Query 023425
Match_columns 282
No_of_seqs 197 out of 2481
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:55:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0790 FOG: TPR repeat, SEL1 99.9 6.5E-25 1.4E-29 192.5 25.7 215 55-271 44-284 (292)
2 COG0790 FOG: TPR repeat, SEL1 99.9 8.8E-24 1.9E-28 185.4 24.9 201 27-229 51-268 (292)
3 KOG1550 Extracellular protein 99.9 3.5E-22 7.5E-27 188.9 25.4 245 24-271 219-521 (552)
4 KOG1550 Extracellular protein 99.9 4.5E-22 9.8E-27 188.1 21.7 198 68-269 228-442 (552)
5 KOG4626 O-linked N-acetylgluco 99.9 4.3E-22 9.3E-27 181.0 15.4 233 19-268 220-468 (966)
6 KOG4626 O-linked N-acetylgluco 99.9 9.4E-21 2E-25 172.4 15.7 251 4-271 165-437 (966)
7 KOG4014 Uncharacterized conser 99.8 1.1E-18 2.4E-23 137.3 16.0 163 63-226 46-232 (248)
8 TIGR00990 3a0801s09 mitochondr 99.7 7.5E-15 1.6E-19 141.5 25.4 222 31-268 308-554 (615)
9 KOG4014 Uncharacterized conser 99.7 1.8E-15 3.9E-20 119.3 15.4 123 82-207 30-157 (248)
10 TIGR00990 3a0801s09 mitochondr 99.7 2E-14 4.3E-19 138.6 22.6 211 29-255 343-573 (615)
11 KOG1155 Anaphase-promoting com 99.7 2.2E-14 4.8E-19 127.4 20.2 193 59-267 337-552 (559)
12 PRK11189 lipoprotein NlpI; Pro 99.6 4.1E-13 8.9E-18 118.1 21.0 223 31-268 40-281 (296)
13 KOG1155 Anaphase-promoting com 99.6 1.5E-13 3.3E-18 122.2 16.4 197 30-252 343-552 (559)
14 PRK12370 invasion protein regu 99.5 2E-12 4.3E-17 123.2 22.4 178 64-253 273-470 (553)
15 PRK12370 invasion protein regu 99.5 2.9E-12 6.3E-17 122.0 23.3 181 30-226 274-469 (553)
16 PRK11447 cellulose synthase su 99.5 4.2E-12 9.1E-17 130.4 25.8 227 30-268 316-649 (1157)
17 PRK15174 Vi polysaccharide exp 99.5 1.2E-11 2.5E-16 120.0 27.2 157 105-269 227-404 (656)
18 PRK15174 Vi polysaccharide exp 99.5 1E-11 2.2E-16 120.5 26.4 211 30-254 89-348 (656)
19 TIGR02917 PEP_TPR_lipo putativ 99.5 9.6E-12 2.1E-16 123.2 25.0 194 57-266 470-679 (899)
20 TIGR02917 PEP_TPR_lipo putativ 99.5 2E-11 4.3E-16 121.0 26.7 173 66-254 615-800 (899)
21 PRK11447 cellulose synthase su 99.5 8.7E-12 1.9E-16 128.1 24.9 148 29-185 363-552 (1157)
22 KOG1126 DNA-binding cell divis 99.5 1.3E-12 2.9E-17 120.6 16.6 220 33-269 335-604 (638)
23 PRK11788 tetratricopeptide rep 99.5 2.1E-11 4.6E-16 110.8 24.0 210 30-255 82-313 (389)
24 TIGR02521 type_IV_pilW type IV 99.5 1.6E-11 3.5E-16 102.2 21.3 146 66-227 45-198 (234)
25 TIGR02521 type_IV_pilW type IV 99.5 2.1E-11 4.6E-16 101.4 20.8 177 30-223 44-228 (234)
26 PRK11788 tetratricopeptide rep 99.4 2.4E-11 5.1E-16 110.5 21.6 222 29-267 47-293 (389)
27 PRK09782 bacteriophage N4 rece 99.4 3.2E-11 7E-16 120.6 24.0 209 30-257 489-710 (987)
28 KOG1126 DNA-binding cell divis 99.4 7.8E-12 1.7E-16 115.6 15.2 185 59-259 428-626 (638)
29 PRK09782 bacteriophage N4 rece 99.4 5.3E-11 1.2E-15 119.0 21.7 207 30-254 522-741 (987)
30 KOG1125 TPR repeat-containing 99.4 3.1E-11 6.8E-16 110.1 16.4 178 65-254 298-528 (579)
31 COG3063 PilF Tfp pilus assembl 99.4 1.2E-10 2.6E-15 95.6 17.8 145 66-226 49-201 (250)
32 KOG1173 Anaphase-promoting com 99.3 1.2E-10 2.7E-15 106.0 18.8 187 66-268 326-535 (611)
33 KOG0547 Translocase of outer m 99.3 3.3E-11 7.2E-16 108.1 14.9 216 23-254 332-567 (606)
34 PF13429 TPR_15: Tetratricopep 99.3 2.7E-11 5.9E-16 105.6 13.7 230 28-274 19-266 (280)
35 PRK11189 lipoprotein NlpI; Pro 99.3 7.3E-11 1.6E-15 103.8 16.2 180 30-226 77-264 (296)
36 KOG2002 TPR-containing nuclear 99.3 5.1E-10 1.1E-14 107.5 22.7 232 30-269 283-577 (1018)
37 KOG2002 TPR-containing nuclear 99.3 2.1E-10 4.7E-15 110.0 20.0 222 30-268 177-426 (1018)
38 KOG2003 TPR repeat-containing 99.2 3.6E-09 7.7E-14 94.6 21.3 150 60-225 498-653 (840)
39 PRK10370 formate-dependent nit 99.2 7E-10 1.5E-14 91.8 15.2 120 65-194 52-176 (198)
40 PRK10049 pgaA outer membrane p 99.2 6.9E-09 1.5E-13 102.6 24.1 249 5-268 65-405 (765)
41 KOG1129 TPR repeat-containing 99.2 1.5E-09 3.2E-14 93.4 16.3 186 67-269 238-442 (478)
42 KOG1129 TPR repeat-containing 99.2 3.8E-10 8.3E-15 97.0 12.6 221 16-254 221-459 (478)
43 KOG2003 TPR repeat-containing 99.2 1.7E-09 3.8E-14 96.5 17.1 221 24-260 426-662 (840)
44 PRK15359 type III secretion sy 99.2 2E-09 4.3E-14 84.5 15.0 119 72-205 13-137 (144)
45 TIGR03302 OM_YfiO outer membra 99.2 5.6E-09 1.2E-13 88.5 18.7 147 66-224 47-229 (235)
46 PRK10049 pgaA outer membrane p 99.1 1.9E-08 4.1E-13 99.6 22.2 131 30-170 28-162 (765)
47 PLN02789 farnesyltranstransfer 99.1 4.9E-08 1.1E-12 86.5 22.2 214 30-270 33-269 (320)
48 KOG0547 Translocase of outer m 99.1 6E-09 1.3E-13 93.8 16.0 182 32-229 375-568 (606)
49 KOG1840 Kinesin light chain [C 99.1 1.7E-08 3.8E-13 93.7 19.7 215 22-252 204-478 (508)
50 PRK15359 type III secretion sy 99.1 2.5E-09 5.5E-14 83.9 12.2 120 38-169 14-137 (144)
51 PF13429 TPR_15: Tetratricopep 99.1 1.7E-09 3.7E-14 94.2 12.3 204 30-252 57-276 (280)
52 COG3063 PilF Tfp pilus assembl 99.0 3.3E-08 7.1E-13 81.4 17.3 160 86-261 35-210 (250)
53 KOG1173 Anaphase-promoting com 99.0 1.7E-08 3.7E-13 92.3 15.8 205 7-228 293-519 (611)
54 KOG1125 TPR repeat-containing 99.0 3.1E-08 6.8E-13 90.8 17.1 151 65-227 332-527 (579)
55 TIGR02552 LcrH_SycD type III s 99.0 1.5E-08 3.3E-13 78.1 12.7 109 73-193 4-116 (135)
56 KOG1130 Predicted G-alpha GTPa 98.9 7.7E-09 1.7E-13 91.5 10.9 213 25-249 25-300 (639)
57 PRK10747 putative protoheme IX 98.9 3.7E-07 8.1E-12 83.6 22.2 223 30-271 97-376 (398)
58 KOG1130 Predicted G-alpha GTPa 98.9 1.5E-08 3.3E-13 89.7 12.1 220 22-253 60-344 (639)
59 TIGR03302 OM_YfiO outer membra 98.9 1.2E-07 2.6E-12 80.3 16.9 160 81-252 28-231 (235)
60 PRK15179 Vi polysaccharide bio 98.9 5.9E-07 1.3E-11 87.2 22.4 140 67-226 71-216 (694)
61 COG2956 Predicted N-acetylgluc 98.9 1.2E-06 2.5E-11 75.7 21.4 188 64-267 47-257 (389)
62 KOG1840 Kinesin light chain [C 98.8 1.9E-07 4.1E-12 86.9 17.1 159 54-228 201-397 (508)
63 PRK10747 putative protoheme IX 98.8 1.7E-06 3.8E-11 79.2 23.4 207 29-253 130-390 (398)
64 TIGR00540 hemY_coli hemY prote 98.8 9.4E-07 2E-11 81.3 21.3 86 30-119 131-216 (409)
65 PF14938 SNAP: Soluble NSF att 98.8 1.1E-07 2.5E-12 83.0 14.5 189 7-226 2-224 (282)
66 PLN02789 farnesyltranstransfer 98.8 8.6E-07 1.9E-11 78.6 19.6 190 30-226 50-249 (320)
67 PRK10370 formate-dependent nit 98.8 2E-07 4.4E-12 77.1 14.3 112 103-226 52-172 (198)
68 PRK15363 pathogenicity island 98.8 4.8E-08 1E-12 76.6 9.7 91 57-155 40-132 (157)
69 PRK15363 pathogenicity island 98.8 1.3E-07 2.9E-12 74.1 11.8 97 83-191 32-132 (157)
70 PRK14574 hmsH outer membrane p 98.7 2E-06 4.4E-11 85.0 21.3 146 66-226 48-197 (822)
71 TIGR02552 LcrH_SycD type III s 98.7 4.3E-07 9.2E-12 70.0 12.6 103 111-225 4-112 (135)
72 PRK15179 Vi polysaccharide bio 98.7 2.8E-07 6E-12 89.4 13.8 127 53-191 87-217 (694)
73 cd05804 StaR_like StaR_like; a 98.7 1.5E-06 3.3E-11 78.0 17.4 150 63-225 54-213 (355)
74 TIGR00540 hemY_coli hemY prote 98.7 1.2E-05 2.6E-10 74.0 22.8 225 30-271 97-385 (409)
75 COG2956 Predicted N-acetylgluc 98.6 1.4E-05 3E-10 69.2 20.7 204 32-253 50-278 (389)
76 PLN03088 SGT1, suppressor of 98.6 7.1E-07 1.5E-11 80.5 12.2 96 66-169 16-115 (356)
77 PF14938 SNAP: Soluble NSF att 98.6 3E-06 6.5E-11 74.1 15.6 185 35-254 2-226 (282)
78 KOG2076 RNA polymerase III tra 98.6 4.3E-06 9.3E-11 80.5 17.2 148 63-226 150-308 (895)
79 KOG1174 Anaphase-promoting com 98.5 3E-05 6.4E-10 69.2 20.3 193 65-272 313-521 (564)
80 KOG2076 RNA polymerase III tra 98.5 2.6E-05 5.6E-10 75.3 21.3 101 29-134 151-253 (895)
81 PLN03218 maturation of RBCL 1; 98.5 4.9E-05 1.1E-09 77.4 23.9 144 65-224 555-710 (1060)
82 PLN03218 maturation of RBCL 1; 98.5 5.2E-05 1.1E-09 77.2 24.0 210 30-255 555-785 (1060)
83 PRK11906 transcriptional regul 98.5 1.1E-05 2.5E-10 73.3 16.8 135 63-205 269-419 (458)
84 CHL00033 ycf3 photosystem I as 98.5 1.3E-05 2.8E-10 64.4 15.4 116 122-264 35-163 (168)
85 PRK14574 hmsH outer membrane p 98.5 1.4E-05 2.9E-10 79.2 18.2 167 28-206 45-215 (822)
86 PRK10153 DNA-binding transcrip 98.4 8.6E-06 1.9E-10 76.8 16.1 140 33-193 336-484 (517)
87 PRK02603 photosystem I assembl 98.4 1.1E-05 2.4E-10 65.1 14.5 79 120-206 33-118 (172)
88 PF09976 TPR_21: Tetratricopep 98.4 9.9E-06 2.2E-10 63.5 13.6 111 67-189 26-145 (145)
89 COG5010 TadD Flp pilus assembl 98.4 3.8E-05 8.3E-10 64.6 16.8 129 65-205 79-213 (257)
90 cd05804 StaR_like StaR_like; a 98.4 4E-05 8.6E-10 68.8 18.3 175 67-254 21-216 (355)
91 PLN03088 SGT1, suppressor of 98.4 1.1E-05 2.5E-10 72.7 14.3 95 104-206 16-116 (356)
92 COG5010 TadD Flp pilus assembl 98.4 1.1E-05 2.4E-10 67.8 13.0 118 58-187 106-227 (257)
93 KOG1128 Uncharacterized conser 98.4 4.8E-05 1E-09 72.1 18.4 164 67-254 439-617 (777)
94 CHL00033 ycf3 photosystem I as 98.4 1.9E-05 4.2E-10 63.4 14.1 115 66-188 13-139 (168)
95 KOG1127 TPR repeat-containing 98.4 1.3E-05 2.7E-10 78.2 14.9 172 65-252 471-658 (1238)
96 PF13414 TPR_11: TPR repeat; P 98.4 1.8E-06 4E-11 58.4 6.8 61 122-190 3-66 (69)
97 KOG0548 Molecular co-chaperone 98.3 4.3E-05 9.2E-10 70.1 17.3 194 57-267 229-471 (539)
98 PRK02603 photosystem I assembl 98.3 1.7E-05 3.7E-10 63.9 13.4 79 84-170 33-118 (172)
99 PRK14720 transcript cleavage f 98.3 2.6E-05 5.6E-10 77.1 16.8 159 64-260 43-205 (906)
100 smart00671 SEL1 Sel1-like repe 98.3 1.3E-06 2.9E-11 51.1 4.4 34 159-192 2-35 (36)
101 COG4235 Cytochrome c biogenesi 98.2 4.1E-05 8.9E-10 65.8 13.9 119 66-193 136-258 (287)
102 TIGR02795 tol_pal_ybgF tol-pal 98.2 3E-05 6.5E-10 57.8 11.8 93 87-191 3-105 (119)
103 PF12895 Apc3: Anaphase-promot 98.2 6.5E-06 1.4E-10 58.1 7.6 79 66-152 3-84 (84)
104 PRK14720 transcript cleavage f 98.2 0.00022 4.8E-09 70.6 20.4 61 121-190 115-177 (906)
105 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.6E-05 7.7E-10 57.3 11.9 83 65-155 15-105 (119)
106 PF13414 TPR_11: TPR repeat; P 98.2 7.4E-06 1.6E-10 55.3 7.4 62 157-226 2-66 (69)
107 PF08238 Sel1: Sel1 repeat; I 98.2 2.2E-06 4.7E-11 51.1 4.1 36 158-193 1-39 (39)
108 KOG4162 Predicted calmodulin-b 98.2 0.00029 6.3E-09 67.3 19.9 105 144-254 668-784 (799)
109 cd00189 TPR Tetratricopeptide 98.2 2.2E-05 4.8E-10 54.6 9.9 89 89-189 3-95 (100)
110 cd00189 TPR Tetratricopeptide 98.2 2.7E-05 5.9E-10 54.1 10.3 81 65-153 13-95 (100)
111 KOG1174 Anaphase-promoting com 98.1 0.00063 1.4E-08 61.0 19.3 196 61-270 241-452 (564)
112 KOG0548 Molecular co-chaperone 98.1 0.0003 6.6E-09 64.6 17.9 127 67-205 339-471 (539)
113 smart00671 SEL1 Sel1-like repe 98.1 5.2E-06 1.1E-10 48.4 4.5 34 123-156 2-35 (36)
114 KOG1128 Uncharacterized conser 98.1 3.9E-05 8.4E-10 72.7 12.4 142 37-190 470-615 (777)
115 PLN03081 pentatricopeptide (PP 98.1 0.00015 3.2E-09 71.3 17.3 167 66-252 273-454 (697)
116 KOG0495 HAT repeat protein [RN 98.1 7E-05 1.5E-09 70.3 13.9 180 66-257 665-850 (913)
117 KOG1127 TPR repeat-containing 98.1 0.00018 3.8E-09 70.5 16.6 178 32-226 473-658 (1238)
118 KOG0553 TPR repeat-containing 98.1 2.2E-05 4.7E-10 67.3 9.4 103 57-167 86-192 (304)
119 PLN03081 pentatricopeptide (PP 98.1 0.00013 2.8E-09 71.7 16.1 112 66-190 304-419 (697)
120 PRK11906 transcriptional regul 98.1 0.00026 5.6E-09 64.6 16.2 164 82-254 244-437 (458)
121 PF12895 Apc3: Anaphase-promot 98.0 2.3E-05 4.9E-10 55.3 7.2 75 105-188 4-84 (84)
122 KOG0553 TPR repeat-containing 98.0 2.6E-05 5.7E-10 66.9 8.7 130 22-157 86-217 (304)
123 PF12688 TPR_5: Tetratrico pep 98.0 0.00015 3.3E-09 54.8 11.9 92 87-190 2-103 (120)
124 KOG3060 Uncharacterized conser 98.0 0.00055 1.2E-08 57.6 15.9 145 68-226 68-219 (289)
125 PF13432 TPR_16: Tetratricopep 98.0 1E-05 2.3E-10 54.0 4.8 50 66-119 11-60 (65)
126 PF08238 Sel1: Sel1 repeat; I 98.0 9.6E-06 2.1E-10 48.3 4.1 34 123-156 2-38 (39)
127 PRK15331 chaperone protein Sic 98.0 7.5E-05 1.6E-09 59.0 10.0 82 66-155 51-134 (165)
128 PF12688 TPR_5: Tetratrico pep 98.0 0.00028 6.1E-09 53.3 12.6 93 122-226 1-103 (120)
129 PRK10803 tol-pal system protei 98.0 7.8E-05 1.7E-09 64.3 10.8 99 82-192 138-247 (263)
130 PF13424 TPR_12: Tetratricopep 98.0 2.6E-05 5.7E-10 54.0 6.5 59 123-189 6-73 (78)
131 KOG3060 Uncharacterized conser 98.0 0.00012 2.6E-09 61.5 11.2 160 31-201 66-232 (289)
132 KOG0550 Molecular chaperone (D 98.0 0.00018 3.9E-09 64.3 12.6 230 24-270 56-368 (486)
133 PF13424 TPR_12: Tetratricopep 97.9 3.8E-05 8.3E-10 53.2 6.8 61 158-226 5-74 (78)
134 PRK15331 chaperone protein Sic 97.9 0.00017 3.6E-09 57.1 11.0 98 84-193 35-136 (165)
135 PRK10153 DNA-binding transcrip 97.9 0.00045 9.8E-09 65.3 15.7 137 81-226 332-481 (517)
136 PF09976 TPR_21: Tetratricopep 97.9 0.00024 5.3E-09 55.5 11.8 134 3-153 6-145 (145)
137 KOG4162 Predicted calmodulin-b 97.9 0.00015 3.4E-09 69.1 12.3 117 66-192 664-784 (799)
138 PRK10803 tol-pal system protei 97.9 0.00042 9.2E-09 59.8 14.1 96 119-226 139-245 (263)
139 PRK10866 outer membrane biogen 97.9 0.0015 3.3E-08 55.8 17.1 133 66-206 46-224 (243)
140 PF12569 NARP1: NMDA receptor- 97.9 0.0039 8.5E-08 58.9 21.0 187 30-226 17-256 (517)
141 PF13432 TPR_16: Tetratricopep 97.9 5.5E-05 1.2E-09 50.4 6.3 57 127-191 2-60 (65)
142 PF14559 TPR_19: Tetratricopep 97.9 7.3E-05 1.6E-09 50.2 6.8 62 65-130 4-67 (68)
143 KOG0495 HAT repeat protein [RN 97.9 0.0078 1.7E-07 57.1 21.9 76 143-226 635-713 (913)
144 KOG3617 WD40 and TPR repeat-co 97.8 0.0017 3.6E-08 62.8 17.7 91 124-226 860-995 (1416)
145 PF06552 TOM20_plant: Plant sp 97.8 0.00015 3.2E-09 58.1 8.3 82 68-149 7-96 (186)
146 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 0.00011 2.4E-09 66.9 8.2 70 81-158 70-144 (453)
147 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 0.00014 3E-09 66.3 8.8 68 50-121 73-143 (453)
148 PLN03077 Protein ECB2; Provisi 97.8 0.0017 3.8E-08 65.4 17.6 169 67-252 303-483 (857)
149 KOG3617 WD40 and TPR repeat-co 97.7 0.0016 3.4E-08 63.1 15.8 31 155-189 964-994 (1416)
150 COG4783 Putative Zn-dependent 97.7 0.0038 8.3E-08 57.1 17.3 147 83-254 303-455 (484)
151 COG4783 Putative Zn-dependent 97.7 0.0073 1.6E-07 55.3 18.5 147 119-277 303-463 (484)
152 PF13431 TPR_17: Tetratricopep 97.6 7.2E-05 1.6E-09 43.2 3.4 33 74-110 1-33 (34)
153 PLN03077 Protein ECB2; Provisi 97.6 0.0035 7.6E-08 63.2 17.6 199 30-249 402-650 (857)
154 KOG4340 Uncharacterized conser 97.6 0.0015 3.2E-08 56.4 12.0 77 144-228 130-208 (459)
155 COG3071 HemY Uncharacterized e 97.6 0.039 8.5E-07 49.4 21.0 239 23-273 90-378 (400)
156 COG4785 NlpI Lipoprotein NlpI, 97.6 0.019 4.1E-07 47.6 17.5 191 53-254 66-267 (297)
157 KOG1586 Protein required for f 97.5 0.017 3.8E-07 48.2 16.4 149 31-206 28-207 (288)
158 KOG1156 N-terminal acetyltrans 97.4 0.058 1.3E-06 51.2 21.3 156 10-187 9-168 (700)
159 PRK04841 transcriptional regul 97.4 0.012 2.6E-07 59.6 18.5 213 29-257 464-764 (903)
160 COG4235 Cytochrome c biogenesi 97.4 0.0061 1.3E-07 52.7 13.7 107 107-222 139-251 (287)
161 KOG0550 Molecular chaperone (D 97.4 0.0039 8.4E-08 56.0 12.6 154 30-192 182-351 (486)
