Query 023423
Match_columns 282
No_of_seqs 157 out of 1380
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:55:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02371 phosphoglucosamine mu 100.0 1.9E-41 4E-46 341.3 25.3 208 69-281 62-275 (583)
2 PRK14317 glmM phosphoglucosami 100.0 3.9E-38 8.3E-43 309.5 20.4 186 71-282 15-201 (465)
3 PRK14324 glmM phosphoglucosami 100.0 3.7E-38 8.1E-43 308.2 19.0 183 73-282 2-188 (446)
4 cd05802 GlmM GlmM is a bacteri 100.0 6.3E-38 1.4E-42 305.2 19.4 180 74-281 1-181 (434)
5 PRK14318 glmM phosphoglucosami 100.0 7.6E-38 1.6E-42 306.0 19.6 184 73-281 3-187 (448)
6 cd03089 PMM_PGM The phosphoman 100.0 1.1E-37 2.3E-42 304.3 20.0 175 74-282 1-176 (443)
7 PRK14315 glmM phosphoglucosami 100.0 1E-37 2.2E-42 305.1 19.7 183 72-282 3-189 (448)
8 cd05805 MPG1_transferase GTP-m 100.0 5E-38 1.1E-42 306.5 17.5 179 74-281 1-180 (441)
9 PRK14323 glmM phosphoglucosami 100.0 1.3E-37 2.9E-42 303.5 19.4 181 72-281 3-185 (440)
10 PRK14316 glmM phosphoglucosami 100.0 1.3E-37 2.9E-42 304.0 19.2 181 73-281 2-185 (448)
11 cd05803 PGM_like4 This PGM-lik 100.0 2.1E-37 4.5E-42 302.5 20.1 184 74-281 1-185 (445)
12 PRK14314 glmM phosphoglucosami 100.0 6E-37 1.3E-41 299.8 20.1 184 72-281 3-189 (450)
13 COG1109 {ManB} Phosphomannomut 100.0 6E-37 1.3E-41 301.1 19.8 181 72-282 7-191 (464)
14 PRK10887 glmM phosphoglucosami 100.0 6.8E-37 1.5E-41 298.9 20.1 182 72-281 1-183 (443)
15 PRK15414 phosphomannomutase Cp 100.0 6.1E-37 1.3E-41 300.4 19.1 178 72-282 4-183 (456)
16 cd05800 PGM_like2 This PGM-lik 100.0 7.2E-37 1.6E-41 299.7 19.2 183 74-282 2-186 (461)
17 TIGR01455 glmM phosphoglucosam 100.0 1.1E-36 2.4E-41 297.3 19.4 182 75-281 1-184 (443)
18 PRK14322 glmM phosphoglucosami 100.0 5.5E-37 1.2E-41 298.4 16.3 173 73-281 4-177 (429)
19 PRK14321 glmM phosphoglucosami 100.0 1E-36 2.2E-41 298.3 18.0 173 73-281 3-177 (449)
20 PRK14320 glmM phosphoglucosami 100.0 3.4E-36 7.4E-41 294.0 19.4 181 73-281 3-184 (443)
21 cd03087 PGM_like1 This archaea 100.0 4.9E-36 1.1E-40 292.2 18.3 174 74-281 1-176 (439)
22 PTZ00150 phosphoglucomutase-2- 100.0 2.5E-36 5.4E-41 304.2 16.7 221 43-282 10-241 (584)
23 PRK09542 manB phosphomannomuta 100.0 1.3E-35 2.8E-40 290.2 18.9 175 75-282 1-177 (445)
24 PRK14319 glmM phosphoglucosami 100.0 1E-35 2.2E-40 289.6 17.3 173 73-282 2-175 (430)
25 cd03088 ManB ManB is a bacteri 100.0 5.5E-35 1.2E-39 286.8 20.4 176 75-281 2-177 (459)
26 TIGR01132 pgm phosphoglucomuta 100.0 5E-35 1.1E-39 292.6 19.5 186 72-282 38-240 (543)
27 cd05799 PGM2 This CD includes 100.0 5E-35 1.1E-39 288.6 19.2 191 74-282 3-199 (487)
28 PF02878 PGM_PMM_I: Phosphoglu 100.0 5.4E-35 1.2E-39 243.3 14.2 133 72-220 1-134 (137)
29 PRK07564 phosphoglucomutase; V 100.0 2.6E-34 5.7E-39 287.4 19.7 184 73-281 38-238 (543)
30 PLN02307 phosphoglucomutase 100.0 4.1E-34 9E-39 287.5 19.8 192 72-282 22-237 (579)
31 cd03085 PGM1 Phosphoglucomutas 100.0 1E-33 2.2E-38 283.3 19.8 190 73-282 11-220 (548)
32 cd05801 PGM_like3 This bacteri 100.0 7.8E-34 1.7E-38 282.8 18.6 184 73-281 21-222 (522)
33 KOG1220 Phosphoglucomutase/pho 100.0 7.1E-32 1.5E-36 264.3 14.7 194 72-282 58-260 (607)
34 COG0033 Pgm Phosphoglucomutase 99.9 1E-22 2.2E-27 195.0 13.2 187 74-281 17-216 (524)
35 cd03084 phosphohexomutase The 99.8 1.6E-20 3.5E-25 178.4 11.0 123 74-281 1-124 (355)
36 KOG0625 Phosphoglucomutase [Ca 99.8 5.5E-18 1.2E-22 161.5 13.9 189 76-281 19-225 (558)
37 cd03086 PGM3 PGM3 (phosphogluc 99.4 1.9E-12 4.1E-17 129.4 10.7 54 125-180 102-155 (513)
38 PLN02895 phosphoacetylglucosam 99.1 3.2E-10 6.9E-15 114.3 10.5 48 125-172 127-174 (562)
39 PTZ00302 N-acetylglucosamine-p 99.1 6.9E-10 1.5E-14 112.4 10.1 48 125-172 152-200 (585)
40 PLN02895 phosphoacetylglucosam 98.8 6.4E-08 1.4E-12 97.7 12.1 63 142-214 31-94 (562)
41 PTZ00302 N-acetylglucosamine-p 98.5 2.2E-07 4.8E-12 94.4 6.8 37 178-214 75-112 (585)
42 cd03086 PGM3 PGM3 (phosphogluc 98.5 1.5E-07 3.3E-12 94.4 5.2 35 179-213 36-71 (513)
43 KOG2537 Phosphoglucomutase/pho 97.3 0.0002 4.3E-09 70.9 4.2 49 125-173 124-172 (539)
44 KOG2537 Phosphoglucomutase/pho 97.1 0.00028 6.1E-09 69.9 2.1 31 176-206 57-87 (539)
45 PF02502 LacAB_rpiB: Ribose/Ga 87.1 2.6 5.6E-05 35.5 6.9 59 127-187 1-66 (140)
46 TIGR01119 lacB galactose-6-pho 86.9 2.8 6.1E-05 36.6 7.2 58 127-186 2-66 (171)
47 TIGR01118 lacA galactose-6-pho 86.4 3.5 7.6E-05 34.9 7.3 59 127-187 2-65 (141)
48 PRK08621 galactose-6-phosphate 86.1 3.7 8E-05 34.8 7.3 59 127-187 2-65 (142)
49 PRK05571 ribose-5-phosphate is 86.1 4.1 8.8E-05 34.7 7.6 59 127-187 2-68 (148)
50 PRK12613 galactose-6-phosphate 85.8 4 8.6E-05 34.6 7.3 59 127-187 2-64 (141)
51 TIGR01120 rpiB ribose 5-phosph 85.5 3.5 7.6E-05 34.9 6.9 58 127-186 1-65 (143)
52 PTZ00215 ribose 5-phosphate is 85.2 4 8.7E-05 34.9 7.2 60 126-187 3-71 (151)
53 TIGR02133 RPI_actino ribose 5- 82.3 6.5 0.00014 33.5 7.3 59 127-187 2-68 (148)
54 PRK08622 galactose-6-phosphate 82.3 5.7 0.00012 34.7 7.0 58 127-186 2-66 (171)
55 TIGR00689 rpiB_lacA_lacB sugar 81.3 5.9 0.00013 33.6 6.6 58 128-187 1-65 (144)
56 PRK12615 galactose-6-phosphate 80.7 7.1 0.00015 34.1 7.1 58 127-186 2-66 (171)
57 COG0698 RpiB Ribose 5-phosphat 77.0 9.6 0.00021 32.6 6.6 58 127-186 2-67 (151)
58 COG0426 FpaA Uncharacterized f 67.3 24 0.00052 34.7 7.8 75 99-187 229-306 (388)
59 cd02072 Glm_B12_BD B12 binding 60.8 18 0.00039 30.0 4.8 52 130-186 7-58 (128)
60 TIGR01501 MthylAspMutase methy 57.1 23 0.00049 29.6 4.9 52 130-186 9-60 (134)
61 TIGR00674 dapA dihydrodipicoli 57.1 58 0.0012 30.0 8.1 92 55-159 8-99 (285)
62 TIGR00696 wecB_tagA_cpsF bacte 54.0 69 0.0015 27.8 7.6 69 135-219 30-98 (177)
63 TIGR03249 KdgD 5-dehydro-4-deo 53.6 61 0.0013 30.1 7.7 91 55-159 15-105 (296)
64 COG2185 Sbm Methylmalonyl-CoA 52.6 30 0.00065 29.4 4.9 43 126-171 13-58 (143)
65 cd03364 TOPRIM_DnaG_primases T 52.4 33 0.00072 25.2 4.7 34 126-159 44-77 (79)
66 PRK02261 methylaspartate mutas 50.8 88 0.0019 25.9 7.5 55 126-186 4-62 (137)
67 PRK03620 5-dehydro-4-deoxygluc 50.3 73 0.0016 29.8 7.7 91 55-159 17-107 (303)
68 cd00408 DHDPS-like Dihydrodipi 50.2 83 0.0018 28.6 7.9 92 55-159 7-98 (281)
69 cd00951 KDGDH 5-dehydro-4-deox 49.8 78 0.0017 29.3 7.7 90 56-159 11-100 (289)
70 cd02069 methionine_synthase_B1 49.4 91 0.002 27.8 7.8 60 125-187 88-148 (213)
71 PF00861 Ribosomal_L18p: Ribos 46.7 67 0.0014 26.1 6.0 52 95-156 68-119 (119)
72 TIGR00640 acid_CoA_mut_C methy 44.6 45 0.00097 27.5 4.7 51 131-186 11-61 (132)
73 PRK04147 N-acetylneuraminate l 43.7 1E+02 0.0023 28.4 7.6 92 55-159 13-105 (293)
74 TIGR01114 mtrH N5-methyltetrah 43.0 22 0.00048 33.9 2.9 71 126-200 149-241 (314)
75 PF07984 DUF1693: Domain of un 42.4 1.4E+02 0.0029 28.8 8.1 126 95-253 1-130 (320)
76 COG1105 FruK Fructose-1-phosph 42.1 3.2E+02 0.0069 26.2 10.8 113 145-278 42-168 (310)
77 PRK14047 putative methyltransf 41.9 24 0.00052 33.6 3.0 74 126-203 149-244 (310)
78 PF00701 DHDPS: Dihydrodipicol 41.5 81 0.0018 29.0 6.5 93 54-159 10-102 (289)
79 PRK13883 conjugal transfer pro 41.3 1.4E+02 0.003 25.6 7.3 60 93-161 26-85 (151)
80 cd00950 DHDPS Dihydrodipicolin 41.2 1.2E+02 0.0025 27.8 7.5 92 55-159 10-101 (284)
81 PRK03170 dihydrodipicolinate s 41.0 1.3E+02 0.0028 27.7 7.8 92 55-159 11-102 (292)
82 cd00954 NAL N-Acetylneuraminic 41.0 1.4E+02 0.003 27.5 8.0 92 55-159 10-102 (288)
83 PF13662 Toprim_4: Toprim doma 38.5 25 0.00054 26.0 2.1 34 126-159 47-80 (81)
84 TIGR02313 HpaI-NOT-DapA 2,4-di 38.4 1.6E+02 0.0034 27.5 7.9 92 55-159 10-101 (294)
85 PF02789 Peptidase_M17_N: Cyto 38.0 1.3E+02 0.0028 23.5 6.4 56 89-153 60-116 (126)
86 PRK03692 putative UDP-N-acetyl 36.9 97 0.0021 28.4 6.1 70 134-219 86-155 (243)
87 KOG3852 Uncharacterized conser 35.3 2.9E+02 0.0063 26.8 9.0 98 138-253 80-178 (426)
88 PRK11921 metallo-beta-lactamas 34.3 1.9E+02 0.0042 27.9 8.1 54 99-161 230-286 (394)
89 PRK14719 bifunctional RNAse/5- 33.8 37 0.00079 33.0 2.9 33 125-157 67-99 (360)
90 PTZ00090 40S ribosomal protein 33.2 2.8E+02 0.0061 25.3 8.2 61 93-166 158-219 (233)
91 PRK13835 conjugal transfer pro 32.3 2.1E+02 0.0045 24.4 6.8 56 93-158 32-87 (145)
92 cd01989 STK_N The N-terminal d 32.0 63 0.0014 25.8 3.7 39 127-165 1-39 (146)
93 PF03808 Glyco_tran_WecB: Glyc 31.6 2.2E+02 0.0049 24.1 7.2 71 134-219 29-99 (172)
94 PLN02739 serine acetyltransfer 31.5 38 0.00082 33.0 2.6 32 93-135 322-353 (355)
95 PLN02417 dihydrodipicolinate s 31.4 1.8E+02 0.004 26.7 7.1 92 55-159 11-102 (280)
96 COG0683 LivK ABC-type branched 30.6 3.1E+02 0.0068 25.9 8.7 79 103-190 134-215 (366)
97 COG0256 RplR Ribosomal protein 30.5 2E+02 0.0043 23.9 6.3 51 96-156 75-125 (125)
98 CHL00041 rps11 ribosomal prote 29.9 3E+02 0.0065 22.2 8.1 61 93-165 51-112 (116)
99 TIGR02370 pyl_corrinoid methyl 29.5 2.6E+02 0.0055 24.4 7.4 59 126-187 85-144 (197)
100 PF00582 Usp: Universal stress 29.2 51 0.0011 24.9 2.6 43 126-168 3-45 (140)
101 PRK05452 anaerobic nitric oxid 28.5 3.5E+02 0.0077 27.1 9.0 57 99-164 234-293 (479)
102 PRK09607 rps11p 30S ribosomal 28.5 3E+02 0.0064 23.1 7.1 66 93-165 48-117 (132)
103 PRK10310 PTS system galactitol 28.1 2.8E+02 0.006 21.3 7.0 82 128-216 6-87 (94)
104 PRK04017 hypothetical protein; 27.9 1.1E+02 0.0025 25.5 4.5 32 126-157 66-97 (132)
105 PF04069 OpuAC: Substrate bind 27.5 1.9E+02 0.0042 25.8 6.4 60 127-188 2-62 (257)
106 PF13362 Toprim_3: Toprim doma 27.2 1.7E+02 0.0037 22.0 5.2 36 126-161 42-79 (96)
107 PF06258 Mito_fiss_Elm1: Mitoc 26.9 5.4E+02 0.012 24.3 9.5 59 94-159 124-188 (311)
108 PF03808 Glyco_tran_WecB: Glyc 26.8 3.9E+02 0.0085 22.6 7.9 59 127-186 75-133 (172)
109 PRK09271 flavodoxin; Provision 26.7 1.7E+02 0.0037 24.4 5.5 31 127-157 2-33 (160)
110 PTZ00129 40S ribosomal protein 26.5 2.2E+02 0.0048 24.4 6.1 69 89-165 63-136 (149)
111 cd02070 corrinoid_protein_B12- 25.0 3.4E+02 0.0074 23.6 7.3 56 126-187 83-142 (201)
112 TIGR00683 nanA N-acetylneurami 24.9 3.6E+02 0.0078 25.0 7.9 92 55-159 10-102 (290)
113 TIGR03632 bact_S11 30S ribosom 24.8 3.6E+02 0.0078 21.4 8.0 60 93-165 38-99 (108)
114 PF02007 MtrH: Tetrahydrometha 24.7 39 0.00085 32.0 1.4 75 126-204 144-240 (296)
115 cd00953 KDG_aldolase KDG (2-ke 24.6 4.2E+02 0.0091 24.3 8.2 83 61-159 15-97 (279)
116 cd06335 PBP1_ABC_ligand_bindin 23.8 2.2E+02 0.0048 26.3 6.3 50 103-160 124-173 (347)
117 PF03602 Cons_hypoth95: Conser 23.1 65 0.0014 28.0 2.3 49 131-184 18-71 (183)
118 cd02067 B12-binding B12 bindin 23.1 3.6E+02 0.0078 20.9 7.0 32 131-165 8-39 (119)
119 COG1867 TRM1 N2,N2-dimethylgua 23.1 2.2E+02 0.0047 28.1 6.1 89 73-187 58-155 (380)
120 cd06533 Glyco_transf_WecG_TagA 22.4 1.5E+02 0.0033 25.2 4.5 57 133-191 26-82 (171)
121 PRK05568 flavodoxin; Provision 21.9 2.2E+02 0.0047 22.8 5.2 39 127-165 3-42 (142)
122 PRK09273 hypothetical protein; 21.4 2.9E+02 0.0062 25.0 6.1 23 139-161 16-38 (211)
123 TIGR00060 L18_bact ribosomal p 21.4 4.5E+02 0.0098 21.4 6.8 51 95-155 63-113 (114)
124 TIGR00646 MG010 DNA primase-re 21.4 1.5E+02 0.0033 26.8 4.4 33 126-158 155-187 (218)
125 PRK08105 flavodoxin; Provision 21.3 3.6E+02 0.0077 22.4 6.4 56 127-188 3-59 (149)
126 PF13458 Peripla_BP_6: Peripla 20.9 2.8E+02 0.0061 25.0 6.3 54 95-157 114-167 (343)
127 PRK05569 flavodoxin; Provision 20.7 2.2E+02 0.0048 22.7 5.0 37 127-163 3-40 (141)
128 smart00493 TOPRIM topoisomeras 20.6 1.4E+02 0.003 21.1 3.4 28 126-153 48-75 (76)
129 PRK05309 30S ribosomal protein 20.3 5E+02 0.011 21.4 8.1 61 93-165 55-116 (128)
130 cd01029 TOPRIM_primases TOPRIM 20.2 2.5E+02 0.0055 20.0 4.7 33 126-158 44-76 (79)
131 cd06533 Glyco_transf_WecG_TagA 20.1 5.4E+02 0.012 21.8 7.7 74 127-208 73-147 (171)
No 1
>PLN02371 phosphoglucosamine mutase family protein
Probab=100.00 E-value=1.9e-41 Score=341.30 Aligned_cols=208 Identities=58% Similarity=0.876 Sum_probs=165.5
Q ss_pred hhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHH
Q 023423 69 DRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAG 148 (282)
Q Consensus 69 ~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~g 148 (282)
+++++||+++||||+++.|..|+.++|||+++.++|+|||+||.++.... + ....+|+||||+|.+|++|++++++|
T Consensus 62 ~~~~~lf~~~giRGv~~~g~~g~~v~lTpe~v~~ig~A~a~~l~~~~~~~-~--~~~~~VvVG~D~R~sS~~l~~a~a~g 138 (583)
T PLN02371 62 DDIRKLQNGSDIRGVAVEGVEGEPVTLTPPAVEAIGAAFAEWLLEKKKAD-G--SGELRVSVGRDPRISGPRLADAVFAG 138 (583)
T ss_pred HHHHHhhhhcCcceEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc-c--CCCCeEEEEeCCCCChHHHHHHHHHH
Confidence 58999999999999999888878789999999999999999997641000 0 01247999999999999999999999
Q ss_pred HHHCCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChHHHHHHHHHHHh--hhhccc-
Q 023423 149 LARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSPVVEDICGEAAR--KFANRL- 225 (282)
Q Consensus 149 L~s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~~i~~i~~~~~~--~~~~~~- 225 (282)
|+++|++|+++|++|||+++|+++..+++++|||||||||||++||||||++++|....++++++++.... ..+.+.
T Consensus 139 L~s~Gi~V~~~g~~pTP~~~~av~~~~~~~~gGImITASHNP~~~NGiK~~~~~G~~~~~~~~~~ie~~~~~~~e~~~~~ 218 (583)
T PLN02371 139 LASAGLDVVDMGLATTPAMFMSTLTEREDYDAPIMITASHLPYNRNGLKFFTKDGGLGKPDIKDILERAARIYKEWSDEG 218 (583)
T ss_pred HHHCCCEEEEecccCchHHHHHHHhccCCCceEEEEeCCCCCCCCCCEEEeCCCCCCCchHHHHHHHHHHhhcccccccc
Confidence 99999999999999999999999732337899999999999999999999999999666666666665433 111110
Q ss_pred --cc-cccccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 226 --TK-VSTVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 226 --~~-~~~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
+. ....|.+ ...|+++.|+++|++.++...+||.+...++++|||||||+||++
T Consensus 219 ~~~~~~~~~g~i--~~~d~~~~Y~~~l~~~i~~~~~~~~~~~~~~~~lkIvvD~~nGag 275 (583)
T PLN02371 219 LLKSSSGASSVV--CRVDFMSTYAKHLRDAIKEGVGHPTNYETPLEGFKIVVDAGNGAG 275 (583)
T ss_pred cchhhhccCCcE--EEechHHHHHHHHHHHHHHhhccccccccCCCCCEEEEeCCCCch
Confidence 00 0113432 346889999999999998766666543445679999999999986
No 2
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.9e-38 Score=309.48 Aligned_cols=186 Identities=25% Similarity=0.303 Sum_probs=149.7
Q ss_pred ccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHH
Q 023423 71 IRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLA 150 (282)
Q Consensus 71 ~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~ 150 (282)
.+.+|+.+||||+++ ++|||+++.++|+|+|+++++.. ....+|+||||+|.+|++|++++++||+
T Consensus 15 ~~~~Fgt~GIRG~~~-------~~ltpe~a~~lg~a~g~~l~~~~-------~~~~~VvVG~D~R~ss~~l~~a~~~gL~ 80 (465)
T PRK14317 15 ASPLFGTDGIRGKVG-------ELLTAPLALQVGFWAGQVLRQTA-------PGEGPVLIGQDSRNSSDMLAMALAAGLT 80 (465)
T ss_pred cCCeecCCCeeeEeC-------cccCHHHHHHHHHHHHHHHHhcc-------CCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 457888888999998 48999999999999999996531 0125799999999999999999999999
Q ss_pred HCCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChH-HHHHHHHHHHhhhhccccccc
Q 023423 151 RAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSP-VVEDICGEAARKFANRLTKVS 229 (282)
Q Consensus 151 s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~-~i~~i~~~~~~~~~~~~~~~~ 229 (282)
++|++|+++|++|||+++|+++ +++++|||||||||||++||||||++++|...++ ++++|++.+.++.+.+... .
T Consensus 81 s~Gv~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHnP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~-~ 157 (465)
T PRK14317 81 AAGREVWHLGLCPTPAVAYLTR--KSEAIGGLMISASHNPPEDNGIKFFGADGTKLSPELQAQIEAGLRGELSSSDNA-S 157 (465)
T ss_pred HCCCeEEEecccCcHHHHHHHH--hcCCCEEEEEeCCCCCcccCCEEEEcCCCCcCCHHHHHHHHHHHhcccccccch-h
Confidence 9999999999999999999997 7899999999999999999999999999984444 4555554444332222111 1
Q ss_pred cccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 230 TVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 230 ~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
..|.. ....++.+.|+++|.+.++.+ ++++++||||||+||+++
T Consensus 158 ~~g~~-~~~~~~~~~Y~~~l~~~id~~--------i~~~~~kVvvD~~nG~~~ 201 (465)
T PRK14317 158 NWGRH-YHRPELLDDYRDALLESLPDR--------VNLQGVKIVLDLAWGAAV 201 (465)
T ss_pred cCCce-EecCChHHHHHHHHHHhcCcc--------cccCCCEEEEECCCchHH
Confidence 23442 223488999999999998742 245789999999999863
No 3
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.7e-38 Score=308.22 Aligned_cols=183 Identities=28% Similarity=0.345 Sum_probs=147.8
Q ss_pred ccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 023423 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (282)
Q Consensus 73 ~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~ 152 (282)
.+|+.+||||+++ ++|||++|.++|+|||+++.+. + ...+|+||||+|.+|++|++++++||+++
T Consensus 2 ~~Fgt~GiRG~~~-------~~lt~~~~~~lg~a~g~~l~~~-----~---~~~~V~Vg~D~R~ss~~l~~a~~~gL~s~ 66 (446)
T PRK14324 2 KLFGTDGVRGKAG-------EKLTAFLAMRLAMAAGIYFKKH-----S---ITNKILVGKDTRRSGYMIENALVSGLTSV 66 (446)
T ss_pred cccCCCCcceecC-------CCcCHHHHHHHHHHHHHHHHhC-----C---CCCeEEEEeCCCcCHHHHHHHHHHHHHHC
Confidence 5788888999997 4899999999999999999764 1 12479999999999999999999999999
Q ss_pred CCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChHH-HHHHHHHHHhhhh---cccccc
Q 023423 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSPV-VEDICGEAARKFA---NRLTKV 228 (282)
Q Consensus 153 Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~~-i~~i~~~~~~~~~---~~~~~~ 228 (282)
|++|+++|.+|||+++|++. +++++|||||||||||++||||||++++|....++ +++|++.+.++.+ .+.+.
