Query 023423
Match_columns 282
No_of_seqs 157 out of 1380
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 06:32:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pdk_A Phosphoglucosamine muta 100.0 7.2E-40 2.5E-44 320.8 19.8 182 72-282 23-207 (469)
2 3i3w_A Phosphoglucosamine muta 100.0 1.1E-39 3.8E-44 317.4 20.3 182 72-282 2-185 (443)
3 2f7l_A 455AA long hypothetical 100.0 6.9E-40 2.3E-44 319.3 16.4 182 72-282 2-185 (455)
4 1wqa_A Phospho-sugar mutase; a 100.0 2.9E-39 1E-43 314.9 17.4 183 73-282 3-187 (455)
5 1p5d_X PMM, phosphomannomutase 100.0 2.7E-38 9.2E-43 308.7 19.0 174 72-282 11-185 (463)
6 3uw2_A Phosphoglucomutase/phos 100.0 3.9E-38 1.3E-42 309.7 18.2 177 71-281 24-206 (485)
7 1tuo_A Putative phosphomannomu 100.0 7E-38 2.4E-42 306.1 17.9 178 72-282 10-190 (464)
8 4hjh_A Phosphomannomutase; str 100.0 1.5E-36 5.1E-41 297.9 17.3 179 73-281 10-190 (481)
9 2z0f_A Putative phosphoglucomu 100.0 2.7E-36 9.4E-41 298.6 13.7 185 72-282 23-223 (524)
10 3na5_A Phosphoglucomutase; iso 100.0 5.2E-36 1.8E-40 299.7 14.1 183 74-281 64-264 (570)
11 1kfi_A Phosphoglucomutase 1; p 100.0 2.9E-34 9.9E-39 287.1 12.7 209 42-282 1-243 (572)
12 3pmg_A Alpha-D-glucose-1,6-bis 100.0 1.3E-33 4.3E-38 282.1 9.1 192 74-282 15-229 (561)
13 2dka_A Phosphoacetylglucosamin 99.7 1.6E-17 5.3E-22 165.2 8.8 69 70-209 19-88 (544)
14 2dka_A Phosphoacetylglucosamin 97.8 1.9E-05 6.6E-10 78.2 6.0 47 126-172 133-180 (544)
15 1o1x_A Ribose-5-phosphate isom 91.4 0.83 2.8E-05 38.1 8.2 60 126-187 13-79 (155)
16 2vvr_A Ribose-5-phosphate isom 90.0 0.87 3E-05 37.7 7.2 59 127-187 3-68 (149)
17 2vvp_A Ribose-5-phosphate isom 87.8 1 3.4E-05 37.8 6.1 59 127-187 5-71 (162)
18 3he8_A Ribose-5-phosphate isom 87.1 2 6.7E-05 35.5 7.5 58 127-186 2-66 (149)
19 3ph3_A Ribose-5-phosphate isom 86.0 2.4 8.1E-05 35.8 7.5 60 126-187 21-87 (169)
20 3s5p_A Ribose 5-phosphate isom 85.7 2.2 7.5E-05 35.9 7.1 60 126-187 22-88 (166)
21 2ppw_A Conserved domain protei 81.6 2.8 9.5E-05 36.7 6.3 61 126-187 4-77 (216)
22 4em8_A Ribose 5-phosphate isom 81.5 3.8 0.00013 33.8 6.7 60 126-187 8-73 (148)
23 3k7p_A Ribose 5-phosphate isom 76.1 5 0.00017 34.1 6.0 59 127-187 24-91 (179)
24 3sgw_A Ribose 5-phosphate isom 70.5 8.8 0.0003 32.7 6.2 59 127-187 31-99 (184)
25 3ono_A Ribose/galactose isomer 69.3 5.7 0.0002 34.6 4.9 58 126-186 4-75 (214)
26 2ehp_A AQ_1627 protein; putati 64.1 19 0.00066 28.0 6.4 55 94-159 19-73 (126)
27 3ezx_A MMCP 1, monomethylamine 59.1 74 0.0025 27.0 10.1 54 125-184 92-149 (215)
28 3l21_A DHDPS, dihydrodipicolin 58.0 30 0.001 31.1 7.8 92 55-159 25-116 (304)
29 3c5y_A Ribose/galactose isomer 55.2 12 0.00041 33.0 4.4 61 127-187 23-93 (231)
30 4dik_A Flavoprotein; TM0755, e 54.9 83 0.0028 29.4 10.6 53 99-159 247-300 (410)
31 3flu_A DHDPS, dihydrodipicolin 53.0 47 0.0016 29.6 8.2 94 53-159 15-108 (297)
32 3cpr_A Dihydrodipicolinate syn 52.8 68 0.0023 28.6 9.2 93 54-159 25-117 (304)
33 2wkj_A N-acetylneuraminate lya 51.7 45 0.0015 29.9 7.8 93 54-159 20-112 (303)
34 3si9_A DHDPS, dihydrodipicolin 51.6 42 0.0014 30.3 7.7 93 54-159 31-123 (315)
35 3tak_A DHDPS, dihydrodipicolin 50.6 42 0.0014 29.8 7.4 93 54-159 10-102 (291)
36 3qze_A DHDPS, dihydrodipicolin 50.4 44 0.0015 30.1 7.6 94 53-159 31-124 (314)
37 3na8_A Putative dihydrodipicol 50.3 39 0.0013 30.5 7.2 94 53-159 32-125 (315)
38 3daq_A DHDPS, dihydrodipicolin 49.6 46 0.0016 29.6 7.5 93 53-159 11-103 (292)
39 1xky_A Dihydrodipicolinate syn 49.1 58 0.002 29.1 8.1 92 55-159 22-113 (301)
40 3e96_A Dihydrodipicolinate syn 45.9 44 0.0015 30.1 6.8 92 54-159 20-112 (316)
41 3a5f_A Dihydrodipicolinate syn 45.6 62 0.0021 28.7 7.7 92 54-159 11-102 (291)
42 4dpp_A DHDPS 2, dihydrodipicol 45.2 76 0.0026 29.4 8.5 93 54-159 68-160 (360)
43 3m5v_A DHDPS, dihydrodipicolin 45.1 70 0.0024 28.5 8.0 93 54-159 17-109 (301)
44 3s5o_A 4-hydroxy-2-oxoglutarat 45.1 48 0.0016 29.7 6.9 92 55-159 24-115 (307)
45 2ehh_A DHDPS, dihydrodipicolin 45.0 72 0.0025 28.3 8.1 92 54-159 10-101 (294)
46 2vqe_K 30S ribosomal protein S 44.9 77 0.0026 25.1 7.3 60 94-165 55-115 (129)
47 2v9d_A YAGE; dihydrodipicolini 44.4 54 0.0018 30.0 7.3 93 54-159 40-132 (343)
48 3d0c_A Dihydrodipicolinate syn 42.1 69 0.0024 28.8 7.5 92 54-159 20-112 (314)
49 2r8w_A AGR_C_1641P; APC7498, d 41.5 57 0.0019 29.7 6.9 95 52-159 41-135 (332)
50 3dz1_A Dihydrodipicolinate syn 41.3 59 0.002 29.2 6.9 93 53-159 16-108 (313)
51 2yxg_A DHDPS, dihydrodipicolin 40.7 71 0.0024 28.2 7.3 92 54-159 10-101 (289)
52 3fni_A Putative diflavin flavo 40.7 75 0.0026 25.2 6.8 38 126-163 5-43 (159)
53 3b4u_A Dihydrodipicolinate syn 40.6 45 0.0015 29.7 6.0 92 55-159 13-104 (294)
54 1o5k_A DHDPS, dihydrodipicolin 39.2 81 0.0028 28.2 7.5 95 51-159 19-113 (306)
55 3qfe_A Putative dihydrodipicol 38.4 65 0.0022 29.0 6.7 92 55-159 20-112 (318)
56 3fkr_A L-2-keto-3-deoxyarabona 38.1 81 0.0028 28.2 7.3 93 54-159 17-109 (309)
57 2ojp_A DHDPS, dihydrodipicolin 37.5 53 0.0018 29.1 5.9 93 54-159 10-102 (292)
58 2yxb_A Coenzyme B12-dependent 36.7 49 0.0017 26.7 5.1 57 125-187 18-78 (161)
59 1qys_A TOP7; alpha-beta, novel 36.6 53 0.0018 24.2 4.6 55 96-159 25-81 (106)
60 1f6k_A N-acetylneuraminate lya 35.8 71 0.0024 28.3 6.5 93 54-159 12-105 (293)
61 3eb2_A Putative dihydrodipicol 33.7 44 0.0015 29.8 4.8 93 54-159 13-105 (300)
62 3u5c_O RP59A, 40S ribosomal pr 32.8 52 0.0018 26.5 4.5 65 93-165 53-122 (137)
63 3h5d_A DHDPS, dihydrodipicolin 31.7 1E+02 0.0035 27.7 6.8 93 54-159 16-109 (311)
64 2vc6_A MOSA, dihydrodipicolina 29.1 1.2E+02 0.0041 26.8 6.8 92 54-159 10-101 (292)
65 2rfg_A Dihydrodipicolinate syn 28.4 1E+02 0.0035 27.4 6.2 92 54-159 10-101 (297)
66 3tnj_A Universal stress protei 28.2 69 0.0023 24.1 4.5 41 126-166 7-47 (150)
67 2i2x_B MTAC, methyltransferase 27.8 94 0.0032 26.9 5.8 86 94-188 92-184 (258)
68 1y80_A Predicted cobalamin bin 27.3 1.1E+02 0.0039 25.2 6.0 56 126-187 89-148 (210)
69 3r8n_K 30S ribosomal protein S 27.0 1.4E+02 0.0049 23.1 6.0 60 94-165 45-105 (117)
70 3hly_A Flavodoxin-like domain; 26.1 1.5E+02 0.005 23.4 6.2 32 128-159 3-35 (161)
71 1q77_A Hypothetical protein AQ 25.9 68 0.0023 23.8 4.0 40 126-165 5-46 (138)
72 1ccw_A Protein (glutamate muta 25.1 38 0.0013 26.5 2.4 56 126-187 4-63 (137)
73 1jmv_A USPA, universal stress 24.1 90 0.0031 23.1 4.4 37 126-162 3-39 (141)
74 3hgm_A Universal stress protei 24.0 51 0.0017 24.7 2.9 43 126-168 3-45 (147)
75 2nuw_A 2-keto-3-deoxygluconate 23.9 1.1E+02 0.0039 26.9 5.6 90 54-159 8-97 (288)
76 2h54_A Caspase-1; allosteric s 23.6 2.3E+02 0.0078 23.3 7.1 73 127-203 46-129 (178)
77 2r91_A 2-keto-3-deoxy-(6-phosp 23.5 1.8E+02 0.0062 25.4 6.9 89 54-159 8-96 (286)
78 3j20_M 30S ribosomal protein S 23.1 2.4E+02 0.0081 22.6 6.8 64 93-165 53-122 (137)
79 2hmc_A AGR_L_411P, dihydrodipi 21.4 2.2E+02 0.0074 26.0 7.1 91 53-159 34-124 (344)
80 3s3t_A Nucleotide-binding prot 20.8 54 0.0018 24.5 2.5 39 126-164 6-44 (146)
81 5nul_A Flavodoxin; electron tr 20.3 1.6E+02 0.0054 22.0 5.2 31 129-159 2-33 (138)
82 3fdx_A Putative filament prote 20.2 76 0.0026 23.6 3.2 41 126-166 2-44 (143)
83 1e5d_A Rubredoxin\:oxygen oxid 20.1 3.6E+02 0.012 23.9 8.3 55 98-161 234-289 (402)
No 1
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=100.00 E-value=7.2e-40 Score=320.85 Aligned_cols=182 Identities=26% Similarity=0.356 Sum_probs=152.1
Q ss_pred cccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 023423 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (282)
Q Consensus 72 ~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s 151 (282)
+++|+.+||||++++ +||++++.++|+|||+++.+.. ...+|+||||+|.+|++|++++++||++
T Consensus 23 ~~~FGt~GiRG~~~~-------~lt~~~v~~~g~a~~~~l~~~~--------~~~~VvIG~D~R~ss~~~~~a~a~gl~s 87 (469)
T 3pdk_A 23 GKYFGTDGVRGVANK-------ELTPELAFKIGRFGGYVLTKDT--------DRPKVIIGRDTRISGHMLEGALVAGLLS 87 (469)
T ss_dssp CCSCBTTBEEEEBTT-------TBCHHHHHHHHHHHHHHHHTTC--------SSCEEEEEECSCTTHHHHHHHHHHHHHT
T ss_pred ccccCCCCeeeecCC-------CCCHHHHHHHHHHHHHHHHhhC--------CCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 478888889999974 8999999999999999997631 1368999999999999999999999999
Q ss_pred CCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhh--hhcccccc
Q 023423 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARK--FANRLTKV 228 (282)
Q Consensus 152 ~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~--~~~~~~~~ 228 (282)
+|++|+++|++|||+++|+++ ++++++||||||||||++||||||++++|. +.++..++|++.+.+. .+++...
T Consensus 88 ~Gi~V~~~g~~pTP~l~fav~--~~~a~~GImITASHNP~~~NGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~- 164 (469)
T 3pdk_A 88 TGAEVMRLGVISTPGVAYLTK--ALDAQAGVMISASHNPVQDNGIKFFGSDGFKLTDEQEAEIEALLDKEVDELPRPTG- 164 (469)
T ss_dssp TTCEEEEEEECCHHHHHHHHH--HHTCSEEEEECCTTSCTTEEEEEEEETTSSBCCHHHHHHHHHHHHSSSCCSCCCCG-
T ss_pred CCCEEEEeCCCChHHHHHHHH--hcCCCeEEEEEeCCCcchhCcEEEecCCCcCCCHHHHHHHHHHHhccccccCcccc-
Confidence 999999999999999999998 789999999999999999999999999998 6666677777766542 2222211
Q ss_pred ccccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 229 STVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 229 ~~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
...|.+ ....|+.+.|+++|++.++. .++++||||||+||+++
T Consensus 165 ~~~g~~-~~~~d~~~~Y~~~l~~~~~~----------~~~~lkivvD~~nG~~~ 207 (469)
T 3pdk_A 165 TNLGQV-SDYFEGGQKYLQYIKQTVEE----------DFSGLHIALDCAHGATS 207 (469)
T ss_dssp GGSCCE-EECTHHHHHHHHHHHTTCSS----------CCTTCEEEEECTTSTTT
T ss_pred ccCccE-EEcccHHHHHHHHHHHhcCc----------ccCCCEEEEECCCchHH
Confidence 124542 12468899999999998862 35789999999999975
No 2
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=100.00 E-value=1.1e-39 Score=317.36 Aligned_cols=182 Identities=21% Similarity=0.268 Sum_probs=150.1
Q ss_pred cccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCC-eEEEEecCCCChHHHHHHHHHHHH
Q 023423 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDV-KVSLGKDPRVSGPSLSVAVFAGLA 150 (282)
Q Consensus 72 ~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~-~VvVG~D~R~sS~~la~ala~gL~ 150 (282)
+++|+.+||||+++.| +||++++.++|+|||+++.+. + .. +|+||||+|.+|++|++++++||+
T Consensus 2 ~~~FGt~GiRG~~~~g------~lt~~~v~~~g~a~~~~l~~~-----~----~~~~VvVG~D~R~ss~~l~~a~~~gl~ 66 (443)
T 3i3w_A 2 AKYFGTDGIRGEVANS------TITVEFTQKLGNAVGSLINQK-----N----YPKFVIVGQDTRSSGGFLKFALVSGLN 66 (443)
T ss_dssp -CCCCSSSSEEEBSSS------SBSHHHHHHHHHHHHHHHHHT-----T----CCSEEEEEECSCTTHHHHHHHHHHHHH
T ss_pred CcccCCCCeeEEeCCC------CCCHHHHHHHHHHHHHHHHhc-----C----CCCeEEEEeCCCcCHHHHHHHHHHHHH
Confidence 4789888999999843 799999999999999999864 1 24 899999999999999999999999
Q ss_pred HCCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhccccccc
Q 023423 151 RAGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFANRLTKVS 229 (282)
Q Consensus 151 s~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~~~~~~~ 229 (282)
++|++|+++|++|||+++|+++ ++++++||||||||||++||||||++++|. +.++..++|++.+.+ .+.+... .
