BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023423
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
Length = 455
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 61/124 (49%), Gaps = 16/124 (12%)
Query: 80 VRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGP 139
VRG+A E +TP I +FG + R R +P+ V +G+D RVSG
Sbjct: 10 VRGIANE-------KITPEFAMKIGMAFGTLLKRE---GRKKPL----VVVGRDTRVSGE 55
Query: 140 SLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFF 199
L A+ +GL GC V D+G+A TPA +T F D ++TASH P NG+K
Sbjct: 56 MLKEALISGLLSVGCDVIDVGIAPTPAVQWAT--KHFNADGGAVITASHNPPEYNGIKLL 113
Query: 200 TKKG 203
G
Sbjct: 114 EPNG 117
>pdb|3PDK|A Chain A, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
pdb|3PDK|B Chain B, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
Length = 469
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 64/128 (50%), Gaps = 18/128 (14%)
Query: 77 GSD-VRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPR 135
G+D VRGVA +LTP I FG +V L + RP KV +G+D R
Sbjct: 27 GTDGVRGVA-------NKELTPELAFKIGR-FGGYV---LTKDTDRP----KVIIGRDTR 71
Query: 136 VSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNG 195
+SG L A+ AGL G V +G+ +TP ++ L A +M++ASH P NG
Sbjct: 72 ISGHMLEGALVAGLLSTGAEVMRLGVISTPG--VAYLTKALDAQAGVMISASHNPVQDNG 129
Query: 196 LKFFTKKG 203
+KFF G
Sbjct: 130 IKFFGSDG 137
>pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
S108a Mutant From P. Aeruginosa
Length = 463
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTS 207
GL GC V D+G+ TP + + + + +M+T +H P NG K L +
Sbjct: 71 GLVDCGCQVSDVGMVPTPVLYYAANV--LEGKSGVMLTGAHNPPDYNGFKIVVAGETLAN 128
Query: 208 PVVEDICGEAARKFANRL-TKVSTVLRNPPTRVDFMSTYAKHLRDVI 253
E I R N L + V +V +VD + Y K +RD I
Sbjct: 129 ---EQIQALRERIEKNDLASGVGSV-----EQVDILPRYFKQIRDDI 167
>pdb|2FKM|X Chain X, Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisphosphate
Bound
Length = 462
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 14 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 69
Query: 148 GLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTS 207
GL GC V D+G+ TP + + + + +M+T H P NG K L +
Sbjct: 70 GLVDCGCQVSDVGMVPTPVLYYAANV--LEGKSGVMLTGDHNPPDYNGFKIVVAGETLAN 127
Query: 208 PVVEDICGEAARKFANRL-TKVSTVLRNPPTRVDFMSTYAKHLRDVI 253
E I R N L + V +V +VD + Y K +RD I
Sbjct: 128 ---EQIQALRERIEKNDLASGVGSV-----EQVDILPRYFKQIRDDI 166
>pdb|2FKF|A Chain A, PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMONAS
AERUGINOSA WITH Alpha-D-Glucose 1,6-Bisphosphate Bound
Length = 462
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 14 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 69
Query: 148 GLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTS 207
GL GC V D+G+ TP + + + + +M+T H P NG K L +
Sbjct: 70 GLVDCGCQVSDVGMVPTPVLYYAANV--LEGKSGVMLTGXHNPPDYNGFKIVVAGETLAN 127
Query: 208 PVVEDICGEAARKFANRL-TKVSTVLRNPPTRVDFMSTYAKHLRDVI 253
E I R N L + V +V +VD + Y K +RD I
Sbjct: 128 ---EQIQALRERIEKNDLASGVGSV-----EQVDILPRYFKQIRDDI 166
>pdb|2H4L|X Chain X, Complex Of PmmPGM WITH RIBOSE 1-Phosphate
pdb|2H5A|X Chain X, Complex Of The Enzyme PmmPGM WITH XYLOSE 1-Phosphate
Length = 463
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTS 207
GL GC V D+G+ TP + + + + +M+T H P NG K L +
Sbjct: 71 GLVDCGCQVSDVGMVPTPVLYYAANV--LEGKSGVMLTGXHNPPDYNGFKIVVAGETLAN 128
Query: 208 PVVEDICGEAARKFANRL-TKVSTVLRNPPTRVDFMSTYAKHLRDVI 253
E I R N L + V +V +VD + Y K +RD I
Sbjct: 129 ---EQIQALRERIEKNDLASGVGSV-----EQVDILPRYFKQIRDDI 167
>pdb|1P5D|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1P5G|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCJ|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCM|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
Length = 463
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTS 207
GL GC V D+G+ TP + + + + +M+T H P NG K L +
Sbjct: 71 GLVDCGCQVSDVGMVPTPVLYYAANV--LEGKSGVMLTGXHNPPDYNGFKIVVAGETLAN 128
Query: 208 PVVEDICGEAARKFANRL-TKVSTVLRNPPTRVDFMSTYAKHLRDVI 253
E I R N L + V +V +VD + Y K +RD I
Sbjct: 129 ---EQIQALRERIEKNDLASGVGSV-----EQVDILPRYFKQIRDDI 167
>pdb|3RSM|A Chain A, Crystal Structure Of S108c Mutant Of PmmPGM
Length = 463
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTS 207
GL GC V D+G+ TP + + + + +M+T H P NG K L +
Sbjct: 71 GLVDCGCQVSDVGMVPTPVLYYAANV--LEGKSGVMLTGCHNPPDYNGFKIVVAGETLAN 128