T Consensus 67 G~~V~~~g~~pTP~~~~a~~--~~~~~gGI~ITaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~- 143 (446)
T PRK14324 67 GYNVIQIGPMPTPAIAFLTE--DMRCDAGIMISASHNPYYDNGIKFFDSYGNKLDEEEEKEIEEIFFDEELIQSSQKTG- 143 (446)
T ss_pred CCeEEEecCccHHHHHHHHh--hcCCceEEEEEcCCCChhHCCEEEECCCCCCCCHHHHHHHHHHHhccccccccccch-
Confidence 99999999999999999997 78999999999999999999999999999855444 5566554433322 12111
Q ss_pred ccccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 229 STVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 229 ~~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
...|.+ ....++.+.|+++|.+.++.+ ..+++|||||||+||+++
T Consensus 144 ~~~g~~-~~~~~~~~~Y~~~l~~~i~~~--------~~~~~lkVvvD~~nGa~~ 188 (446)
T PRK14324 144 EEIGSA-KRIDDVIGRYIVHIKNSFPKD--------LTLKGLRIVLDTANGAAY 188 (446)
T ss_pred hhCeee-EecccHHHHHHHHHHHhcCCc--------cCCCCCEEEEECCCchHH
Confidence 123543 123368899999999998632 235789999999999863
No 4
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=6.3e-38 Score=305.21 Aligned_cols=180 Identities=29% Similarity=0.371 Sum_probs=147.5
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 023423 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (282)
Q Consensus 74 Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~G 153 (282)
+|+.+||||+++ ++|||++|.++|+|||+++.+.. ...+|+||||+|.+|++|++++++||+++|
T Consensus 1 ~Fg~~giRG~~~-------~~lt~e~~~~lg~a~~~~l~~~~--------~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G 65 (434)
T cd05802 1 LFGTDGIRGVAN-------EPLTPELALKLGRAAGKVLGKGG--------GRPKVLIGKDTRISGYMLESALAAGLTSAG 65 (434)
T ss_pred CCCCCccceECC-------CCCCHHHHHHHHHHHHHHHHhcC--------CCCeEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 688889999998 48999999999999999997531 125799999999999999999999999999
Q ss_pred CcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhcccccccccc
Q 023423 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFANRLTKVSTVL 232 (282)
Q Consensus 154 v~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~~~~~~~~~g 232 (282)
++|+++|++|||+++|+++ +++++|||||||||||++||||||++++|. +.++++++|.+.+.++.+.+... ...|
T Consensus 66 ~~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHnp~~~nGiK~~~~~G~~i~~~~~~~i~~~~~~~~~~~~~~-~~~g 142 (434)
T cd05802 66 VDVLLLGVIPTPAVAYLTR--KLRADAGVVISASHNPFEDNGIKFFSSDGYKLPDEVEEEIEALIDKELELPPTG-EKIG 142 (434)
T ss_pred CcEEEEcccchHHHHHHHH--HhCCCeEEEEEecCCchhhCCEEEECCCCCcCCHHHHHHHHHHHhCcccccccc-ccCe
Confidence 9999999999999999998 789999999999999999999999999998 44444566655554433222110 1245
Q ss_pred CCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 233 RNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 233 ~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
.+ ....++.+.|+++|.+.++.. .++++||||||+||++
T Consensus 143 ~~-~~~~~~~~~Y~~~l~~~~~~~---------~~~~lkVvvD~~nG~~ 181 (434)
T cd05802 143 RV-YRIDDARGRYIEFLKSTFPKD---------LLSGLKIVLDCANGAA 181 (434)
T ss_pred eE-EEccchHHHHHHHHHHhcCcc---------ccCCCEEEEECCCchH
Confidence 43 123478899999999999742 1468999999999986
No 5
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=7.6e-38 Score=306.02 Aligned_cols=184 Identities=32% Similarity=0.345 Sum_probs=148.2
Q ss_pred ccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 023423 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (282)
Q Consensus 73 ~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~ 152 (282)
.+|+.+||||+++ ++|||++++++|+|||+++.++... + ....+|+||||+|.+|++|++++++||+++
T Consensus 3 ~~Fg~~giRG~~~-------~~ltpe~~~~lg~a~~~~l~~~~~~--~--~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~ 71 (448)
T PRK14318 3 RLFGTDGVRGLAN-------RDLTAELALALGAAAARVLGHAGRP--G--GRRPVAVVGRDPRASGEFLEAAVSAGLASA 71 (448)
T ss_pred cccCCCCcceecC-------CccCHHHHHHHHHHHHHHHHhcccc--c--CCCCeEEEEeCCCcCHHHHHHHHHHHHHHC
Confidence 6899999999998 4899999999999999999753100 0 012569999999999999999999999999
Q ss_pred CCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChH-HHHHHHHHHHhhhhccccccccc
Q 023423 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSP-VVEDICGEAARKFANRLTKVSTV 231 (282)
Q Consensus 153 Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~-~i~~i~~~~~~~~~~~~~~~~~~ 231 (282)
|++|+++|++|||+++|+++ +++++|||||||||||++||||||++++|...++ ..++|++.+.++.+.+.+. ...
T Consensus 72 G~~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHnp~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~-~~~ 148 (448)
T PRK14318 72 GVDVLRVGVLPTPAVAYLTA--ALDADFGVMISASHNPMPDNGIKFFAAGGHKLPDDVEDRIEAVLGQLPWLRPTG-AGV 148 (448)
T ss_pred CCEEEEecccCchHHHHHHH--hcCCCEEEEEEcCCCCcccCCEEEEcCCCCcCCHHHHHHHHHHHhccCcccccc-ccC
Confidence 99999999999999999998 7899999999999999999999999999985544 4556655444433332221 124
Q ss_pred cCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 232 LRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 232 g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
|.+ ....+..+.|+++|.+.++ .+++++||||||+||++
T Consensus 149 g~~-~~~~~~~~~Y~~~l~~~i~----------~~~~~~kVvvD~~nG~~ 187 (448)
T PRK14318 149 GRV-IDAPDATDRYLRHLLGALP----------TRLDGLKVVVDCAHGAA 187 (448)
T ss_pred ceE-EECCcHHHHHHHHHHHHhc----------cccCCCEEEEECCCchH
Confidence 543 1234788999999999886 23468999999999985
No 6
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=100.00 E-value=1.1e-37 Score=304.33 Aligned_cols=175 Identities=31% Similarity=0.488 Sum_probs=148.2
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 023423 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (282)
Q Consensus 74 Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~G 153 (282)
+|+.+||||++++ +|||+++.++|+|||+++.+. + ..+|+||||+|.+|++|++++++||+++|
T Consensus 1 ~Fg~~giRG~~~~-------~lt~~~v~~l~~a~~~~l~~~-----~----~~~VvVg~D~R~~s~~~~~a~~~gL~s~G 64 (443)
T cd03089 1 IFRAYDIRGIAGE-------ELTEEIAYAIGRAFGSWLLEK-----G----AKKVVVGRDGRLSSPELAAALIEGLLAAG 64 (443)
T ss_pred CCcccccceeeCC-------ccCHHHHHHHHHHHHHHHHhc-----C----CCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 6888999999984 899999999999999999753 1 25799999999999999999999999999
Q ss_pred CcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhcccccccccc
Q 023423 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFANRLTKVSTVL 232 (282)
Q Consensus 154 v~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~~~~~~~~~g 232 (282)
++|+++|++|||+++|+++ +++++|||||||||||++||||||+++ |+ +.++++++|++.+.++.+.+ . ...|
T Consensus 65 ~~V~~~g~~pTP~~~~~v~--~~~a~gGI~ITASHNP~~~nGiK~~~~-G~~~~~~~~~~Ie~~~~~~~~~~-~--~~~g 138 (443)
T cd03089 65 CDVIDIGLVPTPVLYFATF--HLDADGGVMITASHNPPEYNGFKIVIG-GGPLSGEDIQALRERAEKGDFAA-A--TGRG 138 (443)
T ss_pred CcEEEeCCcchHHHHHHHh--ccCCCeEEEEecCCCCcccCceEeccC-CCCCCHHHHHHHHHHHHhccccc-c--CCCC
Confidence 9999999999999999997 789999999999999999999999999 65 77777777777665443322 1 1245
Q ss_pred CCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 233 RNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 233 ~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
.+ ...|+.+.|+++|.+.++. ..+++|||+||+||+++
T Consensus 139 ~~--~~~d~~~~Y~~~l~~~i~~----------~~~~lkVvvd~~~G~~~ 176 (443)
T cd03089 139 SV--EKVDILPDYIDRLLSDIKL----------GKRPLKVVVDAGNGAAG 176 (443)
T ss_pred cE--EECCCHHHHHHHHHHhccc----------ccCCCeEEEECCCCchH
Confidence 43 3448899999999999863 22789999999999863
No 7
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1e-37 Score=305.13 Aligned_cols=183 Identities=25% Similarity=0.315 Sum_probs=149.3
Q ss_pred cccccccceeeeeccCCCCCCCC-CCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHH
Q 023423 72 RRLQNGSDVRGVALEGEKGRTVD-LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLA 150 (282)
Q Consensus 72 ~~Lf~gtdIRGi~~~g~~g~~~d-LTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~ 150 (282)
+.+|+.+||||+++. + |||+++.++|+|||+++.++. ...+|+||||+|.+|++|++++++||+
T Consensus 3 ~~~Fg~~giRG~~~~-------~~lt~e~~~~lg~a~g~~l~~~~--------~~~~VvVg~D~R~ss~~l~~a~~~gL~ 67 (448)
T PRK14315 3 RKYFGTDGIRGRANT-------FPMTAELALRVGQAAGLYFRRGD--------HRHRVVIGKDTRLSGYMIENALVAGFT 67 (448)
T ss_pred CcEECCCCceecCCC-------CCCCHHHHHHHHHHHHHhHhhcC--------CCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 578999999999974 7 999999999999999998631 124799999999999999999999999
Q ss_pred HCCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhc--cccc
Q 023423 151 RAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFAN--RLTK 227 (282)
Q Consensus 151 s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~--~~~~ 227 (282)
++|++|+++|.+|||+++|+++ +++++|||||||||||++||||||++++|. +...++++|++.+ ++.+. +...
T Consensus 68 s~G~~V~~~g~~pTP~~~~a~~--~~~~~gGi~ITaSHnP~~~nGiK~~~~~G~~i~~~~~~~ie~~~-~~~~~~~~~~~ 144 (448)
T PRK14315 68 SVGMDVLLLGPIPTPAVAMLTR--SMRADLGVMISASHNPFEDNGIKLFGPDGFKLSDEIELEIEALL-DGDLDKRLAAP 144 (448)
T ss_pred HCCCeEEEeCCcccHHHHHHHH--hcCCCEEEEEEcCCCCcccCCEEEECCCCCcCCHHHHHHHHHHH-hcccccccccc
Confidence 9999999999999999999997 789999999999999999999999999998 5555566665444 33222 2111
Q ss_pred cccccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 228 VSTVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 228 ~~~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
...|.+ ....++.+.|+++|++.++.. +++++|||||||+||+++
T Consensus 145 -~~~g~~-~~~~~~~~~Y~~~l~~~id~~--------i~~~~lkVvvD~~~G~~~ 189 (448)
T PRK14315 145 -ADIGRA-KRIDDAHGRYIEFAKRTLPRD--------LRLDGLRVVVDCANGAAY 189 (448)
T ss_pred -ccCcce-EEecchHHHHHHHHHHhcccc--------cccCCCEEEEECCCchHH
Confidence 124543 122368899999999998742 245799999999999863
No 8
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=100.00 E-value=5e-38 Score=306.45 Aligned_cols=179 Identities=19% Similarity=0.236 Sum_probs=147.1
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 023423 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (282)
Q Consensus 74 Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~G 153 (282)
+|+.+||||++++ +|||++|.++|+|||+++.++ .+|+||||+|.+|++|++++++||+++|
T Consensus 1 ~Fgt~giRG~~~~-------~lt~~~~~~lg~a~~~~l~~~-----------~~VvVG~D~R~ss~~~~~a~~~gL~s~G 62 (441)
T cd05805 1 LFGGRGVSGLINV-------DITPEFATRLGAAYGSTLPPG-----------STVTVSRDASRASRMLKRALISGLLSTG 62 (441)
T ss_pred CCCCCCceEEeCC-------CCCHHHHHHHHHHHhhcCCCC-----------CEEEEEcCCChhHHHHHHHHHHHHHhCC
Confidence 5888889999984 899999999999999998532 4799999999999999999999999999
Q ss_pred CcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhcccccccccc
Q 023423 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFANRLTKVSTVL 232 (282)
Q Consensus 154 v~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~~~~~~~~~g 232 (282)
++|+++|.+|||+++|++. ++++++||||||||||++||||||++++|. +.++++++|.+.+..+.+.+... ...|
T Consensus 63 ~~V~~~g~~pTP~~~~av~--~~~~~gGi~ITaSHnp~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~-~~~g 139 (441)
T cd05805 63 VNVRDLGALPLPVARYAIR--FLGASGGIHVRTSPDDPDKVEIEFFDSRGLNISRAMERKIENAFFREDFRRAHV-DEIG 139 (441)
T ss_pred CeEEecCCcCchHHHHHHH--hcCCCeeEEEEeCCCCccceEEEEECCCCCcCCHHHHHHHHHHHhhhhhccccH-hhcC
Confidence 9999999999999999998 789999999999999999999999999998 55555666655544333222110 1235
Q ss_pred CCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 233 RNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 233 ~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
.+ ....+..+.|+++|.+.++.+. ++++++||||||+||++
T Consensus 140 ~~-~~~~~~~~~Y~~~l~~~i~~~~-------i~~~~lkIvvd~~~G~~ 180 (441)
T cd05805 140 DI-TEPPDFVEYYIRGLLRALDTSG-------LKKSGLKVVIDYAYGVA 180 (441)
T ss_pred cc-ccchhHHHHHHHHHHHHhCHHH-------HhhcCCeEEEECCCchH
Confidence 43 1234788999999999887542 24579999999999986
No 9
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.3e-37 Score=303.55 Aligned_cols=181 Identities=29% Similarity=0.320 Sum_probs=145.6
Q ss_pred cccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 023423 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (282)
Q Consensus 72 ~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s 151 (282)
+.+|+.+||||+++. .+|||+++.++|+|||++++... ...+|+||||+|.+|++|++++++||++
T Consensus 3 ~~~Fgt~giRG~~~~------~~lt~e~~~~lg~a~g~~l~~~~--------~~~~VvVg~D~R~ss~~l~~a~~~gL~s 68 (440)
T PRK14323 3 RRYFGTDGVRGVAGE------PPLTPEFVLKLGQAAGEVFKRHG--------PRPVVLLGKDTRQSGDMLEAALAAGLTS 68 (440)
T ss_pred ccEeCCCCeeeecCC------CCCCHHHHHHHHHHHHHHHHhcC--------CCCeEEEEeCCCccHHHHHHHHHHHHHH
Confidence 468999999999973 36999999999999999997631 1257999999999999999999999999
Q ss_pred CCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChHH-HHHHHHHHHh-hhhccccccc
Q 023423 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSPV-VEDICGEAAR-KFANRLTKVS 229 (282)
Q Consensus 152 ~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~~-i~~i~~~~~~-~~~~~~~~~~ 229 (282)
+|++|+++|++|||+++|++. +++++|||||||||||++||||||++++|...+++ .++|++.+.+ +.+.+... .
T Consensus 69 ~G~~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHnP~~~nGiK~~~~~G~~i~~~~~~~ie~~~~~~~~~~~~~~-~ 145 (440)
T PRK14323 69 RGVRVEHLGVLPTPGVSYLTR--HLGATAGVVISASHNPYQDNGIKFFGADGEKLPDAAELEIEALLDEVPELAEVTG-A 145 (440)
T ss_pred CCCEEEEecccChHHHHHHHH--HhCCCEEEEEecCCCCCccCCEEEeCCCCCcCCHHHHHHHHHHHhcccccCcccc-c
Confidence 999999999999999999998 78999999999999999999999999999855444 5555444433 12222111 1
Q ss_pred cccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 230 TVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 230 ~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
..|.+ ....++.+.|+++|.+.++ .++++||||||+||++
T Consensus 146 ~~g~~-~~~~~~~~~Y~~~l~~~~~-----------~~~~~kVvvD~~~G~~ 185 (440)
T PRK14323 146 GIGSV-SDFTEAERLYLDFLLSHAP-----------DLSGLKVALDCANGAA 185 (440)
T ss_pred CceeE-EEhhhHHHHHHHHHHHhcc-----------cccCCEEEEECCCchH
Confidence 23442 1223688999999988764 1368999999999986
No 10
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.3e-37 Score=303.98 Aligned_cols=181 Identities=28% Similarity=0.375 Sum_probs=146.6
Q ss_pred ccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 023423 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (282)
Q Consensus 73 ~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~ 152 (282)
.+|+.+||||+++ .+|||+++.++|+|||+++.+.. ....+|+||||+|.+|++|++++++||+++
T Consensus 2 ~~Fg~~giRG~~~-------~~ltpe~~~~ig~a~~~~l~~~~-------~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~ 67 (448)
T PRK14316 2 KYFGTDGVRGVAN-------KELTPELAFKLGRAGGYVLTKHE-------TERPKVLVGRDTRISGDMLESALIAGLLSV 67 (448)
T ss_pred ceeccCCcceEcC-------CCCCHHHHHHHHHHHHHHHHhcc-------CCCCeEEEEECCCcCHHHHHHHHHHHHHHC
Confidence 5788999999998 48999999999999999997521 012569999999999999999999999999
Q ss_pred CCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhh--hhccccccc
Q 023423 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARK--FANRLTKVS 229 (282)
Q Consensus 153 Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~--~~~~~~~~~ 229 (282)
|++|+++|++|||+++|+++ +++++|||||||||||++||||||++++|. +..+.+++|++.+.+. .+.+... .
T Consensus 68 G~~V~~~g~~pTP~~~~av~--~~~~~gGi~ITaSHnp~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~-~ 144 (448)
T PRK14316 68 GAEVMRLGVIPTPGVAYLTR--ALGADAGVMISASHNPVEDNGIKFFGSDGFKLSDEQEDEIEALLDAEEDTLPRPSG-E 144 (448)
T ss_pred CCEEEEecccchHHHHHHHH--HhcCcEEEEEEecCCChhhCcEEEEcCCCCcCCHHHHHHHHHHHhccccccccCcc-c
Confidence 99999999999999999998 789999999999999999999999999998 4444466665544432 1222211 1
Q ss_pred cccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 230 TVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 230 ~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
..|.+ ....+..+.|++.|.+.++. .++++||||||+||++
T Consensus 145 ~~g~~-~~~~~~~~~Y~~~l~~~i~~----------~~~~lkvvvD~~nG~~ 185 (448)
T PRK14316 145 GLGTV-SDYPEGLRKYLQFLKSTIDE----------DLSGLKVALDCANGAT 185 (448)
T ss_pred cceeE-EEeCcHHHHHHHHHHHhcCc----------ccCCCEEEEECCCchh
Confidence 23432 12346788999999999863 2468999999999986
No 11
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=2.1e-37 Score=302.54 Aligned_cols=184 Identities=26% Similarity=0.339 Sum_probs=151.4
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 023423 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (282)
Q Consensus 74 Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~G 153 (282)
+|+.+||||+++ ++|||+++.++|+|||+++.+.. ...+|+||||+|.+|++|++++++||+++|
T Consensus 1 ~f~~~GiRG~~~-------~~lt~~~v~~l~~a~~~~l~~~~--------~~~~Vvvg~D~R~~s~~l~~a~~~gL~~~G 65 (445)
T cd05803 1 IISISGIRGIVG-------EGLTPEVITRYVAAFATWQPERT--------KGGKIVVGRDGRPSGPMLEKIVIGALLACG 65 (445)
T ss_pred CCCcCceeeecC-------CCCCHHHHHHHHHHHHHHHHhcC--------CCCeEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence 578889999997 48999999999999999998541 125799999999999999999999999999
Q ss_pred CcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhcccccccccc
Q 023423 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFANRLTKVSTVL 232 (282)
Q Consensus 154 v~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~~~~~~~~~g 232 (282)
++|+++|.+|||+++|+++ ++++++||||||||||++||||||++++|. +.+++.++|++.+.++.+.+... ...|
T Consensus 66 ~~V~~~g~~pTP~~~~a~~--~~~~~~GI~ITaShnp~~~nGiK~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~-~~~g 142 (445)
T cd05803 66 CDVIDLGIAPTPTVQVLVR--QSQASGGIIITASHNPPQWNGLKFIGPDGEFLTPDEGEEVLSCAEAGSAQKAGY-DQLG 142 (445)
T ss_pred CeEEEeCCCCchHHHHHHH--HhCCCeeEEEEecCCCcccccEEEECCCCCcCCHHHHHHHHHHHhccccccccc-ccCc
Confidence 9999999999999999998 789999999999999999999999999998 66666677777665543333210 1245
Q ss_pred CCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 233 RNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 233 ~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
.+. ...++.+.|+++|.+.++.+.+ .++++++||||||++|++
T Consensus 143 ~~~-~~~~~~~~Y~~~l~~~~~~~~~-----~~~~~~lkVvvd~~~G~~ 185 (445)
T cd05803 143 EVT-FSEDAIAEHIDKVLALVDVDVI-----KIRERNFKVAVDSVNGAG 185 (445)
T ss_pred cee-ccCchHHHHHHHHHhhcccchh-----hhccCCCEEEEECCCCcH
Confidence 431 2357889999999999875431 012568999999999986
No 12
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=6e-37 Score=299.84 Aligned_cols=184 Identities=25% Similarity=0.275 Sum_probs=149.3
Q ss_pred cccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 023423 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (282)
Q Consensus 72 ~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s 151 (282)
+.+|+.+||||+++. .+|||+++.++|+|||+++.++. ...+|+||||+|.+|++|++++++||++
T Consensus 3 ~~~Fgt~GiRG~~~~------~~lt~e~~~~l~~a~~~~l~~~~--------~~~~VvVg~D~R~~s~~l~~a~~~gL~s 68 (450)
T PRK14314 3 KKLFGTDGVRGRANV------YPMTAEMALQLGRAAAYVFRNGS--------GRHRVVIGKDTRLSGYMFENALIAGLCS 68 (450)
T ss_pred CceeCCCCcceecCC------CCCCHHHHHHHHHHHHHHHHhcC--------CCCcEEEEeCCCcChHHHHHHHHHHHHH
Confidence 578999999999974 24999999999999999997541 1247999999999999999999999999
Q ss_pred CCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChH-HHHHHHHHHHhhhhc--ccccc
Q 023423 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSP-VVEDICGEAARKFAN--RLTKV 228 (282)
Q Consensus 152 ~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~-~i~~i~~~~~~~~~~--~~~~~ 228 (282)
+|++|+++|.+|||+++|++. +++++|||||||||||++||||||++++|...++ ..++|.+.+.++.+. +.. .
T Consensus 69 ~Gv~V~~~g~~ptP~~~~a~~--~~~~~gGI~iTaShnp~~~ngiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~-~ 145 (450)
T PRK14314 69 MGVDVLLVGPLPTPGIAFITR--SMRADAGVVISASHNPYQDNGIKFFSSDGFKLPDEVELRIEAMVLSKDFDWLLPD-A 145 (450)
T ss_pred CCCeEEEecccCCHHHHHHHH--hcCCCEEEEEEeCCCCcccccEEEECCCCCCCCHHHHHHHHHHHhcCCccccccc-h
Confidence 999999999999999999998 7899999999999999999999999999985544 455665555444332 221 1
Q ss_pred ccccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 229 STVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 229 ~~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
...|.+ ....++.+.|+++|.+.++.. +.++++||||||+||++
T Consensus 146 ~~~g~~-~~~~~~~~~Y~~~l~~~id~~--------i~~~~~kVvvD~~~Ga~ 189 (450)
T PRK14314 146 HAVGKA-KRIDDAPGRYIVFLKATFPKG--------LTLKGLKIVLDCANGAA 189 (450)
T ss_pred hcCceE-EEeCchHHHHHHHHHHhhccc--------cCCCCCEEEEECCCchH
Confidence 123442 123478899999999998721 23578999999999986
No 13
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6e-37 Score=301.11 Aligned_cols=181 Identities=31% Similarity=0.448 Sum_probs=150.3
Q ss_pred cccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 023423 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (282)
Q Consensus 72 ~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s 151 (282)
+.+|+.+||||+++ .+||++++.++|+|+|+++.+. + ..+|+||||+|.+|++|+.++++||++
T Consensus 7 ~~~FGT~GiRG~~~-------~~lt~~~~~~~g~a~~~~l~~~-----~----~~~VvVG~D~R~ss~~~~~a~~~gl~~ 70 (464)
T COG1109 7 KLLFGTDGIRGVAG-------EELTPEFALKLGRALGSVLRKK-----G----APKVVVGRDTRLSSEMLAAALAAGLTS 70 (464)
T ss_pred cceECCCccccccC-------CCcCHHHHHHHHHHHHHHHhhc-----C----CCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 35777778999997 4899999999999999999862 1 268999999999999999999999999
Q ss_pred CCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhh-hhccc-ccc
Q 023423 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARK-FANRL-TKV 228 (282)
Q Consensus 152 ~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~-~~~~~-~~~ 228 (282)
+|++|+++|++|||+++|+++ ++++++||||||||||++|||||+++++|. +.++..++|++.+... .+... +
T Consensus 71 ~G~~v~~~g~~pTP~~~f~~~--~~~~~~gvmITASHNP~~yNGiK~~~~~G~~i~~~~e~~Ie~~~~~~~~~~~~~~-- 146 (464)
T COG1109 71 AGIDVYDLGLVPTPAVAFATR--KLGADAGVMITASHNPPEYNGIKFFGSDGGKISDDIEEEIEAILAEEVDLPRPSW-- 146 (464)
T ss_pred CCCeEEEeCCCCCHHHHHHHH--hcCCCeEEEEecCCCCchhCcEEEEcCCCCcCChHHHHHHHHHHhcccccccccc--
Confidence 999999999999999999998 789999999999999999999999999997 6665666665555443 22211 1
Q ss_pred ccccCCCCcccc-hHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 229 STVLRNPPTRVD-FMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 229 ~~~g~~~~~~~d-~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
...|.+ ...+ ..+.|++++++.++.+ ..++++|||+||+||+++
T Consensus 147 ~~~g~~--~~~~~~~~~Y~~~i~~~~~~~--------~~~~~lkVv~d~~nGaa~ 191 (464)
T COG1109 147 GELGRL--KRIPDALDRYIEFIKSLVDVD--------LKLRGLKVVVDCANGAAG 191 (464)
T ss_pred ccCCce--eEcchhHHHHHHHHHHhcccc--------cccCCcEEEEECCCCchh
Confidence 124543 3444 8999999999999853 256789999999999974
No 14
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=6.8e-37 Score=298.91 Aligned_cols=182 Identities=28% Similarity=0.348 Sum_probs=147.7
Q ss_pred cccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 023423 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (282)
Q Consensus 72 ~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s 151 (282)
+.+|+.+||||++++ .+|||+++.++|+|||+++.++ + ..+|+||||+|.+|++|++++++||++
T Consensus 1 ~~~Fgt~GiRG~~~~------~~ltpe~~~~lg~a~a~~l~~~-----~----~~~VvVg~D~R~ss~~l~~a~~~gL~s 65 (443)
T PRK10887 1 RKYFGTDGIRGKVGQ------APITPDFVLKLGWAAGKVLARQ-----G----RPKVLIGKDTRISGYMLESALEAGLAA 65 (443)
T ss_pred CCccCCCccceecCC------CCCCHHHHHHHHHHHHHHHHhC-----C----CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 468999999999973 2599999999999999999753 1 257999999999999999999999999
Q ss_pred CCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChHH-HHHHHHHHHhhhhcccccccc
Q 023423 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSPV-VEDICGEAARKFANRLTKVST 230 (282)
Q Consensus 152 ~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~~-i~~i~~~~~~~~~~~~~~~~~ 230 (282)
+|++|+++|.+|||+++|++. .++++|||||||||||++||||||++++|....++ +++|.+.+ ++.+.+... ..