T Consensus 67 s~G~~V~~~g~~pTP~~~~av~--~~~a~~GImITASHNP~~~NGiK~~~~~G~~l~~~~~~~Ie~~~~~-~~~~~~~-~ 142 (443)
T 3i3w_A 67 AAGIDVLDLGVVPTPVVAFMTV--KHRAAAGFVITASHNKFTDNGIKLFSSNGFKLDDALEEEVEDMIDG-DFIYQPQ-F 142 (443)
T ss_dssp HHTCEEEEEEECCHHHHHHHHH--HTTCSEEEEECCTTSCTTEEEEEEEETTSCBCCHHHHHHHHHHHTS-CCCCCTT-S
T ss_pred HCCCeEEEeCCCCHHHHHHHHH--hcCCCeEEEEEECCCCchhCeEEEEcCCCCcCCHHHHHHHHHHHhc-ccccccc-c
Confidence 9999999999999999999998 789999999999999999999999999998 555566667666543 2222110 1
Q ss_pred cccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 230 TVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 230 ~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
..|.+ ....|+.+.|+++|++.++.. +++++ ||||||+||+++
T Consensus 143 ~~g~~-~~~~d~~~~Y~~~l~~~~~~~--------i~~~~-kivvD~~nG~~~ 185 (443)
T 3i3w_A 143 KFGSY-KILANAIDEYIESIYSRFAKF--------VNYKG-KVVVDCAHGAAS 185 (443)
T ss_dssp CCCCE-EECTTTTHHHHHHHHHHHTTT--------CCCCS-EEEEECTTSTTT
T ss_pred cCccE-EEChhHHHHHHHHHHHhCchh--------hccCC-eEEEECCCChHH
Confidence 24442 123478999999999998732 35678 999999999975
No 3
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.9e-40 Score=319.30 Aligned_cols=182 Identities=26% Similarity=0.340 Sum_probs=153.3
Q ss_pred cccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 023423 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (282)
Q Consensus 72 ~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s 151 (282)
+++|+.+||||+++ .+||++++.++|+|||+++.++ .+|+||||+|.+|++|++++++||++
T Consensus 2 ~~~Fgt~GiRG~~~-------~~lt~~~v~~~~~a~~~~l~~~-----------~~VvIG~D~R~ss~~~~~a~a~gl~~ 63 (455)
T 2f7l_A 2 GKLFGTDGVRGIVN-------KELTPELVLKLSKAIGTFFGKN-----------SKILVGRDVRAGGDMLVKIVEGGLLS 63 (455)
T ss_dssp CSSCCSSSEEEEBT-------TTBCHHHHHHHHHHHHHHHCTT-----------CEEEEEECSCTTHHHHHHHHHHHHHH
T ss_pred CCcccCCCeeeecC-------CCcCHHHHHHHHHHHHHHHccC-----------CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 36888889999997 3899999999999999999642 58999999999999999999999999
Q ss_pred CCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhcccccccc
Q 023423 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFANRLTKVST 230 (282)
Q Consensus 152 ~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~~~~~~~~ 230 (282)
+|++|+++|++|||+++|+++ +++|++||||||||||++||||||++++|. +.+++.++|++.+.+..+.+... ..
T Consensus 64 ~G~~V~~~g~~pTP~~~~av~--~~~~~~GImITASHNP~~~NGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~-~~ 140 (455)
T 2f7l_A 64 VGVEVYDGGMAPTPALQYAVK--TLGYDGGVVITASHNPAPYNGIKVVDKDGIEIRREKENEIEDLFFTERFNTIEW-SS 140 (455)
T ss_dssp TTCEEEEEEECCHHHHHHHHH--HHCCSEEEEECCTTSCTTEEEEEEECTTSSBCCHHHHHHHHHHHHHTCCCCCCG-GG
T ss_pred CCCcEEEcCCCCcHHHHHHHH--hcCCCeEEEEEcCCCChHHCEEEEECCCCCCCCHHHHHHHHHHHhcCCCCcCch-hc
Confidence 999999999999999999998 789999999999999999999999999998 66777888887775433332210 12
Q ss_pred cc-CCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 231 VL-RNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 231 ~g-~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
.| .+ ....|+.+.|+++|++.++.+. ++++++|||+||+||+++
T Consensus 141 ~g~~~-~~~~~~~~~Y~~~l~~~~~~~~-------i~~~~lkivvd~~~G~~~ 185 (455)
T 2f7l_A 141 LTTEV-KREDRVISTYVNGILSHVDIEK-------IKKKNYKVLIDPANSVGA 185 (455)
T ss_dssp CCCCC-EECCCHHHHHHHHHHTTSCHHH-------HHHHCCEEEEECTTTGGG
T ss_pred CCcee-ecccchHHHHHHHHHhhcChhh-------cccCCCEEEEECCCchHH
Confidence 45 43 2356899999999999887543 234689999999999874
No 4
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.9e-39 Score=314.86 Aligned_cols=183 Identities=28% Similarity=0.331 Sum_probs=153.7
Q ss_pred ccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 023423 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (282)
Q Consensus 73 ~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~ 152 (282)
++|+.+||||+++. +||++++.++|+|||+++.+.. ....+|+||||+|.+|++|++++++||+++
T Consensus 3 ~~Fgt~GiRG~~~~-------~lt~~~v~~~~~a~~~~l~~~~-------~~~~~VvIG~D~R~ss~~l~~a~~~gl~~~ 68 (455)
T 1wqa_A 3 KLFGTFGVRGIANE-------KITPEFAMKIGMAFGTLLKREG-------RKKPLVVVGRDTRVSGEMLKEALISGLLSV 68 (455)
T ss_dssp TTCBTTBEEEEBTT-------TBCHHHHHHHHHHHHHHHHHTT-------CSSCEEEEEECSCTTHHHHHHHHHHHHHHT
T ss_pred cccCCCceeeecCC-------CcCHHHHHHHHHHHHHHHHhcC-------CCCCeEEEEeCCCcCHHHHHHHHHHHHHHc
Confidence 57888899999974 7999999999999999998641 113579999999999999999999999999
Q ss_pred CCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhccc-ccccc
Q 023423 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFANRL-TKVST 230 (282)
Q Consensus 153 Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~~~-~~~~~ 230 (282)
|++|+++|++|||+++|+++ ++++++||||||||||++||||||++++|. +.+++.++|++.+.+..+.+. +. .
T Consensus 69 G~~V~~~g~~pTP~l~~~v~--~~~~~~GimITASHNP~~~NGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~--~ 144 (455)
T 1wqa_A 69 GCDVIDVGIAPTPAVQWATK--HFNADGGAVITASHNPPEYNGIKLLEPNGMGLKKEREAIVEELFFKEDFDRAKWY--E 144 (455)
T ss_dssp TCEEEEEEECCHHHHHHHHH--HTTCSEEEEECCTTSCTTEEEEEEECTTSSBCCHHHHHHHHHHHHHTCCCCCCGG--G
T ss_pred CCeEEEeCCCChHHHHHHHH--hcCCCEEEEEEeCCCChHHCeEEEEcCCCCcCCHHHHHHHHHHHhcCCcccCCcc--C
Confidence 99999999999999999998 789999999999999999999999999998 677777788877654333221 21 2
Q ss_pred ccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 231 VLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 231 ~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
.|.+ ...|+.+.|+++|++.++.+. ++++++|||+||+||+++
T Consensus 145 ~g~~--~~~~~~~~Y~~~l~~~~~~~~-------~~~~~lkivvd~~nG~~~ 187 (455)
T 1wqa_A 145 IGEV--RREDIIKPYIEAIKSKVDVEA-------IKKRKPFVVVDTSNGAGS 187 (455)
T ss_dssp CCCE--EECCCHHHHHHHHHTTSCHHH-------HHHHCCEEEEECTTSGGG
T ss_pred Ccce--eccchHHHHHHHHHhhCChhh-------cccCCCEEEEECCCccHH
Confidence 4543 456899999999999887542 234689999999999974
No 5
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=100.00 E-value=2.7e-38 Score=308.67 Aligned_cols=174 Identities=27% Similarity=0.399 Sum_probs=149.6
Q ss_pred cccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 023423 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (282)
Q Consensus 72 ~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s 151 (282)
+++|+.+||||+++. +||++++.++|+|||+++.+. + ..+|+||||+|.+|++|++++++||++
T Consensus 11 ~~~Fgt~GiRG~~~~-------~~t~~~~~~i~~a~~~~l~~~-----~----~~~VvVG~D~R~ss~~l~~a~~~gl~a 74 (463)
T 1p5d_X 11 ASIFRAYDIRGVVGD-------TLTAETAYWIGRAIGSESLAR-----G----EPCVAVGRDGRLSGPELVKQLIQGLVD 74 (463)
T ss_dssp GGGBCSSSEEEEBTT-------TBCHHHHHHHHHHHHHHHHHT-----T----CCEEEEEECSCTTHHHHHHHHHHHHHT
T ss_pred ccccCCCCcceeCCC-------CCCHHHHHHHHHHHHHHHHHc-----C----CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 678888889999974 899999999999999999864 1 258999999999999999999999999
Q ss_pred CCCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhcccccccc
Q 023423 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFANRLTKVST 230 (282)
Q Consensus 152 ~Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~~~~~~~~ 230 (282)
+|++|+++|++|||+++|+++ ++++++||||||||||++||||||++ +|. +.++.+++|++.+.+..+.. .
T Consensus 75 ~G~~V~~~g~~pTP~l~~av~--~~~~~~GImITASHNP~~~NGiK~~~-~G~~i~~~~~~~I~~~~~~~~~~~-----~ 146 (463)
T 1p5d_X 75 CGCQVSDVGMVPTPVLYYAAN--VLEGKSGVMLTGSHNPPDYNGFKIVV-AGETLANEQIQALRERIEKNDLAS-----G 146 (463)
T ss_dssp BTCEEEEEEECCHHHHHHHHH--HSSCSEEEEECCTTSCTTEEEEEEEE-TTEECCTHHHHHHHHHHHHTCCCC-----B
T ss_pred CCCEEEEeCCCChHHHHHHHH--hcCCCeEEEEccCCCCcccceEEEEC-CCccCCHHHHHHHHHHHhcCCccc-----C
Confidence 999999999999999999998 78999999999999999999999999 886 77878888887765422111 1
Q ss_pred ccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 231 VLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 231 ~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
.|.+ ...|+.+.|+++|++.++. . +++||||||+||+++
T Consensus 147 ~g~~--~~~d~~~~Y~~~l~~~~~~----------~-~~lkivvD~~nG~~~ 185 (463)
T 1p5d_X 147 VGSV--EQVDILPRYFKQIRDDIAM----------A-KPMKVVVDCGNGVAG 185 (463)
T ss_dssp CCEE--EECCCHHHHHHHHHTTCCC----------S-SCEEEEEECTTSGGG
T ss_pred CCce--ecCChHHHHHHHHHhhhcc----------c-CCCEEEEECCCCcHH
Confidence 3432 4558999999999998862 1 579999999999974
No 6
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=100.00 E-value=3.9e-38 Score=309.73 Aligned_cols=177 Identities=24% Similarity=0.328 Sum_probs=149.1
Q ss_pred ccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHH
Q 023423 71 IRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLA 150 (282)
Q Consensus 71 ~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~ 150 (282)
.+++|+.+||||+++ ++||+++++++|+|||+++.+. + ..+|+||||+|.+|++|+++++++|+
T Consensus 24 ~~~~Fgt~GiRG~~~-------~~lt~~~~~~ig~A~~~~l~~~-----~----~~~VvVG~D~R~ss~~~~~a~a~gl~ 87 (485)
T 3uw2_A 24 SQSIFKAYDIRGVIG-------KTLDADVARSIGRAFGSEVRAQ-----G----GDAVVVARDGRLSGPELVGALADGLR 87 (485)
T ss_dssp CGGGBCSSSEEEEBT-------TTBCHHHHHHHHHHHHHHHHHT-----T----CCEEEEEECSCTTHHHHHHHHHHHHH
T ss_pred cccccccCCEEEEeC-------CCCCHHHHHHHHHHHHHHHHHc-----C----CCEEEEEECCCcCHHHHHHHHHHHHH
Confidence 468999999999997 4899999999999999999764 1 36899999999999999999999999
Q ss_pred HCCCcEEEeccCChHHHHHHhhcC------CCCCCeEEEEeccCCCCCCceEEEeeCCCCCChHHHHHHHHHHHhhhhcc
Q 023423 151 RAGCLVFDMGLATTPACFMSTLLP------PFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSPVVEDICGEAARKFANR 224 (282)
Q Consensus 151 s~Gv~V~dlG~~pTP~l~fav~~~------~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~~i~~i~~~~~~~~~~~ 224 (282)
++|++|+++|++|||+++|+++.. ++++++||||||||||++||||||+..++.+.++++++|++.+.+..+.+
T Consensus 88 a~Gi~V~~~g~~pTP~l~~av~~~~~~~~~~~~~~~GImITASHNP~~~NGiK~~~~G~~i~~~~~~~I~~~~~~~~~~~ 167 (485)
T 3uw2_A 88 AAGVDVVDVGMVPTPVGYFAASVPLALSGGERRVDSCIVVTGSHNPPDYNGFKMVLRGAAIYGDQIQGLYKRIVDARFET 167 (485)
T ss_dssp HTTCEEEEEEECCHHHHHHHTTSCEEETTEEECCCCEEEECCTTSCTTEEEEEEEETTEECCTHHHHHHHHHHHTTCCCC
T ss_pred HCCCEEEEeCCCChHHHHHHHhccccccccccCCCeEEEEEeCCCCcccceEEEecCCCCCCHHHHHHHHHHHhcCCccc
Confidence 999999999999999999998611 45899999999999999999999998433488888888887765432221
Q ss_pred ccccccccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 225 LTKVSTVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 225 ~~~~~~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
..|. +...|+.+.|+++|.+.++. .+++|||+||+||++
T Consensus 168 -----~~g~--~~~~d~~~~Yi~~l~~~i~~-----------~~~lkIvvD~~~Ga~ 206 (485)
T 3uw2_A 168 -----GSGS--YEQYDVADQYVERIVGDIKL-----------TRPLKLVVDAGNGVA 206 (485)
T ss_dssp -----CCCC--EEECCCHHHHHHHHHTTCCC-----------SSCCCEEEECTTSTH
T ss_pred -----CCce--EEecchHHHHHHHHHHhcCc-----------ccCCEEEEEcCCCcH
Confidence 1343 34568999999999998862 257999999999986
No 7
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=100.00 E-value=7e-38 Score=306.05 Aligned_cols=178 Identities=20% Similarity=0.217 Sum_probs=147.9
Q ss_pred ccccccc-ceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHH
Q 023423 72 RRLQNGS-DVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLA 150 (282)
Q Consensus 72 ~~Lf~gt-dIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~ 150 (282)
++|.||| ||||+++ .+||++++.++|+|||+++.+. + ..+|+||||+|.+|++|++++++||+
T Consensus 10 ~~l~FGt~GiRG~~~-------~~lt~~~v~~~~~a~~~~l~~~-----~----~~~VvVG~D~R~ss~~~~~a~a~gl~ 73 (464)
T 1tuo_A 10 APIRFGTEGFRGVIA-------REFTFATLHRLAEAYGRHLLER-----G----GGLVVVGHDTRFLADAFARALSGHLA 73 (464)
T ss_dssp CCCCCCSSSEEEEBT-------TTBCHHHHHHHHHHHHHHHHHT-----T----CCEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred CCccccCCCcceecC-------CCcCHHHHHHHHHHHHHHHHHh-----C----CCeEEEeeCCCCCHHHHHHHHHHHHH
Confidence 3455555 5999997 3899999999999999999864 1 25899999999999999999999999
Q ss_pred HCCCcEE-EeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCC-CChHHHHHHHHHHHhhhhcccccc
Q 023423 151 RAGCLVF-DMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGG-LTSPVVEDICGEAARKFANRLTKV 228 (282)
Q Consensus 151 s~Gv~V~-dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~-l~~~~i~~i~~~~~~~~~~~~~~~ 228 (282)
++|++|+ ++|++|||+++|+++ ++++++||||||||||++||||||++++|. +.++..++|++.+. + . .+
T Consensus 74 ~~G~~V~~~~g~~pTP~~~~av~--~~~~~~GImITASHNP~~~NGiK~~~~~G~~i~~~~~~~Ie~~~~-~--~-~~-- 145 (464)
T 1tuo_A 74 GMGLKVVLLKGPVPTPLLSFAVR--HLKAAGGAMLTASHNPPQYLGVKFKDATGGPIAQEEAKAIEALVP-E--E-AR-- 145 (464)
T ss_dssp HHTCEEEEESSSCCHHHHHHHHH--HTTCSEEEEECCTTSCTTEEEEEEEETTTEECCHHHHHHHHHTCC-S--C-CC--
T ss_pred HCCCeEEEcCCCCCHHHHHHHHH--HhCCCceEEEcCCCCCchHCCEEEEcCCCCcCChHHHHHHHHHhc-C--C-cc--
Confidence 9999996 679999999999998 789999999999999999999999999998 66666666665543 1 1 12
Q ss_pred ccccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 229 STVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 229 ~~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
...|.+ ...|+.+.|+++|++.++.+. ++.+++|||+||+||+++
T Consensus 146 ~~~g~~--~~~d~~~~Y~~~l~~~~~~~~-------i~~~~lkivvd~~nG~~~ 190 (464)
T 1tuo_A 146 ALEGAY--ETLDLREAYFEALKAHLDLKA-------LSGFSGVLYHDSMGGAGA 190 (464)
T ss_dssp CCCCCC--EEECCHHHHHHHHHTTSCHHH-------HTTCCSCEEEECTTSTTT
T ss_pred ccCCce--EEcCcHHHHHHHHhhhcChhh-------ccccCCEEEEECCCCcHH
Confidence 124543 456899999999999987653 234689999999999975
No 8
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=100.00 E-value=1.5e-36 Score=297.88 Aligned_cols=179 Identities=25% Similarity=0.327 Sum_probs=144.7
Q ss_pred ccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 023423 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (282)
Q Consensus 73 ~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~ 152 (282)
..|+.+||||++ . +||+++|.++|+|||++|.+.. ......+|+||||+|.+|++|+++++++|+++
T Consensus 10 ~~FGT~GiRG~~-~-------~lt~~~v~~~~~a~a~~l~~~~-----~~~~~~~VvVG~D~R~ss~~~~~a~~~gl~a~ 76 (481)
T 4hjh_A 10 LKFGTSGLRGLA-V-------ELNGLPAYAYTMAFVQMLAAKG-----QLQKGDKVFVGRDLRPSSPDIAALAMGAIEDA 76 (481)
T ss_dssp CEECSSSEEEEH-H-------HHTTHHHHHHHHHHHHHHHHTT-----SCCTTCEEEEEECSSTTHHHHHHHHHHHHHHT
T ss_pred CcccCCCcceec-C-------CCCHHHHHHHHHHHHHHHHhhc-----cccCCCeEEEeecCCcCHHHHHHHHHHHHHHC
Confidence 445555599999 3 7999999999999999997641 00123689999999999999999999999999
Q ss_pred CCcEEEeccCChHHHHHHhhcCCCCCCeEEEEeccCCCCCCceEEEeeCCCCCChHHHHHHHHHHHhhhhcccccc-ccc
Q 023423 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTKKGGLTSPVVEDICGEAARKFANRLTKV-STV 231 (282)
Q Consensus 153 Gv~V~dlG~~pTP~l~fav~~~~~~a~gGImITASHNP~~~NGiK~~~~~G~l~~~~i~~i~~~~~~~~~~~~~~~-~~~ 231 (282)
|++|+++|++|||+++|+++ ++++ +||||||||||++||||||++++|.+.+++.++|++.+.+ +.+.+.. ...