162 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.0049 1.1E-07 56.2 13.0 108 64-186 181-292 (395)
163 PF13371 TPR_9: Tetratricopept 97.3 0.0014 3E-08 44.5 7.2 60 65-128 8-69 (73)
164 COG1729 Uncharacterized protei 97.3 0.0057 1.2E-07 52.2 11.7 91 89-191 144-244 (262)
165 KOG0624 dsRNA-activated protei 97.2 0.098 2.1E-06 46.3 18.8 161 54-226 40-217 (504)
166 PRK04841 transcriptional regul 97.2 0.029 6.3E-07 56.8 18.4 182 29-226 421-640 (903)
167 KOG0543 FKBP-type peptidyl-pro 97.1 0.0063 1.4E-07 54.6 11.3 77 122-206 257-337 (397)
168 KOG4555 TPR repeat-containing 97.1 0.015 3.2E-07 44.4 11.5 90 104-201 57-154 (175)
169 PRK10866 outer membrane biogen 97.1 0.1 2.3E-06 44.5 18.4 100 84-191 30-153 (243)
170 PF13525 YfiO: Outer membrane 97.1 0.064 1.4E-06 44.4 16.3 100 84-191 3-119 (203)
171 PF13525 YfiO: Outer membrane 97.1 0.02 4.4E-07 47.4 13.2 133 66-206 19-190 (203)
172 KOG1586 Protein required for f 97.0 0.053 1.1E-06 45.4 14.9 130 67-226 29-182 (288)
173 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.016 3.4E-07 52.9 13.1 109 104-225 183-295 (395)
174 KOG4555 TPR repeat-containing 97.0 0.011 2.4E-07 45.0 9.9 92 66-165 57-154 (175)
175 PF06552 TOM20_plant: Plant sp 97.0 0.0052 1.1E-07 49.3 8.6 100 143-261 8-117 (186)
176 KOG1941 Acetylcholine receptor 97.0 0.064 1.4E-06 47.8 15.8 139 56-206 126-298 (518)
177 PF04184 ST7: ST7 protein; In 97.0 0.022 4.7E-07 52.6 13.3 123 32-187 167-320 (539)
178 PF14559 TPR_19: Tetratricopep 97.0 0.0026 5.6E-08 42.5 5.7 47 141-191 6-54 (68)
179 COG1729 Uncharacterized protei 96.9 0.016 3.4E-07 49.5 11.3 89 125-225 144-242 (262)
180 PF13371 TPR_9: Tetratricopept 96.9 0.0043 9.3E-08 42.0 6.3 50 139-192 8-59 (73)
181 COG3071 HemY Uncharacterized e 96.9 0.02 4.3E-07 51.2 11.7 114 62-190 273-389 (400)
182 PF04733 Coatomer_E: Coatomer 96.8 0.0062 1.4E-07 53.4 8.2 127 64-206 114-247 (290)
183 PF13428 TPR_14: Tetratricopep 96.8 0.0012 2.7E-08 40.3 2.7 30 65-94 14-43 (44)
184 KOG0543 FKBP-type peptidyl-pro 96.8 0.023 5.1E-07 51.0 11.4 113 66-190 222-354 (397)
185 COG0457 NrfG FOG: TPR repeat [ 96.7 0.22 4.7E-06 39.6 19.2 175 66-256 73-268 (291)
186 PF13281 DUF4071: Domain of un 96.7 0.36 7.8E-06 43.7 18.7 107 61-168 150-269 (374)
187 KOG0624 dsRNA-activated protei 96.7 0.25 5.3E-06 43.9 17.0 168 30-206 51-235 (504)
188 PF13428 TPR_14: Tetratricopep 96.7 0.0041 8.8E-08 37.9 4.5 40 159-202 2-43 (44)
189 KOG1156 N-terminal acetyltrans 96.6 0.081 1.8E-06 50.2 14.5 110 66-187 21-134 (700)
190 KOG1941 Acetylcholine receptor 96.6 0.11 2.3E-06 46.4 13.8 150 61-226 92-274 (518)
191 PF07719 TPR_2: Tetratricopept 96.3 0.0084 1.8E-07 33.9 4.1 30 158-191 1-30 (34)
192 PF00515 TPR_1: Tetratricopept 96.3 0.0087 1.9E-07 34.0 4.1 29 159-191 2-30 (34)
193 PF13431 TPR_17: Tetratricopep 96.3 0.0036 7.8E-08 36.0 2.4 15 120-134 11-25 (34)
194 KOG1585 Protein required for f 96.1 0.78 1.7E-05 38.9 16.8 188 30-246 24-249 (308)
195 PF13176 TPR_7: Tetratricopept 96.0 0.013 2.7E-07 34.1 3.8 26 160-189 1-26 (36)
196 PF10300 DUF3808: Protein of u 96.0 0.5 1.1E-05 44.4 16.2 150 29-190 200-375 (468)
197 KOG2471 TPR repeat-containing 96.0 0.054 1.2E-06 50.0 9.2 128 66-205 220-380 (696)
198 PF04733 Coatomer_E: Coatomer 96.0 0.063 1.4E-06 47.1 9.6 142 30-187 115-261 (290)
199 PF12569 NARP1: NMDA receptor- 95.9 0.27 5.8E-06 46.7 14.2 124 55-190 197-333 (517)
200 COG4785 NlpI Lipoprotein NlpI, 95.9 0.84 1.8E-05 38.1 15.6 157 53-226 100-265 (297)
201 COG4700 Uncharacterized protei 95.8 0.86 1.9E-05 37.2 18.1 147 86-253 89-244 (251)
202 KOG1070 rRNA processing protei 95.7 3.2 6.9E-05 43.4 21.7 188 61-267 1467-1679(1710)
203 KOG1915 Cell cycle control pro 95.4 1 2.2E-05 41.8 15.2 180 5-190 382-584 (677)
204 PF10300 DUF3808: Protein of u 95.4 1.1 2.5E-05 42.0 16.1 118 103-228 246-377 (468)
205 KOG2047 mRNA splicing factor [ 95.4 0.48 1E-05 45.4 13.2 135 68-206 493-630 (835)
206 PF13181 TPR_8: Tetratricopept 95.4 0.038 8.2E-07 31.2 4.1 28 159-190 2-29 (34)
207 COG0457 NrfG FOG: TPR repeat [ 95.3 1.1 2.3E-05 35.4 17.6 149 62-226 105-264 (291)
208 KOG4340 Uncharacterized conser 95.2 0.68 1.5E-05 40.5 12.6 151 30-192 23-208 (459)
209 PF13281 DUF4071: Domain of un 95.2 0.61 1.3E-05 42.2 13.0 132 65-198 195-340 (374)
210 PF07719 TPR_2: Tetratricopept 95.1 0.051 1.1E-06 30.5 4.1 29 194-226 1-29 (34)
211 KOG2376 Signal recognition par 95.1 1.7 3.7E-05 41.3 15.9 204 29-254 24-254 (652)
212 PF00515 TPR_1: Tetratricopept 95.1 0.052 1.1E-06 30.6 4.1 29 194-226 1-29 (34)
213 KOG2047 mRNA splicing factor [ 95.1 2.5 5.4E-05 40.7 16.9 202 15-226 385-614 (835)
214 KOG2376 Signal recognition par 94.9 2.7 5.8E-05 40.0 16.6 171 30-226 59-252 (652)
215 KOG4642 Chaperone-dependent E3 94.7 0.18 3.9E-06 42.5 7.6 90 57-154 15-106 (284)
216 KOG4642 Chaperone-dependent E3 94.4 0.088 1.9E-06 44.3 5.2 92 22-118 15-106 (284)
217 PF13512 TPR_18: Tetratricopep 94.3 1.9 4.1E-05 33.5 12.0 78 121-206 9-96 (142)
218 COG3898 Uncharacterized membra 94.2 4.2 9.1E-05 37.0 17.8 155 27-191 130-292 (531)
219 PF13176 TPR_7: Tetratricopept 94.2 0.1 2.2E-06 30.1 3.8 26 196-225 1-26 (36)
220 PF13174 TPR_6: Tetratricopept 94.1 0.079 1.7E-06 29.4 3.2 29 159-191 1-29 (33)
221 PF10373 EST1_DNA_bind: Est1 D 94.0 0.2 4.3E-06 43.2 6.9 60 71-134 1-62 (278)
222 KOG3785 Uncharacterized conser 93.9 2.5 5.5E-05 37.9 13.4 79 30-116 35-117 (557)
223 COG4105 ComL DNA uptake lipopr 93.8 3.8 8.2E-05 35.0 19.6 150 33-206 31-216 (254)
224 PF08631 SPO22: Meiosis protei 93.6 4.4 9.6E-05 35.2 17.2 16 236-251 258-273 (278)
225 PF13374 TPR_10: Tetratricopep 93.5 0.17 3.8E-06 29.6 4.1 28 159-190 3-30 (42)
226 KOG3081 Vesicle coat complex C 93.4 4.1 9E-05 35.1 13.4 128 65-205 121-252 (299)
227 KOG1070 rRNA processing protei 93.3 12 0.00027 39.4 20.2 178 30-227 1471-1663(1710)
228 PF11207 DUF2989: Protein of u 93.3 4.1 8.8E-05 33.6 14.9 70 143-221 123-201 (203)
229 KOG2796 Uncharacterized conser 93.2 4.1 8.9E-05 35.1 13.0 141 53-205 178-334 (366)
230 PF13181 TPR_8: Tetratricopept 93.2 0.22 4.8E-06 27.9 4.0 28 195-226 2-29 (34)
231 PF09986 DUF2225: Uncharacteri 93.0 0.91 2E-05 37.9 9.1 57 160-224 120-191 (214)
232 PF05843 Suf: Suppressor of fo 92.9 1.1 2.3E-05 39.1 9.8 114 67-191 16-136 (280)
233 PF13512 TPR_18: Tetratricopep 92.8 3.7 7.9E-05 31.9 12.1 79 84-170 8-96 (142)
234 KOG4234 TPR repeat-containing 92.3 1.5 3.2E-05 36.2 9.0 85 63-155 106-197 (271)
235 KOG3785 Uncharacterized conser 92.2 1.1 2.3E-05 40.1 8.7 85 62-154 32-119 (557)
236 KOG1585 Protein required for f 92.1 5.4 0.00012 34.0 12.3 154 84-254 29-220 (308)
237 COG4700 Uncharacterized protei 92.1 2.4 5.2E-05 34.7 9.8 115 57-183 94-214 (251)
238 PF11207 DUF2989: Protein of u 91.6 1.5 3.3E-05 36.0 8.5 71 105-184 121-200 (203)
239 KOG3824 Huntingtin interacting 91.6 0.43 9.4E-06 41.8 5.5 61 66-130 130-192 (472)
240 smart00028 TPR Tetratricopepti 91.5 0.25 5.3E-06 26.1 2.8 29 159-191 2-30 (34)
241 PF09986 DUF2225: Uncharacteri 90.9 2.5 5.4E-05 35.3 9.3 48 142-193 141-196 (214)
242 COG2976 Uncharacterized protei 90.5 4.4 9.5E-05 33.2 10.0 88 175-266 102-201 (207)
243 PF13174 TPR_6: Tetratricopept 90.5 0.53 1.1E-05 25.9 3.6 28 195-226 1-28 (33)
244 KOG0551 Hsp90 co-chaperone CNS 89.2 1.1 2.4E-05 39.7 6.0 91 24-118 88-181 (390)
245 PF13374 TPR_10: Tetratricopep 87.8 1.5 3.3E-05 25.3 4.4 29 194-226 2-30 (42)
246 COG3118 Thioredoxin domain-con 87.0 20 0.00044 31.4 13.5 125 55-191 137-265 (304)
247 PF03704 BTAD: Bacterial trans 86.1 13 0.00029 28.4 12.6 45 68-116 78-122 (146)
248 KOG3364 Membrane protein invol 85.9 3.1 6.7E-05 32.0 6.0 78 7-90 31-109 (149)
249 PF09205 DUF1955: Domain of un 85.1 6.4 0.00014 30.3 7.3 42 155-200 117-158 (161)
250 PF07721 TPR_4: Tetratricopept 85.0 1.1 2.3E-05 23.7 2.4 24 159-186 2-25 (26)
251 smart00028 TPR Tetratricopepti 84.8 1.3 2.8E-05 23.0 2.9 27 195-225 2-28 (34)
252 KOG2041 WD40 repeat protein [G 84.7 30 0.00064 34.2 13.1 39 122-164 796-835 (1189)
253 PF10602 RPN7: 26S proteasome 84.6 11 0.00023 30.4 9.1 58 123-188 37-99 (177)
254 PF14561 TPR_20: Tetratricopep 84.6 4.1 8.9E-05 28.9 5.9 44 72-119 8-51 (90)
255 PF10373 EST1_DNA_bind: Est1 D 84.1 2.5 5.3E-05 36.3 5.6 58 109-170 1-62 (278)
256 KOG3824 Huntingtin interacting 83.9 1.3 2.8E-05 38.9 3.6 83 9-94 110-192 (472)
257 KOG0687 26S proteasome regulat 83.2 2.7 5.9E-05 37.2 5.3 90 158-251 104-208 (393)
258 KOG4234 TPR repeat-containing 82.7 17 0.00037 30.2 9.3 94 104-205 109-211 (271)
259 KOG1308 Hsp70-interacting prot 82.0 0.88 1.9E-05 40.4 1.9 86 68-161 130-217 (377)
260 PF05843 Suf: Suppressor of fo 81.9 5.5 0.00012 34.7 6.9 111 106-226 17-135 (280)
261 cd02679 MIT_spastin MIT: domai 80.9 2.5 5.5E-05 29.3 3.5 35 30-80 2-36 (79)
262 KOG4648 Uncharacterized conser 80.1 6.8 0.00015 35.1 6.6 57 127-191 102-160 (536)
263 PF14853 Fis1_TPR_C: Fis1 C-te 79.7 3.7 8.1E-05 26.0 3.7 32 64-95 13-44 (53)
264 PF03704 BTAD: Bacterial trans 78.8 19 0.00041 27.5 8.4 58 159-224 63-122 (146)
265 KOG4507 Uncharacterized conser 78.5 9.6 0.00021 36.6 7.5 79 105-191 622-705 (886)
266 KOG4648 Uncharacterized conser 78.4 5 0.00011 35.9 5.3 53 62-118 107-159 (536)
267 KOG1915 Cell cycle control pro 78.3 62 0.0013 30.6 22.3 249 4-261 189-474 (677)
268 PF04190 DUF410: Protein of un 77.9 44 0.00096 28.7 13.0 108 30-152 3-116 (260)
269 COG4105 ComL DNA uptake lipopr 77.9 44 0.00095 28.7 16.5 129 86-226 34-195 (254)
270 cd02680 MIT_calpain7_2 MIT: do 77.8 5.1 0.00011 27.5 4.2 32 142-190 3-34 (75)
271 KOG0376 Serine-threonine phosp 77.5 4.3 9.4E-05 37.7 4.9 97 28-129 15-113 (476)
272 PF04781 DUF627: Protein of un 76.9 21 0.00044 26.5 7.4 20 28-47 7-26 (111)
273 PF04184 ST7: ST7 protein; In 76.6 64 0.0014 30.5 12.1 146 104-263 182-385 (539)
274 KOG2471 TPR repeat-containing 76.4 10 0.00023 35.5 7.0 114 66-193 523-650 (696)
275 PF12968 DUF3856: Domain of Un 75.7 4.2 9.2E-05 30.6 3.6 49 142-190 78-128 (144)
276 COG2976 Uncharacterized protei 73.2 51 0.0011 27.2 13.2 89 104-200 103-197 (207)
277 cd02680 MIT_calpain7_2 MIT: do 73.1 9.1 0.0002 26.2 4.5 32 33-80 3-34 (75)
278 PF02259 FAT: FAT domain; Int 73.0 15 0.00032 32.5 7.2 79 86-164 252-347 (352)
279 smart00386 HAT HAT (Half-A-TPR 72.5 11 0.00023 20.1 4.1 29 67-95 2-30 (33)
280 KOG0551 Hsp90 co-chaperone CNS 72.1 21 0.00046 31.9 7.5 86 129-226 88-181 (390)
281 PF10602 RPN7: 26S proteasome 72.0 50 0.0011 26.5 9.9 92 86-189 36-140 (177)
282 PF02259 FAT: FAT domain; Int 72.0 69 0.0015 28.1 18.7 135 122-264 146-349 (352)
283 KOG3081 Vesicle coat complex C 71.7 68 0.0015 27.9 14.1 117 127-254 113-237 (299)
284 PF08631 SPO22: Meiosis protei 70.8 69 0.0015 27.7 16.4 54 65-118 6-64 (278)
285 TIGR03504 FimV_Cterm FimV C-te 69.9 22 0.00047 21.5 5.6 31 162-196 3-33 (44)
286 PF12862 Apc5: Anaphase-promot 69.9 22 0.00048 25.1 6.2 29 158-190 41-69 (94)
287 KOG1308 Hsp70-interacting prot 69.5 4.3 9.3E-05 36.2 2.8 80 106-193 130-213 (377)
288 KOG0376 Serine-threonine phosp 69.3 10 0.00022 35.3 5.2 93 65-165 17-113 (476)
289 KOG4507 Uncharacterized conser 68.0 8.9 0.00019 36.8 4.6 57 68-128 658-716 (886)
290 KOG2053 Mitochondrial inherita 68.0 1.4E+02 0.0031 30.3 16.4 81 66-150 57-138 (932)
291 KOG4814 Uncharacterized conser 68.0 75 0.0016 31.1 10.6 95 86-188 347-454 (872)
292 PF12862 Apc5: Anaphase-promot 66.4 24 0.00052 25.0 5.8 48 175-226 11-69 (94)
293 KOG2610 Uncharacterized conser 65.3 41 0.00088 30.3 7.9 76 105-188 190-273 (491)
294 KOG2041 WD40 repeat protein [G 65.0 97 0.0021 30.8 10.8 31 156-190 794-824 (1189)
295 PF12968 DUF3856: Domain of Un 64.7 21 0.00045 27.0 5.1 45 107-155 79-129 (144)
296 KOG3616 Selective LIM binding 63.6 1.7E+02 0.0037 29.5 14.9 68 176-247 977-1057(1636)
297 PF04212 MIT: MIT (microtubule 63.5 15 0.00032 24.4 4.0 12 68-79 21-32 (69)
298 PF07720 TPR_3: Tetratricopept 62.3 24 0.00052 20.3 4.1 21 160-184 3-23 (36)
299 KOG2796 Uncharacterized conser 62.3 83 0.0018 27.4 8.9 101 62-170 222-335 (366)
300 KOG2300 Uncharacterized conser 62.0 1.5E+02 0.0032 28.2 11.8 128 86-223 5-152 (629)
301 PHA02537 M terminase endonucle 61.7 96 0.0021 26.2 9.3 47 66-121 97-144 (230)
302 KOG4814 Uncharacterized conser 60.9 49 0.0011 32.3 8.0 75 139-221 367-451 (872)
303 COG4976 Predicted methyltransf 60.4 22 0.00049 30.1 5.2 63 65-131 8-73 (287)
304 cd02681 MIT_calpain7_1 MIT: do 59.9 15 0.00034 25.1 3.6 16 175-190 19-34 (76)
305 KOG1914 mRNA cleavage and poly 59.6 1.7E+02 0.0037 28.2 12.0 151 32-191 308-464 (656)
306 PF10952 DUF2753: Protein of u 59.4 50 0.0011 25.1 6.3 29 158-190 50-78 (140)
307 cd02683 MIT_1 MIT: domain cont 59.2 19 0.00042 24.6 4.0 31 143-190 4-34 (77)
308 PF09613 HrpB1_HrpK: Bacterial 59.0 90 0.0019 24.8 10.3 66 33-99 26-91 (160)
309 cd02684 MIT_2 MIT: domain cont 59.0 21 0.00045 24.3 4.1 32 142-190 3-34 (75)
310 KOG0545 Aryl-hydrocarbon recep 58.7 1.2E+02 0.0026 26.2 12.3 114 55-194 181-296 (329)
311 PF12753 Nro1: Nuclear pore co 57.5 34 0.00074 31.3 6.2 32 175-206 331-362 (404)
312 cd02681 MIT_calpain7_1 MIT: do 56.5 21 0.00045 24.5 3.7 13 68-80 22-34 (76)
313 PRK13184 pknD serine/threonine 55.9 65 0.0014 33.2 8.6 47 141-191 534-581 (932)
314 PF09205 DUF1955: Domain of un 54.9 99 0.0021 24.0 11.2 41 120-164 118-158 (161)
315 smart00745 MIT Microtubule Int 54.9 22 0.00048 24.0 3.7 13 33-45 5-17 (77)
316 KOG3783 Uncharacterized conser 54.2 56 0.0012 31.1 7.2 56 162-224 453-517 (546)
317 PF04190 DUF410: Protein of un 54.1 1.4E+02 0.0031 25.6 14.4 106 66-188 4-116 (260)
318 PF05053 Menin: Menin; InterP 53.9 52 0.0011 31.5 7.0 65 84-154 275-346 (618)
319 KOG0890 Protein kinase of the 53.1 3.3E+02 0.0073 31.1 13.4 134 121-266 1669-1846(2382)
320 KOG0545 Aryl-hydrocarbon recep 52.8 1.5E+02 0.0033 25.6 9.5 90 26-119 187-293 (329)
321 KOG2610 Uncharacterized conser 52.3 1.8E+02 0.004 26.3 16.2 143 67-225 118-274 (491)
322 PF14853 Fis1_TPR_C: Fis1 C-te 52.1 34 0.00073 21.6 3.9 35 159-197 2-38 (53)
323 cd02684 MIT_2 MIT: domain cont 50.4 37 0.00079 23.1 4.2 12 34-45 4-15 (75)
324 PF14561 TPR_20: Tetratricopep 49.5 51 0.0011 23.2 5.0 33 119-155 19-51 (90)
325 PF10516 SHNi-TPR: SHNi-TPR; 47.9 33 0.00072 20.0 3.2 27 160-190 3-29 (38)
326 PF12753 Nro1: Nuclear pore co 47.9 26 0.00056 32.0 4.0 16 142-157 378-393 (404)
327 cd02678 MIT_VPS4 MIT: domain c 47.8 35 0.00077 23.1 3.8 9 35-43 5-13 (75)
328 COG5187 RPN7 26S proteasome re 47.4 36 0.00078 30.0 4.5 26 158-187 115-140 (412)
329 COG3898 Uncharacterized membra 46.9 2.4E+02 0.0052 26.1 16.8 191 24-233 195-402 (531)
330 KOG3364 Membrane protein invol 46.6 1.4E+02 0.003 23.2 8.2 31 159-190 33-63 (149)
331 cd02683 MIT_1 MIT: domain cont 44.4 1E+02 0.0022 21.1 6.8 12 34-45 4-15 (77)
332 KOG0687 26S proteasome regulat 44.3 2.4E+02 0.0052 25.4 11.1 93 85-190 103-209 (393)
