8 6.2 44 13-66 25-68 (101)
72 4a17_F RPL7A, 60S ribosomal pr 52.2 38 0.0013 27.5 6.5 50 13-71 130-179 (255)
73 3on1_A BH2414 protein; structu 51.6 30 0.001 23.6 5.2 44 13-66 24-67 (101)
74 2ale_A SNU13, NHP2/L7AE family 49.9 16 0.00054 26.7 3.6 48 14-70 39-86 (134)
75 2vqe_B 30S ribosomal protein S 48.5 24 0.00083 28.8 4.9 36 24-71 158-207 (256)
76 2aif_A Ribosomal protein L7A; 46.9 53 0.0018 23.8 6.1 55 14-85 48-102 (135)
77 1y5e_A Molybdenum cofactor bio 45.7 65 0.0022 24.1 6.8 31 6-36 54-84 (169)
78 2g2c_A Putative molybdenum cof 44.9 47 0.0016 24.9 5.8 30 6-36 52-81 (167)
79 3vk5_A MOEO5; TIM barrel, tran 44.8 55 0.0019 27.2 6.5 54 9-71 52-112 (286)
80 3iz5_H 60S ribosomal protein L 42.3 57 0.002 26.5 6.0 49 13-70 133-181 (258)
81 3men_A Acetylpolyamine aminohy 40.9 1.1E+02 0.0039 26.2 8.1 58 9-67 277-338 (362)
82 2lpm_A Two-component response 38.5 59 0.002 22.9 5.2 49 13-71 43-91 (123)
83 2pjk_A 178AA long hypothetical 38.0 64 0.0022 24.5 5.7 31 6-36 63-93 (178)
84 4hwg_A UDP-N-acetylglucosamine 37.8 38 0.0013 29.3 4.8 45 11-68 82-126 (385)
85 2jnb_A NHP2-like protein 1; sp 37.7 17 0.00058 26.9 2.1 48 14-70 57-104 (144)
86 2pbq_A Molybdenum cofactor bio 36.1 79 0.0027 23.9 5.9 31 6-36 50-80 (178)
87 1uuy_A CNX1, molybdopterin bio 35.6 1.1E+02 0.0038 22.7 6.6 31 6-36 53-83 (167)
88 3iwt_A 178AA long hypothetical 35.6 1E+02 0.0034 23.1 6.5 31 6-36 63-93 (178)
89 1xbi_A 50S ribosomal protein L 34.3 34 0.0012 24.2 3.3 49 13-70 35-83 (120)
90 1jlj_A Gephyrin; globular alph 33.6 42 0.0014 25.9 3.9 31 6-36 60-90 (189)
91 3izc_H 60S ribosomal protein R 33.3 40 0.0014 27.4 3.8 50 13-71 137-186 (256)
92 3nhm_A Response regulator; pro 32.8 1.1E+02 0.0039 20.6 6.2 53 13-71 37-89 (133)
93 1vq8_F 50S ribosomal protein L 32.5 44 0.0015 23.6 3.6 48 14-70 36-83 (120)
94 2fc3_A 50S ribosomal protein L 32.0 44 0.0015 23.7 3.6 48 14-70 35-82 (124)
95 3u5e_c L32, RP73, YL38, 60S ri 31.8 1.1E+02 0.0037 20.9 5.5 56 13-85 28-83 (105)
96 1rlg_A 50S ribosomal protein L 30.4 41 0.0014 23.7 3.1 48 14-70 34-81 (119)
97 3o85_A Ribosomal protein L7AE; 30.1 53 0.0018 23.3 3.7 48 14-70 38-85 (122)
98 3md9_A Hemin-binding periplasm 29.1 80 0.0027 25.0 5.1 39 16-67 52-90 (255)
99 3psh_A Protein HI_1472; substr 29.0 72 0.0025 26.4 5.0 40 16-69 77-116 (326)
100 1mkz_A Molybdenum cofactor bio 28.9 74 0.0025 23.9 4.6 31 6-36 51-81 (172)
101 3rfq_A Pterin-4-alpha-carbinol 28.7 62 0.0021 24.9 4.1 30 6-36 72-101 (185)
102 1di6_A MOGA, molybdenum cofact 28.5 1.4E+02 0.0049 22.9 6.3 31 6-36 48-78 (195)
103 2j48_A Two-component sensor ki 28.2 1.2E+02 0.0041 19.6 5.3 49 13-71 35-87 (119)
104 3q9b_A Acetylpolyamine amidohy 28.0 1.2E+02 0.0042 25.7 6.2 61 9-70 259-324 (341)
105 3i42_A Response regulator rece 26.5 1.2E+02 0.004 20.4 5.1 53 13-71 37-89 (127)
106 2r7a_A Bacterial heme binding 26.3 95 0.0033 24.5 5.1 39 16-67 52-90 (256)
107 2zkr_f 60S ribosomal protein L 26.2 51 0.0017 27.0 3.3 49 13-70 141-189 (266)
108 2r79_A Periplasmic binding pro 26.0 1.1E+02 0.0037 24.7 5.5 39 16-67 52-90 (283)
109 3f6p_A Transcriptional regulat 25.8 1.5E+02 0.0051 19.7 5.6 49 13-71 36-85 (120)
110 3gt7_A Sensor protein; structu 25.2 1.6E+02 0.0055 20.7 5.9 52 13-70 41-92 (154)
111 3gl9_A Response regulator; bet 25.1 1.4E+02 0.0048 20.0 5.3 48 13-70 36-87 (122)
112 3t6k_A Response regulator rece 24.8 1.7E+02 0.0058 20.0 6.3 53 13-71 38-90 (136)
113 3cnb_A DNA-binding response re 24.7 1.3E+02 0.0044 20.6 5.1 48 13-70 44-95 (143)
114 2zay_A Response regulator rece 24.3 1.4E+02 0.0048 20.6 5.3 48 13-70 42-93 (147)
115 3bbn_B Ribosomal protein S2; s 24.2 2.7E+02 0.0093 22.1 7.4 30 24-65 157-186 (231)
116 1k68_A Phytochrome response re 24.0 1.7E+02 0.0058 19.7 5.9 52 13-70 38-96 (140)
117 3dzc_A UDP-N-acetylglucosamine 23.9 1.5E+02 0.0051 25.4 6.3 47 9-67 97-143 (396)
118 2gkg_A Response regulator homo 23.7 98 0.0033 20.6 4.2 51 13-70 39-90 (127)
119 1n2z_A Vitamin B12 transport p 23.6 1.3E+02 0.0043 23.6 5.4 38 16-66 50-87 (245)
120 1j6o_A TATD-related deoxyribon 23.6 2.8E+02 0.0095 22.0 11.0 50 11-72 28-77 (268)
121 3rst_A Signal peptide peptidas 23.5 97 0.0033 24.7 4.6 59 8-69 30-89 (240)
122 2f6u_A GGGPS, (S)-3-O-geranylg 23.2 2.5E+02 0.0085 22.3 6.9 49 14-70 24-72 (234)
123 3ot5_A UDP-N-acetylglucosamine 22.8 1.4E+02 0.0048 25.7 5.9 47 9-67 100-146 (403)
124 3hh1_A Tetrapyrrole methylase 22.3 1.4E+02 0.0047 20.6 4.7 17 51-67 100-116 (117)
125 3grc_A Sensor protein, kinase; 21.9 1.7E+02 0.006 19.8 5.4 52 13-70 40-91 (140)
126 3vi6_A 60S ribosomal protein L 21.5 2.2E+02 0.0076 20.1 5.8 56 13-85 33-88 (125)
127 1vi6_A 30S ribosomal protein S 21.4 1.5E+02 0.0051 23.2 5.1 16 50-65 129-144 (208)
128 2xsa_A Ogoga, hyaluronoglucosa 21.4 4.3E+02 0.015 23.4 9.4 66 115-187 10-79 (447)
129 4hf7_A Putative acylhydrolase; 21.4 1.4E+02 0.0046 22.7 5.0 52 12-64 67-123 (209)
130 4a18_G RPL30; ribosome, eukary 21.0 2E+02 0.0068 19.4 6.2 56 13-85 28-83 (104)
131 2xzm_B RPS0E; ribosome, transl 20.9 1.3E+02 0.0045 24.2 4.8 15 50-64 128-142 (241)
132 2zkq_b 40S ribosomal protein S 20.8 1.3E+02 0.0043 25.1 4.7 15 50-64 132-146 (295)
133 3kht_A Response regulator; PSI 20.6 1.4E+02 0.0047 20.6 4.6 49 13-71 41-93 (144)
134 2fyw_A Conserved hypothetical 20.3 1.8E+02 0.0061 23.6 5.7 45 181-228 60-105 (267)
135 3bch_A 40S ribosomal protein S 20.3 1.6E+02 0.0054 23.9 5.1 16 50-65 165-180 (253)
136 1y7p_A Hypothetical protein AF 20.1 2.1E+02 0.007 22.7 5.6 49 10-67 131-179 (223)
No 1
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=100.00 E-value=1.7e-34 Score=251.56 Aligned_cols=278 Identities=36% Similarity=0.683 Sum_probs=216.5
Q ss_pred chhhhHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCC-cccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhh
Q 023422 3 WYYRHSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPK-DQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLP 81 (282)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~-~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~ 81 (282)
+++...++.++++++.+++. ++|+||++||++++.... ....+.++.+.+.++.+++|+++++||||.+......+.+
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~-~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD~~~~~~~~~~~ 109 (322)
T 2nxf_A 31 RYYRGSADLLRDAVLQWRRE-RVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWGNHEFYNFSRPSLLS 109 (322)
T ss_dssp ECTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHTTCSEEEECCCHHHHHHCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCCEEEECCCccCCCCCcchHHHHHHHHHHHHHHhcCCcEEEecCCCCcccCCHHHHhh
Confidence 56777889999999999886 899999999999842110 0125677888888888889999999999986444444444
Q ss_pred hhcCCC----------C--CCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCC-CCCCCCCCccc
Q 023422 82 LLKISS----------V--DGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPN-TEKNSPAGLVG 148 (282)
Q Consensus 82 ~l~~~~----------~--~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 148 (282)
.+.... . .+..||++...+++++|+||+..+...+++...+.+..+.+.+.+.++. ...+.|.|+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 189 (322)
T 2nxf_A 110 SRLNSAQRTGTDTGSDLIGDDIYAYEFSPAPNFRFVLLDAYDLSVIGREEESEKHTHSWRILTQHNHNLQDLNLPPVSVG 189 (322)
T ss_dssp STTCCCC------CEECGGGTCCCEEEEEETTEEEEECCTTSBCSSSSCTTSHHHHHHHHHHHHHCCCTTCTTSCSCSSS
T ss_pred hhCCcccccccccccccCCCCceEEEEecCCCEEEEEEcCceecccccCCCChhhHHHHHHHhhcCcccccccCcccccc
Confidence 443210 0 1345778862289999999997776667666555566666667665553 55677888888
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCC
Q 023422 149 LERRFLMFNGAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQG 228 (282)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~ 228 (282)
.++++..+.+.++++|++||++.|+.+...+.++||++|+|+...........++.+++.+++.++++|+++|+||+|..
T Consensus 190 ~~~~~~~~~~~~~~~q~~wL~~~L~~~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~ll~~~~~v~~~~~GH~H~~ 269 (322)
T 2nxf_A 190 LEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADPICLAWNHEAVLSVLRSHQSVLCFIAGHDHDG 269 (322)
T ss_dssp GGGGCSTTCCBCCHHHHHHHHHHHHHHHHHTCEEEEEESSCCCTTSSCGGGSCTTHHHHHHHHHTCTTEEEEEECSCTTC
T ss_pred ccccccccCCccCHHHHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCccccccCHHHHHHHHhcCCCeEEEEcCCcCCC
Confidence 88888888899999999999999998865567899999999987653222345678899999999966999999999999
Q ss_pred CccccCCCCeEEeccccccCCCCCCceEEEEEeCCeEEEEecccccCcccccC
Q 023422 229 GHSIDTHGIHHRVLEAALECPPGTDAFGHIDAYDDRLSLVGTGRMQSTDMCFT 281 (282)
Q Consensus 229 ~~~~~~~~i~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~ 281 (282)
......+|+++++.+++.......++|.+|+++++++.++++++.++|.|+|+
T Consensus 270 ~~~~~~~g~~~i~~~~~~~~~~~~~~y~~v~~~~~~~~~~~~~~~~~~~~~~~ 322 (322)
T 2nxf_A 270 GRCTDSSGAQHITLEGVIETPPHSHAFATAYLYEDRMVMKGRGRVEDLTITYS 322 (322)
T ss_dssp EEEECTTSCEEEECCCGGGCCTTSCEEEEEEECSSEEEEEEEETSCCEEEECC
T ss_pred CceeccCCceEEEecchhhCCCCCCcEEEEEEECCeEEEEeccccCCceeecC
Confidence 88762389999999988776556789999999999999999999999999985
No 2
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=99.94 E-value=7.7e-25 Score=186.61 Aligned_cols=212 Identities=18% Similarity=0.184 Sum_probs=151.6
Q ss_pred hHHHHHHHHHHHHhhc-CCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhh-hhc
Q 023422 7 HSLLVLQNAVQRWNNH-QKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLP-LLK 84 (282)
Q Consensus 7 ~~~~~l~~~~~~~~~~-~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~-~l~ 84 (282)
...+.|+++++.+++. +++|+||++||++++ .....++.+.+.++.+++|+++++||||........+.. ++.
T Consensus 23 ~~~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~-----~~~~~~~~~~~~l~~l~~p~~~v~GNHD~~~~~~~~~~~~~~~ 97 (274)
T 3d03_A 23 DVNAANADVVSQLNALRERPDAVVVSGDIVNC-----GRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQ 97 (274)
T ss_dssp CHHHHHHHHHHHHHTCSSCCSEEEEESCCBSS-----CCHHHHHHHHHHHTTCSSCEEEECCTTSCHHHHHHHHGGGSGG
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEECCCCCCC-----CCHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHhhhhhcC
Confidence 3467899999999876 368999999999973 345667788888888889999999999984211111211 111
Q ss_pred CCCCC-CCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHH
Q 023422 85 ISSVD-GRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKE 163 (282)
Q Consensus 85 ~~~~~-~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (282)
... . +..+|.+. .+++++++||+. ..+. ..+.++++
T Consensus 98 ~~~-~~~~~~~~~~-~~~~~~i~ld~~---~~~~--------------------------------------~~~~~~~~ 134 (274)
T 3d03_A 98 LGS-DANNMRCAVD-DFATRLLFIDSS---RAGT--------------------------------------SKGWLTDE 134 (274)
T ss_dssp GCS-CGGGCCEEEC-SSSSEEEECCCC---CTTC--------------------------------------SSBCCCHH
T ss_pred ccc-CCCceEEEEE-eCCEEEEEEeCC---CCCC--------------------------------------CCCeeCHH
Confidence 111 1 23456775 789999999982 2111 11578899
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCC--CCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEe
Q 023422 164 QIKWLDAVLQDATKLNQKVVVCCHVPLDPGSA--SPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRV 241 (282)
Q Consensus 164 ~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~--~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~ 241 (282)
|++||++.|++. ++.++|+++|+|+..... .+.....+.+++.+++.++++++++|+||+|....... +++++++
T Consensus 135 ~~~wl~~~l~~~--~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~vl~GH~H~~~~~~~-~g~~~~~ 211 (274)
T 3d03_A 135 TISWLEAQLFEG--GDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQY-RQALIST 211 (274)
T ss_dssp HHHHHHHHHHHH--TTSCEEEEESSCSSCCSCTTTGGGSBTTTHHHHHHHHHCTTEEEEEECSSSSCEEEEE-TTEEEEE
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCCCcccCCcccCcccCcCHHHHHHHHHhCCCceEEEeCCCCCchhheE-CCEEEEE
Confidence 999999999986 467899999999876432 22233445678899999985599999999999977665 7777777
Q ss_pred ccccccCC------------CCCCceEEEEEeCCeEEEEe
Q 023422 242 LEAALECP------------PGTDAFGHIDAYDDRLSLVG 269 (282)
Q Consensus 242 ~~~~~~~~------------~~~~~f~~v~~~~~~~~~~~ 269 (282)
.++++... ...++|.+++++++++.++.
T Consensus 212 ~pg~~~~~~~~~~~~~~~~~~~~~gy~i~~i~~~~~~~~~ 251 (274)
T 3d03_A 212 LPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQ 251 (274)
T ss_dssp CCCSSCBCCCCSSCCSCEEBCCCCEEEEEEEETTEEEEEE
T ss_pred cCCcceeeccCCCccccccccCCCceEEEEEeCCcEEEEE
Confidence 77665421 23579999999998866443
No 3
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=99.92 E-value=8.3e-24 Score=185.02 Aligned_cols=210 Identities=20% Similarity=0.204 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHHHhh--cCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh----cCCCEEEecCCCCCCCCChhhhh
Q 023422 7 HSLLVLQNAVQRWNN--HQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK----FNGPAYHMIGNHCLYNLPRHMLL 80 (282)
Q Consensus 7 ~~~~~l~~~~~~~~~--~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~----~~~pv~~v~GNHD~~~~~~~~~~ 80 (282)
.....++++++.+++ . ++|+||++||+++. ...+.++.+.+.++. +++|+++++||||.. ..+.
T Consensus 48 ~~~~~l~~~l~~i~~~~~-~~d~vi~~GDl~~~-----~~~~~~~~~~~~l~~l~~~~~~pv~~v~GNHD~~----~~~~ 117 (330)
T 3ib7_A 48 DADDRLGELLEQLNQSGL-RPDAIVFTGDLADK-----GEPAAYRKLRGLVEPFAAQLGAELVWVMGNHDDR----AELR 117 (330)
T ss_dssp CHHHHHHHHHHHHHHHTC-CCSEEEECSCCBTT-----CCHHHHHHHHHHHHHHHHHHTCEEEECCCTTSCH----HHHH
T ss_pred CHHHHHHHHHHHHHhcCC-CCCEEEECCCCCCC-----CCHHHHHHHHHHHHHHHhhcCCCEEEeCCCCCCH----HHHH
Confidence 357789999999987 5 89999999999983 344555555555543 478999999999973 1222
Q ss_pred hhhc-CCCCCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCC
Q 023422 81 PLLK-ISSVDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGA 159 (282)
Q Consensus 81 ~~l~-~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (282)
..+. ........++.+. .++++++++++. ..++. .+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~-~~~~~~i~lds~---~~~~~--------------------------------------~~~ 155 (330)
T 3ib7_A 118 KFLLDEAPSMAPLDRVCM-IDGLRIIVLDTS---VPGHH--------------------------------------HGE 155 (330)
T ss_dssp HHHHCCCCCCSCCCEEEE-ETTEEEEECCCC---CTTCC--------------------------------------SBC
T ss_pred HHhcccccccCCcceEEE-eCCEEEEEecCC---CCCCC--------------------------------------CCc
Confidence 2222 1112234456675 799999999983 22221 167
Q ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCC--CCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCC
Q 023422 160 VGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSA--SPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGI 237 (282)
Q Consensus 160 ~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~--~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i 237 (282)
++++|++||++.|... .....|+++|+||..... .......+.+++.+++.+++ ++++|+||+|....... +|+
T Consensus 156 ~~~~q~~wl~~~l~~~--~~~~~iv~~Hh~p~~~~~~~~~~~~~~~~~~l~~~l~~~~-v~~v~~GH~H~~~~~~~-~g~ 231 (330)
T 3ib7_A 156 IRASQLGWLAEELATP--APDGTILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTD-VRAILAGHLHYSTNATF-VGI 231 (330)
T ss_dssp CCHHHHHHHHHHTTSC--CTTCEEEECSSCSSCCSSGGGGGGSBSCHHHHHHHHTTSS-EEEEEECSSSSCEEEEE-TTE
T ss_pred cCHHHHHHHHHHHHhc--ccCCeEEEEECCCCCCCccccccccccCHHHHHHHHhccC-ceEEEECCCCCcccceE-CCE
Confidence 8899999999999877 344588999999876542 22233466788999999985 99999999999987666 888
Q ss_pred eEEeccccccC------------CCCCCceEEEEEeCCeEEEEeccc
Q 023422 238 HHRVLEAALEC------------PPGTDAFGHIDAYDDRLSLVGTGR 272 (282)
Q Consensus 238 ~~~~~~~~~~~------------~~~~~~f~~v~~~~~~~~~~~~~~ 272 (282)
.+++.++.+.. ....++|.+|+++++.+.++....
T Consensus 232 ~~~~~gs~~~~~~~~~~~g~~~~~~~~~gy~iv~i~~~~~~~~~v~~ 278 (330)
T 3ib7_A 232 PVSVASATCYTQDLTVAAGGTRGRDGAQGCNLVHVYPDTVVHSVIPL 278 (330)
T ss_dssp EEEECCCSSCEECTTSCTTCCCEESCSCEEEEEEECSSCEEEEEEEC
T ss_pred EEEecCcceeccCCCCCCcceeccCCCCceEEEEEECCCeEEEEecc
Confidence 88887776532 123467999999999877666543
No 4
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=99.90 E-value=3.4e-22 Score=182.01 Aligned_cols=221 Identities=15% Similarity=0.137 Sum_probs=145.3
Q ss_pred hHHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh---cCCCEEEecCCCCCCCCC--------
Q 023422 7 HSLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK---FNGPAYHMIGNHCLYNLP-------- 75 (282)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~---~~~pv~~v~GNHD~~~~~-------- 75 (282)
...+.++++++.+++. +||+||++||++++ .....++.+.+.++. .++|+++++||||.....
T Consensus 76 ~~~~~l~~~~~~~~~~-~~d~vi~~GDl~~~-----~~~~~~~~~~~~l~~l~~~~~~~~~v~GNHD~~~~~~~~~~~~~ 149 (443)
T 2xmo_A 76 YSDEITDAFLADVESK-KTDVLIISGDLTNN-----GEKTSHEELAKKLTQVEKNGTQVFVVPGNHDINNPWARKFEKDK 149 (443)
T ss_dssp GHHHHHHHHHHHHHHH-TCSEEEEESCCBSS-----CCHHHHHHHHHHHHHHHHTTCEEEEECCTTTSSCTTCEEEETTE
T ss_pred cHHHHHHHHHHHHHHc-CCCEEEECCCCCCC-----CCHHHHHHHHHHHHHHHhCCCeEEEECCcCCCCCccccccCCcc
Confidence 4577899999999887 89999999999974 233344444444444 478999999999985421
Q ss_pred --------hhhhhhhhcCCCC-------CCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCC
Q 023422 76 --------RHMLLPLLKISSV-------DGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEK 140 (282)
Q Consensus 76 --------~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (282)
...+.++++.... .....|.+...+++++++||+......++..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~Lds~~~~~~~~~~--------------------- 208 (443)
T 2xmo_A 150 QLPTDTISPTDFSKIYSDFGYEDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTNMQQG--------------------- 208 (443)
T ss_dssp EEECCCCCHHHHHHHTCCCCCTTCSEECSSSSCEEECSBSSEEEEECCCBCCTTHHHHT---------------------
T ss_pred cccccccCHHHHHHHhhhcChhhhhccCCCCceEEEecCCCEEEEEeeCCCcCcccccC---------------------
Confidence 1233344432110 1123344445789999999983221100000
Q ss_pred CCCCCcccccccccccCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCC--CCcccccCHHHHHHHHHccCcEE
Q 023422 141 NSPAGLVGLERRFLMFNGAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSA--SPEALLWNCNEVMDVIHRYNCVK 218 (282)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~--~~~~~~~~~~~~~~~l~~~~~v~ 218 (282)
.....+.++++|++||++.|+.+.+.+.++|+++|+|+..... .+.....+.+++.+++.+++ |+
T Consensus 209 ------------~~~~~g~~~~~ql~wL~~~L~~~~~~~~~~Iv~~H~p~~~~~~~~~~~~~~~~~~~l~~ll~~~~-v~ 275 (443)
T 2xmo_A 209 ------------NPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGA-MD 275 (443)
T ss_dssp ------------SCCCCBCCCHHHHHHHHHHHHHHHHTTCEEEEECSSBSSCSSCC--CCSBCTTHHHHHHHHHHTT-CC
T ss_pred ------------CCCcCCccCHHHHHHHHHHHHHHHHcCCeEEEEECCCCcccccccccccccccHHHHHHHHHHcC-Ce
Confidence 0011267889999999999998866677899999999876432 12223456788999999995 99
Q ss_pred EEEeCcccCCCcccc--CCC--CeEEeccccccCCCCCCceEEEEEeCCe--EEEEec
Q 023422 219 VCLAGHDHQGGHSID--THG--IHHRVLEAALECPPGTDAFGHIDAYDDR--LSLVGT 270 (282)
Q Consensus 219 ~~~~GH~H~~~~~~~--~~~--i~~~~~~~~~~~~~~~~~f~~v~~~~~~--~~~~~~ 270 (282)
++|+||+|....... .+| +..++.++.+. ..++|+++++.++. +.++..
