Query 023424
Match_columns 282
No_of_seqs 178 out of 274
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 06:33:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2b_A 23-kDa polypeptide of p 100.0 1.4E-38 4.7E-43 277.4 13.1 148 104-282 3-171 (177)
2 2xb3_A PSBP protein; photosynt 100.0 7.4E-35 2.5E-39 248.7 14.8 146 107-282 5-159 (165)
3 2lnj_A SLL1418 protein, putati 100.0 7.1E-36 2.4E-40 257.3 0.0 148 108-282 12-164 (170)
4 1tu1_A Hypothetical protein PA 97.4 0.0016 5.4E-08 54.0 11.1 124 128-281 8-135 (148)
5 3lyd_A Uncharacterized protein 92.1 2.6 8.9E-05 35.7 12.4 123 129-279 18-149 (161)
6 2pq4_B Periplasmic nitrate red 68.3 3.7 0.00013 26.3 2.6 15 65-79 3-17 (35)
7 4exr_A Putative lipoprotein; Y 58.3 30 0.001 29.1 7.3 62 196-266 32-93 (174)
8 4exr_A Putative lipoprotein; Y 46.7 58 0.002 27.3 7.2 41 193-239 111-151 (174)
9 4aay_B AROB; oxidoreductase, r 46.1 4.3 0.00015 34.5 0.0 21 64-84 9-29 (175)
10 2ysi_A Transcription elongatio 35.4 12 0.0004 24.3 0.9 22 254-275 17-38 (40)
11 1ywi_A Formin-binding protein 35.1 14 0.00049 23.9 1.2 21 254-274 19-39 (41)
12 3ld7_A LIN0431 protein; DUF131 33.7 79 0.0027 24.4 5.6 44 225-270 12-63 (101)
13 1e0l_A Formin binding protein; 31.7 13 0.00045 23.5 0.6 22 254-275 13-34 (37)
14 1e0n_A Hypothetical protein; Y 28.2 14 0.00048 22.0 0.3 20 254-273 7-26 (27)
15 2kpp_A LIN0431 protein; soluti 27.4 69 0.0024 25.3 4.3 46 225-270 12-63 (114)
16 4esn_A Hypothetical protein; p 22.3 1.5E+02 0.005 23.1 5.2 43 226-270 23-66 (104)
No 1
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=100.00 E-value=1.4e-38 Score=277.43 Aligned_cols=148 Identities=28% Similarity=0.439 Sum_probs=123.1
Q ss_pred CCCCCCceEEecCCCCCccccCCCCCCeEEEcCCCCccceeccccCCCcCCCCCCCCcceEEEee--CCCceEEEEEecC
Q 023424 104 SPTDPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPL 181 (282)
Q Consensus 104 ~~~~~gf~~y~~~~~~tp~~~~~~~dgY~F~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d--~~~enVsVvVsP~ 181 (282)
+..+.||.+|.+ +||+|+||++|+++++.+ .||+|++|+| +.++||+|+|+|+
T Consensus 3 ~~~~~g~~~y~~-------------~gysf~yP~~W~~~~~~~------------~~G~~~~f~d~~~~~~nvsV~v~p~ 57 (177)
T 1v2b_A 3 PKTDTDFQTYNG-------------DGFKLQIPSKWNPNKEVE------------YPGQVLRFEDNFDATSNVIVAITPT 57 (177)
T ss_dssp ----CCEEEEEC-------------SSEEEEEETTCEECCCCC------------STTEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCCCCCceEEec-------------CCEEEEcCCCCccccccc------------CCCceEEEeCCcCCCccEEEEEeCC
Confidence 345679999984 899999999999988765 3579999999 6789999999999
Q ss_pred cccCCCCCCCccccCCHHHH----HHhhcccccCC-----------CCCCCceEEeeEEEeCCeEEEEEEEEeccCC---