333 PF04053 Coatomer_WDAD: Coatom 43.6 2.8E+02 0.0061 26.0 10.5 29 156-188 345-373 (443)
334 cd02656 MIT MIT: domain contai 42.3 47 0.001 22.3 3.8 12 68-79 22-33 (75)
335 PF10952 DUF2753: Protein of u 42.3 1.4E+02 0.0031 22.7 6.4 30 194-227 50-79 (140)
336 PF07739 TipAS: TipAS antibiot 41.9 1.3E+02 0.0028 21.8 6.5 15 120-134 76-90 (118)
337 cd02677 MIT_SNX15 MIT: domain 41.8 69 0.0015 21.8 4.5 11 68-78 22-32 (75)
338 COG4976 Predicted methyltransf 41.3 47 0.001 28.2 4.2 67 29-96 7-74 (287)
339 KOG2053 Mitochondrial inherita 40.9 2.7E+02 0.0059 28.4 9.9 110 65-186 22-138 (932)
340 COG3118 Thioredoxin domain-con 40.7 2.5E+02 0.0054 24.8 8.7 107 104-222 148-260 (304)
341 PF12583 TPPII_N: Tripeptidyl 39.0 64 0.0014 24.7 4.2 30 68-97 92-121 (139)
342 PF05053 Menin: Menin; InterP 38.8 1.3E+02 0.0028 29.0 7.1 64 121-190 276-346 (618)
343 cd02682 MIT_AAA_Arch MIT: doma 38.2 1.3E+02 0.0028 20.6 6.6 22 69-90 30-51 (75)
344 PRK14700 recombination factor 37.9 2.9E+02 0.0062 24.4 10.1 64 104-167 140-207 (300)
345 KOG3807 Predicted membrane pro 37.0 3.2E+02 0.007 24.7 9.7 48 67-120 199-246 (556)
346 TIGR02561 HrpB1_HrpK type III 36.8 1.4E+02 0.003 23.5 5.9 33 66-98 58-90 (153)
347 KOG3783 Uncharacterized conser 35.7 1.5E+02 0.0033 28.3 7.0 107 52-165 414-531 (546)
348 PF04910 Tcf25: Transcriptiona 35.5 1.7E+02 0.0036 26.6 7.3 26 240-265 209-234 (360)
349 KOG0276 Vesicle coat complex C 35.3 4.5E+02 0.0097 25.9 10.1 70 70-154 625-694 (794)
350 KOG0985 Vesicle coat protein c 34.2 5.9E+02 0.013 27.0 18.6 100 67-191 1063-1162(1666)
351 KOG0739 AAA+-type ATPase [Post 33.8 2E+02 0.0043 25.7 7.0 60 142-224 7-68 (439)
352 KOG1839 Uncharacterized protei 33.4 4.8E+02 0.01 27.9 10.6 163 69-248 955-1148(1236)
353 PRK13184 pknD serine/threonine 32.3 2E+02 0.0043 29.8 7.8 83 140-226 489-580 (932)
354 KOG4521 Nuclear pore complex, 31.8 1.8E+02 0.004 30.7 7.3 69 153-226 915-991 (1480)
355 KOG4279 Serine/threonine prote 30.8 1.9E+02 0.0041 29.2 6.9 71 26-97 252-331 (1226)
356 COG4649 Uncharacterized protei 30.8 3E+02 0.0065 22.5 11.5 125 68-204 74-210 (221)
357 PF04053 Coatomer_WDAD: Coatom 29.0 4.9E+02 0.011 24.4 12.5 88 156-257 319-406 (443)
358 PF04910 Tcf25: Transcriptiona 28.1 4.5E+02 0.0098 23.8 11.5 103 62-168 113-234 (360)
359 PF07064 RIC1: RIC1; InterPro 27.7 4E+02 0.0086 22.9 8.1 61 146-206 183-248 (258)
360 PF11846 DUF3366: Domain of un 26.0 2E+02 0.0044 23.1 5.7 46 142-191 127-173 (193)
361 KOG1839 Uncharacterized protei 25.7 8.4E+02 0.018 26.2 10.8 123 26-154 941-1085(1236)
362 COG4649 Uncharacterized protei 25.4 3.8E+02 0.0083 22.0 12.3 114 143-264 75-208 (221)
363 KOG2114 Vacuolar assembly/sort 25.3 6.8E+02 0.015 25.7 9.7 31 50-80 366-396 (933)
364 PF10579 Rapsyn_N: Rapsyn N-te 25.0 2.4E+02 0.0052 19.5 5.3 31 67-97 21-51 (80)
365 PRK14700 recombination factor 24.6 4.9E+02 0.011 23.0 12.9 81 178-265 126-207 (300)
366 KOG4521 Nuclear pore complex, 24.1 4.9E+02 0.011 27.8 8.7 66 120-190 918-991 (1480)
367 PRK10941 hypothetical protein; 23.0 4.1E+02 0.0089 23.0 7.2 60 62-125 191-252 (269)
368 KOG2300 Uncharacterized conser 22.9 6.8E+02 0.015 24.0 12.8 78 21-98 327-416 (629)
369 PRK10564 maltose regulon perip 22.9 1.8E+02 0.0039 25.7 4.9 39 218-262 257-295 (303)
370 PF04781 DUF627: Protein of un 22.5 3.3E+02 0.0071 20.2 6.1 23 66-88 10-32 (111)
371 PF07079 DUF1347: Protein of u 20.7 7.4E+02 0.016 23.6 15.4 123 67-224 395-521 (549)
372 KOG4279 Serine/threonine prote 20.6 2.9E+02 0.0064 27.9 6.2 69 101-169 254-331 (1226)
No 1
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.94 E-value=6.5e-25 Score=192.54 Aligned_cols=215 Identities=24% Similarity=0.207 Sum_probs=188.6
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 023425 55 DYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRV 134 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~ 134 (282)
.+..........++..+..+|+++.. .+++.+++.++.+|..+.+++++..+|+.||+++++.|++.++++||.+|..
T Consensus 44 ~~~~~~~~~~~~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~ 121 (292)
T COG0790 44 ALLNGAGSAYPPDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYAN 121 (292)
T ss_pred cccccccccccccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhc
Confidence 34444556677889999999999964 5788999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhcC---CCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 023425 135 ENDYVQSDQQAFYYIEKAVDQLHPGA---LYLLGTVYLTG---DCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGV 208 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~~g~~~A---~~~Lg~~y~~g---~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~ 208 (282)
|.++++|..+|..||.+|++.|++++ ++.||.+|..| .++..+.++|+.||.+|++.+++.++++||.+|..|.
T Consensus 122 G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~ 201 (292)
T COG0790 122 GRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGL 201 (292)
T ss_pred CCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCC
Confidence 98899999999999999999999999 99999999999 7888888899999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHH----Hchhch------hccC----------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 023425 209 QVPECLTKLNAKRVSAAKK----ARANLE------SNLM----------NPVEKAKEQFEVAAQAGCNLGLRWLQRIEEE 268 (282)
Q Consensus 209 g~~~~~~~A~~~~~~a~~~----a~~~lg------~~~~----------~~~~~A~~~~~~Aa~~g~~~a~~~l~~l~~~ 268 (282)
|+++|..+|+.||.+|++. +++.++ .+++ .+...|..|+.+++..|.+.++..+..+...
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALKIG 281 (292)
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 9999999999999999983 445554 2233 3999999999999999999999999966655
Q ss_pred Hhh
Q 023425 269 EKR 271 (282)
Q Consensus 269 ~~~ 271 (282)
...
T Consensus 282 ~~~ 284 (292)
T COG0790 282 LSA 284 (292)
T ss_pred hhC
Confidence 543
No 2
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.93 E-value=8.8e-24 Score=185.39 Aligned_cols=201 Identities=19% Similarity=0.166 Sum_probs=180.8
Q ss_pred hhcccchHHHHHHHHHHhhhh-hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcC
Q 023425 27 RWLHSRNKKAMELIAKGWSAL-KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGAC 105 (282)
Q Consensus 27 ~~~~~~~~~A~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~ 105 (282)
......+..+.+++.++.... ..........+..+.++..|..+|++||+++ ++.|++.+++.||.+|..|.++++|
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccC
Confidence 345677899999998876522 2344556777778999999999999999988 5679999999999999999889999
Q ss_pred HHHHHHHHHHHHhCCCHHH---HHHHHHHHhcC---CCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHH
Q 023425 106 KAMGAALLVDAANMGDPDA---QYELGCRLRVE---NDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIA 179 (282)
Q Consensus 106 ~~~A~~~~~~Aa~~g~~~A---~~~Lg~~y~~g---~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~ 179 (282)
..+|..||.+|++.|++++ ++.||.+|..| .++..+...|+.||.+|++.+++.+++.||.+|..|.|+++|++
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~ 208 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLK 208 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHH
Confidence 9999999999999999999 99999999999 66777888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc----------cHHHHHHHHHHHHHHHc
Q 023425 180 SALWCFHRASEKGHAGAAIAYGSLLLRGVQVPE----------CLTKLNAKRVSAAKKAR 229 (282)
Q Consensus 180 ~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~----------~~~~A~~~~~~a~~~a~ 229 (282)
+|+.||++|+++|+..++++++.+|..|.+++. +...|..|+.+++..+.
T Consensus 209 ~A~~wy~~Aa~~g~~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 209 KAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999988776 99999999999987443
No 3
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=3.5e-22 Score=188.91 Aligned_cols=245 Identities=24% Similarity=0.227 Sum_probs=201.8
Q ss_pred hhhhhcccchHHHHHHHHHHhhhhh-HHHHHHHHHhhcC-CCchhhHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHH
Q 023425 24 HQKRWLHSRNKKAMELIAKGWSALK-EVDRVIDYCELND-RRLIPLLKTAKENFELALE-----ADNSNTHARYWLSKLH 96 (282)
Q Consensus 24 ~~~~~~~~~~~~A~e~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~-----~~~g~~~a~~~Lg~~~ 96 (282)
+..+.-.+....|..|+..+..... ........+...+ .++..|+++|+.||+.+++ +..+++.|++.||.+|
T Consensus 219 ~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 219 GNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLY 298 (552)
T ss_pred CcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHH
Confidence 3333333356789999988766333 2333445566666 8999999999999999965 2357899999999999
Q ss_pred hcCCCCCc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCc
Q 023425 97 LKYHVPGA-CKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVK 175 (282)
Q Consensus 97 ~~~~~~~~-~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~ 175 (282)
..+.++.. |...|+.+|.+|++.|+++|++.||.+|..|. ..+|..+|.+||..|+..|++.|+++|+.||..|.|++
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT-KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVE 377 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcC
Confidence 99987777 99999999999999999999999999999988 55889999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-----------------------------
Q 023425 176 KDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----------------------------- 226 (282)
Q Consensus 176 ~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----------------------------- 226 (282)
.|.++|+.||++|++.|++.|++.++.++..|. +..+...+..|+.++..
T Consensus 378 r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred CCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchh
Confidence 999999999999999999999999999999987 55565555555555532
Q ss_pred ---------------HHchhch------hccCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh
Q 023425 227 ---------------KARANLE------SNLMNPVEKAKEQFEVAAQAGCNLGLRWLQRIEEEEKR 271 (282)
Q Consensus 227 ---------------~a~~~lg------~~~~~~~~~A~~~~~~Aa~~g~~~a~~~l~~l~~~~~~ 271 (282)
.+...|| .++..|+..|..+|.+|++++ ..++++|+.+.|..-.
T Consensus 457 ~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g 521 (552)
T KOG1550|consen 457 RAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEG 521 (552)
T ss_pred HHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcC
Confidence 0111233 346778999999999999999 9999999999986533
No 4
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=4.5e-22 Score=188.11 Aligned_cols=198 Identities=23% Similarity=0.176 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC-CCCCcCHHHHHHHHHHHHh-------CCCHHHHHHHHHHHhcCCCCc
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKY-HVPGACKAMGAALLVDAAN-------MGDPDAQYELGCRLRVENDYV 139 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~-~~~~~~~~~A~~~~~~Aa~-------~g~~~A~~~Lg~~y~~g~~~~ 139 (282)
...|+++|+.++ +.|+..+++.+|.+|..| .++.+|.+.|+.||+.|++ .|++.|++.||.+|..|..++
T Consensus 228 ~~~a~~~~~~~a--~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAA--KLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHH--hhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 688999999995 669999999999999999 8999999999999999998 899999999999999999888
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHH
Q 023425 140 Q-SDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLN 218 (282)
Q Consensus 140 ~-d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~ 218 (282)
+ |...|+.+|.+|++.|+++|++.||.+|..|. ..+|..+|++||..|+..|++.|+++++.||..|.|++.+.++|+
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT-KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred cccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 8 99999999999999999999999999999998 568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH----chhch----hccCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 023425 219 AKRVSAAKKA----RANLE----SNLMNPVEKAKEQFEVAAQAGCNLGLRWLQRIEEEE 269 (282)
Q Consensus 219 ~~~~~a~~~a----~~~lg----~~~~~~~~~A~~~~~~Aa~~g~~~a~~~l~~l~~~~ 269 (282)
.||+++++.+ .+.++ .++ +.+..+.-++...++.|++.++...+.+....
T Consensus 385 ~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~ 442 (552)
T KOG1550|consen 385 AYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQS 442 (552)
T ss_pred HHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhc
Confidence 9999999954 55555 234 77888888999999999999998888887765
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=4.3e-22 Score=181.03 Aligned_cols=233 Identities=18% Similarity=0.059 Sum_probs=173.9
Q ss_pred hhcchhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc
Q 023425 19 LQSNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLK 98 (282)
Q Consensus 19 ~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~ 98 (282)
+++|.+--....|+.-.|+..|.+++. +.+.....+++.|+.+.....++.|+..|.+|+...|+++.++-+||.+|.+
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvk-ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye 298 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVK-LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE 298 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhc-CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEec
Confidence 334444444444444455555544444 2222234444444444444555555555555555555555555555555543
Q ss_pred CCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCC
Q 023425 99 YHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCV 174 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~ 174 (282)
. .+.+.|+..|++|++ +.+++|+.|||..+.+.+.+ .+|..+|.+|... .+++++++||.+|.+
T Consensus 299 q----G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V----~ea~~cYnkaL~l~p~hadam~NLgni~~E---- 366 (966)
T KOG4626|consen 299 Q----GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSV----TEAVDCYNKALRLCPNHADAMNNLGNIYRE---- 366 (966)
T ss_pred c----ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccch----HHHHHHHHHHHHhCCccHHHHHHHHHHHHH----
Confidence 3 345899999999974 67999999999999987777 9999999999987 799999999999999
Q ss_pred ccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchhc--cCCCHHHHH
Q 023425 175 KKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLESN--LMNPVEKAK 244 (282)
Q Consensus 175 ~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~~--~~~~~~~A~ 244 (282)
.+.++.|..+|++|.+- +.+.|+.|||.+|.+ ++++++|+..|+.|+. +++.|+|.. +.++...|+
T Consensus 367 ~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq----qgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ----QGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh----cccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 89999999999999774 678899999999998 8999999999999987 688999954 788999999
Q ss_pred HHHHHHHHhc--cHHHHHHHHHHHHH
Q 023425 245 EQFEVAAQAG--CNLGLRWLQRIEEE 268 (282)
Q Consensus 245 ~~~~~Aa~~g--~~~a~~~l~~l~~~ 268 (282)
..|.+|+... ..+|..+|+.+.+.