T Consensus 77 Gi~V~~~g~~pTP~l~fav~--~~~~-~GImITASHNP~~~NGiK~~~~~G~~~~~~e~~I~~~~~~--~~~~~~~~~~~ 151 (481)
T 4hjh_A 77 GFTPVNCGVLPTPALSYYAM--GAKA-PSIMVTGSHIPDDRNGLKFYRRDGEIDKDDEAAISAAYRK--LPAILAARKHV 151 (481)
T ss_dssp TCEEEEEEECCHHHHHHHHH--HTTC-CEEEECCTTSCTTEEEEEEEETTEECCHHHHHHHHHHHHT--CCC-CCCCCCC
T ss_pred CCEEEEeCCcCcHHHHHHHH--hcCC-ceEEEecCCCCCCCCCEEEeCCCCCCCCHHHHHHHHHHhh--hcccccccccc
Confidence 99999999999999999998 6777 7999999999999999999999998887777777766542 1111110 013
Q ss_pred cCCCCcccchHHH-HHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 232 LRNPPTRVDFMST-YAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 232 g~~~~~~~d~~~~-Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
|. ...|+.+. |++++.+.++.+ .++++||||||+||++
T Consensus 152 g~---~~~d~~~~~Yi~~~~~~~~~~---------~~~~lkivvd~~~Ga~ 190 (481)
T 4hjh_A 152 GS---TETDAALQAYADRYAGFLGKG---------SLNGLRVGVYQHSSVA 190 (481)
T ss_dssp CS---CCCCHHHHHHHHHHHHHHCTT---------TTTTCEEEEEEETCTT
T ss_pred Cc---ccccccHHHHHHHHHHhcCcc---------cccCCEEEEECCCChH
Confidence 32 24678899 999999999743 3468999999999986
No 9
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics; 2.52A {Thermus thermophilus}
Probab=100.00 E-value=2.7e-36 Score=298.56 Aligned_cols=185 Identities=19% Similarity=0.214 Sum_probs=142.0
Q ss_pred cccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 023423 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (282)
Q Consensus 72 ~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s 151 (282)
+.+|+.+||||++.. .+||++++.++|+|||+++.+. + ...+|+||||+|.+|++|+++++++|++
T Consensus 23 ~~~FGT~GiRG~~~~------~~lt~~~v~~i~~a~~~~l~~~-----~---~~~~VvIG~D~R~~S~~~~~~~~~gl~a 88 (524)
T 2z0f_A 23 GVRFGTSGHRGSSLK------ATFTEAHVLAIAQAIAELRPSF-----G---ATGPLFLAKDTHALSEPAWATALSVFAA 88 (524)
T ss_dssp SCCEETTEEEECGGG------TSSCHHHHHHHHHHHHHHTTTT-----T---CCSCEEEEECSCTTHHHHHHHHHHHHHH
T ss_pred cCcccCccccCCccc------CCCCHHHHHHHHHHHHHHHHHh-----C---CCCeEEEEeCCCcchHHHHHHHHHHHHH
Confidence 456666679997521 4899999999999999998753 2 1246999999999999999999999999
Q ss_pred CCCcEEEe---ccCChHHHHHHhhcCCCC-----CCeEEEEeccCCCCCCceEEEeeCCCCCChHHHH-HHHHHHHh---
Q 023423 152 AGCLVFDM---GLATTPACFMSTLLPPFA-----YDASIMMTASHLPYTRNGLKFFTKKGGLTSPVVE-DICGEAAR--- 219 (282)
Q Consensus 152 ~Gv~V~dl---G~~pTP~l~fav~~~~~~-----a~gGImITASHNP~~~NGiK~~~~~G~l~~~~i~-~i~~~~~~--- 219 (282)
+|++|+++ |++|||+++|+++ +++ +++||||||||||++||||||++++|...+++++ +|++.+..
T Consensus 89 ~Gi~V~~~~~~G~~pTP~l~~av~--~~~~~~~~a~~GImITASHNP~~~NGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~ 166 (524)
T 2z0f_A 89 HGIEVRVEADGDYTPTPLVSLAIL--EHNAHHEAKADGVLLTPSHNPPEDGGFKYNPPTGGPANARITRAIEERANALLQ 166 (524)
T ss_dssp TTCCEEEESSSSCCCHHHHHHHHH--HHHTTCSSCCEEEEECC--CCTTCEEEEEECTTSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCccCcHHHHHHHH--HhCCCccccceEEEEcCCCCCchhCCEEEECCCCCcCCHHHHHHHHHHHHhhcc
Confidence 99999985 8999999999998 677 6999999999999999999999999985555544 55544321
Q ss_pred h---hhcc-ccccccccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 220 K---FANR-LTKVSTVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 220 ~---~~~~-~~~~~~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
. .+.+ .+. ...+. ....|+.+.|+++|++.++.+. ++.+++|||+||+||+++
T Consensus 167 ~~~~~~~~~~~~-~~~~~--~~~~d~~~~Y~~~l~~~~~~~~-------i~~~~lkivvd~~nG~~~ 223 (524)
T 2z0f_A 167 EGLKGVKRLPLR-EALAR--AKPFDYAGLYVEKVAEAVDLEA-------IRASGLRIGVDPLGGASL 223 (524)
T ss_dssp TTTTTCCCCCHH-HHHHH--CEEECHHHHHHHHGGGTSCHHH-------HHHSCCCEEEECTTSTTH
T ss_pred cccccccccChh-hhccc--ccccchHHHHHHHHHHhcChhh-------hccCCCeEEEeCCCCchH
Confidence 1 1111 111 01222 2456899999999999887543 234689999999999973
No 10
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A {Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Probab=100.00 E-value=5.2e-36 Score=299.74 Aligned_cols=183 Identities=21% Similarity=0.242 Sum_probs=144.1
Q ss_pred ccccc-ceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHC
Q 023423 74 LQNGS-DVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (282)
Q Consensus 74 Lf~gt-dIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~ 152 (282)
+.||| ||||+++. .+||++++.++|+|||+|+.+. + ...+|+||||+|.+|+.++++++++|+++
T Consensus 64 ~~FGT~GiRG~~~~------~~ln~~~v~~i~~A~a~~l~~~-----~---~~~~VvVG~D~R~~S~~~~~~a~~~L~a~ 129 (570)
T 3na5_A 64 VKFGTSGHRGSAGR------HSFNEPHILAIAQAIAEERAKN-----G---ITGPCYVGKDTHALSEPAFISVLEVLAAN 129 (570)
T ss_dssp CCCBTTBEEECGGG------TSSSHHHHHHHHHHHHHHHHHT-----T---CCSCEEEEECSSTTHHHHHHHHHHHHHHT
T ss_pred ceecCCCceeecCC------CCCCHHHHHHHHHHHHHHHHHh-----C---CCCeEEEEeCCCcccHHHHHHHHHHHHHC
Confidence 55555 59999863 4899999999999999999864 2 12579999999999999999999999999
Q ss_pred CCcEE---EeccCChHHHHHHhhcCCCC-----CCeEEEEeccCCCCCCceEEEeeCCCCCChHHHHH-HHHHHHh---h
Q 023423 153 GCLVF---DMGLATTPACFMSTLLPPFA-----YDASIMMTASHLPYTRNGLKFFTKKGGLTSPVVED-ICGEAAR---K 220 (282)
Q Consensus 153 Gv~V~---dlG~~pTP~l~fav~~~~~~-----a~gGImITASHNP~~~NGiK~~~~~G~l~~~~i~~-i~~~~~~---~ 220 (282)
|++|+ |+|++|||+++|+++ +++ +++||||||||||++||||||++++|++.++++++ |++.+.+ .
T Consensus 130 Gi~V~~~~d~g~~PTP~vsfav~--~~~~~~~~~~~GImITASHNP~~~NGiK~~~~~G~~~~~~i~~~Ie~~~~~~~~~ 207 (570)
T 3na5_A 130 GVDVIVQENNGFTPTPAVSNAIL--VHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANALLAG 207 (570)
T ss_dssp TCCEEEEGGGCCCCHHHHHHHHH--HHHHTCSSCCEEEEECCTTCCTTCEEEEEECTTSSCCCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCccChHHHHHHHH--HhCCCccccceEEEEEeCCCChHHCcEEEecCCCCcCCHHHHHHHHHHHHHhhhc
Confidence 99999 579999999999997 566 89999999999999999999999999866666554 4433322 1
Q ss_pred ---hhcc-cccc-ccccCCCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCC
Q 023423 221 ---FANR-LTKV-STVLRNPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVS 281 (282)
Q Consensus 221 ---~~~~-~~~~-~~~g~~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~ 281 (282)
...+ .+.. ...|. +...|+.+.|+++|.+.++.+.+ +.+++|||+||+||++
T Consensus 208 ~~~~~~~~~~~~~~~~g~--i~~~d~~~~Yi~~l~~~i~~~~i-------~~~~lkIvvD~~~Gag 264 (570)
T 3na5_A 208 GLQGVKRISLDAAMASGH--VKAVDLVQPFVEGLADIVDMAAI-------QKAGLTLGVDPLGGSG 264 (570)
T ss_dssp TTTTCCCCCHHHHHHTTC--EEEECCHHHHHHHGGGTSCHHHH-------HHHTCCEEEECTTCTT
T ss_pred ccccccccchhhhccCCe--eeccchHHHHHHHHHhhcChhhh-------ccCCCEEEEECCCCcH
Confidence 1111 1110 01233 34668999999999999886542 3468999999999987
No 11
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis, isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Probab=100.00 E-value=2.9e-34 Score=287.05 Aligned_cols=209 Identities=17% Similarity=0.123 Sum_probs=152.9
Q ss_pred cccceeeeecccCcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCC
Q 023423 42 LSHSIKFTHVKSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGR 121 (282)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~ 121 (282)
+|.+++..|+...++. ....|+.+||||++++ ++|++.+.++++|++.+|.+..