T Consensus 276 lvl~GH~H~~~~~~~~~~~g~~~~~i~~gs~~~---~p~~y~il~i~~~~~~~~~~~~ 330 (443)
T 2xmo_A 276 FSLSGHIHTQNIRSAKSTDGKEITDIVTNALSV---FPHKYGNITYSAKNKNFTYQSQ 330 (443)
T ss_dssp EEEECSSCSCEEEEEECTTSCEEEEEECCCTTS---TTCEEEEEEEETTTTEEEEEEE
T ss_pred EEEECCcccCchhhcccCCCCceEEEEcCcccc---CCCCeEEEEEeCCCceEEEEEE
Confidence 999999999876542 133 33333344332 34699999999876 555443
No 5
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=99.86 E-value=1.2e-21 Score=169.61 Aligned_cols=230 Identities=17% Similarity=0.173 Sum_probs=135.6
Q ss_pred HHHHHHHHHH-HhhcCCccEEEEcCCCCCCCCCCc-ccHHHHHHHHHHHH--hc-CCCEEEecCCCCCCCCChhhh--hh
Q 023422 9 LLVLQNAVQR-WNNHQKLKFVIHFGDIVDGFCPKD-QSLEAVKKVVNEFE--KF-NGPAYHMIGNHCLYNLPRHML--LP 81 (282)
Q Consensus 9 ~~~l~~~~~~-~~~~~~~d~vi~~GDi~d~~~~~~-~~~~~~~~~~~~l~--~~-~~pv~~v~GNHD~~~~~~~~~--~~ 81 (282)
...+.+++.. +++. ++|+||++||++....... ...+..+.+.+.+. .+ ++|+++++||||........+ ..
T Consensus 28 ~~~~~~~l~~~~~~~-~~d~vv~~GD~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~p~~~v~GNHD~~~~~~~~~~~~~ 106 (313)
T 1ute_A 28 EMANAKAIATTVKTL-GADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWHVLAGNHDHLGNVSAQIAYSK 106 (313)
T ss_dssp HHHHHHHHHHHHHHH-CCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTCCEEECCCHHHHHSCHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhc-CCCEEEECCCccCcCCCCCcchHHHHHHHHHHcCchhhcCCCEEEECCCCccCCCccccccccc
Confidence 4455555554 4455 8999999999975321111 11222222222222 25 689999999999853222111 11
Q ss_pred hhcCCCCCCCcceEecC---C--CCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCccccccccccc
Q 023422 82 LLKISSVDGRAYYDFSP---T--PEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMF 156 (282)
Q Consensus 82 ~l~~~~~~~~~~~~~~~---~--~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
...... ....||++.. . ++++||+||+..+....... ....+.+ ..
T Consensus 107 ~~~~~~-~~~~~y~~~~~~~~~~~~~~~i~lds~~~~~~~~~~-------------------~~~~~~~---------~~ 157 (313)
T 1ute_A 107 ISKRWN-FPSPYYRLRFKIPRSNVSVAIFMLDTVTLCGNSDDF-------------------VSQQPER---------PR 157 (313)
T ss_dssp TSTTEE-CCSSSEEEEEECTTSSCEEEEEECCHHHHHCCGGGS-------------------TTCSCCS---------CS
T ss_pred cCCCcc-CcccceEEEEecCCCCceEEEEEEEChHHhCcCccc-------------------cccccCC---------cc
Confidence 100000 0133455431 1 48999999984321100000 0000000 01
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCC
Q 023422 157 NGAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHG 236 (282)
Q Consensus 157 ~~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~ 236 (282)
.+.++++|++||++.|+.. +..++|+++|+|+........ .....+++.+++.+++ |+++|+||+|........++
T Consensus 158 ~~~~~~~q~~wL~~~L~~~--~~~~~iv~~H~p~~~~~~~~~-~~~~~~~l~~~l~~~~-v~~~l~GH~H~~~~~~~~~g 233 (313)
T 1ute_A 158 NLALARTQLAWIKKQLAAA--KEDYVLVAGHYPVWSIAEHGP-THCLVKQLLPLLTTHK-VTAYLCGHDHNLQYLQDENG 233 (313)
T ss_dssp CHHHHHHHHHHHHHHHHHC--CCSEEEEECSSCSSCCSSSCC-CHHHHHHTHHHHHHTT-CSEEEECSSSSEEEEECTTC
T ss_pred ccchHHHHHHHHHHHHHhC--CCCeEEEEECCCCccCCCCCC-cHHHHHHHHHHHHHcC-CcEEEECChhhhhhccCCCC
Confidence 2457799999999999987 347899999999876542110 0011356778888885 99999999998766553478
Q ss_pred CeEEeccccccCC---------C------------CCCceEEEEEeCCeEEEEeccc
Q 023422 237 IHHRVLEAALECP---------P------------GTDAFGHIDAYDDRLSLVGTGR 272 (282)
Q Consensus 237 i~~~~~~~~~~~~---------~------------~~~~f~~v~~~~~~~~~~~~~~ 272 (282)
+.+++.++.+... + ...+|.+++++++.+.++.+..
T Consensus 234 ~~~i~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gy~~l~v~~~~~~~~~~~~ 290 (313)
T 1ute_A 234 LGFVLSGAGNFMDPSKKHLRKVPNGYLRFHFGAENSLGGFAYVEITPKEMSVTYIEA 290 (313)
T ss_dssp CEEEEECBSSCCCCCCTTGGGSCTTCEEEEECCTTSCCEEEEEEECSSCEEEEEEET
T ss_pred ceEEEECCCcCcCccccccccCCCcccceeccCcCCCCceEEEEEEcCEEEEEEEcC
Confidence 9888887765321 0 1259999999998888776654
No 6
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=99.84 E-value=3.7e-20 Score=162.16 Aligned_cols=105 Identities=10% Similarity=0.080 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeE
Q 023422 160 VGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHH 239 (282)
Q Consensus 160 ~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~ 239 (282)
..++|++||++.|.. ..++||++|+|++....... .....+++.++|.+++ |+++|+||+|....... +++.+
T Consensus 175 ~~~~Ql~WLe~~L~~----~~~~IV~~HhP~~~~~~~~~-~~~l~~~l~~ll~~~~-VdlvlsGH~H~~~~~~~-~g~~~ 247 (342)
T 3tgh_A 175 AWNDLKSQLSVAKKI----ADFIIVVGDQPIYSSGYSRG-SSYLAYYLLPLLKDAE-VDLYISGHDNNMEVIED-NDMAH 247 (342)
T ss_dssp HHHHHHHHHHHHHHH----CSEEEEECSSCSSCSSTTCC-CHHHHHHTHHHHHHTT-CCEEEECSSSSEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHhhcc----CCcEEEEECCCCCCCCCCCC-cHHHHHHHHHHHHHcC-CCEEEECCCcceeEEee-CCcEE
Confidence 347999999999943 36999999999987653110 1112467889999995 99999999999987666 78989
Q ss_pred EeccccccCC-------------CCCCceEEEEEeCCeEEEEecc
Q 023422 240 RVLEAALECP-------------PGTDAFGHIDAYDDRLSLVGTG 271 (282)
Q Consensus 240 ~~~~~~~~~~-------------~~~~~f~~v~~~~~~~~~~~~~ 271 (282)
++.++.+... ....+|.++++.++++.++.++
T Consensus 248 iv~Ga~g~~~~~~~~~~~~s~f~~~~~Gf~~l~v~~~~l~~~~~~ 292 (342)
T 3tgh_A 248 ITCGSGSMSQGKSGMKNSKSLFFSSDIGFCVHELSNNGIVTKFVS 292 (342)
T ss_dssp EEECCSSCCCCCCSSCCTTEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred EEeCccccccccCCCCCCcceeecCCCcEEEEEEECCEEEEEEEE
Confidence 9888765431 1346899999999998888776
No 7
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=99.78 E-value=5.7e-18 Score=153.37 Aligned_cols=209 Identities=14% Similarity=0.123 Sum_probs=129.4
Q ss_pred HHHHHHhhc-CCccEEEEcCCCCCCCCCC---cccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCC-------hhhhhhh
Q 023422 14 NAVQRWNNH-QKLKFVIHFGDIVDGFCPK---DQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLP-------RHMLLPL 82 (282)
Q Consensus 14 ~~~~~~~~~-~~~d~vi~~GDi~d~~~~~---~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~-------~~~~~~~ 82 (282)
++++.+.+. .++|+||++||++...... ...++.+..+++.+.. .+|+++++||||..... ...+...
T Consensus 143 ~~l~~i~~~~~~~D~vl~~GD~~y~~~~~~~~~~~~~~~~~~l~~l~~-~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~ 221 (426)
T 1xzw_A 143 TTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSVA-YQPWIWTAGNHEIDYAPDIGEYQPFVPFTNR 221 (426)
T ss_dssp HHHHHHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHHHT-TSCEECCCCGGGCCCBGGGTBCSTTHHHHHH
T ss_pred HHHHHHHhCCCCCCEEEeCCChhhcccCCcccchHHHHHHHHHHHHHh-cCCEEEeccccccccCCccccccCChhheEE
Confidence 445555554 3799999999999632111 1123334444444433 57999999999986421 0123333
Q ss_pred hcCCC----CCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCC
Q 023422 83 LKISS----VDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNG 158 (282)
Q Consensus 83 l~~~~----~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (282)
+..+. .....||++. .++++||+||+.. . .
T Consensus 222 f~~p~~~~~~~~~~~ys~~-~g~~~~i~Ldt~~---~------------------------------------------~ 255 (426)
T 1xzw_A 222 YPTPHEASGSGDPLWYAIK-RASAHIIVLSSYS---G------------------------------------------F 255 (426)
T ss_dssp SCCCCGGGTCSSTTSEEEE-ETTEEEEECCTTS---C------------------------------------------C
T ss_pred EeCCcccCCCCCCCeEEEE-ECCEEEEEeeCcc---c------------------------------------------C
Confidence 33331 1245688886 7889999999821 0 0
Q ss_pred CCCHHHHHHHHHHHHHHhh-CCCeEEEEEeeCCCCCCCC-CcccccCHHHHHHHHHccCcEEEEEeCcccCCCccc----
Q 023422 159 AVGKEQIKWLDAVLQDATK-LNQKVVVCCHVPLDPGSAS-PEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSI---- 232 (282)
Q Consensus 159 ~~~~~~~~wl~~~l~~~~~-~~~~~il~~H~p~~~~~~~-~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~---- 232 (282)
....+|++||++.|++... +..++||++|+|++..... ........+++.++|.+++ |+++|+||+|..+...
T Consensus 256 ~~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~r~~l~~ll~~~~-VdlvlsGH~H~~~r~~p~~~ 334 (426)
T 1xzw_A 256 VKYSPQYKWFTSELEKVNRSETPWLIVLVHAPLYNSYEAHYMEGEAMRAIFEPYFVYYK-VDIVFSGHVHSYERSERVSN 334 (426)
T ss_dssp STTSHHHHHHHHHHHHCCTTTCCEEEEECSSCSSCCBSTTTTTTHHHHHHHHHHHHHTT-CSEEEECSSSSEEEECSEEC
T ss_pred CCCHHHHHHHHHHHHhhhhcCCCEEEEEeccCceeCCCcccCCCHHHHHHHHHHHHHhC-CCEEEEcChhhheeeeeecC
Confidence 1237899999999998642 3446999999998764320 0001112467888899995 9999999999876432
Q ss_pred --------------cCCCCeEEeccccccCC-----------------CCCCceEEEEEeCC-eEEEEec
Q 023422 233 --------------DTHGIHHRVLEAALECP-----------------PGTDAFGHIDAYDD-RLSLVGT 270 (282)
Q Consensus 233 --------------~~~~i~~~~~~~~~~~~-----------------~~~~~f~~v~~~~~-~~~~~~~ 270 (282)
..+++.|++.|+..... ....+|..+++.++ .+.++-+
T Consensus 335 ~~~~~~~g~~~~~~~~~g~~yi~~G~gG~~~~~~~~~~~~~p~~s~~~~~~~G~~~l~v~n~t~~~~~~~ 404 (426)
T 1xzw_A 335 VAYNIVNAKCTPVSDESAPVYITIGDGGNSEGLASEMTQPQPSYSAFREASFGHGIFDIKNRTHAHFSWH 404 (426)
T ss_dssp CCCCSTTCCCCCEECTTSCEEEEECCSCCTTCCCCCBCSSCCTTEEEEECCCEEEEEEECSSSEEEEEEE
T ss_pred ccccccCCccccccCCCccEEEEeCCCccccccccccCCCCCCceeEEecCCCeEEEEEEcCCeEEEEEE
Confidence 12567777776543210 11246778888655 3655554
No 8
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=99.73 E-value=5.9e-17 Score=133.82 Aligned_cols=200 Identities=10% Similarity=-0.029 Sum_probs=114.5
Q ss_pred HHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhc----C
Q 023422 10 LVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLK----I 85 (282)
Q Consensus 10 ~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~----~ 85 (282)
..++++++.+.+. ++|+||++||+++.. ...+.+..+++.+.++++|+++|+||||.... ..+...+. .
T Consensus 19 ~~~~~~~~~~~~~-~~D~vi~~GDl~~~~----~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~--~~~~~~~~~~~~~ 91 (228)
T 1uf3_A 19 EALEKFVKLAPDT-GADAIALIGNLMPKA----AKSRDYAAFFRILSEAHLPTAYVPGPQDAPIW--EYLREAANVELVH 91 (228)
T ss_dssp HHHHHHHTHHHHH-TCSEEEEESCSSCTT----CCHHHHHHHHHHHGGGCSCEEEECCTTSCSHH--HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhc-CCCEEEECCCCCCCC----CCHHHHHHHHHHHHhcCCcEEEECCCCCchhH--HHHHhhhhhhccC
Confidence 4567778777777 899999999999732 14566677788888888899999999998532 11221110 0
Q ss_pred CCC--CCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHH
Q 023422 86 SSV--DGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKE 163 (282)
Q Consensus 86 ~~~--~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (282)
+.. -......+ .+++.++++++.....+.... .+ + ......
T Consensus 92 ~~~~~l~~~~~~~--~~~~~i~g~~~~~~~~~~~~~--------------------~~----~-----------~~~~~~ 134 (228)
T 1uf3_A 92 PEMRNVHETFTFW--RGPYLVAGVGGEIADEGEPEE--------------------HE----A-----------LRYPAW 134 (228)
T ss_dssp TTEEECBTSEEEE--TTTEEEEEECSEEESSSCCBS--------------------SS----S-----------CEEEHH
T ss_pred cceEEcccceEee--CCCcEEecCCCCcCCCCccCh--------------------hh----c-----------ccchhh
Confidence 000 00111112 237888888752211000000 00 0 001111
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEecc
Q 023422 164 QIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLE 243 (282)
Q Consensus 164 ~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~ 243 (282)
+..|..+.|.+. +..+.|+++|+||..... .....+.+.+++.+.+ ++++++||+| ...... +++.+++.+
T Consensus 135 ~~~~~~~~l~~~--~~~~~il~~H~p~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~GH~H-~~~~~~-~~~~~in~G 205 (228)
T 1uf3_A 135 VAEYRLKALWEL--KDYPKIFLFHTMPYHKGL----NEQGSHEVAHLIKTHN-PLLVLVAGKG-QKHEML-GASWVVVPG 205 (228)
T ss_dssp HHHHHHGGGGGS--CSCCEEEEESSCBCBTTT----BTTSBHHHHHHHHHHC-CSEEEECCSS-CEEEEE-TTEEEEECC
T ss_pred hHHHHHHHHHhC--CCCCeEEEEccCcccCCc----cccCHHHHHHHHHHhC-CCEEEEcccc-cCcccc-CCceEEEec
Confidence 222333333332 235889999999865311 1123356777777775 8999999999 433233 566556655
Q ss_pred ccccCCCCCCceEEEEEeCCeEEE
Q 023422 244 AALECPPGTDAFGHIDAYDDRLSL 267 (282)
Q Consensus 244 ~~~~~~~~~~~f~~v~~~~~~~~~ 267 (282)
+.. .++|.++++++.++.+
T Consensus 206 s~~-----~~~~~i~~~~~~~~~~ 224 (228)
T 1uf3_A 206 DLS-----EGEYSLLDLRARKLET 224 (228)
T ss_dssp BGG-----GTEEEEEETTTTEEEE
T ss_pred ccC-----CCceEEEEecceEeee
Confidence 554 4589999987644443
No 9
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=99.73 E-value=5.1e-17 Score=137.19 Aligned_cols=205 Identities=12% Similarity=0.130 Sum_probs=114.4
Q ss_pred HHHHHHHHHhhcCCccEEEEcCCCCCCCCCCc--------------c--------cHHHHHHHHHHHHhcCCCEEEecCC
Q 023422 11 VLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKD--------------Q--------SLEAVKKVVNEFEKFNGPAYHMIGN 68 (282)
Q Consensus 11 ~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~--------------~--------~~~~~~~~~~~l~~~~~pv~~v~GN 68 (282)
.+.++++.+... ++|+||++||+++...... . ..+.+..+++.+...++|+++|+||
T Consensus 20 ~~~~~l~~~~~~-~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~~~~pv~~v~GN 98 (260)
T 2yvt_A 20 LLPKLKGVIAEK-QPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFREIGELGVKTFVVPGK 98 (260)
T ss_dssp GHHHHHHHHHHH-CCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCT
T ss_pred HHHHHHHHHHhc-CCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 466777777777 8999999999997321000 0 0033555666666667899999999
Q ss_pred CCCCCCChhhhhhhhcCCCC-----CCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCC
Q 023422 69 HCLYNLPRHMLLPLLKISSV-----DGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSP 143 (282)
Q Consensus 69 HD~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (282)
||.... ..+.+.+..... .-.....+. .+++.++++++..... ....
T Consensus 99 HD~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~g~~~~~~~~-~~~~------------------------ 150 (260)
T 2yvt_A 99 NDAPLK--IFLRAAYEAETAYPNIRVLHEGFAGW-RGEFEVIGFGGLLTEH-EFEE------------------------ 150 (260)
T ss_dssp TSCCHH--HHHHHHHHTTTTCTTEEECSSEEEEE-TTTEEEEEECSEEESS-CCBS------------------------
T ss_pred CCchhh--hhHHHHhhhccCCcceEEecCcceEE-ECCEEEEecCCCcCCC-CcCH------------------------
Confidence 998521 111122221100 000011133 5688888887522110 0000
Q ss_pred CCcccccccccccCCCCCHHHHHHHH----HHHHHHhhCCCeEEEEEeeCCCCCCC-C--CcccccCHHHHHHHHHccCc
Q 023422 144 AGLVGLERRFLMFNGAVGKEQIKWLD----AVLQDATKLNQKVVVCCHVPLDPGSA-S--PEALLWNCNEVMDVIHRYNC 216 (282)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~wl~----~~l~~~~~~~~~~il~~H~p~~~~~~-~--~~~~~~~~~~~~~~l~~~~~ 216 (282)
..+. ....|+. +.+.+. ...+.|+++|+||..... . ..........+.+++.+++
T Consensus 151 --------------~~~~-~~~~~~~~~~l~~l~~~--~~~~~Il~~H~pp~~~~~d~~~~~~~~~~~~~l~~~~~~~~- 212 (260)
T 2yvt_A 151 --------------DFVL-KYPRWYVEYILKFVNEL--KPRRLVTIFYTPPIGEFVDRTPEDPKHHGSAVVNTIIKSLN- 212 (260)
T ss_dssp --------------SSSC-EEEHHHHHHHGGGGGGS--CCCEEEEEESSCCSCSSTTCBTTBSCCCSCHHHHHHHHHHC-
T ss_pred --------------HHHh-hcchhhHHHHHHHHHhc--CCCCEEEEECCCccccccccCcccccccCcHHHHHHHHHhC-
Confidence 0010 0002332 222222 235679999999864311 1 1111233467778888775
Q ss_pred EEEEEeCcccCCCccccCCCCeEEeccccccCCCCCCceEEEEEeCCeEEEEe
Q 023422 217 VKVCLAGHDHQGGHSIDTHGIHHRVLEAALECPPGTDAFGHIDAYDDRLSLVG 269 (282)
Q Consensus 217 v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~ 269 (282)
+++++|||+| ...... +++.+++.|+... ++|.+++++++++.+..
T Consensus 213 ~~~vl~GH~H-~~~~~~-~~~~~in~Gs~~~-----g~~~ii~~~~~~~~~~~ 258 (260)
T 2yvt_A 213 PEVAIVGHVG-KGHELV-GNTIVVNPGEFEE-----GRYAFLDLTQHKIKLEQ 258 (260)
T ss_dssp CSEEEECSSC-CEEEEE-TTEEEEECCBGGG-----TEEEEEETTTTEEEEEE
T ss_pred CCEEEECCcc-CCcEEe-CCEEEEeCCCCCC-----CceEEEEEcCCEEEeee
Confidence 8999999999 433333 5555566665543 38999999988887654
No 10
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Probab=99.72 E-value=2.3e-17 Score=149.33 Aligned_cols=168 Identities=18% Similarity=0.212 Sum_probs=106.8
Q ss_pred HHHHHhhc-CCccEEEEcCCCCCCCCCC---cccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCCh-------hhhhhhh
Q 023422 15 AVQRWNNH-QKLKFVIHFGDIVDGFCPK---DQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPR-------HMLLPLL 83 (282)
Q Consensus 15 ~~~~~~~~-~~~d~vi~~GDi~d~~~~~---~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~-------~~~~~~l 83 (282)
+++.+.+. .++|+||++||+++..... ...++.+..+++.+.. .+|+++++||||...... ..+...+
T Consensus 137 ~l~~~~~~~~~~D~vl~~GDl~y~~~~~~~~~~~~~~~~~~l~~~~~-~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f 215 (424)
T 2qfp_A 137 TLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVA-YQPWIWTAGNHEIEFAPEINETEPFKPFSYRY 215 (424)
T ss_dssp HHHHHHTCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHHHHT-TSCEEECCCHHHHCCBGGGTBCSTTHHHHHHC
T ss_pred HHHHHHhCCCCCCEEEEcCccccccccccccchHHHHHHHHHHHHHh-cCCeEeecCCcccccCCcccccccchhhhhhc
Confidence 45666554 2799999999999732111 1223444444444443 479999999999853210 1222333
Q ss_pred cCCC----CCCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCC
Q 023422 84 KISS----VDGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGA 159 (282)
Q Consensus 84 ~~~~----~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (282)
..+. .....||++. .++++||+||+.. .. +
T Consensus 216 ~~P~~~~~~~~~~~ys~~-~g~~~~i~Ldt~~------~~--------------------------------------~- 249 (424)
T 2qfp_A 216 HVPYEASQSTSPFWYSIK-RASAHIIVLSSYS------AY--------------------------------------G- 249 (424)
T ss_dssp CCCGGGGTCSSTTSEEEE-ETTEEEEECCTTS------CC--------------------------------------S-
T ss_pred cCCccccCCCCCcEEEEE-ECCEEEEEecCCc------cC--------------------------------------C-
Confidence 3321 2345688887 7899999999821 00 1
Q ss_pred CCHHHHHHHHHHHHHHhh-CCCeEEEEEeeCCCCCCCC-CcccccCHHHHHHHHHccCcEEEEEeCcccCCCc
Q 023422 160 VGKEQIKWLDAVLQDATK-LNQKVVVCCHVPLDPGSAS-PEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGH 230 (282)
Q Consensus 160 ~~~~~~~wl~~~l~~~~~-~~~~~il~~H~p~~~~~~~-~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~ 230 (282)
...+|++||++.|+.... ...++|+++|+|+...... ........+++.+++.+++ |+++|+||+|....
T Consensus 250 ~~~~Q~~WL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~r~~l~~ll~~~~-VdlvlsGH~H~y~r 321 (424)
T 2qfp_A 250 RGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYK-VDVVFAGHVHAYER 321 (424)
T ss_dssp TTSHHHHHHHHHHHHCCTTTCCEEEEECSSCSSCCBSTTTTTTHHHHHHHHHHHHHTT-CSEEEECSSSSEEE
T ss_pred CcHHHHHHHHHHHhhhcccCCCEEEEEeCcCceecCcccccccHHHHHHHHHHHHHhC-CcEEEECChhhhhe
Confidence 124799999999998643 2457899999998764320 0000011356788888885 99999999998543
No 11
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=99.67 E-value=4.2e-16 Score=136.81 Aligned_cols=221 Identities=9% Similarity=-0.028 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCC-CCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGD-IVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKIS 86 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GD-i~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~~ 86 (282)
....++++++.+++. ++|+||++|| ++|...+.....+.+..+++.+... +|+++++||||... . ..+.+++...