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKD 468 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhc
Confidence 9999999988 56678889988874
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=9.4e-21 Score=172.38 Aligned_cols=251 Identities=16% Similarity=0.052 Sum_probs=200.5
Q ss_pred hhhhhhhhHHhhhhhhh------cchhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 023425 4 QISKASTLKSAALGLLQ------SNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFEL 77 (282)
Q Consensus 4 ~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 77 (282)
.++.|-+.++.++.+-. +..+.--.-.|+..+|-+.|.+++.....+ .+.--+.|..+...+++-.|+.+|++
T Consensus 165 ~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f-AiawsnLg~~f~~~Gei~~aiq~y~e 243 (966)
T KOG4626|consen 165 DLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF-AIAWSNLGCVFNAQGEIWLAIQHYEE 243 (966)
T ss_pred CCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce-eeeehhcchHHhhcchHHHHHHHHHH
Confidence 34445555555554332 222222222678889999999988755422 22222333344456789999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 78 ALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 78 a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
|+.++|..++|+++||.+|... ..++.|+..|.+|+. +.++.++.|||.+|.+.+.. +.|+..|++|++.
T Consensus 244 AvkldP~f~dAYiNLGnV~ke~----~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~l----dlAI~~Ykral~~ 315 (966)
T KOG4626|consen 244 AVKLDPNFLDAYINLGNVYKEA----RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLL----DLAIDTYKRALEL 315 (966)
T ss_pred hhcCCCcchHHHhhHHHHHHHH----hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccH----HHHHHHHHHHHhc
Confidence 9999999999999999999976 455999999999984 57999999999999996666 9999999999998
Q ss_pred --CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-----
Q 023425 156 --LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----- 226 (282)
Q Consensus 156 --g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----- 226 (282)
+.++|+.+||..+.+ .++..+|..+|.+|+.. .++++++|||.+|.+ ...++.|...|++|.+
T Consensus 316 ~P~F~~Ay~NlanALkd----~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~al~v~p~~ 387 (966)
T KOG4626|consen 316 QPNFPDAYNNLANALKD----KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLKALEVFPEF 387 (966)
T ss_pred CCCchHHHhHHHHHHHh----ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHHHHHHHHHhhChhh
Confidence 799999999999999 89999999999999886 689999999999998 8889999999999987
Q ss_pred -HHchhchhc--cCCCHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHhh
Q 023425 227 -KARANLESN--LMNPVEKAKEQFEVAAQAGC--NLGLRWLQRIEEEEKR 271 (282)
Q Consensus 227 -~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g~--~~a~~~l~~l~~~~~~ 271 (282)
.++.||+.+ .++++++|+.+|+.|++... ..|..+++...++..+
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 689999966 67799999999999999874 4556666666665543
No 7
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=99.81 E-value=1.1e-18 Score=137.32 Aligned_cols=163 Identities=20% Similarity=0.161 Sum_probs=147.6
Q ss_pred CchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC-CCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCC---C
Q 023425 63 RLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKY-HVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVEND---Y 138 (282)
Q Consensus 63 ~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~-~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~---~ 138 (282)
++.+||++|.+.|++-++ +.++|.++|.+|..+..| ++...+...|++.|+.|++.+.+.|+.++|.+...|.. .
T Consensus 46 gi~knF~~A~kv~K~nCd-en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 46 GIQKNFQAAVKVFKKNCD-ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHHHhccc-ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccC
Confidence 446789999999999996 679999999999998877 56778999999999999999999999999999988753 3
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC----------C----------CccCHHHHHHHHHHHHHcCCHHHHH
Q 023425 139 VQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGD----------C----------VKKDIASALWCFHRASEKGHAGAAI 198 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~----------g----------~~~d~~~A~~~~~~A~~~g~~~a~~ 198 (282)
..|..+|..|+.+|++.++..|++.|+.+|..|. | +.+|.++|+++-.+|++.+++.|+-
T Consensus 125 dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCA 204 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACA 204 (248)
T ss_pred CCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHh
Confidence 4568999999999999999999999999999882 2 3489999999999999999999999
Q ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 199 AYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 199 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
|++.||..|.||++|.++|..|-.+|.+
T Consensus 205 N~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 205 NVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred hHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 9999999999999999999998888865
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.70 E-value=7.5e-15 Score=141.54 Aligned_cols=222 Identities=17% Similarity=0.089 Sum_probs=175.7
Q ss_pred cchHHHHHHHHHHhhhh--hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 31 SRNKKAMELIAKGWSAL--KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
+++++|++.|.+++... ........+..+..+...+++++|+.+|+++++.+|+++.+++.+|.++... .++++
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~----g~~~e 383 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLEL----GDPDK 383 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC----CCHHH
Confidence 57889999998887632 2333344455555555668899999999999999999999999999999865 57799
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
|+..|+++++ +.++++++.+|.++.. ..++++|+.+|+++.+. .++.++..||.++.. .+++++|+..
T Consensus 384 A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~ 455 (615)
T TIGR00990 384 AEEDFDKALKLNSEDPDIYYHRAQLHFI----KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK----EGSIASSMAT 455 (615)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH----CCCHHHHHHH
Confidence 9999999975 5689999999999988 44559999999999987 678899999999998 8999999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH------chhc------h-hc--cCCCHHHHHHHH
Q 023425 185 FHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA------RANL------E-SN--LMNPVEKAKEQF 247 (282)
Q Consensus 185 ~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a------~~~l------g-~~--~~~~~~~A~~~~ 247 (282)
|++++.. .++.+++.+|.++.. .+++++|+..|++|.... +.++ + .. ..+++++|+.+|
T Consensus 456 ~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 456 FRRCKKNFPEAPDVYNYYGELLLD----QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999875 568899999999998 788999999999998721 1111 1 11 257888999999
Q ss_pred HHHHHhc--cHHHHHHHHHHHHH
Q 023425 248 EVAAQAG--CNLGLRWLQRIEEE 268 (282)
Q Consensus 248 ~~Aa~~g--~~~a~~~l~~l~~~ 268 (282)
++|++.. +..+...++.+...
T Consensus 532 ~kAl~l~p~~~~a~~~la~~~~~ 554 (615)
T TIGR00990 532 EKALIIDPECDIAVATMAQLLLQ 554 (615)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHH
Confidence 9988776 34455556665554
No 9
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=99.69 E-value=1.8e-15 Score=119.30 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=110.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhcCC-CCcCCHHHHHHHHHHHHHcCCHH
Q 023425 82 DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN-MGDPDAQYELGCRLRVEN-DYVQSDQQAFYYIEKAVDQLHPG 159 (282)
Q Consensus 82 ~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~~g~-~~~~d~~~A~~~~~kAa~~g~~~ 159 (282)
....|++++.||..+. ++.+++++|.+.|++-++ .+++.++|.+|+.++.|. +...+++.|+++|+.|++.+.+.
T Consensus 30 ~EK~Pe~C~lLgdYlE---gi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~ 106 (248)
T KOG4014|consen 30 EEKRPESCQLLGDYLE---GIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQ 106 (248)
T ss_pred ccCCchHHHHHHHHHH---HHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHH
Confidence 4468999999999876 356899999999999995 589999999999998886 45678999999999999999999
Q ss_pred HHHHHHHHHhcCC---CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 023425 160 ALYLLGTVYLTGD---CVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRG 207 (282)
Q Consensus 160 A~~~Lg~~y~~g~---g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g 207 (282)
|+..+|.+..+|. ...-|.++|+.|+.+|++.++.+|+++|+-+|+.|
T Consensus 107 aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g 157 (248)
T KOG4014|consen 107 ACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGG 157 (248)
T ss_pred HHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhcc
Confidence 9999999999985 34555999999999999999999999999999987
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.66 E-value=2e-14 Score=138.59 Aligned_cols=211 Identities=17% Similarity=0.103 Sum_probs=169.0
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++.+.+++...+.. ...++..+......+++++|+..|+++++.+|.++.+++.+|.++... .++++
T Consensus 343 ~~g~~~eA~~~~~kal~l~P~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~ 417 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELDPRV-TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK----GEFAQ 417 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHH
Confidence 3788999999999998744432 233333444444457899999999999999999999999999999865 67899
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
|+.+|+++++ +++..++++||.++...+ ++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+..
T Consensus 418 A~~~~~kal~l~P~~~~~~~~la~~~~~~g----~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~ 489 (615)
T TIGR00990 418 AGKDYQKSIDLDPDFIFSHIQLGVTQYKEG----SIASSMATFRRCKKNFPEAPDVYNYYGELLLD----QNKFDEAIEK 489 (615)
T ss_pred HHHHHHHHHHcCccCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHH
Confidence 9999999985 568999999999999844 459999999999886 689999999999999 8999999999
Q ss_pred HHHHHHcCC--HH------HHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHH
Q 023425 185 FHRASEKGH--AG------AAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFE 248 (282)
Q Consensus 185 ~~~A~~~g~--~~------a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~ 248 (282)
|++|++... .. ...+.+..++. ..+++++|..++++++. .++..+|. ...+++++|+.+|+
T Consensus 490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~---~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 490 FDTAIELEKETKPMYMNVLPLINKALALFQ---WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHhcCCccccccccHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999988632 11 22232333322 15799999999999986 35667774 47889999999999
Q ss_pred HHHHhcc
Q 023425 249 VAAQAGC 255 (282)
Q Consensus 249 ~Aa~~g~ 255 (282)
+|++...
T Consensus 567 ~A~~l~~ 573 (615)
T TIGR00990 567 RAAELAR 573 (615)
T ss_pred HHHHHhc
Confidence 9998764
No 11
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.2e-14 Score=127.37 Aligned_cols=193 Identities=19% Similarity=0.192 Sum_probs=161.2
Q ss_pred hcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC
Q 023425 59 LNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVEN 136 (282)
Q Consensus 59 ~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~ 136 (282)
++.+...++.++|+.+|++|+.++|+...+|..+|.=|..- ++...|+..|++|++. -|-.|+|.||..|.-
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEm----KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-- 410 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEM----KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-- 410 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHh----cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH--
Confidence 34455568899999999999999999999999999998866 5669999999999965 578899999999988
Q ss_pred CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHcCCCCcc
Q 023425 137 DYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHA--GAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~--~a~~~Lg~~y~~g~g~~~ 212 (282)
.+-+--|+.||++|... +++.-+..||.||.. ..+.++|+++|.+|+.-|+. .+++.||.+|.+ .+
T Consensus 411 --m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAiKCykrai~~~dte~~~l~~LakLye~----l~ 480 (559)
T KOG1155|consen 411 --MKMHFYALYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE----LK 480 (559)
T ss_pred --hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHHHHHHHHHhccccchHHHHHHHHHHHH----HH
Confidence 44448999999999987 899999999999998 99999999999999999987 899999999999 89
Q ss_pred cHHHHHHHHHHHHHHH-------------chhch--hccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHH
Q 023425 213 CLTKLNAKRVSAAKKA-------------RANLE--SNLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEE 267 (282)
Q Consensus 213 ~~~~A~~~~~~a~~~a-------------~~~lg--~~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~ 267 (282)
+.++|..+|++-++.. ..-|. ....+|+++|..|..++...+ -++|...+..|..
T Consensus 481 d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRK 552 (559)
T ss_pred hHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 9999999999998732 22233 236678999998888887764 2334444444443
No 12
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.58 E-value=4.1e-13 Score=118.06 Aligned_cols=223 Identities=12% Similarity=-0.010 Sum_probs=157.7
Q ss_pred cchHHHHHHHHHHhhhh---hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHH
Q 023425 31 SRNKKAMELIAKGWSAL---KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~ 107 (282)
...+.++.-+.+.+... .......++..|..+...++.++|+..|+++++.+|+++.+++.+|.++... .+++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~----g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQA----GNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC----CCHH
Confidence 34577888888877522 2333455666666666678899999999999999999999999999999966 6789
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCccCHHHHHHH
Q 023425 108 MGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGT-VYLTGDCVKKDIASALWC 184 (282)
Q Consensus 108 ~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~-~y~~g~g~~~d~~~A~~~ 184 (282)
+|+..|.++++ ++++.+++++|.++...++. ++|+..|+++.+.........+.. +... .+++++|+..
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~----~eA~~~~~~al~~~P~~~~~~~~~~l~~~----~~~~~~A~~~ 187 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRY----ELAQDDLLAFYQDDPNDPYRALWLYLAES----KLDPKQAKEN 187 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHc----cCCHHHHHHH
Confidence 99999999975 67899999999999985555 999999999999843222222222 2233 5789999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHH----HHHH------HHchhchh--ccCCCHHHHHHHHHHHHH
Q 023425 185 FHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRV----SAAK------KARANLES--NLMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 185 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~----~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~ 252 (282)
|.+++...++..+. .+..+..-... +...++..+. .+.+ .+++++|. ...+++++|+.+|++|.+
T Consensus 188 l~~~~~~~~~~~~~-~~~~~~~lg~~--~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 188 LKQRYEKLDKEQWG-WNIVEFYLGKI--SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHHhhCCccccH-HHHHHHHccCC--CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 98888765554433 23333221111 1122332222 2222 58999994 488899999999999999
Q ss_pred hcc-HHHHHHHHHHHHH
Q 023425 253 AGC-NLGLRWLQRIEEE 268 (282)
Q Consensus 253 ~g~-~~a~~~l~~l~~~ 268 (282)
... ....+.++.++..
T Consensus 265 ~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 265 NNVYNFVEHRYALLELA 281 (296)
T ss_pred hCCchHHHHHHHHHHHH
Confidence 884 4455555544443
No 13
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.5e-13 Score=122.15 Aligned_cols=197 Identities=15% Similarity=0.068 Sum_probs=159.9
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+..++|+.+|..++...+.. ...--..|..+-..+|...|+..|++|++.+|-|-.|||.||.+|.-- .-..=|
T Consensus 343 r~eHEKAv~YFkRALkLNp~~-~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim----~Mh~Ya 417 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKLNPKY-LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM----KMHFYA 417 (559)
T ss_pred HHhHHHHHHHHHHHHhcCcch-hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh----cchHHH
Confidence 567899999999999844433 333334455556678999999999999999999999999999999965 445889
Q ss_pred HHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 110 AALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHP--GALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 110 ~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~--~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
+.+|++|. ++.|+.-+..||.+|..-+.. ++|+++|++|+..|++ .+++.||.+|.+ .+|.++|..+|
T Consensus 418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~----~eAiKCykrai~~~dte~~~l~~LakLye~----l~d~~eAa~~y 489 (559)
T KOG1155|consen 418 LYYFQKALELKPNDSRLWVALGECYEKLNRL----EEAIKCYKRAILLGDTEGSALVRLAKLYEE----LKDLNEAAQYY 489 (559)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHhccH----HHHHHHHHHHHhccccchHHHHHHHHHHHH----HHhHHHHHHHH
Confidence 99999997 678999999999999985555 9999999999999887 999999999999 99999999999
Q ss_pred HHHHHc-------C--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHH
Q 023425 186 HRASEK-------G--HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 186 ~~A~~~-------g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~ 252 (282)
.+-++- + ...|..-|+..+.. .+|+++|-.|..++..- ....++|...++.-..
T Consensus 490 ek~v~~~~~eg~~~~~t~ka~~fLA~~f~k----~~~~~~As~Ya~~~~~~---------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 490 EKYVEVSELEGEIDDETIKARLFLAEYFKK----MKDFDEASYYATLVLKG---------ETECEEAKALLREIRK 552 (559)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHh----hcchHHHHHHHHHHhcC---------CchHHHHHHHHHHHHH
Confidence 998772 2 25678889999988 88999888877665321 2234566666655443
No 14
>PRK12370 invasion protein regulator; Provisional
Probab=99.53 E-value=2e-12 Score=123.15 Aligned_cols=178 Identities=11% Similarity=-0.003 Sum_probs=140.7
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCC-----CCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCC
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYH-----VPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVEN 136 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~-----~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~ 136 (282)
...++++|+..|++|++.+|+++.++..||.+|.... ....+.++|+..+++|++ ++++.++..+|.++...
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~- 351 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH- 351 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-
Confidence 3467899999999999999999999999998765221 133557899999999984 67899999999998874
Q ss_pred CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcc
Q 023425 137 DYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~ 212 (282)
.++++|+.+|++|.+. +++.+++.+|.++.. .+++++|+.++++|++.. ++.+.+.++.++.. .+
T Consensus 352 ---g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~----~g 420 (553)
T PRK12370 352 ---SEYIVGSLLFKQANLLSPISADIKYYYGWNLFM----AGQLEEALQTINECLKLDPTRAAAGITKLWITYY----HT 420 (553)
T ss_pred ---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----cc
Confidence 4459999999999887 688999999999998 899999999999998864 45555555554444 46
Q ss_pred cHHHHHHHHHHHHHH-------Hchhchh--ccCCCHHHHHHHHHHHHHh
Q 023425 213 CLTKLNAKRVSAAKK-------ARANLES--NLMNPVEKAKEQFEVAAQA 253 (282)
Q Consensus 213 ~~~~A~~~~~~a~~~-------a~~~lg~--~~~~~~~~A~~~~~~Aa~~ 253 (282)
++++|+.+++++... ++.++|. ...+++++|..++.+....
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 788999999988652 4556773 3688999999999886543
No 15
>PRK12370 invasion protein regulator; Provisional
Probab=99.53 E-value=2.9e-12 Score=122.02 Aligned_cols=181 Identities=13% Similarity=-0.007 Sum_probs=144.0
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHH------HHHHhhc--CCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRV------IDYCELN--DRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV 101 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~ 101 (282)
.+..++|++.+.+++...+..... .+...+. .....+++++|+..+++|++.+|+++.++..+|.++...
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~-- 351 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH-- 351 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--
Confidence 455789999999988755433211 1111111 122456789999999999999999999999999998855
Q ss_pred CCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccC
Q 023425 102 PGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKD 177 (282)
Q Consensus 102 ~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d 177 (282)
.++++|+..|++|+ .++++.+++.+|.++...+.. ++|+.+|+++.+. .++.+.+.++.+++. .++
T Consensus 352 --g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~----~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~----~g~ 421 (553)
T PRK12370 352 --SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQL----EEALQTINECLKLDPTRAAAGITKLWITYY----HTG 421 (553)
T ss_pred --cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHhcCCCChhhHHHHHHHHHh----ccC
Confidence 57799999999997 467899999999999985554 9999999999998 456666666666665 678
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 178 IASALWCFHRASEK---GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 178 ~~~A~~~~~~A~~~---g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+++|+.++++++.. +++.++.++|.+|.. .+++++|..++++...
T Consensus 422 ~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~----~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 422 IDDAIRLGDELRSQHLQDNPILLSMQVMFLSL----KGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHHHHHHHHHhccccCHHHHHHHHHHHHh----CCCHHHHHHHHHHhhh
Confidence 99999999999864 568889999999987 8999999999988765
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.52 E-value=4.2e-12 Score=130.42 Aligned_cols=227 Identities=13% Similarity=0.027 Sum_probs=162.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHH-------------HHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDR-------------VIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLH 96 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~ 96 (282)
.+++++|++.|.+++...+.... ......+......+++++|+..|+++++.+|+++.+++.||.++
T Consensus 316 ~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~ 395 (1157)
T PRK11447 316 QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVA 395 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 67889999999888764442211 01112222333457799999999999999999999999999999
Q ss_pred hcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCC-------------------------------------
Q 023425 97 LKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVEND------------------------------------- 137 (282)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~------------------------------------- 137 (282)
... .++++|+.+|+++++ ++++.++..|+.+|..+..
T Consensus 396 ~~~----g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 396 MAR----KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHC----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 866 577999999999985 6788888888877643210
Q ss_pred -CcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcc
Q 023425 138 -YVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 138 -~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~ 212 (282)
...++++|+.+|+++++. +++.+++.||.+|.. .+++++|+..|+++++. +++.+.+.++.++.. .+
T Consensus 472 ~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~----~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~----~~ 543 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ----AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG----SD 543 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----CC
Confidence 135668899999999887 678899999999998 89999999999998764 578888888877665 45
Q ss_pred cHHHHHHHHHHHHH----------------------------------------------HHchhchh--ccCCCHHHHH
Q 023425 213 CLTKLNAKRVSAAK----------------------------------------------KARANLES--NLMNPVEKAK 244 (282)
Q Consensus 213 ~~~~A~~~~~~a~~----------------------------------------------~a~~~lg~--~~~~~~~~A~ 244 (282)
+.++|+.++++... ..+..+|. ...+++++|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 55556555543210 12233442 3567888888
Q ss_pred HHHHHHHHhc--cHHHHHHHHHHHHH
Q 023425 245 EQFEVAAQAG--CNLGLRWLQRIEEE 268 (282)
Q Consensus 245 ~~~~~Aa~~g--~~~a~~~l~~l~~~ 268 (282)
..|+++.+.. ++.+...++.+...
