BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023425
         (282 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus
           C5321 From Cft073 E.Coli Strain
          Length = 490

 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%)

Query: 113 LVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGD 172
           L   A  G+  AQ ELG R    N+  +   QA  +  +A +Q +  A Y+LG  Y+ G+
Sbjct: 30  LKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGE 89

Query: 173 CVKKDIASALWCFHRASEKG 192
            V +D A A+  + +A+ KG
Sbjct: 90  GVPQDYAQAVIWYKKAALKG 109



 Score = 35.8 bits (81), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 10/135 (7%)

Query: 81  ADNSNTHARYWLSKLHLKYHVPGACKAMGAAL--LVDAANMGDPDAQYELGC---RLRVE 135
           A+  N+  +Y+L+ L+ K    G  K    A+     +A  GD  AQ  LG    RL  E
Sbjct: 286 AEQGNSDGQYYLAHLYDK-GAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSE 344

Query: 136 NDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAG 195
            ++    ++A  +  KA  +    A + LG   L G  VKKD   A     +A+E+G + 
Sbjct: 345 EEH----KKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSA 400

Query: 196 AAIAYGSLLLRGVQV 210
           A +  G +   G+ V
Sbjct: 401 AQVQLGEIYYYGLGV 415



 Score = 34.7 bits (78), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 164 LGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPE 212
           LG  Y  G+   KD+  A+  F RA+E+G+  A    G   + G  VP+
Sbjct: 45  LGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQ 93



 Score = 33.5 bits (75), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 39/95 (41%)

Query: 116 AANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVK 175
           AA  G P AQ  LG      N       ++  +   A +Q        +G  Y  GD V 
Sbjct: 105 AALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVT 164

Query: 176 KDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQV 210
           +D   A   + +A+E+G+  +    G +  RG+ V
Sbjct: 165 RDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGV 199



 Score = 30.4 bits (67), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 30/65 (46%)

Query: 125 QYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWC 184
           Q+ LG  L       + +QQA  ++ KA +Q    A   LG +Y  G  V++D   A   
Sbjct: 366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAW 425

Query: 185 FHRAS 189
           F  AS
Sbjct: 426 FDTAS 430


>pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Protein B (Hcpb)
          Length = 138

 Score = 28.5 bits (62), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187
            GC   V N  + + Q+ F Y+ KA +         LG  Y  G  VKKD+  A   + +
Sbjct: 28  FGCLSLVSNSQI-NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSK 86

Query: 188 A 188
           A
Sbjct: 87  A 87


>pdb|3ZN3|A Chain A, N-terminal Domain Of S. Pombe Cdc23 Apc Subunit
          Length = 291

 Score = 28.5 bits (62), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 6/36 (16%)

Query: 139 VQSDQQAFYYIEKAVDQLH------PGALYLLGTVY 168
           + S  + FYYI + ++ LH      P  LYL G VY
Sbjct: 131 LSSTNREFYYISEVLESLHYQGNKDPYLLYLSGVVY 166


>pdb|1W17|A Chain A, Structure Of Bacillus Subtilis Pdaa, A Family 4
           Carbohydrate Esterase.
 pdb|1W17|B Chain B, Structure Of Bacillus Subtilis Pdaa, A Family 4
           Carbohydrate Esterase
          Length = 263

 Score = 27.3 bits (59), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 147 YYIEKAVDQLHPGALYLLGTV 167
           Y  +  + Q HPGA+YLL TV
Sbjct: 204 YAYDHMIKQAHPGAIYLLHTV 224


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,452,064
Number of Sequences: 62578
Number of extensions: 273613
Number of successful extensions: 590
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 13
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)