T Consensus 66 ~Gv~V~~~g~~pTP~~~~a~~--~~~~~gGI~ITaShnp~~~ngiK~~~~~G~~i~~~~~~~ie~~~-~~~~~~~~~-~~ 141 (443)
T PRK10887 66 AGVDVLLTGPMPTPAVAYLTR--TLRAEAGIVISASHNPYYDNGIKFFSADGTKLPDEVELAIEAEL-DKPLTCVES-AE 141 (443)
T ss_pred CCCeEEEECCcChHHHHHHHH--HcCCCEEEEEecCCCCcccCeEEEECCCCCCCCHHHHHHHHHHH-hCcCCcccc-cc
Confidence 999999999999999999998 78999999999999999999999999999855444 55554444 333322111 12
Q ss_pred ccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 231 VLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 231 ~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
.|.+ ....+..+.|+++|++.++.. +++++||||+||+||++
T Consensus 142 ~g~~-~~~~~~~~~Y~~~l~~~id~~--------i~~~~~kVvvD~~~G~~ 183 (443)
T PRK10887 142 LGKA-SRINDAAGRYIEFCKSTFPNE--------LSLRGLKIVVDCANGAT 183 (443)
T ss_pred CceE-EEcCChHHHHHHHHHHhcCcc--------cccCCCEEEEECCCchH
Confidence 3543 123367899999999998731 23579999999999986
No 15
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=100.00 E-value=6.1e-37 Score=300.41 Aligned_cols=178 Identities=24% Similarity=0.325 Sum_probs=145.3
Q ss_pred cccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 023423 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (282)
Q Consensus 72 ~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s 151 (282)
-.+|+.+||||++++ +|||+++.++|+|||+++.. .+|+||||+|.+|++|++++++||++
T Consensus 4 ~~~Fg~~GiRG~~~~-------~lt~~~~~~~~~a~a~~l~~------------~~VvVg~D~R~ss~~l~~a~a~gL~s 64 (456)
T PRK15414 4 LTCFKAYDIRGKLGE-------ELNEDIAWRIGRAYGEFLKP------------KTIVLGGDVRLTSETLKLALAKGLQD 64 (456)
T ss_pred cceecccCcceeeCC-------CcCHHHHHHHHHHHHHHhcC------------CeEEEEECCCCChHHHHHHHHHHHHH
Confidence 368999999999984 89999999999999999852 36999999999999999999999999
Q ss_pred CCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChHH--HHHHHHHHHhhhhccccccc
Q 023423 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSPV--VEDICGEAARKFANRLTKVS 229 (282)
Q Consensus 152 ~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~~--i~~i~~~~~~~~~~~~~~~~ 229 (282)
+|++|+++|++|||+++|+++ +++++|||||||||||++|||+|++.++|.+.+++ ++++.+.+.++.+.+... .
T Consensus 65 ~Gi~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHNP~~~NG~Ki~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~-~ 141 (456)
T PRK15414 65 AGVDVLDIGMSGTEEIYFATF--HLGVDGGIEVTASHNPMDYNGMKLVREGARPISGDTGLRDVQRLAEANDFPPVDE-T 141 (456)
T ss_pred CCCeEEEeCCcChHHHHHhhh--ccCCCeEEEEecCCCCCCCCCEEeecCCCcccCcHHHHHHHHHHHhcCCcccccc-c
Confidence 999999999999999999997 78999999999999999999999999988755544 345433333232222110 1
Q ss_pred cccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 230 TVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 230 ~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
..|.+ ...++.+.|+++|.+.++.+ .++++|||+||+||+++
T Consensus 142 ~~g~~--~~~~~~~~Yi~~l~~~id~~---------~~~~lkVvvD~~~G~~~ 183 (456)
T PRK15414 142 KRGRY--QQINLRDAYVDHLFGYINVK---------NLTPLKLVINSGNGAAG 183 (456)
T ss_pred CCCcE--EecCcHHHHHHHHHHhcccc---------cCCCCEEEEECCCCcch
Confidence 23442 34578899999999998742 24689999999999873
No 16
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=100.00 E-value=7.2e-37 Score=299.70 Aligned_cols=183 Identities=21% Similarity=0.183 Sum_probs=150.4
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 023423 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (282)
Q Consensus 74 Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~G 153 (282)
.|+.+||||+++ ++|||+++.++|+|||+++.+.. ...++|+||||+|.+|++|++++++||+++|
T Consensus 2 ~Fgt~GiRG~~~-------~~lt~~~~~~lg~a~~~~l~~~~-------~~~~~Vvvg~D~R~ss~~l~~a~~~gL~s~G 67 (461)
T cd05800 2 KFGTDGWRGIIA-------EDFTFENVRRVAQAIADYLKEEG-------GGGRGVVVGYDTRFLSEEFARAVAEVLAANG 67 (461)
T ss_pred CccCcccccccc-------CCccHHHHHHHHHHHHHHHHHhC-------CCCCeEEEEeCCCcCcHHHHHHHHHHHHHCC
Confidence 467778999998 48999999999999999997531 0125799999999999999999999999999
Q ss_pred CcEEEe-ccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhccccccccc
Q 023423 154 CLVFDM-GLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFANRLTKVSTV 231 (282)
Q Consensus 154 v~V~dl-G~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~~~~~~~~~ 231 (282)
++|+++ |.+|||+++|++. +++++|||||||||||++||||||++++|. +.+.+.++|++.+.+....+... ...
T Consensus 68 ~~V~~~~g~~pTP~~~~a~~--~~~~~gGI~ITaSHnp~~~ngiK~~~~~G~~i~~~~~~~ie~~~~~~~~~~~~~-~~~ 144 (461)
T cd05800 68 IDVYLSDRPVPTPAVSWAVK--KLGAAGGVMITASHNPPEYNGVKVKPAFGGSALPEITAAIEARLASGEPPGLEA-RAE 144 (461)
T ss_pred CEEEEcCCCCCchHHHHHHH--HhCCCeeEEEccCCCCcccCeEEEeCCCCCcCChHHHHHHHHHHhhcccccccc-ccC
Confidence 999999 7999999999998 789999999999999999999999999998 55556667766655443322111 124
Q ss_pred cCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 232 LRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 232 g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
|.+ ...|..+.|+++|.+.++.+. +++++|||||||++|+++
T Consensus 145 g~i--~~~~~~~~Y~~~l~~~~~~~~-------i~~~~~kivvd~~~G~~~ 186 (461)
T cd05800 145 GLI--ETIDPKPDYLEALRSLVDLEA-------IREAGLKVVVDPMYGAGA 186 (461)
T ss_pred Cce--eecCCHHHHHHHHHHHhChhh-------hhcCCceEEEeCCCCCcH
Confidence 553 345888999999999987543 245799999999999874
No 17
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=100.00 E-value=1.1e-36 Score=297.32 Aligned_cols=182 Identities=27% Similarity=0.293 Sum_probs=146.8
Q ss_pred ccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCC
Q 023423 75 QNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGC 154 (282)
Q Consensus 75 f~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv 154 (282)
|+.+||||+++. .+|||+++.++|+|||+++.++. ....+|+||||+|.+|++|++++++||+++|+
T Consensus 1 Fgt~giRG~~~~------~~ltp~~~~~l~~a~~~~l~~~~-------~~~~~V~Vg~D~R~~s~~l~~a~~~gL~s~G~ 67 (443)
T TIGR01455 1 FGTDGVRGRAGQ------EPLTAELALLLGAAAGRVLRQGR-------DTAPRVVIGKDTRLSGYMLENALAAGLNSAGV 67 (443)
T ss_pred CCCCccceecCC------CCCCHHHHHHHHHHHHHHHHhcC-------CCCCeEEEEeCCCcChHHHHHHHHHHHHHCCC
Confidence 677889999973 47999999999999999998641 01236999999999999999999999999999
Q ss_pred cEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCC-hHHHHHHHHHHHhhh-hcccccccccc
Q 023423 155 LVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLT-SPVVEDICGEAARKF-ANRLTKVSTVL 232 (282)
Q Consensus 155 ~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~-~~~i~~i~~~~~~~~-~~~~~~~~~~g 232 (282)
+|+++|.+|||+++|++. +++++|||||||||||++||||||++++|... +++.++|.+.+.++. +.+.+. ...|
T Consensus 68 ~V~~~g~~pTP~~~~av~--~~~~~gGI~iTaSHnP~~~nGiK~~~~~G~~i~~~~~~~I~~~~~~~~~~~~~~~-~~~g 144 (443)
T TIGR01455 68 DVLLLGPLPTPAVAYLTR--TLRADAGVMISASHNPYEDNGIKFFGPGGFKLDDATEAAIEALLDEADPLPRPES-EGLG 144 (443)
T ss_pred eEEEeCCcCcHHHHHHHH--hcCCCeEEEEecCCCCcccCcEEEecCCCCcCCHHHHHHHHHHHhcCccccCCCc-cCce
Confidence 999999999999999998 78999999999999999999999999999844 445666655544332 232221 1234
Q ss_pred CCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 233 RNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 233 ~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
.+ ....++.+.|+++|++.++.. +++++||||+||+||++
T Consensus 145 ~~-~~~~~~~~~Y~~~l~~~i~~~--------~~~~~lkVvvD~~~G~~ 184 (443)
T TIGR01455 145 RV-KRYPDAVGRYIEFLKSTLPRG--------LTLSGLKVVLDCANGAA 184 (443)
T ss_pred EE-EEcccHHHHHHHHHHHHhhcc--------cccCCCEEEEECCCchH
Confidence 43 123478899999999988731 34578999999999985
No 18
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=5.5e-37 Score=298.44 Aligned_cols=173 Identities=27% Similarity=0.290 Sum_probs=141.2
Q ss_pred ccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 023423 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (282)
Q Consensus 73 ~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~ 152 (282)
.+|+.+||||+++ ++|||+++.++|+|||+++.. .+|+||||+|.+|++|++++++||+++
T Consensus 4 ~~Fg~~gIRG~~~-------~~ltpe~~~~lg~a~~~~l~~------------~~VvVg~D~R~ss~~l~~a~~~gL~s~ 64 (429)
T PRK14322 4 KYFGTDGIRGVFG-------ETLTDELAFKVGKALGEIVGE------------GKVIVGKDTRVSGDSLEAAISAGLTSM 64 (429)
T ss_pred ceecCCCcceecC-------CCcCHHHHHHHHHHHhEEecC------------CcEEEEeCCCcCHHHHHHHHHHHHHHC
Confidence 5788889999998 489999999999999999842 249999999999999999999999999
Q ss_pred CCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhccccccccc
Q 023423 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFANRLTKVSTV 231 (282)
Q Consensus 153 Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~~~~~~~~~ 231 (282)
|++|+++|++|||+++|+++ +++ +|||||||||||++||||||+ ++|. +..+.+++|.+.+.++.+.+.. ..
T Consensus 65 G~~V~~~g~~pTP~~~~av~--~~~-~gGI~ITaSHnP~~~nGiK~~-~~G~~i~~~~~~~ie~~~~~~~~~~~~---~~ 137 (429)
T PRK14322 65 GVDVLLCGILPTPAVALLTR--ITR-SFGVVISASHNPPEYNGIKVL-KGGYKIPDEMEVEIEERIESGYFPVRS---VV 137 (429)
T ss_pred CCeEEEecCcCHHHHHHHHh--ccC-CceEEEECCCCChHhCCEEEe-cCCCcCCHHHHHHHHHHHhcCCCcccc---Cc
Confidence 99999999999999999987 554 999999999999999999999 8887 5555556665544433332211 13
Q ss_pred cCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 232 LRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 232 g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
|.+ ....+..+.|+++|.+.++. .+++++||||||+||++
T Consensus 138 g~~-~~~~~~~~~Y~~~l~~~v~~---------~~~~~~kVvvD~~nG~~ 177 (429)
T PRK14322 138 GRT-KSFREGRDMYIGAVLEMFRD---------LDLTGEMVSLDLANGAT 177 (429)
T ss_pred eeE-EeccchHHHHHHHHHHhhcc---------cccCCCEEEEECCCChH
Confidence 442 12336889999999998862 23578999999999986
No 19
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1e-36 Score=298.28 Aligned_cols=173 Identities=27% Similarity=0.305 Sum_probs=146.0
Q ss_pred ccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 023423 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (282)
Q Consensus 73 ~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~ 152 (282)
.+|+.+||||+++ ++|||+++.++|+|||+++.. .+|+||||+|.+|++|++++++||+++
T Consensus 3 ~~Fgt~GiRG~~~-------~~lt~e~~~~lg~a~~~~l~~------------~~VvVg~D~R~~s~~l~~a~~~gL~s~ 63 (449)
T PRK14321 3 KYFGTSGIREVVN-------EKLTPELALKVGLALGTYLGG------------GKVVVGKDTRTSSEMLKNALISGLLST 63 (449)
T ss_pred cccccCCeeEEcC-------CCCCHHHHHHHHHHHHhhccC------------CcEEEEeCCCCChHHHHHHHHHHHHHC
Confidence 6888889999998 489999999999999999852 369999999999999999999999999
Q ss_pred CCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhcc-cccccc
Q 023423 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFANR-LTKVST 230 (282)
Q Consensus 153 Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~~-~~~~~~ 230 (282)
|++|+++|++|||+++|+++ +++++|||||||||||++||||||++++|. +.++++++|.+.+.++.+.+ .+. .
T Consensus 64 G~~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHnP~~~nGiK~~~~~G~~i~~~~~~~ie~~~~~~~~~~~~~~--~ 139 (449)
T PRK14321 64 GVDVIDIGLAPTPLTGFAIK--LYNADAGVTITASHNPPEYNGIKVWQRNGMAYTPEMENELERIIESGNFKRVPWN--E 139 (449)
T ss_pred CCeEEEeCCcCCcHHHHHHH--hcCCCeEEEEEeCCCCHHHCcEEEECCCCCcCCHHHHHHHHHHHhcccccccccc--c
Confidence 99999999999999999998 789999999999999999999999999998 44444556655444443332 221 2
Q ss_pred ccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 231 VLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 231 ~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
.|.+ ...++.+.|+++|++.++. .+++|||+||+||++
T Consensus 140 ~g~~--~~~~~~~~Y~~~l~~~~~~-----------~~~~kVvvD~~~G~~ 177 (449)
T PRK14321 140 IGTL--RRADPKEEYIKAALEMIKL-----------ENSYTVVVDSGNGAG 177 (449)
T ss_pred Ccee--eecccHHHHHHHHHHhcCc-----------CCCCEEEEECCCchH
Confidence 4543 3458899999999999862 268999999999986
No 20
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.4e-36 Score=293.98 Aligned_cols=181 Identities=20% Similarity=0.247 Sum_probs=144.4
Q ss_pred ccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 023423 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (282)
Q Consensus 73 ~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~ 152 (282)
.+|+.+||||+++. .+|||+++.++|+|||+++.++ + ...+|+||||+|.+|++|++++++||+++
T Consensus 3 ~~Fgt~giRG~~~~------~~ltpe~~~~lg~a~g~~l~~~-----~---~~~~VvVg~D~R~ss~~l~~a~~~gL~s~ 68 (443)
T PRK14320 3 KYFGTDGIRGEVAN------STITVEFTQKLGNAVGSLINQK-----N---YPKFVIVGQDTRSSGGFLKFALVSGLNAA 68 (443)
T ss_pred cccCCCCeeeEcCC------CCCCHHHHHHHHHHHHHhHhhC-----C---CCCeEEEEECCCcCHHHHHHHHHHHHHHC
Confidence 58888899999963 4799999999999999999653 1 12469999999999999999999999999
Q ss_pred CCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhccccccccc
Q 023423 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFANRLTKVSTV 231 (282)
Q Consensus 153 Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~~~~~~~~~ 231 (282)
|++|+++|++|||+++|+++ +++++|||||||||||++||||||++++|. +.++..++|++.+ ++.+.+... ...
T Consensus 69 G~~V~d~g~~pTP~~~~av~--~~~~~gGI~ITaSHNp~~~nGiK~~~~~G~~i~~~~~~~Ie~~~-~~~~~~~~~-~~~ 144 (443)
T PRK14320 69 GIDVLDLGVVPTPVVAFMTV--KHRAAAGFVITASHNKFTDNGIKLFSSNGFKLDDALEEEVEDMI-DGDFIYQPQ-FKF 144 (443)
T ss_pred CCEEEEecccCchHHHHHHH--HcCCceEEEEEeCCCchHHCeEEEECCCCCcCCHHHHHHHHHHH-hcccccccc-ccC
Confidence 99999999999999999998 789999999999999999999999999998 5555555665443 332222110 123
Q ss_pred cCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 232 LRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 232 g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
|.+. ...++.+.|+++|.+.++. . .+ .++|||+||+||++
T Consensus 145 g~~~-~~~~~~~~Y~~~l~~~~~~-~-------~~-~~~kVvvD~~nG~~ 184 (443)
T PRK14320 145 GSYK-ILANAIDEYIESIHSRFAK-F-------VN-YKGKVVVDCAHGAA 184 (443)
T ss_pred cceE-eccchHHHHHHHHHHHHHh-h-------cc-CCCEEEEECCCchH
Confidence 4431 2346889999999988761 1 12 25799999999986
No 21
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=4.9e-36 Score=292.19 Aligned_cols=174 Identities=31% Similarity=0.410 Sum_probs=145.7
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 023423 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (282)
Q Consensus 74 Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~G 153 (282)
+|+.+||||+++ ++|||+++.++|+|||++++ + .+|+||||+|.+|++|++++++||+++|
T Consensus 1 ~Fgt~giRG~~~-------~~lt~~~~~~l~~a~~~~l~-~-----------~~VvVg~D~R~~s~~l~~a~~~gL~~~G 61 (439)
T cd03087 1 LFGTSGIRGVVG-------EELTPELALKVGKALGTYLG-G-----------GTVVVGRDTRTSGPMLKNAVIAGLLSAG 61 (439)
T ss_pred CcCcCceeeECC-------CCcCHHHHHHHHHHHHhhcc-C-----------CeEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence 588888999998 48999999999999999986 2 4799999999999999999999999999
Q ss_pred CcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhcccccccccc
Q 023423 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFANRLTKVSTVL 232 (282)
Q Consensus 154 v~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~~~~~~~~~g 232 (282)
++|+++|.+|||+++|+++ +++ +|||||||||||++||||||++++|. +.+++.++|++.+.++.+.+.. .+..|
T Consensus 62 ~~V~~~g~~~tP~~~~~v~--~~~-~gGi~ItaShnp~~~ngiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~-~~~~g 137 (439)
T cd03087 62 CDVIDIGIVPTPALQYAVR--KLG-DAGVMITASHNPPEYNGIKLVNPDGTEFSREQEEEIEEIIFSERFRRVA-WDEVG 137 (439)
T ss_pred CeEEEcCccChHHHHHHHH--hcC-CceEEEEeCCCCHHHCcEEEECCCCCcCCHHHHHHHHHHHhcCCccccc-cccCe
Confidence 9999999999999999997 678 99999999999999999999999998 5566667776665544332211 01235
Q ss_pred CCCCcccc-hHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 233 RNPPTRVD-FMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 233 ~~~~~~~d-~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
.+ ...| +.+.|+++|.+.++.+ .+++||||+||+||++
T Consensus 138 ~~--~~~~~~~~~Y~~~l~~~~~~~---------~~~~lkIvid~~~G~~ 176 (439)
T cd03087 138 SV--RREDSAIDEYIEAILDKVDID---------GGKGLKVVVDCGNGAG 176 (439)
T ss_pred eE--EecCccHHHHHHHHHHhcCcc---------cCCCCEEEEECCCCch
Confidence 43 3345 8999999999998642 2468999999999986
No 22
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=304.23 Aligned_cols=221 Identities=19% Similarity=0.236 Sum_probs=159.8
Q ss_pred ccceeeeecccCccccccccc----chhhhhh--ccccccccc-eeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhc
Q 023423 43 SHSIKFTHVKSSVTDKYNEVV----VDEEMDR--IRRLQNGSD-VRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSL 115 (282)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~Lf~gtd-IRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~ 115 (282)
+.|+..+ ..+.+++..+.+ +.+|+.+ .++|.|||+ |||+++.| ...+|+..|.++++|||++|.+.+
T Consensus 10 ~~wl~~~--~~~~~~~~~~~~~~~~~~~~l~~~f~~~i~FGT~GiRG~~g~~----~~~~n~~~v~~~~~a~a~~l~~~~ 83 (584)
T PTZ00150 10 ELWLKWD--KDPETRKEIEELLASKDEEELKRRFLKRMEFGTAGLRGKMGAG----FNCMNDLTVQQTAQGLCAYVIETF 83 (584)
T ss_pred HHHHcCC--CCHHHHHHHHHHHhCCCHHHHHHHhCCCCcccCcccccccCCC----CcHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677766 556666666665 3444444 466777776 99999853 234888888999999999997643
Q ss_pred cccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEec-cCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCc
Q 023423 116 ENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMG-LATTPACFMSTLLPPFAYDASIMMTASHLPYTRN 194 (282)
Q Consensus 116 ~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG-~~pTP~l~fav~~~~~~a~gGImITASHNP~~~N 194 (282)
.. .....+|+||||+|.+|++|+++++++|+++|++|+++| ++|||+++|+++ +++|+|||||||||||++||
T Consensus 84 ~~----~~~~~~VvVg~D~R~~S~~fa~~~a~~L~a~Gi~V~~~g~~~pTP~lsfav~--~~~a~gGImITASHNP~eyN 157 (584)
T PTZ00150 84 GQ----ALKSRGVVIGYDGRYHSRRFAEITASVFLSKGFKVYLFGQTVPTPFVPYAVR--KLKCLAGVMVTASHNPKEDN 157 (584)
T ss_pred cc----ccCCCcEEEEeCCCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcHHHHHHHH--HhCCCeEEEEeccCCCCCCC
Confidence 10 001246999999999999999999999999999999997 999999999998 78999999999999999999
Q ss_pred eEEEeeCCCC-CChHHHHHHHHHHHhhh--hccccccccccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCe
Q 023423 195 GLKFFTKKGG-LTSPVVEDICGEAARKF--ANRLTKVSTVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQ 271 (282)
Q Consensus 195 GiK~~~~~G~-l~~~~i~~i~~~~~~~~--~~~~~~~~~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lk 271 (282)
||||++++|. +.++..+++.+.+.+.. ....+.....+.+.....++.+.|+++|++.++.+. ++.+++|
T Consensus 158 GiK~~~~~G~~i~~~~~~~i~~~Ie~~~~~~~~~~~~~~~~~~~~~~~d~~~~Yi~~l~~~i~~~~-------i~~~~lk 230 (584)
T PTZ00150 158 GYKVYWSNGAQIIPPHDKNISAKILSNLEPWSSSWEYLTETLVEDPLAEVSDAYFATLKSEYNPAC-------CDRSKVK 230 (584)
T ss_pred CEEEeCCCCcccCCcccHHHHHHHHHhccccccchhhhccccccchhhhhHHHHHHHHHhhcChhh-------hccCCCe
Confidence 9999999998 54433333333222211 110111000011101124778999999999887532 2447899
Q ss_pred EEEeCCCCCCC
Q 023423 272 VPFFTSLFVSY 282 (282)
Q Consensus 272 VvvD~~~~~~~ 282 (282)
||+||++|++.