T Consensus 624 ~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 624 AAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888755 55666666666543
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.52 E-value=1.2e-11 Score=120.03 Aligned_cols=157 Identities=13% Similarity=-0.006 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHH
Q 023425 105 CKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIAS 180 (282)
Q Consensus 105 ~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~ 180 (282)
++++|+..|+++++ ++++.++++||.+|...+.......+|+.+|+++++. +++.++..+|.++.. .+++++
T Consensus 227 ~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~e 302 (656)
T PRK15174 227 KYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR----TGQNEK 302 (656)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHH
Confidence 44556666666653 4567777777777776555422223578888888776 677788888888877 778888
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------Hchhch--hccCCCHHHHHHHHHHH
Q 023425 181 ALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------ARANLE--SNLMNPVEKAKEQFEVA 250 (282)
Q Consensus 181 A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------a~~~lg--~~~~~~~~~A~~~~~~A 250 (282)
|+.+++++++. .++.+..++|.+|.. .++++.|+..|+++... ....+| ....+++++|+.+|+++
T Consensus 303 A~~~l~~al~l~P~~~~a~~~La~~l~~----~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 303 AIPLLQQSLATHPDLPYVRAMYARALRQ----VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888887664 457778888888877 67788888888877752 222234 34677888888888888
Q ss_pred HHhc-------cHHHHHHHHHHHHHH
Q 023425 251 AQAG-------CNLGLRWLQRIEEEE 269 (282)
Q Consensus 251 a~~g-------~~~a~~~l~~l~~~~ 269 (282)
++.. ...+...+....+..
T Consensus 379 l~~~P~~~~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 379 IQARASHLPQSFEEGLLALDGQISAV 404 (656)
T ss_pred HHhChhhchhhHHHHHHHHHHHHHhc
Confidence 7764 333444454444433
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.52 E-value=1e-11 Score=120.46 Aligned_cols=211 Identities=14% Similarity=-0.026 Sum_probs=111.4
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.+.+.+...+.. ....+..+......+++++|+..|+++++.+|+++.++..+|.++... .+.++|
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~-~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~----g~~~eA 163 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQ-PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLM----DKELQA 163 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----CChHHH
Confidence 566777777777766533322 223333334444456677777777777777777777777777776654 344666
Q ss_pred HHHHHHHH--hCCCHHHHHHHHHHHhcCCCC-------------------------------cCCHHHHHHHHHHHHHc-
Q 023425 110 AALLVDAA--NMGDPDAQYELGCRLRVENDY-------------------------------VQSDQQAFYYIEKAVDQ- 155 (282)
Q Consensus 110 ~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~-------------------------------~~d~~~A~~~~~kAa~~- 155 (282)
+..+++++ .++++.++..++. +...+.. ..++++|+..|.++++.
T Consensus 164 ~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 164 ISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66666554 2345555544433 2221111 12234445555554443
Q ss_pred -CCHHHHHHHHHHHhcCCCCccCHHH----HHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--
Q 023425 156 -LHPGALYLLGTVYLTGDCVKKDIAS----ALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK-- 226 (282)
Q Consensus 156 -g~~~A~~~Lg~~y~~g~g~~~d~~~----A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-- 226 (282)
+++.+++.||.+|.. .+++++ |+.+|+++++. +++.+...+|.++.. .+++++|+.+++++..
T Consensus 243 p~~~~~~~~Lg~~l~~----~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~l~~al~l~ 314 (656)
T PRK15174 243 LDGAALRRSLGLAYYQ----SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR----TGQNEKAIPLLQQSLATH 314 (656)
T ss_pred CCCHHHHHHHHHHHHH----cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence 345555555555554 344442 45555555443 345555555555555 4555555555555554
Q ss_pred ----HHchhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 227 ----KARANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 227 ----~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
.++.++|. ...+++++|+..|+++.+..
T Consensus 315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 315 PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23334442 24455556666665555544
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.50 E-value=9.6e-12 Score=123.18 Aligned_cols=194 Identities=18% Similarity=0.070 Sum_probs=137.9
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhc
Q 023425 57 CELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRV 134 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~ 134 (282)
..+......+++++|+.+|+++++.+|+++.+++.++.++... .+.++|+.+|+++++ +.+..++..++.++..
T Consensus 470 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE----GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3334444456788888888888888888888888888887754 456888888888764 4577788888888776
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC
Q 023425 135 ENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQV 210 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~ 210 (282)
.+ +.++|+.+|.++... ++....+.++.+|.. .+++++|+.+++++.+. .++.+++.+|.+|..
T Consensus 546 ~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 613 (899)
T TIGR02917 546 TG----NEEEAVAWLEKAAELNPQEIEPALALAQYYLG----KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA---- 613 (899)
T ss_pred cC----CHHHHHHHHHHHHHhCccchhHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----
Confidence 33 447888888887665 456777777777777 77888888888887654 457778888888877
Q ss_pred cccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHH
Q 023425 211 PECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIE 266 (282)
Q Consensus 211 ~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~ 266 (282)
.+++++|+.+|+++.+ .++..+|. ...+++++|+.+|+++.+.. +..+...+..+.
T Consensus 614 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 6778888888888776 24555553 35678888888888887765 334444444443
No 20
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.49 E-value=2e-11 Score=120.96 Aligned_cols=173 Identities=18% Similarity=0.138 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|.++.+++.+|.++... +++++|+.+|+++.+ +.++.++..++.++...+. ++
T Consensus 615 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~ 686 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVM----KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR----TE 686 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----HH
Confidence 4455555555555555555555555555555433 334555555555442 2344444444444443222 24
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcccHHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG-HAGAAIAYGSLLLRGVQVPECLTKLNAK 220 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 220 (282)
+|+.++++..+. .++..+..+|.+|.. .+++++|+.+|+++.... +....+.++.++.. .+++++|...
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 758 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLR----QKDYPAAIQAYRKALKRAPSSQNAIKLHRALLA----SGNTAEAVKT 758 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHH----CCCHHHHHHH
Confidence 444444443332 234444445555554 555556666665555432 22444455555544 4445555555
Q ss_pred HHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 221 RVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 221 ~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
+++... ..++.+|. ...+++++|..+|+++.+..
T Consensus 759 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 555443 23334442 24556666666666666554
No 21
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.49 E-value=8.7e-12 Score=128.13 Aligned_cols=148 Identities=19% Similarity=0.072 Sum_probs=107.5
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC-------
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV------- 101 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~------- 101 (282)
..+++++|++.|.+++...+. .....+..+......+++++|+.+|+++++.+|+++.++..|+.+|.....
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 467899999999998875443 233444555555566889999999999999999999999888887643210
Q ss_pred -------------------------------CCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHH
Q 023425 102 -------------------------------PGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYY 148 (282)
Q Consensus 102 -------------------------------~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~ 148 (282)
...++++|+.+|+++++ ++++.+++.||.+|...+ ++++|+..
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G----~~~~A~~~ 517 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG----QRSQADAL 517 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHH
Confidence 13567899999999874 678999999999998844 45999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 149 IEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 149 ~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
|+++++. +++.+.+.++.++.. .++.++|+.++
T Consensus 518 l~~al~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l 552 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAYGLYLSG----SDRDRAALAHL 552 (1157)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHh----CCCHHHHHHHH
Confidence 9998775 567777666655543 34444444443
No 22
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.3e-12 Score=120.58 Aligned_cols=220 Identities=17% Similarity=0.042 Sum_probs=160.9
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH--------------------------------
Q 023425 33 NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALE-------------------------------- 80 (282)
Q Consensus 33 ~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-------------------------------- 80 (282)
-.+|+..|.+-.+...+. +.+.-..|..+....++++|.++|+.+-.
T Consensus 335 ~~~A~~~~~klp~h~~nt-~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNT-GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 455666666522222222 24444555555556668888887777652
Q ss_pred --cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-
Q 023425 81 --ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ- 155 (282)
Q Consensus 81 --~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~- 155 (282)
.+|..|++|--+|++|... +|.+.|+++|++|+ ++++.-|+.-+|.=+.. ..++++|..+|++|+..
T Consensus 414 i~~~~~sPesWca~GNcfSLQ----kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~----~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQ----KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA----TEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhh----hHHHHHHHHHHHhhccCCccchhhhhcCChhhh----hHHHHhHHHHHHhhhcCC
Confidence 7888899999999998854 78899999999997 45678888888866555 34458999999999887
Q ss_pred -CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------
Q 023425 156 -LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH--AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------ 226 (282)
Q Consensus 156 -g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~--~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------ 226 (282)
.|-.|||.||.+|.. .+.++.|..+|++|++-.. .--...+|.++.. .+..++|+..|++|+.
T Consensus 486 ~rhYnAwYGlG~vy~K----qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLK----QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred chhhHHHHhhhhheec----cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCCCCc
Confidence 588999999999998 8889999999999988653 4446678888887 7888999999999987
Q ss_pred HHchhchhc--cCCCHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHH
Q 023425 227 KARANLESN--LMNPVEKAKEQFEVAAQAGC--NLGLRWLQRIEEEE 269 (282)
Q Consensus 227 ~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g~--~~a~~~l~~l~~~~ 269 (282)
...+..+.+ ...++++|+.-+++-.+.-. ....+.++++.+..
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 345555533 56678888888887777653 44566677777765
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.48 E-value=2.1e-11 Score=110.81 Aligned_cols=210 Identities=14% Similarity=-0.016 Sum_probs=149.5
Q ss_pred ccchHHHHHHHHHHhhhhhH---HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCH
Q 023425 30 HSRNKKAMELIAKGWSALKE---VDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACK 106 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~ 106 (282)
.+++++|++.+.+.+..... .........+..+...+++++|+.+|+++++.+|.+..++..|+.++... +++
T Consensus 82 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----g~~ 157 (389)
T PRK11788 82 RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQE----KDW 157 (389)
T ss_pred cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh----chH
Confidence 66788888877776653211 11122333333344456788888888888877777888888888888754 567
Q ss_pred HHHHHHHHHHHhCCC-------HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccC
Q 023425 107 AMGAALLVDAANMGD-------PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKD 177 (282)
Q Consensus 107 ~~A~~~~~~Aa~~g~-------~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d 177 (282)
++|+..|+++++.+. ...+..+|.++.. ..++++|+.+|+++.+. .++.+.+.+|.+|.. .++
T Consensus 158 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 229 (389)
T PRK11788 158 QKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----RGDLDAARALLKKALAADPQCVRASILLGDLALA----QGD 229 (389)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH----CCC
Confidence 888888888876431 2245567777777 44458899999888775 467788888888888 788
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH-----Hchhch--hccCCCHHHHHHHH
Q 023425 178 IASALWCFHRASEKGH---AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK-----ARANLE--SNLMNPVEKAKEQF 247 (282)
Q Consensus 178 ~~~A~~~~~~A~~~g~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----a~~~lg--~~~~~~~~~A~~~~ 247 (282)
+++|+.+|+++.+.+. +.++..++.+|.. .+++++|..+++++... ....++ ....+++++|+.+|
T Consensus 230 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 230 YAAAIEALERVEEQDPEYLSEVLPKLMECYQA----LGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999998887542 3456788888877 67888888888888762 223444 33677889999999
Q ss_pred HHHHHhcc
Q 023425 248 EVAAQAGC 255 (282)
Q Consensus 248 ~~Aa~~g~ 255 (282)
+++.+...
T Consensus 306 ~~~l~~~P 313 (389)
T PRK11788 306 REQLRRHP 313 (389)
T ss_pred HHHHHhCc
Confidence 98888753
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=1.6e-11 Score=102.15 Aligned_cols=146 Identities=19% Similarity=0.095 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|.++.++..+|.++... .++++|+.+|+++.+ +.++.+++++|.++.. ..+++
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----~g~~~ 116 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQL----GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ----QGKYE 116 (234)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cccHH
Confidence 4599999999999999999999999999999866 577999999999985 4678999999999988 44559
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHH
Q 023425 144 QAFYYIEKAVDQ----LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 144 ~A~~~~~kAa~~----g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
+|+.+|.++... ..+..+..+|.+|.. .+++++|..+|.+++.. +++.++..+|.++.. .+++++|
T Consensus 117 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A 188 (234)
T TIGR02521 117 QAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEKYLTRALQIDPQRPESLLELAELYYL----RGQYKDA 188 (234)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH----cCCHHHH
Confidence 999999999875 356788999999998 89999999999999875 468889999999998 8899999
Q ss_pred HHHHHHHHHH
Q 023425 218 NAKRVSAAKK 227 (282)
Q Consensus 218 ~~~~~~a~~~ 227 (282)
..+++++...
T Consensus 189 ~~~~~~~~~~ 198 (234)
T TIGR02521 189 RAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHh
Confidence 9999888764
No 25
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=2.1e-11 Score=101.40 Aligned_cols=177 Identities=12% Similarity=0.024 Sum_probs=143.2
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.+.+++...+. ........+......+++++|+.+|+++++..|.++.+++++|.++... .++++|
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----g~~~~A 118 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ----GKYEQA 118 (234)
T ss_pred CCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----ccHHHH
Confidence 67899999999998764432 2334444445555567899999999999999999999999999999865 578999
Q ss_pred HHHHHHHHhC----CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 023425 110 AALLVDAANM----GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 110 ~~~~~~Aa~~----g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
+.+|.++++. ..+..++++|.++... .++++|..+|.++... +++.++..+|.++.. .+++++|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~ 190 (234)
T TIGR02521 119 MQQFEQAIEDPLYPQPARSLENAGLCALKA----GDFDKAEKYLTRALQIDPQRPESLLELAELYYL----RGQYKDARA 190 (234)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH----cCCHHHHHH
Confidence 9999999863 4567899999999884 4559999999999986 578899999999999 899999999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 023425 184 CFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVS 223 (282)
Q Consensus 184 ~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 223 (282)
+++++.+. .++..+..++.++.. .++.+.|..+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~ 228 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARA----LGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHH
Confidence 99999775 456777777887776 6667666655543
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.44 E-value=2.4e-11 Score=110.50 Aligned_cols=222 Identities=16% Similarity=-0.003 Sum_probs=144.6
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHhcCCCCCc
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN----THARYWLSKLHLKYHVPGA 104 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~----~~a~~~Lg~~~~~~~~~~~ 104 (282)
..+++++|++.+.+.+...+. .....+..+......+++++|+..+++++...+.. ..+++.||.+|... .
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~----g 121 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA----G 121 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC----C
Confidence 456777788888777764332 23334444445555677888888888776532222 24567777777754 4
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHhcCCCCc
Q 023425 105 CKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLH-------PGALYLLGTVYLTGDCVK 175 (282)
Q Consensus 105 ~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~-------~~A~~~Lg~~y~~g~g~~ 175 (282)
++++|+.+|+++.+. .+..++..|+.++.. ..++++|+..|+++.+.+. ...+..+|.++.. .
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~ 193 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ----EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----R 193 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----C
Confidence 668888888887753 456777778877777 4445888888888776531 1234567777777 7
Q ss_pred cCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH-------Hchhch--hccCCCHHHHH
Q 023425 176 KDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK-------ARANLE--SNLMNPVEKAK 244 (282)
Q Consensus 176 ~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------a~~~lg--~~~~~~~~~A~ 244 (282)
+++++|+.+|+++++. .+..+.+.+|.+|.. .+++++|..+++++... .+..++ ....+++++|+
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALA----QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888887654 356777788888877 67788888888887752 223344 33667788888
Q ss_pred HHHHHHHHhccH-HHHHHHHHHHH
Q 023425 245 EQFEVAAQAGCN-LGLRWLQRIEE 267 (282)
Q Consensus 245 ~~~~~Aa~~g~~-~a~~~l~~l~~ 267 (282)
.+++++.+.... .....++.+..
T Consensus 270 ~~l~~~~~~~p~~~~~~~la~~~~ 293 (389)
T PRK11788 270 EFLRRALEEYPGADLLLALAQLLE 293 (389)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHH
Confidence 888887776522 22244444443
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.44 E-value=3.2e-11 Score=120.55 Aligned_cols=209 Identities=11% Similarity=0.019 Sum_probs=158.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.++..+|++.+.+.+...+.... .+..+......+++++|+.+|++++.. |.++.+++.+|.++... .+.++|
T Consensus 489 ~~~~~eAi~a~~~Al~~~Pd~~~--~L~lA~al~~~Gr~eeAi~~~rka~~~-~p~~~a~~~la~all~~----Gd~~eA 561 (987)
T PRK09782 489 DTLPGVALYAWLQAEQRQPDAWQ--HRAVAYQAYQVEDYATALAAWQKISLH-DMSNEDLLAAANTAQAA----GNGAAR 561 (987)
T ss_pred hCCcHHHHHHHHHHHHhCCchHH--HHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHC----CCHHHH
Confidence 46778899988877765554221 222222223457799999999998755 44456678888888765 577899
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 110 AALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 110 ~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
+.+|+++++. .+......++..... ..++++|+.+|+++++. -++.+++++|.++.. .+++++|+.+|+
T Consensus 562 ~~~l~qAL~l~P~~~~l~~~La~~l~~----~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~----lG~~deA~~~l~ 633 (987)
T PRK09782 562 DRWLQQAEQRGLGDNALYWWLHAQRYI----PGQPELALNDLTRSLNIAPSANAYVARATIYRQ----RHNVPAAVSDLR 633 (987)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHH
Confidence 9999999865 355555555554444 34559999999999986 248899999999998 899999999999
Q ss_pred HHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhccH
Q 023425 187 RASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 187 ~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g~~ 256 (282)
+++.. +++.++.++|.++.. .+++++|+..|+++++ .+++++|. ...+++++|+.+|++|++....
T Consensus 634 ~AL~l~Pd~~~a~~nLG~aL~~----~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 634 AALELEPNNSNYQAALGYALWD----SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99775 578899999999988 7889999999999987 47788884 4788999999999999887743
Q ss_pred H
Q 023425 257 L 257 (282)
Q Consensus 257 ~ 257 (282)
.
T Consensus 710 ~ 710 (987)
T PRK09782 710 Q 710 (987)
T ss_pred C
Confidence 3
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=7.8e-12 Score=115.60 Aligned_cols=185 Identities=17% Similarity=0.031 Sum_probs=158.3
Q ss_pred hcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCC
Q 023425 59 LNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVEN 136 (282)
Q Consensus 59 ~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~ 136 (282)
|+-+...++.+.|++.|++|+.+||+.+-|+..+|.=+... .++++|..+|++|+. +.+-.|||-||.+|...+
T Consensus 428 GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~----ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 428 GNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIAT----EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred cchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhh----HHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc
Confidence 33444568999999999999999999999999999877644 677999999999984 568999999999999966
Q ss_pred CCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcc
Q 023425 137 DYVQSDQQAFYYIEKAVDQL--HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~ 212 (282)
.. +.|.-+|++|++.+ +..-+..+|.++.. .++.++|+.+|++|+.. .++-+.|.-|.++.. ..
T Consensus 504 k~----e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~----~~ 571 (638)
T KOG1126|consen 504 KL----EFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS----LG 571 (638)
T ss_pred hh----hHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh----hc
Confidence 66 99999999999984 66677889999999 99999999999999776 578899999999998 78
Q ss_pred cHHHHHHHHHHHHH------HHchhchhc--cCCCHHHHHHHHHHHHHhccHHHH
Q 023425 213 CLTKLNAKRVSAAK------KARANLESN--LMNPVEKAKEQFEVAAQAGCNLGL 259 (282)
Q Consensus 213 ~~~~A~~~~~~a~~------~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g~~~a~ 259 (282)
++++|+.-++..-+ ..++-+|.+ ..++.+.|+..|.-|.++...-+.