T Consensus 1 ~~~~~~~~~~~~~~~~-------------~~~~FGT~GiRG~~~~-------~~t~~~~~~~~~a~~~~l~~~~------ 54 (572)
T 1kfi_A 1 MQQVIPAPRVQVTQPY-------------AGQKPGTSGLRKKVSE-------ATQPNYLENFVQSIFNTLRKDE------ 54 (572)
T ss_dssp --CCBCCCEEEECCCC-------------TTCCCBTTBEEEEHHH-------HTSTTHHHHHHHHHHHHSCGGG------
T ss_pred CCccccCcccccCCcC-------------ccCCccCCccceEecc-------eecHHHHHHHHHHHHHHHhhhc------
Confidence 3667777777766552 1345555579999984 7999999999999999986421
Q ss_pred CCCCC-eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEe---ccCChHHHHHHhhcCCC-----CCCeEEEEeccCCCC-
Q 023423 122 PVEDV-KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM---GLATTPACFMSTLLPPF-----AYDASIMMTASHLPY- 191 (282)
Q Consensus 122 ~~~~~-~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dl---G~~pTP~l~fav~~~~~-----~a~gGImITASHNP~- 191 (282)
.... +|+||||+|.+|++|+++++++|+++|++|+++ |++|||+++|+++ ++ +|++||||||||||+
T Consensus 55 -~~~~~~VvIG~D~R~sS~~~a~~~a~~l~a~Gi~V~~~~~~G~~pTP~l~fav~--~~n~~~~~a~~GImITASHNP~~ 131 (572)
T 1kfi_A 55 -LKPKNVLFVGGDGRYFNRQAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIR--KVNEEVGNCIGGIILTASHNPGG 131 (572)
T ss_dssp -SSSSCEEEEEECCCTTHHHHHHHHHHHHHHTTCSEEEEEGGGCBCHHHHHHHHH--HHHHHSCCEEEEEEECCTTSCCS
T ss_pred -cCCCCEEEEEecCCCCHHHHHHHHHHHHHHCCCEEEEecCCCCCChHHHHHHHH--HhccccCCcceEEEEeCCCCCCC
Confidence 0124 899999999999999999999999999999999 9999999999998 77 899999999999994
Q ss_pred -C--CceEEEeeCCCCCChHHH-HHHHHHHHh-hhhc---c----cccccccc-----C-------CCCcccchHHHHHH
Q 023423 192 -T--RNGLKFFTKKGGLTSPVV-EDICGEAAR-KFAN---R----LTKVSTVL-----R-------NPPTRVDFMSTYAK 247 (282)
Q Consensus 192 -~--~NGiK~~~~~G~l~~~~i-~~i~~~~~~-~~~~---~----~~~~~~~g-----~-------~~~~~~d~~~~Yi~ 247 (282)
+ ||||||++++|...++++ ++|++.+.+ ..+. . .......+ . ......|+.+.|++
T Consensus 132 ~~~~~NGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~Yi~ 211 (572)
T 1kfi_A 132 KEHGDFGIKFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINLDQIGVYKFEGTRLEKSHFEVKVVDTVQDYTQ 211 (572)
T ss_dssp TTTCEEEEEEECTTSSBCCHHHHHHHHHHHTTCCEEEECCCCGGGTCCTTSCEEEEEEBCCTTCCEEEEEEECSSHHHHH
T ss_pred cCcccCcEEEecCCCCcCCHHHHHHHHHHHHhhhcccccccccccccChhhccccccccccccccccceeecCcHHHHHH
Confidence 4 999999999999555554 455555432 1110 0 00000011 0 00234578899999
Q ss_pred HHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 248 HLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 248 ~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
+|++.++.+.++. ....+++|||+||+||+++
T Consensus 212 ~l~~~~~~~~i~~---~l~~~~lkIvvd~~nG~~~ 243 (572)
T 1kfi_A 212 LMQKLFDFDLLKG---LFSNKDFSFRFDGMHGVAG 243 (572)
T ss_dssp HHHHHSCHHHHHH---HHTCTTCCEEEECTTSTHH
T ss_pred HHHHhcCHHHHhh---hcccCCCEEEEeCCCcchH
Confidence 9999987543200 0012689999999999863
No 12
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase, phosphotransferase; HET: SEP; 2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Probab=100.00 E-value=1.3e-33 Score=282.06 Aligned_cols=192 Identities=17% Similarity=0.128 Sum_probs=141.9
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCC
Q 023423 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (282)
Q Consensus 74 Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~G 153 (282)
-|+.+||||.+++-.. ..+|||+++.+|++|+|+++.+ ..+|+||||+|.+|++|+++++++|+++|
T Consensus 15 ~fGTsGiRG~v~~~~~--~~~~t~~f~~~l~~A~g~~~~~-----------g~~VvVG~D~R~~s~~~~~~~a~~l~a~G 81 (561)
T 3pmg_A 15 KPGTSGLRKRVKVFQS--STNYAENFIQSIISTVEPAQRQ-----------EATLVVGGDGRFYMKEAIQLIVRIAAANG 81 (561)
T ss_dssp CCBTTBEEEEHHHHHH--STTHHHHHHHHHHHTSCGGGTT-----------TCEEEEEECCCTTHHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCeeeCCCCC--CcCccHHHHHHHHHHHHhhhcC-----------CCEEEEEeCCCccHHHHHHHHHHHHHHCC
Confidence 4566779999863000 1379999999999999876543 25899999999999999999999999999
Q ss_pred CcEEEe---ccCChHHHHHHhhcCCCCCCeEEEEeccCCC---CCCceEEEeeCCCCCChHHHH-HHHHHHHh-hhhcc-
Q 023423 154 CLVFDM---GLATTPACFMSTLLPPFAYDASIMMTASHLP---YTRNGLKFFTKKGGLTSPVVE-DICGEAAR-KFANR- 224 (282)
Q Consensus 154 v~V~dl---G~~pTP~l~fav~~~~~~a~gGImITASHNP---~~~NGiK~~~~~G~l~~~~i~-~i~~~~~~-~~~~~- 224 (282)
++|+++ |++|||+++|+++ ++++++|||||||||| ++||||||++++|+..+++++ +|++.+.+ +.+..
T Consensus 82 v~V~~~~~~g~~pTP~vs~av~--~~~a~gGImITASHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~i~~~~~~ 159 (561)
T 3pmg_A 82 IGRLVIGQNGILSTPAVSCIIR--KIKAIGGIILTASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAIC 159 (561)
T ss_dssp CCEEEEEEEEECCHHHHHHHHH--HHTCSEEEEECCTTSCCSTTSEEEEEEEETTSSBCCHHHHHHHHHHHHHCCEEEEC
T ss_pred CEEEEecCCCccCHHHHHHHHH--HhcCCeEEEEEeCCCCCCCCCcceEEEEeCCCCcCCHHHHHHHHHHHHhhhhhccc
Confidence 999999 9999999999998 7889999999999999 569999999999985555544 45544432 11110
Q ss_pred c---cccccccC-----------CCCcccchHHHHHHHHHHHhchhcCCCCCCCCCCCCCeEEEeCCCCCCC
Q 023423 225 L---TKVSTVLR-----------NPPTRVDFMSTYAKHLRDVIKERVNHPLHYETPLKGFQVPFFTSLFVSY 282 (282)
Q Consensus 225 ~---~~~~~~g~-----------~~~~~~d~~~~Yi~~L~~~i~~~~~~~~~~~~~l~~lkVvvD~~~~~~~ 282 (282)
+ ......|. ..++..|..+.|+++|++.++.+.++.+ ....++||||+||+||+++
T Consensus 160 ~~~~~~~~~ig~~~~~~~~~~~~~~~~~~d~~~~Yi~~l~~~~d~~~i~~~--~~~~~~lkIvvD~~~Ga~~ 229 (561)
T 3pmg_A 160 PDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKEL--LSGPNRLKIRIDAMHGVVG 229 (561)
T ss_dssp TTCCCCTTSCEEEEECCTTCSSCEEEEEECSSHHHHHHHHTTSCHHHHHHH--HHSTTCCCEEEECTTSTTH
T ss_pred cccccchhhhccccccccccccCCceEecChHHHHHHHHHHhcChHHhhhh--hccCCCcEEEEECCCCchH
Confidence 0 00001111 0023457889999999999986542100 0012679999999999863
No 13
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=99.70 E-value=1.6e-17 Score=165.24 Aligned_cols=69 Identities=19% Similarity=0.138 Sum_probs=56.1
Q ss_pred hccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHH
Q 023423 70 RIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGL 149 (282)
Q Consensus 70 ~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL 149 (282)
..+.+|+.+|+||.+ +|||+++.++|+|+|..
T Consensus 19 ~~~~~fGt~G~RG~~---------~~~~~~~~~~g~a~~~r--------------------------------------- 50 (544)
T 2dka_A 19 GVTFTYGTAGFRMKA---------DKLDYVTFTVGIIASLR--------------------------------------- 50 (544)
T ss_dssp SCCCCCBTTBEEEEG---------GGCHHHHHHHHHHHHHH---------------------------------------
T ss_pred CCeeEeCCCCccccc---------ccCHHHHHHHHHHHHHH---------------------------------------
Confidence 356788788899976 69999999999999631
Q ss_pred HHCCCcEEEeccCChHHHHHHhhcCCCC-CCeEEEEeccCCCCCCceEEEeeCCCCCChHH
Q 023423 150 ARAGCLVFDMGLATTPACFMSTLLPPFA-YDASIMMTASHLPYTRNGLKFFTKKGGLTSPV 209 (282)
Q Consensus 150 ~s~Gv~V~dlG~~pTP~l~fav~~~~~~-a~gGImITASHNP~~~NGiK~~~~~G~l~~~~ 209 (282)
++ +++ +++||||||||||++||||||++++|...+++
T Consensus 51 ---------------------~~--~~~~~~~GImITASHNP~~dNGiK~~~~~G~~l~~~ 88 (544)
T 2dka_A 51 ---------------------SK--YLQGKTVGVMITASHNPPEDNGVKVVDPLGSMLESS 88 (544)
T ss_dssp ---------------------HH--HTTTCEEEEEECCC-CCTTEEEEEEECTTSSBCCGG
T ss_pred ---------------------HH--hcCCcCceEEEeCCCCCcccCceeeecCCCCcCCHH
Confidence 22 456 89999999999999999999999999854443
No 14
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=97.80 E-value=1.9e-05 Score=78.22 Aligned_cols=47 Identities=34% Similarity=0.473 Sum_probs=45.5
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHC-CCcEEEeccCChHHHHHHhh
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARA-GCLVFDMGLATTPACFMSTL 172 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~-Gv~V~dlG~~pTP~l~fav~ 172 (282)
.+|+||||+|.+++.|.+++.+||.+. |++|.++|.++||+++|++.
T Consensus 133 ~~v~vg~d~r~s~~~l~~al~~gl~~~~G~~v~~~G~~ttP~l~~~v~ 180 (544)
T 2dka_A 133 ANVVIARDSRESSPALSMATIDGFQSVPNTKYQDFGLFTTPELHYVTR 180 (544)
T ss_dssp EEEEEEECSCTTHHHHHHHHHHHHHTSSSEEEEEEEECCHHHHHHHHH
T ss_pred ceEEeccCCCCCCHHHHHHHHhhhhhhcCCeEEEecccccchheeeee
Confidence 589999999999999999999999999 99999999999999999987
No 15
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=91.36 E-value=0.83 Score=38.06 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=44.9
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCC-----hHHHHHHhh--cCCCCCCeEEEEecc
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT-----TPACFMSTL--LPPFAYDASIMMTAS 187 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~p-----TP~l~fav~--~~~~~a~gGImITAS 187 (282)
.+|+||.|. .+-.|++.+.+-|.+.|.+|+|+|.-+ -|-+...+. ...-.++-||.|.+|
T Consensus 13 ~~i~igsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 79 (155)
T 1o1x_A 13 VKIAIASDH--AAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGT 79 (155)
T ss_dssp CEEEEEECS--TTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred eeEEEeeCc--hHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 579999995 688999999999999999999999633 343333222 003467889988875
No 16
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=89.99 E-value=0.87 Score=37.67 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=43.1
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCC-----hHHHHHHhh--cCCCCCCeEEEEecc
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT-----TPACFMSTL--LPPFAYDASIMMTAS 187 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~p-----TP~l~fav~--~~~~~a~gGImITAS 187 (282)
+|+||.|. .+-.+++.+.+-|.+.|++|+|+|.-+ =|-+...+. ...-.++-||.|-+|
T Consensus 3 kIaigsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 68 (149)
T 2vvr_A 3 KIAFGCDH--VGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGT 68 (149)
T ss_dssp EEEEEECT--TGGGGHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCC
Confidence 58899985 678899999999999999999998633 343333322 003457888888774
No 17
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=87.80 E-value=1 Score=37.80 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=43.2
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccC------ChHHHHHHhhc--CCCCCCeEEEEecc
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA------TTPACFMSTLL--PPFAYDASIMMTAS 187 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~------pTP~l~fav~~--~~~~a~gGImITAS 187 (282)
+|+||.|. .+-.+++.+.+-|.+.|++|+|+|.- .=|-+...+.. ..-.++-||.|.+|
T Consensus 5 kIaigsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 71 (162)
T 2vvp_A 5 RVYLGADH--AGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGS 71 (162)
T ss_dssp EEEEEECH--HHHHHHHHHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCC
Confidence 68999984 67999999999999999999999843 23444333220 02457889988773
No 18
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=87.15 E-value=2 Score=35.52 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=43.8
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCCh-----HHHHHHhh--cCCCCCCeEEEEec
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT-----PACFMSTL--LPPFAYDASIMMTA 186 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pT-----P~l~fav~--~~~~~a~gGImITA 186 (282)
+|+||.|. .+-.|++.+.+-|.+.|++|+|+|.-+. |-+...+. ...-.++-||.|-+
T Consensus 2 kI~igsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCG 66 (149)
T 3he8_A 2 KIGIGSDH--GGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICG 66 (149)
T ss_dssp EEEEEECG--GGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEES
T ss_pred EEEEEECc--hhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 58899985 6789999999999999999999986543 55443322 11346788998877
No 19
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=86.00 E-value=2.4 Score=35.77 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=44.8
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCCh-----HHHHHHhh--cCCCCCCeEEEEecc
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT-----PACFMSTL--LPPFAYDASIMMTAS 187 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pT-----P~l~fav~--~~~~~a~gGImITAS 187 (282)
-+|+||.|. .+-.|++.+.+-|.+.|++|+|+|.-.. |-+...+. ...-.++-||.|.+|
T Consensus 21 MkIaIgsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 87 (169)
T 3ph3_A 21 MKIGIGSDH--GGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGT 87 (169)
T ss_dssp CEEEEEECG--GGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred CEEEEEeCc--hHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 379999996 5678999999999999999999986543 55443332 113467889988773
No 20
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=85.69 E-value=2.2 Score=35.87 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=42.9
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCCh-----HHHHHHhh--cCCCCCCeEEEEecc
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT-----PACFMSTL--LPPFAYDASIMMTAS 187 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pT-----P~l~fav~--~~~~~a~gGImITAS 187 (282)
-+|+||.|. .+-.|++.+.+-|.+.|++|+|+|.-.. |-+...+. ...-.++-||.|.+|
T Consensus 22 MkIaIgsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGT 88 (166)
T 3s5p_A 22 MKVAFASDH--GGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGT 88 (166)
T ss_dssp CEEEEEECG--GGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred eEEEEEECc--hHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCC
Confidence 479999995 6789999999999999999999986543 33322221 113467888988773
No 21
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=81.64 E-value=2.8 Score=36.68 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=42.9
Q ss_pred CeEEEEecCCCChH---HHHHHHHHHHHHCCCcEEEeccCC--------hHHHHHHhh--cCCCCCCeEEEEecc
Q 023423 126 VKVSLGKDPRVSGP---SLSVAVFAGLARAGCLVFDMGLAT--------TPACFMSTL--LPPFAYDASIMMTAS 187 (282)
Q Consensus 126 ~~VvVG~D~R~sS~---~la~ala~gL~s~Gv~V~dlG~~p--------TP~l~fav~--~~~~~a~gGImITAS 187 (282)
-+|+||.|.- ..- .+++.+.+-|.+.|++|+|+|.-. =|-+...+. ...-.++-||.|.+|
T Consensus 4 MkIaIgsDha-~~lKn~ilk~~i~~~L~~~G~eV~D~G~~s~~d~~s~DYPd~a~~vA~~V~~g~~d~GIliCGT 77 (216)
T 2ppw_A 4 MKIALINENS-QASKNHIIYDSLKEATDKKGYQLFNYGMRGEEGESQLTYVQNGLMAAILLNTKAVDFVVTGCGT 77 (216)
T ss_dssp CEEEECCCTT-TGGGHHHHHHHHHHHHHHHTCEEEECSCCSCTTCCCCCHHHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred cEEEEEcCCh-HhhhhhhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCC
Confidence 4799999988 432 367999999999999999999753 233332221 013467889988874
No 22
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=81.49 E-value=3.8 Score=33.78 Aligned_cols=60 Identities=23% Similarity=0.334 Sum_probs=43.6
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCCh------HHHHHHhhcCCCCCCeEEEEecc
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT------PACFMSTLLPPFAYDASIMMTAS 187 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pT------P~l~fav~~~~~~a~gGImITAS 187 (282)
.+|+||.|. .+-.|++.+.+-|.+.|++|+|+|.-++ |-+...+...-..++-||.|-+|
T Consensus 8 mkI~igsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~d~GIliCGT 73 (148)
T 4em8_A 8 KRVFLSSDH--AGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVSDTSFGVLICGT 73 (148)
T ss_dssp SEEEEEECG--GGHHHHHHHHHHHHHTTCEEEECCCCTTCSCCCGGGGTHHHHTTCBTTBEEEEEESS
T ss_pred eEEEEEECc--hhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCeEEEEccC
Confidence 379999995 6789999999999999999999986432 44444433111156777777764
No 23
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=76.12 E-value=5 Score=34.05 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=44.3
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHH--CCCcEEEeccCC-----hHHHHHHhh--cCCCCCCeEEEEecc
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLAR--AGCLVFDMGLAT-----TPACFMSTL--LPPFAYDASIMMTAS 187 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s--~Gv~V~dlG~~p-----TP~l~fav~--~~~~~a~gGImITAS 187 (282)
+|+||.|. .+-.|++.+.+-|.+ .|++|+|+|.-. =|-+...+. ...-.++-||.|-+|
T Consensus 24 kIaIgsDh--aG~~lK~~i~~~L~~~~~G~eV~D~G~~s~~s~DYPd~a~~vA~~V~~g~~d~GIliCGT 91 (179)
T 3k7p_A 24 RVAIGTDH--PAFAIHENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVARKEVEFGVLAAGS 91 (179)
T ss_dssp EEEEEECT--GGGGGHHHHHHHHHHTCTTEEEEECSCSSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred EEEEEECc--hHHHHHHHHHHHHHhcCCCCeEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEccC
Confidence 69999996 567899999999999 999999998643 355443322 113467889988773
No 24
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=70.53 E-value=8.8 Score=32.69 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=44.3
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCC--CcEEEeccC------ChHHHHHHhh--cCCCCCCeEEEEecc
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAG--CLVFDMGLA------TTPACFMSTL--LPPFAYDASIMMTAS 187 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~G--v~V~dlG~~------pTP~l~fav~--~~~~~a~gGImITAS 187 (282)
+|+||.|. .+-.|++.+.+-|.+.| ++|+|+|.- .=|-+...+. ...-.++-||.|.+|
T Consensus 31 kIaIgsDH--aG~~LK~~i~~~L~~~G~g~eV~D~G~~s~~e~~DYPd~a~~vA~~V~~ge~d~GIliCGT 99 (184)
T 3sgw_A 31 RLAIACDD--AGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDGKVDRALMICGT 99 (184)
T ss_dssp EEEEEECG--GGHHHHHHHHHHHTTCTTEEEEEECSCCSTTCCCCHHHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred EEEEEECc--hhHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCC
Confidence 69999995 67899999999999999 799999975 2344443322 113467889998873
No 25
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=69.35 E-value=5.7 Score=34.64 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=41.3
Q ss_pred CeEEEEecCCCChHHHHH-----HHHHHHHHCCCcEEEecc-------CChHHHHHHhh--cCCCCCCeEEEEec
Q 023423 126 VKVSLGKDPRVSGPSLSV-----AVFAGLARAGCLVFDMGL-------ATTPACFMSTL--LPPFAYDASIMMTA 186 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~-----ala~gL~s~Gv~V~dlG~-------~pTP~l~fav~--~~~~~a~gGImITA 186 (282)
=+|+||.|.- ..+++ .+.+-|.+.|++|+|+|. +.=|.+...+. ...-.++-||.|.+
T Consensus 4 MkIaigsDha---~~lK~~~i~~~l~~~L~~~G~eV~D~G~~~~~~~~~dYpd~a~~vA~~V~~g~~d~GIliCG 75 (214)
T 3ono_A 4 MKIALMMENS---QAAKNAMVAGELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILLNSKAVDFVVTGCG 75 (214)
T ss_dssp CEEEECCCGG---GGGGHHHHHHHHHHHHHHTTCEEEECSCSSTTSSCCCHHHHHHHHHHHHHTTSCSEEEEEES
T ss_pred cEEEEECCCc---HHHHChhHHHHHHHHHHHCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 3799999987 55566 999999999999999994 12344433222 11346788999877
No 26
>2ehp_A AQ_1627 protein; putative protein, NPPSFA, national project protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eiu_A
Probab=64.12 E-value=19 Score=27.98 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 94 dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
-||.++..|+|.|+++.|+-... . +..+++=-|.. -+.-+++-|++..|-+|+..