T Consensus 231 Iv~d~~~G~g~ 241 (584)
T PTZ00150 231 IVYTAMHGVGT 241 (584)
T ss_pred EEEeCCCCccH
Confidence 99999999863
No 23
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=100.00 E-value=1.3e-35 Score=290.21 Aligned_cols=175 Identities=23% Similarity=0.289 Sum_probs=142.9
Q ss_pred ccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCC
Q 023423 75 QNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGC 154 (282)
Q Consensus 75 f~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv 154 (282)
|+.+||||+++ ++|||+++.++|+|||+++.+. + ..+|+||||+|.+|++|++++++||+++||
T Consensus 1 f~~~giRG~~~-------~~lt~~~v~~l~~a~~~~l~~~-----~----~~~VvVg~D~R~~s~~l~~a~~~gL~s~G~ 64 (445)
T PRK09542 1 IKAYDVRGVVG-------EQIDEDLVRDVGAAFARLMRAE-----G----ATTVVIGHDMRDSSPELAAAFAEGVTAQGL 64 (445)
T ss_pred CCccccccccC-------CCcCHHHHHHHHHHHHHHHHHc-----C----CCeEEEEeCCCCCHHHHHHHHHHHHHHCCC
Confidence 67889999997 4899999999999999999753 1 257999999999999999999999999999
Q ss_pred cEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChHH--HHHHHHHHHhhhhcccccccccc
Q 023423 155 LVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSPV--VEDICGEAARKFANRLTKVSTVL 232 (282)
Q Consensus 155 ~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~~--i~~i~~~~~~~~~~~~~~~~~~g 232 (282)
+|+++|++|||+++|+++ +++| +||||||||||++|||+|++.++|.+.+++ ++++.+.+.+.. . .+. ...|
T Consensus 65 ~V~~lg~~pTP~~~~av~--~~~~-~Gi~iTaSHNP~~~nG~Ki~~~~~~~~~~~~~i~~i~~~~~~~~-~-~~~-~~~g 138 (445)
T PRK09542 65 DVVRIGLASTDQLYFASG--LLDC-PGAMFTASHNPAAYNGIKLCRAGAKPVGQDTGLAAIRDDLIAGV-P-AYD-GPPG 138 (445)
T ss_pred EEEEeCCCCCHHHHheec--ccCC-CEEEEcCCCCCCccCcEEEecCCCcccCchhHHHHHHHHHhccc-c-ccc-CCCC
Confidence 999999999999999997 7788 699999999999999999988877755554 456544443321 0 111 1235
Q ss_pred CCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 233 RNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 233 ~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
.+ ...|+.+.|+++|++.++.+ .+++|||||||++|++.
T Consensus 139 ~~--~~~~~~~~Y~~~l~~~i~~~---------~i~~lkVvvd~~~Ga~~ 177 (445)
T PRK09542 139 TV--TERDVLADYAAFLRSLVDLS---------GIRPLKVAVDAGNGMGG 177 (445)
T ss_pred ce--eccChHHHHHHHHHHhcccc---------cCCCCEEEEECCCCchh
Confidence 43 34588999999999998742 23689999999999863
No 24
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1e-35 Score=289.60 Aligned_cols=173 Identities=27% Similarity=0.301 Sum_probs=137.2
Q ss_pred ccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 023423 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (282)
Q Consensus 73 ~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~ 152 (282)
.+|+.+||||+++ ++|||+++.+||+|||+++. .+|+||||+|.+|++|++++++||+++
T Consensus 2 ~~Fgt~gIRG~~~-------~~ltpe~~~~lg~a~g~~~~-------------~~V~Vg~D~R~ss~~l~~a~~~gL~s~ 61 (430)
T PRK14319 2 RLFGTDGIRGVVN-------EFLTPEIAFRLGNALGNMVD-------------KKIFIAKDTRASGDMLEAALVAGITSA 61 (430)
T ss_pred cccCCCCcceecC-------CCcCHHHHHHHHHHHHhccC-------------CcEEEEeCCCCChHHHHHHHHHHHHHC
Confidence 5889999999998 48999999999999999984 259999999999999999999999999
Q ss_pred CCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChHH-HHHHHHHHHhhhhccccccccc
Q 023423 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSPV-VEDICGEAARKFANRLTKVSTV 231 (282)
Q Consensus 153 Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~~-i~~i~~~~~~~~~~~~~~~~~~ 231 (282)
|++|+|+|++|||+++|++. . .+.|||||||||||++||||||+. +|...+++ +++| +...+.+....+ ...
T Consensus 62 G~~V~d~g~~pTP~~~~~~~--~-~~~gGi~ItaSHnp~~~ngiK~~~-~G~~i~~~~~~~i-e~~~~~~~~~~~--~~~ 134 (430)
T PRK14319 62 GADVYRCGVLPTPALALITK--L-EDAAGVMISASHNPPEYNGLKVLM-RGYKLPDEVEERI-EKEMNEIHYSPY--NEV 134 (430)
T ss_pred CCeEEEeCCcCcHHHHHHHh--c-cCceEEEEEeCCCChHHCCEEEec-CCCCCCHHHHHHH-HHHHhccCCccc--ccC
Confidence 99999999999999999764 3 345999999999999999999995 78744444 4455 443222111111 123
Q ss_pred cCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 232 LRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 232 g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
|.+ ....+..+.|+++|++.++. .+++++||||||+||+++
T Consensus 135 g~~-~~~~~~~~~Y~~~l~~~~~~---------~~~~~~kvvvD~~nGa~~ 175 (430)
T PRK14319 135 GCV-IDYKLAFEEYFNYIKQQYEG---------LDLSGIKIVVDVANGATY 175 (430)
T ss_pred eeE-EeccchHHHHHHHHHHhcCc---------cccCCCEEEEECCCChHH
Confidence 442 12335779999999998862 234689999999999863
No 25
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=100.00 E-value=5.5e-35 Score=286.76 Aligned_cols=176 Identities=27% Similarity=0.368 Sum_probs=141.5
Q ss_pred ccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCC
Q 023423 75 QNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGC 154 (282)
Q Consensus 75 f~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv 154 (282)
|+.+||||++ + +|||+++.++|+|||+++.+.. ..+.|+||||+|.+|++|+++++++|+++|+
T Consensus 2 Fgt~GiRG~~-~-------~ltpe~~~~l~~a~~~~l~~~~--------~~~~VvVG~D~R~~s~~l~~a~~~gL~~~Gv 65 (459)
T cd03088 2 FGTSGLRGLV-T-------DLTDEVCYAYTRAFLQHLESKF--------PGDTVAVGRDLRPSSPRIAAACAAALRDAGF 65 (459)
T ss_pred CCCcccceee-c-------cCCHHHHHHHHHHHHHHHHHhC--------CCCeEEEEeCCCcchHHHHHHHHHHHHHCCC
Confidence 6778899998 3 7999999999999999997531 1257999999999999999999999999999
Q ss_pred cEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChHHHHHHHHHHHhhhhccccccccccCC
Q 023423 155 LVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSPVVEDICGEAARKFANRLTKVSTVLRN 234 (282)
Q Consensus 155 ~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~~i~~i~~~~~~~~~~~~~~~~~~g~~ 234 (282)
+|+++|.+|||+++|++. ++++ +||||||||||++||||||++++|.+.+++.++|.+.. +. +.+.+. ...+..
T Consensus 66 ~V~~~g~~pTP~~~~a~~--~~~~-ggI~ITaSHnp~~~nGiK~~~~~G~~~~~~e~~I~~~~-~~-~~~~~~-~~~~~~ 139 (459)
T cd03088 66 RVVDCGAVPTPALALYAM--KRGA-PAIMVTGSHIPADRNGLKFYRPDGEITKADEAAILAAL-VE-LPEALF-DPAGAL 139 (459)
T ss_pred EEEEeCCCCCHHHHHHHH--HcCC-cEEEEeCCCCCCCCCCEEEECCCCCCChHHHHHHHHHH-Hh-hccccc-cccccC
Confidence 999999999999999998 5655 89999999999999999999999987776665665442 22 222211 112111
Q ss_pred CCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 235 PPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 235 ~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
.....+..+.|+++|.+.++.. .++++||||||++|++
T Consensus 140 ~~~~~~~~~~Y~~~l~~~i~~~---------~~~~lkIvvD~~~G~~ 177 (459)
T cd03088 140 LPPDTDAADAYIARYTDFFGAG---------ALKGLRIGVYQHSSVG 177 (459)
T ss_pred CcccchHHHHHHHHHHHHhCcc---------ccCCCEEEEECCCCCH
Confidence 1234578899999999988732 2468999999999986
No 26
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=100.00 E-value=5e-35 Score=292.61 Aligned_cols=186 Identities=23% Similarity=0.254 Sum_probs=144.9
Q ss_pred cccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 023423 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (282)
Q Consensus 72 ~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s 151 (282)
+.+|+.+||||+++. .+||++++.++|+||++++.+. + ...+|+||||+|.+|++|++++++||++
T Consensus 38 ~~~FGT~GiRG~~~~------~~lt~~~~~~i~~a~a~~~~~~-----~---~~~~VvVG~D~R~sS~~~~~a~a~gL~s 103 (543)
T TIGR01132 38 AVKFGTSGHRGSALR------GTFNEPHILAIAQAIAEYRAAQ-----G---ITGPLYIGKDTHALSEPAFISVLEVLAA 103 (543)
T ss_pred ccCCcCccccCCccc------CccCHHHHHHHHHHHHHHHHHh-----C---CCCcEEEEeCCCcCCHHHHHHHHHHHHH
Confidence 356777779999863 3699999999999999999754 2 1134999999999999999999999999
Q ss_pred CCCcEEEe---ccCChHHHHHHhhcCCCC-----CCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHH---h
Q 023423 152 AGCLVFDM---GLATTPACFMSTLLPPFA-----YDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAA---R 219 (282)
Q Consensus 152 ~Gv~V~dl---G~~pTP~l~fav~~~~~~-----a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~---~ 219 (282)
+|++|+++ |++|||+++|+++ +++ |.+||||||||||++||||||++++|. +.++..++|++.+. +
T Consensus 104 ~Gi~V~~~~~~G~~pTP~~~~av~--~~~~~~~~~~gGI~ITASHNP~e~NGiK~~~~~G~~i~~~~~~~Ie~~i~~~~~ 181 (543)
T TIGR01132 104 NGVEVIVQENNGFTPTPAVSHAIL--THNKKGEPLADGIVITPSHNPPEDGGIKYNPPNGGPADTEATQAIEDRANALLA 181 (543)
T ss_pred CCCEEEEeCCCCcCCchHHHHHHH--HhcccccccceEEEEeCCCCCCccCeEEEECCCCCCCChHHHHHHHHHHHHhhh
Confidence 99999995 8999999999997 555 789999999999999999999999998 55554556654432 1
Q ss_pred ---hhhccc-cc-cccccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 220 ---KFANRL-TK-VSTVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 220 ---~~~~~~-~~-~~~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
+.+.+. .. ....|. +...|+.+.|+++|.+.++.+. ++++++||||||+||++.
T Consensus 182 ~~~e~~~~~~~~~~~~~g~--~~~~d~~~~Y~~~l~~~i~~~~-------i~~~~lkVvvD~~~Ga~~ 240 (543)
T TIGR01132 182 NGLKGVKRLPLAQALASGT--VKAHDLVQPYVDGLADIVDMAA-------IQKAGLRLGVDPLGGSGI 240 (543)
T ss_pred cccccccccChhhhhccCc--eecCCcHHHHHHHHHHhhhhhh-------hhcCCceEEEeCCCCCcH
Confidence 112111 10 011233 2345889999999999987543 345789999999999863
No 27
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=100.00 E-value=5e-35 Score=288.62 Aligned_cols=191 Identities=19% Similarity=0.184 Sum_probs=148.8
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 023423 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (282)
Q Consensus 74 Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~G 153 (282)
.|+.+||||++++| ..+||++++.+||+|||+++++... +....+|+||||+|.+|++|++++++||+++|
T Consensus 3 ~Fgt~giRg~~~~~----~~~l~~~~~~~l~~a~~~~l~~~~~-----~~~~~~V~Vg~D~R~~s~~~~~a~~~gL~s~G 73 (487)
T cd05799 3 EFGTAGLRGKMGAG----TNRMNDYTVRQATQGLANYLKKKGP-----DAKNRGVVIGYDSRHNSREFAELTAAVLAANG 73 (487)
T ss_pred cccCcccccccCCC----CccccHHHHHHHHHHHHHHHHHhcc-----cccCCeEEEEcCCCCChHHHHHHHHHHHHHCC
Confidence 45666799999752 2359999999999999999985410 00125799999999999999999999999999
Q ss_pred CcEEEec-cCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHh-hhhcc---ccc
Q 023423 154 CLVFDMG-LATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAAR-KFANR---LTK 227 (282)
Q Consensus 154 v~V~dlG-~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~-~~~~~---~~~ 227 (282)
++|+++| .+|||+++|++. +++++|||||||||||++||||||++++|. +.+++.++|++.+.+ ..+.+ .+.
T Consensus 74 i~V~~~g~~~ptP~~~~~i~--~~~~~gGI~iTaSHnp~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~ 151 (487)
T cd05799 74 IKVYLFDDLRPTPLLSFAVR--HLGADAGIMITASHNPKEYNGYKVYWEDGAQIIPPHDAEIAEEIEAVLEPLDIKFEEA 151 (487)
T ss_pred CEEEEeCCCCCCcHHHHHHH--HhCCCeeEEEEeeCCCcccCCEEEecCCCCcCCCHHHHHHHHHHHhcccccccchhhh
Confidence 9999999 999999999998 789999999999999999999999999998 555555666655544 12222 111
Q ss_pred cccccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 228 VSTVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 228 ~~~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
...|.+.....++.+.|++.|++.++...+ ++.++|||||||++|+++
T Consensus 152 -~~~g~~~~~~~~~~~~Y~~~l~~~i~~~~~------~~~~~~kVvvD~~~G~~~ 199 (487)
T cd05799 152 -LDSGLIKYIGEEIDDAYLEAVKKLLVNPEL------NEGKDLKIVYTPLHGVGG 199 (487)
T ss_pred -ccCCceEEcchHHHHHHHHHHHhhhccccc------ccCCCCcEEEeCCCCccH
Confidence 124543111136889999999999975321 245789999999999873
No 28
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=100.00 E-value=5.4e-35 Score=243.32 Aligned_cols=133 Identities=35% Similarity=0.506 Sum_probs=113.7
Q ss_pred cccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 023423 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (282)
Q Consensus 72 ~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s 151 (282)
+.+|+.+||||++++ .+|||+++.+++++|++++.+.. ...+|+||||+|.+|++|+++++++|++
T Consensus 1 ~~~F~~~girG~~~~------~~lt~~~~~~~~~a~~~~~~~~~--------~~~~VvVg~D~R~~s~~~~~~~~~~l~~ 66 (137)
T PF02878_consen 1 RVLFGTSGIRGIINV------GELTPEFAARLAQAFASYLKEKG--------NGSRVVVGRDTRPSSPMLAKALAAGLRA 66 (137)
T ss_dssp -CCBBTTSEEEECTH------TTBSHHHHHHHHHHHHHHHHHTT--------TSSEEEEEE-SSTTHHHHHHHHHHHHHH
T ss_pred CCccCCCCeeEEeCC------CCCCHHHHHHHHHHHHHhhcccC--------CCCeEEEEEcccCCHHHHHHHHHHHHhh
Confidence 468999999999985 26999999999999999999741 2478999999999999999999999999
Q ss_pred CCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhh
Q 023423 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARK 220 (282)
Q Consensus 152 ~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~ 220 (282)
+|++|+++|++|||+++|++. +++++|||||||||||++||||||++++|. +.+++.++|++.+.++
T Consensus 67 ~G~~V~~~g~~~tP~~~~~~~--~~~~~ggi~iTaShnp~~~ngik~~~~~G~~~~~~~~~~I~~~~~~~ 134 (137)
T PF02878_consen 67 NGVDVIDIGLVPTPALSFAIR--QLNADGGIMITASHNPPGYNGIKFFDANGGPISPEEERKIEQIIERE 134 (137)
T ss_dssp TTEEEEEEEEB-HHHHHHHHH--HHTESEEEEE--TTS-TTEEEEEEEETTSSB--HHHHHHHHHHHHHT
T ss_pred cccccccccccCcHHhhhhcc--ccccceeeEEEecCCCCCcceEEEEeCCCCcCCHHHHHHHHHHHHhh
Confidence 999999999999999999998 688999999999999999999999999997 6666778888777654
No 29
>PRK07564 phosphoglucomutase; Validated
Probab=100.00 E-value=2.6e-34 Score=287.39 Aligned_cols=184 Identities=20% Similarity=0.224 Sum_probs=144.1
Q ss_pred ccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 023423 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (282)
Q Consensus 73 ~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~ 152 (282)
.+|+.+||||+++. .+||++++.++|+|||+|+.+. + ...+|+||||+|.+|++|++++++||+++
T Consensus 38 ~~FGT~GiRg~~~~------~~lt~~~v~~i~~a~a~~~~~~-----~---~~~~VvVG~D~R~~S~~~a~a~a~gL~s~ 103 (543)
T PRK07564 38 VKFGTSGHRGSSLQ------PSFNENHILAIFQAICEYRGKQ-----G---ITGPLFVGGDTHALSEPAIQSALEVLAAN 103 (543)
T ss_pred CCCcccccccccCC------CCcCHHHHHHHHHHHHHHHHhc-----C---CCCeEEEEecCCcCCHHHHHHHHHHHHHC
Confidence 46666779999953 4699999999999999999753 1 11369999999999999999999999999
Q ss_pred CCcEEEe---ccCChHHHHHHhhcCCCC-----CCeEEEEeccCCCCCCceEEEeeCCCCCChH-HHHHHHHHHHhh---
Q 023423 153 GCLVFDM---GLATTPACFMSTLLPPFA-----YDASIMMTASHLPYTRNGLKFFTKKGGLTSP-VVEDICGEAARK--- 220 (282)
Q Consensus 153 Gv~V~dl---G~~pTP~l~fav~~~~~~-----a~gGImITASHNP~~~NGiK~~~~~G~l~~~-~i~~i~~~~~~~--- 220 (282)
|++|+++ |++|||+++|+++ +++ ++|||||||||||++||||||++++|....+ ..++|++.+...
T Consensus 104 Gi~V~~~~~~g~~pTP~~~~av~--~~~~~~~~~~gGImITASHNP~e~NGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~ 181 (543)
T PRK07564 104 GVGVVIVGRGGYTPTPAVSHAIL--KYNGRGGGLADGIVITPSHNPPEDGGIKYNPPNGGPADTDVTDAIEARANELLAY 181 (543)
T ss_pred CCEEEEeCCCCcCCchHHHHHHH--HhCCCccccceeEEEecCCCCcccCeEEEECCCCCcCChHHHHHHHHHHHhhhhc
Confidence 9999966 8999999999998 677 9999999999999999999999999984444 455555443111
Q ss_pred ---hhcc-cccc-ccccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 221 ---FANR-LTKV-STVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 221 ---~~~~-~~~~-~~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
.+.+ .+.. ...|. +...|+.+.|+++|.+.++.+. +++++||||+||++|++
T Consensus 182 ~~e~~~~~~~~~~~~~g~--~~~~d~~~~Y~~~l~~~i~~~~-------i~~~~lkIvvD~~~G~~ 238 (543)
T PRK07564 182 GLKGVKRIPLDRALASMT--VEVIDPVADYVEDLENVFDFDA-------IRKAGLRLGVDPLGGAT 238 (543)
T ss_pred ccccccccChhHhccCCc--EEecccHHHHHHHHHHhhChhh-------hhcCCceEEEecCCCCc
Confidence 1111 1110 00122 2345788999999999987543 24468999999999986
No 30
>PLN02307 phosphoglucomutase
Probab=100.00 E-value=4.1e-34 Score=287.53 Aligned_cols=192 Identities=17% Similarity=0.120 Sum_probs=142.0
Q ss_pred cccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 023423 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (282)
Q Consensus 72 ~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s 151 (282)
..+|+.+||||+++ .++|++++.++|+|++.++.+.. .....|+||||+|.+|++|+++++++|++
T Consensus 22 ~~~FGT~GiRG~~~-------~~l~~~~~~~ig~a~~~~~~~~~-------~~~~~VvVG~D~R~~S~~fa~~~a~~L~a 87 (579)
T PLN02307 22 GQKPGTSGLRKKVK-------VFMQENYLANFVQALFNALPAEK-------VKGATLVLGGDGRYFNKEAIQIIIKIAAA 87 (579)
T ss_pred CCCCcCcccccccc-------ccCCHHHHHHHHHHHHHHHHhcC-------CCCCeEEEEeCCCcchHHHHHHHHHHHHH
Confidence 34777777999985 47999999999997765554320 01246999999999999999999999999
Q ss_pred CCCcEEEe---ccCChHHHHHHhhcCCC---CCCeEEEEeccCCC---CCCceEEEeeCCCCC-ChHHHHHHHHHHHhh-
Q 023423 152 AGCLVFDM---GLATTPACFMSTLLPPF---AYDASIMMTASHLP---YTRNGLKFFTKKGGL-TSPVVEDICGEAARK- 220 (282)
Q Consensus 152 ~Gv~V~dl---G~~pTP~l~fav~~~~~---~a~gGImITASHNP---~~~NGiK~~~~~G~l-~~~~i~~i~~~~~~~- 220 (282)
+|++|+++ |++|||+++|+++ ++ ++++|||||||||| ++|||||+++++|.. .++..++|.+.+...
T Consensus 88 ~Gi~V~~~~~~G~~PTP~vsfav~--~~~~~~a~gGImITASHNP~~~~eyNGiK~~~~~G~~~~~~~~~~I~~~i~~~~ 165 (579)
T PLN02307 88 NGVRRVWVGQNGLLSTPAVSAVIR--ERDGSKANGGFILTASHNPGGPEEDFGIKYNYESGQPAPESITDKIYGNTLTIK 165 (579)
T ss_pred CCCEEEEeCCCCccCchHHHHHHH--HhcccCCCeEEEEecCCCCCCCCCCCEEEEECCCCCcCCcHHHHHHHHHHHhhh
Confidence 99999999 7999999999998 78 89999999999999 899999999999984 444455554443221
Q ss_pred ------hhcc-cc-c--ccccc---CCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 221 ------FANR-LT-K--VSTVL---RNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 221 ------~~~~-~~-~--~~~~g---~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
.... .+ . .+..+ .......|..+.|+++|.+.++.+.++. ...+++||||+||+||+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~Yi~~l~~~i~~~~i~~---~~~~~~lkVvvD~~hGag~ 237 (579)
T PLN02307 166 EYKMAEDIPDVDLSAVGVTKFGGPEDFDVEVIDPVEDYVKLMKSIFDFELIKK---LLSRPDFTFCFDAMHGVTG 237 (579)
T ss_pred hhhhcccccccchhhhcccccccccccceEEecCHHHHHHHHHHhhCHHHHhh---hcccCCCeEEEeCCCCccH
Confidence 0000 00 0 00112 2111335788999999999887543210 0114689999999999973
No 31
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=100.00 E-value=1e-33 Score=283.35 Aligned_cols=190 Identities=21% Similarity=0.199 Sum_probs=142.6
Q ss_pred ccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 023423 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (282)
Q Consensus 73 ~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~ 152 (282)
+.|+.+||||+++ ++||++++.++|+|++.++.+.. . ...+|+||||+|.+|++|+++++++|+++
T Consensus 11 ~~Fgt~giRG~~~-------~~l~~~~~~~~~~a~~~~~~~~~----~---~~~~VvVG~D~R~~S~~~a~~~a~~L~~~ 76 (548)
T cd03085 11 QKPGTSGLRKKVK-------VFQQPNYLENFVQSIFNALPPEK----L---KGATLVVGGDGRYYNKEAIQIIIKIAAAN 76 (548)
T ss_pred CCCCcccccEeec-------cccCHHHHHHHHHHHHHHHHhcc----C---CCCeEEEEECCCcChHHHHHHHHHHHHHC
Confidence 5678888999996 47999999999998866654320 0 11369999999999999999999999999
Q ss_pred CCcEEEe---ccCChHHHHHHhhcCCCCCCeEEEEeccCCC---CCCceEEEeeCCCC-CChHHHHHHHHHHHh--h-h-
Q 023423 153 GCLVFDM---GLATTPACFMSTLLPPFAYDASIMMTASHLP---YTRNGLKFFTKKGG-LTSPVVEDICGEAAR--K-F- 221 (282)
Q Consensus 153 Gv~V~dl---G~~pTP~l~fav~~~~~~a~gGImITASHNP---~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~--~-~- 221 (282)
|++|+++ |++|||+++|+++ +++|+||||||||||| ++||||||++++|. +.++..++|++.+.. . .
T Consensus 77 G~~V~~~~~~G~~pTP~l~fav~--~~~a~gGImITASHNP~~~~eyNGiK~~~~~G~~i~~~~~~~I~~~i~~ie~~~~ 154 (548)
T cd03085 77 GVGKVVVGQNGLLSTPAVSAVIR--KRKATGGIILTASHNPGGPEGDFGIKYNTSNGGPAPESVTDKIYEITKKITEYKI 154 (548)
T ss_pred CCeEEEeCCCCccCchHHHHHHH--hcCCCeEEEEecCCCCCCCCcCCcEEEecCCCCcCCcHHHHHHHHHHHhcccccc
Confidence 9999999 8999999999998 7899999999999999 79999999999998 555545555444221 1 0
Q ss_pred --hccccccccccCC-------CCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 222 --ANRLTKVSTVLRN-------PPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 222 --~~~~~~~~~~g~~-------~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
+.+.. ....|.+ .....|+.+.|+++|++.++.+.++.. ..+++||||+||+||+++
T Consensus 155 ~~~~~~~-~~~~g~i~~~~~~~~~~~~d~~~~Yi~~l~~~v~~~~i~~~---~~~~~lkVVvD~~nGag~ 220 (548)
T cd03085 155 ADDPDVD-LSKIGVTKFGGKPFTVEVIDSVEDYVELMKEIFDFDAIKKL---LSRKGFKVRFDAMHGVTG 220 (548)
T ss_pred ccccccC-hhhcCceeecccCCceEEecCHHHHHHHHHhhhCHHHHhhh---cccCCCEEEEeCCcchhH
Confidence 01110 0112221 112357789999999998875432000 013689999999999863
No 32
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=7.8e-34 Score=282.79 Aligned_cols=184 Identities=21% Similarity=0.254 Sum_probs=141.8
Q ss_pred ccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 023423 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (282)
Q Consensus 73 ~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~ 152 (282)
.+|+.+||||+++. .+||++++.++|+|||+|+.+. + ...+|+||||+|..|.++++++++||+++
T Consensus 21 ~~FGT~GiRG~~g~------~~lt~~~v~~i~~a~~~~l~~~-----~---~~~~VvVg~D~R~~S~~~~~~~~~gL~s~ 86 (522)
T cd05801 21 VAFGTSGHRGSSLK------GSFNEAHILAISQAICDYRKSQ-----G---ITGPLFLGKDTHALSEPAFISALEVLAAN 86 (522)
T ss_pred eeEEcccccCccCC------CchhHHHHHHHHHHHHHHHHhh-----C---CCCeEEEEeCCCcCCHHHHHHHHHHHHHC
Confidence 46666679999863 3699999999999999999754 1 01359999999998888888888999999
Q ss_pred CCcEEE---eccCChHHHHHHhhcCCCCCC------eEEEEeccCCCCCCceEEEeeCCCCCChHHHHHHHHHHHhhh--
Q 023423 153 GCLVFD---MGLATTPACFMSTLLPPFAYD------ASIMMTASHLPYTRNGLKFFTKKGGLTSPVVEDICGEAARKF-- 221 (282)
Q Consensus 153 Gv~V~d---lG~~pTP~l~fav~~~~~~a~------gGImITASHNP~~~NGiK~~~~~G~l~~~~i~~i~~~~~~~~-- 221 (282)
|++|++ +|++|||+++|+++ +++++ |||||||||||++||||||++++|....+++++.++......