T Consensus 572 ~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 572 RYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred chHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 89999888887655 477788855 667889999999999998876665
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.39 E-value=5.3e-11 Score=119.01 Aligned_cols=207 Identities=10% Similarity=-0.024 Sum_probs=159.5
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.+.+....-... ...+..+......+++++|+.+|+++++.+|.++.....++...... .++++|
T Consensus 522 ~Gr~eeAi~~~rka~~~~p~~--~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~----Gr~~eA 595 (987)
T PRK09782 522 VEDYATALAAWQKISLHDMSN--EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP----GQPELA 595 (987)
T ss_pred CCCHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC----CCHHHH
Confidence 678999999998865532221 11233333344457899999999999999888888777776655433 578999
Q ss_pred HHHHHHHHhCC-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 110 AALLVDAANMG-DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 110 ~~~~~~Aa~~g-~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
+.+|+++++.. ++++++++|.++...+.. ++|+.+|++++.. +++.++.+||.++.. .+++++|+..|+
T Consensus 596 l~~~~~AL~l~P~~~a~~~LA~~l~~lG~~----deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~----~G~~eeAi~~l~ 667 (987)
T PRK09782 596 LNDLTRSLNIAPSANAYVARATIYRQRHNV----PAAVSDLRAALELEPNNSNYQAALGYALWD----SGDIAQSREMLE 667 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHH
Confidence 99999998532 489999999999995554 9999999999988 789999999999999 899999999999
Q ss_pred HHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------Hchhchhc--cCCCHHHHHHHHHHHHHhc
Q 023425 187 RASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------ARANLESN--LMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 187 ~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------a~~~lg~~--~~~~~~~A~~~~~~Aa~~g 254 (282)
+|++. +++.+++++|.++.. .++++.|..+|+++++. .....|.+ ...++..|.+-|.++....
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~----lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQR----LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99875 689999999999998 89999999999999873 22233322 2234555555555555444
No 30
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=3.1e-11 Score=110.11 Aligned_cols=178 Identities=17% Similarity=0.075 Sum_probs=148.0
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCC----
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDY---- 138 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~---- 138 (282)
.+++.+|.-.|+.|+.-+|+|.+||-.||...... .+...|+.-++++.+ +++.+|+..||..|...+.-
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaEN----E~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAEN----ENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhc----cchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 47799999999999999999999999999998865 455889999999975 67999999999887431100
Q ss_pred ---------------------c---------C---CHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCccCHHHH
Q 023425 139 ---------------------V---------Q---SDQQAFYYIEKAVDQ----LHPGALYLLGTVYLTGDCVKKDIASA 181 (282)
Q Consensus 139 ---------------------~---------~---d~~~A~~~~~kAa~~----g~~~A~~~Lg~~y~~g~g~~~d~~~A 181 (282)
+ . ....-.++|..|+.+ -+++-+.-||.+|.. .+++++|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l----s~efdra 449 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL----SGEFDRA 449 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc----chHHHHH
Confidence 0 0 123455667777765 368999999999998 8999999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhch--hccCCCHHHHHHHHHHHH
Q 023425 182 LWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLE--SNLMNPVEKAKEQFEVAA 251 (282)
Q Consensus 182 ~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg--~~~~~~~~~A~~~~~~Aa 251 (282)
+.||+.|+.- .+..-+.+||..+.. ....++|+..|.+|.+ +++|||| .+-.+.|++|+.+|..|+
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN----~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLAN----GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcC----CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999875 578889999999999 4677899999999998 6999999 457889999999999999
Q ss_pred Hhc
Q 023425 252 QAG 254 (282)
Q Consensus 252 ~~g 254 (282)
.+-
T Consensus 526 ~mq 528 (579)
T KOG1125|consen 526 SMQ 528 (579)
T ss_pred Hhh
Confidence 865
No 31
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.35 E-value=1.2e-10 Score=95.64 Aligned_cols=145 Identities=19% Similarity=0.102 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+|+..|.+-+++|++.||.++.+|..++.+|... .+.+.|.+.|++|+. +++.+-++|.|-.+...+.. +
T Consensus 49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~----Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~----~ 120 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKL----GENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP----E 120 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc----CChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh----H
Confidence 4599999999999999999999999999999976 455999999999984 67999999999999886655 9
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHH
Q 023425 144 QAFYYIEKAVDQ----LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 144 ~A~~~~~kAa~~----g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
+|..+|.+|++. ..+..+-|+|.|-+. .+++++|.++|+++++. ..+.+...++..++. .+++..|
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~----~~~y~~A 192 (250)
T COG3063 121 EAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALELDPQFPPALLELARLHYK----AGDYAPA 192 (250)
T ss_pred HHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh----cccchHH
Confidence 999999999997 457889999999999 89999999999999886 568889999999998 8888888
Q ss_pred HHHHHHHHH
Q 023425 218 NAKRVSAAK 226 (282)
Q Consensus 218 ~~~~~~a~~ 226 (282)
..++++-..
T Consensus 193 r~~~~~~~~ 201 (250)
T COG3063 193 RLYLERYQQ 201 (250)
T ss_pred HHHHHHHHh
Confidence 888877644
No 32
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.2e-10 Score=106.02 Aligned_cols=187 Identities=18% Similarity=0.084 Sum_probs=158.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+.+++|.++|.||..+||..+.||..+|..+... .+.+.|+..|..|++. |.-.-...+|.-|.. ..+.+
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e----~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~----t~n~k 397 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGE----GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR----TNNLK 397 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhc----chHHHHHHHHHHHHHhccCCcchHHHHHHHHHH----hccHH
Confidence 3489999999999999999999999999999844 5679999999999974 877778889998887 55569
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----C-----CHHHHHHHHHHHHcCCCCcc
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----G-----HAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g-----~~~a~~~Lg~~y~~g~g~~~ 212 (282)
.|-++|..|... .+|--...+|.+.+. .+.+.+|..||+++... + ......|||..|.+ .+
T Consensus 398 LAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk----l~ 469 (611)
T KOG1173|consen 398 LAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK----LN 469 (611)
T ss_pred HHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH----Hh
Confidence 999999999876 789999999999988 78999999999999742 1 34558999999998 88
Q ss_pred cHHHHHHHHHHHHH------HHchhchhc--cCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Q 023425 213 CLTKLNAKRVSAAK------KARANLESN--LMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEE 268 (282)
Q Consensus 213 ~~~~A~~~~~~a~~------~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~ 268 (282)
.++.|+.+|+++.. ..+..+|.+ ..++++.|+.+|.+|.-.. +..+...|....+.
T Consensus 470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 89999999999987 577788855 8999999999999998876 44566666665554
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=3.3e-11 Score=108.06 Aligned_cols=216 Identities=16% Similarity=0.128 Sum_probs=174.4
Q ss_pred hhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCC
Q 023425 23 QHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVP 102 (282)
Q Consensus 23 ~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~ 102 (282)
.+....+.++.-.|.+.+.++|+...... ..++..+..+--..+.++-.+.|.+|..++|.+|+.+|+-|.|+...
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL--- 407 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL--- 407 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH---
Confidence 34556678888899998888887444322 22333333444456789999999999999999999999999999855
Q ss_pred CcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCH
Q 023425 103 GACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDI 178 (282)
Q Consensus 103 ~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~ 178 (282)
++++.|+.=|.+|+.. .++-++..|+...++...+ ++++..|+.+.+. ..++.+...|.++.+ .+++
T Consensus 408 -~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~----~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD----qqqF 478 (606)
T KOG0547|consen 408 -QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKI----AESMKTFEEAKKKFPNCPEVYNLFAEILTD----QQQF 478 (606)
T ss_pred -HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhCCCCchHHHHHHHHHhh----HHhH
Confidence 6789999999999854 5778888899887775555 9999999999987 889999999999999 9999
Q ss_pred HHHHHHHHHHHHcCC--------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchhc--cCCCHHH
Q 023425 179 ASALWCFHRASEKGH--------AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLESN--LMNPVEK 242 (282)
Q Consensus 179 ~~A~~~~~~A~~~g~--------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~~--~~~~~~~ 242 (282)
++|++.|.+|++.-. +..+.+-|.+..+ ..+|+..|...+++|++ .+.-.||.+ ..++.++
T Consensus 479 d~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q---wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~e 555 (606)
T KOG0547|consen 479 DKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ---WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDE 555 (606)
T ss_pred HHHHHHHHHHHhhccccccccccchhhhhhhHhhhc---hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHH
Confidence 999999999988643 4445555666655 36999999999999987 677788854 6678999
Q ss_pred HHHHHHHHHHhc
Q 023425 243 AKEQFEVAAQAG 254 (282)
Q Consensus 243 A~~~~~~Aa~~g 254 (282)
|+++|++|+.+-
T Consensus 556 AielFEksa~lA 567 (606)
T KOG0547|consen 556 AIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHH
Confidence 999999999866
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.33 E-value=2.7e-11 Score=105.59 Aligned_cols=230 Identities=19% Similarity=0.055 Sum_probs=93.7
Q ss_pred hcccchHHHHHHHHHHhhhh-hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCH
Q 023425 28 WLHSRNKKAMELIAKGWSAL-KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACK 106 (282)
Q Consensus 28 ~~~~~~~~A~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~ 106 (282)
...+++++|++.+.+++... ......+....+.-....+++++|+..|++.+..++.++..+..|+.++.. .++
T Consensus 19 ~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~-----~~~ 93 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQD-----GDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccc
Confidence 34678999999998877655 333333444444445566899999999999999999999999888888433 467
Q ss_pred HHHHHHHHHHHh-CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCccCHHHH
Q 023425 107 AMGAALLVDAAN-MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LHPGALYLLGTVYLTGDCVKKDIASA 181 (282)
Q Consensus 107 ~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~~~A~~~Lg~~y~~g~g~~~d~~~A 181 (282)
++|+..++++.+ .+++.....+..++.. ..+++++...+.++... .++..+..+|.++.. .++.++|
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A 165 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYR----LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ----LGDPDKA 165 (280)
T ss_dssp ------------------------H-HHH----TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----CCHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHH----HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCCHHHH
Confidence 889998888875 3567777677777777 45569999999987654 467888999999999 8999999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhch--hccCCCHHHHHHHHHHHH
Q 023425 182 LWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLE--SNLMNPVEKAKEQFEVAA 251 (282)
Q Consensus 182 ~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg--~~~~~~~~~A~~~~~~Aa 251 (282)
+.+|++|++. +++.+...++.++.. .++.+++...++.... ..+..+| ....+++++|+.||+++.
T Consensus 166 ~~~~~~al~~~P~~~~~~~~l~~~li~----~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 166 LRDYRKALELDPDDPDARNALAWLLID----MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHCT----TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 9999999885 568889999999987 6677765555544433 2334455 447789999999999999
Q ss_pred Hhc--cHHHHHHHHHHHHHHhhcCC
Q 023425 252 QAG--CNLGLRWLQRIEEEEKRLLT 274 (282)
Q Consensus 252 ~~g--~~~a~~~l~~l~~~~~~~~~ 274 (282)
+.. ++.....++.+.....+...
T Consensus 242 ~~~p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 242 KLNPDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp HHSTT-HHHHHHHHHHHT-------
T ss_pred ccccccccccccccccccccccccc
Confidence 954 77788888887776544433
No 35
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.32 E-value=7.3e-11 Score=103.79 Aligned_cols=180 Identities=12% Similarity=-0.085 Sum_probs=130.0
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.++.++|+..|.+++...+ .....++..+......+++++|+..|+++++.+|+++.+++++|.++... +++++|
T Consensus 77 ~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~----g~~~eA 151 (296)
T PRK11189 77 LGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG----GRYELA 151 (296)
T ss_pred CCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 5788999999999887443 34556666767777778999999999999999999999999999999866 577999
Q ss_pred HHHHHHHHhCCCHHHHHHHHH-HHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-CCCCccCHHHHHHHHHH
Q 023425 110 AALLVDAANMGDPDAQYELGC-RLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLT-GDCVKKDIASALWCFHR 187 (282)
Q Consensus 110 ~~~~~~Aa~~g~~~A~~~Lg~-~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~-g~g~~~d~~~A~~~~~~ 187 (282)
+..|+++++....+....+.. +... ..+.++|+..|.+++...+++.+. ++.++.. | ..+..+++..+.+
T Consensus 152 ~~~~~~al~~~P~~~~~~~~~~l~~~----~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg---~~~~~~~~~~~~~ 223 (296)
T PRK11189 152 QDDLLAFYQDDPNDPYRALWLYLAES----KLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLG---KISEETLMERLKA 223 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHc----cCCHHHHHHHHHHHHhhCCccccH-HHHHHHHcc---CCCHHHHHHHHHh
Confidence 999999986542222222222 2222 345699999998888765554443 3433332 1 1222344444443
Q ss_pred HH----H--cCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 188 AS----E--KGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 188 A~----~--~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+. + ...++++++||.+|.. .+++++|+.+|++|++
T Consensus 224 ~~~~~~~l~~~~~ea~~~Lg~~~~~----~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 224 GATDNTELAERLCETYFYLAKYYLS----LGDLDEAAALFKLALA 264 (296)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 32 2 2356899999999998 8999999999999976
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.32 E-value=5.1e-10 Score=107.47 Aligned_cols=232 Identities=16% Similarity=0.052 Sum_probs=156.6
Q ss_pred ccchHHHHHHHHHHhhhh--hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHhcCCCCCcCH
Q 023425 30 HSRNKKAMELIAKGWSAL--KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN-THARYWLSKLHLKYHVPGACK 106 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~-~~a~~~Lg~~~~~~~~~~~~~ 106 (282)
++++..++++...++..- .......+|..+..++..+|+++|..+|.+++..++++ .-+++.||.+|... .+.
T Consensus 283 K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~----~dl 358 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR----GDL 358 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh----chH
Confidence 677888887776665422 12334458888999999999999999999999988888 78889999999866 577
Q ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC---------
Q 023425 107 AMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDC--------- 173 (282)
Q Consensus 107 ~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g--------- 173 (282)
+.|+.+|++..+ +++.+.+..||.+|......+...++|..+..++.+. .+.+|+..|+.+|..+..
T Consensus 359 e~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~ 438 (1018)
T KOG2002|consen 359 EESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGN 438 (1018)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 999999999874 6888999999998876533333346677777777665 456666666666664210
Q ss_pred -------------------------CccCHHHHHHHHHHHHHc----CC--------HHHHHHHHHHHHcCCCCcccHHH
Q 023425 174 -------------------------VKKDIASALWCFHRASEK----GH--------AGAAIAYGSLLLRGVQVPECLTK 216 (282)
Q Consensus 174 -------------------------~~~d~~~A~~~~~~A~~~----g~--------~~a~~~Lg~~y~~g~g~~~~~~~ 216 (282)
..+++.+|...|..|... -+ ..-.|||+.+++. ..+.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~----l~~~~~ 514 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE----LHDTEV 514 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh----hhhhhH
Confidence 145555555555555332 01 1125556666555 455555
Q ss_pred HHHHHHHHHH------HHchhchhc--cCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Q 023425 217 LNAKRVSAAK------KARANLESN--LMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 217 A~~~~~~a~~------~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~ 269 (282)
|.+.|+.... .++..+|.+ ...+..+|..|+..+.+.. +|.+...++.++...
T Consensus 515 A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 515 AEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhh
Confidence 5555555554 234445533 3457788999999888755 788888888655433
No 37
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.32 E-value=2.1e-10 Score=109.98 Aligned_cols=222 Identities=16% Similarity=0.171 Sum_probs=172.0
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHH----HHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcC
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVI----DYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGAC 105 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~ 105 (282)
.++|..|+.+|.+++...+...... ++|... .++.+.|+..|++|++++|.+..++..||.+-..-... ..
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~k----l~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~-~s 251 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIGIGHCFWK----LGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDS-DS 251 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHh----ccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccch-HH
Confidence 7889999999999877555433322 333322 35688999999999999999999999999997755433 67
Q ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCccCH
Q 023425 106 KAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL-----HPGALYLLGTVYLTGDCVKKDI 178 (282)
Q Consensus 106 ~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~g~g~~~d~ 178 (282)
+..++..+.+|- .+.+|.+...|+..|+. .+|++.+..+..-++..- -.+++|++|.+|.. .+|+
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha----~Gd~ 323 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA----QGDF 323 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh----hccH
Confidence 899999999996 45699999999999888 666699998888887752 35678999999999 9999
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------HchhchhccC------CCHHHH
Q 023425 179 ASALWCFHRASEK---GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------ARANLESNLM------NPVEKA 243 (282)
Q Consensus 179 ~~A~~~~~~A~~~---g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------a~~~lg~~~~------~~~~~A 243 (282)
++|..||.+|... ++..+.+.||.+|.. ..+++.|...|++.... ...-||.+.. -..++|
T Consensus 324 ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~----~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 324 EKAFKYYMESLKADNDNFVLPLVGLGQMYIK----RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred HHHHHHHHHHHccCCCCccccccchhHHHHH----hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 9999999999664 347789999999998 89999999999998872 3334553311 135788
Q ss_pred HHHHHHHHHhc--cHHHHHHHHHHHHH
Q 023425 244 KEQFEVAAQAG--CNLGLRWLQRIEEE 268 (282)
Q Consensus 244 ~~~~~~Aa~~g--~~~a~~~l~~l~~~ 268 (282)
..+..++.+.- +..|+..++.+.+.
T Consensus 400 ~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 88888888766 55566666666653
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=3.6e-09 Score=94.55 Aligned_cols=150 Identities=16% Similarity=0.087 Sum_probs=76.3
Q ss_pred cCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH--HHhCCCHHHHHHHHHHHhcCCC
Q 023425 60 NDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVD--AANMGDPDAQYELGCRLRVEND 137 (282)
Q Consensus 60 ~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~--Aa~~g~~~A~~~Lg~~y~~g~~ 137 (282)
+.....+|+++|.+.|+.|+.-+....+|.|++|.-+... .+.++|+.+|.+ ++-.++.+-.+.++.+|..
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~----~~ldeald~f~klh~il~nn~evl~qianiye~--- 570 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEAL----GNLDEALDCFLKLHAILLNNAEVLVQIANIYEL--- 570 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHh----cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 3333345555555555555554445555555555555533 233555555554 2344555555555555554
Q ss_pred CcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCccc
Q 023425 138 YVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPEC 213 (282)
Q Consensus 138 ~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~ 213 (282)
.+|..+|++||.++... ++|..+..||.+|-. .+|..+|+.|+-.+-.. -+.+..-.||..|.. .+-
T Consensus 571 -led~aqaie~~~q~~slip~dp~ilskl~dlydq----egdksqafq~~ydsyryfp~nie~iewl~ayyid----tqf 641 (840)
T KOG2003|consen 571 -LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ----EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID----TQF 641 (840)
T ss_pred -hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc----ccchhhhhhhhhhcccccCcchHHHHHHHHHHHh----hHH
Confidence 44445555555555444 455555555555555 55555555554444332 234444445555554 444
Q ss_pred HHHHHHHHHHHH
Q 023425 214 LTKLNAKRVSAA 225 (282)
Q Consensus 214 ~~~A~~~~~~a~ 225 (282)
.++|+.||++|+
T Consensus 642 ~ekai~y~ekaa 653 (840)
T KOG2003|consen 642 SEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHHHHH
Confidence 455555555553
No 39
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.21 E-value=7e-10 Score=91.79 Aligned_cols=120 Identities=15% Similarity=0.059 Sum_probs=105.0
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHH-hcCCCCcCC
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRL-RVENDYVQS 141 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y-~~g~~~~~d 141 (282)
..+.++++..++++++.+|+++++|+.||.+|... .++++|+..|++|.+ +++++.+..+|.++ ...++. +
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~----g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~--~ 125 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWR----NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH--M 125 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC--C
Confidence 56689999999999999999999999999999866 677999999999985 67999999999864 453321 2
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCH
Q 023425 142 DQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHA 194 (282)
Q Consensus 142 ~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~ 194 (282)
.++|...+.++.+. +++.+++.||..++. .+++++|+.+|+++++...+
T Consensus 126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 126 TPQTREMIDKALALDANEVTALMLLASDAFM----QADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred cHHHHHHHHHHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Confidence 38999999999988 789999999999999 99999999999999887543
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.19 E-value=6.9e-09 Score=102.60 Aligned_cols=249 Identities=12% Similarity=-0.007 Sum_probs=132.2
Q ss_pred hhhhhhhHHhhhhhhhcchhhhhhc------ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHH
Q 023425 5 ISKASTLKSAALGLLQSNQHQKRWL------HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELA 78 (282)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 78 (282)
...|.+++..++.+-..+......+ .+++++|++.+.+.+...+.... .+..+......+++++|+..|+++
T Consensus 65 ~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~--~~~la~~l~~~g~~~~Al~~l~~a 142 (765)
T PRK10049 65 WQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN--LLALAYVYKRAGRHWDELRAMTQA 142 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555444433333222222 56677777777776654333222 333444444556677777777777
Q ss_pred HHcCCCCHHHHHHHHHHHhcCCCCCc---------------------------------------CH---HHHHHHHHHH
Q 023425 79 LEADNSNTHARYWLSKLHLKYHVPGA---------------------------------------CK---AMGAALLVDA 116 (282)
Q Consensus 79 ~~~~~g~~~a~~~Lg~~~~~~~~~~~---------------------------------------~~---~~A~~~~~~A 116 (282)
++..|+++.+++.++.++...+.... .+ ++|+..|++.