T Consensus 19 PLTaENL~R~GLALCtLl~iek~------~-eeP~l~i~elN----FltmalsVGFM~gGG~V~vg 73 (126)
T 2ehp_A 19 PLTAENLFRIGLALCTLWILDKE------I-EEPTLSIPETN----FVTLALSVGFMNAGGSVNVG 73 (126)
T ss_dssp TSSHHHHHHHHHHHHHHHHHTTC------C-SSCEEEESSCS----HHHHHHHHHHHHTTCEEEES
T ss_pred cccHHHHHHHHHHHHHHHHHHhh------h-cCCeeeecccc----eeeeeeeeeEeccCcceEee
Confidence 69999999999999998875421 1 23455555554 35667788999999998753
No 27
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=59.14 E-value=74 Score=26.96 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=36.3
Q ss_pred CCeEEEEe---cCCCChHHHHHHHHHHHHHCCCcEEEecc-CChHHHHHHhhcCCCCCCeEEEE
Q 023423 125 DVKVSLGK---DPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMM 184 (282)
Q Consensus 125 ~~~VvVG~---D~R~sS~~la~ala~gL~s~Gv~V~dlG~-~pTP~l~fav~~~~~~a~gGImI 184 (282)
..+|+++. |.+.-+..+ +...|...|++|+++|. +|...+--++. +.+. --|.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~i---v~~~l~~~G~~Vi~LG~~vp~e~iv~~~~--~~~~-d~v~l 149 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRL---VTTMLGANGFQIVDLGVDVLNENVVEEAA--KHKG-EKVLL 149 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHH---HHHHHHHTSCEEEECCSSCCHHHHHHHHH--HTTT-SCEEE
T ss_pred CCeEEEEeCCCChhHHHHHH---HHHHHHHCCCeEEEcCCCCCHHHHHHHHH--HcCC-CEEEE
Confidence 46888885 666666555 56678999999999986 55555544444 3343 33666
No 28
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=58.02 E-value=30 Score=31.05 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=63.4
Q ss_pred cccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecC
Q 023423 55 VTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP 134 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~ 134 (282)
|+.+.+..++.+...++-+-.-..|+.|++--|..|+...||.+.-.++.+...+.... ...|++|--.
T Consensus 25 TPf~~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~g-----------rvpviaGvg~ 93 (304)
T 3l21_A 25 TPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGD-----------RARVIAGAGT 93 (304)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------TSEEEEECCC
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCC-----------CCeEEEeCCC
Confidence 44455566777777776544456789999888889998999999998888887776532 2467777432
Q ss_pred CCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 135 RVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 135 R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
- +-.=+..+++-..+.|++.+.+
T Consensus 94 ~--~t~~ai~la~~a~~~Gadavlv 116 (304)
T 3l21_A 94 Y--DTAHSIRLAKACAAEGAHGLLV 116 (304)
T ss_dssp S--CHHHHHHHHHHHHHHTCSEEEE
T ss_pred C--CHHHHHHHHHHHHHcCCCEEEE
Confidence 2 2333444556677788887766
No 29
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=55.22 E-value=12 Score=32.97 Aligned_cols=61 Identities=13% Similarity=0.044 Sum_probs=43.7
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCC--------hHHHHHHhhc--CCCCCCeEEEEecc
Q 023423 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT--------TPACFMSTLL--PPFAYDASIMMTAS 187 (282)
Q Consensus 127 ~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~p--------TP~l~fav~~--~~~~a~gGImITAS 187 (282)
.|+++.|.-.....|++.+.+-|.+.|++|+|+|.-. =|-+...+.. ..-.++-||.|.+|
T Consensus 23 ali~~~sqa~kN~~lKe~i~~~L~~~G~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~g~~d~GIliCGT 93 (231)
T 3c5y_A 23 ALIIENSQAAKNAVVHEALTTVAEPLGHKVFNYGMYTAEDKASLTYVMNGLLAGILLNSGAADFVVTGCGT 93 (231)
T ss_dssp EECCCGGGGGGHHHHHHHHHHHHGGGTCEEEECCCCSTTCSSCCCHHHHHHHHHHHHHHTSCSEEEEEESS
T ss_pred EEEecCCHhhhHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCC
Confidence 4566777766777999999999999999999999753 2444333220 02457889998874
No 30
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=54.93 E-value=83 Score=29.38 Aligned_cols=53 Identities=9% Similarity=0.007 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCC-hHHHHHHHHHHHHHCCCcEEEe
Q 023423 99 AVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVS-GPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 99 ~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~s-S~~la~ala~gL~s~Gv~V~dl 159 (282)
...++-..|-+|-... ....+|+|-|++... .+.++++++++|.+.|+++..+
T Consensus 247 ~~~~ii~~Y~~w~~~~--------~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~ 300 (410)
T 4dik_A 247 DPQRLLNHYVSVAKGD--------PKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVY 300 (410)
T ss_dssp CHHHHHHHHHHHHHTC--------CCTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHhhccc--------ccccceeeEEecccChHHHHHHHHHHHHHhcCCceEEE
Confidence 4566667787776532 123589999999875 5679999999999999997643
No 31
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=53.01 E-value=47 Score=29.60 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=63.9
Q ss_pred cCcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEe
Q 023423 53 SSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGK 132 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~ 132 (282)
..|+.+.+..++.+...++-+-.-..|+.|++--|..|+...||.+.-.++.+...+.... ...|++|-
T Consensus 15 ~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------rvpviaGv 83 (297)
T 3flu_A 15 LITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAK-----------RVPVIAGT 83 (297)
T ss_dssp CCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSCEEEEC
T ss_pred eeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCC-----------CCcEEEeC
Confidence 3455566667777777776544456789999888889998999999988888887766532 24577764
Q ss_pred cCCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 133 DPRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 133 D~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
-.-. -.=+-.+++-..+.|++.+.+
T Consensus 84 g~~~--t~~ai~la~~a~~~Gadavlv 108 (297)
T 3flu_A 84 GANN--TVEAIALSQAAEKAGADYTLS 108 (297)
T ss_dssp CCSS--HHHHHHHHHHHHHTTCSEEEE
T ss_pred CCcC--HHHHHHHHHHHHHcCCCEEEE
Confidence 3322 222334456667788887765
No 32
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=52.76 E-value=68 Score=28.64 Aligned_cols=93 Identities=14% Similarity=0.050 Sum_probs=62.4
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+.+.+..++.+...++-.-.-..|+.|++--|..|+..-||.+.=.++.+...+.... ...|++|-=
T Consensus 25 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------rvpviaGvg 93 (304)
T 3cpr_A 25 VTPFTESGDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGD-----------RAKLIAGVG 93 (304)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTT-----------TSEEEEECC
T ss_pred eccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-----------CCcEEecCC
Confidence 345555667777777776544446689999888889998899999888888887766531 245776653
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.-.+. =+-.+++-..+.|++.+.+
T Consensus 94 ~~st~--~ai~la~~A~~~Gadavlv 117 (304)
T 3cpr_A 94 TNNTR--TSVELAEAAASAGADGLLV 117 (304)
T ss_dssp CSCHH--HHHHHHHHHHHTTCSEEEE
T ss_pred CCCHH--HHHHHHHHHHhcCCCEEEE
Confidence 32222 2333456667788886655
No 33
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=51.72 E-value=45 Score=29.86 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=60.8
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+.+.+..++.+...++-.-.-..|+.|++--|..|+..-||.+.-.++.+...+.... ...|++|-=
T Consensus 20 vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-----------rvpViaGvg 88 (303)
T 2wkj_A 20 LTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKG-----------KIKLIAHVG 88 (303)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------TSEEEEECC
T ss_pred EcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCC-----------CCcEEEecC
Confidence 345555667777777776554456789999888888898899999888888887766531 245666643
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.- +-.=+-.+++-..+.|++.+.+
T Consensus 89 ~~--~t~~ai~la~~A~~~Gadavlv 112 (303)
T 2wkj_A 89 CV--STAESQQLAASAKRYGFDAVSA 112 (303)
T ss_dssp CS--SHHHHHHHHHHHHHHTCSEEEE
T ss_pred CC--CHHHHHHHHHHHHhCCCCEEEe
Confidence 22 2222333455566677776655
No 34
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=51.63 E-value=42 Score=30.31 Aligned_cols=93 Identities=20% Similarity=0.172 Sum_probs=64.0
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+.+.+..++.+...++-+-.-..|+.|++--|..|+..-||.+.-.++.+...+.... ...|++|--
T Consensus 31 vTPf~~dg~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g-----------rvpViaGvg 99 (315)
T 3si9_A 31 ITPFDDNGAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAK-----------RVPVVAGAG 99 (315)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSCBEEECC
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCC-----------CCcEEEeCC
Confidence 445556667788877776554456789999988999998999999988888887766532 245766643
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.- +-.=+-.+++-..+.|++.+.+
T Consensus 100 ~~--st~~ai~la~~A~~~Gadavlv 123 (315)
T 3si9_A 100 SN--STSEAVELAKHAEKAGADAVLV 123 (315)
T ss_dssp CS--SHHHHHHHHHHHHHTTCSEEEE
T ss_pred CC--CHHHHHHHHHHHHhcCCCEEEE
Confidence 32 2333334456677788887765
No 35
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=50.61 E-value=42 Score=29.77 Aligned_cols=93 Identities=6% Similarity=0.058 Sum_probs=63.2
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+.+.+..++.+...++-+-.-..|+.|++--|..|+...||.+.-.++.+...+.... ...|++|--
T Consensus 10 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------r~pviaGvg 78 (291)
T 3tak_A 10 VTPMLKDGGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANK-----------RIPIIAGTG 78 (291)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSCEEEECC
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCC-----------CCeEEEeCC
Confidence 345556667777777776554456789999888889998899999998888887766532 245777644
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.-.+.+ +-.+++-..+.|++.+.+
T Consensus 79 ~~~t~~--ai~la~~a~~~Gadavlv 102 (291)
T 3tak_A 79 ANSTRE--AIELTKAAKDLGADAALL 102 (291)
T ss_dssp CSSHHH--HHHHHHHHHHHTCSEEEE
T ss_pred CCCHHH--HHHHHHHHHhcCCCEEEE
Confidence 333222 334456667778887765
No 36
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=50.41 E-value=44 Score=30.14 Aligned_cols=94 Identities=10% Similarity=0.072 Sum_probs=64.6
Q ss_pred cCcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEe
Q 023423 53 SSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGK 132 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~ 132 (282)
..|+.+.+..++.+...++-+-.-..|+.|++--|..|+..-||.+.-.++.+...+.... ...|++|-
T Consensus 31 ~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g-----------rvpViaGv 99 (314)
T 3qze_A 31 LVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKG-----------RIPVIAGT 99 (314)
T ss_dssp CCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTT-----------SSCEEEEC
T ss_pred eECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-----------CCcEEEeC
Confidence 3455566677788877776554456789999888888888999999988888887766531 24576664
Q ss_pred cCCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 133 DPRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 133 D~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
-.-.+.+ +-.+++-..+.|++.+.+
T Consensus 100 g~~st~e--ai~la~~A~~~Gadavlv 124 (314)
T 3qze_A 100 GANSTRE--AVALTEAAKSGGADACLL 124 (314)
T ss_dssp CCSSHHH--HHHHHHHHHHTTCSEEEE
T ss_pred CCcCHHH--HHHHHHHHHHcCCCEEEE
Confidence 3332222 334556677788887765
No 37
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=50.28 E-value=39 Score=30.53 Aligned_cols=94 Identities=11% Similarity=-0.024 Sum_probs=64.3
Q ss_pred cCcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEe
Q 023423 53 SSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGK 132 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~ 132 (282)
..|+.+.+..++.+...++-+-.-..|+.|++--|..|+..-||.+.-.++.+...+.... ...|++|-
T Consensus 32 ~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g-----------rvpViaGv 100 (315)
T 3na8_A 32 TITPFAADGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAH-----------RVPTIVSV 100 (315)
T ss_dssp CCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTT-----------SSCBEEEC
T ss_pred eeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-----------CCcEEEec
Confidence 3455556667777777776544456789999888888888899999888888887766532 24577764
Q ss_pred cCCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 133 DPRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 133 D~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
-.- +-.=+-.+++-..+.|++.+.+
T Consensus 101 g~~--~t~~ai~la~~A~~~Gadavlv 125 (315)
T 3na8_A 101 SDL--TTAKTVRRAQFAESLGAEAVMV 125 (315)
T ss_dssp CCS--SHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCC--CHHHHHHHHHHHHhcCCCEEEE
Confidence 322 2233344566677788887766
No 38
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=49.55 E-value=46 Score=29.57 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=62.7
Q ss_pred cCcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEe
Q 023423 53 SSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGK 132 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~ 132 (282)
..|+.+.+ .++.+...++-+-.-..|+.|++--|..|+..-||.+.-.++.+...+.... ...|++|-
T Consensus 11 ~vTPf~~d-~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~g-----------rvpviaGv 78 (292)
T 3daq_A 11 LTTPFTNN-KVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDK-----------RVPVIAGT 78 (292)
T ss_dssp CCCCEETT-EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-----------SSCEEEEC
T ss_pred eecCcCCC-CcCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCC-----------CCcEEEeC
Confidence 34555666 7777777776444446789998888888888899999988888887766531 24677774
Q ss_pred cCCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 133 DPRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 133 D~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
-.- +-.=+-.+++-..+.|++.+.+
T Consensus 79 g~~--~t~~ai~la~~a~~~Gadavlv 103 (292)
T 3daq_A 79 GTN--DTEKSIQASIQAKALGADAIML 103 (292)
T ss_dssp CCS--CHHHHHHHHHHHHHHTCSEEEE
T ss_pred Ccc--cHHHHHHHHHHHHHcCCCEEEE
Confidence 322 2222444556667778887655
No 39
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=49.06 E-value=58 Score=29.07 Aligned_cols=92 Identities=13% Similarity=0.105 Sum_probs=62.3
Q ss_pred cccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecC
Q 023423 55 VTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP 134 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~ 134 (282)
|+.+.+..++.+...++-.-.-..|+.|++--|..|+..-||.+.-.++.+...+.... ...|++|-=.