Q 023424 182 IRLTNKPNASIEEIGSPEKV----IASLGPFVTGN-----------SYDPDELIETSVEKVGDQMYYNYLLETPFAL--- 243 (282)
Q Consensus 182 ~~L~~~~~~sI~dlGspeev----~~~l~~~~~~~-----------~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~--- 243 (282)
. +++|+|||+|++| +++|+++++.+ ++++++||++++++.||++||+|||.+++++
T Consensus 58 ~------~~si~dlGspe~~~~~v~~~l~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e 131 (177)
T 1v2b_A 58 D------KKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNE 131 (177)
T ss_dssp S------CSSGGGGCSHHHHHHHTGGGC------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----
T ss_pred C------CCChhHCCCHHHHHHHHHHHHHHHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCc
Confidence 8 6999999999995 66677765542 3477999999999999999999999999998
Q ss_pred CCceEEEEEEEeCCeEEEEEeeeCcccccch-hhhccccC
Q 023424 244 TGTHNLAKATAKGSTVVLFVASANDKQWAGV-TESFENHA 282 (282)
Q Consensus 244 ~~rH~LasatV~~GkLYtl~a~a~ekrW~k~-~~~lr~~a 282 (282)
++||+|+++||++||||+|++|++|+||+++ ++.|++|+
T Consensus 132 ~~rH~l~~~tv~~gkLY~l~~~a~e~~W~k~~~~~l~~v~ 171 (177)
T 1v2b_A 132 GGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTA 171 (177)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEGGGCSTTTTHHHHHHH
T ss_pred cccEEEEEEEEECCEEEEEEEecCHHHhhhhHHHHHHHHH
Confidence 7999999999999999999999999999996 99998763
No 2
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=100.00 E-value=7.4e-35 Score=248.66 Aligned_cols=146 Identities=27% Similarity=0.442 Sum_probs=131.9
Q ss_pred CCCceEEecCCCCCccccCCCCCCeEEEcCCCCccceeccccCCCcCCCCCCCCcceEEEee--CCCceEEEEEecCccc
Q 023424 107 DPSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRL 184 (282)
Q Consensus 107 ~~gf~~y~~~~~~tp~~~~~~~dgY~F~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d--~~~enVsVvVsP~~~L 184 (282)
..||.+|.++ .+||+|.||++|+++.+.+ ++|++|+| +..+||+|+|+|+.
T Consensus 5 ~~g~~~~~D~-----------~~gysf~~P~~W~~~~~~~--------------g~~v~f~d~~~~~~~v~V~v~p~~-- 57 (165)
T 2xb3_A 5 TSGLQAYVDS-----------YDGYEFLYPRGWVQVQVED--------------PVDVVFHDIIETTENVSVVVNTVA-- 57 (165)
T ss_dssp -CCEEEEEET-----------TTTEEEEEETTEEEECCCT--------------TEEEEEEESSCTTSEEEEEEEECS--
T ss_pred CCCceEEEcC-----------CCCEEEEcCCCCeEecCCC--------------CceEEEECcccCCceEEEEEecCC--
Confidence 4699999964 4899999999999987653 59999999 66899999999998
Q ss_pred CCCCCCCccccCCHHHHHHhhcccccCC--CCCCCceEEeeEEEeCCeEEEEEEEEeccCC-----CCceEEEEEEEeCC
Q 023424 185 TNKPNASIEEIGSPEKVIASLGPFVTGN--SYDPDELIETSVEKVGDQMYYNYLLETPFAL-----TGTHNLAKATAKGS 257 (282)
Q Consensus 185 ~~~~~~sI~dlGspeev~~~l~~~~~~~--~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~-----~~rH~LasatV~~G 257 (282)