T Consensus 143 l~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 143 LPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 77777777777777776654322110 00 2334444444
Q ss_pred HhC--CCHH-------HHHH-HHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHH
Q 023425 117 ANM--GDPD-------AQYE-LGCRLRVENDYVQSDQQAFYYIEKAVDQL---HPGALYLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 117 a~~--g~~~-------A~~~-Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
++. .+|+ +... +|.++.. .+.++|+..|+++.+.+ ...+...+|.+|.. .+++++|+.
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~-----g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~----~g~~e~A~~ 293 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLAR-----DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK----LHQPEKAQS 293 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh----cCCcHHHHH
Confidence 321 1221 1111 3333322 23467777777766654 22345556777776 677777777
Q ss_pred HHHHHHHcCC------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH---------------------Hchhch--h
Q 023425 184 CFHRASEKGH------AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK---------------------ARANLE--S 234 (282)
Q Consensus 184 ~~~~A~~~g~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------------------a~~~lg--~ 234 (282)
+|+++++... ......|+..+.. .+++++|..+++++... ++..++ .
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~----~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLE----SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHh----cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 7777665431 2345556666655 66677777777666552 112222 2
Q ss_pred ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Q 023425 235 NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEE 268 (282)
Q Consensus 235 ~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~ 268 (282)
...+++++|+..+++++... ++.....++.+...
T Consensus 370 ~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 25566677777777666643 45555555555543
No 41
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.5e-09 Score=93.39 Aligned_cols=186 Identities=13% Similarity=0.092 Sum_probs=153.1
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHH
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~ 144 (282)
-+.+|.+.++.+++. ..+++.+..|+.+|..- .....|+..|....+ +++..-....+.++.. ..+.++
T Consensus 238 m~r~AekqlqssL~q-~~~~dTfllLskvY~ri----dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea----m~~~~~ 308 (478)
T KOG1129|consen 238 MPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQRI----DQPERALLVIGEGLDSFPFDVTYLLGQARIHEA----MEQQED 308 (478)
T ss_pred ChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHh----ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH----HHhHHH
Confidence 388999999999964 57899999999999866 455889999999886 4677777777888887 555599
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcccHHHHHHH
Q 023425 145 AFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPECLTKLNAK 220 (282)
Q Consensus 145 A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 220 (282)
|+++|+.+++. .+++|.--+|.-|+. .++++-|+.||++.++.| +++-+.|+|.|.+. -+.++.+...
T Consensus 309 a~~lYk~vlk~~~~nvEaiAcia~~yfY----~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y----aqQ~D~~L~s 380 (478)
T KOG1129|consen 309 ALQLYKLVLKLHPINVEAIACIAVGYFY----DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY----AQQIDLVLPS 380 (478)
T ss_pred HHHHHHHHHhcCCccceeeeeeeecccc----CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh----hcchhhhHHH
Confidence 99999999987 578888888888887 688999999999999987 68889999999988 5677778888
Q ss_pred HHHHHH---------HHchhchhc--cCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Q 023425 221 RVSAAK---------KARANLESN--LMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 221 ~~~a~~---------~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~ 269 (282)
|.+|.. ..|||||.+ .-+|+..|...|+.|.... +..|..+|+.+.-..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 888865 579999954 6789999999999998766 666778888877654
No 42
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=3.8e-10 Score=96.97 Aligned_cols=221 Identities=14% Similarity=0.037 Sum_probs=161.7
Q ss_pred hhhhhcchhhhhhc-ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 023425 16 LGLLQSNQHQKRWL-HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSK 94 (282)
Q Consensus 16 ~~~~~~~~~~~~~~-~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~ 94 (282)
+.--+.+|-.++.+ .+-+.+|...++..++...-.+ .+......+...+.++.|+..|...++.-|++..-....+.
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~d--TfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPD--TFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQAR 298 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchh--HHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHH
Confidence 34444555445544 5567777777777766443322 22222334455567888999999998888888777777777
Q ss_pred HHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhc
Q 023425 95 LHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL--HPGALYLLGTVYLT 170 (282)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~ 170 (282)
++..- .+.++|.++|+.+++. .+.+|...+|.-|+.++.. +-|+.||++...+| +|+-..|||.|.+.
T Consensus 299 i~eam----~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~P----E~AlryYRRiLqmG~~speLf~NigLCC~y 370 (478)
T KOG1129|consen 299 IHEAM----EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNP----EMALRYYRRILQMGAQSPELFCNIGLCCLY 370 (478)
T ss_pred HHHHH----HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCCh----HHHHHHHHHHHHhcCCChHHHhhHHHHHHh
Confidence 77754 4568899999998864 5778888888777775444 88999999998885 78888899988888
Q ss_pred CCCCccCHHHHHHHHHHHHHc---C--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchhc--cC
Q 023425 171 GDCVKKDIASALWCFHRASEK---G--HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLESN--LM 237 (282)
Q Consensus 171 g~g~~~d~~~A~~~~~~A~~~---g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~~--~~ 237 (282)
.+.++.++..|++|... . -++.+||||.+... .+|...|...|+.+.. .+..||+.. ..
T Consensus 371 ----aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~----iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 371 ----AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT----IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred ----hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe----ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 67788889999988653 1 25678899888776 7888888888888875 577788854 77
Q ss_pred CCHHHHHHHHHHHHHhc
Q 023425 238 NPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 238 ~~~~~A~~~~~~Aa~~g 254 (282)
+++++|+.++.-|...-
T Consensus 443 G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 443 GDILGARSLLNAAKSVM 459 (478)
T ss_pred CchHHHHHHHHHhhhhC
Confidence 88999998888776544
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.7e-09 Score=96.51 Aligned_cols=221 Identities=15% Similarity=0.037 Sum_probs=160.4
Q ss_pred hhhhhcccchHHHHHHHHHHhhhhhHH--HHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC
Q 023425 24 HQKRWLHSRNKKAMELIAKGWSALKEV--DRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV 101 (282)
Q Consensus 24 ~~~~~~~~~~~~A~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~ 101 (282)
...-...++++.|+|.+.---+..+.. ....-++.......-+++..|-.|-..|+..+.-++.|+.+-|.+-+-.
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~n-- 503 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFAN-- 503 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeec--
Confidence 334445778888888764322211111 1111112222222236799999999999999999999999998875533
Q ss_pred CCcCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHhcCCCCccC
Q 023425 102 PGACKAMGAALLVDAANMG--DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAV--DQLHPGALYLLGTVYLTGDCVKKD 177 (282)
Q Consensus 102 ~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa--~~g~~~A~~~Lg~~y~~g~g~~~d 177 (282)
.|+++|.++|+.|...+ ..+|.|++|..+...++. ++|+.+|.+.- -.++++.++.++.+|.. ..|
T Consensus 504 --gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~l----deald~f~klh~il~nn~evl~qianiye~----led 573 (840)
T KOG2003|consen 504 --GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNL----DEALDCFLKLHAILLNNAEVLVQIANIYEL----LED 573 (840)
T ss_pred --CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hhC
Confidence 58899999999999764 679999999999985555 99999999864 45999999999999999 999
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------Hchhch--hccCCCHHHHHHHH
Q 023425 178 IASALWCFHRASE--KGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------ARANLE--SNLMNPVEKAKEQF 247 (282)
Q Consensus 178 ~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------a~~~lg--~~~~~~~~~A~~~~ 247 (282)
..+|++|+-++.. ..+|...-.||.+|-+ .+|-..|+.++-..-.- .--.|| ++...-.++|+.||
T Consensus 574 ~aqaie~~~q~~slip~dp~ilskl~dlydq----egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPNDPAILSKLADLYDQ----EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHhhc----ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999866 4789999999999988 67777777665444321 111233 33555678899999
Q ss_pred HHHHHhccHHHHH
Q 023425 248 EVAAQAGCNLGLR 260 (282)
Q Consensus 248 ~~Aa~~g~~~a~~ 260 (282)
++|+-.....+..
T Consensus 650 ekaaliqp~~~kw 662 (840)
T KOG2003|consen 650 EKAALIQPNQSKW 662 (840)
T ss_pred HHHHhcCccHHHH
Confidence 9998776554443
No 44
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.16 E-value=2e-09 Score=84.53 Aligned_cols=119 Identities=13% Similarity=0.012 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHH
Q 023425 72 KENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYI 149 (282)
Q Consensus 72 ~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~ 149 (282)
..+|+++++.+|+ .++.+|..+... +++++|+..|++++. +.++++++++|.++...+. +++|+.+|
T Consensus 13 ~~~~~~al~~~p~---~~~~~g~~~~~~----g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~----~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSVDPE---TVYASGYASWQE----GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE----YTTAINFY 81 (144)
T ss_pred HHHHHHHHHcCHH---HHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh----HHHHHHHH
Confidence 3578888887544 466778887755 567888888888874 5688888889988888444 48899999
Q ss_pred HHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 023425 150 EKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLL 205 (282)
Q Consensus 150 ~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~ 205 (282)
.+++.. +++.+++++|.++.. .+++++|+..|++|+.. +++..+.+.|....
T Consensus 82 ~~Al~l~p~~~~a~~~lg~~l~~----~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 82 GHALMLDASHPEPVYQTGVCLKM----MGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 998886 788889999998888 88899999999988774 56777777776543
No 45
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.15 E-value=5.6e-09 Score=88.47 Aligned_cols=147 Identities=16% Similarity=0.033 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHH---HHHHHHHHHhcCCC
Q 023425 66 PLLKTAKENFELALEADNSNT---HARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPD---AQYELGCRLRVEND 137 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~---~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~---A~~~Lg~~y~~g~~ 137 (282)
+++++|+..|++++...|+++ .+++.+|.++... +++++|+..|+++++ ++++. +++.+|.++.....
T Consensus 47 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~ 122 (235)
T TIGR03302 47 GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS----GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID 122 (235)
T ss_pred CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc
Confidence 449999999999999988887 6889999999976 678999999999985 34444 79999999876311
Q ss_pred ----CcCCHHHHHHHHHHHHHc--CCHHH-----------------HHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--
Q 023425 138 ----YVQSDQQAFYYIEKAVDQ--LHPGA-----------------LYLLGTVYLTGDCVKKDIASALWCFHRASEKG-- 192 (282)
Q Consensus 138 ----~~~d~~~A~~~~~kAa~~--g~~~A-----------------~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-- 192 (282)
...+.++|+..|+++++. +++.+ ...+|.+|.. .+++.+|+.+|+++++..
T Consensus 123 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~ 198 (235)
T TIGR03302 123 RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK----RGAYVAAINRFETVVENYPD 198 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHCCC
Confidence 124578999999999876 33322 2367778887 899999999999998752
Q ss_pred ---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 023425 193 ---HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSA 224 (282)
Q Consensus 193 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 224 (282)
.+.+++.+|..|.. .+++++|..+++..
T Consensus 199 ~~~~~~a~~~l~~~~~~----lg~~~~A~~~~~~l 229 (235)
T TIGR03302 199 TPATEEALARLVEAYLK----LGLKDLAQDAAAVL 229 (235)
T ss_pred CcchHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence 36789999999988 77777777666544
No 46
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.10 E-value=1.9e-08 Score=99.56 Aligned_cols=131 Identities=5% Similarity=-0.090 Sum_probs=98.2
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.++.++|++.+.+... ..+.........+......+++++|+..|+++++.+|+++.+...++.++... .+.++|
T Consensus 28 ~g~~~~A~~~~~~~~~-~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~----g~~~eA 102 (765)
T PRK10049 28 AGQDAEVITVYNRYRV-HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA----GQYDEA 102 (765)
T ss_pred cCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 6678888887777654 22222222233333334456689999999999999999999999999888765 566899
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
+..++++++ ++++. ++.+|.++.. ..+.++|+..|+++++. +++.++..++.++..
T Consensus 103 ~~~l~~~l~~~P~~~~-~~~la~~l~~----~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 103 LVKAKQLVSGAPDKAN-LLALAYVYKR----AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999874 56788 8889998887 44459999999999887 788888888888876
No 47
>PLN02789 farnesyltranstransferase
Probab=99.09 E-value=4.9e-08 Score=86.48 Aligned_cols=214 Identities=10% Similarity=-0.084 Sum_probs=162.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
..++.+|++++...+... +..++|+..+.++++.+|.+..+++..|.++... ..+++++
T Consensus 33 ~~~~~~a~~~~ra~l~~~------------------e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L---~~~l~ee 91 (320)
T PLN02789 33 TPEFREAMDYFRAVYASD------------------ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEAL---DADLEEE 91 (320)
T ss_pred CHHHHHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHc---chhHHHH
Confidence 556888888777654311 2368999999999999999999999999998854 2357899
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
+.++.++++ +.+..+++..+.++..-+. ...++++.++.++++. .+..|+...|.++.. .++++++++++
T Consensus 92 L~~~~~~i~~npknyqaW~~R~~~l~~l~~--~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL~~~ 165 (320)
T PLN02789 92 LDFAEDVAEDNPKNYQIWHHRRWLAEKLGP--DAANKELEFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHCCcchHHhHHHHHHHHHcCc--hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHHHHH
Confidence 999999984 5688899988877765321 1236789999999887 688999999999988 78899999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHHcC---CCCcccHHHHHHHHHHHHH------HHchhchhccC------CCHHHHHHHHH
Q 023425 186 HRASEK--GHAGAAIAYGSLLLRG---VQVPECLTKLNAKRVSAAK------KARANLESNLM------NPVEKAKEQFE 248 (282)
Q Consensus 186 ~~A~~~--g~~~a~~~Lg~~y~~g---~g~~~~~~~A~~~~~~a~~------~a~~~lg~~~~------~~~~~A~~~~~ 248 (282)
.++++. .+..|++..+.++... .+.....+..+.+..+++. .+|..++.+.. ....+|...+.
T Consensus 166 ~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 166 HQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred HHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 999885 5788999999887753 2233345677888888887 47777664321 23456888888
Q ss_pred HHHHhc--cHHHHHHHHHHHHHHh
Q 023425 249 VAAQAG--CNLGLRWLQRIEEEEK 270 (282)
Q Consensus 249 ~Aa~~g--~~~a~~~l~~l~~~~~ 270 (282)
.+.+.+ ++.|...|+.+..+..
T Consensus 246 ~~~~~~~~s~~al~~l~d~~~~~~ 269 (320)
T PLN02789 246 EVLSKDSNHVFALSDLLDLLCEGL 269 (320)
T ss_pred HhhcccCCcHHHHHHHHHHHHhhh
Confidence 887755 6778888888887654
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=6e-09 Score=93.79 Aligned_cols=182 Identities=19% Similarity=0.097 Sum_probs=148.7
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Q 023425 32 RNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAA 111 (282)
Q Consensus 32 ~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~ 111 (282)
+.++-...|.++.+ +.+....++|+.+....+..++++|+.-|++|+.++|.+.-++..|+.+.+..+ ..+++..
T Consensus 375 ~~~~~~~~F~~A~~-ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~----k~~~~m~ 449 (606)
T KOG0547|consen 375 QSEKMWKDFNKAED-LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH----KIAESMK 449 (606)
T ss_pred ccHHHHHHHHHHHh-cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH----HHHHHHH
Confidence 34556666766665 555556788888888888899999999999999999999999999999988663 5699999
Q ss_pred HHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHhcCCCCccCHHHH
Q 023425 112 LLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLH--------PGALYLLGTVYLTGDCVKKDIASA 181 (282)
Q Consensus 112 ~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~--------~~A~~~Lg~~y~~g~g~~~d~~~A 181 (282)
.|+.+.+ +..++.+.-.|.++.+ .++.++|++.|.+|+++.. +--+++-|.+... -.+|+.+|
T Consensus 450 ~Fee~kkkFP~~~Evy~~fAeiLtD----qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q---wk~d~~~a 522 (606)
T KOG0547|consen 450 TFEEAKKKFPNCPEVYNLFAEILTD----QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ---WKEDINQA 522 (606)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHhh----HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc---hhhhHHHH
Confidence 9999997 5788999999999998 4555999999999999843 2333444444433 36999999
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHc
Q 023425 182 LWCFHRASEKG--HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKAR 229 (282)
Q Consensus 182 ~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~ 229 (282)
+.++++|++.+ ...|+-.||.+-.+ .+++++|+++|++++..+.
T Consensus 523 ~~Ll~KA~e~Dpkce~A~~tlaq~~lQ----~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 523 ENLLRKAIELDPKCEQAYETLAQFELQ----RGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHH
Confidence 99999998876 47799999999998 8999999999999987544
No 49
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.08 E-value=1.7e-08 Score=93.72 Aligned_cols=215 Identities=18% Similarity=0.055 Sum_probs=155.1
Q ss_pred chhhhhhcccchHHHHHHHHHHhhhhh-------HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH--------cCCCCH
Q 023425 22 NQHQKRWLHSRNKKAMELIAKGWSALK-------EVDRVIDYCELNDRRLIPLLKTAKENFELALE--------ADNSNT 86 (282)
Q Consensus 22 ~~~~~~~~~~~~~~A~e~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--------~~~g~~ 86 (282)
+........+++++|+.++..++..+. ..........+..+...+.+.+|+..|++|+. .+|-.+
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 355566668999999999999988742 12222222344455556779999999999986 344455
Q ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-----C--CC---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-
Q 023425 87 HARYWLSKLHLKYHVPGACKAMGAALLVDAAN-----M--GD---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ- 155 (282)
Q Consensus 87 ~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-----~--g~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~- 155 (282)
..+.+|+.+|... .++++|..++++|.+ . .+ +..+.+++.++...+.+ ++|..+|+++.+.
T Consensus 284 ~~l~nLa~ly~~~----GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~----Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQ----GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY----EEAKKLLQKALKIY 355 (508)
T ss_pred HHHHHHHHHHhcc----CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch----hHHHHHHHHHHHHH
Confidence 6888999999866 566999999999864 1 22 34677788888875555 8999999988764
Q ss_pred ------CC---HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCCcccHHH
Q 023425 156 ------LH---PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----------GHAGAAIAYGSLLLRGVQVPECLTK 216 (282)
Q Consensus 156 ------g~---~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~~~~~ 216 (282)
.+ +.-..+||.+|+. .+++++|.++|++|+.. +......+||..|.+ .+.+..
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~----~k~~~~ 427 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLK----MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE----LKKYEE 427 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH----hcccch
Confidence 22 4456789999999 99999999999999874 235578899999988 455555
Q ss_pred HHHHHHHHHH-------------HHchhch--hccCCCHHHHHHHHHHHHH
Q 023425 217 LNAKRVSAAK-------------KARANLE--SNLMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 217 A~~~~~~a~~-------------~a~~~lg--~~~~~~~~~A~~~~~~Aa~ 252 (282)
|...|..+.. ..+.||+ +-..++++.|+++-.++..