T Consensus 87 Gi~V~~~~~~g~~pTP~~~~av~--~~~~~~~~~~~gGI~ITASHNP~~~NGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~ 164 (522)
T cd05801 87 GVEVIIQQNDGYTPTPVISHAIL--TYNRGRTEGLADGIVITPSHNPPEDGGFKYNPPHGGPADTDITRWIEKRANALLA 164 (522)
T ss_pred CCEEEEeCCCCCCCchHHHHHHH--HhccccccCCCcEEEEECCCCCcccCEEEEECCCCCCCCHHHHHHHHHhhhhhhh
Confidence 999995 79999999999998 67766 599999999999999999999999966666544444431111
Q ss_pred -----hcc-ccccc-cccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 222 -----ANR-LTKVS-TVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 222 -----~~~-~~~~~-~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
+.+ .+... ..+. +...++.+.|+++|.+.++.+. ++.+++|||+||+||++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Y~~~l~~~v~~~~-------~~~~~lkVvvd~~~G~~ 222 (522)
T cd05801 165 NGLKGVKRIPLEAALASGY--THRHDFVTPYVADLGNVIDMDA-------IRKSGLRLGVDPLGGAS 222 (522)
T ss_pred cccccccccchhhhhccCc--eecCCcHHHHHHHHHHhhChhh-------hhcCCceEEEeCCCCcc
Confidence 111 11100 1232 2345789999999999987543 24468999999999986
No 33
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=7.1e-32 Score=264.32 Aligned_cols=194 Identities=22% Similarity=0.325 Sum_probs=153.2
Q ss_pred ccc-ccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHH
Q 023423 72 RRL-QNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLA 150 (282)
Q Consensus 72 ~~L-f~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~ 150 (282)
.++ |+.+|+||.+..| ...+|+..+.++|++|+.++.+++.+ ++..||||||.|.+|..|+++++.+|.
T Consensus 58 ~Ri~fgt~GlRg~m~ag----f~~mnel~~iq~~qg~a~yl~~~~~~------~~~giviG~D~R~~S~~fA~l~a~vf~ 127 (607)
T KOG1220|consen 58 TRIKFGTAGLRGEMRAG----FSRMNELTAIQFGQGLAAYLKNQFPS------KNLGIVIGHDGRYNSKRFAELVAAVFL 127 (607)
T ss_pred cceeeeccccccccccC----chhhhHHHHHHHHHHHHHHHHHhCCc------ccceEEEecCCccchHHHHHHHHHHHH
Confidence 356 5555699998875 35799999999999999999987521 235899999999999999999999999
Q ss_pred HCCCcEEEec-cCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhccc--c
Q 023423 151 RAGCLVFDMG-LATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFANRL--T 226 (282)
Q Consensus 151 s~Gv~V~dlG-~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~~~--~ 226 (282)
.+|+.|++++ ++|||++.|++. .++|++||||||||||++|||+|+|++||+ +.++.-++|.+.+.....++. |
T Consensus 128 ~~g~~v~lf~~~v~TP~vpfav~--~l~~dAgIMiTASHnPk~dNGyKvYwsNG~qii~PhD~~I~~~~~~nl~p~~s~w 205 (607)
T KOG1220|consen 128 LNGFKVYLFSELVPTPFVPFAVL--TLGADAGIMITASHNPKEDNGYKVYWSNGAQIISPHDEKISDSIEANLEPRLSSW 205 (607)
T ss_pred hCCceEEEeccccCCCcchhHHH--HhccCceEEEeccCCccccCCEEEEecCCccccCchhHHHHHHHHhccCcccchh
Confidence 9999999997 999999999998 799999999999999999999999999997 888888889888876554443 4
Q ss_pred ccccccCCCCcccchHH----HHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 227 KVSTVLRNPPTRVDFMS----TYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 227 ~~~~~g~~~~~~~d~~~----~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
..+...+. ....|+.. .|++.+++.+. |......++.++++|+++++||.|
T Consensus 206 d~slv~s~-~l~~d~~~~~~~~~~e~~k~~l~----~~~~e~n~~s~~~fVyta~hGvG~ 260 (607)
T KOG1220|consen 206 DDSLVKSH-PLLHDILAVIIPPYFEVYKELLP----CFHREANPLSGLKFVYTAGHGVGG 260 (607)
T ss_pred hhhHHhcc-hhhcCchhccchHHHHHHHhcCc----cHhhhhccCCCceEEEecCCCccH
Confidence 32222222 12344443 45555555443 222233578899999999999975
No 34
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1e-22 Score=195.05 Aligned_cols=187 Identities=19% Similarity=0.206 Sum_probs=150.6
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 023423 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (282)
Q Consensus 74 Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~G 153 (282)
-|+.+|.||.+.. -.+++..+..+.||+..++.++. ...+++||+|+|..|+..-+.+++.|+++|
T Consensus 17 k~GTSG~R~~~~~------~~fne~~i~a~~Qai~d~~~~~~--------~~~~L~vG~D~~~~se~a~~~~lev~aANg 82 (524)
T COG0033 17 KFGTSGHRGSALV------FTFNENHILAFIQAIADYRAEGG--------IGGPLVVGGDTHALSEPAIQSALEVLAANG 82 (524)
T ss_pred CCCCccccCcccc------CccCHHHHHHHHHHHHHHHhccC--------CCCceEECCCcccccHHHHHHHHHHHHhcC
Confidence 3566679999976 37899999999999999998762 236899999999999999999999999999
Q ss_pred CcEEEe---ccCChHHHHHHhhcC--CCCC-CeEEEEeccCCCCCCceEEEeeCCCCCChHHHHHHHHHHHh-hhhc---
Q 023423 154 CLVFDM---GLATTPACFMSTLLP--PFAY-DASIMMTASHLPYTRNGLKFFTKKGGLTSPVVEDICGEAAR-KFAN--- 223 (282)
Q Consensus 154 v~V~dl---G~~pTP~l~fav~~~--~~~a-~gGImITASHNP~~~NGiK~~~~~G~l~~~~i~~i~~~~~~-~~~~--- 223 (282)
++++.. |++|||+++++++.. +.++ .+||+||+||||+++.|||...++|++.++++++.++.... .+..
T Consensus 83 v~~iv~~~~g~~~TPAaSh~I~t~n~k~k~~~~GIvlT~SHNPP~D~GIKYN~~nGGPA~~~~T~aI~~ra~~~~k~~~~ 162 (524)
T COG0033 83 VEVIVQGQGGFTPTPAASHAILTHNGKYKALADGIVLTPSHNPPEDGGIKYNPPNGGPAPEKVTDAIEARANDLYKIGLL 162 (524)
T ss_pred ceEEEecCCCccCchHHHHHHHhhcccccccCCeEEEcCCCCCcccCCcccCCCCCCCCChHHHHHHHHHHHHHHHhhhc
Confidence 999987 799999999998732 2344 55699999999999999999999999999988866655422 2211
Q ss_pred ---cccccccccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 224 ---RLTKVSTVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 224 ---~~~~~~~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
+.......+..++...|+..+|++.|.+++|+++| +..++|+++|+++|++
T Consensus 163 ~v~r~~~~~~~~~~~v~~~D~v~~Yv~~l~~i~D~daI-------r~~~~~l~~D~l~g~t 216 (524)
T COG0033 163 DVKRIGLDQAYGSLTVKIIDPVKDYVELLEEIFDFDAI-------RKAGLRLGFDPLGGVT 216 (524)
T ss_pred CccccchhhhcCcceeeeecchHHHHHHHHHhhcHHHH-------HHHHhhcccccccCcc
Confidence 11101123343356789999999999999999885 5567889999999986
No 35
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.83 E-value=1.6e-20 Score=178.43 Aligned_cols=123 Identities=27% Similarity=0.324 Sum_probs=95.1
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 023423 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (282)
Q Consensus 74 Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~G 153 (282)
+|+.+||||++| ++|||+++.++|.|||+ +
T Consensus 1 ~fg~~gi~G~~n-------~~itpe~~~~lg~a~g~------------------~------------------------- 30 (355)
T cd03084 1 IFGTSGVRGVVG-------DDITPETAVALGQAIGS------------------T------------------------- 30 (355)
T ss_pred CCcccCcccccC-------CcCCHHHHHHHHHHHhc------------------c-------------------------
Confidence 688999999998 49999999999999952 1
Q ss_pred CcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhcccccccccc
Q 023423 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFANRLTKVSTVL 232 (282)
Q Consensus 154 v~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~~~~~~~~~g 232 (282)
|||||||||||++||||||++++|. +.+.++++|++.+.++.+.+... ...+
T Consensus 31 --------------------------gGI~ITaSHnp~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~-~~~~ 83 (355)
T cd03084 31 --------------------------GGIMITASHNPPEDNGIKFVDPDGEPIASEEEKAIEDLAEKEDEPSAVA-YELG 83 (355)
T ss_pred --------------------------eeEEEEeCCCChhHCcEEEecCCCCcCCHHHHHHHHHHHhccccccccc-ccCC
Confidence 8999999999999999999999998 55666666666555443332110 0123
Q ss_pred CCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 233 RNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 233 ~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
.. ....++.+.|+++|.+.++.+. +.++++||||||+||++
T Consensus 84 ~~-~~~~~~~~~Y~~~l~~~i~~~~-------i~~~~~kvvvD~~~G~~ 124 (355)
T cd03084 84 GS-VKAVDILQRYFEALKKLFDVAA-------LSNKKFKVVVDSVNGVG 124 (355)
T ss_pred Ce-EEEcCCHHHHHHHHHHhcChhh-------hccCCCEEEEECCCchH
Confidence 32 2456889999999999998643 34578999999999986
No 36
>KOG0625 consensus Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=5.5e-18 Score=161.49 Aligned_cols=189 Identities=20% Similarity=0.161 Sum_probs=137.9
Q ss_pred cccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCc
Q 023423 76 NGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCL 155 (282)
Q Consensus 76 ~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~ 155 (282)
+.+|+|.++.+ +. ....++.+++.+-.+ +.. .+.+..++|||-|.|..+....+.+++.-+++|+.
T Consensus 19 GTSGLRKkvkv--F~-qpnY~eNfvQa~~~a----~~~-------~~~kgatLVVGGDGRyy~~~a~~~I~~iaAaNGv~ 84 (558)
T KOG0625|consen 19 GTSGLRKKVKV--FK-QPNYTENFVQAIMNA----LPG-------EKSKGATLVVGGDGRYYNKEAIQIIAKIAAANGVG 84 (558)
T ss_pred Cccchhhccee--ec-CCchHHHHHHHHHhc----ccc-------ccccCceEEEcCCCcchhHHHHHHHHHHHhhcCcc
Confidence 45679988763 11 234555555444433 321 11235799999999999999999999999999999
Q ss_pred EEEe---ccCChHHHHHHhhcCCCCCCeEEEEeccCCC---CCCceEEEeeCCCCCChHHHHHHHHHHHh---hhh----
Q 023423 156 VFDM---GLATTPACFMSTLLPPFAYDASIMMTASHLP---YTRNGLKFFTKKGGLTSPVVEDICGEAAR---KFA---- 222 (282)
Q Consensus 156 V~dl---G~~pTP~l~fav~~~~~~a~gGImITASHNP---~~~NGiK~~~~~G~l~~~~i~~i~~~~~~---~~~---- 222 (282)
-+.+ |+.+||+++.-++. ..++.|||++|||||| .++-||||..+||++.++.+...+..... ++.
T Consensus 85 rlivGqnGiLSTPAvS~iIRk-~~ka~GGiILTASHnPGGP~~DfGIKfN~~NGgPAPesvTdkIy~itk~i~eyki~~~ 163 (558)
T KOG0625|consen 85 RLIVGQNGILSTPAVSCIIRK-YIKAGGGIILTASHNPGGPEGDFGIKFNLENGGPAPESVTDKIYEITKTISEYKIAKD 163 (558)
T ss_pred eEEeccCCcccchHHHHHHHh-hcccCceEEEEeccCCCCCCCccceEEecCCCCCChHHHHHHHHHhhhhhhhceeecC
Confidence 8888 79999999988762 2278899999999997 56789999999999999987765544421 111
Q ss_pred cc-cc----ccccccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 223 NR-LT----KVSTVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 223 ~~-~~----~~~~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
.. .. .++.-|.+.++..|..++|++.|++++|++.++.+ ....++||+.+|+|+||+
T Consensus 164 ~~iDls~vG~~~~~gpf~VeviDpv~~Yv~lmk~IFDF~~ik~l--ls~~~~~k~~~DamhGvt 225 (558)
T KOG0625|consen 164 PKIDLSTVGKTSFDGPFTVEVIDPVKDYVNLMKEIFDFDLIKSL--LSGPKKLKFRFDAMHGVT 225 (558)
T ss_pred cccchhhhccccccCCeeEEEeccHHHHHHHHHHHhCHHHHHHH--hcCCCCceEEEeeccccc
Confidence 00 00 01112444456789999999999999999988663 122378999999999986
No 37
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.38 E-value=1.9e-12 Score=129.43 Aligned_cols=54 Identities=35% Similarity=0.484 Sum_probs=50.3
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhhcCCCCCCe
Q 023423 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDA 180 (282)
Q Consensus 125 ~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~~~~~~a~g 180 (282)
..+|+||||+|.+|++|++++++||.+.|++|+|+|.+|||+++|++. .+++.|
T Consensus 102 ~~~V~vg~D~R~ss~~l~~a~~~gl~~~G~~V~d~g~~~TP~~~~~v~--~~~~~g 155 (513)
T cd03086 102 PANVFVGRDTRPSGPALLQALLDGLKALGGNVIDYGLVTTPQLHYLVR--AANTEG 155 (513)
T ss_pred CCEEEEEeCCChhHHHHHHHHHHHHHHCCCeEEEccCcCcHHHHHHHH--hcCCCC
Confidence 468999999999999999999999999999999999999999999998 666655
No 38
>PLN02895 phosphoacetylglucosamine mutase
Probab=99.11 E-value=3.2e-10 Score=114.25 Aligned_cols=48 Identities=38% Similarity=0.566 Sum_probs=46.4
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhh
Q 023423 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTL 172 (282)
Q Consensus 125 ~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~ 172 (282)
..+|+||||+|.||+.|+++++.||.+.|++|+|+|++|||+++|+++
T Consensus 127 ~~~V~vG~DtR~Ss~~l~~a~~~gl~~~G~~v~d~G~~tTP~l~~~v~ 174 (562)
T PLN02895 127 PAEVLLGRDTRPSGPALLAAALKGVRAIGARAVDMGILTTPQLHWMVR 174 (562)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHHCCCCEEEeCcCCcHHHHHHHH
Confidence 468999999999999999999999999999999999999999999997
No 39
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=99.05 E-value=6.9e-10 Score=112.41 Aligned_cols=48 Identities=35% Similarity=0.537 Sum_probs=46.1
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHH-HCCCcEEEeccCChHHHHHHhh
Q 023423 125 DVKVSLGKDPRVSGPSLSVAVFAGLA-RAGCLVFDMGLATTPACFMSTL 172 (282)
Q Consensus 125 ~~~VvVG~D~R~sS~~la~ala~gL~-s~Gv~V~dlG~~pTP~l~fav~ 172 (282)
...|+||||+|.||++|++++++||+ +.|++|+|+|++|||+++|+++
T Consensus 152 ~~~V~vGrDtR~Ss~~L~~al~~gl~~~~G~~v~d~G~~tTP~l~y~v~ 200 (585)
T PTZ00302 152 KAKVHVGRDTRPSSPELVSALLRGLKLLIGSNVRNFGIVTTPQLHFLVA 200 (585)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHhcCCcEEEeCCCCcHHHHHHHH
Confidence 35799999999999999999999999 9999999999999999999987
No 40
>PLN02895 phosphoacetylglucosamine mutase
Probab=98.76 E-value=6.4e-08 Score=97.73 Aligned_cols=63 Identities=24% Similarity=0.222 Sum_probs=52.1
Q ss_pred HHHHHHHHHHCCCcEEEe-ccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChHHHHHHH
Q 023423 142 SVAVFAGLARAGCLVFDM-GLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSPVVEDIC 214 (282)
Q Consensus 142 a~ala~gL~s~Gv~V~dl-G~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~~i~~i~ 214 (282)
.+..+..|.+.|+.|..+ .+.|| . +++.+||||||||||++|||+|+++.+|.....+.++..
T Consensus 31 FR~~a~~l~~~~~r~~~~~~~r~~-------~---~~~~~gVmITaSHnp~~~nG~K~~~~~G~~~~~~~e~~a 94 (562)
T PLN02895 31 FRTDASLLESTVFRVGILAALRSL-------K---TGAATGLMITASHNPVSDNGVKIVDPSGGMLPQAWEPFA 94 (562)
T ss_pred hHHHHHHHHhcCeEEEEeCCCCcc-------c---cCCCcEEEEeCCCCCcccCcEEEECCCCCcCCHHHHHHH
Confidence 567788999999999988 67666 1 368999999999999999999999999996665534433
No 41
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=98.48 E-value=2.2e-07 Score=94.36 Aligned_cols=37 Identities=32% Similarity=0.468 Sum_probs=30.8
Q ss_pred CCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHH
Q 023423 178 YDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDIC 214 (282)
Q Consensus 178 a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~ 214 (282)
+.+||||||||||++|||+|+++++|+ +.++....+.
T Consensus 75 ~~~GImiTASHNp~~~NG~K~~~~~G~~l~~~~~~~i~ 112 (585)
T PTZ00302 75 KSVGVMITASHNPIQDNGVKIIDPDGGMLEESWEKICT 112 (585)
T ss_pred cceeEEEeCCCCCcccCCEEEECCCCCcCCCcHHHHHH
Confidence 889999999999999999999999998 5554433333
No 42
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=98.47 E-value=1.5e-07 Score=94.36 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=29.8
Q ss_pred CeEEEEeccCCCCCCceEEEeeCCCCCChHH-HHHH
Q 023423 179 DASIMMTASHLPYTRNGLKFFTKKGGLTSPV-VEDI 213 (282)
Q Consensus 179 ~gGImITASHNP~~~NGiK~~~~~G~l~~~~-i~~i 213 (282)
.+||||||||||++|||||++.++|.+..++ ++++
T Consensus 36 ~~gimITaSHNP~~~NGiK~~~~~g~~~~~~~~~~~ 71 (513)
T cd03086 36 TIGVMITASHNPVEDNGVKIVDPDGEMLEESWEPYA 71 (513)
T ss_pred ceEEEECCCcCCcccCeEEEEcCCCCCCCHHHHHHH
Confidence 6899999999999999999999999866555 3344
No 43
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.0002 Score=70.92 Aligned_cols=49 Identities=33% Similarity=0.361 Sum_probs=46.2
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhhc
Q 023423 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLL 173 (282)
Q Consensus 125 ~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~~ 173 (282)
..+|++|||+|.+|+.+.+++..++....+.+.|+|+++||++.|.++.
T Consensus 124 ~~~v~~G~DtR~s~~~L~~~~~~~~~~l~a~~~d~GvvtTPqLHy~v~~ 172 (539)
T KOG2537|consen 124 SAHVVVGRDTRPSSPRLLNAVRDGVGALFAQVDDYGVVTTPQLHYMVRA 172 (539)
T ss_pred cceEEEecCCCCccHHHHHHHHHHHHhhheEecceEEEcchhhhhhhhh
Confidence 4689999999999999999999999999999999999999999999873
No 44
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=97.05 E-value=0.00028 Score=69.91 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=27.2
Q ss_pred CCCCeEEEEeccCCCCCCceEEEeeCCCCCC
Q 023423 176 FAYDASIMMTASHLPYTRNGLKFFTKKGGLT 206 (282)
Q Consensus 176 ~~a~gGImITASHNP~~~NGiK~~~~~G~l~ 206 (282)
.+..-|+||||||||.++||+|+.++.|..+
T Consensus 57 ~gs~IGvMiTASHNp~~dNGvKivd~~g~ml 87 (539)
T KOG2537|consen 57 GGSTIGVMITASHNPVEDNGVKIVDPSGEML 87 (539)
T ss_pred cCCeeEEEEEeccCchhhcCccccCCccchh
Confidence 3556899999999999999999999999733
No 45
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=87.10 E-value=2.6 Score=35.55 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=43.4
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCC-----hHHHHHHhh--cCCCCCCeEEEEecc
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT-----TPACFMSTL--LPPFAYDASIMMTAS 187 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~p-----TP~l~fav~--~~~~~a~gGImITAS 187 (282)
+|+||.|. ++-.+++.+.+-|.+.|++|+|+|... -|.+.+.+. ...-.++-||+|..+
T Consensus 1 KI~igsDh--~g~~lK~~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~d~GIliCgt 66 (140)
T PF02502_consen 1 KIAIGSDH--AGFELKEAIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVASGEADRGILICGT 66 (140)
T ss_dssp EEEEEE-G--GGHHHHHHHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred CEEEEeCH--HHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHcccCCeEEEEcCC
Confidence 47888885 688999999999999999999998766 455544332 113457788887763
No 46
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=86.88 E-value=2.8 Score=36.58 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=41.9
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccC-----ChHHHHHHhh--cCCCCCCeEEEEec
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA-----TTPACFMSTL--LPPFAYDASIMMTA 186 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~-----pTP~l~fav~--~~~~~a~gGImITA 186 (282)
+|+||.|. .+-.|++.+.+-|.+.|++|.|+|.- .-|-+...+. ...-.++-||+|-.