+.++|+|||+|++|+++|+++.++. +++.++|+++.+++.+|++||+|||.++.++ +.||+|++++|.+|
T Consensus 58 ---~~~~l~~~G~~e~va~~l~~~~~~~~~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g 134 (165)
T 2xb3_A 58 ---STKSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRG 134 (165)
T ss_dssp ---SCCCSGGGCCHHHHHHHHHHHTTSCTTSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETT
T ss_pred ---CCCChHHcCCHHHHHHHHHHHhhcCCCCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECC
Confidence 3799999999999999999988764 4788999999999999999999999999888 78999999999999
Q ss_pred eEEEEEeeeCcccccchhhhccccC
Q 023424 258 TVVLFVASANDKQWAGVTESFENHA 282 (282)
Q Consensus 258 kLYtl~a~a~ekrW~k~~~~lr~~a 282 (282)
|||+|++++||++|.+++++|++|+
T Consensus 135 ~lY~l~~sape~~w~~~~~~l~~v~ 159 (165)
T 2xb3_A 135 KVYTLSVSAPEERWPKVEDQFKTIV 159 (165)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHH
T ss_pred EEEEEEEecCHHHhHHHHHHHHHHH
Confidence 9999999999999999999998863
No 3
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=100.00 E-value=7.1e-36 Score=257.33 Aligned_cols=148 Identities=22% Similarity=0.384 Sum_probs=134.3
Q ss_pred CCceEEecCCCCCccccCCCCCCeEEEcCCCCccceeccccCCCcCCCCCCCCcceEEEee--CCCceEEEEEecCcccC
Q 023424 108 PSFVFFKASPKDTPALRAGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRLT 185 (282)
Q Consensus 108 ~gf~~y~~~~~~tp~~~~~~~dgY~F~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d--~~~enVsVvVsP~~~L~ 185 (282)
.||.+|.++ .+||+|.||++|+++.+.+... ++|++|+| +.++||+|+|+|+.+
T Consensus 12 ~g~~~y~d~-----------~~gy~f~~P~gW~~~~~~~~~~-----------g~~v~f~d~~~~~~nvsV~v~p~~~-- 67 (170)
T 2lnj_A 12 ASLQRYSDT-----------KDGYEFLYPNGWIGVDVKGASP-----------GVDVVFRDLIERDENLSVIISEIPS-- 67 (170)
Confidence 589999953 4899999999999987765332 49999999 778999999999993
Q ss_pred CCCCCCccccCCHHHHHHhhcccccCC--CCCCCceEEeeEEEeCCeEEEEEEEEeccC-CCCceEEEEEEEeCCeEEEE
Q 023424 186 NKPNASIEEIGSPEKVIASLGPFVTGN--SYDPDELIETSVEKVGDQMYYNYLLETPFA-LTGTHNLAKATAKGSTVVLF 262 (282)
Q Consensus 186 ~~~~~sI~dlGspeev~~~l~~~~~~~--~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~-~~~rH~LasatV~~GkLYtl 262 (282)
.++|+|||+|++|+++|++++++. +++.++||++.+++.+|++||+|||.++.+ ++.||+|++++|.+||||+|
T Consensus 68 ---~~si~d~G~pe~va~~l~~~~~~~~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l 144 (170)
T 2lnj_A 68 ---DKTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITF 144 (170)
Confidence 699999999999999999998874 488999999999999999999999999998 68899999999999999999
Q ss_pred EeeeCcccccchhhhccccC
Q 023424 263 VASANDKQWAGVTESFENHA 282 (282)