Query: 208 PVVEDICGEAARKFANRL-TKVSTVLRNPPTRVDFMSTYAKHLRDVI 253
E I R N L + V +V +VD + Y K +RD I
Sbjct: 129 ---EQIQALRERIEKNDLASGVGSV-----EQVDILPRYFKQIRDDI 167
>pdb|3BKQ|X Chain X, Structure Of The P368g Mutant Of PmmPGM IN COMPLEX WITH
ITS SUBSTRATE
pdb|3C04|A Chain A, Structure Of The P368g Mutant Of PmmPGM FROM P. AERUGINOSA
Length = 463
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTS 207
GL GC V D+G+ TP + + + + +M+T H P NG K L +
Sbjct: 71 GLVDCGCQVSDVGMVPTPVLYYAANV--LEGKSGVMLTGXHNPPDYNGFKIVVAGETLAN 128
Query: 208 PVVEDICGEAARKFANRL-TKVSTVLRNPPTRVDFMSTYAKHLRDVI 253
E I R N L + V +V +VD + Y K +RD I
Sbjct: 129 ---EQIQALRERIEKNDLASGVGSV-----EQVDILPRYFKQIRDDI 167
>pdb|1K35|A Chain A, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
From P.aeruginosa
Length = 463
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 18/167 (10%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTS 207
GL GC V D+G TP + + + + + +T H P NG K L +
Sbjct: 71 GLVDCGCQVSDVGXVPTPVLYYAANV--LEGKSGVXLTGXHNPPDYNGFKIVVAGETLAN 128
Query: 208 PVVEDICGEAARKFANRL-TKVSTVLRNPPTRVDFMSTYAKHLRDVI 253
E I R N L + V +V +VD + Y K +RD I
Sbjct: 129 ---EQIQALRERIEKNDLASGVGSV-----EQVDILPRYFKQIRDDI 167
>pdb|2F7L|A Chain A, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
pdb|2F7L|B Chain B, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
Length = 455
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTA 186
K+ +G+D R G L V GL G V+D G+A TPA + + YD +++TA
Sbjct: 39 KILVGRDVRAGGDMLVKIVEGGLLSVGVEVYDGGMAPTPA--LQYAVKTLGYDGGVVITA 96
Query: 187 SHLPYTRNGLKFFTKKG 203
SH P NG+K K G
Sbjct: 97 SHNPAPYNGIKVVDKDG 113
>pdb|3I3W|A Chain A, Structure Of A Phosphoglucosamine Mutase From Francisella
Tularensis
pdb|3I3W|B Chain B, Structure Of A Phosphoglucosamine Mutase From Francisella
Tularensis
Length = 443
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 112 IRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMST 171
+ SL N++ P V +G+D R SG L A+ +GL AG V D+G+ TP T
Sbjct: 31 VGSLINQKNYPK---FVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDLGVVPTPVVAFXT 87
Query: 172 LLPPFAYDASIMMTASHLPYTRNGLKFFTKKG 203
+ A A ++TA H +T NG+K F+ G
Sbjct: 88 VKHRAA--AGFVITAXHNKFTDNGIKLFSSNG 117
>pdb|4HJH|A Chain A, Iodide Sad Phased Crystal Structure Of A
Phosphoglucomutase From Brucella Melitensis Complexed
With Glucose-6-Phosphate
pdb|4HJH|B Chain B, Iodide Sad Phased Crystal Structure Of A
Phosphoglucomutase From Brucella Melitensis Complexed
With Glucose-6-Phosphate
Length = 481
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 87 GEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVF 146
G +G V+L A +F + + + ++G KV +G+D R S P ++
Sbjct: 16 GLRGLAVELNGLPAYAYTMAFVQMLAAKGQLQKGD-----KVFVGRDLRPSSPDIAALAM 70
Query: 147 AGLARAGCLVFDMGLATTPACFMSTLLPPFAYDA---SIMMTASHLPYTRNGLKFFTKKG 203
+ AG + G+ TPA L +A A SIM+T H+P RNGLKF+ + G
Sbjct: 71 GAIEDAGFTPVNCGVLPTPA------LSYYAMGAKAPSIMVTGXHIPDDRNGLKFYRRDG 124
>pdb|3UW2|A Chain A, X-Ray Crystal Structure Of
PhosphoglucomutasePHOSPHOMANNOMUTASE Family Protein
(Bth_i1489)from Burkholderia Thailandensis
Length = 485
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 22/141 (15%)
Query: 79 DVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSG 138
D+RGV G+T+D +I +FG V R V + +D R+SG
Sbjct: 32 DIRGVI-----GKTLD--ADVARSIGRAFGSEV---------RAQGGDAVVVARDGRLSG 75
Query: 139 PSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLP------PFAYDASIMMTASHLPYT 192
P L A+ GL AG V D+G+ TP + + +P D+ I++T SH P
Sbjct: 76 PELVGALADGLRAAGVDVVDVGMVPTPVGYFAASVPLALSGGERRVDSCIVVTGSHNPPD 135
Query: 193 RNGLKFFTKKGGLTSPVVEDI 213
NG K + + ++ +
Sbjct: 136 YNGFKMVLRGAAIYGDQIQGL 156
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 13 SNSSRTSFLSSPGPKCPKPFQITGLKLPFLSHSIKFTHVKSSVTDKYNEVVVDEEMDRIR 72
++S + F+ C K ++GL P + H+ H+ + + +V VD E +I
Sbjct: 55 TDSRKNPFVYKVETVCDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDGESVQIT 114
Query: 73 -RLQNGSDVRGVALEGEK-------GRTVDLTPSAVEAIAE----SFGEWVIRSL 115
+ G V GV G++ G TV+LT S E E + E+ R L
Sbjct: 115 IGIHTGEVVTGVI--GQRMPRYSLFGNTVNLT-SRTETTGEKGKINVSEYTYRCL 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,075,086
Number of Sequences: 62578
Number of extensions: 310683
Number of successful extensions: 853
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 25
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)