T Consensus 46 ~~~~l~~lv~~~~~~-~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~~-~pv~~i~GNHD~~~-~-~~~~~~l~~~ 121 (336)
T 2q8u_A 46 LKKALDKVVEEAEKR-EVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT-APVVVLPGNHDWKG-L-KLFGNFVTSI 121 (336)
T ss_dssp HHHHHHHHHHHHHHH-TCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHH-SCEEECCC-------C-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECCCCCccc-c-ccHHHHHHhc
Confidence 367788889988888 8999999999 9985433222222333444444433 89999999999865 2 2233333211
Q ss_pred C--C--CCCcc----eEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCC
Q 023422 87 S--V--DGRAY----YDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNG 158 (282)
Q Consensus 87 ~--~--~~~~~----~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (282)
. . ..... ..+. .+++.+++++.. .+.. +. ...+
T Consensus 122 g~nv~v~~~~~~~~~~~~~-~~~v~i~glp~~----------~~~~------~~----------------------~~~~ 162 (336)
T 2q8u_A 122 SSDITFVMSFEPVDVEAKR-GQKVRILPFPYP----------DESE------AL----------------------RKNE 162 (336)
T ss_dssp CSSEEECCSSSCEEEECTT-SCEEEEEEECCC---------------------------------------------CCS
T ss_pred CCEEEEEecccccCceEEe-CCCEEEEECCCC----------CHHH------HH----------------------HHhh
Confidence 0 0 00000 0111 234555555320 0000 00 0001
Q ss_pred CCCHHHHHHHHHHHHHHh-hCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCC
Q 023422 159 AVGKEQIKWLDAVLQDAT-KLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGI 237 (282)
Q Consensus 159 ~~~~~~~~wl~~~l~~~~-~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i 237 (282)
...+++++|+.+.+.... .++.+.|+++|.|+......+.........+...+... +++++++||+|..+.... +.
T Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~Ill~H~~~~~~~~~~~~~~~~~~~v~~~l~~~-~~d~v~~GH~H~~~~~~~--~~ 239 (336)
T 2q8u_A 163 GDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGYAGIEQGREIIINRALIPS-VVDYAALGHIHSFREIQK--QP 239 (336)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCSSEEEEEEESEETTCC--------CCCEECGGGSCT-TSSEEEEESCSSCEEEEE--TT
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCEEEEECccccCCCCCCCccchhhcccCHHHccc-cCCEEEEccccCceEeCC--Cc
Confidence 222567888877776532 35678999999997643210000000000011122333 488999999999876433 33
Q ss_pred eEEeccccccCC----CCCCceEEEEEeCCe-EEEEeccccc
Q 023422 238 HHRVLEAALECP----PGTDAFGHIDAYDDR-LSLVGTGRMQ 274 (282)
Q Consensus 238 ~~~~~~~~~~~~----~~~~~f~~v~~~~~~-~~~~~~~~~~ 274 (282)
..++.|++.... ...++|.+|++.++. +.++-..-.+
T Consensus 240 ~i~y~GS~~~~s~~e~~~~~~~~lv~i~~~~~~~v~~i~~~~ 281 (336)
T 2q8u_A 240 LTIYPGSLIRIDFGEEADEKGAVFVELKRGEPPRYERIDASP 281 (336)
T ss_dssp EEEECCCSSCCSGGGTTCCCEEEEEEEETTSCCEEEEEECCC
T ss_pred cEEECCCCcCCCccccCCCCEEEEEEEeCCCccEEEEEECCC
Confidence 446666654331 236799999998653 5554444333
No 12
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=99.60 E-value=2.5e-14 Score=127.81 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYN 73 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~ 73 (282)
...+.++++.+.+. ++|+||++||+++...+.......+..+++.+...++||++|+||||...
T Consensus 46 ~~~l~~~v~~~~~~-~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~~~~pv~~v~GNHD~~~ 109 (386)
T 3av0_A 46 YDSFKLCIKKILEI-KPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHENNIKVYIVAGNHEMPR 109 (386)
T ss_dssp HHHHHHHHHHHHTT-CCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHHTTCEEEECCCGGGSCS
T ss_pred HHHHHHHHHHHHHc-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEcCCCCCCc
Confidence 45788888888887 89999999999985433211222233334444444789999999999854
No 13
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=99.59 E-value=1.1e-14 Score=129.74 Aligned_cols=215 Identities=11% Similarity=0.059 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCC-CCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcC-
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIV-DGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKI- 85 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~-d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~- 85 (282)
....+.++++.+.+. ++|+||++||++ |+..+.....+.+..++..+... +|+++|+||||..+. ..+......
T Consensus 28 ~~~~l~~l~~~~~~~-~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~~~-~~v~~i~GNHD~~~~--~~~~~~~~~~ 103 (379)
T 3tho_B 28 LKKALDKVVEEAEKR-EVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT-APVVVLPGNQDWKGL--KLFGNFVTSI 103 (379)
T ss_dssp HHHHHHHHHHHHHHH-TCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHHHH-SCEEECCCTTSCTTH--HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc-CCCEEEECCCccccCCCCCHHHHHHHHHHHHHHHhC-CCEEEEcCCCccccC--cccccccccc
Confidence 345677777777777 899999999999 75443333444555566666666 899999999996421 111111110
Q ss_pred CC-C---CCCcceEecCCCC--eEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCC
Q 023422 86 SS-V---DGRAYYDFSPTPE--YRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGA 159 (282)
Q Consensus 86 ~~-~---~~~~~~~~~~~~~--~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (282)
+. . ....-+.+....| +.+.++. ...+.. ....
T Consensus 104 ~~~~~~~~~~~~v~l~~~~G~~v~i~glp----------~~~~~~-------------------------------~~~~ 142 (379)
T 3tho_B 104 SSDITFVMSFEPVDVEAKRGQKVRILPFP----------YPDESE-------------------------------ALRK 142 (379)
T ss_dssp CSSEEECCSSCCEEEECTTCCEEEEEEEC----------CCCCC-----------------------------------C
T ss_pred CCcceeecccceEEEEcCCCCEEEEEECC----------CCCHHH-------------------------------Hhhh
Confidence 00 0 0000011211122 3333332 100000 0012
Q ss_pred CCHHHHHHHHHHHH----HHhhCCCeEEEEEeeCCCCCCC-CCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccC
Q 023422 160 VGKEQIKWLDAVLQ----DATKLNQKVVVCCHVPLDPGSA-SPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDT 234 (282)
Q Consensus 160 ~~~~~~~wl~~~l~----~~~~~~~~~il~~H~p~~~~~~-~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~ 234 (282)
+..++.+|+.+.+. ....++...|+++|.++..... .+...... ..+...+... .++++++||+|..+.. .
T Consensus 143 ~~~~~~~~l~~~l~~~~~~~~~~~~~~I~l~H~~v~g~~~~~~se~~~~-~~v~~~~~~~-~~dyvalGH~H~~q~~-~- 218 (379)
T 3tho_B 143 NEGDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGYAGIEQGRE-IIINRALIPS-VVDYAALGHIHSFREI-Q- 218 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEESCBSCCCC-------CS-CCBCGGGSCT-TSSEEEEESCSSCEEE-E-
T ss_pred hccchHHHHHHHHHHHHHHhcCCCCCeEEEEeccccCCccCCCCccccc-cccCHHHcCc-CCCEEEcccccCCeEe-C-
Confidence 33567788887776 3223567889999998764331 11000000 0111122223 4789999999999432 2
Q ss_pred CCCeEEeccccccCC----CCCCceEEEEEeCCe-EEEEecc
Q 023422 235 HGIHHRVLEAALECP----PGTDAFGHIDAYDDR-LSLVGTG 271 (282)
Q Consensus 235 ~~i~~~~~~~~~~~~----~~~~~f~~v~~~~~~-~~~~~~~ 271 (282)
++...++.||+.... ...++|.+|++.++. +.++-..
T Consensus 219 ~~~~i~y~GS~~~~~f~E~~~~k~~~lv~~~~~~~~~v~~i~ 260 (379)
T 3tho_B 219 KQPLTIYPGSLIRIDFGEEADEKGAVFVELKRGEPPRYERID 260 (379)
T ss_dssp ETTEEEECCCSSCCSGGGSSSCCEEEEEECCSSSCCEEEEEE
T ss_pred CCCcEEecCCCCCCCcccccCCCEEEEEEEcCCCcceEEEeC
Confidence 223446666664432 235789999998654 5555444
No 14
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=99.51 E-value=1e-14 Score=122.61 Aligned_cols=115 Identities=6% Similarity=-0.090 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHHHHhh-CCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCC
Q 023422 158 GAVGKEQIKWLDAVLQDATK-LNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHG 236 (282)
Q Consensus 158 ~~~~~~~~~wl~~~l~~~~~-~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~ 236 (282)
+.+++++++||.+....... .+...|+++|.+|............+.+++.+++..++++++++|||+|....... ++
T Consensus 108 ~~l~~~~~~~L~~lp~~~~~~~~~~~i~~~H~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vi~GHtH~~~~~~~-~~ 186 (252)
T 1nnw_A 108 EKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSPINPFDGEVLAEQPTSYYEAIMRPVKDYEMLIVASPMYPVDAMT-RY 186 (252)
T ss_dssp HHHHHHHHHHHHTSCSCEEEEETTEEEEEESSCSSCTTTCCCCSSCCHHHHHHHHGGGTTSSEEEESTTCSEEEEEE-TT
T ss_pred HHCCHHHHHHHHhCCceEEEeeCCcEEEEEcCCCCCCcccccCCCCCHHHHHHHHhcCCCCCEEEECCccccceEec-CC
Confidence 34667888998764322211 13457889999873221100011123467788887773489999999999877665 77
Q ss_pred CeEEeccccccCC--CCCCceEEEEEeCCeEEEEecccc
Q 023422 237 IHHRVLEAALECP--PGTDAFGHIDAYDDRLSLVGTGRM 273 (282)
Q Consensus 237 i~~~~~~~~~~~~--~~~~~f~~v~~~~~~~~~~~~~~~ 273 (282)
+.+++.|+..... ...++|.++++.+..+.+......
T Consensus 187 ~~~in~Gs~~~~~~~~~~~~y~il~~~~~~v~~~~v~yd 225 (252)
T 1nnw_A 187 GRVVCPGSVGFPPGKEHKATFALVDVDTLKPKFIEVEYD 225 (252)
T ss_dssp EEEEEECCSSSCSSSSCCEEEEEEETTTCCEEEEEECCC
T ss_pred eEEEECCCccCCCCCCCcceEEEEECCCCeEEEEEeCCC
Confidence 7777776654322 135689999998877777666543
No 15
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=99.48 E-value=1.3e-13 Score=117.19 Aligned_cols=196 Identities=12% Similarity=0.051 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKISSV 88 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~~~~ 88 (282)
+..|+++++.+... ++|.|+++||+++.. + .. ..+++.+.++ .|+++|+||||. .+.......
T Consensus 24 ~~~l~~vl~~~~~~-~~D~ii~~GDlv~~g-~--~~----~~~~~~l~~~-~~~~~v~GNhD~------~~~~~~~~~-- 86 (270)
T 3qfm_A 24 TTALEAVLADARQL-GVDEYWLLGDILMPG-T--GR----RRILDLLDQL-PITARVLGNWED------SLWHGVRKE-- 86 (270)
T ss_dssp HHHHHHHHHHHHHT-TCCEEEECSCCSSSS-S--CS----HHHHHHHHTS-CEEEECCCHHHH------HHHHHHTTC--
T ss_pred HHHHHHHHHHHHhc-CCCEEEEcCCCCCCC-C--CH----HHHHHHHHcc-CCEEEEcCChHH------HHHHhhccc--
Confidence 56788899999887 899999999999732 1 11 3455566655 379999999996 222222110
Q ss_pred CCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHHHHHHH
Q 023422 89 DGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKEQIKWL 168 (282)
Q Consensus 89 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl 168 (282)
+.+. .+ . .. .......+. ...+++++++||
T Consensus 87 -----~~~~-~~--------~---~~--------~~~~~~~~~-------------------------~~~L~~~~~~~L 116 (270)
T 3qfm_A 87 -----LDST-RP--------S---QR--------YLLRQCQYV-------------------------LEEISLEEIEVL 116 (270)
T ss_dssp -----SCTT-SH--------H---HH--------HHHHHHHHH-------------------------HTTSCHHHHHHH
T ss_pred -----cCCC-cH--------H---HH--------HHHHHHHHH-------------------------HHHcCHHHHHHH
Confidence 0000 00 0 00 000001111 146778999998
Q ss_pred HHHHHHHh-hCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEecccccc
Q 023422 169 DAVLQDAT-KLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALE 247 (282)
Q Consensus 169 ~~~l~~~~-~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~ 247 (282)
...-.... +-+...|+++|..|..............+.+.+++...+ ++++++||+|........+++.+++.||.+.
T Consensus 117 ~~LP~~~~~~~~g~~i~lvHg~p~~~~~~~~~~~~~~~~l~~~~~~~~-~d~~i~GHtH~~~~~~~~~~~~~iNpGSvg~ 195 (270)
T 3qfm_A 117 HNQPLQIHRQFGDLTVGISHHLPDKNWGRELIHTGKQEEFDRLVTHPP-CDIAVYGHIHQQLLRYGTGGQLIVNPGSIGQ 195 (270)
T ss_dssp HSCCSEEEEEETTEEEEEESSBTTBSSSSTTSTTCCHHHHHHTTTTTT-CSEEECCSSCSEEEEECTTSCEEEEECCSSS
T ss_pred HhCCCceEEEECCcEEEEEECCCCCCCCceecCCCcHHHHHHHhcccC-CCEEEECCcCchHheeccCCEEEEECCCccC
Confidence 86543321 113456778897765321101111223455666666664 8899999999876655336777777777654
Q ss_pred CCC--------CCCceEEEEEeCCe---EEEEeccc
Q 023422 248 CPP--------GTDAFGHIDAYDDR---LSLVGTGR 272 (282)
Q Consensus 248 ~~~--------~~~~f~~v~~~~~~---~~~~~~~~ 272 (282)
... ...+|.++++..+. +.+....+
T Consensus 196 pr~~~~~~~~~~~asyaild~~~~~~~~v~~~rv~Y 231 (270)
T 3qfm_A 196 PFFLDAQLRKDLRAQYMILEFDDKGLVDMDFRRVDY 231 (270)
T ss_dssp CCCSSTTGGGCCCEEEEEEEEETTEEEEEEEEEECC
T ss_pred CCCCCccccCCCCCEEEEEEecCCCceEEEEEEeCC
Confidence 421 25689999998774 45554443
No 16
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=99.48 E-value=8.9e-13 Score=108.26 Aligned_cols=85 Identities=12% Similarity=0.005 Sum_probs=58.3
Q ss_pred CeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEeccccccC-----CCCCCc
Q 023422 180 QKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALEC-----PPGTDA 254 (282)
Q Consensus 180 ~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~ 254 (282)
...|+++|.++.... .+.+.+.+++...+ ++++++||+|....... +++.+++.|+.+.. ....++
T Consensus 113 ~~~i~l~Hg~~~~~~-------~~~~~l~~~~~~~~-~d~vl~GHtH~~~~~~~-~~~~~inpGS~~~~~~~~~~~~~~~ 183 (215)
T 2a22_A 113 EFKIGLMHGNQVLPW-------DDPGSLEQWQRRLD-CDILVTGHTHKLRVFEK-NGKLFLNPGTATGAFSALTPDAPPS 183 (215)
T ss_dssp TEEEEEECSTTSSST-------TCHHHHHHHHHHHT-CSEEEECSSCCCEEEEE-TTEEEEECCCSSCCCCTTSTTCCCE
T ss_pred CeEEEEEcCCccCCC-------CCHHHHHHHHhhcC-CCEEEECCcCCCccEee-CCEEEEECCcccccCCCCCCCCCCc
Confidence 356888996553221 23456666666664 88999999999876555 78877777776542 123579
Q ss_pred eEEEEEeCCeEEEEecccc
Q 023422 255 FGHIDAYDDRLSLVGTGRM 273 (282)
Q Consensus 255 f~~v~~~~~~~~~~~~~~~ 273 (282)
|.++++.++.+.++.+...
T Consensus 184 y~il~i~~~~i~~~~~~~~ 202 (215)
T 2a22_A 184 FMLMALQGNKVVLYVYDLR 202 (215)
T ss_dssp EEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEeCCcEEEEEEEec
Confidence 9999999888776655443
No 17
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=99.48 E-value=1.7e-13 Score=110.40 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKISSV 88 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~~~~ 88 (282)
...++++++.+++. ++|+|+++||+++ . .+++.+.+++.|+++|+||||... ..+.+++....
T Consensus 38 ~~~l~~~l~~~~~~-~~D~ii~~GDl~~-----~-------~~~~~l~~l~~~~~~V~GNhD~~~---~~~~~~~~~~~- 100 (190)
T 1s3l_A 38 LPNIRKAIEIFNDE-NVETVIHCGDFVS-----L-------FVIKEFENLNANIIATYGNNDGER---CKLKEWLKDIN- 100 (190)
T ss_dssp HHHHHHHHHHHHHS-CCSEEEECSCCCS-----T-------HHHHHGGGCSSEEEEECCTTCCCH---HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhc-CCCEEEECCCCCC-----H-------HHHHHHHhcCCCEEEEeCCCcchH---HHHHHHhcccC-
Confidence 45778888888777 8999999999985 1 255566666789999999999742 11222221100
Q ss_pred CCCcceEecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCHHHHHHH
Q 023422 89 DGRAYYDFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFNGAVGKEQIKWL 168 (282)
Q Consensus 89 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl 168 (282)
+ .. +. .. + ..+
T Consensus 101 -------~---~~--l~--~~--------~---------------------------------------~~~-------- 111 (190)
T 1s3l_A 101 -------E---EN--II--DD--------F---------------------------------------ISV-------- 111 (190)
T ss_dssp -------T---TC--EE--ES--------E---------------------------------------EEE--------
T ss_pred -------h---hh--hc--cc--------c---------------------------------------eEE--------
Confidence 0 00 00 00 0 000
Q ss_pred HHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEeccccccC
Q 023422 169 DAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALEC 248 (282)
Q Consensus 169 ~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~ 248 (282)
+ .+...|+++|.|+.. +.+.+.+..+++++++||+|....... +++.+++.|+....
T Consensus 112 -------~-~~~~~ill~Hg~~~~--------------l~~~~~~~~~~d~vl~GHtH~~~~~~~-~~~~~iNpGs~~~r 168 (190)
T 1s3l_A 112 -------E-IDDLKFFITHGHHQS--------------VLEMAIKSGLYDVVIYGHTHERVFEEV-DDVLVINPGECCGY 168 (190)
T ss_dssp -------E-ETTEEEEEEESCCHH--------------HHHHHHHHSCCSEEEEECSSCCEEEEE-TTEEEEECCCSSCT
T ss_pred -------e-eCCcEEEEECCChHH--------------HHHHHHhcCCCCEEEECCCCCcceEEE-CCEEEEECCccccc
Confidence 0 234678999987431 233444432378999999999987665 77777787776652
Q ss_pred CCCCCceEEEEEeCCeEEEEe
Q 023422 249 PPGTDAFGHIDAYDDRLSLVG 269 (282)
Q Consensus 249 ~~~~~~f~~v~~~~~~~~~~~ 269 (282)
....++|.++++.++++++..
T Consensus 169 ~~~~~~y~il~~~~~~v~~~~ 189 (190)
T 1s3l_A 169 LTGIPTIGILDTEKKEYREIV 189 (190)
T ss_dssp TTSCCEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEEEcCCCcEEEEe
Confidence 233579999999888877653
No 18
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=99.48 E-value=3.9e-13 Score=114.71 Aligned_cols=173 Identities=14% Similarity=0.061 Sum_probs=96.3
Q ss_pred CCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcC-CCEEEecCCCCCCCCChhhhhhhh------------------
Q 023422 23 QKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFN-GPAYHMIGNHCLYNLPRHMLLPLL------------------ 83 (282)
Q Consensus 23 ~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~-~pv~~v~GNHD~~~~~~~~~~~~l------------------ 83 (282)
+++|+||++||+++ ....+.++.+.+.|++++ .++++|+||||.+. .. .+.+.+
T Consensus 78 ~~~D~vi~aGDl~~-----~g~~~e~~~~~~~L~~l~~~~v~~V~GNHD~~~-d~-~~~~~~~~~~~~~~~~~~~~~~~~ 150 (296)
T 3rl5_A 78 PYGDILLHTGDFTE-----LGLPSEVKKFNDWLGNLPYEYKIVIAGNHELTF-DK-EFMADLVKQDYYRFPSVSKLKPED 150 (296)
T ss_dssp CSCSEEEECSCCSS-----SCCHHHHHHHHHHHHTSCCSEEEECCCTTCGGG-CH-HHHHHHTTSCGGGSHHHHTCCHHH
T ss_pred CCCCEEEECCcccC-----CCCHHHHHHHHHHHHhCCCCeEEEEcCCccccc-ch-hhhhhhhcccccccccccccccch
Confidence 37899999999998 456777888888998886 46999999999852 11 111110
Q ss_pred -cCCC-CCCCcce----EecCCCCeEEEEEcCeeecccCCCCCCcchHHHHHHhhhcCCCCCCCCCCCcccccccccccC
Q 023422 84 -KISS-VDGRAYY----DFSPTPEYRFVVLDGYDISAIGWPHNHPNTLEALKFLGEKNPNTEKNSPAGLVGLERRFLMFN 157 (282)
Q Consensus 84 -~~~~-~~~~~~~----~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (282)
.... ......| .+ ..++++|.+.+. +....+ |
T Consensus 151 ~~~~~~l~~~~~~L~~~~~-~i~Gl~i~Gsp~---tP~~~~-------------------------------------~- 188 (296)
T 3rl5_A 151 FDNVQSLLTNSIYLQDSEV-TVKGFRIYGAPW---TPWFNG-------------------------------------W- 188 (296)
T ss_dssp HTTTGGGCTTSEECSSEEE-EETTEEEEEECC---BCC--C-------------------------------------C-
T ss_pred hhhHhhhcCCeEEecCCcE-EECCEEEEEecC---CCCCCC-------------------------------------c-
Confidence 0000 0001111 11 135666665332 110000 1
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCC-C-CcccccCHHHHHHHH-HccCcEEEEEeCcccCCCccccC
Q 023422 158 GAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSA-S-PEALLWNCNEVMDVI-HRYNCVKVCLAGHDHQGGHSIDT 234 (282)
Q Consensus 158 ~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~-~-~~~~~~~~~~~~~~l-~~~~~v~~~~~GH~H~~~~~~~~ 234 (282)
.+..++.+++.+..... +....|+++|.||+.... . ....-...+.+.+.+ .+.+ +++++|||+|........
T Consensus 189 -~f~~~~~~~~~~~~~~i--p~~~dILvTH~PP~g~~D~~~~~~~~~G~~~L~~~i~~~~~-p~l~v~GH~H~~~~~~~~ 264 (296)
T 3rl5_A 189 -GFNLPRGQSLLDKWNLI--PEGTDILMTHGPPLGFRDWVPKELQRVGCVELLNTVQRRVR-PKLHVFGGIHEGYGTMTD 264 (296)
T ss_dssp -TTBCCTTHHHHHHHTTS--CTTCSEEEESSCBTTSSCEEGGGTEECSBHHHHHHHHHTTC-CSEEEECSCGGGCEEEEC
T ss_pred -CCCcchHHHHHHHHhhC--CCCCeEEEECCCccccccccccccCcCChHHHHHHHHHhcC-CCEEEECCccCCCceEEE
Confidence 11111112222222222 345679999999986542 1 011123446777777 4664 889999999998654433
Q ss_pred CCCeEEeccccccC
Q 023422 235 HGIHHRVLEAALEC 248 (282)
Q Consensus 235 ~~i~~~~~~~~~~~ 248 (282)
+++.+++.++....