Q Consensus 263 ~a~a~ekrW~k~~~~lr~~a 282 (282)
++++||++|.+++++|++|+
T Consensus 145 ~~~ape~~w~~~~~~l~~v~ 164 (170)
T 2lnj_A 145 DLSTAEDRWDTVKSLFDTVA 164 (170)
Confidence 99999999999999999874
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=97.39 E-value=0.0016 Score=54.05 Aligned_cols=124 Identities=4% Similarity=-0.013 Sum_probs=82.4
Q ss_pred CCCeEEEcCCCCccceeccccCCCcCCCCCCCCcceEEEee-CC-C--ceEEEEEecCcccCCCCCCCccccCCHHHHHH
Q 023424 128 VQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED-EK-Q--GKVQVVASPLIRLTNKPNASIEEIGSPEKVIA 203 (282)
Q Consensus 128 ~dgY~F~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d-~~-~--enVsVvVsP~~~L~~~~~~sI~dlGspeev~~ 203 (282)
+.+++|.+|.+|++.. .-+.+-. +. . -+|.|...++. +..+++++=.-+ .+
T Consensus 8 ~~Egsl~lP~gw~D~t------------------~nv~~~~~~~~~g~~~lvIsR~~~~-----~~~~l~~~~~~q--~~ 62 (148)
T 1tu1_A 8 LHEADLEIPDAWQDQS------------------INIFKLPASGPAREASFVISRDASQ-----GDAPFADYVARQ--LE 62 (148)
T ss_dssp CSSEEEEEETTSEECC------------------BEEEEECCBTTBCCEEEEEEEECCC-----TTSCHHHHHHHH--HH
T ss_pred ECCEEEeCCCCcEeee------------------EEEEEcCCCCCCCceEEEEEeccCC-----CCCCHHHHHHHH--HH
Confidence 5799999999999553 2233333 32 2 24444444555 345555543322 11
Q ss_pred hhcccccCCCCCCCceEEeeEEEeCCeEEEEEEEEeccCCCCceEEEEEEEeCCeEEEEEeeeCcccccchhhhcccc
Q 023424 204 SLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWAGVTESFENH 281 (282)
Q Consensus 204 ~l~~~~~~~~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~~~rH~LasatV~~GkLYtl~a~a~ekrW~k~~~~lr~~ 281 (282)
.|.++ ...-+++.......+|..-..+||.-.......|+.-.+.+..+++|+|+.+++..-|...+..+..+
T Consensus 63 ~l~~~-----l~~y~~~~~~~~~l~g~~a~~~e~~~~~~g~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~~~~~~~i 135 (148)
T 1tu1_A 63 NAEKQ-----LPGFKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQA 135 (148)
T ss_dssp HHHHH-----STTCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHHH
T ss_pred HHHhh-----CcCcEEeeeEeEEEcCCcEEEEEEEEccCCEEEEEEEEEEEECCeEEEEEEEcCCCCCHHHHHHHHHH
Confidence 12111 12246666666667899888888888766677999999988877999999999999999988877653
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=92.14 E-value=2.6 Score=35.74 Aligned_cols=123 Identities=10% Similarity=-0.011 Sum_probs=74.5
Q ss_pred CCeEEEcCCCCccceeccccCCCcCCCCCCCCcceEEEee----CCCceEEEEEecCcccCCCCCCCccccCCHHHHHHh
Q 023424 129 QPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFED----EKQGKVQVVASPLIRLTNKPNASIEEIGSPEKVIAS 204 (282)
Q Consensus 129 dgY~F~yP~gW~~~~v~~~~sG~~~~p~~~~~~~dv~F~d----~~~enVsVvVsP~~~L~~~~~~sI~dlGspeev~~~ 204 (282)
.++++-.|.||+.....+. +-+.=.+ .=.-|+-|.+.-.. .++ .|+.-..