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCG 66 (171)
T TIGR01119 2 KIAIGCDH--IVTDVKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICG 66 (171)
T ss_pred EEEEEeCC--chHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 48899985 68899999999999999999999862 2344333222 11345677888766
No 47
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=86.39 E-value=3.5 Score=34.88 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=43.3
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEecc---CChHHHHHHhh--cCCCCCCeEEEEecc
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL---ATTPACFMSTL--LPPFAYDASIMMTAS 187 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~---~pTP~l~fav~--~~~~~a~gGImITAS 187 (282)
+|+||.|. .+-.+++.+.+-|.+.|++|+|+|. +--|-+.+.+. .....++-||+|-++
T Consensus 2 kI~IgsDh--~G~~lK~~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~e~~~GIliCGt 65 (141)
T TIGR01118 2 AIIIGSDL--AGKRLKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQKDEQNLGIVIDAY 65 (141)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 48899985 5789999999999999999999986 33355544332 013457778887664
No 48
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=86.13 E-value=3.7 Score=34.80 Aligned_cols=59 Identities=17% Similarity=0.105 Sum_probs=43.2
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEecc---CChHHHHHHhhc--CCCCCCeEEEEecc
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL---ATTPACFMSTLL--PPFAYDASIMMTAS 187 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~---~pTP~l~fav~~--~~~~a~gGImITAS 187 (282)
+|+||.|. .+-.+++.+.+-|.+.|++|.|+|. +.-|-+.+.+.. ..-.++-||.|-++
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~~~~~GIliCGT 65 (142)
T PRK08621 2 AIIIGADK--AGFELKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNKSEDNLGIVIDAY 65 (142)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 48899885 6789999999999999999999986 344555544331 12346677777663
No 49
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=86.09 E-value=4.1 Score=34.74 Aligned_cols=59 Identities=22% Similarity=0.337 Sum_probs=42.1
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccC------ChHHHHHHhh--cCCCCCCeEEEEecc
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA------TTPACFMSTL--LPPFAYDASIMMTAS 187 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~------pTP~l~fav~--~~~~~a~gGImITAS 187 (282)
+|+||.|. .+-.|++.+.+-|.+.|++|+|+|.- .-|-+.+.+. ...-.++-||.|.++
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGt 68 (148)
T PRK05571 2 KIAIGSDH--AGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGT 68 (148)
T ss_pred EEEEEeCC--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 58899985 58899999999999999999999852 2333333322 112456778887763
No 50
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=85.78 E-value=4 Score=34.55 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=43.0
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCCh--HHHHHHhh--cCCCCCCeEEEEecc
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT--PACFMSTL--LPPFAYDASIMMTAS 187 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pT--P~l~fav~--~~~~~a~gGImITAS 187 (282)
+|+||.|. .+-.+++.+.+-|.+.|++|+|+|.-++ |-+...+. ..+-.++-||+|-++
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~dypd~a~~va~~V~~~e~~~GIliCGt 64 (141)
T PRK12613 2 AIILGADA--HGNALKELIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAY 64 (141)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCChHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 48899885 6889999999999999999999997333 54443332 113456778877764
No 51
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=85.45 E-value=3.5 Score=34.94 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=41.4
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEecc-----CChHHHHHHhh--cCCCCCCeEEEEec
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-----ATTPACFMSTL--LPPFAYDASIMMTA 186 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~-----~pTP~l~fav~--~~~~~a~gGImITA 186 (282)
+|+||.|. .+-.+++.+.+-|.+.|++|+|+|. +.-|-+...+. .....++-||+|-+
T Consensus 1 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCG 65 (143)
T TIGR01120 1 KIAIGSDH--AGFILKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICG 65 (143)
T ss_pred CEEEEeCc--chHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEEcC
Confidence 37888885 6889999999999999999999986 33444443332 11234677777765
No 52
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=85.22 E-value=4 Score=34.90 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=43.2
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHH--CCCcEEEecc-----CChHHHHHHhh--cCCCCCCeEEEEecc
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLAR--AGCLVFDMGL-----ATTPACFMSTL--LPPFAYDASIMMTAS 187 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s--~Gv~V~dlG~-----~pTP~l~fav~--~~~~~a~gGImITAS 187 (282)
-+|+||.|. .+-.|++.+.+-|.+ .|++|+|+|. +.-|-+.+.+. .....++-||+|.++
T Consensus 3 mkI~igsDh--aG~~lK~~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~~~GIliCGt 71 (151)
T PTZ00215 3 KKVAIGSDH--AGFDLKNEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILVCGS 71 (151)
T ss_pred cEEEEEeCC--chHHHHHHHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 469999996 578999999999999 9999999985 33444443332 112346667877663
No 53
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=82.26 E-value=6.5 Score=33.48 Aligned_cols=59 Identities=27% Similarity=0.353 Sum_probs=43.3
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEecc------CChHHHHHHhh--cCCCCCCeEEEEecc
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL------ATTPACFMSTL--LPPFAYDASIMMTAS 187 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~------~pTP~l~fav~--~~~~~a~gGImITAS 187 (282)
+|+||.|. .+-.+++.+..-|.+.|++|.|+|. ..-|-+...+. .....++-||+|.++
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGt 68 (148)
T TIGR02133 2 RVVLGHDH--AGFEYKEALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGS 68 (148)
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCC
Confidence 48888885 6789999999999999999999985 22455544332 113457788888774
No 54
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=82.25 E-value=5.7 Score=34.71 Aligned_cols=58 Identities=21% Similarity=0.171 Sum_probs=42.6
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEecc-----CChHHHHHHhh--cCCCCCCeEEEEec
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-----ATTPACFMSTL--LPPFAYDASIMMTA 186 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~-----~pTP~l~fav~--~~~~~a~gGImITA 186 (282)
+|+||.|. .+-.+++.+.+-|.+.|++|+|+|. +.-|-+.+.+. ...-.++-||+|-+
T Consensus 2 kI~IgsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~~g~~d~GIliCG 66 (171)
T PRK08622 2 KIAIGCDH--IVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICG 66 (171)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCcEEEEEcC
Confidence 48899886 5789999999999999999999986 23455444332 11345678888766
No 55
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=81.26 E-value=5.9 Score=33.59 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=40.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHHHCCCcEEEecc-----CChHHHHHHhh--cCCCCCCeEEEEecc
Q 023423 128 VSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-----ATTPACFMSTL--LPPFAYDASIMMTAS 187 (282)
Q Consensus 128 VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~-----~pTP~l~fav~--~~~~~a~gGImITAS 187 (282)
|+||.|. .+-.+++.+.+-|.+.|++|.|+|. +.-|-+.+.+. ...-.++-||+|-+|
T Consensus 1 I~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGt 65 (144)
T TIGR00689 1 IAIGSDH--AGLELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILICGT 65 (144)
T ss_pred CEEeeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 4577774 5789999999999999999999986 23344433322 112456778887663
No 56
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=80.68 E-value=7.1 Score=34.11 Aligned_cols=58 Identities=21% Similarity=0.129 Sum_probs=41.9
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEecc-----CChHHHHHHhh--cCCCCCCeEEEEec
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-----ATTPACFMSTL--LPPFAYDASIMMTA 186 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~-----~pTP~l~fav~--~~~~~a~gGImITA 186 (282)
+|+||.|. .+-.|++.+.+-|.+.|++|+|+|. +--|-+.+.+. ...-.++-||+|-+
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCG 66 (171)
T PRK12615 2 KIAIGCDH--IVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICG 66 (171)
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 48899985 5789999999999999999999986 23444444332 11245677777765
No 57
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=77.00 E-value=9.6 Score=32.65 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=40.4
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccC-Ch-----HHHHHHhh--cCCCCCCeEEEEec
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA-TT-----PACFMSTL--LPPFAYDASIMMTA 186 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~-pT-----P~l~fav~--~~~~~a~gGImITA 186 (282)
+|+||.|. ++..+++.+..-|.+.|++|+|+|.. ++ |-+...+. ...-+++-||.|-+
T Consensus 2 kIaig~Dh--ag~~lK~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCG 67 (151)
T COG0698 2 KIAIGSDH--AGYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICG 67 (151)
T ss_pred cEEEEcCc--ccHHHHHHHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEec
Confidence 48889885 68899999999999999999999644 33 22222111 00225778888766
No 58
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=67.35 E-value=24 Score=34.69 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec-CCCChHHHHHHHHHHHHHCCCcEEEeccCCh--HHHHHHhhcCC
Q 023423 99 AVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD-PRVSGPSLSVAVFAGLARAGCLVFDMGLATT--PACFMSTLLPP 175 (282)
Q Consensus 99 ~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D-~R~sS~~la~ala~gL~s~Gv~V~dlG~~pT--P~l~fav~~~~ 175 (282)
...++..+|-.|..... . .+|+|-|| ...+.+.+++++++||+..|++|..+-+... --+.= .
T Consensus 229 ~~~~i~~~Y~~W~~~~~--------~-~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~-----~ 294 (388)
T COG0426 229 NPKEIVEAYRDWAEGQP--------K-GKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVE-----E 294 (388)
T ss_pred CHHHHHHHHHHHHccCC--------c-ceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHH-----H
Confidence 45677788989986431 1 26888888 6678899999999999999999876644433 22221 2
Q ss_pred CCCCeEEEEecc
Q 023423 176 FAYDASIMMTAS 187 (282)
Q Consensus 176 ~~a~gGImITAS 187 (282)
.....|++|-.+
T Consensus 295 i~~a~~~vvGsP 306 (388)
T COG0426 295 ILDAKGLVVGSP 306 (388)
T ss_pred HhhcceEEEecC
Confidence 223456776653
No 59
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=60.84 E-value=18 Score=30.01 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=33.3
Q ss_pred EEecCCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEec
Q 023423 130 LGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTA 186 (282)
Q Consensus 130 VG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITA 186 (282)
|+-|.+--+. +.++..|.++|++|+|+|..-+|.-...... +.+++ -|.+++
T Consensus 7 v~gD~HdiGk---niv~~~L~~~GfeVidLG~~v~~e~~v~aa~-~~~ad-iVglS~ 58 (128)
T cd02072 7 IGSDCHAVGN---KILDHAFTEAGFNVVNLGVLSPQEEFIDAAI-ETDAD-AILVSS 58 (128)
T ss_pred eCCchhHHHH---HHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCC-EEEEec
Confidence 4556665554 5667789999999999998666665544432 34443 344444
No 60
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=57.14 E-value=23 Score=29.62 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=34.3
Q ss_pred EEecCCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEec
Q 023423 130 LGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTA 186 (282)
Q Consensus 130 VG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITA 186 (282)
|+-|.+--+. ..+...|.++|++|+|+|..-+|.-...... +.+++ .|.+++
T Consensus 9 v~~D~HdiGk---~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~-~~~ad-iVglS~ 60 (134)
T TIGR01501 9 IGSDCHAVGN---KILDHAFTNAGFNVVNLGVLSPQEEFIKAAI-ETKAD-AILVSS 60 (134)
T ss_pred ecCChhhHhH---HHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCC-EEEEec
Confidence 4667776665 5566788999999999998777766544432 34444 344443
No 61
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=57.12 E-value=58 Score=30.02 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=63.5
Q ss_pred cccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecC
Q 023423 55 VTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP 134 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~ 134 (282)
|+...+..++.+.+.++-.-.-..|+.|++-.|..|+..-||.+.-.++.....+.... ...|++|--.
T Consensus 8 TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~-----------~~~vi~gv~~ 76 (285)
T TIGR00674 8 TPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG-----------RVPVIAGTGS 76 (285)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC-----------CCeEEEeCCC
Confidence 33344556777777776444446889999888888988899999999988777766431 2457777422
Q ss_pred CCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 135 RVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 135 R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.+-.-+-.+++-..+.|++.+.+
T Consensus 77 --~s~~~~i~~a~~a~~~Gad~v~v 99 (285)
T TIGR00674 77 --NATEEAISLTKFAEDVGADGFLV 99 (285)
T ss_pred --ccHHHHHHHHHHHHHcCCCEEEE
Confidence 23333555567778999997766
No 62
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=53.98 E-value=69 Score=27.82 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=46.0
Q ss_pred CCChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChHHHHHHH
Q 023423 135 RVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSPVVEDIC 214 (282)
Q Consensus 135 R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~~i~~i~ 214 (282)
|.++..|...+++-....|..|+.+|-.|.=+-..+.. +. ..|.|+++...+|.+.+++.++++
T Consensus 30 Rv~G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~---l~-------------~~yP~l~i~g~~g~f~~~~~~~i~ 93 (177)
T TIGR00696 30 RVAGPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVK---LI-------------KEYPKLKIVGAFGPLEPEERKAAL 93 (177)
T ss_pred ccChHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHH---HH-------------HHCCCCEEEEECCCCChHHHHHHH
Confidence 78899999999999999999999998777644433322 11 133444444444555556666677
Q ss_pred HHHHh
Q 023423 215 GEAAR 219 (282)
Q Consensus 215 ~~~~~ 219 (282)
+.+.+
T Consensus 94 ~~I~~ 98 (177)
T TIGR00696 94 AKIAR 98 (177)
T ss_pred HHHHH
Confidence 66654
No 63
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=53.56 E-value=61 Score=30.10 Aligned_cols=91 Identities=15% Similarity=0.096 Sum_probs=66.8
Q ss_pred cccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecC
Q 023423 55 VTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP 134 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~ 134 (282)
|+-+.+..++.+.+.++-...-..|+.|++--|..|+..-||.+.-.++.+...+.... ...|++|--
T Consensus 15 TPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g-----------~~pvi~gv~- 82 (296)
T TIGR03249 15 TPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKG-----------KVPVYTGVG- 82 (296)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCC-----------CCcEEEecC-
Confidence 44456667788888887665567889999888888998999999999988887766431 246777763
Q ss_pred CCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 135 RVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 135 R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
. +-.-+-.+++-..+.|++.+.+
T Consensus 83 ~--~t~~ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 83 G--NTSDAIEIARLAEKAGADGYLL 105 (296)
T ss_pred c--cHHHHHHHHHHHHHhCCCEEEE
Confidence 2 2444445677789999998766
No 64
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=52.55 E-value=30 Score=29.39 Aligned_cols=43 Identities=30% Similarity=0.403 Sum_probs=30.8
Q ss_pred CeEEE---EecCCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHh
Q 023423 126 VKVSL---GKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMST 171 (282)
Q Consensus 126 ~~VvV---G~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav 171 (282)
.+|+| |-|.+.-+ ++.+++.|++.|++|++.|...||.=....
T Consensus 13 prvlvak~GlDgHd~g---akvia~~l~d~GfeVi~~g~~~tp~e~v~a 58 (143)
T COG2185 13 PRVLVAKLGLDGHDRG---AKVIARALADAGFEVINLGLFQTPEEAVRA 58 (143)
T ss_pred ceEEEeccCccccccc---hHHHHHHHHhCCceEEecCCcCCHHHHHHH
Confidence 56665 44555444 345678899999999999999999655433
No 65
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=52.39 E-value=33 Score=25.16 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=31.2
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.+|++..|.-..+...++.+.+-|...|++|.-+
T Consensus 44 ~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 44 KEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 5799999999999999999999999999998743
No 66
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=50.80 E-value=88 Score=25.92 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=33.7
Q ss_pred CeEEEE---ecCCCChHHHHHHHHHHHHHCCCcEEEecc-CChHHHHHHhhcCCCCCCeEEEEec
Q 023423 126 VKVSLG---KDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMMTA 186 (282)
Q Consensus 126 ~~VvVG---~D~R~sS~~la~ala~gL~s~Gv~V~dlG~-~pTP~l~fav~~~~~~a~gGImITA 186 (282)
.+|++| -|.+.-+.. .++..|.+.|++|+++|. +|..-+--++. +.+++ .|.+++
T Consensus 4 ~~vl~~~~~gD~H~lG~~---iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~--~~~~d-~V~lS~ 62 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNK---ILDRALTEAGFEVINLGVMTSQEEFIDAAI--ETDAD-AILVSS 62 (137)
T ss_pred CEEEEEeCCCChhHHHHH---HHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCC-EEEEcC
Confidence 456555 455555544 455678899999999986 55555554444 34433 455554
No 67
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=50.26 E-value=73 Score=29.76 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=65.8
Q ss_pred cccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecC
Q 023423 55 VTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP 134 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~ 134 (282)
|+.+.+..++.+.+.++-+..-..|+.|++-.|..|+...||++.=.++.......... ...|++|-..
T Consensus 17 TPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~-----------~~pvi~gv~~ 85 (303)
T PRK03620 17 TPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAG-----------RVPVIAGAGG 85 (303)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-----------CCcEEEecCC
Confidence 44456667788888777665566789999888889998999999999888877766431 2457777742
Q ss_pred CCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 135 RVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 135 R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
+-.-+-.+++-..+.|++.+.+
T Consensus 86 ---~t~~~i~~~~~a~~~Gadav~~ 107 (303)
T PRK03620 86 ---GTAQAIEYAQAAERAGADGILL 107 (303)
T ss_pred ---CHHHHHHHHHHHHHhCCCEEEE
Confidence 3334445667778899998766
No 68
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=50.20 E-value=83 Score=28.62 Aligned_cols=92 Identities=18% Similarity=0.131 Sum_probs=63.1
Q ss_pred cccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecC
Q 023423 55 VTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP 134 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~ 134 (282)
|+...+..++.+...++-...-..|+.|++-.|..|+...||.+.-.++.....+.... ...|++|- .
T Consensus 7 TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~-----------~~~vi~gv-~ 74 (281)
T cd00408 7 TPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAG-----------RVPVIAGV-G 74 (281)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCC-----------CCeEEEec-C
Confidence 44455666777777776554456689999988888888999999999888888776531 13465554 2
Q ss_pred CCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 135 RVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 135 R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
..+ -.=+..+++-..+.|++.+.+
T Consensus 75 ~~~-~~~~i~~a~~a~~~Gad~v~v 98 (281)
T cd00408 75 ANS-TREAIELARHAEEAGADGVLV 98 (281)
T ss_pred Ccc-HHHHHHHHHHHHHcCCCEEEE
Confidence 222 223445566778889997766
No 69
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=49.84 E-value=78 Score=29.33 Aligned_cols=90 Identities=14% Similarity=0.095 Sum_probs=63.8
Q ss_pred ccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCC
Q 023423 56 TDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPR 135 (282)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R 135 (282)
+...+..++.+.+.++-.-.-..|+.|++-.|..|+...||.+.-.++.+...+.... ...|++|-- .
T Consensus 11 Pf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~-----------~~pvi~gv~-~ 78 (289)
T cd00951 11 HFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAG-----------RVPVLAGAG-Y 78 (289)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-----------CCCEEEecC-C
Confidence 3344556777777776544456789999888888998999999988887777666431 246777764 2
Q ss_pred CChHHHHHHHHHHHHHCCCcEEEe
Q 023423 136 VSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 136 ~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
+-.-+-.+++-..+.|++.+.+
T Consensus 79 --~t~~~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 79 --GTATAIAYAQAAEKAGADGILL 100 (289)
T ss_pred --CHHHHHHHHHHHHHhCCCEEEE
Confidence 3334445678889999998866
No 70
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=49.39 E-value=91 Score=27.80 Aligned_cols=60 Identities=17% Similarity=0.056 Sum_probs=37.7
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEecc-CChHHHHHHhhcCCCCCCeEEEEecc
Q 023423 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMMTAS 187 (282)
Q Consensus 125 ~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~-~pTP~l~fav~~~~~~a~gGImITAS 187 (282)
..+|++|.=.--.=..=+..++.-|.+.|++|+++|. +|..-+--++. +.+++ -|.++++
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~--~~~~~-~V~lS~~ 148 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAK--EHKAD-IIGLSGL 148 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH--HcCCC-EEEEccc
Confidence 3578887643333333445666778999999999985 67776665554 44433 3444443
No 71
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=46.67 E-value=67 Score=26.06 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCcE
Q 023423 95 LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLV 156 (282)
Q Consensus 95 LTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V 156 (282)
=|-+.++.+|..+|..+.+. | ...|++++-...-.- --.+++.++.+.|+++
T Consensus 68 ~n~~aa~~vG~lla~ra~~~-----g----i~~v~fdr~~~~y~g-rv~a~~~~~re~Gl~f 119 (119)
T PF00861_consen 68 KNVEAAYLVGELLAKRALEK-----G----IAKVVFDRGGYKYHG-RVKALADGAREGGLEF 119 (119)
T ss_dssp SSHHHHHHHHHHHHHHHHHT-----T----SSEEEECTSTSSSSS-HHHHHHHHHHHTTCB-
T ss_pred CCEehHHHHHHHHHHHHHHc-----C----CcEEEEcCCCCcccH-HHHHHHHHHHHcCCCC
Confidence 46789999999999998875 3 367888886644333 4457799999999975
No 72
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=44.57 E-value=45 Score=27.53 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=30.4
Q ss_pred EecCCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEec
Q 023423 131 GKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTA 186 (282)
Q Consensus 131 G~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITA 186 (282)
|-|.+--+. +.++..|+++|++|+++|.-.+|.-.-.... +.+++ -|.|++
T Consensus 11 g~D~Hd~g~---~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~-e~~ad-ii~iSs 61 (132)
T TIGR00640 11 GQDGHDRGA---KVIATAYADLGFDVDVGPLFQTPEEIARQAV-EADVH-VVGVSS 61 (132)
T ss_pred CCCccHHHH---HHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-HcCCC-EEEEcC
Confidence 445555444 4556678999999999986655554322221 34443 355555
No 73
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=43.68 E-value=1e+02 Score=28.44 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=61.6
Q ss_pred cccccccccchhhhhhccccccc-cceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 55 VTDKYNEVVVDEEMDRIRRLQNG-SDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~Lf~g-tdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
|+...+..++.+.+.++-...-. .|+.|++-.|..|+...||.+.-.++.+........ ...|++|--
T Consensus 13 TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~-----------~~~viagvg 81 (293)
T PRK04147 13 TPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG-----------KVKLIAQVG 81 (293)
T ss_pred CcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC-----------CCCEEecCC
Confidence 44455666777877776554445 899999888888998999999998888777666431 134555542
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
. .+-.-+..+++-..+.|++.+.+
T Consensus 82 ~--~~t~~ai~~a~~a~~~Gad~v~v 105 (293)
T PRK04147 82 S--VNTAEAQELAKYATELGYDAISA 105 (293)
T ss_pred C--CCHHHHHHHHHHHHHcCCCEEEE
Confidence 2 22233344455567888887765
No 74
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=43.02 E-value=22 Score=33.88 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=50.3
Q ss_pred CeEEEEecCCCChHHHHHH------------HHHHHHHCCCcEEEeccCChHH---------HHHHhhcCCCCCCeEEEE
Q 023423 126 VKVSLGKDPRVSGPSLSVA------------VFAGLARAGCLVFDMGLATTPA---------CFMSTLLPPFAYDASIMM 184 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~a------------la~gL~s~Gv~V~dlG~~pTP~---------l~fav~~~~~~a~gGImI 184 (282)
..|++++|.+..+..=.-. +...+..+|++-..+..+.||. ..++++. ++++..|
T Consensus 149 aaIiLaFnp~dpsv~gr~~~l~~gg~~~~~gll~~ae~~GI~~pliD~avtplg~g~g~a~r~~~a~K~-k~G~PvG--- 224 (314)
T TIGR01114 149 AAIVLAFNPMDPTVEGKIDILEVGGGTSDKGMLEIAEECGIKYPLIDVAVTPLGAGAGAAVRSSFAVKA-KFGLPVG--- 224 (314)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCccccccHHHHHHHcCCCceeecccccCCCCCccHHHHHHHHHHH-HhCCCcC---
Confidence 5799999999988764433 6677889999988776666665 4566664 5665443
Q ss_pred eccCC-CCCCceEEEee
Q 023423 185 TASHL-PYTRNGLKFFT 200 (282)
Q Consensus 185 TASHN-P~~~NGiK~~~ 200 (282)
.|=|| |..|.++|=+.
T Consensus 225 ~g~hN~~saW~wlk~~~ 241 (314)
T TIGR01114 225 GGIHNVPSAWDWLREFK 241 (314)
T ss_pred cccccCchHHHHHHHhh
Confidence 23488 78899988543
No 75
>PF07984 DUF1693: Domain of unknown function (DUF1693) ; InterPro: IPR012937 This domain occurs in many hypothetical proteins. It also occurs in some prion-like proteins.
Probab=42.35 E-value=1.4e+02 Score=28.79 Aligned_cols=126 Identities=16% Similarity=0.075 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCC----ChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHH
Q 023423 95 LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRV----SGPSLSVAVFAGLARAGCLVFDMGLATTPACFMS 170 (282)
Q Consensus 95 LTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~----sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fa 170 (282)
||++.+.++-+.+.+-+.-+ |++..+ .=..|.+.+.+-|.+.|+.|-|+.
T Consensus 1 Ls~~Qv~rL~~vL~e~v~Ih----------------grgnfPTl~v~l~~LI~~Vr~~L~~~GI~VkdVR---------- 54 (320)
T PF07984_consen 1 LSWEQVQRLDKVLTEPVPIH----------------GRGNFPTLEVRLKDLIQVVRDRLEERGIPVKDVR---------- 54 (320)
T ss_pred CChHHHHHHHHHHcCCceec----------------cCCCceeEEeeHHHHHHHHHHHHHHcCCCccceE----------
Confidence 56777888777665433211 333332 346788899999999999999852
Q ss_pred hhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChHHHHHHHHHHHhhhhccccccccccCCCCcccchHHHHHHHHH
Q 023423 171 TLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSPVVEDICGEAARKFANRLTKVSTVLRNPPTRVDFMSTYAKHLR 250 (282)
Q Consensus 171 v~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~~i~~i~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~Yi~~L~ 250 (282)
+...++=+|=++++...||-+.+.-.-......+.+.+.+.+..-..+.... ....-.....-+.++|++.+.
T Consensus 55 -----LNGsaAShVL~~~~~~~Y~DLDlIF~V~l~s~~~f~~vk~~Vl~~Lld~LP~--~v~k~~it~~~lkeaYvqKmV 127 (320)
T PF07984_consen 55 -----LNGSAASHVLSSDNGQSYNDLDLIFSVDLPSEETFQIVKEAVLDCLLDFLPE--GVNKEKITPCTLKEAYVQKMV 127 (320)
T ss_pred -----EecceeeeeeccCCCCCccccceEEEecCCCchhHHHHHHHHHHHHHHhchh--hcccccccHHHHHHHHHHhhc
Confidence 2233444555666655566665554444444555566665554321111110 011100133457789999988
Q ss_pred HHh
Q 023423 251 DVI 253 (282)
Q Consensus 251 ~~i 253 (282)
+..
T Consensus 128 kV~ 130 (320)
T PF07984_consen 128 KVN 130 (320)
T ss_pred ccc
Confidence 764
No 76
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=42.08 E-value=3.2e+02 Score=26.15 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=60.6
Q ss_pred HHHHHHHCCCcEEEeccCChHHH--HHHhhcCCCCC-CeEEEEeccCCCCCCceEEEeeCC----------CC-CChHHH
Q 023423 145 VFAGLARAGCLVFDMGLATTPAC--FMSTLLPPFAY-DASIMMTASHLPYTRNGLKFFTKK----------GG-LTSPVV 210 (282)
Q Consensus 145 la~gL~s~Gv~V~dlG~~pTP~l--~fav~~~~~~a-~gGImITASHNP~~~NGiK~~~~~----------G~-l~~~~i 210 (282)
++..|...|+++.-+|++.=..= ..... ++.+. +.-|-|.. ..++.+|+.+.. |. +...++
T Consensus 42 Va~vL~~lG~~~~a~GflGg~tg~~~~~~l-~~~gi~~~fv~v~g----~TRinvki~~~~~~~~Tein~~Gp~is~~~~ 116 (310)
T COG1105 42 VARVLKDLGIPVTALGFLGGFTGEFFVALL-KDEGIPDAFVEVKG----DTRINVKILDEEDGEETEINFPGPEISEAEL 116 (310)
T ss_pred HHHHHHHcCCCceEEEecCCccHHHHHHHH-HhcCCCceEEEccC----CCeeeEEEEecCCCcEEEecCCCCCCCHHHH
Confidence 45667777777776654432222 22222 12221 23333333 467778887773 33 555667
Q ss_pred HHHHHHHHhhhhccccccccccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCC
Q 023423 211 EDICGEAARKFANRLTKVSTVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSL 278 (282)
Q Consensus 211 ~~i~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~ 278 (282)
+..++.+.+....... .-.-|++| ..+-.+|...|.+.+. .++-+|++|++.