T Consensus 22 TPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-----------rvpViaGvg~ 90 (301)
T 1xky_A 22 TPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDK-----------RVPVIAGTGS 90 (301)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSCEEEECCC
T ss_pred CcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-----------CceEEeCCCC
Confidence 44455667777777776554456789999888888998899999998888887766531 2457766533
Q ss_pred CCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 135 RVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 135 R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
-.+.+ +-.+++-..+.|++.+.+
T Consensus 91 ~~t~~--ai~la~~A~~~Gadavlv 113 (301)
T 1xky_A 91 NNTHA--SIDLTKKATEVGVDAVML 113 (301)
T ss_dssp SCHHH--HHHHHHHHHHTTCSEEEE
T ss_pred CCHHH--HHHHHHHHHhcCCCEEEE
Confidence 22222 334456667788887655
No 40
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=45.88 E-value=44 Score=30.14 Aligned_cols=92 Identities=10% Similarity=-0.012 Sum_probs=64.3
Q ss_pred Cccccc-ccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEe
Q 023423 54 SVTDKY-NEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGK 132 (282)
Q Consensus 54 ~~~~~~-~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~ 132 (282)
.|+.+. +..++.+...++-+-.-..|+.|++--|..|+..-||.+.=.++.+...+.... ...|++|-
T Consensus 20 vTPf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~g-----------rvpViaGv 88 (316)
T 3e96_A 20 ITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHG-----------RALVVAGI 88 (316)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTT-----------SSEEEEEE
T ss_pred eCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCC-----------CCcEEEEe
Confidence 344455 566777777776544446789999888888888899999888888887766531 24688887
Q ss_pred cCCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 133 DPRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 133 D~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
-. +-.=+-.+++-..+.|++.+.+
T Consensus 89 g~---~t~~ai~la~~A~~~Gadavlv 112 (316)
T 3e96_A 89 GY---ATSTAIELGNAAKAAGADAVMI 112 (316)
T ss_dssp CS---SHHHHHHHHHHHHHHTCSEEEE
T ss_pred Cc---CHHHHHHHHHHHHhcCCCEEEE
Confidence 42 3333444566777788887766
No 41
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=45.57 E-value=62 Score=28.67 Aligned_cols=92 Identities=12% Similarity=0.078 Sum_probs=63.3
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+.+.+. ++.+...++-+-.-..|+.|++--|..|+..-||.+.-.++.+...+.... ...|++|-=
T Consensus 11 vTPf~~dg-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------r~pvi~Gvg 78 (291)
T 3a5f_A 11 ITPFTNTG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNK-----------RIPVIAGTG 78 (291)
T ss_dssp CCCBCSSS-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-----------SSCEEEECC
T ss_pred EcCcCCCC-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-----------CCcEEEeCC
Confidence 45556666 777777776544446788998887888888899999988888887766431 245777764
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.-.+.+ +-.+++-..+.|++.+.+
T Consensus 79 ~~~t~~--ai~la~~a~~~Gadavlv 102 (291)
T 3a5f_A 79 SNNTAA--SIAMSKWAESIGVDGLLV 102 (291)
T ss_dssp CSSHHH--HHHHHHHHHHTTCSEEEE
T ss_pred cccHHH--HHHHHHHHHhcCCCEEEE
Confidence 322222 344566778899997766
No 42
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=45.22 E-value=76 Score=29.43 Aligned_cols=93 Identities=12% Similarity=-0.004 Sum_probs=64.2
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+.+.+..++.+...++-.-.-..|+.|++--|..|+..-||.+.=.++.+...+... | ...|++|-=
T Consensus 68 vTPF~~dg~ID~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~-------g----rvpViaGvg 136 (360)
T 4dpp_A 68 KTPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-------G----SIKVIGNTG 136 (360)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-------T----TSEEEEECC
T ss_pred eCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhC-------C----CCeEEEecC
Confidence 44555566677777777654445678999988889999899999988888877766543 1 246777753
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.- +-.=+-.+++-..+.|++.+.+
T Consensus 137 ~~--st~eai~la~~A~~~Gadavlv 160 (360)
T 4dpp_A 137 SN--STREAIHATEQGFAVGMHAALH 160 (360)
T ss_dssp CS--SHHHHHHHHHHHHHTTCSEEEE
T ss_pred CC--CHHHHHHHHHHHHHcCCCEEEE
Confidence 32 3333344567778899997766
No 43
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=45.12 E-value=70 Score=28.47 Aligned_cols=93 Identities=18% Similarity=0.083 Sum_probs=62.9
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+. .+..++.+...++-+-.-..|+.|++--|..|+..-||.+.-.++.+...+..... ...|++|--
T Consensus 17 vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~----------rvpviaGvg 85 (301)
T 3m5v_A 17 ITPF-KNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGT----------KVKVLAGAG 85 (301)
T ss_dssp CCCE-ETTEECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTS----------SCEEEEECC
T ss_pred ecCc-CCCCCCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCC----------CCeEEEeCC
Confidence 3455 45567777777765444567899998888899989999998888888877665320 246777643
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.- +-.=+-.+++-..+.|++.+.+
T Consensus 86 ~~--~t~~ai~la~~a~~~Gadavlv 109 (301)
T 3m5v_A 86 SN--ATHEAVGLAKFAKEHGADGILS 109 (301)
T ss_dssp CS--SHHHHHHHHHHHHHTTCSEEEE
T ss_pred CC--CHHHHHHHHHHHHHcCCCEEEE
Confidence 32 2333344566677888887766
No 44
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=45.10 E-value=48 Score=29.74 Aligned_cols=92 Identities=13% Similarity=0.071 Sum_probs=61.2
Q ss_pred cccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecC
Q 023423 55 VTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP 134 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~ 134 (282)
|+.+.+..++.+.+.++-.-.-..|+.|++--|..|+...||.+.-.++.+...+... + ...|++|--.
T Consensus 24 TPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-------g----r~pviaGvg~ 92 (307)
T 3s5o_A 24 TPFTATAEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMP-------K----NRLLLAGSGC 92 (307)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSC-------T----TSEEEEECCC
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcC-------C----CCcEEEecCC
Confidence 4445566677777776644445678999988888888889999988888777655432 1 2457666433
Q ss_pred CCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 135 RVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 135 R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
- +-.=+-.+++-..+.|++.+.+
T Consensus 93 ~--~t~~ai~la~~A~~~Gadavlv 115 (307)
T 3s5o_A 93 E--STQATVEMTVSMAQVGADAAMV 115 (307)
T ss_dssp S--SHHHHHHHHHHHHHTTCSEEEE
T ss_pred C--CHHHHHHHHHHHHHcCCCEEEE
Confidence 2 2222345567778889998766
No 45
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=45.00 E-value=72 Score=28.25 Aligned_cols=92 Identities=16% Similarity=0.097 Sum_probs=62.4
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+.+ +..++.+...++-.-.-..|+.|++--|..|+..-||.+.-.++.+...+.... ...|++|-=
T Consensus 10 vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------rvpviaGvg 77 (294)
T 2ehh_A 10 ITPFK-EGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAG-----------RIKVIAGTG 77 (294)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSEEEEECC
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-----------CCcEEEecC
Confidence 35556 677777777776554456789999888888998899999888888887766431 245776653
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.-.+.+ +-.+++-..+.|++.+.+
T Consensus 78 ~~~t~~--ai~la~~A~~~Gadavlv 101 (294)
T 2ehh_A 78 GNATHE--AVHLTAHAKEVGADGALV 101 (294)
T ss_dssp CSCHHH--HHHHHHHHHHTTCSEEEE
T ss_pred CCCHHH--HHHHHHHHHhcCCCEEEE
Confidence 322222 333456667788887655
No 46
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=44.85 E-value=77 Score=25.14 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEe-ccCChH
Q 023423 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (282)
Q Consensus 94 dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dl-G~~pTP 165 (282)
.-||..+...++.++..+.+. |. ....|.| +.. -.+ .++++.+|...|++|..+ ..+|.|
T Consensus 55 k~tp~AA~~aa~~~~~~~~~~-----Gi--~~v~V~v-kG~-G~G---re~airaL~~~Gl~I~~I~DvTpiP 115 (129)
T 2vqe_K 55 KGTPYAAQLAALDAAKKAMAY-----GM--QSVDVIV-RGT-GAG---REQAIRALQASGLQVKSIVDDTPVP 115 (129)
T ss_dssp GGSHHHHHHHHHHHHHHHHTT-----TC--CEEEEEE-ESC-CTT---HHHHHHHHHTSSSEEEECEECCCCC
T ss_pred cCCHHHHHHHHHHHHHHHHHh-----CC--eEEEEEE-ECC-CCC---HHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 789999999999999988764 31 1123333 222 223 457889999999999988 666665
No 47
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=44.43 E-value=54 Score=30.00 Aligned_cols=93 Identities=17% Similarity=0.087 Sum_probs=62.9
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+.+.+..++.+.+.++-.-.-..|+.|++--|..|+..-||.+.-.++.+...+.... ...|++|-=
T Consensus 40 vTPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~g-----------rvpViaGvg 108 (343)
T 2v9d_A 40 STIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDR-----------RVPVLIGTG 108 (343)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSCEEEECC
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCC-----------CCcEEEecC
Confidence 455566677788877776554456789999888888888899999888888887766531 245777643
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.-.+.+ +-.+++-..+.|++.+.+
T Consensus 109 ~~st~e--ai~la~~A~~~Gadavlv 132 (343)
T 2v9d_A 109 GTNARE--TIELSQHAQQAGADGIVV 132 (343)
T ss_dssp SSCHHH--HHHHHHHHHHHTCSEEEE
T ss_pred CCCHHH--HHHHHHHHHhcCCCEEEE
Confidence 322222 334456667778887655
No 48
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=42.06 E-value=69 Score=28.79 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=64.7
Q ss_pred Cccc-ccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEe
Q 023423 54 SVTD-KYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGK 132 (282)
Q Consensus 54 ~~~~-~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~ 132 (282)
.|+. +.+..++.+...++-.-.-..|+.|++--|..|+..-||.+.-.++.+...+... | ...|++|-
T Consensus 20 vTPF~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~-------g----rvpViaGv 88 (314)
T 3d0c_A 20 IVPFLEGTREIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVN-------G----RATVVAGI 88 (314)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHT-------T----SSEEEEEE
T ss_pred eccccCCCCCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhC-------C----CCeEEecC
Confidence 3454 5566777777777654445678999988888888889999998888888776653 1 24688777
Q ss_pred cCCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 133 DPRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 133 D~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
=. .+.. +-.+++-..+.|++.+.+
T Consensus 89 g~-st~~--ai~la~~A~~~Gadavlv 112 (314)
T 3d0c_A 89 GY-SVDT--AIELGKSAIDSGADCVMI 112 (314)
T ss_dssp CS-SHHH--HHHHHHHHHHTTCSEEEE
T ss_pred Cc-CHHH--HHHHHHHHHHcCCCEEEE
Confidence 55 3333 344566778899998766
No 49
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=41.52 E-value=57 Score=29.67 Aligned_cols=95 Identities=15% Similarity=0.074 Sum_probs=62.9
Q ss_pred ccCcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEE
Q 023423 52 KSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLG 131 (282)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG 131 (282)
-..|+.+.+..++.+...++-.-.-..|+.|++--|..|+..-||.+.-.++.+...+.... ...|++|
T Consensus 41 a~vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~g-----------rvpViaG 109 (332)
T 2r8w_A 41 FPITPADEAGRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRG-----------RRTLMAG 109 (332)
T ss_dssp CCCCCBCTTCCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSEEEEE
T ss_pred EeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-----------CCcEEEe
Confidence 34466666777888877776554456789999888888998899999988888887766531 2456666
Q ss_pred ecCCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 132 KDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 132 ~D~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
-=.-.+.+ +-.+++-..+.|++.+.+
T Consensus 110 vg~~st~e--ai~la~~A~~~Gadavlv 135 (332)
T 2r8w_A 110 IGALRTDE--AVALAKDAEAAGADALLL 135 (332)
T ss_dssp ECCSSHHH--HHHHHHHHHHHTCSEEEE
T ss_pred cCCCCHHH--HHHHHHHHHhcCCCEEEE
Confidence 53322222 223455556667776655
No 50
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=41.28 E-value=59 Score=29.20 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=62.4
Q ss_pred cCcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEe
Q 023423 53 SSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGK 132 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~ 132 (282)
..|+.+.+..++.+...++-+-.-..|+.|++--|..|+..-||.+.=.++.+...+.. . ...|++|-
T Consensus 16 ~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-g-----------rvpViaGv 83 (313)
T 3dz1_A 16 APTPFHDDGKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-K-----------SMQVIVGV 83 (313)
T ss_dssp CCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-T-----------TSEEEEEC
T ss_pred eeCCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-C-----------CCcEEEec
Confidence 34555666677777777765544567899988888888888999998888888776654 2 14577764
Q ss_pred cCCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 133 DPRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 133 D~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
=.-.+.. +-.+++-..+.|++.+.+
T Consensus 84 g~~~t~~--ai~la~~A~~~Gadavlv 108 (313)
T 3dz1_A 84 SAPGFAA--MRRLARLSMDAGAAGVMI 108 (313)
T ss_dssp CCSSHHH--HHHHHHHHHHHTCSEEEE
T ss_pred CCCCHHH--HHHHHHHHHHcCCCEEEE
Confidence 3322222 333456667778887765
No 51
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=40.72 E-value=71 Score=28.24 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=61.1
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+.+ +..++.+...++-.-.-..|+.|++--|..|+..-||.+.-.++.+...+.... ...|++|-=
T Consensus 10 vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------r~pviaGvg 77 (289)
T 2yxg_A 10 ITPFK-NKEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNG-----------RVQVIAGAG 77 (289)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSEEEEECC
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-----------CCcEEEeCC
Confidence 35556 677777777776544456789999888888898899999888888877766431 245666653
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.-.+.+ +-.+++-..+.|++.+.+
T Consensus 78 ~~~t~~--ai~la~~a~~~Gadavlv 101 (289)
T 2yxg_A 78 SNCTEE--AIELSVFAEDVGADAVLS 101 (289)
T ss_dssp CSSHHH--HHHHHHHHHHHTCSEEEE
T ss_pred CCCHHH--HHHHHHHHHhcCCCEEEE
Confidence 322222 333455567778886655
No 52
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=40.66 E-value=75 Score=25.22 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=30.4
Q ss_pred CeEEEEecCCC-ChHHHHHHHHHHHHHCCCcEEEeccCC
Q 023423 126 VKVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDMGLAT 163 (282)
Q Consensus 126 ~~VvVG~D~R~-sS~~la~ala~gL~s~Gv~V~dlG~~p 163 (282)
.+|+|-|.... +.+.++++++++|.+.|++|..+.+..