T Consensus 18 p~~~v~~P~gWe~~~~~~~--------------~~~~~~~~~~~~F~pN~vVtv~r~~-------~~~-----~e~~r~e 71 (161)
T 3lyd_A 18 TGFTVPIPETWQPDPTMGT--------------QFAARPHTPPQGFTPNIIGTVRRAA-------TGA-----LHNQRTE 71 (161)
T ss_dssp CEEEEECCTTEEECTTSSS--------------SEEEEESSCCSSSCCEEEEEEEEEC-------TTH-----HHHHHHH
T ss_pred ceeeccCCCCceEcCCCCc--------------eEEeccCCCCCCccccEEEEEEecC-------cHH-----HHHHHHH
Confidence 5899999999999854431 1111122 12358888877655 112 2433333
Q ss_pred hcccccCCCCCCCceEEeeEEEeCCeEEEEEEEEeccCCCCce---EEEEEEEeCCeEEEE--EeeeCcccccchhhhcc
Q 023424 205 LGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTH---NLAKATAKGSTVVLF--VASANDKQWAGVTESFE 279 (282)
Q Consensus 205 l~~~~~~~~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~~~rH---~LasatV~~GkLYtl--~a~a~ekrW~k~~~~lr 279 (282)
|.+.+ .....-++++-...+.+|..-|..||....+..+.| ...++.-.++..|++ ++++.+.+-....+.++
T Consensus 72 l~~~~--~~lp~~~~~~r~~~~~~G~pa~~iey~y~~~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~~~~~d~q 149 (161)
T 3lyd_A 72 LDQRA--TQLPDYAERGRTETTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADYWDTFR 149 (161)
T ss_dssp HHHHH--TTSTTCEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHH--hhCCCcEeecccccccCCcccEEEEEEEecCCCceEeeEEEEEEEecCCEEEEEEEEEEeccccchHHHHHHH
Confidence 32211 112234666667778899999999999766666666 344455577788887 77887766555444444
No 6
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=68.25 E-value=3.7 Score=26.27 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=11.4
Q ss_pred chhHHHHHHhhhhhH
Q 023424 65 ILRREILKGLAVIPV 79 (282)
Q Consensus 65 ~sRR~~L~~~a~~aa 79 (282)
.+||++|.+.++++|
T Consensus 3 lsRR~FLK~~aaa~A 17 (35)
T 2pq4_B 3 LSRRSFMKANAVAAA 17 (35)
T ss_dssp CCSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 689999987765543
No 7
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=58.29 E-value=30 Score=29.12 Aligned_cols=62 Identities=11% Similarity=0.029 Sum_probs=41.0
Q ss_pred CCHHHHHHhhcccccCCCCCCCceEEeeEEEeCCeEEEEEEEEeccCCCCceEEEEEEEeCCeEEEEEeee
Q 023424 196 GSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLETPFALTGTHNLAKATAKGSTVVLFVASA 266 (282)
Q Consensus 196 Gspeev~~~l~~~~~~~~~~~a~Ll~a~~r~~dG~tYY~yE~~~~~~~~~rH~LasatV~~GkLYtl~a~a 266 (282)
=+++++...+.+++-| +.|++..-...+|+.+|.+|+... ++..=+-+-...|++.-.....
T Consensus 32 is~e~A~~~a~~~~pg-----a~I~~iele~~~G~~vYEVe~~~~----g~e~ev~IDA~tG~Vl~~~~e~ 93 (174)
T 4exr_A 32 VPYTDAINIFKDKYKD-----ADIVDLSLERDLNKFVYTVEGVDD----NNEYKMKIDANTKDVLEDKTEK 93 (174)
T ss_dssp SCHHHHHHHHHHHSTT-----CEEEEEEEEEETTEEEEEEEEECS----SEEEEEEEETTTCCEEEEEEEE
T ss_pred CCHHHHHHHHHHHCCC-----CEEEEEEEEEeCCEEEEEEEEEEC----CEEEEEEEECCCCcEecccccc
Confidence 3677788777665422 477777777789999999988732 3334444555667777666544
No 8
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=46.72 E-value=58 Score=27.32 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=29.6
Q ss_pred cccCCHHHHHHhhcccccCCCCCCCceEEeeEEEeCCeEEEEEEEEe
Q 023424 193 EEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLLET 239 (282)
Q Consensus 193 ~dlGspeev~~~l~~~~~~~~~~~a~Ll~a~~r~~dG~tYY~yE~~~ 239 (282)
...-+++++...-++.. + ..+++..-...+|+.||.+|+..