T Consensus 117 ~~~l~~~~~~l~~~d~-VvlsGSlP---~g~~~d~y~~li~~~~------------~~g~~vilD~Sg 168 (310)
T COG1105 117 EQFLEQLKALLESDDI-VVLSGSLP---PGVPPDAYAELIRILR------------QQGAKVILDTSG 168 (310)
T ss_pred HHHHHHHHHhcccCCE-EEEeCCCC---CCCCHHHHHHHHHHHH------------hcCCeEEEECCh
Confidence 7777665442111000 00145653 3455677777887775 257999999975
No 77
>PRK14047 putative methyltransferase; Provisional
Probab=41.86 E-value=24 Score=33.57 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=51.2
Q ss_pred CeEEEEecCCCChHHH-----HHH-------HHHHHHHCCCcEEEeccCChHH---------HHHHhhcCCCCCCeEEEE
Q 023423 126 VKVSLGKDPRVSGPSL-----SVA-------VFAGLARAGCLVFDMGLATTPA---------CFMSTLLPPFAYDASIMM 184 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~l-----a~a-------la~gL~s~Gv~V~dlG~~pTP~---------l~fav~~~~~~a~gGImI 184 (282)
..|++++|...+|..= .+- +...+..+|++-..+....||+ ..++++. ++++..|
T Consensus 149 aaIiLaFn~~d~sv~gr~~~le~gg~~~~~gll~~ae~~GI~~~liD~avtplg~g~g~a~r~~~avK~-~~G~PvG--- 224 (310)
T PRK14047 149 SSIVLGFNAMDSSLKGRMEMLETGGGLLEKGLLEIADDCGITNILIDPSITPMGNGAGIALRMTIAAKA-KWGLPVG--- 224 (310)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCccccccHHHHHHHcCCCceeecccccCCCCCccHHHHHHHHHHH-HhCCCcC---
Confidence 5799999999887763 222 6667889999988887777766 3356653 4565433
Q ss_pred eccCC-CCCCceEEEeeCCC
Q 023423 185 TASHL-PYTRNGLKFFTKKG 203 (282)
Q Consensus 185 TASHN-P~~~NGiK~~~~~G 203 (282)
.|=|| |..|.++|=+...+
T Consensus 225 ~g~hN~~saW~wlk~~~k~~ 244 (310)
T PRK14047 225 SGIHNAPSAWNWLKDKKEKD 244 (310)
T ss_pred cccccCchHhHHHHHhcccC
Confidence 23388 88999999654333
No 78
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=41.47 E-value=81 Score=28.97 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=58.9
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+-+.+..++.+...++-+..-..|+.|++-.|..|+...||.+.-.++.....+.... ...|++|--
T Consensus 10 ~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~-----------~~~vi~gv~ 78 (289)
T PF00701_consen 10 ITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAG-----------RVPVIAGVG 78 (289)
T ss_dssp ---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTT-----------SSEEEEEEE
T ss_pred eCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccC-----------ceEEEecCc
Confidence 344455566777777776555557789999988888888899999999988877766532 245666643
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.- |-.=+-.+++-..+.|++.+.+
T Consensus 79 ~~--st~~~i~~a~~a~~~Gad~v~v 102 (289)
T PF00701_consen 79 AN--STEEAIELARHAQDAGADAVLV 102 (289)
T ss_dssp SS--SHHHHHHHHHHHHHTT-SEEEE
T ss_pred ch--hHHHHHHHHHHHhhcCceEEEE
Confidence 33 2333333455567889987655
No 79
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=41.33 E-value=1.4e+02 Score=25.57 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEecc
Q 023423 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL 161 (282)
Q Consensus 93 ~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~ 161 (282)
.+.+......|+.=+.+.|.+..+ +...++.+-+|. +..|..++.+.|+..|+-|+....
T Consensus 26 ~~~s~~~a~~iA~D~v~qL~~~yp------PA~Tt~~l~q~~---~D~Fg~aL~~aLR~~GYaV~e~~~ 85 (151)
T PRK13883 26 VQASAADQQKLATDAVQQLATLYP------PAQTRFELQQPT---PDAFGQALVKALRDKGYALLEYNP 85 (151)
T ss_pred cccCHHHHHHHHHHHHHHHHHhCC------CcceEEEEecCC---CcHHHHHHHHHHHHcCeEEEecCC
Confidence 468889999999999999988753 234688887766 579999999999999999996543
No 80
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=41.17 E-value=1.2e+02 Score=27.77 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=62.4
Q ss_pred cccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecC
Q 023423 55 VTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP 134 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~ 134 (282)
++...+..++.+...++-.-.-..|+.|++-.|..|+...||.+.-.++.+...+.... ...|++|-=.
T Consensus 10 TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~-----------~~~vi~gv~~ 78 (284)
T cd00950 10 TPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNG-----------RVPVIAGTGS 78 (284)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCC-----------CCcEEeccCC
Confidence 44455667777777776554456889999877888888899999999988877766431 1345544322
Q ss_pred CCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 135 RVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 135 R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.+-.-+..+++-..+.|++.+.+
T Consensus 79 --~~~~~~~~~a~~a~~~G~d~v~~ 101 (284)
T cd00950 79 --NNTAEAIELTKRAEKAGADAALV 101 (284)
T ss_pred --ccHHHHHHHHHHHHHcCCCEEEE
Confidence 23344455667778889986655
No 81
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=41.04 E-value=1.3e+02 Score=27.70 Aligned_cols=92 Identities=16% Similarity=0.114 Sum_probs=62.6
Q ss_pred cccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecC
Q 023423 55 VTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP 134 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~ 134 (282)
|+...+..++.+...++-.-.-..|+.|++-.|..|+..-||++.=.++.....+.... ...|++|-=.
T Consensus 11 TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~-----------~~~vi~gv~~ 79 (292)
T PRK03170 11 TPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNG-----------RVPVIAGTGS 79 (292)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCC-----------CCcEEeecCC
Confidence 44455666777777775444445789999877888888899999999988877776531 1346655433
Q ss_pred CCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 135 RVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 135 R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.+-.-+...++...+.|++.+.+
T Consensus 80 --~~~~~~i~~a~~a~~~G~d~v~~ 102 (292)
T PRK03170 80 --NSTAEAIELTKFAEKAGADGALV 102 (292)
T ss_pred --chHHHHHHHHHHHHHcCCCEEEE
Confidence 23344555567778889997766
No 82
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=41.01 E-value=1.4e+02 Score=27.53 Aligned_cols=92 Identities=15% Similarity=0.075 Sum_probs=61.9
Q ss_pred cccccccccchhhhhhcccccccc-ceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 55 VTDKYNEVVVDEEMDRIRRLQNGS-DVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~Lf~gt-dIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
|+-..+..++.+.+.++-.-.-.. |+.|++-.|..|+..-||.+.-.++.....+.... ...|++|--
T Consensus 10 TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~-----------~~~viagv~ 78 (288)
T cd00954 10 TPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG-----------KVTLIAHVG 78 (288)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-----------CCeEEeccC
Confidence 333455567777777764444456 89999888888888899999988888877766431 235666553
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
. .+-.-+..+++-..+.|++.+.+
T Consensus 79 ~--~~~~~ai~~a~~a~~~Gad~v~~ 102 (288)
T cd00954 79 S--LNLKESQELAKHAEELGYDAISA 102 (288)
T ss_pred C--CCHHHHHHHHHHHHHcCCCEEEE
Confidence 3 22233444566678999998765
No 83
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=38.48 E-value=25 Score=25.98 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=24.0
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
..|++..|.-..|+..+..+..-|...|++|..+
T Consensus 47 ~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~~v 80 (81)
T PF13662_consen 47 KEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVTRV 80 (81)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHG---------
T ss_pred ceEEEEeCcCHHHHHHHHHHHHHHHhhccccccC
Confidence 5799999999999999999999999999998753
No 84
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=38.37 E-value=1.6e+02 Score=27.46 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=61.5
Q ss_pred cccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecC
Q 023423 55 VTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP 134 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~ 134 (282)
|+...+..++.+.+.++-...-..|+.|++-.|..|+..-||.+.-.++......... | ...|++|-=.
T Consensus 10 TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~-------g----~~pvi~gv~~ 78 (294)
T TIGR02313 10 TPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA-------G----RIPFAPGTGA 78 (294)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-------C----CCcEEEECCc
Confidence 3445566778888777755555788999988888899899999999888887766543 1 2456655433
Q ss_pred CCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 135 RVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 135 R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
-.. .=+-.+++-..+.|++.+.+
T Consensus 79 ~~t--~~ai~~a~~A~~~Gad~v~v 101 (294)
T TIGR02313 79 LNH--DETLELTKFAEEAGADAAMV 101 (294)
T ss_pred chH--HHHHHHHHHHHHcCCCEEEE
Confidence 222 22233344457889987766
No 85
>PF02789 Peptidase_M17_N: Cytosol aminopeptidase family, N-terminal domain; InterPro: IPR008283 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The two zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3PEI_A 1GYT_C 3JRU_A 3H8F_D 3H8G_F 3H8E_A 3KZW_L 1LAP_A 1LAN_A 1LCP_B ....
Probab=37.99 E-value=1.3e+02 Score=23.46 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=40.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec-CCCChHHHHHHHHHHHHHCC
Q 023423 89 KGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD-PRVSGPSLSVAVFAGLARAG 153 (282)
Q Consensus 89 ~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D-~R~sS~~la~ala~gL~s~G 153 (282)
-|+..++|++.+.+++.+.+..+.+. + ...|.|.-+ .........++++.|+....
T Consensus 60 lG~~~~~~~~~~r~a~~~~~~~l~~~-----~----~~~v~i~l~~~~~~~~~~~~~~~~g~~l~~ 116 (126)
T PF02789_consen 60 LGKKEKLTAESLRKAGAAAARALKKL-----K----VKSVAIDLPIDGENSDEAAEAAAEGALLGS 116 (126)
T ss_dssp EESCTGBCHHHHHHHHHHHHHHHHHT-----T-----SEEEEEGCSSBTTCHHHHHHHHHHHHHHT
T ss_pred CCCcCcCCHHHHHHHHHHHHHHHhhC-----C----ceEEEEeCcccccCcHHHHHHHHHHHHHcC
Confidence 34446799999999999999999874 1 356777766 33444488888888876543
No 86
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=36.88 E-value=97 Score=28.36 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=47.0
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChHHHHHH
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSPVVEDI 213 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~~i~~i 213 (282)
.|.++..|...+.+.....|..|+.+|-.|.=+-..+-.. +..+ |+.|-+.|+++ +.+++.+++
T Consensus 86 ~Rv~G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l-~~~y--~l~i~g~~~Gy-------------f~~~e~~~i 149 (243)
T PRK03692 86 SRVAGADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKL-RTQW--NVNIVGSQDGY-------------FTPEQRQAL 149 (243)
T ss_pred CeeChHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHH-HHHh--CCEEEEEeCCC-------------CCHHHHHHH
Confidence 4889999999999999999999999998776333332221 1122 56666666544 334566667
Q ss_pred HHHHHh
Q 023423 214 CGEAAR 219 (282)
Q Consensus 214 ~~~~~~ 219 (282)
++.+.+
T Consensus 150 ~~~I~~ 155 (243)
T PRK03692 150 FERIHA 155 (243)
T ss_pred HHHHHh
Confidence 766654
No 87
>KOG3852 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.34 E-value=2.9e+02 Score=26.77 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChHHHHHHHHHH
Q 023423 138 GPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSPVVEDICGEA 217 (282)
Q Consensus 138 S~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~~i~~i~~~~ 217 (282)
-..+.+.+-+-|.+.|+.|.|..+ +..++=+|-+|||.-.|-.+.+.-.-......+.+-+.+.+
T Consensus 80 p~~ii~vvr~~l~~~gi~v~dvRL---------------nGsaAs~vl~~d~gl~ykDLDlIF~v~l~~e~eFq~vkd~V 144 (426)
T KOG3852|consen 80 PKDIIQVVRSRLEEQGIEVRDVRL---------------NGSAASHVLHSDNGLSYKDLDLIFPVDLPGEAEFQLVKDVV 144 (426)
T ss_pred HHHHHHHHHHHHHhcCeeEEEEee---------------cCcccceeeecCCCcCccccceEEeecCCCchhhHHHHHHH
Confidence 456777888889999999998732 23344467777887666666655443334455666666665
Q ss_pred Hhhhhcc-ccccccccCCCCcccchHHHHHHHHHHHh
Q 023423 218 ARKFANR-LTKVSTVLRNPPTRVDFMSTYAKHLRDVI 253 (282)
Q Consensus 218 ~~~~~~~-~~~~~~~g~~~~~~~d~~~~Yi~~L~~~i 253 (282)
..-..+. +.+ .+.-.+...-+.++|++.|.+..
T Consensus 145 l~clldflP~~---v~keKisp~tlKdaYvqKlvKVc 178 (426)
T KOG3852|consen 145 LDCLLDFLPEG---VNKEKISPLTLKDAYVQKLVKVC 178 (426)
T ss_pred HHHHHHhCccc---ccccccChhHHHHHHHHHHHHhc
Confidence 4321111 111 22211233457889999998865
No 88
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=34.31 E-value=1.9e+02 Score=27.90 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCC-ChHHHHHHHHHHHH--HCCCcEEEecc
Q 023423 99 AVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRV-SGPSLSVAVFAGLA--RAGCLVFDMGL 161 (282)
Q Consensus 99 ~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~-sS~~la~ala~gL~--s~Gv~V~dlG~ 161 (282)
...++-..|-.|.... ..++|+|-|++.. +.+++|+++++|+. ..|++|....+
T Consensus 230 ~~~~~~~~Y~~~~~~~---------~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~ 286 (394)
T PRK11921 230 NPLQIVEKYLEWAANY---------QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNS 286 (394)
T ss_pred CHHHHHHHHHHHhhcC---------CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEEC
Confidence 3445556677776432 1367888888876 68899999999999 78988754433
No 89
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=33.75 E-value=37 Score=33.00 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=30.3
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHCCCcEE
Q 023423 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVF 157 (282)
Q Consensus 125 ~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~ 157 (282)
-++|||+.|.-++++.++.-+.+-|.++|++|.
T Consensus 67 i~rVVi~~D~d~~G~~~~~~~~~~L~~aGi~V~ 99 (360)
T PRK14719 67 ISEVILLTDFDRAGRVYAKNIMEEFQSRGIKVN 99 (360)
T ss_pred CCEEEEEECCCCCCCccchHHHHHHHHCCCEEE
Confidence 368999999999999999999999999999993
No 90
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=33.17 E-value=2.8e+02 Score=25.34 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEe-ccCChHH
Q 023423 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTPA 166 (282)
Q Consensus 93 ~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dl-G~~pTP~ 166 (282)
..=||-.++.+++..+....+. |. ....|.|-.= + -.++++.+|.+.|++|..+ ...|.|-
T Consensus 158 KKsTpfAAQ~aae~aakka~~~-----GI--k~V~V~vKGp----G--gREtALRaL~~~GLkIt~I~DvTpiPH 219 (233)
T PTZ00090 158 LQQSERCAYRIGENIAKKCRRL-----GI--FAVDIKFRRI----M--RVETVLQAFYANGLQVTQIIHEPRLPK 219 (233)
T ss_pred ccCCHHHHHHHHHHHHHHHHHc-----CC--eEEEEEEeCC----C--hHHHHHHHHHHCCCEEEEEEECCCCCc
Confidence 4679999999999999988764 31 1123333221 2 2889999999999999998 7877774
No 91
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=32.31 E-value=2.1e+02 Score=24.42 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCcEEE
Q 023423 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (282)
Q Consensus 93 ~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~d 158 (282)
.++|......|+.=..+.|.+... +...++.+-+|. ..|..++.+.|+.-|.-|+-
T Consensus 32 ~~~t~~aa~~iA~D~vsqLae~~p------Pa~tt~~l~q~~----d~Fg~aL~~aLr~~GYaVvt 87 (145)
T PRK13835 32 AELSGPAASAIAGDMVSRLAEQIG------PGTTTIKLKKDT----SPFGQALEAALKGWGYAVVT 87 (145)
T ss_pred hhhcchHHHHHHHHHHHHHHHhcC------CCceEEEEeecC----cHHHHHHHHHHHhcCeEEee
Confidence 467777788888888888887652 334789999998 28999999999999999995
No 92
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=32.04 E-value=63 Score=25.77 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=32.4
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCChH
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTP 165 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP 165 (282)
+|+|+.|....|....+..+.-....|.+++.+-+.+.|
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~ 39 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPI 39 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCc
Confidence 489999999999998888888777789998888766543
No 93
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=31.56 E-value=2.2e+02 Score=24.14 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=49.0
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChHHHHHH
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSPVVEDI 213 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~~i~~i 213 (282)
.|.++..|...+.+-+...|..|+.+|-.+-=.-..+... + ..-.|+-|.+.|+|+- ...+.+++
T Consensus 29 ~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l-~-~~yP~l~ivg~~~g~f-------------~~~~~~~i 93 (172)
T PF03808_consen 29 ERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANL-R-RRYPGLRIVGYHHGYF-------------DEEEEEAI 93 (172)
T ss_pred cccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH-H-HHCCCeEEEEecCCCC-------------ChhhHHHH
Confidence 6889999999999999999999999987764333333221 1 1234677777766654 34566677
Q ss_pred HHHHHh
Q 023423 214 CGEAAR 219 (282)
Q Consensus 214 ~~~~~~ 219 (282)
++.+.+
T Consensus 94 ~~~I~~ 99 (172)
T PF03808_consen 94 INRINA 99 (172)
T ss_pred HHHHHH
Confidence 766644
No 94
>PLN02739 serine acetyltransferase
Probab=31.47 E-value=38 Score=32.97 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCC
Q 023423 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPR 135 (282)
Q Consensus 93 ~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R 135 (282)
.|+|+++...++.+|+..+..+ ++|++|+|..
T Consensus 322 ~DaT~e~~~~Ia~ay~~lf~~g-----------~sI~~g~~~~ 353 (355)
T PLN02739 322 YDATREFFQNVAVAYRETIPNG-----------SSVSGSCREK 353 (355)
T ss_pred hhhhHHHHHHHHHHHHhhccCC-----------CeEEeecccc
Confidence 4799999999999999998643 7899999864
No 95
>PLN02417 dihydrodipicolinate synthase
Probab=31.42 E-value=1.8e+02 Score=26.73 Aligned_cols=92 Identities=10% Similarity=-0.039 Sum_probs=57.8
Q ss_pred cccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecC
Q 023423 55 VTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP 134 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~ 134 (282)
|+...+..++.+.+.++-.-.-..|+.|++-.|..|+..-||.+.-.++.+........ ...|++|--.
T Consensus 11 TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~-----------~~pvi~gv~~ 79 (280)
T PLN02417 11 TPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG-----------KIKVIGNTGS 79 (280)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCC-----------CCcEEEECCC
Confidence 33444556677777766544456789999888888888999999988887776555321 1345555433
Q ss_pred CCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 135 RVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 135 R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
-... =+-.+++-..+.|++.+.+
T Consensus 80 ~~t~--~~i~~a~~a~~~Gadav~~ 102 (280)
T PLN02417 80 NSTR--EAIHATEQGFAVGMHAALH 102 (280)
T ss_pred ccHH--HHHHHHHHHHHcCCCEEEE
Confidence 2222 2233344457778876655
No 96
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=30.61 E-value=3.1e+02 Score=25.88 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCcEEE-eccCChH--HHHHHhhcCCCCCC
Q 023423 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD-MGLATTP--ACFMSTLLPPFAYD 179 (282)
Q Consensus 103 ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~d-lG~~pTP--~l~fav~~~~~~a~ 179 (282)
.+.+++.++.+.. + .++|+|=++.-..++.+.+++-+.|.+.|.++.. ....|.. .-......+..+.+
T Consensus 134 q~~~~~~~l~~~~----~----~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~v~~i~~~~~d 205 (366)
T COG0683 134 QAAAAADYLVKKG----G----KKRVAIIGDDYAYGEGLADAFKAALKALGGEVVVEEVYAPGDTDFSALVAKIKAAGPD 205 (366)
T ss_pred HHHHHHHHHHHhc----C----CcEEEEEeCCCCcchhHHHHHHHHHHhCCCeEEEEEeeCCCCCChHHHHHHHHhcCCC
Confidence 5667888887652 2 2489999999999999999999999999997443 2333332 22222222234444
Q ss_pred eEEEEeccCCC
Q 023423 180 ASIMMTASHLP 190 (282)
Q Consensus 180 gGImITASHNP 190 (282)
.|+++..|.+
T Consensus 206 -~v~~~~~~~~ 215 (366)
T COG0683 206 -AVLVGGYGPD 215 (366)
T ss_pred -EEEECCCCcc
Confidence 5666665554
No 97
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=30.55 E-value=2e+02 Score=23.93 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCcE
Q 023423 96 TPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLV 156 (282)
Q Consensus 96 Tpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V 156 (282)
|-+.++.+|..+|.-..+. | ...||+++-.-.-.-.+ .+++.+..++|+++
T Consensus 75 N~~aA~~vG~lia~ra~~k-----g----i~~vVfdr~g~~yhgRV-~Ala~~AreaGL~f 125 (125)
T COG0256 75 NTEAAYLVGKLIAERALAK-----G----IEEVVFDRGGYKYHGRV-AALADGAREAGLEF 125 (125)
T ss_pred CHHHHHHHHHHHHHHHHHc-----C----CcEEEEcCCCCCcchHH-HHHHHHHHHcCcCC
Confidence 6899999999999887765 3 46788877665544444 35789999999863
No 98
>CHL00041 rps11 ribosomal protein S11
Probab=29.90 E-value=3e+02 Score=22.25 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEe-ccCChH
Q 023423 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (282)
Q Consensus 93 ~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dl-G~~pTP 165 (282)
..-|+..+..+++.+++.+.+. |. +.-.|.| + . .+ .-.+++..+|...|+.|..+ ..+|.|
T Consensus 51 rK~T~~Aa~~~a~~~~~~~~~~-----gi--~~v~I~i-k-G--~G-~Gr~~~ir~l~~~glkI~~I~D~Tpip 112 (116)
T CHL00041 51 RKGTPFAAQTAAENAIRTVIDQ-----GM--KRAEVMI-K-G--PG-LGRDTALRAIRRSGLKLSSIRDVTPMP 112 (116)
T ss_pred ccCCHHHHHHHHHHHHHHHHHc-----CC--cEEEEEE-E-C--CC-CcHHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 4689999999999999988764 31 1223444 1 1 12 23477789999999999988 666655
No 99
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=29.53 E-value=2.6e+02 Score=24.42 Aligned_cols=59 Identities=17% Similarity=-0.033 Sum_probs=36.2
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEec-cCChHHHHHHhhcCCCCCCeEEEEecc
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMG-LATTPACFMSTLLPPFAYDASIMMTAS 187 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG-~~pTP~l~fav~~~~~~a~gGImITAS 187 (282)
.+|+++.=.--.=..=+..+...|.+.|++|+++| -+|..-+--++. +.+. --|.++++
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~--~~~p-d~v~lS~~ 144 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK--KEKP-LMLTGSAL 144 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH--HcCC-CEEEEccc
Confidence 57776653333333334556667899999999997 455555555554 4443 34666665
No 100
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=29.17 E-value=51 Score=24.91 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=35.7
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHH
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACF 168 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~ 168 (282)
++|+|+.|....+..+.+....-....|.+|+.+.+.+.+...
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~ 45 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQY 45 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccc
Confidence 5899999999999999999888888889999888666655444
No 101
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=28.48 E-value=3.5e+02 Score=27.11 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCC-hHHHHHHHHHHHHHC--CCcEEEeccCCh
Q 023423 99 AVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVS-GPSLSVAVFAGLARA--GCLVFDMGLATT 164 (282)
Q Consensus 99 ~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~s-S~~la~ala~gL~s~--Gv~V~dlG~~pT 164 (282)
...++-..|-+|.... .+.+|+|-|+.... .+++|+++++||.+. |++|....+.-+
T Consensus 234 ~~~~~l~~Y~~~~~~~---------~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~ 293 (479)
T PRK05452 234 NPTQIVELYLKWAADY---------QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARS 293 (479)
T ss_pred CHHHHHHHHHHHhhcc---------CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCC
Confidence 3444444566665532 13679999998864 899999999999976 676654444333
No 102
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=28.46 E-value=3e+02 Score=23.07 Aligned_cols=66 Identities=23% Similarity=0.199 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec---CCCChHHHHHHHHHHHHHCCCcEEEe-ccCChH
Q 023423 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD---PRVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (282)
Q Consensus 93 ~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D---~R~sS~~la~ala~gL~s~Gv~V~dl-G~~pTP 165 (282)
..-||-.+...++.+++...+. |. ....|.|--. ...+--.=.++.+.+|...|++|..+ ..+|.|
T Consensus 48 kK~TpyAAq~aae~~~~~~~~~-----Gi--~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiP 117 (132)
T PRK09607 48 DESSPYAAMQAAEKAAEDAKEK-----GI--TGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIP 117 (132)
T ss_pred ccCCHHHHHHHHHHHHHHHHHc-----CC--cEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 5789999999999999988764 41 1223444221 11111123567789999999999999 677776
No 103
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=28.12 E-value=2.8e+02 Score=21.28 Aligned_cols=82 Identities=5% Similarity=-0.077 Sum_probs=48.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCCh
Q 023423 128 VSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTS 207 (282)
Q Consensus 128 VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~ 207 (282)
++++.-+-.+|-+++..+-+.|...|+++--.. ++.-.+. -. ..++| +.+|..+-+....+++.....+-+..