T Consensus 5 ~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~ 43 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGA 43 (159)
T ss_dssp CEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcC
Confidence 57888888875 789999999999999998875554433
No 53
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=40.65 E-value=45 Score=29.66 Aligned_cols=92 Identities=18% Similarity=0.061 Sum_probs=62.2
Q ss_pred cccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecC
Q 023423 55 VTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP 134 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~ 134 (282)
|+.+.+..++.+.+.++-.-.-..|+.|++--|..|+...||.+.-.++.+...+... | ...|++|-=.
T Consensus 13 TPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-------g----r~pviaGvg~ 81 (294)
T 3b4u_A 13 TPFKTDGTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGI-------A----PSRIVTGVLV 81 (294)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTC-------C----GGGEEEEECC
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-------C----CCcEEEeCCC
Confidence 4445566777777777654445678999988888888889999988888777755432 1 2357777543
Q ss_pred CCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 135 RVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 135 R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
-.+.+ +-.+++-..+.|++.+.+
T Consensus 82 ~~t~~--ai~la~~A~~~Gadavlv 104 (294)
T 3b4u_A 82 DSIED--AADQSAEALNAGARNILL 104 (294)
T ss_dssp SSHHH--HHHHHHHHHHTTCSEEEE
T ss_pred ccHHH--HHHHHHHHHhcCCCEEEE
Confidence 22222 344566678889997766
No 54
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=39.22 E-value=81 Score=28.16 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=64.3
Q ss_pred cccCcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEE
Q 023423 51 VKSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSL 130 (282)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvV 130 (282)
+-..|+.+ +..++.+...++-.-.-..|+.|++--|..|+..-||.+.-.++.+...+.... ...|++
T Consensus 19 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~g-----------rvpVia 86 (306)
T 1o5k_A 19 TAIVTPFK-NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDG-----------KIPVIV 86 (306)
T ss_dssp EECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTT-----------SSCEEE
T ss_pred eeeecCcC-CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCC-----------CCeEEE
Confidence 33456666 777888877776544446688898877888888899999988888887766531 245777
Q ss_pred EecCCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 131 GKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 131 G~D~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
|-=.-.+.+ +-.+++-..+.|++.+.+
T Consensus 87 Gvg~~st~~--ai~la~~A~~~Gadavlv 113 (306)
T 1o5k_A 87 GAGTNSTEK--TLKLVKQAEKLGANGVLV 113 (306)
T ss_dssp ECCCSCHHH--HHHHHHHHHHHTCSEEEE
T ss_pred cCCCccHHH--HHHHHHHHHhcCCCEEEE
Confidence 753322222 333456667789887765
No 55
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=38.40 E-value=65 Score=29.04 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=63.2
Q ss_pred cccc-cccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 55 VTDK-YNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 55 ~~~~-~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
|+.+ .+..++.+...++-+-.-..|+.|++--|..|+...||.+.=.++.+...+... | ...|++|--
T Consensus 20 TPf~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-------g----rvpviaGvg 88 (318)
T 3qfe_A 20 TFFDSKTDTLDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVG-------P----DFPIMAGVG 88 (318)
T ss_dssp CCEETTTTEECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHC-------T----TSCEEEECC
T ss_pred CCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhC-------C----CCcEEEeCC
Confidence 4445 566777777777654444678899888888888889999988888887766653 1 246777753
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.- +-.=+-.+++-..+.|++.+.+
T Consensus 89 ~~--~t~~ai~la~~a~~~Gadavlv 112 (318)
T 3qfe_A 89 AH--STRQVLEHINDASVAGANYVLV 112 (318)
T ss_dssp CS--SHHHHHHHHHHHHHHTCSEEEE
T ss_pred CC--CHHHHHHHHHHHHHcCCCEEEE
Confidence 33 3333444566677889997766
No 56
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=38.08 E-value=81 Score=28.24 Aligned_cols=93 Identities=12% Similarity=0.047 Sum_probs=63.5
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+.+.+..++.+...++-+-.-..|+.|++--|..|+..-||.+.=.++.+...+... | ...|++|-=
T Consensus 17 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-------g----rvpviaGvg 85 (309)
T 3fkr_A 17 PTTFADTGDLDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVA-------G----RVPVIVTTS 85 (309)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-------T----SSCEEEECC
T ss_pred eCCCCcCCCcCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhC-------C----CCcEEEecC
Confidence 34445566677777777654445678999888888888899999998888888766653 1 246777753
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.-.+.+ +-.+++-..+.|++.+.+
T Consensus 86 ~~~t~~--ai~la~~A~~~Gadavlv 109 (309)
T 3fkr_A 86 HYSTQV--CAARSLRAQQLGAAMVMA 109 (309)
T ss_dssp CSSHHH--HHHHHHHHHHTTCSEEEE
T ss_pred CchHHH--HHHHHHHHHHcCCCEEEE
Confidence 322222 334566678889998766
No 57
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=37.45 E-value=53 Score=29.12 Aligned_cols=93 Identities=9% Similarity=0.096 Sum_probs=62.4
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+.+.+..++.+...++-.-.-..|+.|++--|..|+..-||.+.-.++.+...+.... ...|++|-=
T Consensus 10 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------r~pviaGvg 78 (292)
T 2ojp_A 10 VTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADG-----------RIPVIAGTG 78 (292)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSCEEEECC
T ss_pred eccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCC-----------CCcEEEecC
Confidence 345555667777777776554456789999888888998899999888888887766531 245777653
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.-.+.+ +-.+++-..+.|++.+.+
T Consensus 79 ~~~t~~--ai~la~~a~~~Gadavlv 102 (292)
T 2ojp_A 79 ANATAE--AISLTQRFNDSGIVGCLT 102 (292)
T ss_dssp CSSHHH--HHHHHHHTTTSSCSEEEE
T ss_pred CccHHH--HHHHHHHHHhcCCCEEEE
Confidence 322222 233455667788886655
No 58
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=36.70 E-value=49 Score=26.73 Aligned_cols=57 Identities=28% Similarity=0.261 Sum_probs=36.8
Q ss_pred CCeEEEEe---cCCCChHHHHHHHHHHHHHCCCcEEEecc-CChHHHHHHhhcCCCCCCeEEEEecc
Q 023423 125 DVKVSLGK---DPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMMTAS 187 (282)
Q Consensus 125 ~~~VvVG~---D~R~sS~~la~ala~gL~s~Gv~V~dlG~-~pTP~l~fav~~~~~~a~gGImITAS 187 (282)
..+|+++. |.+.-+..+ ++..|...|++|+++|. +|...+--++. +.+++ -|.++++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~---va~~l~~~G~eVi~lG~~~p~e~lv~aa~--~~~~d-iV~lS~~ 78 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKV---VARALRDAGFEVVYTGLRQTPEQVAMAAV--QEDVD-VIGVSIL 78 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHH---HHHHHHHTTCEEECCCSBCCHHHHHHHHH--HTTCS-EEEEEES
T ss_pred CCEEEEEeCCCCccHHHHHH---HHHHHHHCCCEEEECCCCCCHHHHHHHHH--hcCCC-EEEEEee
Confidence 35777764 777766554 45568999999999985 55555554544 34443 4555554
No 59
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=36.65 E-value=53 Score=24.23 Aligned_cols=55 Identities=13% Similarity=0.283 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCC--ChHHHHHHHHHHHHHCCCcEEEe
Q 023423 96 TPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRV--SGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 96 Tpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~--sS~~la~ala~gL~s~Gv~V~dl 159 (282)
|+....++-.-+-.|++++ | .++|-|.--+|. -++.|+..++..++..|.+-+++
T Consensus 25 teselqkvlnelmdyikkq-----g----akrvrisitartkkeaekfaailikvfaelgyndinv 81 (106)
T 1qys_A 25 TESELQKVLNELMDYIKKQ-----G----AKRVRISITARTKKEAEKFAAILIKVFAELGYNDINV 81 (106)
T ss_dssp SSSHHHHHHHHHHHHHHHH-----C----CSEEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eHHHHHHHHHHHHHHHHhc-----C----CcEEEEEEEecchhHHHHHHHHHHHHHHHhCCcceeE
Confidence 3446677777788888876 4 356666666665 58889999999999999987765
No 60
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=35.75 E-value=71 Score=28.30 Aligned_cols=93 Identities=12% Similarity=0.070 Sum_probs=60.6
Q ss_pred Ccccccccccchhhhhhccccccc-cceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEe
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNG-SDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGK 132 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~g-tdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~ 132 (282)
.|+.+.+..++.+...++-.-.-. .|+.|++--|..|+..-||.+.-.++.+...+.... ...|++|-
T Consensus 12 vTPf~~dg~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------rvpviaGv 80 (293)
T 1f6k_A 12 LVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD-----------QIALIAQV 80 (293)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-----------SSEEEEEC
T ss_pred EcCCCCCCCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCC-----------CCeEEEec
Confidence 344455667777777776544445 788888877888888899999888888877766431 24576665
Q ss_pred cCCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 133 DPRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 133 D~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
=.-.+.+ +-.+++-..+.|++.+.+
T Consensus 81 g~~~t~~--ai~la~~a~~~Gadavlv 105 (293)
T 1f6k_A 81 GSVNLKE--AVELGKYATELGYDCLSA 105 (293)
T ss_dssp CCSCHHH--HHHHHHHHHHHTCSEEEE
T ss_pred CCCCHHH--HHHHHHHHHhcCCCEEEE
Confidence 3322222 233455567778886655
No 61
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=33.74 E-value=44 Score=29.84 Aligned_cols=93 Identities=19% Similarity=0.083 Sum_probs=60.5
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+.+.+..++.+...++-+-.-..|+.|++--|..|+...||.+.=.++.+...+.... ...|++|--
T Consensus 13 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------rvpviaGvg 81 (300)
T 3eb2_A 13 VSPVDAEGRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQR-----------RVPVVAGVA 81 (300)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTT-----------SSCBEEEEE
T ss_pred eccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCC-----------CCcEEEeCC
Confidence 455556667777777776544456789998888888888899999888888887766532 134665543
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.-.+.+ +-.+++-..+.|++.+.+
T Consensus 82 ~~~t~~--ai~la~~a~~~Gadavlv 105 (300)
T 3eb2_A 82 STSVAD--AVAQAKLYEKLGADGILA 105 (300)
T ss_dssp ESSHHH--HHHHHHHHHHHTCSEEEE
T ss_pred CCCHHH--HHHHHHHHHHcCCCEEEE
Confidence 222222 233345556678876655
No 62
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=32.84 E-value=52 Score=26.53 Aligned_cols=65 Identities=22% Similarity=0.294 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEE----ecCCCChHHHHHHHHHHHHHCCCcEEEe-ccCChH
Q 023423 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLG----KDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (282)
Q Consensus 93 ~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG----~D~R~sS~~la~ala~gL~s~Gv~V~dl-G~~pTP 165 (282)
.+-||..+...++.++....+. |. +...|.|- .-..--++ =.++++.+|...|++|..+ ..+|.|
T Consensus 53 ~ksTpyAAq~aa~~~a~~a~e~-----Gi--~~v~V~vra~gg~~~kgpG~-Gr~sairaL~~~Gl~I~~I~DvTpiP 122 (137)
T 3u5c_O 53 DESSPYAAMLAAQDVAAKCKEV-----GI--TAVHVKIRATGGTRTKTPGP-GGQAALRALARSGLRIGRIEDVTPVP 122 (137)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHH-----TC--CEEECEEECSCTTSCCSCCG-GGHHHHHHHHTTTCEECCCEECCCCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHc-----CC--eEEEEEEeccCCCcccCCCc-chHHHHHHHHhCCCEEEEEEEcCCCC
Confidence 3689999999999999887765 31 12234441 11122222 2677888999999999877 666665
No 63
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=31.73 E-value=1e+02 Score=27.66 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=60.7
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+.+.+..++.+.+.++-+-.-..|+.|++--|..|+...||.+.-.++.....+... | ...|++|--
T Consensus 16 vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-------g----rvpViaGvg 84 (311)
T 3h5d_A 16 ITPFHEDGSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVN-------G----RVPLIAGVG 84 (311)
T ss_dssp CCCBCTTSSBCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSC-------S----SSCEEEECC
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-------C----CCcEEEeCC
Confidence 34455566677777777654444778999988888999889999988888777765532 1 245777643
Q ss_pred CCCChHHHHHHHHHHHHHCCC-cEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGC-LVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv-~V~dl 159 (282)
.- +-.=+-.+++-..+.|. +.+.+
T Consensus 85 ~~--~t~~ai~la~~A~~~Ga~davlv 109 (311)
T 3h5d_A 85 TN--DTRDSIEFVKEVAEFGGFAAGLA 109 (311)
T ss_dssp CS--SHHHHHHHHHHHHHSCCCSEEEE
T ss_pred Cc--CHHHHHHHHHHHHhcCCCcEEEE
Confidence 22 22223444566677775 76554
No 64
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=29.07 E-value=1.2e+02 Score=26.77 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=60.5
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+. .+..++.+...++-+-.-..|+.|++--|..|+..-||.+.-.++.+...+.... ...|++|-=
T Consensus 10 vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------r~pviaGvg 77 (292)
T 2vc6_A 10 VTPF-ADDRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANG-----------RVPVIAGAG 77 (292)
T ss_dssp CCCE-ETTEECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTT-----------SSCBEEECC
T ss_pred ecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-----------CCcEEEecC
Confidence 3445 5566777777776544456789999888888888899999988888887766531 235666653
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.-.+.+ +-.+++-..+.|++.+.+
T Consensus 78 ~~~t~~--ai~la~~A~~~Gadavlv 101 (292)
T 2vc6_A 78 SNSTAE--AIAFVRHAQNAGADGVLI 101 (292)
T ss_dssp CSSHHH--HHHHHHHHHHTTCSEEEE
T ss_pred CccHHH--HHHHHHHHHHcCCCEEEE
Confidence 322222 333455667788886655
No 65
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=28.38 E-value=1e+02 Score=27.37 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=57.2
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+. .+..++.+.+.++-.-.-..|+.|++--|..|+..-||.+.-.++.+...+.... ...|++|-=
T Consensus 10 vTPf-~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------rvpviaGvg 77 (297)
T 2rfg_A 10 ITPF-INGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQG-----------RVPVIAGAG 77 (297)
T ss_dssp CCCE-ETTEECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTT-----------SSCBEEECC
T ss_pred ecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCC-----------CCeEEEccC
Confidence 3455 5566777777666544446788998887888888889999888888877766532 134555543
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.-.+.+ +-.+++-..+.|++.+.+
T Consensus 78 ~~~t~~--ai~la~~A~~~Gadavlv 101 (297)
T 2rfg_A 78 SNNPVE--AVRYAQHAQQAGADAVLC 101 (297)
T ss_dssp CSSHHH--HHHHHHHHHHHTCSEEEE
T ss_pred CCCHHH--HHHHHHHHHhcCCCEEEE
Confidence 222222 223344455666665544
No 66
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=28.24 E-value=69 Score=24.11 Aligned_cols=41 Identities=10% Similarity=-0.015 Sum_probs=33.2
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCChHH
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPA 166 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~ 166 (282)
++|+|+.|....|....+..+.-....|.++..+.+.+.+.
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~ 47 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIP 47 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC---
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCcc
Confidence 68999999999999988888887788899998887666543
No 67
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=27.81 E-value=94 Score=26.91 Aligned_cols=86 Identities=19% Similarity=0.036 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHHHHH---hhccccCCCCCCCCeEEEEe---cCCCChHHHHHHHHHHHHHCCCcEEEec-cCChHH
Q 023423 94 DLTPSAVEAIAESFGEWVI---RSLENERGRPVEDVKVSLGK---DPRVSGPSLSVAVFAGLARAGCLVFDMG-LATTPA 166 (282)
Q Consensus 94 dLTpe~v~~ig~A~g~~l~---~~~~~~~g~~~~~~~VvVG~---D~R~sS~~la~ala~gL~s~Gv~V~dlG-~~pTP~ 166 (282)
+++...+...+..+-..+. ...... .....+|+++. |.+.-+ +..++..|...|++|+++| .+|...