T Consensus 111 ~~~is~~~A~~~Al~~~-~-----G~v~e~eLd~d~G~~vYevei~~ 151 (174)
T 4exr_A 111 NDIMTPQQAMEIALKEQ-N-----GIVKEWSLDKDLDVTFYKIRIDK 151 (174)
T ss_dssp TTCCCHHHHHHHHHHHS-C-----SEEEEEEEEEETTEEEEEEEEEE
T ss_pred cCCcCHHHHHHHHHHhC-C-----CeEEEEEEEEeCCEEEEEEEEEE
Confidence 44567888777665554 2 36777776677999999999884
No 9
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=46.06 E-value=4.3 Score=34.51 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=0.0
Q ss_pred cchhHHHHHHhhhhhHhhhhc
Q 023424 64 PILRREILKGLAVIPVTLIIN 84 (282)
Q Consensus 64 ~~sRR~~L~~~a~~aa~~~~~ 84 (282)
..+||++|.+++++++++.++
T Consensus 9 ~~~rr~fl~~~~~a~~~~~~~ 29 (175)
T 4aay_B 9 DIGRRQFLRGGALAAAGATAA 29 (175)
T ss_dssp ---------------------
T ss_pred cccHHHHhhhhHHhhhheeEe
Confidence 588999999776665544333
No 10
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=35.42 E-value=12 Score=24.27 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=18.1
Q ss_pred EeCCeEEEEEeeeCcccccchh
Q 023424 254 AKGSTVVLFVASANDKQWAGVT 275 (282)
Q Consensus 254 V~~GkLYtl~a~a~ekrW~k~~ 275 (282)
..+|+.|-++..+.+.+|.+-.
T Consensus 17 ~~~G~~YYyN~~T~eS~We~P~ 38 (40)
T 2ysi_A 17 TPDGKVYYYNARTRESAWTKPD 38 (40)
T ss_dssp CTTSCEEEEETTTCCEESSCCS
T ss_pred CCCCCEEEEECCCCCEEeCCCC
Confidence 5678888889999999998754
No 11
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=35.12 E-value=14 Score=23.94 Aligned_cols=21 Identities=5% Similarity=0.273 Sum_probs=17.1
Q ss_pred EeCCeEEEEEeeeCcccccch
Q 023424 254 AKGSTVVLFVASANDKQWAGV 274 (282)
Q Consensus 254 V~~GkLYtl~a~a~ekrW~k~ 274 (282)
..+|+.|-+++.+.+++|.+-
T Consensus 19 ~~~G~~YYyN~~T~eS~We~P 39 (41)
T 1ywi_A 19 SPDGRTYYYNTETKQSTWEKP 39 (41)
T ss_dssp ETTTEEEEEETTTTEEEESCC
T ss_pred CCCCCEEEEECCCCCEEeCCC
Confidence 457888888899999999864
No 12
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=33.74 E-value=79 Score=24.39 Aligned_cols=44 Identities=7% Similarity=-0.019 Sum_probs=31.0
Q ss_pred EEeCCeEEEEEEEEecc--------CCCCceEEEEEEEeCCeEEEEEeeeCccc
Q 023424 225 EKVGDQMYYNYLLETPF--------ALTGTHNLAKATAKGSTVVLFVASANDKQ 270 (282)
Q Consensus 225 r~~dG~tYY~yE~~~~~--------~~~~rH~LasatV~~GkLYtl~a~a~ekr 270 (282)
-..||+.|+.|.+.... ...+.+ ..+-|.+|++....+.+|++-
T Consensus 12 I~vdGk~~~~i~L~~~~~~~~~~i~~~~G~~--n~ieI~dg~vrv~es~CPdki 63 (101)
T 3ld7_A 12 ISQNGKVIREIPLTGHKGNEQFTIKGKGAQY--NLMEVDGERIRIKEDNSPDQV 63 (101)
T ss_dssp EEETTEEEEEEECTTCBSEEEEEEECSTTCE--EEEEEETTEEEEEEECCSSCH
T ss_pred EEECCEEEEEEECCCCCCCEEEEEEcCCCCE--EEEEEECCEEEEEECCCCCcc
Confidence 34589999988875211 112223 467899999999999999873
No 13
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=31.72 E-value=13 Score=23.47 Aligned_cols=22 Identities=5% Similarity=0.211 Sum_probs=17.9
Q ss_pred EeCCeEEEEEeeeCcccccchh
Q 023424 254 AKGSTVVLFVASANDKQWAGVT 275 (282)
Q Consensus 254 V~~GkLYtl~a~a~ekrW~k~~ 275 (282)
..+|+.|-++..+.+++|.+-.