T Consensus 265 g~t~vvNpGs~~~~ 278 (296)
T 3rl5_A 265 GYTTYINASTCTVS 278 (296)
T ss_dssp SSCEEEECBCSCTT
T ss_pred CCEEEEECCcCCcC
Confidence 67777776666543
No 19
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=99.48 E-value=7.4e-13 Score=106.80 Aligned_cols=83 Identities=10% Similarity=-0.072 Sum_probs=55.7
Q ss_pred eEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEeccccccCC-----CCCCce
Q 023422 181 KVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECP-----PGTDAF 255 (282)
Q Consensus 181 ~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~f 255 (282)
..|+++|.++.... .+.+++.+++...+ ++++++||+|....... +++.+++.|+.+... ...++|
T Consensus 90 ~~i~l~Hg~~~~~~-------~~~~~l~~~~~~~~-~d~vi~GHtH~~~~~~~-~~~~~inpGS~~~~~~~~~~~~~~~y 160 (192)
T 1z2w_A 90 FKIGLIHGHQVIPW-------GDMASLALLQRQFD-VDILISGHTHKFEAFEH-ENKFYINPGSATGAYNALETNIIPSF 160 (192)
T ss_dssp EEEEEECSCCCCBT-------TCHHHHHHHHHHHS-SSEEECCSSCCCEEEEE-TTEEEEECCCTTCCCCSSCSCCCCEE
T ss_pred EEEEEECCCcCCCC-------CCHHHHHHHHHhcC-CCEEEECCcCcCccEeE-CCEEEEECCcccccCCCCCcCCCCcE
Confidence 45777785543211 23355666665554 78999999999876555 788778877765421 235799
Q ss_pred EEEEEeCCeEEEEeccc
Q 023422 256 GHIDAYDDRLSLVGTGR 272 (282)
Q Consensus 256 ~~v~~~~~~~~~~~~~~ 272 (282)
.++++.++++.++.+..
T Consensus 161 ~il~~~~~~~~~~~~~~ 177 (192)
T 1z2w_A 161 VLMDIQASTVVTYVYQL 177 (192)
T ss_dssp EEEEEETTEEEEEEEEE
T ss_pred EEEEEECCEEEEEEEEc
Confidence 99999988877665443
No 20
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis}
Probab=99.46 E-value=3.4e-12 Score=118.03 Aligned_cols=188 Identities=19% Similarity=0.202 Sum_probs=107.3
Q ss_pred HHHHHhhcCCccEEEEcCCCCCCC--CC--------------CcccHHHHHHHHHH------HHhc--CCCEEEecCCCC
Q 023422 15 AVQRWNNHQKLKFVIHFGDIVDGF--CP--------------KDQSLEAVKKVVNE------FEKF--NGPAYHMIGNHC 70 (282)
Q Consensus 15 ~~~~~~~~~~~d~vi~~GDi~d~~--~~--------------~~~~~~~~~~~~~~------l~~~--~~pv~~v~GNHD 70 (282)
+++.+.+. ++|+||++||++-.+ .. +..+...+....+. ++.+ .+|+++++||||
T Consensus 134 ~~~~ia~~-~~D~vlhlGD~iY~d~~~~~~~~~~~~R~~~~~e~~tl~~yr~~y~~~~~dp~lq~~~a~~P~i~~wDDHE 212 (527)
T 2yeq_A 134 AYKHMAKE-KLDLVFHLGDYIYEYGPNEYVSKTGNVRTHNSAEIITLQDYRNRHAQYRSDANLKAAHAAFPWVVTWDDHE 212 (527)
T ss_dssp HHHHHTTS-CCSEEEECSCSSCCCCTTSSCCTTCCCSCCSSSSCCSHHHHHHHHHHHHTCHHHHHHHHHSEEEECCCSTT
T ss_pred HHHHHHhc-CCCEEEecCCcccCCCCCcccccccccccCCcccccCHHHHHHHHHHHhCCHHHHHHHhcCCEEEeccccc
Confidence 45556666 899999999999322 11 11123333332221 2221 279999999999
Q ss_pred CCCCChh----------hh--------h---hhhcCC-----C-CCCCcceEecCCCC-eEEEEEcCeeecccCCCCCCc
Q 023422 71 LYNLPRH----------ML--------L---PLLKIS-----S-VDGRAYYDFSPTPE-YRFVVLDGYDISAIGWPHNHP 122 (282)
Q Consensus 71 ~~~~~~~----------~~--------~---~~l~~~-----~-~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~~~~~~~ 122 (282)
+.+.... .+ . +++... . .....||+|. .|. ++|++||+..+ ....
T Consensus 213 ~~nn~~~~~~~~~~~~~~f~~rr~~A~~ay~e~~P~~~~~~p~~~~~~~y~sf~-~G~lv~~i~LDtR~y---r~~~--- 285 (527)
T 2yeq_A 213 VENNYANKIPEKGQSVEAFVLRRAAAYQAYYEHMPLRISSLPNGPDMQLYRHFT-YGNLASFNVLDTRQY---RDDQ--- 285 (527)
T ss_dssp TSTTCBTTBCSTTCCHHHHHHHHHHHHHHHHHHSCCCGGGCCBTTBCCCCEEEE-ETTTEEEEECCSSSS---CCCC---
T ss_pred ccCCCCCCcccccCCcccHHHHHHHHHHHHHHhCCCCcccCCCCCCceEEEEEE-cCCcceEEEEecccc---cccc---
Confidence 9532110 01 1 112211 1 1235688887 777 89999999422 1110
Q ss_pred chHHHHHHhhhcCCCCC-CCCCCCcccccccccccCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCC--C---
Q 023422 123 NTLEALKFLGEKNPNTE-KNSPAGLVGLERRFLMFNGAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSA--S--- 196 (282)
Q Consensus 123 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~--~--- 196 (282)
.+. +.....+. ... .-...++++|++||++.|.+. ...+.||++|+|+..... .
T Consensus 286 ~~~------~~~~~~~~~~~~------------~~~~~lG~~Q~~WL~~~L~~s--~a~W~Iv~s~~p~~~~~~~~g~~~ 345 (527)
T 2yeq_A 286 ANN------DGNKPPSDESRN------------PNRTLLGKEQEQWLFNNLGSS--TAHWNVLAQQIFFAKWNFGTSASP 345 (527)
T ss_dssp GGG------SSEECCCHHHHC------------TTCCSSCHHHHHHHHHHHHHC--CSSEEEEECSSCCSCCCSSCSSSC
T ss_pred ccc------cccccccccccC------------CcccccCHHHHHHHHHHHhcC--CCCeEEEEeCCcccccccCCCccc
Confidence 000 00000000 000 011467899999999999985 456889999999876432 0
Q ss_pred ----Cc--ccccCHHHHHHHHHccCcE--EEEEeCcccCCCcc
Q 023422 197 ----PE--ALLWNCNEVMDVIHRYNCV--KVCLAGHDHQGGHS 231 (282)
Q Consensus 197 ----~~--~~~~~~~~~~~~l~~~~~v--~~~~~GH~H~~~~~ 231 (282)
+. ......+++.++|.+++ | .++|+||.|.....
T Consensus 346 ~~~~D~W~g~~~~R~~Ll~~l~~~~-v~n~vvLsGDvH~~~~~ 387 (527)
T 2yeq_A 346 IYSMDSWDGYPAQRERVINFIKSKN-LNNVVVLTGDVHASWAS 387 (527)
T ss_dssp CEETTSGGGSHHHHHHHHHHHHHTT-CCCEEEEECSSSSEEEE
T ss_pred ccCccchhccHHHHHHHHHHHHHhC-CCCEEEEEcchHHHhHh
Confidence 00 11123467888898885 6 59999999988653
No 21
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=99.45 E-value=2.2e-12 Score=115.57 Aligned_cols=93 Identities=5% Similarity=0.006 Sum_probs=59.3
Q ss_pred CCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCcccc---CCCCeEEeccccccCC-----
Q 023422 178 LNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSID---THGIHHRVLEAALECP----- 249 (282)
Q Consensus 178 ~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~---~~~i~~~~~~~~~~~~----- 249 (282)
.+...|+++|........ ...+. ..+... .+++|++||+|..+.... .++...++.||+....
T Consensus 228 ~~~~~Ilv~H~~~~~~g~--~~~ip------~~l~~~-~~Dyv~lGH~H~~~~~~~~~~~~~~~i~yPGS~~~~s~~e~E 298 (431)
T 3t1i_A 228 NSWFNLFVIHQNRSKHGS--TNFIP------EQFLDD-FIDLVIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGE 298 (431)
T ss_dssp GGEEEEEEECSCCSCSSS--SSSCC------GGGSCT-TCCEEEECSCCSCEEEEEECTTTCCEEEECCCSSCCSCCHHH
T ss_pred CCceEEEEECCCccCCCc--cccCC------HhHhhC-CCCEEEecccccccccccccCCCCEEEEeCCCCcccCcCccc
Confidence 345789999997643211 01111 122333 378999999999876431 1455556666665531
Q ss_pred CCCCceEEEEEeCCeEEEEecccccCcccc
Q 023422 250 PGTDAFGHIDAYDDRLSLVGTGRMQSTDMC 279 (282)
Q Consensus 250 ~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~ 279 (282)
...++|.++++.++.+.++-..-.+.|.+.
T Consensus 299 ~~~k~~~lvei~~~~~~ve~i~l~~~R~f~ 328 (431)
T 3t1i_A 299 AVKKHVGLLRIKGRKMNMHKIPLHTVRQFF 328 (431)
T ss_dssp HSCCEEEEEEEETTEEEEEEEECSSSCCEE
T ss_pred CCCCEEEEEEEECCEEEEEEEECCCcceEE
Confidence 245699999999998888877777666543
No 22
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=99.44 E-value=5.8e-13 Score=118.86 Aligned_cols=92 Identities=10% Similarity=0.022 Sum_probs=59.7
Q ss_pred CCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccc---cCCCCeEEeccccccCC-----
Q 023422 178 LNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSI---DTHGIHHRVLEAALECP----- 249 (282)
Q Consensus 178 ~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~---~~~~i~~~~~~~~~~~~----- 249 (282)
.+...|++.|........ ...+. ..+... .+++|++||+|...... ..+++..++.||+....
T Consensus 209 ~~~~nIlvlH~~~~~~~~--~~yip------~~l~~~-~~DyvalGH~H~~~~~~~~~~~~g~~i~~PGS~~~~s~~e~E 279 (417)
T 4fbw_A 209 DEWFNLLTVHQNHSAHTP--TSYLP------ESFIQD-FYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGE 279 (417)
T ss_dssp TTSEEEEEEESCSSCSSS--SSSCC------GGGSCT-TCSEEEEESCCSCEEEEEEETTTTEEEEECCCSSCSSCCHHH
T ss_pred CCceEEEEecCCccCCCC--cccCc------hhHhhc-CCCEEEecCccccceeccccCCCCEEEEECCCCCcCCCcccc
Confidence 456789999997654421 11111 123344 38999999999997653 12455555556654432
Q ss_pred CCCCceEEEEEeCCeEEEEecccccCccc
Q 023422 250 PGTDAFGHIDAYDDRLSLVGTGRMQSTDM 278 (282)
Q Consensus 250 ~~~~~f~~v~~~~~~~~~~~~~~~~~~~~ 278 (282)
...++|.++++.++.+.++-..-.+.|.+
T Consensus 280 ~~~kg~~lvei~~~~~~~e~i~l~~~Rpf 308 (417)
T 4fbw_A 280 TAPKHCGILNITGKDFHLEKIRLRTVRPF 308 (417)
T ss_dssp HSCCEEEEEEEETTEEEEEEEECSSSCCE
T ss_pred CCCCEEEEEEEECCEEEEEEEECCCcccE
Confidence 14679999999999888887777666654
No 23
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=99.39 E-value=6.1e-12 Score=113.20 Aligned_cols=91 Identities=10% Similarity=0.041 Sum_probs=57.8
Q ss_pred CCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCcccc---CCCCeEEeccccccCC-----C
Q 023422 179 NQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSID---THGIHHRVLEAALECP-----P 250 (282)
Q Consensus 179 ~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~---~~~i~~~~~~~~~~~~-----~ 250 (282)
+...|++.|........ ...+. ..+... .+++|++||+|....... .+++..++.||+.... .
T Consensus 273 ~~~nIlvlH~~~~~~~~--~~yip------e~ll~~-g~DyValGH~H~~~~~~~~~~~~g~~ivyPGS~~~~s~~e~E~ 343 (472)
T 4fbk_A 273 EWFNLLTVHQNHSAHTP--TSYLP------ESFIQD-FYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGET 343 (472)
T ss_dssp GEEEEEEEESCSCCSST--TSSCC------GGGSCT-TCSEEEEESCCSCEEEEEEETTTTEEEEECCCSSCSSCCGGGC
T ss_pred CceEEEEecCCccCCCc--cccCC------hhhhhc-CCCEEEecCcccceeeecccCCCCeEEEECCCccccccCccCC
Confidence 45789999988654321 01111 113333 388999999999976431 2455556666654331 2
Q ss_pred CCCceEEEEEeCCeEEEEecccccCccc
Q 023422 251 GTDAFGHIDAYDDRLSLVGTGRMQSTDM 278 (282)
Q Consensus 251 ~~~~f~~v~~~~~~~~~~~~~~~~~~~~ 278 (282)
..++|.++++.++.+.++-..-.+-|.+
T Consensus 344 ~~kg~~lveI~~~~v~ve~I~L~t~Rpf 371 (472)
T 4fbk_A 344 APKHCGILNITGKDFHLEKIRLRTVRPF 371 (472)
T ss_dssp SCCEEEEEEEETTEEEEEEEECSSSCCE
T ss_pred CCCEEEEEEEECCEEEEEEEECCCcccE
Confidence 4679999999999888877766665544
No 24
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=99.39 E-value=5.1e-13 Score=111.95 Aligned_cols=109 Identities=10% Similarity=0.074 Sum_probs=70.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccc-----
Q 023422 158 GAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSI----- 232 (282)
Q Consensus 158 ~~~~~~~~~wl~~~l~~~~~~~~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~----- 232 (282)
..+++++++||........ ...++++|.+|..... ..+.+...+.+.+...+ ++++||||||......
T Consensus 91 ~~l~~~~~~~L~~lp~~~~---~~~i~~~Hg~p~~~~~---~~~~~~~~~~~~l~~~~-~~l~i~GHtH~p~~~~~~~~~ 163 (246)
T 3rqz_A 91 MQLQAEHLQYLESLPNRMI---DGDWTVVHGSPRHPIW---EYIYNARIAALNFPAFD-TPLCFVGHTHVPLYIREDEAL 163 (246)
T ss_dssp HHCCHHHHHHHHHCCSEEE---ETTEEEESSCSSSTTT---CCCCSHHHHHHHGGGCC-SSEEECCSSSSEEEEEHHHHH
T ss_pred HHcCHHHHHHHHhCCcEEE---ECCEEEEECCcCCccc---cccCChHHHHHHHhccC-CCEEEECCcCcccEEEecccc
Confidence 4577889999986433221 1247889988764321 12234567788888885 8999999999875433
Q ss_pred ---------------cCCCCeEEeccccccCC--CCCCceEEEEEeCCeEEEEecccc
Q 023422 233 ---------------DTHGIHHRVLEAALECP--PGTDAFGHIDAYDDRLSLVGTGRM 273 (282)
Q Consensus 233 ---------------~~~~i~~~~~~~~~~~~--~~~~~f~~v~~~~~~~~~~~~~~~ 273 (282)
...+..+++.||.+... ....+|.+++...+.+.++...+.
T Consensus 164 ~~~~~~~~~~~~~~~l~~g~~ivNpGSVG~Prdg~p~A~Y~i~d~~~~~v~~~rv~Yd 221 (246)
T 3rqz_A 164 SNVAPHHPNDGEVLDVSSGRYIINPGAVGQPRDGDPRASYAIFEPDAQRVTFHRVEYR 221 (246)
T ss_dssp TTCCCBCCCTTCEEECSSSCEEEEECCSSCCCSSCCSEEEEEEEGGGTEEEEEEECCC
T ss_pred cccccccccccceeecCCCeEEEECCccCCCCCcCCcceEEEEECCCCEEEEEEeCCC
Confidence 12355555555553322 234579999998888887766554
No 25
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=99.38 E-value=1.4e-11 Score=107.86 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
...++++++.+++. ++|+||++||++|+..+.......+..+++.+...++|+++++||||..
T Consensus 26 ~~~~~~~~~~~~~~-~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~~v~GNHD~~ 88 (333)
T 1ii7_A 26 AEAFKNALEIAVQE-NVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNHDRT 88 (333)
T ss_dssp HHHHHHHHHHHHHT-TCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEEECCTTTCC
T ss_pred HHHHHHHHHHHHhc-CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEeCCcCCCc
Confidence 45677888888887 8999999999998543322233344445555555578999999999985
No 26
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=99.34 E-value=3.1e-11 Score=95.83 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=56.8
Q ss_pred eEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEeccccccCC-CC-CCceEEE
Q 023422 181 KVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECP-PG-TDAFGHI 258 (282)
Q Consensus 181 ~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~~-~~-~~~f~~v 258 (282)
..|+++|.++.... .+.+++.+.+...+ ++++++||+|....... +++.+++.|+..... .. .++|.++
T Consensus 78 ~~i~~~Hg~~~~~~-------~~~~~l~~~~~~~~-~d~vi~GHtH~~~~~~~-~~~~~inpGs~~~~~~~~~~~~y~il 148 (176)
T 3ck2_A 78 TKIIQTHGHLFDIN-------FNFQKLDYWAQEEE-AAICLYGHLHVPSAWLE-GKILFLNPGSISQPRGTIRECLYARV 148 (176)
T ss_dssp EEEEEECSGGGTTT-------TCSHHHHHHHHHTT-CSEEECCSSCCEEEEEE-TTEEEEEECCSSSCCTTCCSCCEEEE
T ss_pred eEEEEECCCccCCC-------CCHHHHHHHHHhcC-CCEEEECCcCCCCcEEE-CCEEEEECCCCCcCCCCCCCCeEEEE
Confidence 45778888765322 23356777777774 89999999999877555 777777777655332 22 3799999
Q ss_pred EEeCCeEEEEecc
Q 023422 259 DAYDDRLSLVGTG 271 (282)
Q Consensus 259 ~~~~~~~~~~~~~ 271 (282)
++.++.+.++-..
T Consensus 149 ~~~~~~~~v~~~~ 161 (176)
T 3ck2_A 149 EIDDSYFKVDFLT 161 (176)
T ss_dssp EECSSEEEEEEEC
T ss_pred EEcCCEEEEEEEE
Confidence 9998876655443
No 27
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=99.30 E-value=1.1e-11 Score=100.17 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=42.4
Q ss_pred CeEEEEEeeCCCCCCCCCcccccCHHHHHHHHHccCcEEEEEeCcccCCCccccC---C-CCeEEeccccc
Q 023422 180 QKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDT---H-GIHHRVLEAAL 246 (282)
Q Consensus 180 ~~~il~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~---~-~i~~~~~~~~~ 246 (282)
...|+++|.|+...... ....+.+++.+++.+.+ ++++++||+|........ + ++.++++++..
T Consensus 106 ~~~i~~~H~~~~~~~~~--~~~~~~~~l~~~~~~~~-~~~vi~GHtH~~~~~~~~g~~~~g~~~~nvg~~~ 173 (195)
T 1xm7_A 106 GKRILLSHYPAKDPITE--RYPDRQEMVREIYFKEN-CDLLIHGHVHWNREGIKCACKDYRIECINANVEW 173 (195)
T ss_dssp TEEEEEESSCSSCSSCC--SCHHHHHHHHHHHHHTT-CSEEEECCCCCCSCC--CCTTSSSCCEEECBGGG
T ss_pred CcEEEEEccCCcCCCcc--cccchHHHHHHHHHHcC-CcEEEECCcCCCCcccccccccCCcceEEEeEec
Confidence 46789999997654311 11123467888888885 899999999998765441 2 67777766544
No 28
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=99.27 E-value=1.8e-11 Score=97.42 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=37.6
Q ss_pred cEEEEEeCcccCCCccccCCCCeEEeccccccCCCCCCceEEEEEeCCeEEEEe
Q 023422 216 CVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECPPGTDAFGHIDAYDDRLSLVG 269 (282)
Q Consensus 216 ~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~ 269 (282)
+++++++||+|....... +++.+++.|+... ++|.++++.++.+.++-
T Consensus 128 ~~d~vi~GHtH~~~~~~~-~~~~~iNpGS~~~-----~sy~il~~~~~~~~~~~ 175 (178)
T 2kkn_A 128 KPQVILFGHTHEPEDTVK-AGVRFLNPGSLAE-----GSYAVLELDGGEVRFEL 175 (178)
T ss_dssp CCSEEECCSCSSCCEEEE-TTEEEECCCCTTT-----TEEEEEEEETTEEEEEE
T ss_pred CCCEEEECccCCCCeEEe-CCEEEEECCCCCC-----CeEEEEEECCCEEEEEE
Confidence 478999999999987655 7776676666543 69999999998877653
No 29
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=99.26 E-value=1.1e-10 Score=95.15 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHH-HHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLE-AVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~-~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
.+.++++++.+++. ++|.|+++||+++.......... ....+++.+++++.|+++|+||||.
T Consensus 38 ~~~l~~~l~~~~~~-~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~ 100 (208)
T 1su1_A 38 LPATERVLELFAQS-GAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCDS 100 (208)
T ss_dssp HHHHHHHHHHHHHH-TCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTTGGGEEECCCTTCC
T ss_pred HHHHHHHHHHHHhc-CCCEEEECCCccccCcccccccccCHHHHHHHHHhcCCceEEEECCCch
Confidence 45678888888777 89999999999973221110000 1245666677766799999999997
No 30
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=98.76 E-value=2.8e-10 Score=93.62 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
...|.++++.+...+++|.+|++||+++.. ..+. .+++.+.. .++++|.||||.
T Consensus 25 ~~~l~~~l~~~~~~~~~d~~i~~GD~~~~g---~~~~----~~~~~l~~--~~~~~v~GNhd~ 78 (221)
T 1g5b_A 25 YTNLMNKLDTIGFDNKKDLLISVGDLVDRG---AENV----ECLELITF--PWFRAVRGNHEQ 78 (221)
T ss_dssp HHHHHHHHHHHTCCTTTCEEEECSCCSSSS---SCHH----HHHGGGGS--TTEEECCCHHHH
T ss_pred HHHHHHHHHHccCCCCCCEEEEeCCccCCC---CChH----HHHHHHhc--CCEEEEccCcHH
Confidence 456778888776543689999999999732 1112 23333333 489999999996
No 31
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*
Probab=98.62 E-value=1.4e-06 Score=80.28 Aligned_cols=70 Identities=19% Similarity=0.096 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCCccEEEE-cCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhh
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIH-FGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLL 83 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~-~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l 83 (282)
+.++..+++.+.++ .++.+++ +||+++|. .. ......+.+.+.+..++ +-++++||||+. .....+.+++
T Consensus 37 ~a~la~~i~~~r~~-~~~~llldaGD~~~g~-~~-~~~~~g~~~~~~ln~lg-~D~~tlGNHEfd-~G~~~l~~~l 107 (509)
T 3ive_A 37 WANITTLVKQEKAK-NKATWFFDAGDYFTGP-YI-SSLTKGKAIIDIMNTMP-FDAVTIGNHEFD-HGWDNTLLQL 107 (509)
T ss_dssp HHHHHHHHHHHHHH-CSSEEEEECSCCSSSS-HH-HHTTTTHHHHHHHTTSC-CSEECCCGGGGT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCeEEEECCCCCCCc-hh-hhhcCChHHHHHHHhcC-CcEEeecccccc-cCHHHHHHHH
Confidence 67889999998888 7787766 99999752 00 00001134556666664 446678999974 3333444443
No 32
>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}
Probab=98.61 E-value=5.5e-07 Score=83.35 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhcCCcc-EEEEcCCCCCCCCCCcccHHH-------HHHHHHHHHhcCCCEEEecCCCCCCCCChhhhh
Q 023422 9 LLVLQNAVQRWNNHQKLK-FVIHFGDIVDGFCPKDQSLEA-------VKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLL 80 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d-~vi~~GDi~d~~~~~~~~~~~-------~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~ 80 (282)
+.++..+++.+.++ .++ +++.+||+++|. ..... ...+.+.+..++.. ++++||||+. ...+.+.