T Consensus 92 ~~~v~~~~~~~~~~~~~l~~l~~~~~~~---~~~~~~vlla~~~gd~HdiG---~~iva~~L~~~G~~Vi~LG~~vp~e~ 165 (258)
T 2i2x_B 92 VIFLPNVMMSADAMLEGIEYCKENSGAT---PKTKGTVVCHVAEGDVHDIG---KNIVTALLRANGYNVVDLGRDVPAEE 165 (258)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTTTSSC---CCCSCEEEEEECTTCCCCHH---HHHHHHHHHHTTCEEEEEEEECCSHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhccc---cCCCCeEEEEeCCCCccHHH---HHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 5666666666655544443 221110 01245788775 544444 4555667899999999997 456666
Q ss_pred HHHHhhcCCCCCCeEEEEeccC
Q 023423 167 CFMSTLLPPFAYDASIMMTASH 188 (282)
Q Consensus 167 l~fav~~~~~~a~gGImITASH 188 (282)
+--++. +.+. ..|.++++.
T Consensus 166 l~~~~~--~~~~-d~V~lS~l~ 184 (258)
T 2i2x_B 166 VLAAVQ--KEKP-IMLTGTALM 184 (258)
T ss_dssp HHHHHH--HHCC-SEEEEECCC
T ss_pred HHHHHH--HcCC-CEEEEEeec
Confidence 655554 3333 456666653
No 68
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=27.33 E-value=1.1e+02 Score=25.18 Aligned_cols=56 Identities=21% Similarity=0.241 Sum_probs=37.1
Q ss_pred CeEEEEe---cCCCChHHHHHHHHHHHHHCCCcEEEecc-CChHHHHHHhhcCCCCCCeEEEEecc
Q 023423 126 VKVSLGK---DPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMMTAS 187 (282)
Q Consensus 126 ~~VvVG~---D~R~sS~~la~ala~gL~s~Gv~V~dlG~-~pTP~l~fav~~~~~~a~gGImITAS 187 (282)
.+|+++. |.+.-+ +..++..|...|++|+++|. +|...+--++. +.+. ..|.++++
T Consensus 89 ~~vll~~~~gd~H~iG---~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~--~~~~-d~v~lS~~ 148 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIG---KNLVAMMLESGGFTVYNLGVDIEPGKFVEAVK--KYQP-DIVGMSAL 148 (210)
T ss_dssp CEEEEEEBTTCCCCHH---HHHHHHHHHHTTCEEEECCSSBCHHHHHHHHH--HHCC-SEEEEECC
T ss_pred CEEEEEeCCCcccHHH---HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCC-CEEEEecc
Confidence 5788876 444444 45667778999999999975 55556655554 3343 35667765
No 69
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=26.96 E-value=1.4e+02 Score=23.13 Aligned_cols=60 Identities=25% Similarity=0.373 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEe-ccCChH
Q 023423 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (282)
Q Consensus 94 dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dl-G~~pTP 165 (282)
.-||..+...++..+....+. |. +.-.|.| +..-+ + .++++.+|...|++|..+ ..+|.|
T Consensus 45 k~tp~AA~~aa~~~~~~~~~~-----Gi--~~v~v~v-kG~G~-G---r~~airaL~~~Gl~I~~I~DvTpip 105 (117)
T 3r8n_K 45 KSTPFAAQVAAERCADAVKEY-----GI--KNLEVMV-KGPGP-G---RESTIRALNAAGFRITNITDVTPIP 105 (117)
T ss_dssp GSSHHHHHHHHHHHHHHHTTS-----CC--CEEEEEE-ECSSS-S---TTHHHHHHHHTTCEEEEEEECCCCC
T ss_pred cCCHHHHHHHHHHHHHHHHHh-----CC--cEEEEEE-eCCCc-c---HHHHHHHHHhCCCEEEEEEEeCCCC
Confidence 689999999998888877653 31 1223444 22211 1 446777888999999988 677765
No 70
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=26.13 E-value=1.5e+02 Score=23.38 Aligned_cols=32 Identities=28% Similarity=0.219 Sum_probs=24.4
Q ss_pred EEEEecCC-CChHHHHHHHHHHHHHCCCcEEEe
Q 023423 128 VSLGKDPR-VSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 128 VvVG~D~R-~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
|+|-|... -+.+.++++++++|.+.|++|..+
T Consensus 3 v~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~ 35 (161)
T 3hly_A 3 VLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMV 35 (161)
T ss_dssp EEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhCCCeEEEE
Confidence 55666655 478899999999999999876444
No 71
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=25.87 E-value=68 Score=23.81 Aligned_cols=40 Identities=5% Similarity=-0.132 Sum_probs=33.3
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccC-Ch-H
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA-TT-P 165 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~-pT-P 165 (282)
++|+|+.|....|....+..+.-....|.++..+.+. +. |
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~ 46 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYN 46 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEeccccc
Confidence 5899999999999888777777777789999988877 65 5
No 72
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=25.09 E-value=38 Score=26.52 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=34.1
Q ss_pred CeEEEEe---cCCCChHHHHHHHHHHHHHCCCcEEEecc-CChHHHHHHhhcCCCCCCeEEEEecc
Q 023423 126 VKVSLGK---DPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMMTAS 187 (282)
Q Consensus 126 ~~VvVG~---D~R~sS~~la~ala~gL~s~Gv~V~dlG~-~pTP~l~fav~~~~~~a~gGImITAS 187 (282)
.+|+++. |.+.-+. ..++..|...|++|+++|. +|...+--++. +.+++ -|.++++
T Consensus 4 ~~vvla~~~~d~HdiG~---~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~--~~~~d-~v~lS~~ 63 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGN---KILDHAFTNAGFNVVNIGVLSPQELFIKAAI--ETKAD-AILVSSL 63 (137)
T ss_dssp CEEEEEEETTCCCCHHH---HHHHHHHHHTTCEEEEEEEEECHHHHHHHHH--HHTCS-EEEEEEC
T ss_pred CEEEEEeCCCchhHHHH---HHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--hcCCC-EEEEEec
Confidence 4566554 6555554 3556788999999999975 55555554444 33433 3455553
No 73
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=24.06 E-value=90 Score=23.13 Aligned_cols=37 Identities=11% Similarity=0.019 Sum_probs=30.4
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccC
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA 162 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~ 162 (282)
++|+|+.|....|....+..+.-....|.++..+-+.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~ 39 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVD 39 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 5799999999999888777777777778888877655
No 74
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=24.02 E-value=51 Score=24.67 Aligned_cols=43 Identities=5% Similarity=-0.052 Sum_probs=36.0
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHH
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACF 168 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~ 168 (282)
++|+|+.|....|....+..+.-....|.++..+.+.+.|...
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~ 45 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLL 45 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccc
Confidence 5799999999998888888777777789999999888877643
No 75
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=23.87 E-value=1.1e+02 Score=26.86 Aligned_cols=90 Identities=6% Similarity=-0.044 Sum_probs=57.8
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+.+.+..++.+.+.++-.-.-..|+.|++--|..|+..-||.+.-.++.+...+.. + . |++|-=
T Consensus 8 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~--------~-----g-ViaGvg 73 (288)
T 2nuw_A 8 ITPFDKQGKVNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVT--------H-----K-LIFQVG 73 (288)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTC--------S-----C-EEEECC
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHh--------C-----C-eEEeeC
Confidence 3455556677777777765444467899998888888888899998887776654321 1 2 655542
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
. . +-.=+-.+++-..+.|++.+.+
T Consensus 74 ~-~-~t~~ai~la~~A~~~Gadavlv 97 (288)
T 2nuw_A 74 S-L-NLNDVMELVKFSNEMDILGVSS 97 (288)
T ss_dssp C-S-CHHHHHHHHHHHHTSCCSEEEE
T ss_pred C-C-CHHHHHHHHHHHHhcCCCEEEE
Confidence 2 2 2222334566667788887655
No 76
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=23.64 E-value=2.3e+02 Score=23.29 Aligned_cols=73 Identities=15% Similarity=0.004 Sum_probs=52.1
Q ss_pred eEEEEec------CCCChHHHHHHHHHHHHHCCCcEEEeccCChHHHHHHhhc-----CCCCCCeEEEEeccCCCCCCce
Q 023423 127 KVSLGKD------PRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLL-----PPFAYDASIMMTASHLPYTRNG 195 (282)
Q Consensus 127 ~VvVG~D------~R~sS~~la~ala~gL~s~Gv~V~dlG~~pTP~l~fav~~-----~~~~a~gGImITASHNP~~~NG 195 (282)
-++|+.. .|..+..=++++...|...|++|....-.+.-.+.-++.. .+.++++.+++=+||--.. +
T Consensus 46 ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f~~~~d~~~~d~~v~~~lsHG~~g--~ 123 (178)
T 2h54_A 46 ALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIRE--G 123 (178)
T ss_dssp EEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTCGGGGGCSCEEEEEESCBCSS--C
T ss_pred EEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEecCCCCC--e
Confidence 4778877 6888999999999999999999998765565555543320 1235678899999996442 2
Q ss_pred EEEeeCCC
Q 023423 196 LKFFTKKG 203 (282)
Q Consensus 196 iK~~~~~G 203 (282)
++..++
T Consensus 124 --i~g~D~ 129 (178)
T 2h54_A 124 --ICGKKH 129 (178)
T ss_dssp --EECTTC
T ss_pred --EEeecC
Confidence 555565
No 77
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=23.49 E-value=1.8e+02 Score=25.45 Aligned_cols=89 Identities=11% Similarity=-0.008 Sum_probs=59.6
Q ss_pred CcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec
Q 023423 54 SVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD 133 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D 133 (282)
.|+.+ +..++.+...++-.-.-..|+.|++--|..|+...||.+.-.++.+...+.. + . |++|-=
T Consensus 8 vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~--------~-----g-vi~Gvg 72 (286)
T 2r91_A 8 ITTFR-GGRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAA--------R-----R-VIVQVA 72 (286)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHC--------S-----S-EEEECC
T ss_pred ecCcC-CCccCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHh--------C-----C-EEEeeC
Confidence 35556 6777777777765444567899998888888888999998888777765442 1 2 666653
Q ss_pred CCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 134 PRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 134 ~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
.-.+ .=+-.+++-..+.|++.+.+
T Consensus 73 ~~~t--~~ai~la~~A~~~Gadavlv 96 (286)
T 2r91_A 73 SLNA--DEAIALAKYAESRGAEAVAS 96 (286)
T ss_dssp CSSH--HHHHHHHHHHHHTTCSEEEE
T ss_pred CCCH--HHHHHHHHHHHhcCCCEEEE
Confidence 2222 22334566677889887766
No 78
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.11 E-value=2.4e+02 Score=22.56 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecC-----CCChHHHHHHHHHHHHHCCCcEEEe-ccCChH
Q 023423 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP-----RVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (282)
Q Consensus 93 ~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~-----R~sS~~la~ala~gL~s~Gv~V~dl-G~~pTP 165 (282)
..-||..+...++.++..+.+. |. ....|.| +-. +.-++ -.++++.+|...|++|..+ ..+|.|
T Consensus 53 ~ksTp~AA~~aa~~~~~~a~e~-----Gi--~~v~V~v-kG~gg~~~~~pG~-GresairaL~~~Gl~I~~I~DvTpiP 122 (137)
T 3j20_M 53 DEPSPYAAMLAARRAAEEALEK-----GI--VGVHIRV-RAPGGSKSKTPGP-GAQAAIRALARAGLKIGRVEDVTPIP 122 (137)
T ss_dssp TSSSHHHHHHHHHHHHHHHHHH-----TE--EEEEEEE-ECCCSSSCCSCCT-HHHHHHHHHHHHTCEEEEEEECCCCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHc-----CC--eEEEEEE-ECCCCCCCcCCCC-cHHHHHHHHHhCCCEEEEEEEcCCCC
Confidence 4689999999999999888765 31 1123444 221 22222 3667788899999999988 677766
No 79
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=21.37 E-value=2.2e+02 Score=25.96 Aligned_cols=91 Identities=14% Similarity=0.045 Sum_probs=59.6
Q ss_pred cCcccccccccchhhhhhccccccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEe
Q 023423 53 SSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGK 132 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~Lf~gtdIRGi~~~g~~g~~~dLTpe~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~ 132 (282)
..|+.+.+..++.+.+.++-.-.-..|+.|++--|..|+..-||.+.-.++.+. ... | ...|++|-
T Consensus 34 lvTPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~---~~~-------g----rvpViaGv 99 (344)
T 2hmc_A 34 LMTPCRQDRTPDFDALVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVER---LVK-------A----GIPVIVGT 99 (344)
T ss_dssp CCCCBCTTSSBCHHHHHHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHH---HHH-------T----TCCEEEEC
T ss_pred eeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHH---HhC-------C----CCcEEEec
Confidence 345556666777777777644444678899887788888889999988888777 222 2 24577775
Q ss_pred cCCCChHHHHHHHHHHHHHCCCcEEEe
Q 023423 133 DPRVSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 133 D~R~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
=.-.+.. +-.+++-..+.|++.+.+
T Consensus 100 g~~st~e--ai~la~~A~~~Gadavlv 124 (344)
T 2hmc_A 100 GAVNTAS--AVAHAVHAQKVGAKGLMV 124 (344)
T ss_dssp CCSSHHH--HHHHHHHHHHHTCSEEEE
T ss_pred CCCCHHH--HHHHHHHHHhcCCCEEEE
Confidence 3322222 334456667789987766
No 80
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=20.81 E-value=54 Score=24.54 Aligned_cols=39 Identities=5% Similarity=-0.038 Sum_probs=30.9
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHCCCcEEEeccCCh
Q 023423 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT 164 (282)
Q Consensus 126 ~~VvVG~D~R~sS~~la~ala~gL~s~Gv~V~dlG~~pT 164 (282)
++|+|+.|....|....+..+.-....|.++..+.+.+.
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~ 44 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDD 44 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEC
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecC
Confidence 689999999998888877777777777888887755443
No 81
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=20.33 E-value=1.6e+02 Score=22.03 Aligned_cols=31 Identities=10% Similarity=0.021 Sum_probs=23.0
Q ss_pred EEEecCC-CChHHHHHHHHHHHHHCCCcEEEe
Q 023423 129 SLGKDPR-VSGPSLSVAVFAGLARAGCLVFDM 159 (282)
Q Consensus 129 vVG~D~R-~sS~~la~ala~gL~s~Gv~V~dl 159 (282)
+|-|.+. -+.+.++++++++|.+.|++|-.+
T Consensus 2 ~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~ 33 (138)
T 5nul_A 2 KIVYWSGTGNTEKMAELIAKGIIESGKDVNTI 33 (138)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EEEEECCCchHHHHHHHHHHHHHHCCCeEEEE
Confidence 3445554 368899999999999999775444
No 82
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=20.24 E-value=76 Score=23.57 Aligned_cols=41 Identities=7% Similarity=-0.101 Sum_probs=31.9
Q ss_pred CeEEEEecCCCC--hHHHHHHHHHHHHHCCCcEEEeccCChHH
Q 023423 126 VKVSLGKDPRVS--GPSLSVAVFAGLARAGCLVFDMGLATTPA 166 (282)
Q Consensus 126 ~~VvVG~D~R~s--S~~la~ala~gL~s~Gv~V~dlG~~pTP~ 166 (282)
++|+|+.|.... |....+..+.-....|.++..+.+.+.+.
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~ 44 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLP 44 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC--
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCc
Confidence 579999999998 88777777777777899998887766653
No 83
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=20.11 E-value=3.6e+02 Score=23.88 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCC-ChHHHHHHHHHHHHHCCCcEEEecc
Q 023423 98 SAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDMGL 161 (282)
Q Consensus 98 e~v~~ig~A~g~~l~~~~~~~~g~~~~~~~VvVG~D~R~-sS~~la~ala~gL~s~Gv~V~dlG~ 161 (282)
+.+.++-..+-.|+.... ..+|+|.|-... +.+.++++++++|.+.|++|-.+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~---------~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~ 289 (402)
T 1e5d_A 234 DQCTFAVQKYVEYAEQKP---------TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWC 289 (402)
T ss_dssp HHHHHHHHHHHHHHHCCC---------CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred CCHHHHHHHHHHHhcCCC---------CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 456666667777775421 246766666654 5688999999999999976644433
Done!