T Consensus 6 LvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~-~~~~e~~--~~--~~~~D--~iv~t~~~~~~~~~ip~~~~~~llt~ 78 (94)
T PRK10310 6 IVACGGAVATSTMAAEEIKELCQSHNIPVELIQ-CRVNEIE--TY--MDGVH--LICTTARVDRSFGDIPLVHGMPFVSG 78 (94)
T ss_pred EEECCCchhHHHHHHHHHHHHHHHCCCeEEEEE-ecHHHHh--hh--cCCCC--EEEECCccccccCCCCEEEEeecccc
Confidence 345555556888889999999999999854333 3333332 11 12344 67888887776666665544444444
Q ss_pred HHHHHHHHH
Q 023423 208 PVVEDICGE 216 (282)
Q Consensus 208 ~~i~~i~~~ 216 (282)
-+.+++.+.
T Consensus 79 ~~~~~~~e~ 87 (94)
T PRK10310 79 VGIEALQNK 87 (94)
T ss_pred cCHHHHHHH
Confidence 344444443
No 104
>PRK04017 hypothetical protein; Provisional
Probab=27.85 E-value=1.1e+02 Score=25.54 Aligned_cols=32 Identities=22% Similarity=0.060 Sum_probs=30.1
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCcEE
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVF 157 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~ 157 (282)
..|+|-.|.-..|..+.+-+..-|...|+.|-
T Consensus 66 r~VIILTD~D~~GekIr~~l~~~l~~~G~~vd 97 (132)
T PRK04017 66 KEVIILTDFDRKGEELAKKLSEYLQGYGIKVD 97 (132)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhCCCCcc
Confidence 57999999999999999999999999999874
No 105
>PF04069 OpuAC: Substrate binding domain of ABC-type glycine betaine transport system; InterPro: IPR007210 This domain is a part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. It is often found in integral membrane proteins or proteins predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis []. OpuBC is closely related and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine []. L-carnitine is important for osmoregulation in Listeria monocytogenes. This domain is found also in proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).; GO: 0005215 transporter activity, 0005488 binding, 0006810 transport; PDB: 3R6U_A 3TMG_C 3MAM_A 1SW5_C 1SW4_B 1SW1_A 1SW2_A 3O66_A 1R9Q_A 1R9L_A ....
Probab=27.46 E-value=1.9e+02 Score=25.79 Aligned_cols=60 Identities=20% Similarity=0.163 Sum_probs=45.3
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhhcCCCCCCeEE-EEeccC
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASI-MMTASH 188 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGI-mITASH 188 (282)
+|+||.-.-..+..+++.+...|...|+.|...+.-.++.++-++. +-..+.-. .-+.++
T Consensus 2 ~I~ig~~~w~~~~~~a~i~~~~Le~~G~~v~~~~~~~~~~~~~al~--~G~iD~~~~~w~~~~ 62 (257)
T PF04069_consen 2 PIVIGSKNWTESQILAEIYAQLLEAAGYVVEVVNLGSTPVIFAALA--SGDIDIYPEEWTPTT 62 (257)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTEEEEEEEESSHHHHHHHHH--TTSSSEEEEEEETTT
T ss_pred eEEEecCCCcHHHHHHHHHHHHHHHCCCeEEEecCCchHHHHHHHH--CCCCeEEhhhcCchh
Confidence 5889998888999999999999999999777778888788877775 43344433 334443
No 106
>PF13362 Toprim_3: Toprim domain
Probab=27.20 E-value=1.7e+02 Score=22.01 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=32.4
Q ss_pred CeEEEEecCCCC--hHHHHHHHHHHHHHCCCcEEEecc
Q 023423 126 VKVSLGKDPRVS--GPSLSVAVFAGLARAGCLVFDMGL 161 (282)
Q Consensus 126 ~~VvVG~D~R~s--S~~la~ala~gL~s~Gv~V~dlG~ 161 (282)
..|+|.-|.-.. +...+..+++.|.+.|+.+..+-+
T Consensus 42 ~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p 79 (96)
T PF13362_consen 42 RRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEP 79 (96)
T ss_pred CeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECC
Confidence 679999999999 999999999999999999887644
No 107
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=26.92 E-value=5.4e+02 Score=24.29 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCC---ChH---HHHHHHHHHHHHCCCcEEEe
Q 023423 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRV---SGP---SLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 94 dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~---sS~---~la~ala~gL~s~Gv~V~dl 159 (282)
.+|++....-+..+...+... + .....|+||-|++. +.. .+.+.+.+.+...|..++..
T Consensus 124 ~i~~~~l~~a~~~~~~~~~~l-----~--~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vt 188 (311)
T PF06258_consen 124 RITPERLAEAAAAWAPRLAAL-----P--RPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVT 188 (311)
T ss_pred cCCHHHHHHHHHhhhhhhccC-----C--CCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 677777777777766666532 1 11234677777764 233 56677777777777666666
No 108
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=26.81 E-value=3.9e+02 Score=22.63 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=41.4
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEec
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTA 186 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITA 186 (282)
-.++|+..-+..+.-.+.+++.+.+.|-+++.+|+-.-=.=.|.... ......+++|+.
T Consensus 75 l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~-~~~l~~~v~i~v 133 (172)
T PF03808_consen 75 LRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQERWIARH-RQRLPAGVIIGV 133 (172)
T ss_pred eEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH-HHHCCCCEEEEE
Confidence 45677777666888999999999999999999987655444554432 223344466665
No 109
>PRK09271 flavodoxin; Provisional
Probab=26.68 E-value=1.7e+02 Score=24.43 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=24.4
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHHCCCcEE
Q 023423 127 KVSLGKDPRV-SGPSLSVAVFAGLARAGCLVF 157 (282)
Q Consensus 127 ~VvVG~D~R~-sS~~la~ala~gL~s~Gv~V~ 157 (282)
+|+|-|.+.. +.+.+++.++++|.+.|++|.
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~ 33 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCEEAGHEVD 33 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHHhCCCeeE
Confidence 3667777665 678899999999999998773
No 110
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=26.47 E-value=2.2e+02 Score=24.35 Aligned_cols=69 Identities=23% Similarity=0.335 Sum_probs=45.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEE----EecCCCChHHHHHHHHHHHHHCCCcEEEe-ccCC
Q 023423 89 KGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSL----GKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLAT 163 (282)
Q Consensus 89 ~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvV----G~D~R~sS~~la~ala~gL~s~Gv~V~dl-G~~p 163 (282)
+|....=||-.+...++.++..+.+. |. ....|.| |.-.+-.++ =.++.+.+|...|++|..+ .++|
T Consensus 63 Kg~r~KsTpyAAq~aa~~~a~k~~~~-----Gi--~~v~V~vr~~gg~~~kg~Gp-Gr~~airaL~~~glkI~~I~DvTP 134 (149)
T PTZ00129 63 KADRDESSPYAAMMAAQDVAARCKEL-----GI--NALHIKLRATGGVRTKTPGP-GAQAALRALARAGLKIGRIEDVTP 134 (149)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHc-----CC--eEEEEEEEecCCCCCCCCCC-CHHHHHHHHHHCCCEEEEEEecCC
Confidence 33333678999999999999888764 31 2234555 111122222 2567789999999999999 6777
Q ss_pred hH
Q 023423 164 TP 165 (282)
Q Consensus 164 TP 165 (282)
.|
T Consensus 135 iP 136 (149)
T PTZ00129 135 IP 136 (149)
T ss_pred CC
Confidence 76
No 111
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=24.98 E-value=3.4e+02 Score=23.56 Aligned_cols=56 Identities=23% Similarity=0.191 Sum_probs=35.0
Q ss_pred CeEEEEe---cCCCChHHHHHHHHHHHHHCCCcEEEecc-CChHHHHHHhhcCCCCCCeEEEEecc
Q 023423 126 VKVSLGK---DPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMMTAS 187 (282)
Q Consensus 126 ~~VvVG~---D~R~sS~~la~ala~gL~s~Gv~V~dlG~-~pTP~l~fav~~~~~~a~gGImITAS 187 (282)
.+|+++. |.+.-+- ..++..|...|++|+++|. +|...+--++. +.+.+ -|.++++
T Consensus 83 ~~vl~~~~~gd~H~lG~---~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~--~~~~d-~v~lS~~ 142 (201)
T cd02070 83 GKVVIGTVEGDIHDIGK---NLVATMLEANGFEVIDLGRDVPPEEFVEAVK--EHKPD-ILGLSAL 142 (201)
T ss_pred CeEEEEecCCccchHHH---HHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCC-EEEEecc
Confidence 5777664 5554444 4556678999999999984 56666655554 33332 4555553
No 112
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=24.86 E-value=3.6e+02 Score=24.95 Aligned_cols=92 Identities=12% Similarity=0.077 Sum_probs=61.0
Q ss_pred cccccccccchhhhhhccccccccc-eeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 55 VTDKYNEVVVDEEMDRIRRLQNGSD-VRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~Lf~gtd-IRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
|+...+..++.+.+.++-+-.-..| +.|++-.|..|+..-||.+.-.++.+...+... + ...|++|-=
T Consensus 10 TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-------~----~~pvi~gv~ 78 (290)
T TIGR00683 10 VSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-------D----QIALIAQVG 78 (290)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC-------C----CCcEEEecC
Confidence 3344455667777777654455677 899888888888899999999998887776642 1 235666632
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.- +-.=+..+++-..+.|++-+.+
T Consensus 79 ~~--~t~~~i~la~~a~~~Gad~v~v 102 (290)
T TIGR00683 79 SV--NLKEAVELGKYATELGYDCLSA 102 (290)
T ss_pred CC--CHHHHHHHHHHHHHhCCCEEEE
Confidence 11 2233344456678889987766
No 113
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=24.75 E-value=3.6e+02 Score=21.44 Aligned_cols=60 Identities=23% Similarity=0.210 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEE-EecCCCChHHHHHHHHHHHHHCCCcEEEe-ccCChH
Q 023423 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSL-GKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (282)
Q Consensus 93 ~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvV-G~D~R~sS~~la~ala~gL~s~Gv~V~dl-G~~pTP 165 (282)
..-|+..+..+++.++..+.+. | -..|.| =+- .++ -.+++..+|...|+.+..+ ..+|.|
T Consensus 38 rk~t~~Aa~~~a~~~~~~~~~~-----g----i~~v~v~~kG---~G~-gr~~~ir~l~~~glkI~~I~D~T~ip 99 (108)
T TIGR03632 38 KKSTPYAAQLAAEDAAKKAKEF-----G----MKTVDVYVKG---PGA-GRESAIRALQAAGLEVTSIKDVTPIP 99 (108)
T ss_pred ccCCHHHHHHHHHHHHHHHHHc-----C----CcEEEEEEEC---CCC-cHHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 4789999999999999888764 3 133322 222 222 3678899999999999988 566655
No 114
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=24.73 E-value=39 Score=32.00 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=51.5
Q ss_pred CeEEEEecCCCChHHHHH------------HHHHHHHHCCCcEEEe--ccCChHH-HH------HHhhcCCCCCCeEEEE
Q 023423 126 VKVSLGKDPRVSGPSLSV------------AVFAGLARAGCLVFDM--GLATTPA-CF------MSTLLPPFAYDASIMM 184 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~------------ala~gL~s~Gv~V~dl--G~~pTP~-l~------fav~~~~~~a~gGImI 184 (282)
..||+++|....+..=.- -+...+...|++-..+ +++|.|. .. ++++. ++++..|
T Consensus 144 aaIvLaFn~~d~s~~gr~~~le~~~~~~~kgll~~a~e~GI~~~LvD~~v~plgsg~g~s~r~~~~vK~-~~G~P~G--- 219 (296)
T PF02007_consen 144 AAIVLAFNPMDPSVEGRIEMLENGGGGQDKGLLDIAEECGIENPLVDTAVTPLGSGAGISIRAIFAVKA-KFGYPVG--- 219 (296)
T ss_pred EEEEEecCCCCCChhhhHHHHhccCcccccchHHHHHHcCCcceeecccccCCcccchHHHHHHHHHHH-HhCCCcc---
Confidence 579999999998875443 3445577899997655 7777776 32 45553 5777666
Q ss_pred eccCC-CCCCceEEEeeCCCC
Q 023423 185 TASHL-PYTRNGLKFFTKKGG 204 (282)
Q Consensus 185 TASHN-P~~~NGiK~~~~~G~ 204 (282)
.|.|| |+.|.++|=+.+...
T Consensus 220 ~a~hN~~s~W~wlr~~~k~~~ 240 (296)
T PF02007_consen 220 CAIHNAPSAWKWLREYKKKEG 240 (296)
T ss_pred cccccchhHHHHHHHhccccc
Confidence 36688 788988886655443
No 115
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=24.65 E-value=4.2e+02 Score=24.32 Aligned_cols=83 Identities=11% Similarity=0.066 Sum_probs=59.1
Q ss_pred cccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHH
Q 023423 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (282)
Q Consensus 61 ~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~ 140 (282)
..++.+.+.++-.-.-..|+.|++--|..|+..-||.+.-.++.+...+.. .+|++|-= ..+..
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~--------------~~vi~gvg--~~~~~ 78 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT--------------DKVIFQVG--SLNLE 78 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc--------------CCEEEEeC--cCCHH
Confidence 456777777765555578999998888889989999999988888775432 12555532 24455
Q ss_pred HHHHHHHHHHHCCCcEEEe
Q 023423 141 LSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 141 la~ala~gL~s~Gv~V~dl 159 (282)
-+..+++-..+.|++-+.+
T Consensus 79 ~ai~~a~~a~~~Gad~v~v 97 (279)
T cd00953 79 ESIELARAAKSFGIYAIAS 97 (279)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 5556677789999997766
No 116
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.75 E-value=2.2e+02 Score=26.33 Aligned_cols=50 Identities=22% Similarity=0.022 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEec
Q 023423 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMG 160 (282)
Q Consensus 103 ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG 160 (282)
.+.+++.++.+.. +.++|.+-++.-..+..+.+.+.+.|.+.|++|....
T Consensus 124 ~~~~~a~~~~~~~--------~~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~ 173 (347)
T cd06335 124 QAPFLVDEAVKRG--------GFKKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVE 173 (347)
T ss_pred HHHHHHHHHHHhc--------CCCeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEe
Confidence 4567777776541 1357777777777899999999999999999987553
No 117
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=23.12 E-value=65 Score=28.00 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=31.7
Q ss_pred EecCCCChHHHHHHHHHHHHH---CCCcEEEe--ccCChHHHHHHhhcCCCCCCeEEEE
Q 023423 131 GKDPRVSGPSLSVAVFAGLAR---AGCLVFDM--GLATTPACFMSTLLPPFAYDASIMM 184 (282)
Q Consensus 131 G~D~R~sS~~la~ala~gL~s---~Gv~V~dl--G~~pTP~l~fav~~~~~~a~gGImI 184 (282)
+.++|+++....+++...|.. .|..|+|+ |. -.+.+-.. +.+|.-.++|
T Consensus 18 ~~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGS---GalGlEAL--SRGA~~v~fV 71 (183)
T PF03602_consen 18 GDNTRPTTDRVREALFNILQPRNLEGARVLDLFAGS---GALGLEAL--SRGAKSVVFV 71 (183)
T ss_dssp --TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TT---SHHHHHHH--HTT-SEEEEE
T ss_pred CCCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCcc---CccHHHHH--hcCCCeEEEE
Confidence 689999999999999999996 49999999 43 33443333 3356555544
No 118
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=23.10 E-value=3.6e+02 Score=20.90 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=21.6
Q ss_pred EecCCCChHHHHHHHHHHHHHCCCcEEEeccCChH
Q 023423 131 GKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTP 165 (282)
Q Consensus 131 G~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP 165 (282)
+-|.+..+- ..++..|...|++|+++|...+|
T Consensus 8 ~~e~H~lG~---~~~~~~l~~~G~~V~~lg~~~~~ 39 (119)
T cd02067 8 GGDGHDIGK---NIVARALRDAGFEVIDLGVDVPP 39 (119)
T ss_pred CCchhhHHH---HHHHHHHHHCCCEEEECCCCCCH
Confidence 445555444 35666789999999999754443
No 119
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=23.10 E-value=2.2e+02 Score=28.06 Aligned_cols=89 Identities=24% Similarity=0.268 Sum_probs=51.4
Q ss_pred ccccccceeeeeccCCCCC----CCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHH
Q 023423 73 RLQNGSDVRGVALEGEKGR----TVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAG 148 (282)
Q Consensus 73 ~Lf~gtdIRGi~~~g~~g~----~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~g 148 (282)
.-+.++||||+--.-|.+. -.|++|+.+..|-.-+-.- . + ....++-.|+ ..
T Consensus 58 DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N---~-----~----~~~~v~n~DA------------N~ 113 (380)
T COG1867 58 DALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN---S-----G----EDAEVINKDA------------NA 113 (380)
T ss_pred ecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc---C-----c----ccceeecchH------------HH
Confidence 3468999999732111111 2489999888765544211 0 1 2334444563 22
Q ss_pred HH-H--CCCcEEEec--cCChHHHHHHhhcCCCCCCeEEEEecc
Q 023423 149 LA-R--AGCLVFDMG--LATTPACFMSTLLPPFAYDASIMMTAS 187 (282)
Q Consensus 149 L~-s--~Gv~V~dlG--~~pTP~l~fav~~~~~~a~gGImITAS 187 (282)
|+ . ..++|+|+. =.|.|.+--|.. ..+-.|=+-|||.
T Consensus 114 lm~~~~~~fd~IDiDPFGSPaPFlDaA~~--s~~~~G~l~vTAT 155 (380)
T COG1867 114 LLHELHRAFDVIDIDPFGSPAPFLDAALR--SVRRGGLLCVTAT 155 (380)
T ss_pred HHHhcCCCccEEecCCCCCCchHHHHHHH--HhhcCCEEEEEec
Confidence 22 2 689999994 467777765654 3333566778884
No 120
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=22.44 E-value=1.5e+02 Score=25.23 Aligned_cols=57 Identities=25% Similarity=0.242 Sum_probs=41.6
Q ss_pred cCCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCC
Q 023423 133 DPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPY 191 (282)
Q Consensus 133 D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~ 191 (282)
-.|..+..|...+.+-....|..|+.+|-.+.=.-..+... + ..-.|+.|.+.|+|+
T Consensus 26 ~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l-~-~~yp~l~i~g~~~g~ 82 (171)
T cd06533 26 PERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERL-R-ARYPGLKIVGYHHGY 82 (171)
T ss_pred CcccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHH-H-HHCCCcEEEEecCCC
Confidence 46889999999999999999999999987776665544221 1 223566676666655
No 121
>PRK05568 flavodoxin; Provisional
Probab=21.88 E-value=2.2e+02 Score=22.78 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=28.4
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHHCCCcEEEeccCChH
Q 023423 127 KVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDMGLATTP 165 (282)
Q Consensus 127 ~VvVG~D~R~-sS~~la~ala~gL~s~Gv~V~dlG~~pTP 165 (282)
+|+|-|++.. +.+.+++++++++.+.|++|..+-+.-++
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~ 42 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEAS 42 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4666666654 68899999999999999876555444333
No 122
>PRK09273 hypothetical protein; Provisional
Probab=21.40 E-value=2.9e+02 Score=25.02 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHCCCcEEEecc
Q 023423 139 PSLSVAVFAGLARAGCLVFDMGL 161 (282)
Q Consensus 139 ~~la~ala~gL~s~Gv~V~dlG~ 161 (282)
..+.+.+.+-|...|.+|+|+|.
T Consensus 16 ~~i~~~L~~~L~~~G~eV~D~G~ 38 (211)
T PRK09273 16 AIIYEALKKVADPKGHEVFNYGM 38 (211)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCC
Confidence 34666777777777777777775
No 123
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=21.39 E-value=4.5e+02 Score=21.36 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCc
Q 023423 95 LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCL 155 (282)
Q Consensus 95 LTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~ 155 (282)
=|-+.++.+|..+|....+. | ...|+.=+-... -.---.+++.++.+.|++
T Consensus 63 ~n~~aA~~vG~~la~ra~~~-----g----i~~vvfDrgg~~-YhGrv~A~a~~aRe~Gl~ 113 (114)
T TIGR00060 63 GNKDAAKKVGKLVAERLKEK-----G----IKDVVFDRGGYK-YHGRVAALAEAAREAGLN 113 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHC-----C----CCEEEEeCCCCc-chHHHHHHHHHHHHhCCC
Confidence 35789999999999988764 3 356654432222 233456889999999975
No 124
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=21.35 E-value=1.5e+02 Score=26.84 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=29.8
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCcEEE
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~d 158 (282)
..|++++|.-..|+..+.-++..|...|++|..
T Consensus 155 ~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~v 187 (218)
T TIGR00646 155 EKIFICFDNDFAGKNAAANLEEILKKAGFITKV 187 (218)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEE
Confidence 579999999999999999999999999988653
No 125
>PRK08105 flavodoxin; Provisional
Probab=21.28 E-value=3.6e+02 Score=22.37 Aligned_cols=56 Identities=16% Similarity=0.069 Sum_probs=36.4
Q ss_pred eEEEEecCC-CChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccC
Q 023423 127 KVSLGKDPR-VSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASH 188 (282)
Q Consensus 127 ~VvVG~D~R-~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASH 188 (282)
+|.|-|-+. -+++.+|+.+++.|.+.|++|..+.+-. + ... ...+++.=|.||+++
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~---~--~~~-~~~~~~~vi~~~sT~ 59 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPE---L--SDW-QPYQDELVLVVTSTT 59 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhh---C--Cch-hcccCCeEEEEECCC
Confidence 344444443 4789999999999999999987664321 1 111 012356778888875
No 126
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=20.90 E-value=2.8e+02 Score=25.04 Aligned_cols=54 Identities=31% Similarity=0.379 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCcEE
Q 023423 95 LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVF 157 (282)
Q Consensus 95 LTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~ 157 (282)
+.+.. ...+.+++.++.+.. | .++|.|-+.....+..+.+.+.+.+.+.|.+|+
T Consensus 114 ~~~~~-~~~~~~~~~~~~~~~----g----~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv 167 (343)
T PF13458_consen 114 LSPSD-SQQAAALAEYLAKKL----G----AKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVV 167 (343)
T ss_dssp SS--H-HHHHHHHHHHHHHTT----T----TSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred Eeccc-cHHHHHHHHHHHHHc----C----CcEEEEEecCchhhhHHHHHHHHHHhhcCceec
Confidence 44444 345778888876532 2 256655555588899999999999999999986
No 127
>PRK05569 flavodoxin; Provisional
Probab=20.73 E-value=2.2e+02 Score=22.73 Aligned_cols=37 Identities=24% Similarity=0.054 Sum_probs=27.6
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHHCCCcEEEeccCC
Q 023423 127 KVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDMGLAT 163 (282)
Q Consensus 127 ~VvVG~D~R~-sS~~la~ala~gL~s~Gv~V~dlG~~p 163 (282)
+|+|-|.... +...+++++++++.+.|++|-...+..
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~ 40 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVAD 40 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCc
Confidence 4666676654 679999999999999998765444433
No 128
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=20.56 E-value=1.4e+02 Score=21.11 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=25.0
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCC
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~G 153 (282)
..|+|+.|.-..|+.++..+.+-|...|
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~~~~ 75 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLKPAG 75 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhhhhc
Confidence 4699999999999999999999887765
No 129
>PRK05309 30S ribosomal protein S11; Validated
Probab=20.26 E-value=5e+02 Score=21.40 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEe-ccCChH
Q 023423 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (282)
Q Consensus 93 ~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dl-G~~pTP 165 (282)
..-|+..+..+++.++..+.+. |. ..-.|.+ +- .++ -.+++..+|...|+.|..+ ..+|.|
T Consensus 55 rK~T~~Aa~~aa~~~~~~~~~~-----gi--~~v~v~i-kG---~G~-Gr~~air~L~~~glkI~~I~D~Tpip 116 (128)
T PRK05309 55 RKSTPYAAQVAAEDAAKKAKEH-----GM--KTVEVFV-KG---PGS-GRESAIRALQAAGLEVTSIKDVTPIP 116 (128)
T ss_pred ccCCHHHHHHHHHHHHHHHHHc-----CC--cEEEEEE-EC---CCC-cHHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 4789999999999999888764 31 1123444 21 222 3688888999999999988 566655
No 130
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=20.18 E-value=2.5e+02 Score=19.98 Aligned_cols=33 Identities=21% Similarity=0.078 Sum_probs=29.5
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCcEEE
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~d 158 (282)
.+|+|..|.-..+...++.+.+.+.+.|+.+..
T Consensus 44 ~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~~i 76 (79)
T cd01029 44 RTVILAFDNDEAGKKAAARALELLLALGGRVRV 76 (79)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 579999999999999999999999998887754
No 131
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=20.12 E-value=5.4e+02 Score=21.77 Aligned_cols=74 Identities=7% Similarity=0.064 Sum_probs=46.3
Q ss_pred eEEEE-ecCCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCC
Q 023423 127 KVSLG-KDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGL 205 (282)
Q Consensus 127 ~VvVG-~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l 205 (282)
.-++| +|.........+ +++-+.+.+-+++.+|+-.-=.=.|+... ......+|+++-- .-|.|+...-.-
T Consensus 73 l~i~g~~~g~~~~~~~~~-i~~~I~~~~pdiv~vglG~PkQE~~~~~~-~~~l~~~v~~~vG------~~~d~~aG~~~r 144 (171)
T cd06533 73 LKIVGYHHGYFGPEEEEE-IIERINASGADILFVGLGAPKQELWIARH-KDRLPVPVAIGVG------GSFDFLAGTVKR 144 (171)
T ss_pred cEEEEecCCCCChhhHHH-HHHHHHHcCCCEEEEECCCCHHHHHHHHH-HHHCCCCEEEEec------eeeEeccCCccc
Confidence 34567 788776555444 89999999999999987655555555542 2234567777641 225565544333
Q ss_pred ChH
Q 023423 206 TSP 208 (282)
Q Consensus 206 ~~~ 208 (282)
.+.
T Consensus 145 aP~ 147 (171)
T cd06533 145 APK 147 (171)
T ss_pred CcH
Confidence 343
Done!