T Consensus 48 ~a~l~~~i~~~r~~-~~~~l~l~~GD~~~gs----~~~~~~~~~~~~~~~~~~~ln~lg~D-~~t~GNHefd-~G~~~l~ 120 (527)
T 3qfk_A 48 LLLANHVIEQDRRQ-YDQSFKIDNGDFLQGS----PFCNYLIAHSGSSQPLVDFYNRMAFD-FGTLGNHEFN-YGLPYLK 120 (527)
T ss_dssp HHHHHHHHHHHHTT-SSEEEEEECSCCSSSS----HHHHHHHHTTCSSHHHHHHHHHTCCC-EECCCGGGGT-TCHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCEEEEECCCcCCCc----HHHHHHhhcccCcchHHHHHHhcCCc-EEeccccccc-cCHHHHH
Confidence 66888999998887 565 677899999742 11111 14567777777544 5679999973 3333444
Q ss_pred hh
Q 023422 81 PL 82 (282)
Q Consensus 81 ~~ 82 (282)
++
T Consensus 121 ~~ 122 (527)
T 3qfk_A 121 DT 122 (527)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 33
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2
Probab=98.59 E-value=6.7e-07 Score=83.22 Aligned_cols=71 Identities=13% Similarity=0.011 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhhcCCcc-EEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhh
Q 023422 8 SLLVLQNAVQRWNNHQKLK-FVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLL 83 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d-~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l 83 (282)
.+..+..+++.+.++ .++ +++.+||+++|.. . ........+.+.+..++ +.++++||||+.. ..+.+.+++
T Consensus 58 g~~~~~~~v~~~r~~-~~~~l~l~~GD~~~gs~-~-~~~~~~~~~~~~ln~lg-~d~~~lGNHEfd~-g~~~l~~~l 129 (552)
T 2z1a_A 58 GVARRVALFDRVWAR-AKNPLFLDAGDVFQGTL-Y-FNQYRGLADRYFMHRLR-YRAMALGNHEFDL-GPGPLADFL 129 (552)
T ss_dssp CHHHHHHHHHHHHHH-SSSEEEEECSCCSSSSH-H-HHHHTTHHHHHHHHHTT-CCEEECCGGGGTT-CHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh-CCCEEEEeCCCCCCCcH-H-HHHhCCcHHHHHHHhcC-CCccccccccccC-CHHHHHHHH
Confidence 457888999999887 677 8899999997520 0 00011234556666664 4477899999853 333444444
No 34
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Probab=98.56 E-value=2.7e-06 Score=78.57 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhcC---Cc-cEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQ---KL-KFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~---~~-d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
+..+..+++.+.++. .+ ++++.+||+++|. +.. .....+.+.+.++.++ +.++++||||+.
T Consensus 31 ~~~~~~~v~~~r~~~~~~~~~~lvl~~GD~~~g~-~~~-~~~~~~~~~~~ln~lg-~d~~~~GNHEfd 95 (516)
T 1hp1_A 31 LAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGV-PES-DLQDAEPDFRGMNLVG-YDAMAIGNHEFD 95 (516)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEECSCCSSSC-HHH-HTTTTHHHHHHHHHHT-CCEEECCGGGGS
T ss_pred HHHHHHHHHHHHHhhhccCCCEEEEeCCccCCCc-chh-hhcCCcHHHHHHhccC-CCEEeecccccc
Confidence 456677777665431 34 7999999999742 000 0001123455566665 457889999984
No 35
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A
Probab=98.50 E-value=4.1e-06 Score=78.01 Aligned_cols=57 Identities=14% Similarity=0.009 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhc--C-Ccc-EEEEcCCCCCCCCCCcccHHH---HHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 9 LLVLQNAVQRWNNH--Q-KLK-FVIHFGDIVDGFCPKDQSLEA---VKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~--~-~~d-~vi~~GDi~d~~~~~~~~~~~---~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
+.++..+++.++++ . .++ +++.+||+++|. . ... .+.+.+.++.++.+++ + ||||+.
T Consensus 104 ~arla~~v~~~r~~~~~~gpd~Lll~~GD~~~gs----~-~~~~~~g~~~~~~ln~lg~d~~-~-GNHEfd 167 (562)
T 2wdc_A 104 MGALTALIRDQKARVEAEGGKALVLDGGDTWTNS----G-LSLLTRGEAVVRWQNLVGVDHM-V-SHWEWT 167 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCCSSSS----H-HHHHHTTHHHHHHHHHHTCCEE-C-CSGGGG
T ss_pred HHHHHHHHHHHHhhhhcCCCCEEEEeCCCCCCcc----h-hhhhhCCHHHHHHHHhhCCcEE-e-cchhcc
Confidence 55777888877753 1 378 899999999752 1 111 1356677777777875 6 999983
No 36
>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*
Probab=98.27 E-value=1e-05 Score=75.17 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhcCCc-cEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKL-KFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~-d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
.+.++..+++.+.++ .+ ++++.+||+++|... .+...-..+.+.++.++.. ++++||||+.
T Consensus 57 G~a~l~~~i~~~r~~-~~~~l~l~~GD~~~g~~~--~~~~~g~~~~~~ln~lg~d-~~~~GNHEfd 118 (546)
T 4h2g_A 57 GVARLFTKVQQIRRA-EPNVLLLDAGDQYQGTIW--FTVYKGAEVAHFMNALRYD-AMALGNHEFD 118 (546)
T ss_dssp CHHHHHHHHHHHHHH-CSSEEEEECSCCSSSSHH--HHHHTTHHHHHHHHHHTCS-EEECCGGGGT
T ss_pred CHHHHHHHHHHHHhh-CCCEEEEECCccCCCchh--hhhhCChHHHHHHHhcCCc-EEeccCcccc
Confidence 367889999999887 55 689999999975200 0011123456667776555 5789999984
No 37
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A*
Probab=98.26 E-value=1.3e-05 Score=74.86 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcCCcc-EEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhh
Q 023422 9 LLVLQNAVQRWNNHQKLK-FVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLL 83 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d-~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l 83 (282)
+.++..+++.+.++ .++ +++.+||+++|. +.. ....-+...+.+..++.. ++++||||+. ...+.+.+++
T Consensus 46 ~arla~~i~~~r~~-~~~~l~l~~GD~~~gs-~~~-~~~~g~~~~~~ln~lg~D-~~tlGNHEfd-~G~~~l~~~~ 116 (579)
T 3ztv_A 46 FSAVNAKLNKLRKK-YKNPLVLHAGDAITGT-LYF-TLFGGSADAAVMNAGNFH-YFTLGNHEFD-AGNEGLLKLL 116 (579)
T ss_dssp HHHHHHHHHHHHHH-SSSEEEEECSCCSCSS-HHH-HTTTTHHHHHHHHHHTCS-EEECCSGGGT-THHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-CCCEEEEeCCCCCCCc-eee-eecCCHHHHHHHHhcCcC-eeeccccccc-cCHHHHHHHH
Confidence 77889999999887 555 889999999752 000 000012345666666544 4678999984 2333444443
No 38
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=98.03 E-value=3.4e-05 Score=67.16 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhcCCc-cEEEEcCCCCCCCCCCcccHH-HH-----------HHHHHHHHhcCCCEEEecCCCCCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKL-KFVIHFGDIVDGFCPKDQSLE-AV-----------KKVVNEFEKFNGPAYHMIGNHCLYNL 74 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~-d~vi~~GDi~d~~~~~~~~~~-~~-----------~~~~~~l~~~~~pv~~v~GNHD~~~~ 74 (282)
.+.++..+++.+.++ .+ .+++.+||++.| +.- .+ ..+.+.+..++..+ +++||||+. .
T Consensus 36 G~ar~at~i~~~r~~-~~n~llld~GD~~qG------s~~~~~~~~~~~~~g~~~p~~~~mn~lg~D~-~t~GNHEfd-~ 106 (339)
T 3jyf_A 36 GLVRTASLIEQARAE-VKNSVLVDNGDVIQG------SPLGDYMAAKGLKEGDVHPVYKAMNTLNYAV-GNLGNHEFN-Y 106 (339)
T ss_dssp CHHHHHHHHHHHHHT-CSCEEEEECSCCSSS------SHHHHHHHHHCCCTTCCCHHHHHHTTSCCSE-EECCGGGGT-T
T ss_pred CHHHHHHHHHHHHhh-CCCEEEEECCCCCCC------chhHHhhhhcccccccchHHHHHHHhcCCCE-Eecchhhhh-c
Confidence 467888999998877 45 477899999974 211 11 13456666665444 567999984 3
Q ss_pred Chhhhhhhh
Q 023422 75 PRHMLLPLL 83 (282)
Q Consensus 75 ~~~~~~~~l 83 (282)
..+.+.+++
T Consensus 107 G~~~l~~~~ 115 (339)
T 3jyf_A 107 GLDFLHKAL 115 (339)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 333444333
No 39
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=97.95 E-value=0.00013 Score=63.49 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhcCCc-cEEEEcCCCCCCCCCCcccHHHH-----------HHHHHHHHhcCCCEEEecCCCCCCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKL-KFVIHFGDIVDGFCPKDQSLEAV-----------KKVVNEFEKFNGPAYHMIGNHCLYNLP 75 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~-d~vi~~GDi~d~~~~~~~~~~~~-----------~~~~~~l~~~~~pv~~v~GNHD~~~~~ 75 (282)
.+.++..+++.+.++ .+ .+++.+||++.|. +........ ..+.+.+..++.-+ +++||||+.. .
T Consensus 39 G~ar~at~i~~~r~~-~~~~llld~GD~~qGs-~~~~~~~~~~~~~g~~~g~~~~~~~~ln~lg~Da-~tlGNHEfd~-G 114 (341)
T 3gve_A 39 GLARTAQLIQKHREQ-NPNTLLVDNGDLIQGN-PLGEYAVKYQKDDIISGTKTHPIISVMNALKYDA-GTLGNHEFNY-G 114 (341)
T ss_dssp CHHHHHHHHHHHHHH-CSSEEEEECSCCSCSS-HHHHHHHHHHHHHHHHTSSCCHHHHHHHHTTCCB-EECCGGGGTT-C
T ss_pred CHHHHHHHHHHHHhc-CCCEEEEecCccCCCc-HHHHHhhhcccccccccccccHHHHHHHhhCCCe-eeccchhhcc-C
Confidence 467888899988877 44 4678899999742 100000000 13556666665444 5789999843 3
Q ss_pred hhhhhhhh
Q 023422 76 RHMLLPLL 83 (282)
Q Consensus 76 ~~~~~~~l 83 (282)
.+.+.+++
T Consensus 115 ~~~L~~~~ 122 (341)
T 3gve_A 115 LDFLDGTI 122 (341)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 40
>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Probab=97.90 E-value=0.00037 Score=58.75 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYN 73 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~ 73 (282)
...+...++.+.++.++|++++.||.+.+..+. + ....+.+..++.-++. .|||++..
T Consensus 19 ~~~l~~~l~~lr~~~~~d~vi~Ngen~~gG~g~--~----~~~~~~ln~~G~Da~T-lGNHefD~ 76 (281)
T 1t71_A 19 RNIIKNNLAQLKSKYQADLVIVNAENTTHGKGL--S----LKHYEFLKEAGVNYIT-MGNHTWFQ 76 (281)
T ss_dssp HHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSC--C----HHHHHHHHHHTCCEEE-CCTTTTCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCc--C----HHHHHHHHhcCCCEEE-EccCcccC
Confidence 345666677776542579999999998644222 1 2455666667666654 49999953
No 41
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9
Probab=97.79 E-value=0.00076 Score=56.01 Aligned_cols=56 Identities=20% Similarity=0.134 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYN 73 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~ 73 (282)
...+...++.+.++ . |++++.|+...+..+. . ....+.+..++.-++.+ |||++..
T Consensus 15 ~~~~~~~l~~lr~~-~-d~vi~nge~~~~G~g~--~----~~~~~~l~~~G~Da~Tl-GNHefD~ 70 (255)
T 1t70_A 15 RRVLQNHLPTIRPQ-F-DFVIVNMENSAGGFGM--H----RDAARGALEAGAGCLTL-GNHAWHH 70 (255)
T ss_dssp HHHHHHHHHHHGGG-C-SEEEEECTBTTTTSSC--C----HHHHHHHHHHTCSEEEC-CTTTTSS
T ss_pred HHHHHHHHHHHHhh-C-CEEEECCCCccCCcCC--C----HHHHHHHHhCCCCEEEe-ccccccC
Confidence 45677788888777 5 9998888887543222 1 24456677776676655 9999953
No 42
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=97.79 E-value=0.0021 Score=53.21 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYN 73 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~ 73 (282)
...+...+..+.+. . |++++.|...-+..+. + ....+.+..++.-++ ..|||++..
T Consensus 15 ~~~v~~~l~~lr~~-~-d~vi~ngen~~~G~g~--~----~~~~~~l~~~G~D~~-T~GNHefD~ 70 (252)
T 2z06_A 15 LRAVGLHLPDIRDR-Y-DLVIANGENAARGKGL--D----RRSYRLLREAGVDLV-SLGNHAWDH 70 (252)
T ss_dssp HHHHHHHHHHHGGG-C-SEEEEECTTTTTTSSC--C----HHHHHHHHHHTCCEE-ECCTTTTSC
T ss_pred HHHHHHHHHHHHhh-C-CEEEEeCCCccCCCCc--C----HHHHHHHHhCCCCEE-EeccEeeEC
Confidence 45678888888887 5 8877777666432222 2 355566777777776 669999954
No 43
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}
Probab=97.75 E-value=0.00027 Score=65.35 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhcCCc-cEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Q 023422 8 SLLVLQNAVQRWNNHQKL-KFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYN 73 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~-d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~ 73 (282)
.+.++..+++.+.+. .+ -+++.+||.+.|. +. .+...-+...+.++.++ .=.+++||||+..
T Consensus 35 G~arlat~i~~~r~~-~~n~llldaGD~~qGs-~~-~~~~~g~~~i~~mN~lg-yDa~~lGNHEFd~ 97 (530)
T 4h1s_A 35 GVARLFTKVQQIRRA-EPNVLLLDAGDQYQGT-IW-FTVYKGAEVAHFMNALR-YDAMALGNHEFDN 97 (530)
T ss_dssp CHHHHHHHHHHHHHH-CSSEEEEECSCCSCSS-HH-HHHHTTHHHHHHHHHTT-CCEEECCGGGGTT
T ss_pred cHHHHHHHHHHHHhh-CcCeEEEEeCCcccch-HH-HHHhCChHHHHHHhccC-CCEEEEchhhhcc
Confidence 367888889888876 44 4678899999752 10 00011122445555553 4457899999843
No 44
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2
Probab=97.42 E-value=0.00054 Score=63.55 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhcCCcc-EEEEcCCCCCCCCCCcccH-HHHHHHHHHHHhcCCCEEEecCCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLK-FVIHFGDIVDGFCPKDQSL-EAVKKVVNEFEKFNGPAYHMIGNHCLYN 73 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d-~vi~~GDi~d~~~~~~~~~-~~~~~~~~~l~~~~~pv~~v~GNHD~~~ 73 (282)
+..+...++...+...++ +++.+||+++|. +..... ..-+...+.++.++.. +++.||||+..
T Consensus 44 ~a~l~~~i~~~~~~~~~~~LlldaGD~~~Gs-~~~~~~~~~g~~~~~~ln~lg~D-a~tlGNHEfD~ 108 (557)
T 3c9f_A 44 FISFTTHMRRIAHSRNQDLLLIDSGDRHDGN-GLSDITSPNGLKSTPIFIKQDYD-LLTIGNHELYL 108 (557)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECSCCCSSC-HHHHSSSSTTTTTHHHHTTSCCS-EECCCGGGSSS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCCc-cchhhcccCCHHHHHHHHhcCCC-EEeecchhccc
Confidence 455555666544322677 579999999752 100000 0112355667777644 56789999953
No 45
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=97.27 E-value=0.00021 Score=59.92 Aligned_cols=54 Identities=24% Similarity=0.349 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
...|.++++.+...+..|.+|++||++|.. ..+.+ +++.+.+. ++++|+||||.
T Consensus 31 ~~~l~~~l~~~~~~~~~d~ii~~GD~vd~g---~~~~~----~l~~l~~~--~~~~v~GNHd~ 84 (262)
T 2qjc_A 31 RAQLEDLLRAVSFKQGSDTLVAVGDLVNKG---PDSFG----VVRLLKRL--GAYSVLGNHDA 84 (262)
T ss_dssp HHHHHHHHHHHTCCTTTSEEEECSCCSSSS---SCHHH----HHHHHHHH--TCEECCCHHHH
T ss_pred HHHHHHHHHHHhccCCCCEEEEecCCCCCC---CCHHH----HHHHHHHC--CCEEEeCcChH
Confidence 467788888877662349999999999832 11223 33333333 79999999996
No 46
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=97.23 E-value=0.00011 Score=62.27 Aligned_cols=56 Identities=20% Similarity=0.177 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
...|.++++.+...+++|.+|++||++|.. ..+.+ +++.+.+++.++++|.||||.
T Consensus 13 ~~~l~~ll~~~~~~~~~d~~v~lGD~vdrG---~~s~~----~l~~l~~l~~~~~~v~GNHe~ 68 (280)
T 2dfj_A 13 YDELIALLHKVEFTPGKDTLWLTGDLVARG---PGSLD----VLRYVKSLGDSVRLVLGNHDL 68 (280)
T ss_dssp HHHHHHHHHHTTCCTTTCEEEECSCCSSSS---SCHHH----HHHHHHHTGGGEEECCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCCEEEEeCCcCCCC---CccHH----HHHHHHhCCCceEEEECCCcH
Confidence 456777777766533689999999999832 12222 444454555589999999995
No 47
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=97.19 E-value=0.00067 Score=58.11 Aligned_cols=60 Identities=20% Similarity=0.100 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
+..|.++++.+... ..+.++++||++|.. ..+.+.+..+...-...+..++++.||||..
T Consensus 62 ~~~L~~ll~~~~~~-~~~~~vflGD~VDRG---~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~ 121 (309)
T 2ie4_C 62 FHDLMELFRIGGKS-PDTNYLFMGDYVDRG---YYSVETVTLLVALKVRYRERITILRGNHESR 121 (309)
T ss_dssp HHHHHHHHHHHCCT-TTSCEEECSCCSSSS---TTHHHHHHHHHHHHHHCTTTEEECCCTTSST
T ss_pred HHHHHHHHHHcCCC-CCCEEEEeCCccCCC---CChHHHHHHHHHHHhhCCCcEEEEeCCCCHH
Confidence 44666777666554 567789999999842 2344444444443333455799999999974
No 48
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=97.11 E-value=0.00089 Score=57.81 Aligned_cols=59 Identities=22% Similarity=0.148 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+..|.++++.+... ..+.++++||++|.. ..+.+.+..+...-...+..++++.||||.
T Consensus 69 ~~~L~~ll~~~g~~-~~~~~vflGD~VDRG---~~s~evl~lL~~lk~~~p~~v~~lrGNHE~ 127 (330)
T 1fjm_A 69 YYDLLRLFEYGGFP-PESNYLFLGDYVDRG---KQSLETICLLLAYKIKYPENFFLLRGNHEC 127 (330)
T ss_dssp HHHHHHHHHHHCST-TSSCEEECSCCSSSS---SCHHHHHHHHHHHHHHSTTTEEECCCTTSS
T ss_pred HHHHHHHHHHhCCC-CcceEEeCCCcCCCC---CChHHHHHHHHHhhhhcCCceEEecCCchH
Confidence 45667777766544 567899999999842 234455554443322345679999999996
No 49
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=96.94 E-value=0.0017 Score=55.25 Aligned_cols=59 Identities=22% Similarity=0.148 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+..|.++++.+... ..+.++++||++|.. ..+.+.+..+.......+..++.+.||||.
T Consensus 68 ~~~L~~ll~~~g~~-~~~~~vfLGD~VDrG---~~s~evl~lL~~lk~~~p~~v~~lrGNHE~ 126 (299)
T 3e7a_A 68 YYDLLRLFEYGGFP-PESNYLFLGDYVDRG---KQSLETICLLLAYKIKYPENFFLLRGNHEC 126 (299)
T ss_dssp HHHHHHHHHHHCST-TSSCEEECSCCSSSS---SCHHHHHHHHHHHHHHSTTTEEECCCTTSS
T ss_pred HHHHHHHHHHhCCC-CCccEEeCCcccCCC---CCcHHHHHHHHHHHhhCCCcEEEEecCchh
Confidence 45666777666554 567799999999842 234555555544433455679999999996
No 50
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.86 E-value=0.0017 Score=58.99 Aligned_cols=60 Identities=20% Similarity=0.080 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
...|.++++.+...+..+.+|++||++|.. ..+.+.+..++......+..++.+.||||.
T Consensus 225 ~~~l~~~l~~~~~~~~~~~~v~lGD~vdrG---~~s~e~~~~l~~l~~~~~~~~~~lrGNHE~ 284 (477)
T 1wao_1 225 FYDLLNIFELNGLPSETNPYIFNGDFVDRG---SFSVEVILTLFGFKLLYPDHFHLLRGNHET 284 (477)
T ss_dssp HHHHHHHHHHHCCCBTTBCEEEESCCSSSS---TTHHHHHHHHHHHHHHSTTTEEEECCTTSS
T ss_pred HHHHHHHHHHcCCCCCcCeEEEeccccCCC---cchHHHHHHHHHHHhhCCCceEeecCCccH
Confidence 456667777665442345699999999842 234555555554333446789999999995
No 51
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=96.85 E-value=0.0021 Score=55.05 Aligned_cols=60 Identities=20% Similarity=0.080 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+..|.++++.....+..+.++++||++|.. ..+.+.+..+...-...+..++.+.||||.
T Consensus 72 ~~~L~~ll~~~g~~~~~~~~vflGD~VDRG---~~s~evl~lL~~lk~~~p~~v~~lrGNHE~ 131 (315)
T 3h63_A 72 FYDLLNIFELNGLPSETNPYIFNGDFVDRG---SFSVEVILTLFGFKLLYPDHFHLLRGNHET 131 (315)
T ss_dssp HHHHHHHHHHHCCCBTTBCEEEESCCSSSS---TTHHHHHHHHHHHHHHSTTTEEEECCTTSS
T ss_pred HHHHHHHHHHhCCCCCCCEEEEeCCccCCC---cChHHHHHHHHHhhhhcCCcEEEEecCccc
Confidence 445666666554432335699999999842 234455555444333345679999999996
No 52
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0029 Score=54.56 Aligned_cols=60 Identities=17% Similarity=0.041 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+..|.++++.+...+..+.+|++||++|.. ..+.+.+..++..-...+..++.+.||||.
T Consensus 76 ~~~L~~ll~~~g~~~~~~~~vflGD~VDRG---~~s~evl~lL~~lk~~~p~~v~llrGNHE~ 135 (335)
T 3icf_A 76 FYDVLNLFRKFGKVGPKHTYLFNGDFVDRG---SWSCEVALLFYCLKILHPNNFFLNRGNHES 135 (335)
T ss_dssp HHHHHHHHHHHCCCBTTEEEEECSCCSSSS---TTHHHHHHHHHHHHHHCTTTEEECCCTTSS
T ss_pred HHHHHHHHHHcCCCCCCcEEEEeCCccCCC---cChHHHHHHHHHHhhhCCCcEEEecCchhh
Confidence 445666676655431235699999999842 234555555544433445679999999995
No 53
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=96.73 E-value=0.0028 Score=55.03 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+..|.++++..... ..+.++++||++|.. ..+.+.+..+...-...+..++.+.||||.
T Consensus 82 ~~dL~~ll~~~g~~-~~~~~vfLGD~VDRG---~~s~Evl~lL~~lk~~~p~~v~llrGNHE~ 140 (357)
T 3ll8_A 82 FFDLMKLFEVGGSP-ANTRYLFLGDYVDRG---YFSIECVLYLWALKILYPKTLFLLRGNHEC 140 (357)
T ss_dssp HHHHHHHHHHHCCT-TTCCEEECSCCSSSS---TTHHHHHHHHHHHHHHCTTTEEECCCTTSS
T ss_pred HHHHHHHHHhcCCC-CCcEEEECCCccCCC---cChHHHHHHHHHhhhhcCCcEEEEeCchhh
Confidence 34556666544433 668899999999842 234455555544433445679999999996
No 54
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=96.63 E-value=0.0017 Score=56.42 Aligned_cols=60 Identities=20% Similarity=0.115 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhcC-------CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHH---hcCCCEEEecCCCCC
Q 023422 9 LLVLQNAVQRWNNHQ-------KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFE---KFNGPAYHMIGNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~-------~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~---~~~~pv~~v~GNHD~ 71 (282)
+..|.++++.+...+ ++|.+|++||++|.. ..+.+.+..+...-. ..+.+++++.||||.