T Consensus 13 ~~~G~~YYyN~~T~es~We~P~ 34 (37)
T 1e0l_A 13 TADGKTYYYNNRTLESTWEKPQ 34 (37)
T ss_dssp CTTSCEEEEETTTTEEESSCCS
T ss_pred CCCCCEEEEECCCCCEEecCCC
Confidence 4568888889999999998754
No 14
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=28.23 E-value=14 Score=22.03 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=16.1
Q ss_pred EeCCeEEEEEeeeCcccccc
Q 023424 254 AKGSTVVLFVASANDKQWAG 273 (282)
Q Consensus 254 V~~GkLYtl~a~a~ekrW~k 273 (282)
-..|+.|=+++.+.+++|.+
T Consensus 7 ~~~g~~YYyN~~T~~s~We~ 26 (27)
T 1e0n_A 7 HENGRPLYYNAEQKTKLHYP 26 (27)
T ss_dssp ESSSSEEEEETTTTEEESSC
T ss_pred CCCCCeEEEECCCCCEeccC
Confidence 35788888899999999964
No 15
>2kpp_A LIN0431 protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG, function; NMR {Listeria innocua}
Probab=27.43 E-value=69 Score=25.32 Aligned_cols=46 Identities=7% Similarity=-0.029 Sum_probs=31.4
Q ss_pred EEeCCeEEEEEEEEeccCC------CCceEEEEEEEeCCeEEEEEeeeCccc
Q 023424 225 EKVGDQMYYNYLLETPFAL------TGTHNLAKATAKGSTVVLFVASANDKQ 270 (282)
Q Consensus 225 r~~dG~tYY~yE~~~~~~~------~~rH~LasatV~~GkLYtl~a~a~ekr 270 (282)
-..||+.|+.|.+...... +.......+-|.+|++...-+.||++-
T Consensus 12 I~vdGk~~~~i~L~~~~~~~~i~i~~~~G~~n~IeIkdg~vrv~es~CPdki 63 (114)
T 2kpp_A 12 ISQNGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKEDNSPDQV 63 (114)
T ss_dssp EEETTEEEEEEECTTCCSEEEEEEEEETTEEEEEEEESSCEEEEEECCSSCH
T ss_pred EEECCEEEEEEECCCCCcceEEEEecCCCCEEEEEEECCEEEEEECCCCCee
Confidence 4569999988887433210 011123568899999999999999873
No 16
>4esn_A Hypothetical protein; protein of PF07009 family, DUF1312, structural genomics, JOI for structural genomics, JCSG; HET: PE4; 2.20A {Ruminococcus gnavus}
Probab=22.31 E-value=1.5e+02 Score=23.10 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=29.7
Q ss_pred EeCCeEEEEEEEEeccCCC-CceEEEEEEEeCCeEEEEEeeeCccc
Q 023424 226 KVGDQMYYNYLLETPFALT-GTHNLAKATAKGSTVVLFVASANDKQ 270 (282)
Q Consensus 226 ~~dG~tYY~yE~~~~~~~~-~rH~LasatV~~GkLYtl~a~a~ekr 270 (282)
..||+.|+.|.+... ..+ -.. ...+-|.+|++....+.+|++-
T Consensus 23 ~vdGk~~~~i~L~~~-~~i~i~g-~n~IeI~dg~vrv~es~CPdki 66 (104)
T 4esn_A 23 TVDGEVYGTYSLAKD-QTIEIQD-GNRLRIQNGQAKMEWADCPDQL 66 (104)
T ss_dssp EETTEEEEEEETTSC-EEEEETT-TEEEEEETTEEEEEEECCSSCH
T ss_pred EECCEEEEEEECCCC-cEEEECC-cEEEEEECCEEEEEECCCCCcc
Confidence 459999998876422 000 000 2467899999999999999873
Done!