BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023424
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp
Length = 165
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 67/164 (40%), Gaps = 40/164 (24%)
Query: 131 YQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRLTNKP 188
Y+F+ P W Q++V E V+V F D E V VV + T
Sbjct: 18 YEFLYPRGWVQVQV--------------EDPVDVVFHDIIETTENVSVVVN-----TVAS 58
Query: 189 NASIEEIGSPEKVIASLGPFVTGNSYDPDE------LIETSVEKVGDQMYYNYLLETPFA 242
S+EE+GSPE+V G + N P E LI + +K D+ Y Y+LE
Sbjct: 59 TKSLEELGSPEEV----GDRLLRNIIAPSESGRSSALIAATSQKADDKTY--YILEYAVT 112
Query: 243 LTGT-------HNLAKATAKGSTVVLFVASANDKQWAGVTESFE 279
L G HNL+ V SA +++W V + F+
Sbjct: 113 LPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFK 156
>pdb|1V2B|A Chain A, Crystal Structure Of Psbp Protein In The Oxygen-Evolving
Complex Of Photosystem Ii From Higher Plants
pdb|1V2B|B Chain B, Crystal Structure Of Psbp Protein In The Oxygen-Evolving
Complex Of Photosystem Ii From Higher Plants
Length = 177
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 23/138 (16%)
Query: 164 VKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPEKVIASLGPFVTGNSYDPD------ 217
++FED ++ ++ +T SI + GSPE+ ++ + + +Y
Sbjct: 38 LRFEDN----FDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGG 93
Query: 218 ---------ELIETSVEKVGDQMYYNYLLETPFALT---GTHNLAKATAKGSTVVLFVAS 265
++ETS +VG + YY + T A G H L AT + + A
Sbjct: 94 FESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQ 153
Query: 266 ANDKQW-AGVTESFENHA 282
A DK+W G + EN A
Sbjct: 154 AGDKRWFKGAKKFVENTA 171
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 7 KSREVLEVSRFCSPEMAASLTTPLSPKFSASNGRKPS 43
K E+LE +R + E +L TPL+ AS+GRK +
Sbjct: 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKST 60
>pdb|2VU4|A Chain A, Structure Of Psbp Protein From Spinacia Oleracea At 1.98 A
Resolution
Length = 190
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 179 SPLIRLTNKPNASIEEIGSPEKVIASLGPFVTGNSY----DPD-----------ELIETS 223
S L++ T+K SI + GSPE ++ + + +Y D + ++E+S
Sbjct: 64 SVLVQPTDKK--SITDFGSPEDFLSQVDYLLGKQAYFGKTDSEGGFDSGVVASANVLESS 121
Query: 224 VEKVGDQMYYNYLLETPFA---LTGTHNLAKATAKGSTVVLFVASANDKQW 271
V + YY+ + T A G H + AT K + + A A DK+W
Sbjct: 122 TPVVDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLYICKAQAGDKRW 172
>pdb|1XX4|A Chain A, Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Coa
Length = 261
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 34 FSASNGRKPSNKIQRALTAFHQKGNECTRTPILRREILKGLAVIPVTL---IINKEPPYS 90
SA NG P+ ALT ++ + ++ I E L G+ V P L +N +
Sbjct: 102 ISAINGASPAGGCLMALTCDYRIMADNSKYTIGLNESLLGI-VAPFWLKDNYVNTIGHRA 160
Query: 91 EAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQM 142
R +++G+ PP+ + + P+D +A +V F +P +Q+
Sbjct: 161 AERALQLGTLFPPAEALKVGLVDEVVPEDQVHSKARSVMAKWFTIPDHSRQL 212
>pdb|2LNJ|A Chain A, Solution Structure Of Cyanobacterial Psbp (Cyanop) From
Synechocystis Sp. Pcc 6803
Length = 170
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 60/160 (37%), Gaps = 27/160 (16%)
Query: 131 YQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRLTNKP 188
Y+F+ P W + V K A P V+V F D E+ + V+ S +
Sbjct: 24 YEFLYPNGWIGVDV-----------KGASPGVDVVFRDLIERDENLSVIISEI-----PS 67
Query: 189 NASIEEIGSPEKVIASLGPFVTGNSYDPD--ELIETSVEKVGDQMYYNYLLETPFALTGT 246
+ ++ ++G+ V V S ELI Q+YY LE L G
Sbjct: 68 DKTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYT--LEYR-VLVGD 124
Query: 247 ----HNLAKATAKGSTVVLFVASANDKQWAGVTESFENHA 282
H+LA T ++ F S + +W V F+ A
Sbjct: 125 NVERHDLASVTTNRGKLITFDLSTAEDRWDTVKSLFDTVA 164
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 156 KCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPEK----VIASLGPFVTG 211
K +EP++E+ +DE ++V SP+ K N EIG K +I L F
Sbjct: 214 KLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNL---EIGQYSKIYDFIIDMLLVFQNA 270
Query: 212 NSY-DPDELIETSVEKVGDQMYYNYLLETPF 241
+ + DP LI + + Y+NYL++ F
Sbjct: 271 HIFNDPSALIYKDATTLTN--YFNYLIQKEF 299
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 156 KCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPEK----VIASLGPFVTG 211
K +EP++E+ +DE ++V SP+ K N EIG K +I L F
Sbjct: 229 KLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNL---EIGQYSKIYDFIIDMLLVFQNA 285
Query: 212 NSY-DPDELIETSVEKVGDQMYYNYLLETPF 241
+ + DP LI + + Y+NYL++ F
Sbjct: 286 HIFNDPSALIYKDATTLTN--YFNYLIQKEF 314
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 21 EMAASLTTPLSP--KFSASN----GRKPSNKIQRALTAFHQK 56
+++A P P KFS N KP N +Q+AL FH+K
Sbjct: 160 QVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEK 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,516,485
Number of Sequences: 62578
Number of extensions: 346816
Number of successful extensions: 655
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 12
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)