T Consensus 83 ~~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG---~~s~evl~~l~~l~~~~~~~~~~v~~v~GNHE~ 152 (342)
T 2z72_A 83 YDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRG---HQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQ 152 (342)
T ss_dssp HHHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSS---SCHHHHHHHHHHHHHHHHHTTCEEEECCCHHHH
T ss_pred HHHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCC---CCHHHHHHHHHHHHHHHhhCCCeEEEEecCCcH
Confidence 345666666544221 479999999999842 123344444333221 344679999999996
No 55
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Probab=96.45 E-value=0.0058 Score=55.47 Aligned_cols=74 Identities=8% Similarity=0.032 Sum_probs=44.2
Q ss_pred cccCHHHHHHHHHccCcEEEEEeCcccCCCcccc-CCCC-----eEEecccccc-CCCCCCceEEEEEeCCeEEEEeccc
Q 023422 200 LLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSID-THGI-----HHRVLEAALE-CPPGTDAFGHIDAYDDRLSLVGTGR 272 (282)
Q Consensus 200 ~~~~~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~-~~~i-----~~~~~~~~~~-~~~~~~~f~~v~~~~~~~~~~~~~~ 272 (282)
.....+.+.+.|.+.+ +++++-||.-...-+.. .++. ..+++=|... +....+.-+++.++++...++.|..
T Consensus 258 ~~FG~d~v~~FL~~n~-l~lIIRaHq~v~~Gy~~~~~~~~~g~~kliTVFSApNYc~~~~N~gAvl~i~~~~~~~~~f~~ 336 (521)
T 1aui_A 258 YFYSYPAVCEFLQHNN-LLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQFNC 336 (521)
T ss_dssp EEECHHHHHHHHHHTT-CSEEEECCSCCTTSEEECCBCTTTSSBSEEEECCCSSGGGTSCCCEEEEEEETTEEEEEEECC
T ss_pred cccCHHHHHHHHHHcC-CcEEEEccchhccceeeecCCcCCCCCeEEEEeCCcccCCCCCceEEEEEEeCCcceEEEecC
Confidence 3455677888888885 99999999876543221 1220 1233333222 1223344557788888888888876
Q ss_pred cc
Q 023422 273 MQ 274 (282)
Q Consensus 273 ~~ 274 (282)
.+
T Consensus 337 ~~ 338 (521)
T 1aui_A 337 SP 338 (521)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 56
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=94.38 E-value=0.11 Score=46.91 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=33.9
Q ss_pred cEEEEEeCcccCCCccccC----CCCeEEeccccccCCCCCCceEEEEEeC---CeEEEEeccc
Q 023422 216 CVKVCLAGHDHQGGHSIDT----HGIHHRVLEAALECPPGTDAFGHIDAYD---DRLSLVGTGR 272 (282)
Q Consensus 216 ~v~~~~~GH~H~~~~~~~~----~~i~~~~~~~~~~~~~~~~~f~~v~~~~---~~~~~~~~~~ 272 (282)
.+.++++||.|........ ..+..+.+++++.+. ...+|++.. ..+++..++.
T Consensus 405 ~PhVyf~Gnq~~f~t~~~~~~~~~~vrLv~VP~Fs~T~----~~vLvdl~tLe~~~v~f~~~~~ 464 (476)
T 3e0j_A 405 CPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQ----TACLVNLRSLACQPISFSGFGA 464 (476)
T ss_dssp CCSEEEEEEESSCEEEEEECSSCCEEEEEEEECHHHHC----EEEEEETTTTBCCEEEEEECCS
T ss_pred CCcEEEeCCCCccceeEEecCCCCeEEEEEcCCcCCCC----eEEEEECccccEEEEEEecccC
Confidence 4679999999998776531 236667788887653 556666643 2344444443
No 57
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=91.00 E-value=0.29 Score=43.89 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCC----------------CcccHHHHHHH-HHHHHhcC--CCEEEecCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCP----------------KDQSLEAVKKV-VNEFEKFN--GPAYHMIGNH 69 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~----------------~~~~~~~~~~~-~~~l~~~~--~pv~~v~GNH 69 (282)
.+.|..+++.+++..+||.+|++|..+|...+ ...-.+.++.. ...++++. +.|+.|||+|
T Consensus 165 yepL~~Ll~~v~~~~kPdvLIL~GPFvD~~hp~i~~G~~p~~~~~~~~~~t~~~lF~~~i~~il~~l~~~t~VVlVPS~r 244 (460)
T 3flo_A 165 LELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTISPHIQTVLIPSTK 244 (460)
T ss_dssp CHHHHHHHHHCCCCCCCSEEEEESCSSBTTCHHHHHTCCCCCTTCSSCCSSHHHHHHHHTHHHHTTSCTTSEEEEECCTT
T ss_pred hHHHHHHHHHHHhccCCCEEEEecCcccccCcccccCcccccccccccccCHHHHHHHHHHHHHHhccCCCEEEEeCCcc
Confidence 46778888877764379999999999984311 01112333332 23344443 6899999999
Q ss_pred CCC
Q 023422 70 CLY 72 (282)
Q Consensus 70 D~~ 72 (282)
|..
T Consensus 245 D~~ 247 (460)
T 3flo_A 245 DAI 247 (460)
T ss_dssp BTT
T ss_pred ccc
Confidence 974
No 58
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=73.35 E-value=8.7 Score=25.34 Aligned_cols=49 Identities=16% Similarity=0.011 Sum_probs=36.0
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
.++++.+++. +..+||++.|... +....+.......++|++.++++-++
T Consensus 17 ~~v~kai~~g-kaklViiA~D~~~---------~~~~~i~~lc~~~~Ip~~~v~sk~eL 65 (82)
T 3v7e_A 17 KQTVKALKRG-SVKEVVVAKDADP---------ILTSSVVSLAEDQGISVSMVESMKKL 65 (82)
T ss_dssp HHHHHHHTTT-CEEEEEEETTSCH---------HHHHHHHHHHHHHTCCEEEESCHHHH
T ss_pred HHHHHHHHcC-CeeEEEEeCCCCH---------HHHHHHHHHHHHcCCCEEEECCHHHH
Confidence 4556666666 8999999999962 45556666667778999999876543
No 59
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=68.15 E-value=8.5 Score=27.24 Aligned_cols=50 Identities=24% Similarity=0.213 Sum_probs=36.0
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
..++..+.+. +..+||+++|... .+....+....+..++|++++.+.-++
T Consensus 31 ~~v~kaI~~g-ka~LVvIA~D~~p--------~~i~~~l~~lC~~~~VP~~~v~sk~~L 80 (113)
T 3jyw_G 31 NHVVALIENK-KAKLVLIANDVDP--------IELVVFLPALCKKMGVPYAIVKGKARL 80 (113)
T ss_dssp HHHHHTTTTT-CCSEEEECSCCSS--------HHHHTTHHHHHHHTTCCCEECSCSTTT
T ss_pred HHHHHHHHcC-CceEEEEeCCCCH--------HHHHHHHHHHHHHcCCCEEEECCHHHH
Confidence 3455555665 8999999999963 133344556667788999999998776
No 60
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=67.77 E-value=17 Score=29.29 Aligned_cols=47 Identities=11% Similarity=0.031 Sum_probs=36.1
Q ss_pred HHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 17 QRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 17 ~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
+.+.+. ..|++++.|..- ...+....+.+.+++...|++..|||.+-
T Consensus 30 ~~~~~~-GtDaI~vGgs~g-------vt~~~~~~~v~~ik~~~~Piil~p~~~~~ 76 (235)
T 3w01_A 30 DAICMS-QTDAIMIGGTDD-------VTEDNVIHLMSKIRRYPLPLVLEISNIES 76 (235)
T ss_dssp HHHHTS-SCSEEEECCSSC-------CCHHHHHHHHHHHTTSCSCEEEECCCSTT
T ss_pred HHHHHc-CCCEEEECCcCC-------cCHHHHHHHHHHhcCcCCCEEEecCCHHH
Confidence 345566 899999999442 35677777888888777899999999874
No 61
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=66.63 E-value=11 Score=30.27 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=36.6
Q ss_pred HHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 15 AVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 15 ~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
.++.+.+. ..|++++.|=. .-+.+....+.+.+++...|++..|||++-
T Consensus 23 ~~~~~~~~-GtD~i~vGGs~-------gvt~~~~~~~v~~ik~~~~Pvvlfp~~~~~ 71 (228)
T 3vzx_A 23 QLEILCES-GTDAVIIGGSD-------GVTEDNVLRMMSKVRRFLVPCVLEVSAIEA 71 (228)
T ss_dssp HHHHHHTS-SCSEEEECCCS-------CCCHHHHHHHHHHHTTSSSCEEEECSCGGG
T ss_pred HHHHHHHc-CCCEEEECCcC-------CCCHHHHHHHHHHhhccCCCEEEeCCCHHH
Confidence 34445566 89999999932 135677777888887777899999999874
No 62
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=63.88 E-value=5.7 Score=32.55 Aligned_cols=43 Identities=9% Similarity=-0.048 Sum_probs=28.3
Q ss_pred EEEEEeCcccCCCccccCC--CCeEEeccccccCCCCCCceEEEEEeCCeE
Q 023422 217 VKVCLAGHDHQGGHSIDTH--GIHHRVLEAALECPPGTDAFGHIDAYDDRL 265 (282)
Q Consensus 217 v~~~~~GH~H~~~~~~~~~--~i~~~~~~~~~~~~~~~~~f~~v~~~~~~~ 265 (282)
.+.+++||+|....... + ++..+..|+.. .+.++.+.+..+++
T Consensus 197 ~~~vvfGHt~~~~~~~~-~~~~~i~IDtG~~~-----gG~Lt~l~l~~~~~ 241 (262)
T 2qjc_A 197 PETVVFGHDARRGLQEQ-YKPLAIGLDSRCVY-----GGRLSAAVFPGGCI 241 (262)
T ss_dssp SSEEEECCCGGGCCBCT-TTTTEEECCCBGGG-----TSEEEEEEETTTEE
T ss_pred CCEEEECCCcccccccc-CCCCEEEeeCcccc-----CCeeEEEEEcCCcE
Confidence 56899999999865444 5 66444444443 23677888877653
No 63
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=62.20 E-value=15 Score=26.18 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=33.8
Q ss_pred HHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 14 NAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 14 ~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
++++.+.+. +..+||+++|... . .....+.......++|+++++++-++
T Consensus 27 ~v~kai~~g-kakLViiA~D~~~------~--~~~~~l~~lc~~~~VP~~~v~sk~eL 75 (121)
T 2lbw_A 27 EVVKALRKG-EKGLVVIAGDIWP------A--DVISHIPVLCEDHSVPYIFIPSKQDL 75 (121)
T ss_dssp HHHHHHHHS-CCCEEEECTTCSC------T--THHHHHHHHHHHTCCCEEECCCHHHH
T ss_pred HHHHHHHcC-CceEEEEeCCCCH------H--HHHHHHHHHHHhcCCcEEEECCHHHH
Confidence 455566666 8999999999974 1 12334455666778999998866553
No 64
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.61 E-value=35 Score=23.15 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=32.4
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
.++++.+.+. +..+||++.|.. .+....+.......++|++...|+-+
T Consensus 21 ~~v~kai~~g-ka~lViiA~D~~---------~~~~~~i~~~c~~~~ip~~~~~~s~~ 68 (99)
T 3j21_Z 21 NETIRLAKTG-GAKLIIVAKNAP---------KEIKDDIYYYAKLSDIPVYEFEGTSV 68 (99)
T ss_dssp HHHHHHHHHT-CCSEEEEECCCC---------HHHHHHHHHHHHHTTCCEEEECCCSC
T ss_pred HHHHHHHHcC-CccEEEEeCCCC---------HHHHHHHHHHHHHcCCCEEEeCCCHH
Confidence 4556666666 899999999932 34455555566667899877755433
No 65
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=60.46 E-value=34 Score=23.29 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 67 (282)
.++++.+.+. +..+||++.| .. .+....+.......++|++.+.+
T Consensus 22 ~~v~kai~~g-ka~lViiA~D-~~--------~~~~~~l~~~c~~~~vp~~~~~~ 66 (101)
T 1w41_A 22 RKSIQYAKMG-GAKLIIVARN-AR--------PDIKEDIEYYARLSGIPVYEFEG 66 (101)
T ss_dssp HHHHHHHHHT-CCSEEEEETT-SC--------HHHHHHHHHHHHHHTCCEEEESS
T ss_pred HHHHHHHHcC-CCcEEEEeCC-CC--------HHHHHHHHHHHHhcCCCEEEecC
Confidence 3455666666 8999999999 42 24445555555666789887644
No 66
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=59.71 E-value=19 Score=30.66 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=35.1
Q ss_pred HHHHHHHHHccCcEEEEEeCcccCCCccccCCCCeEEeccccccCCCCCCceEEEEEeCCeEEEE
Q 023422 204 CNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECPPGTDAFGHIDAYDDRLSLV 268 (282)
Q Consensus 204 ~~~~~~~l~~~~~v~~~~~GH~H~~~~~~~~~~i~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~ 268 (282)
.+.+.+.+..++ ++++++||+|........++.. +++-+.+.. .+..+++.++++++...
T Consensus 267 ~~~~~~fl~~~~-~~~IV~GHt~~~~~~~~~~~~~-i~Idsg~~~---gg~la~l~i~~~~~~~v 326 (342)
T 2z72_A 267 EAELDTILQHFN-VNHIVVGHTSQERVLGLFHNKV-IAVDSSIKV---GKSGELLLLENNRLIRG 326 (342)
T ss_dssp HHHHHHHHHHHT-CSEEEECSSCCSSCEEETTTTE-EECCCCGGG---SSCCCEEEEETTEEEEE
T ss_pred hHHHHHHHHHCC-CcEEEECCCcccchhhhcCCCE-EEEECCCCC---CCcEEEEEEECCEEEEE
Confidence 345566666664 7899999999876432213322 333332222 24566788887775443
No 67
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=59.53 E-value=25 Score=25.26 Aligned_cols=50 Identities=16% Similarity=0.020 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
.++++.+.+. +..+||++.|... . .....+.......++|+++++++-++
T Consensus 30 ~~v~Kai~~g-ka~LViiA~D~~p------~--~~~~~i~~lc~~~~Ip~~~v~sk~~L 79 (126)
T 2xzm_U 30 HEVLRTIEAK-QALFVCVAEDCDQ------G--NYVKLVKALCAKNEIKYVSVPKRASL 79 (126)
T ss_dssp HHHHHHHHHT-CCSEEEEESSCCS------T--THHHHHHHHHHHTTCCEEEESCSHHH
T ss_pred HHHHHHHHcC-CceEEEEeCCCCh------H--HHHHHHHHHHHHhCCCEEEECCHHHH
Confidence 3455566666 8999999999963 1 22234445555678999999876664
No 68
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=58.59 E-value=35 Score=23.91 Aligned_cols=56 Identities=11% Similarity=-0.027 Sum_probs=38.6
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKI 85 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~ 85 (282)
.++++.+.+. +..+||++.|... .....+.......++|++.++|+-+ ++-..++.
T Consensus 32 ~~t~kai~~g-kakLVilA~D~~~---------~~~~~i~~~c~~~~ipv~~~~~s~~-------eLG~A~Gk 87 (112)
T 3iz5_f 32 KTVLKTLRSS-LGKLIILANNCPP---------LRKSEIETYAMLAKISVHHFHGNNV-------DLGTACGK 87 (112)
T ss_dssp HHHHHHHHTT-CCSEEEECSCCCH---------HHHHHHHHHHHHTTCCEECCCCTTC-------THHHHHCT
T ss_pred HHHHHHHHcC-CceEEEEeCCCCH---------HHHHHHHHHHHHcCCcEEEeCCCHH-------HHHHHhCC
Confidence 3455666666 8999999999852 3444555556667799999977666 45556654
No 69
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=55.05 E-value=35 Score=23.71 Aligned_cols=55 Identities=16% Similarity=0.066 Sum_probs=34.5
Q ss_pred HHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcC
Q 023422 14 NAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKI 85 (282)
Q Consensus 14 ~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~ 85 (282)
++++.+.+. +..+||++.|.-. +....+.......++|++.+.++ ..++-.+++.
T Consensus 28 ~v~kai~~g-ka~lViiA~D~~~---------~~~~~l~~~c~~~~Vp~~~~~~s-------k~eLG~a~G~ 82 (110)
T 3cpq_A 28 RTIKFVKHG-EGKLVVLAGNIPK---------DLEEDVKYYAKLSNIPVYQHKIT-------SLELGAVCGK 82 (110)
T ss_dssp HHHHHHHTT-CCSEEEECTTCBH---------HHHHHHHHHHHHTTCCEEECCSC-------HHHHHHHTTC
T ss_pred HHHHHHHcC-CceEEEEeCCCCH---------HHHHHHHHHHHHcCCCEEEEcCC-------HHHHHHHhCC
Confidence 445555555 8899999999942 33444445555667898877442 2345555653
No 70
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=53.27 E-value=26 Score=26.37 Aligned_cols=29 Identities=7% Similarity=0.086 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d 36 (282)
.+. +.+.++++.+.+. +.|+||.+|=..-
T Consensus 50 ~Dd-~~i~~al~~a~~~-~~DlVittGG~s~ 78 (164)
T 3pzy_A 50 ADG-SPVGEALRKAIDD-DVDVILTSGGTGI 78 (164)
T ss_dssp CSS-HHHHHHHHHHHHT-TCSEEEEESCCSS
T ss_pred CCH-HHHHHHHHHHHhC-CCCEEEECCCCCC
Confidence 345 7788888777654 6899999998874
No 71
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=53.01 E-value=44 Score=22.76 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=30.4
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEec
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMI 66 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~ 66 (282)
.++++.+.+. +..+||++.|... .....+.......++|++.+.
T Consensus 25 ~~v~kai~~g-ka~lViiA~D~~~---------~~~~~i~~~c~~~~vp~~~~~ 68 (101)
T 3v7q_A 25 DLVIKEIRNA-RAKLVLLTEDASS---------NTAKKVTDKCNYYKVPYKKVE 68 (101)
T ss_dssp HHHHHHHHTT-CCSEEEEETTSCH---------HHHHHHHHHHHHTTCCEEEES
T ss_pred hhhHHHHhcC-ceeEEEEeccccc---------cchhhhcccccccCCCeeeec
Confidence 3455566666 8999999999973 234445555566778998883
No 72
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=52.24 E-value=38 Score=27.50 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=34.4
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
..++..+++. +..+||+++|... .+....+-..++..++|++++.|.-++
T Consensus 130 neVtKaIekg-KAqLVVIA~DvdP--------ielv~~LPaLCee~~VPY~~V~sK~~L 179 (255)
T 4a17_F 130 NHITTLIENK-QAKLVVIAHDVDP--------IELVIFLPQLCRKNDVPFAFVKGKAAL 179 (255)
T ss_dssp HHHHHHHHTS-CCSEEEEESCCSS--------THHHHHHHHHHHHTTCCEEEESCHHHH
T ss_pred HHHHHHHHcC-CceEEEEeCCCCh--------HHHHHHHHHHHHHcCCCEEEECCHHHH
Confidence 3455566666 8899999999973 133334445566778999999986553
No 73
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=51.64 E-value=30 Score=23.57 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEec
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMI 66 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~ 66 (282)
.++++.+.+. +..+||++.|... .....+.......++|++.+.
T Consensus 24 ~~v~kai~~g-ka~lViiA~D~~~---------~~~~~i~~~c~~~~ip~~~~~ 67 (101)
T 3on1_A 24 EQVVKAVQNG-QVTLVILSSDAGI---------HTKKKLLDKCGSYQIPVKVVG 67 (101)
T ss_dssp HHHHHHHHTT-CCSEEEEETTSCH---------HHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHcC-CCcEEEEeCCCCH---------HHHHHHHHHHHHcCCCEEEeC
Confidence 3455666666 8999999999973 234455555566678998763
No 74
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=49.86 E-value=16 Score=26.67 Aligned_cols=48 Identities=19% Similarity=0.099 Sum_probs=31.4
Q ss_pred HHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 14 NAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 14 ~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
++++.+.+. +..+||+++|... . +....+....+..++|++++.++-+
T Consensus 39 ~v~kai~~g-kakLViiA~D~~p------~--~~~~~l~~lc~~~~VP~~~v~sk~e 86 (134)
T 2ale_A 39 EATKTLNRG-ISEFIIMAADCEP------I--EILLHLPLLCEDKNVPYVFVPSRVA 86 (134)
T ss_dssp HHHHHHHHT-CEEEEEEETTCSS------G--GGGTHHHHHHHHHTCCEEEESCHHH
T ss_pred HHHHHHHhC-CCeEEEEeCCCCH------H--HHHHHHHHHHHhcCCCEEEECCHHH
Confidence 345555555 8899999999974 1 1223444556667899988865443
No 75
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=48.52 E-value=24 Score=28.81 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=23.9
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCE--------------EEecCCCCC
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPA--------------YHMIGNHCL 71 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv--------------~~v~GNHD~ 71 (282)
.||+||++.=.-+ ..+......+++|+ |+||||-|-
T Consensus 158 ~Pdll~V~Dp~~e------------~~Ai~EA~~l~IPvIaivDTn~dp~~VdypIP~NDds 207 (256)
T 2vqe_B 158 LPDAIFVVDPTKE------------AIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDA 207 (256)
T ss_dssp CCSEEEESCTTTT------------HHHHHHHHHTTCCCEECCCTTSCGGGCSEECCSCSSC
T ss_pred CCCEEEEeCCccc------------hHHHHHHHHcCCCEEEEecCCCCchhcceEeecCCch
Confidence 6899888753332 24556666778887 566777773
No 76
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=46.93 E-value=53 Score=23.79 Aligned_cols=55 Identities=18% Similarity=0.085 Sum_probs=35.3
Q ss_pred HHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcC
Q 023422 14 NAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKI 85 (282)
Q Consensus 14 ~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~ 85 (282)
++.+.+.+. +..+||++.|... ......+.......++|++++..+- ++-.+++.
T Consensus 48 ~v~kal~~g-kaklViiA~D~~~--------~~~~~~l~~lc~~~~IP~~~v~sk~--------eLG~a~G~ 102 (135)
T 2aif_A 48 EATKALNRG-IAEIVLLAADAEP--------LEILLHLPLVCEDKNTPYVFVRSKV--------ALGRACGV 102 (135)
T ss_dssp HHHHHHHTT-CEEEEEEETTCSC--------HHHHHHHHHHHHHTTCCEEEESCHH--------HHHHHTTC
T ss_pred HHHHHHHcC-CCeEEEEecCCCh--------HHHHhHHHHHHHhcCCcEEEECCHH--------HHHHHhCC
Confidence 444555555 7899999999974 1223455556666788998875433 45556653
No 77
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=45.71 E-value=65 Score=24.14 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d 36 (282)
.+..+.+.++++.+.+..+.|+||.+|=+.-
T Consensus 54 ~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~ 84 (169)
T 1y5e_A 54 KDDKESIQQAVLAGYHKEDVDVVLTNGGTGI 84 (169)
T ss_dssp CSSHHHHHHHHHHHHTCTTCSEEEEECCCSS
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEEcCCCCC
Confidence 4556788888887766226899999998864
No 78
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=44.92 E-value=47 Score=24.91 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d 36 (282)
.+..+.+.++++.+... +.|+||.+|=+.-
T Consensus 52 ~Dd~~~I~~~l~~a~~~-~~DlVittGG~g~ 81 (167)
T 2g2c_A 52 PEGYDTVVEAIATALKQ-GARFIITAGGTGI 81 (167)
T ss_dssp CSSHHHHHHHHHHHHHT-TCSEEEEESCCSS
T ss_pred CCCHHHHHHHHHHHHhC-CCCEEEECCCCCC
Confidence 45677888888887765 5899999998863
No 79
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=44.84 E-value=55 Score=27.16 Aligned_cols=54 Identities=7% Similarity=-0.044 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCccc--HHHHHHHHHHHHh-cCCCEEE-ec---CCCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQS--LEAVKKVVNEFEK-FNGPAYH-MI---GNHCL 71 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~--~~~~~~~~~~l~~-~~~pv~~-v~---GNHD~ 71 (282)
.+.+.+.++.+.+. ..|++++. +++ -+ .+..+.+...+++ ...|++. .| ||++-
T Consensus 52 ~~~~~~~~~~~~~s-GtDai~VG---S~~-----vt~~~~~~~~~v~~ik~~~~lPvil~fPP~~g~~~~ 112 (286)
T 3vk5_A 52 VTEAVEKAAELTRL-GFAAVLLA---STD-----YESFESHMEPYVAAVKAATPLPVVLHFPPRPGAGFP 112 (286)
T ss_dssp HHHHHHHHHHHHHT-TCSCEEEE---CSC-----CSSHHHHHHHHHHHHHHHCSSCEEEECCCBTTTBSC
T ss_pred cHHHHHHHHHHHhc-CCCEEEEc---cCC-----CCcchHHHHHHHHHHHHhCCCCEEEECCCCCCCccc
Confidence 34555667777777 78988776 432 34 6777888888888 6789999 99 99984
No 80
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=42.28 E-value=57 Score=26.45 Aligned_cols=49 Identities=16% Similarity=0.117 Sum_probs=32.4
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
..+...+++. +..+||++.|+.. .+....+-..+.+.++|+.+|+|--+
T Consensus 133 neVTklVE~k-KAqLVVIA~DVdP--------iElV~fLPaLC~k~gVPY~iVk~Kar 181 (258)
T 3iz5_H 133 NHVTYLIEQS-KAQLVVIAHDVDP--------IELVVWLPALCRKMEVPYCIVKGKAR 181 (258)
T ss_dssp HHHHHHHHTT-CEEEEEEESCCSS--------THHHHHHHHHHTTTTCCEEEESCHHH
T ss_pred HHHHHHHHcC-cceEEEEeCCCCh--------HHHHhHHHHHHHhcCCCeEEECCHHH
Confidence 3444555555 8899999999963 13333444455667899999987443
No 81
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=40.85 E-value=1.1e+02 Score=26.21 Aligned_cols=58 Identities=7% Similarity=0.072 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhcCCccEEEEc-C-CCCCCC--CCCcccHHHHHHHHHHHHhcCCCEEEecC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHF-G-DIVDGF--CPKDQSLEAVKKVVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~-G-Di~d~~--~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 67 (282)
+..+++++..+.+- +||+||+. | |...++ ..-.-+.+.+..+.+.+..++.|+.++.|
T Consensus 277 l~~~~~~l~~l~~f-~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~~~~~~v~vle 338 (362)
T 3men_A 277 FERVDDALRELRRF-APDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQE 338 (362)
T ss_dssp HHHHHHHHHHHHHH-CCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred HHHHHHHHHHHHhc-CCCEEEEECcccCcCCCCCCCccCCHHHHHHHHHHHHhhCCCEEEEEC
Confidence 55677777777677 89997763 3 444332 12235678888899999988888877653
No 82
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=38.48 E-value=59 Score=22.94 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
.++++.+.+. +||++++ |+- .... ...+ +++.+++.++|++++.|+-|.
