Your job contains 1 sequence.
>023424
MTIRTDKSREVLEVSRFCSPEMAASLTTPLSPKFSASNGRKPSNKIQRALTAFHQKGNEC
TRTPILRREILKGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDT
PALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASP
LIRLTNKPNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETP
FALTGTHNLAKATAKGSTVVLFVASANDKQWAGVTESFENHA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023424
(282 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2102544 - symbol:PPD6 "PsbP-domain protein 6" ... 897 6.5e-90 1
TAIR|locus:2025292 - symbol:AT1G77090 species:3702 "Arabi... 172 1.6e-11 1
>TAIR|locus:2102544 [details] [associations]
symbol:PPD6 "PsbP-domain protein 6" species:3702
"Arabidopsis thaliana" [GO:0005509 "calcium ion binding"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009523 "photosystem II" evidence=IEA] [GO:0009654 "oxygen
evolving complex" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=IEA] [GO:0019898 "extrinsic to membrane" evidence=IEA]
[GO:0009543 "chloroplast thylakoid lumen" evidence=IDA] [GO:0031977
"thylakoid lumen" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0030154 "cell differentiation"
evidence=RCA] InterPro:IPR002683 Pfam:PF01789 GO:GO:0009570
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0019898 GO:GO:0005509
GO:GO:0009534 GO:GO:0031977 GO:GO:0015979 EMBL:AL163972
GO:GO:0009543 Gene3D:3.40.1000.10 InterPro:IPR016123
SUPFAM:SSF55724 GO:GO:0009654 EMBL:AK228723 IPI:IPI00516840
PIR:T49066 RefSeq:NP_191224.1 UniGene:At.34911
ProteinModelPortal:Q9LXX5 SMR:Q9LXX5 IntAct:Q9LXX5 STRING:Q9LXX5
PaxDb:Q9LXX5 PRIDE:Q9LXX5 EnsemblPlants:AT3G56650.1 GeneID:824832
KEGG:ath:AT3G56650 GeneFarm:3225 TAIR:At3g56650 eggNOG:NOG293283
HOGENOM:HOG000006084 InParanoid:Q9LXX5 OMA:WKQTRVA PhylomeDB:Q9LXX5
ProtClustDB:PLN00067 BioCyc:MetaCyc:AT3G56650-MONOMER
Genevestigator:Q9LXX5 Uniprot:Q9LXX5
Length = 262
Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
Identities = 178/259 (68%), Positives = 203/259 (78%)
Query: 22 MAASLTTPLSPKFSASNGRKPSNKIQ-RALTAFHQKGNECTRTPILRREILKGLAVIPVT 80
MA + P S FS S S K + R + A Q+ + P R +LK IP
Sbjct: 1 MATASLVPTSKIFSVSPKSSASIKARSRVVVASSQQQQQ----PRRRELLLKSAVAIPAI 56
Query: 81 LIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWK 140
L + KE P S AREVEVGSYLP SP+DPSFV FKA P DTPALRAGNVQPYQFVLPP+WK
Sbjct: 57 LQL-KEAPISAAREVEVGSYLPLSPSDPSFVLFKAKPSDTPALRAGNVQPYQFVLPPNWK 115
Query: 141 QMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPEK 200
Q+R+ANILSGNYCQPKCAEPW+EVKFE+EKQGKVQVVASPLIRLTNKPNA+IE++G PEK
Sbjct: 116 QLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNKPNATIEDLGEPEK 175
Query: 201 VIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVV 260
VIASLGPFVTGNSYD DEL++TS+EK+GDQ YY Y+LETPFALTG+HNLAKATAKGSTVV
Sbjct: 176 VIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVV 235
Query: 261 LFVASANDKQWAGVTESFE 279
LFV SA +KQW ++ E
Sbjct: 236 LFVVSATEKQWQSSQKTLE 254
>TAIR|locus:2025292 [details] [associations]
symbol:AT1G77090 species:3702 "Arabidopsis thaliana"
[GO:0005509 "calcium ion binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009523 "photosystem II"
evidence=IEA] [GO:0009654 "oxygen evolving complex" evidence=IEA]
[GO:0015979 "photosynthesis" evidence=IEA] [GO:0019898 "extrinsic
to membrane" evidence=IEA] [GO:0009543 "chloroplast thylakoid
lumen" evidence=IDA] [GO:0031977 "thylakoid lumen" evidence=IDA]
[GO:0009579 "thylakoid" evidence=IDA] [GO:0009570 "chloroplast
stroma" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0019252
"starch biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0019760
"glucosinolate metabolic process" evidence=RCA] [GO:0043085
"positive regulation of catalytic activity" evidence=RCA]
InterPro:IPR002683 Pfam:PF01789 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0019898 GO:GO:0005509
EMBL:AC002291 GO:GO:0009534 GO:GO:0031977 GO:GO:0015979
GO:GO:0009543 Gene3D:3.40.1000.10 InterPro:IPR016123
SUPFAM:SSF55724 GO:GO:0009654 EMBL:AK228434 EMBL:AF370571
IPI:IPI00546677 PIR:G96799 RefSeq:NP_565149.2 UniGene:At.43604
ProteinModelPortal:O49292 STRING:O49292 PaxDb:O49292 PRIDE:O49292
EnsemblPlants:AT1G77090.1 GeneID:844043 KEGG:ath:AT1G77090
TAIR:At1g77090 eggNOG:NOG322720 HOGENOM:HOG000244007
InParanoid:O49292 OMA:PEVIGEN PhylomeDB:O49292 ProtClustDB:PLN00066
BioCyc:MetaCyc:AT1G77090-MONOMER Genevestigator:O49292
GermOnline:AT1G77090 Uniprot:O49292
Length = 260
Score = 172 (65.6 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 43/144 (29%), Positives = 75/144 (52%)
Query: 130 PYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNK-- 187
PY F +P W ++ V+ G E ++++F K+G++ V+ +P++R +
Sbjct: 115 PYAFSVPQDWNEVPVSIADLGG------TE--IDLRFASPKEGRLSVIVAPVLRFADNLG 166
Query: 188 PNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTH 247
+ IE IG P KVI + GP V G + + +++ ++V + ++YY + LE P H
Sbjct: 167 DDVKIENIGQPAKVINAFGPEVIGENVE-GKVLSSNVAEHDGRLYYQFELEPP------H 219
Query: 248 NLAKATAKGSTVVLFVASANDKQW 271
L ATA G+ + LF + N QW
Sbjct: 220 VLITATAAGNRLYLFSVTGNGLQW 243
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 282 282 0.00083 115 3 11 23 0.42 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 596 (63 KB)
Total size of DFA: 202 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.16u 0.09s 25.25t Elapsed: 00:00:01
Total cpu time: 25.16u 0.09s 25.25t Elapsed: 00:00:01
Start: Mon May 20 22:35:30 2013 End: Mon May 20 22:35:31 2013