T Consensus 43 ~eAl~~~~~~-~~Dlvll--Di~--mP~~-~G~e----l~~~lr~~~ipvI~lTa~~~~ 91 (123)
T 2lpm_A 43 QEALDIARKG-QFDIAII--DVN--LDGE-PSYP----VADILAERNVPFIFATGYGSK 91 (123)
T ss_dssp HHHHHHHHHC-CSSEEEE--CSS--SSSC-CSHH----HHHHHHHTCCSSCCBCTTCTT
T ss_pred HHHHHHHHhC-CCCEEEE--ecC--CCCC-CHHH----HHHHHHcCCCCEEEEecCccH
Confidence 4566666677 8999888 554 1111 2223 334445557899999997653
No 83
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=38.00 E-value=64 Score=24.50 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d 36 (282)
.+..+.+.++++.+.+....|+||.+|=..-
T Consensus 63 ~Dd~~~I~~al~~a~~~~~~DlVittGG~s~ 93 (178)
T 2pjk_A 63 PDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp CSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 4556778888877765424899999998774
No 84
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=37.77 E-value=38 Score=29.26 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCC
Q 023422 11 VLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGN 68 (282)
Q Consensus 11 ~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GN 68 (282)
.+.++-+.+.+. +||+|++.||... ... .......++|++.+-|+
T Consensus 82 ~~~~l~~~l~~~-kPD~Vlv~gd~~~-------~~a-----alaA~~~~IPv~h~eag 126 (385)
T 4hwg_A 82 VIEKVDEVLEKE-KPDAVLFYGDTNS-------CLS-----AIAAKRRKIPIFHMEAG 126 (385)
T ss_dssp HHHHHHHHHHHH-CCSEEEEESCSGG-------GGG-----HHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHhc-CCcEEEEECCchH-------HHH-----HHHHHHhCCCEEEEeCC
Confidence 344445555666 9999999999874 111 11223457899887654
No 85
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=37.68 E-value=17 Score=26.90 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=30.8
Q ss_pred HHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 14 NAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 14 ~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
++++.+++. +..+||+++|... .+....+....+..++|+++++++-+
T Consensus 57 ev~KaI~~g-kakLVIIA~D~~p--------~e~~~~l~~lC~~~~VP~~~v~sk~e 104 (144)
T 2jnb_A 57 EATKTLNRG-ISEFIVMAADAEP--------LEIILHLPLLCEDKNVPYVFVRSKQA 104 (144)
T ss_dssp HHHHHHHHT-CEEEEEEETTCSC--------HHHHTTSCSSCGGGCCCCEEESCSHH
T ss_pred HHHHHHHhC-CCeEEEEeCCCCH--------HHHHHHHHHHHHHhCCCEEEECCHHH
Confidence 345555555 8899999999973 12233333444556789988876544
No 86
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=36.07 E-value=79 Score=23.94 Aligned_cols=31 Identities=3% Similarity=0.105 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d 36 (282)
.+..+.+.++++.+....+.|+||.+|=+.-
T Consensus 50 ~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~ 80 (178)
T 2pbq_A 50 PDERDLIEKTLIELADEKGCSLILTTGGTGP 80 (178)
T ss_dssp CSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 4556778888887765225899999998763
No 87
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=35.64 E-value=1.1e+02 Score=22.73 Aligned_cols=31 Identities=10% Similarity=0.412 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d 36 (282)
.+..+.+.++++.+....+.|+||.+|=..-
T Consensus 53 ~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~ 83 (167)
T 1uuy_A 53 PDEVERIKDILQKWSDVDEMDLILTLGGTGF 83 (167)
T ss_dssp CSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 4567788888887764226899999998763
No 88
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=35.61 E-value=1e+02 Score=23.14 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d 36 (282)
.+..+.+.+++..+....+.|+||.+|=+.-
T Consensus 63 ~Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 63 PDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp CSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 3456677777776654437899999998874
No 89
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=34.27 E-value=34 Score=24.21 Aligned_cols=49 Identities=14% Similarity=0.075 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
.++.+.+.+. +..+||++.|... .. ....+.......++|+++++.+-+
T Consensus 35 ~~v~kai~~g-ka~lViiA~D~~p-----~~---~~~~l~~lc~~~~VP~~~v~sk~e 83 (120)
T 1xbi_A 35 NEVTKAVERG-IAKLVIIAEDVKP-----EE---VVAHLPYLCEEKGIPYAYVASKQD 83 (120)
T ss_dssp HHHHHHHHHT-CCSEEEEESCCSS-----GG---GTTTHHHHHHHHTCCEEEESCHHH
T ss_pred HHHHHHHHcC-CceEEEEcCCCCh-----HH---HHHHHHHHHHhcCCCEEEeCCHHH
Confidence 3455556666 8899999999974 11 122333444456789877765443
No 90
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=33.56 E-value=42 Score=25.88 Aligned_cols=31 Identities=10% Similarity=0.318 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d 36 (282)
.+..+.+.++++.+....+.|+||.+|=..-
T Consensus 60 ~Dd~~~I~~al~~a~~~~~~DlVIttGGtg~ 90 (189)
T 1jlj_A 60 PDEIEEIKETLIDWCDEKELNLILTTGGTGF 90 (189)
T ss_dssp CSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CCCHHHHHHHHHHHhhcCCCCEEEEcCCCCC
Confidence 4567788888887765226899999998863
No 91
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=33.28 E-value=40 Score=27.44 Aligned_cols=50 Identities=24% Similarity=0.182 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
..++..+.+. +..+||++.|... . +....+...+...++|++++.++-|+
T Consensus 137 keV~KaIekg-KAkLVVIA~DadP------~--eivk~LpaLC~k~gVPy~~V~sK~eL 186 (256)
T 3izc_H 137 NHVVALIENK-KAKLVLIANDVDP------I--ELVVFLPALCKKMGVPYAIVKGKARL 186 (256)
T ss_dssp HHHHHHHHHT-CCSEEEEESCCSS------G--GGTTHHHHHHHHHTCCEEEESCHHHH
T ss_pred HHHHHHHHhC-cceEEEEeCCCCh------H--HHHHHHHHHHHhcCCCEEEECCHHHH
Confidence 3455666666 8899999999974 1 12223455666678999988876554
No 92
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=32.84 E-value=1.1e+02 Score=20.60 Aligned_cols=53 Identities=11% Similarity=-0.022 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
..+++.+.+. .||+||+-=++-+ ....+..+.+.+.-....+|++++.+..+.
T Consensus 37 ~~a~~~l~~~-~~dlvi~d~~l~~-----~~g~~~~~~l~~~~~~~~~pii~~s~~~~~ 89 (133)
T 3nhm_A 37 ASGLQQALAH-PPDVLISDVNMDG-----MDGYALCGHFRSEPTLKHIPVIFVSGYAPR 89 (133)
T ss_dssp HHHHHHHHHS-CCSEEEECSSCSS-----SCHHHHHHHHHHSTTTTTCCEEEEESCCC-
T ss_pred HHHHHHHhcC-CCCEEEEeCCCCC-----CCHHHHHHHHHhCCccCCCCEEEEeCCCcH
Confidence 4455566666 7999888655543 122233333222111124799999887654
No 93
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=32.50 E-value=44 Score=23.59 Aligned_cols=48 Identities=8% Similarity=0.065 Sum_probs=29.2
Q ss_pred HHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 14 NAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 14 ~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
++.+.+.+. +..+||++.|... .. ....+.......++|+++++.+-+
T Consensus 36 ~v~kal~~g-ka~lViiA~D~~~-----~~---~~~~l~~lc~~~~Vp~~~~~sk~e 83 (120)
T 1vq8_F 36 ETTKSIERG-SAELVFVAEDVQP-----EE---IVMHIPELADEKGVPFIFVEQQDD 83 (120)
T ss_dssp HHHHHHHHT-CCSEEEEESCCSS-----GG---GTTTHHHHHHTTCCCEEEESCHHH
T ss_pred HHHHHHHcC-CceEEEEeCCCCh-----HH---HHHHHHHHHHhcCCCEEEECCHHH
Confidence 344555555 7899999999974 11 112333445556789877754433
No 94
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=32.04 E-value=44 Score=23.75 Aligned_cols=48 Identities=10% Similarity=0.000 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 14 NAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 14 ~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
++.+.+.+. +..+||++.|... ... ...+.......++|++++..+-+
T Consensus 35 ~v~kal~~g-ka~lViiA~D~~~-----~~~---~~~l~~lc~~~~Vp~~~v~sk~e 82 (124)
T 2fc3_A 35 ETTKAVERG-LAKLVVIAEDVDP-----PEI---VMHLPLLCDEKKIPYVYVPSKKR 82 (124)
T ss_dssp HHHHHHHTT-CCSEEEEETTCSS-----GGG---TTTHHHHHHHTTCCEEEESCHHH
T ss_pred HHHHHHHcC-CceEEEEcCCCCh-----HHH---HHHHHHHHHHcCCCEEEECCHHH
Confidence 344555555 7899999999974 111 12333344556789877754433
No 95
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=31.77 E-value=1.1e+02 Score=20.92 Aligned_cols=56 Identities=13% Similarity=0.025 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKI 85 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~ 85 (282)
.++++.+.+. +..+||++.|... .....+.......++|++...|+ ..++-..++.
T Consensus 28 ~~v~kai~~g-kaklVilA~D~~~---------~~~~~i~~~c~~~~ip~~~~~~s-------~~eLG~A~Gk 83 (105)
T 3u5e_c 28 KSTVKSLRQG-KSKLIIIAANTPV---------LRKSELEYYAMLSKTKVYYFQGG-------NNELGTAVGK 83 (105)
T ss_dssp HHHHHHHHTT-CCSEEEECTTSCH---------HHHHHHHHHHHHHTCEEEECSSC-------HHHHHHHTTC
T ss_pred HHHHHHHHcC-CceEEEEeCCCCH---------HHHHHHHHHHHHcCCCEEEeCCC-------HHHHHHHhCC
Confidence 4556666666 8999999999852 23344444445557899743443 3356666654
No 96
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=30.37 E-value=41 Score=23.70 Aligned_cols=48 Identities=13% Similarity=0.011 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 14 NAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 14 ~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
++.+.+.+. +..+||++.|... ..-.. .+.......++|+++++.+-+
T Consensus 34 ~v~kal~~g-ka~lViiA~D~~~-----~~~~~---~l~~lc~~~~Vp~~~~~sk~e 81 (119)
T 1rlg_A 34 ETTKAVERG-LAKLVYIAEDVDP-----PEIVA---HLPLLCEEKNVPYIYVKSKND 81 (119)
T ss_dssp HHHHHHTTT-CCSEEEEESCCSC-----STTTT---HHHHHHHHHTCCEEEESCHHH
T ss_pred HHHHHHHcC-CCcEEEEeCCCCh-----HHHHH---HHHHHHHHcCCCEEEeCCHHH
Confidence 344555555 7899999999974 11122 333344456789877754433
No 97
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=30.06 E-value=53 Score=23.32 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 14 NAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 14 ~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
++++.+.+. +..+||++.|... .. ....+.......++|+.++.++-+
T Consensus 38 ~v~kai~~g-ka~lViiA~D~~p-----~~---~~~~l~~lc~~~~VP~~~v~sk~e 85 (122)
T 3o85_A 38 EALKQVNRG-KAELVIIAADADP-----IE---IVLHLPLACEDKGVPYVFIGSKNA 85 (122)
T ss_dssp HHHHHHHTT-CCSEEEEETTCSS-----GG---GGTTHHHHHHTTTCCEEEESCHHH
T ss_pred HHHHHHHcC-CceEEEEeCCCCh-----HH---HHHHHHHHHHHhCCCEEEECCHHH
Confidence 445555555 8999999999974 11 112333444566789877765433
No 98
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=29.06 E-value=80 Score=24.99 Aligned_cols=39 Identities=8% Similarity=-0.046 Sum_probs=27.5
Q ss_pred HHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecC
Q 023422 16 VQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 16 ~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 67 (282)
++.+... +||+||..+... . ....+.|+++++|++.+..
T Consensus 52 ~E~i~~l-~PDlIi~~~~~~--------~----~~~~~~L~~~gipvv~~~~ 90 (255)
T 3md9_A 52 AEGILAM-KPTMLLVSELAQ--------P----SLVLTQIASSGVNVVTVPG 90 (255)
T ss_dssp HHHHHTT-CCSEEEEETTCS--------C----HHHHHHHHHTTCEEEEECC
T ss_pred HHHHHcc-CCCEEEEcCCcC--------c----hhHHHHHHHcCCcEEEeCC
Confidence 5666777 999998765432 1 2445677788899999864
No 99
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=29.00 E-value=72 Score=26.40 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=28.3
Q ss_pred HHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCC
Q 023422 16 VQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNH 69 (282)
Q Consensus 16 ~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNH 69 (282)
++.+... +||+||..+.. . ....+.|+++++|++.+....
T Consensus 77 ~E~i~~l-~PDlIi~~~~~-~------------~~~~~~L~~~Gipvv~~~~~~ 116 (326)
T 3psh_A 77 IESLLAL-KPDVVFVTNYA-P------------SEMIKQISDVNIPVVAISLRT 116 (326)
T ss_dssp HHHHHHT-CCSEEEEETTC-C------------HHHHHHHHTTTCCEEEECSCC
T ss_pred HHHHHcc-CCCEEEEeCCC-C------------hHHHHHHHHcCCCEEEEeccc
Confidence 4566667 89999876421 1 245677888899999997654
No 100
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=28.89 E-value=74 Score=23.94 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d 36 (282)
.+..+.+.++++.+.+..+.|+||.+|=+.-
T Consensus 51 ~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~ 81 (172)
T 1mkz_A 51 KENRYAIRAQVSAWIASDDVQVVLITGGTGL 81 (172)
T ss_dssp CSCHHHHHHHHHHHHHSSSCCEEEEESCCSS
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 4556778888887765424899999998764
No 101
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=28.72 E-value=62 Score=24.87 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d 36 (282)
.+..+.+.++++.+... +.|+||.+|=..-
T Consensus 72 ~Dd~~~I~~al~~a~~~-~~DlVIttGGts~ 101 (185)
T 3rfq_A 72 EADEVDIRNALNTAVIG-GVDLVVSVGGTGV 101 (185)
T ss_dssp CSCHHHHHHHHHHHHHT-TCSEEEEESCCSS
T ss_pred CCCHHHHHHHHHHHHhC-CCCEEEECCCCCC
Confidence 44567788888776544 6899999998874
No 102
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=28.50 E-value=1.4e+02 Score=22.94 Aligned_cols=31 Identities=6% Similarity=0.124 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHhhcCCccEEEEcCCCCC
Q 023422 6 RHSLLVLQNAVQRWNNHQKLKFVIHFGDIVD 36 (282)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~d~vi~~GDi~d 36 (282)
.+..+.+.++++.+....+.|+||.+|=..-
T Consensus 48 ~Dd~~~I~~al~~a~~~~~~DlVitTGGtg~ 78 (195)
T 1di6_A 48 PDEQAIIEQTLCELVDEMSCHLVLTTGGTGP 78 (195)
T ss_dssp ESCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 3456778888887766326899999998873
No 103
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=28.15 E-value=1.2e+02 Score=19.65 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=27.8
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh----cCCCEEEecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK----FNGPAYHMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~----~~~pv~~v~GNHD~ 71 (282)
..+++.+.+. .+|++++--++.+ ....+ +.+.++. ..+|++++.+..+.
T Consensus 35 ~~~~~~l~~~-~~dlii~d~~~~~-----~~~~~----~~~~l~~~~~~~~~~ii~~~~~~~~ 87 (119)
T 2j48_A 35 STALDQLDLL-QPIVILMAWPPPD-----QSCLL----LLQHLREHQADPHPPLVLFLGEPPV 87 (119)
T ss_dssp HHHHHHHHHH-CCSEEEEECSTTC-----CTHHH----HHHHHHHTCCCSSCCCEEEESSCCS
T ss_pred HHHHHHHHhc-CCCEEEEecCCCC-----CCHHH----HHHHHHhccccCCCCEEEEeCCCCc
Confidence 3445555556 7899888666543 11222 3333333 34789888877664
No 104
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=28.00 E-value=1.2e+02 Score=25.74 Aligned_cols=61 Identities=10% Similarity=0.023 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhcCCccEEEEc-C-CCCCCC--CCCcccHHHHHHHHHHHHhcCCCEEEec-CCCC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHF-G-DIVDGF--CPKDQSLEAVKKVVNEFEKFNGPAYHMI-GNHC 70 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~-G-Di~d~~--~~~~~~~~~~~~~~~~l~~~~~pv~~v~-GNHD 70 (282)
+..+++++..+.+- +||+||+. | |...++ ..-.-+.+.+..+.+.+..++.|+.++. |-.+
T Consensus 259 ~~~~~~~l~~l~~f-~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~~~~~v~vleGGY~ 324 (341)
T 3q9b_A 259 GEALTDSLKRIAAF-GAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLVVMEGGYG 324 (341)
T ss_dssp HHHHHHHHHHHHHH-TCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHTTSSCEEEEECCCCC
T ss_pred HHHHHHHHHHHHhh-CCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence 45667777777666 88887653 2 333322 1123456777788888888888877655 4433
No 105
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=26.53 E-value=1.2e+02 Score=20.37 Aligned_cols=53 Identities=13% Similarity=-0.001 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
..+++.+.+. .||+||+-=++-+ ....+..+.+.+......+|++++.+..+.
T Consensus 37 ~~a~~~l~~~-~~dlii~D~~l~~-----~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~ 89 (127)
T 3i42_A 37 TDALHAMSTR-GYDAVFIDLNLPD-----TSGLALVKQLRALPMEKTSKFVAVSGFAKN 89 (127)
T ss_dssp HHHHHHHHHS-CCSEEEEESBCSS-----SBHHHHHHHHHHSCCSSCCEEEEEECC-CT
T ss_pred HHHHHHHHhc-CCCEEEEeCCCCC-----CCHHHHHHHHHhhhccCCCCEEEEECCcch
Confidence 4455556666 7999888666653 122232333222111223689888887765
No 106
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=26.30 E-value=95 Score=24.53 Aligned_cols=39 Identities=10% Similarity=0.046 Sum_probs=26.8
Q ss_pred HHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecC
Q 023422 16 VQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 16 ~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 67 (282)
++.+... +||+||..+... . ....+.|+++++|++.+..
T Consensus 52 ~E~i~~l-~PDLIi~~~~~~--------~----~~~~~~L~~~gipvv~~~~ 90 (256)
T 2r7a_A 52 SEGILSL-RPDSVITWQDAG--------P----QIVLDQLRAQKVNVVTLPR 90 (256)
T ss_dssp HHHHHTT-CCSEEEEETTCS--------C----HHHHHHHHHTTCEEEEECC
T ss_pred HHHHHcc-CCCEEEEcCCCC--------C----HHHHHHHHHcCCcEEEecC
Confidence 4666677 899999765322 1 2455677788889988864
No 107
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=26.22 E-value=51 Score=27.01 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=32.1
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
..++..+... +..+||+++|... . +....+-..+...++|++++.++-+
T Consensus 141 keV~KaIekg-kAkLVIIA~DasP-----~---ei~~~Lp~LC~~~~VPyi~v~sk~e 189 (266)
T 2zkr_f 141 NTVTTLVENK-KAQLVVIAHDVDP-----I---ELVVFLPALCRKMGVPYCIIKGKAR 189 (266)
T ss_dssp HHHHHHHHTT-CCSEEEEESCCSS-----S---TTTTHHHHHHHHHTCCEEEESCHHH
T ss_pred HHHHHHHHhC-CceEEEEecCCCH-----H---HHHHHHHHHHHhcCCCEEEECCHHH
Confidence 3456666666 8999999999974 1 1112333455566899999866544
No 108
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=26.02 E-value=1.1e+02 Score=24.74 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=26.7
Q ss_pred HHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecC
Q 023422 16 VQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 16 ~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 67 (282)
++.+... +||+||..+... . ....+.|+++++|++.+..
T Consensus 52 ~E~i~~l-~PDLIi~~~~~~--------~----~~~~~~L~~~gipvv~~~~ 90 (283)
T 2r79_A 52 AEGVLAL-RPDILIGTEEMG--------P----PPVLKQLEGAGVRVETLSA 90 (283)
T ss_dssp HHHHHTT-CCSEEEECTTCC--------C----HHHHHHHHHTTCCEEECCC
T ss_pred HHHHHhc-CCCEEEEeCccC--------c----HHHHHHHHHcCCcEEEecC
Confidence 4666677 899999765322 1 2455677788889998864
No 109
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=25.79 E-value=1.5e+02 Score=19.69 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=27.2
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh-cCCCEEEecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK-FNGPAYHMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~-~~~pv~~v~GNHD~ 71 (282)
..+++.+.+. .||++++-=.+-+ ....+ +.+.+++ ..+|++++.|..+.
T Consensus 36 ~~al~~~~~~-~~dlii~D~~~p~-----~~g~~----~~~~lr~~~~~~ii~~t~~~~~ 85 (120)
T 3f6p_A 36 NEAVEMVEEL-QPDLILLDIMLPN-----KDGVE----VCREVRKKYDMPIIMLTAKDSE 85 (120)
T ss_dssp HHHHHHHHTT-CCSEEEEETTSTT-----THHHH----HHHHHHTTCCSCEEEEEESSCH
T ss_pred HHHHHHHhhC-CCCEEEEeCCCCC-----CCHHH----HHHHHHhcCCCCEEEEECCCCh
Confidence 3455555666 7898888433332 11222 2233333 35799999887663
No 110
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=25.17 E-value=1.6e+02 Score=20.69 Aligned_cols=52 Identities=8% Similarity=-0.066 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
..+++.+.+. .||+||+-=++-+ ....+..+.+.+.-....+|++++.+..+
T Consensus 41 ~~al~~l~~~-~~dlii~D~~l~~-----~~g~~~~~~lr~~~~~~~~pii~~s~~~~ 92 (154)
T 3gt7_A 41 REAVRFLSLT-RPDLIISDVLMPE-----MDGYALCRWLKGQPDLRTIPVILLTILSD 92 (154)
T ss_dssp HHHHHHHTTC-CCSEEEEESCCSS-----SCHHHHHHHHHHSTTTTTSCEEEEECCCS
T ss_pred HHHHHHHHhC-CCCEEEEeCCCCC-----CCHHHHHHHHHhCCCcCCCCEEEEECCCC
Confidence 4455556666 7999888655543 12223232222211113479999988665
No 111
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=25.14 E-value=1.4e+02 Score=19.98 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=26.7
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh----cCCCEEEecCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK----FNGPAYHMIGNHC 70 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~----~~~pv~~v~GNHD 70 (282)
..+++.+.+. .||++++-=.+-+ ....+ +++.+++ ..+|++++.|+.+
T Consensus 36 ~~al~~l~~~-~~dlvllD~~~p~-----~~g~~----~~~~l~~~~~~~~~pii~~s~~~~ 87 (122)
T 3gl9_A 36 QIALEKLSEF-TPDLIVLXIMMPV-----MDGFT----VLKKLQEKEEWKRIPVIVLTAKGG 87 (122)
T ss_dssp HHHHHHHTTB-CCSEEEECSCCSS-----SCHHH----HHHHHHTSTTTTTSCEEEEESCCS
T ss_pred HHHHHHHHhc-CCCEEEEeccCCC-----CcHHH----HHHHHHhcccccCCCEEEEecCCc
Confidence 3455556666 7898887333322 11222 3333332 2479999988665
No 112
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=24.80 E-value=1.7e+02 Score=19.99 Aligned_cols=53 Identities=11% Similarity=-0.026 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 71 (282)
..+++.+.+. .||+|++-=.+-+ ....+..+.+.+.-....+|++++.|..+.
T Consensus 38 ~~al~~~~~~-~~dlvl~D~~lp~-----~~g~~~~~~lr~~~~~~~~pii~~t~~~~~ 90 (136)
T 3t6k_A 38 EEALQQIYKN-LPDALICDVLLPG-----IDGYTLCKRVRQHPLTKTLPILMLTAQGDI 90 (136)
T ss_dssp HHHHHHHHHS-CCSEEEEESCCSS-----SCHHHHHHHHHHSGGGTTCCEEEEECTTCH
T ss_pred HHHHHHHHhC-CCCEEEEeCCCCC-----CCHHHHHHHHHcCCCcCCccEEEEecCCCH
Confidence 3455555666 7899888444332 122333333322111224799999987663
No 113
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=24.66 E-value=1.3e+02 Score=20.57 Aligned_cols=48 Identities=15% Similarity=0.031 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh----cCCCEEEecCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK----FNGPAYHMIGNHC 70 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~----~~~pv~~v~GNHD 70 (282)
..+++.+.+. .+|+||+--++-+ ....+ +++.++. ..+|++++.+..+
T Consensus 44 ~~a~~~l~~~-~~dlii~d~~l~~-----~~g~~----~~~~l~~~~~~~~~~ii~~s~~~~ 95 (143)
T 3cnb_A 44 FDAGDLLHTV-KPDVVMLDLMMVG-----MDGFS----ICHRIKSTPATANIIVIAMTGALT 95 (143)
T ss_dssp HHHHHHHHHT-CCSEEEEETTCTT-----SCHHH----HHHHHHTSTTTTTSEEEEEESSCC
T ss_pred HHHHHHHHhc-CCCEEEEecccCC-----CcHHH----HHHHHHhCccccCCcEEEEeCCCC
Confidence 3455555566 7899888766653 12222 3334433 2368888887665
No 114
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=24.25 E-value=1.4e+02 Score=20.60 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh----cCCCEEEecCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK----FNGPAYHMIGNHC 70 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~----~~~pv~~v~GNHD 70 (282)
..+++.+.+. .+|+||+--++.+ .... .+++.++. ..+|++++.+..+
T Consensus 42 ~~a~~~l~~~-~~dlii~d~~l~~-----~~g~----~~~~~l~~~~~~~~~pii~ls~~~~ 93 (147)
T 2zay_A 42 IEAVPVAVKT-HPHLIITEANMPK-----ISGM----DLFNSLKKNPQTASIPVIALSGRAT 93 (147)
T ss_dssp HHHHHHHHHH-CCSEEEEESCCSS-----SCHH----HHHHHHHTSTTTTTSCEEEEESSCC
T ss_pred HHHHHHHHcC-CCCEEEEcCCCCC-----CCHH----HHHHHHHcCcccCCCCEEEEeCCCC
Confidence 3445555556 7899988666543 1122 23334443 2479999888765
No 115
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=24.15 E-value=2.7e+02 Score=22.12 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=18.9
Q ss_pred CccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEe
Q 023422 24 KLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHM 65 (282)
Q Consensus 24 ~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v 65 (282)
.||+||++.=.-+ ..+......+++|++.+
T Consensus 157 ~Pdll~v~Dp~~e------------~~ai~EA~~l~IPvIai 186 (231)
T 3bbn_B 157 LPDIVIIVDQQEE------------YTALRECITLGIPTICL 186 (231)
T ss_dssp CCSEEEESCTTTT------------HHHHHHHHTTTCCEEEC
T ss_pred CCCEEEEeCCccc------------cHHHHHHHHhCCCEEEE
Confidence 4899988732221 24556667778887654
No 116
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.00 E-value=1.7e+02 Score=19.69 Aligned_cols=52 Identities=6% Similarity=0.049 Sum_probs=28.5
Q ss_pred HHHHHHHhh-------cCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 13 QNAVQRWNN-------HQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 13 ~~~~~~~~~-------~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
..+++.+.+ . .+|+|++--++-+ ....+..+.+.+......+|++++.+..+
T Consensus 38 ~~a~~~l~~~~~~~~~~-~~dlvi~d~~~~~-----~~g~~~~~~l~~~~~~~~~pii~ls~~~~ 96 (140)
T 1k68_A 38 MEAMAYLRQEGEYANAS-RPDLILLXLNLPK-----KDGREVLAEIKSDPTLKRIPVVVLSTSIN 96 (140)
T ss_dssp HHHHHHHTTCGGGGSCC-CCSEEEECSSCSS-----SCHHHHHHHHHHSTTGGGSCEEEEESCCC
T ss_pred HHHHHHHHcccccccCC-CCcEEEEecCCCc-----ccHHHHHHHHHcCcccccccEEEEecCCc
Confidence 344555554 4 7899888666653 12233333333221113479999888765
No 117
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=23.91 E-value=1.5e+02 Score=25.36 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 67 (282)
...+.++.+.+.+. +||+|+..||... .+... ......++|++.+-+
T Consensus 97 ~~~~~~l~~~l~~~-kPDvVi~~g~~~~----------~~~~~-~aa~~~~IPv~h~~a 143 (396)
T 3dzc_A 97 SKILLGMQQVLSSE-QPDVVLVHGDTAT----------TFAAS-LAAYYQQIPVGHVEA 143 (396)
T ss_dssp HHHHHHHHHHHHHH-CCSEEEEETTSHH----------HHHHH-HHHHTTTCCEEEETC
T ss_pred HHHHHHHHHHHHhc-CCCEEEEECCchh----------HHHHH-HHHHHhCCCEEEEEC
Confidence 34455555666677 9999999999862 11111 123346789877644
No 118
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=23.68 E-value=98 Score=20.57 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCccEEEEcCCCC-CCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIV-DGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~-d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
..+++.+.+. .+|++++--++. + ....+..+.+.+......+|++++ +..+
T Consensus 39 ~~a~~~~~~~-~~dlvi~d~~~~~~-----~~g~~~~~~l~~~~~~~~~~ii~~-~~~~ 90 (127)
T 2gkg_A 39 KGSVEQIRRD-RPDLVVLAVDLSAG-----QNGYLICGKLKKDDDLKNVPIVII-GNPD 90 (127)
T ss_dssp HHHHHHHHHH-CCSEEEEESBCGGG-----CBHHHHHHHHHHSTTTTTSCEEEE-ECGG
T ss_pred HHHHHHHHhc-CCCEEEEeCCCCCC-----CCHHHHHHHHhcCccccCCCEEEE-ecCC
Confidence 3445555556 789988865554 2 122233333222211234799998 7655
No 119
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=23.62 E-value=1.3e+02 Score=23.62 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=25.0
Q ss_pred HHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEec
Q 023422 16 VQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMI 66 (282)
Q Consensus 16 ~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~ 66 (282)
++.+... +||+||....-. . ....+.|+++++|++.+.
T Consensus 50 ~E~i~~l-~PDLIi~~~~~~--------~----~~~~~~L~~~gipvv~~~ 87 (245)
T 1n2z_A 50 LERIVAL-KPDLVIAWRGGN--------A----ERQVDQLASLGIKVMWVD 87 (245)
T ss_dssp HHHHHHT-CCSEEEECTTTS--------C----HHHHHHHHHHTCCEEECC
T ss_pred HHHHhcc-CCCEEEEeCCCC--------c----HHHHHHHHHCCCcEEEeC
Confidence 4666677 899998743211 1 245567777888998774
No 120
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12
Probab=23.60 E-value=2.8e+02 Score=22.01 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCC
Q 023422 11 VLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLY 72 (282)
Q Consensus 11 ~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 72 (282)
....+++.+.+. +++.+|+.|- + .+..+.+.+..++.+ .++...|=|-..
T Consensus 28 ~~~~~l~~~~~~-GV~~~v~~~~--~--------~~~~~~~~~l~~~~p-~i~~~~G~hP~~ 77 (268)
T 1j6o_A 28 DRNAVISSFEEN-NIEFVVNVGV--N--------LEDSKKSLDLSKTSD-RIFCSVGVHPHD 77 (268)
T ss_dssp THHHHHHTTTTT-TEEEEEEECS--S--------HHHHHHHHHHHTTCT-TEEEEECCCGGG
T ss_pred CHHHHHHHHHHc-CCCEEEEeCC--C--------HHHHHHHHHHHHHCC-CEEEEEeecccc
Confidence 455667777776 7888888762 1 234555665555554 488888988753
No 121
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=23.48 E-value=97 Score=24.68 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh-cCCCEEEecCCC
Q 023422 8 SLLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK-FNGPAYHMIGNH 69 (282)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~-~~~pv~~v~GNH 69 (282)
+++.+.++++.+.+.+.+..|++.|+-. |. .......+...++.++. .+.||++..+.+
T Consensus 30 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~-Gg--~~~~~~~i~~~l~~~~~~~~kPVia~v~g~ 89 (240)
T 3rst_A 30 NHRTFLKNLERAKDDKTVKGIVLKVNSP-GG--GVYESAEIHKKLEEIKKETKKPIYVSMGSM 89 (240)
T ss_dssp CHHHHHHHHHHHHHCTTEEEEEEEEEEC-CB--CHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEEecCC-CC--CHHHHHHHHHHHHHHHHhCCCeEEEEECCe
Confidence 3567778888887765788899988843 11 01122233334444544 678998866533
No 122
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=23.19 E-value=2.5e+02 Score=22.33 Aligned_cols=49 Identities=8% Similarity=0.169 Sum_probs=34.4
Q ss_pred HHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 14 NAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 14 ~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
++++.+.+. ..|++.+.| .+| .+.+....+.+.+++..+|++..+++++
T Consensus 24 ~~~~~l~~~-GaD~IelG~--S~g-----~t~~~~~~~v~~ir~~~~Pivl~~y~~n 72 (234)
T 2f6u_A 24 EIIKAVADS-GTDAVMISG--TQN-----VTYEKARTLIEKVSQYGLPIVVEPSDPS 72 (234)
T ss_dssp HHHHHHHTT-TCSEEEECC--CTT-----CCHHHHHHHHHHHTTSCCCEEECCSSCC
T ss_pred HHHHHHHHc-CCCEEEECC--CCC-----CCHHHHHHHHHHhcCCCCCEEEecCCcc
Confidence 345666776 899999999 432 3455555666666665689999999954
No 123
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=22.84 E-value=1.4e+02 Score=25.68 Aligned_cols=47 Identities=13% Similarity=-0.038 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecC
Q 023422 9 LLVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 9 ~~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 67 (282)
...+.++.+.+.+. +||+|++.||... . +... ......++|++.+-|
T Consensus 100 ~~~~~~l~~~l~~~-kPD~Vi~~gd~~~-------~---l~~~-laA~~~~IPv~h~~a 146 (403)
T 3ot5_A 100 SRVMNGINEVIAAE-NPDIVLVHGDTTT-------S---FAAG-LATFYQQKMLGHVEA 146 (403)
T ss_dssp HHHHHHHHHHHHHH-CCSEEEEETTCHH-------H---HHHH-HHHHHTTCEEEEESC
T ss_pred HHHHHHHHHHHHHc-CCCEEEEECCchh-------H---HHHH-HHHHHhCCCEEEEEC
Confidence 34455556666677 9999999999762 1 1111 122346789877654
No 124
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=22.27 E-value=1.4e+02 Score=20.62 Aligned_cols=17 Identities=12% Similarity=0.102 Sum_probs=9.0
Q ss_pred HHHHHHhcCCCEEEecC
Q 023422 51 VVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 51 ~~~~l~~~~~pv~~v~G 67 (282)
+.+.+.+.++++-.+||
T Consensus 100 l~~~~~~~gi~v~viPG 116 (117)
T 3hh1_A 100 MASAAHAAGLPVVPVPG 116 (117)
T ss_dssp HHHHHHHTTCCEEEEC-
T ss_pred HHHHHHHCCCcEEEeCC
Confidence 33444445567777776
No 125
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=21.91 E-value=1.7e+02 Score=19.85 Aligned_cols=52 Identities=6% Similarity=0.013 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHC 70 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 70 (282)
..+++.+.+. .+|+||+-=++-+ ....+..+.+.+.-....+|++++.+..+
T Consensus 40 ~~a~~~l~~~-~~dlvi~d~~l~~-----~~g~~~~~~l~~~~~~~~~~ii~~s~~~~ 91 (140)
T 3grc_A 40 AQALEQVARR-PYAAMTVDLNLPD-----QDGVSLIRALRRDSRTRDLAIVVVSANAR 91 (140)
T ss_dssp HHHHHHHHHS-CCSEEEECSCCSS-----SCHHHHHHHHHTSGGGTTCEEEEECTTHH
T ss_pred HHHHHHHHhC-CCCEEEEeCCCCC-----CCHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 3455555666 7898888544432 12223333322211123478888887654
No 126
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=21.45 E-value=2.2e+02 Score=20.09 Aligned_cols=56 Identities=13% Similarity=-0.044 Sum_probs=32.4
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKI 85 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~ 85 (282)
.++++.+.+. +..+||++.|... .....+........+||++..| +..++-..++.
T Consensus 33 ~~v~kaIr~g-kakLVIiA~Das~---------~~~~ki~~~~~~~~~~V~~~~~-------sk~eLG~A~Gk 88 (125)
T 3vi6_A 33 KQTLKMIRQG-KAKLVILANNCPA---------LRKSEIEYYAMLAKTGVHHYSG-------NNIELGTACGK 88 (125)
T ss_dssp HHHHHHHHTT-CCSEEEECTTSCH---------HHHHHHHHHHHHTTCEEEECSS-------CHHHHHHHTTC
T ss_pred HHHHHHHHcC-CceEEEEeCCCCH---------HHHHHHHHHHHHhCCCcEEEcC-------CHHHHHHHhCC
Confidence 4556666666 8999999999973 2222332222233457655444 34466666664
No 127
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=21.42 E-value=1.5e+02 Score=23.24 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=10.5
Q ss_pred HHHHHHHhcCCCEEEe
Q 023422 50 KVVNEFEKFNGPAYHM 65 (282)
Q Consensus 50 ~~~~~l~~~~~pv~~v 65 (282)
.+......+++|++.+
T Consensus 129 ~ai~EA~~l~IPvIal 144 (208)
T 1vi6_A 129 QAVSEATAVGIPVVAL 144 (208)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHhCCCEEEE
Confidence 4555666778888554
No 128
>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A*
Probab=21.37 E-value=4.3e+02 Score=23.37 Aligned_cols=66 Identities=11% Similarity=0.088 Sum_probs=43.6
Q ss_pred cCCCCCCcchHHHHHHhhhcCCC----CCCCCCCCcccccccccccCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEe
Q 023422 115 IGWPHNHPNTLEALKFLGEKNPN----TEKNSPAGLVGLERRFLMFNGAVGKEQIKWLDAVLQDATKLNQKVVVCCH 187 (282)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~il~~H 187 (282)
+|.|++...+....+++...+-+ ..+.+| |++. .|....++++++.|.+..+.+.+.+-..+...|
T Consensus 10 YG~PWS~e~R~~l~~f~g~~kmNtYiYAPKDDp-----yhr~--~WRe~Yp~eel~~l~eLv~~a~~~~V~Fv~ais 79 (447)
T 2xsa_A 10 YGRDWRRDERATVMDWIAAAGMNTYIYGPKDDV-----HVRA--RWRVPYDAAGLARLTELRDAAAARGMVFYVSLA 79 (447)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCT-----TTTT--TTTSCCCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceEEEccCCCh-----HHHH--hhcccCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 47777776666667777654433 334444 4443 677888999999999988888655444444445
No 129
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=21.35 E-value=1.4e+02 Score=22.70 Aligned_cols=52 Identities=10% Similarity=-0.004 Sum_probs=23.4
Q ss_pred HHHHHHHHhhcCCccEEEEcC---CCCCCCCCC--cccHHHHHHHHHHHHhcCCCEEE
Q 023422 12 LQNAVQRWNNHQKLKFVIHFG---DIVDGFCPK--DQSLEAVKKVVNEFEKFNGPAYH 64 (282)
Q Consensus 12 l~~~~~~~~~~~~~d~vi~~G---Di~d~~~~~--~~~~~~~~~~~~~l~~~~~pv~~ 64 (282)
+.++-+.+... +||.|++.. |+..+.... ....+.+..+.+.++..+++++.
T Consensus 67 l~r~~~~v~~~-~Pd~vvi~~G~ND~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~iil 123 (209)
T 4hf7_A 67 LLRFREDVINL-SPALVVINAGTNDVAENTGAYNEDYTFGNIASMAELAKANKIKVIL 123 (209)
T ss_dssp HHHHHHHTGGG-CCSEEEECCCHHHHTTSSSSCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhc-CCCEEEEEeCCCcCccccccccHHHHHHHHHHhhHHHhccCceEEE
Confidence 33333334445 778766654 554322111 11223344444555554555554
No 130
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=20.96 E-value=2e+02 Score=19.41 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecCCCCCCCCChhhhhhhhcC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIGNHCLYNLPRHMLLPLLKI 85 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~l~~ 85 (282)
.++++.+.+. +..+||++.|... .....+.......++|++...| +..++-..++.
T Consensus 28 ~~v~kai~~g-kaklViiA~D~~~---------~~~~~i~~~c~~~~ip~~~~~~-------s~~eLG~a~Gk 83 (104)
T 4a18_G 28 KSTIKAIRNG-TAKLVFISNNCPT---------VRKSEIEYYASLAQISIHHFVG-------SNVELGTACGK 83 (104)
T ss_dssp HHHHHHHHHT-CCCEEEECTTSCH---------HHHHHHHHHHHHHTCEEEECSS-------CHHHHHHHTTC
T ss_pred HHHHHHHHcC-CceEEEEeCCCCH---------HHHHHHHHHHHHcCCcEEEecC-------CHHHHHHHhCC
Confidence 4555666666 8999999999863 2233333334445789874233 23345556653
No 131
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=20.94 E-value=1.3e+02 Score=24.17 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=10.0
Q ss_pred HHHHHHHhcCCCEEE
Q 023422 50 KVVNEFEKFNGPAYH 64 (282)
Q Consensus 50 ~~~~~l~~~~~pv~~ 64 (282)
.+......+++|++.
T Consensus 128 ~ai~EA~~l~IPvIa 142 (241)
T 2xzm_B 128 QAIKEASYVNIPVIA 142 (241)
T ss_dssp HHHHHHTTTTCCEEE
T ss_pred HHHHHHHHhCCCEEE
Confidence 455666677888754
No 132
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.78 E-value=1.3e+02 Score=25.10 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=9.7
Q ss_pred HHHHHHHhcCCCEEE
Q 023422 50 KVVNEFEKFNGPAYH 64 (282)
Q Consensus 50 ~~~~~l~~~~~pv~~ 64 (282)
.+......+++|++.
T Consensus 132 ~AI~EA~~lgIPvIa 146 (295)
T 2zkq_b 132 QPLTEASYVNLPTIA 146 (295)
T ss_dssp HHHHHHHHHTCCEEE
T ss_pred hHHHHHHHhCCCEEE
Confidence 455566667788743
No 133
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=20.58 E-value=1.4e+02 Score=20.57 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHh----cCCCEEEecCCCCC
Q 023422 13 QNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEK----FNGPAYHMIGNHCL 71 (282)
Q Consensus 13 ~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~----~~~pv~~v~GNHD~ 71 (282)
..+++.+.+. .+|+||+-=++-+ .... .+++.+++ ..+|++++.+..+.
T Consensus 41 ~~a~~~l~~~-~~dlii~D~~l~~-----~~g~----~~~~~lr~~~~~~~~pii~~s~~~~~ 93 (144)
T 3kht_A 41 AKALYQVQQA-KYDLIILDIGLPI-----ANGF----EVMSAVRKPGANQHTPIVILTDNVSD 93 (144)
T ss_dssp HHHHHHHTTC-CCSEEEECTTCGG-----GCHH----HHHHHHHSSSTTTTCCEEEEETTCCH
T ss_pred HHHHHHhhcC-CCCEEEEeCCCCC-----CCHH----HHHHHHHhcccccCCCEEEEeCCCCH
Confidence 4455555565 7898888444432 1122 23334443 23799999886653
No 134
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=20.35 E-value=1.8e+02 Score=23.57 Aligned_cols=45 Identities=7% Similarity=-0.003 Sum_probs=25.6
Q ss_pred eEEEEEeeCCCCCCCCCcccccC-HHHHHHHHHccCcEEEEEeCcccCC
Q 023422 181 KVVVCCHVPLDPGSASPEALLWN-CNEVMDVIHRYNCVKVCLAGHDHQG 228 (282)
Q Consensus 181 ~~il~~H~p~~~~~~~~~~~~~~-~~~~~~~l~~~~~v~~~~~GH~H~~ 228 (282)
--+|++|||+.-... ....... ..+....|.+++ + .+++-||...
T Consensus 60 adlIitHHP~~f~~~-~~~~~~~~~~~~i~~li~~~-I-~lya~Ht~lD 105 (267)
T 2fyw_A 60 VDLIIVKHAPIFRPI-KDLLASRPQNQIYIDLIKHD-I-AVYVSHTNID 105 (267)
T ss_dssp CSEEEESSCSCCSCC-CCCCTTSHHHHHHHHHHHTT-C-EEEECSHHHH
T ss_pred CCEEEECCccccCCc-cccccCchHHHHHHHHHHCC-C-eEEEeecccc
Confidence 347789999864321 1111122 245556666665 4 6777888765
No 135
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=20.31 E-value=1.6e+02 Score=23.90 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=10.4
Q ss_pred HHHHHHHhcCCCEEEe
Q 023422 50 KVVNEFEKFNGPAYHM 65 (282)
Q Consensus 50 ~~~~~l~~~~~pv~~v 65 (282)
.+......+++|++.+
T Consensus 165 ~AI~EA~~lgIPvIal 180 (253)
T 3bch_A 165 QPLTEASYVNLPTIAL 180 (253)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHhCCCEEEE
Confidence 4556666778887543
No 136
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=20.10 E-value=2.1e+02 Score=22.71 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhcCCccEEEEcCCCCCCCCCCcccHHHHHHHHHHHHhcCCCEEEecC
Q 023422 10 LVLQNAVQRWNNHQKLKFVIHFGDIVDGFCPKDQSLEAVKKVVNEFEKFNGPAYHMIG 67 (282)
Q Consensus 10 ~~l~~~~~~~~~~~~~d~vi~~GDi~d~~~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 67 (282)
+.|..+++.+.+.++...++++|-+.-| + .....+.+++.++||+.+-.
T Consensus 131 ~~l~~av~av~~lpr~~~lvlags~mgg--------~-i~~~v~~~~~~~i~vi~l~m 179 (223)
T 1y7p_A 131 EEIAEAVKAVSRLHRAEVLVLAGGIMGG--------K-ITEEVKKLRKSGIRVISLSM 179 (223)
T ss_dssp HHHHHHHHHGGGSTTEEEEEEESSBCCT--------H-HHHHHHHHGGGTCEEEEESC
T ss_pred HHHHHHHHHHhhccccceeeEecccccc--------h-HHHHHHHHHHCCCeEEEecC
Confidence 4688889999999899999999999863 1 23334455555889988754
Done!