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5555555544 2344666 3478899999999888773
No 50
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.08 E-value=2.5e-09 Score=83.94 Aligned_cols=120 Identities=13% Similarity=0.031 Sum_probs=95.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Q 023425 38 ELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA 117 (282)
Q Consensus 38 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa 117 (282)
+++.++++..+.. .+..+......+++++|+.+|++++..+|.++.+++.+|.++... .++++|+.+|.+|+
T Consensus 14 ~~~~~al~~~p~~----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~----g~~~~A~~~y~~Al 85 (144)
T PRK15359 14 DILKQLLSVDPET----VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML----KEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHcCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH----hhHHHHHHHHHHHH
Confidence 3455555533332 222333344457799999999999999999999999999999866 57799999999998
Q ss_pred h--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 023425 118 N--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYL 169 (282)
Q Consensus 118 ~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~ 169 (282)
+ ++++++++++|.++...+.. ++|+..|.+|++. +++..+.++|.+..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~----~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEP----GLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCH----HHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 5 68999999999999995555 9999999999987 78888888887643
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.07 E-value=1.7e-09 Score=94.24 Aligned_cols=204 Identities=14% Similarity=-0.066 Sum_probs=81.6
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.|.+.+...... ....... ......+++++|+..++++.+. ++++..+..+..++... .+++++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~~-~~~~~~l-~~l~~~~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~----~~~~~~ 129 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKAN-PQDYERL-IQLLQDGDPEEALKLAEKAYER-DGDPRYLLSALQLYYRL----GDYDEA 129 (280)
T ss_dssp ----------------------------------------------------------------H-HHHT----T-HHHH
T ss_pred ccccccccccccccccccccc-ccccccc-cccccccccccccccccccccc-ccccchhhHHHHHHHHH----hHHHHH
Confidence 566778888777766533221 1111111 1224557788888888877753 35666666666666654 466777
Q ss_pred HHHHHHHHh----CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 023425 110 AALLVDAAN----MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 110 ~~~~~~Aa~----~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
...++++.. ..++..+..+|.++...+.. ++|+.+|++|++. +++.+...++.++.. .++.+++..
T Consensus 130 ~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~----~~A~~~~~~al~~~P~~~~~~~~l~~~li~----~~~~~~~~~ 201 (280)
T PF13429_consen 130 EELLEKLEELPAAPDSARFWLALAEIYEQLGDP----DKALRDYRKALELDPDDPDARNALAWLLID----MGDYDEARE 201 (280)
T ss_dssp HHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH----HHHHHHHHHHHHH-TT-HHHHHHHHHHHCT----TCHHHHHHH
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCChHHHHH
Confidence 777777543 24667777788888774444 8888888888876 567777778877776 677777555
Q ss_pred HHHHHHH--cCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------Hchhch--hccCCCHHHHHHHHHHHHH
Q 023425 184 CFHRASE--KGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------ARANLE--SNLMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 184 ~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------a~~~lg--~~~~~~~~~A~~~~~~Aa~ 252 (282)
.+..... ..++..+..+|.+|.. .+++++|..||+++... ....++ ....|+.++|...++++.+
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~----lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQ----LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHH----HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhcc----cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5555433 3455666777888877 77788888888887762 333444 3366777788887777654
No 52
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=3.3e-08 Score=81.41 Aligned_cols=160 Identities=16% Similarity=0.002 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGAL 161 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~ 161 (282)
..+...||.-|... .|...|..-+++|+ ++.+..++..++.+|..-+.. +.|.+.|++|+.. ++.+-.
T Consensus 35 a~arlqLal~YL~~----gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~----~~A~e~YrkAlsl~p~~GdVL 106 (250)
T COG3063 35 AKARLQLALGYLQQ----GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN----DLADESYRKALSLAPNNGDVL 106 (250)
T ss_pred HHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh----hhHHHHHHHHHhcCCCccchh
Confidence 45777888888876 57799999999998 467999999999999996655 9999999999987 788999
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------Hchh
Q 023425 162 YLLGTVYLTGDCVKKDIASALWCFHRASEKG----HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------ARAN 231 (282)
Q Consensus 162 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------a~~~ 231 (282)
.|-|..+-. .+.+++|..+|++|+..- .+.++-|+|.|-++ .+..+.|.++|+++.+. ....
T Consensus 107 NNYG~FLC~----qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~dp~~~~~~l~ 178 (250)
T COG3063 107 NNYGAFLCA----QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALELDPQFPPALLE 178 (250)
T ss_pred hhhhHHHHh----CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHhCcCCChHHHH
Confidence 999988877 789999999999999863 47789999999998 88899999999999983 2223
Q ss_pred ch--hccCCCHHHHHHHHHHHHHhccHHHHHH
Q 023425 232 LE--SNLMNPVEKAKEQFEVAAQAGCNLGLRW 261 (282)
Q Consensus 232 lg--~~~~~~~~~A~~~~~~Aa~~g~~~a~~~ 261 (282)
+. ....+++..|..++++-...|...|...
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL 210 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQRGGAQAESL 210 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhcccccHHHH
Confidence 33 3467788888888887777665555444
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.7e-08 Score=92.32 Aligned_cols=205 Identities=16% Similarity=0.075 Sum_probs=165.3
Q ss_pred hhhhhHHhhhhhhhcchhh-hhh--------cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 023425 7 KASTLKSAALGLLQSNQHQ-KRW--------LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFEL 77 (282)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~-~~~--------~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 77 (282)
..+.|+..+..++..-++. -+| ..+++++|.-+|.|+-. +.+..+..-.-+|..+..++..++|+..|..
T Consensus 293 ~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~-lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 293 KSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT-LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred ccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh-cCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 4556666666666653322 122 26889999999999765 4333344444556677778889999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 78 ALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 78 a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
|...=||.......+|.-|... .+.+-|.++|.+|. -+.+|--...+|.+.+. .+.+.+|..||+++...
T Consensus 372 Aarl~~G~hlP~LYlgmey~~t----~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 372 AARLMPGCHLPSLYLGMEYMRT----NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEV 443 (611)
T ss_pred HHHhccCCcchHHHHHHHHHHh----ccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHH
Confidence 9999999999999999999865 56799999999996 57899999999999887 55669999999999842
Q ss_pred ----C-----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 023425 156 ----L-----HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSA 224 (282)
Q Consensus 156 ----g-----~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 224 (282)
+ ..+-+.+||.+|.. .+.+++|+.+|++|+.. .++..+..+|.+|.. .+++++|+.+|.+|
T Consensus 444 ik~~~~e~~~w~p~~~NLGH~~Rk----l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l----lgnld~Aid~fhKa 515 (611)
T KOG1173|consen 444 IKSVLNEKIFWEPTLNNLGHAYRK----LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL----LGNLDKAIDHFHKA 515 (611)
T ss_pred hhhccccccchhHHHHhHHHHHHH----HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH----hcChHHHHHHHHHH
Confidence 1 34568999999999 89999999999999875 678899999999998 99999999999999
Q ss_pred HHHH
Q 023425 225 AKKA 228 (282)
Q Consensus 225 ~~~a 228 (282)
....
T Consensus 516 L~l~ 519 (611)
T KOG1173|consen 516 LALK 519 (611)
T ss_pred HhcC
Confidence 7643
No 54
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=3.1e-08 Score=90.81 Aligned_cols=151 Identities=19% Similarity=0.100 Sum_probs=124.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCC-------------------------CcC------------HH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVP-------------------------GAC------------KA 107 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~-------------------------~~~------------~~ 107 (282)
..+-..|+..+++|++++|++-+|+-.|+..|.+.+.- +.+ ..
T Consensus 332 NE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~ 411 (579)
T KOG1125|consen 332 NENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLA 411 (579)
T ss_pred ccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHH
Confidence 35567799999999999999999999999987654210 000 23
Q ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHH
Q 023425 108 MGAALLVDAAN-M---GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASA 181 (282)
Q Consensus 108 ~A~~~~~~Aa~-~---g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A 181 (282)
.-.++|..|+. . -+++-+..||.+|.- .+++++|+.+|+.|+.. .+..-+.+||..+-+ -.+.++|
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN----~~~s~EA 483 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNL----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN----GNRSEEA 483 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhc----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC----CcccHHH
Confidence 34456666663 2 378999999999988 44559999999999987 788899999999999 5679999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Q 023425 182 LWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK 227 (282)
Q Consensus 182 ~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 227 (282)
+.-|++|++. |++.+.||||+.++. .+.+++|.++|-.|+..
T Consensus 484 IsAY~rALqLqP~yVR~RyNlgIS~mN----lG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 484 ISAYNRALQLQPGYVRVRYNLGISCMN----LGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCCeeeeehhhhhhhhh----hhhHHHHHHHHHHHHHh
Confidence 9999999875 789999999999999 89999999999999873
No 55
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.97 E-value=1.5e-08 Score=78.12 Aligned_cols=109 Identities=15% Similarity=0.022 Sum_probs=94.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHH
Q 023425 73 ENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIE 150 (282)
Q Consensus 73 ~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~ 150 (282)
..|+++++.+|+++.+.+.+|..+... .++++|..+|+++++ +.++++++++|.++.. .+++++|+.+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ----GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LKEYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 468889999999999999999999865 577999999999875 5688999999999988 445599999999
Q ss_pred HHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 151 KAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 151 kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
++.+. .++..++.+|.+|.. .+++++|+.+|+++++...
T Consensus 76 ~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 76 LAAALDPDDPRPYFHAAECLLA----LGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcc
Confidence 99877 578999999999998 8999999999999988653
No 56
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.94 E-value=7.7e-09 Score=91.49 Aligned_cols=213 Identities=13% Similarity=0.049 Sum_probs=124.3
Q ss_pred hhhhcccchHHHHHHHHHHhhhhhH---HHHHHHHHhhcCCCchhhHHHHHHHH------HHHHHcCCCCHHHHHHHHHH
Q 023425 25 QKRWLHSRNKKAMELIAKGWSALKE---VDRVIDYCELNDRRLIPLLKTAKENF------ELALEADNSNTHARYWLSKL 95 (282)
Q Consensus 25 ~~~~~~~~~~~A~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~------~~a~~~~~g~~~a~~~Lg~~ 95 (282)
+.-...++....+.+|..++....+ .-..++-..|+.+-..+|+++|+++- .+.+--.-|-+.+.-+||..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3344567778888888887764442 22344556677777778888888873 33333445667777788887
Q ss_pred HhcCCCCCcCHHHHHHHHHHH----HhCC----CHHHHHHHHHHHhcCCCC-----c-----------CCHHHHHHHHHH
Q 023425 96 HLKYHVPGACKAMGAALLVDA----ANMG----DPDAQYELGCRLRVENDY-----V-----------QSDQQAFYYIEK 151 (282)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~A----a~~g----~~~A~~~Lg~~y~~g~~~-----~-----------~d~~~A~~~~~k 151 (282)
+--. ..+++|+.+..+- -+.| ...|+||||.+|...+.. + .+.+.|.++|..
T Consensus 105 lKv~----G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 105 LKVK----GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred hhhh----cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 7633 4557776655543 3444 467888888888753321 1 123456666655
Q ss_pred HHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHH----HHHcCC----HHHHHHHHHHHHcCCCCcccHH
Q 023425 152 AVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHR----ASEKGH----AGAAIAYGSLLLRGVQVPECLT 215 (282)
Q Consensus 152 Aa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~----A~~~g~----~~a~~~Lg~~y~~g~g~~~~~~ 215 (282)
-.+. |+ ..|+-+||..|+- .+|+++|+++-+. |-+-|+ -.|.-|||.+|.- ..+++
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif----lg~fe 252 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF----LGNFE 252 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeee----eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh----hcccH
Confidence 4432 32 3445566666665 6667666665433 223344 2355666666665 56666
Q ss_pred HHHHHHHHHHH------------HHchhchh--ccCCCHHHHHHHHHH
Q 023425 216 KLNAKRVSAAK------------KARANLES--NLMNPVEKAKEQFEV 249 (282)
Q Consensus 216 ~A~~~~~~a~~------------~a~~~lg~--~~~~~~~~A~~~~~~ 249 (282)
.|+++|+++.. +.+|.||. ....++++|+.|+.+
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 66666665543 34555552 244456666666554
No 57
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.93 E-value=3.7e-07 Score=83.65 Aligned_cols=223 Identities=9% Similarity=-0.026 Sum_probs=124.3
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARY-WLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~-~Lg~~~~~~~~~~~~~~~ 108 (282)
.|++++|...+.++.... +.....+......-...++++.|..+|+++.+.+|++..+.. ..+.++... ++++.
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~----g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR----NENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC----CCHHH
Confidence 466666665555543321 111222222222223345566666666666655555433322 224555433 35566
Q ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHH--------------------------------------
Q 023425 109 GAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYY-------------------------------------- 148 (282)
Q Consensus 109 A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~-------------------------------------- 148 (282)
|...+++.. .++++.+...++.+|.. ..|+++|+..
T Consensus 172 Al~~l~~~~~~~P~~~~al~ll~~~~~~----~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 247 (398)
T PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIR----TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG 247 (398)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 666666654 24556666666655554 2222333311
Q ss_pred ----HHHHHH--cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 023425 149 ----IEKAVD--QLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG-HAGAAIAYGSLLLRGVQVPECLTKLNAKR 221 (282)
Q Consensus 149 ----~~kAa~--~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 221 (282)
++...+ ..++.+...++..+.. .++.++|...++++.+.. ++......+.+. .++.+++....
T Consensus 248 l~~~w~~lp~~~~~~~~~~~~~A~~l~~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~------~~~~~~al~~~ 317 (398)
T PRK10747 248 LKRWWKNQSRKTRHQVALQVAMAEHLIE----CDDHDTAQQIILDGLKRQYDERLVLLIPRLK------TNNPEQLEKVL 317 (398)
T ss_pred HHHHHHhCCHHHhCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhcc------CCChHHHHHHH
Confidence 111111 1578888888888888 888999999998888754 343333333331 25556666555
Q ss_pred HHHHH------HHchhch--hccCCCHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHhh
Q 023425 222 VSAAK------KARANLE--SNLMNPVEKAKEQFEVAAQAGCNLG-LRWLQRIEEEEKR 271 (282)
Q Consensus 222 ~~a~~------~a~~~lg--~~~~~~~~~A~~~~~~Aa~~g~~~a-~~~l~~l~~~~~~ 271 (282)
++..+ ..+..+| ....+++.+|..+|+++.+..+... +..|+.+.+...+
T Consensus 318 e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 318 RQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 55544 2455566 3477788899999999988875444 4788888776543
No 58
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.93 E-value=1.5e-08 Score=89.69 Aligned_cols=220 Identities=14% Similarity=0.035 Sum_probs=148.1
Q ss_pred chhhhhhcccchHHHHHHHHHHhhh---hh--HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH----c--CCCCHHHHH
Q 023425 22 NQHQKRWLHSRNKKAMELIAKGWSA---LK--EVDRVIDYCELNDRRLIPLLKTAKENFELALE----A--DNSNTHARY 90 (282)
Q Consensus 22 ~~~~~~~~~~~~~~A~e~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~--~~g~~~a~~ 90 (282)
..+..-...++|++|+++-.--+.. +. ....-..-+.|+...++++|++|+.+-.+-+. + .-+-+.|+|
T Consensus 60 QLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlY 139 (639)
T KOG1130|consen 60 QLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALY 139 (639)
T ss_pred HhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHh
Confidence 3344444567899998863332221 11 11112233566778888999999887666553 1 123567999
Q ss_pred HHHHHHhcCCC-----CC-----------cCHHHHHHHHHHHHh----CCC----HHHHHHHHHHHhcCCCCcCCHHHHH
Q 023425 91 WLSKLHLKYHV-----PG-----------ACKAMGAALLVDAAN----MGD----PDAQYELGCRLRVENDYVQSDQQAF 146 (282)
Q Consensus 91 ~Lg~~~~~~~~-----~~-----------~~~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~g~~~~~d~~~A~ 146 (282)
+||.+|...+. .+ .+.+.|+++|..-.+ .|+ ..|+-+||+.|+-- .|++.|+
T Consensus 140 NlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL----Gdf~~ai 215 (639)
T KOG1130|consen 140 NLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLL----GDFDQAI 215 (639)
T ss_pred hhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeee----ccHHHHH
Confidence 99999984421 11 113566677666543 343 35677888887764 4448888
Q ss_pred HHHHHHHH----cCC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHH----HHcCC----HHHHHHHHHHHHcCCCC
Q 023425 147 YYIEKAVD----QLH----PGALYLLGTVYLTGDCVKKDIASALWCFHRA----SEKGH----AGAAIAYGSLLLRGVQV 210 (282)
Q Consensus 147 ~~~~kAa~----~g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A----~~~g~----~~a~~~Lg~~y~~g~g~ 210 (282)
.+-+.=.+ .|+ -.|..+||.+|.- .++++.|+++|+++ ++.|+ +..||.||..|.-
T Consensus 216 ~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif----lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl---- 287 (639)
T KOG1130|consen 216 HFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF----LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL---- 287 (639)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhcccchhhhh----hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH----
Confidence 87655433 244 4677899999988 99999999999986 45565 5679999999987
Q ss_pred cccHHHHHHHHHHHHH------------HHchhchhc--cCCCHHHHHHHHHHHHHh
Q 023425 211 PECLTKLNAKRVSAAK------------KARANLESN--LMNPVEKAKEQFEVAAQA 253 (282)
Q Consensus 211 ~~~~~~A~~~~~~a~~------------~a~~~lg~~--~~~~~~~A~~~~~~Aa~~ 253 (282)
-+++++|+.|+.+-.. .+++.||.. ..++..+|+++.++..+.
T Consensus 288 l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 288 LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7889999999988755 467778843 566778888887776654
No 59
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=1.2e-07 Score=80.27 Aligned_cols=160 Identities=14% Similarity=0.067 Sum_probs=119.1
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCH---HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 81 ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDP---DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 81 ~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~---~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
.++..+..++.+|..+... ++++.|+..|+++++. +++ .+++.+|.+|.. ..++++|+..|+++.+.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDS----GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEAIAAADRFIRL 99 (235)
T ss_pred cccCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Confidence 4567888999999998865 5779999999999853 444 688999999998 45569999999999986
Q ss_pred --CCH---HHHHHHHHHHhcCC----CCccCHHHHHHHHHHHHHcC--CHHH-----------------HHHHHHHHHcC
Q 023425 156 --LHP---GALYLLGTVYLTGD----CVKKDIASALWCFHRASEKG--HAGA-----------------AIAYGSLLLRG 207 (282)
Q Consensus 156 --g~~---~A~~~Lg~~y~~g~----g~~~d~~~A~~~~~~A~~~g--~~~a-----------------~~~Lg~~y~~g 207 (282)
+++ .+++.+|.++..-. ...+++++|++.|++++... ++.+ .+.+|.+|..
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~- 178 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK- 178 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 334 47999999998621 12378999999999998753 2222 2356677766
Q ss_pred CCCcccHHHHHHHHHHHHH---------HHchhchh--ccCCCHHHHHHHHHHHHH
Q 023425 208 VQVPECLTKLNAKRVSAAK---------KARANLES--NLMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 208 ~g~~~~~~~A~~~~~~a~~---------~a~~~lg~--~~~~~~~~A~~~~~~Aa~ 252 (282)
.+++.+|+.+|+++.. .+++.+|. ...+++++|..+++....
T Consensus 179 ---~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 179 ---RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred ---cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778888888888765 35566663 367777888877766554
No 60
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.88 E-value=5.9e-07 Score=87.21 Aligned_cols=140 Identities=11% Similarity=0.030 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHH
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~ 144 (282)
+..++..+-+.= |.+++++.+||.+....+ .+++|..+++.++ .+++..|..+++.++...+++ ++
T Consensus 71 ~~~~~~~~~~~~----~~~~~~~~~La~i~~~~g----~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~----ee 138 (694)
T PRK15179 71 ALPELLDYVRRY----PHTELFQVLVARALEAAH----RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGI----EA 138 (694)
T ss_pred hHHHHHHHHHhc----cccHHHHHHHHHHHHHcC----CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccH----HH
Confidence 355555555443 567999999999998774 4599999999998 478999999999999995555 99
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHH
Q 023425 145 AFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAK 220 (282)
Q Consensus 145 A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 220 (282)
|+.+++++... .++.+++.+|.++.. .+++++|+.+|++++.+ +++.++.++|.+++. .++.+.|...
T Consensus 139 A~~~~~~~l~~~p~~~~~~~~~a~~l~~----~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~----~G~~~~A~~~ 210 (694)
T PRK15179 139 GRAEIELYFSGGSSSAREILLEAKSWDE----IGQSEQADACFERLSRQHPEFENGYVGWAQSLTR----RGALWRARDV 210 (694)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHH----hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 99999999887 799999999999999 99999999999999965 468999999999998 7888888888
Q ss_pred HHHHHH
Q 023425 221 RVSAAK 226 (282)
Q Consensus 221 ~~~a~~ 226 (282)
|++|++
T Consensus 211 ~~~a~~ 216 (694)
T PRK15179 211 LQAGLD 216 (694)
T ss_pred HHHHHH
Confidence 888876
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.87 E-value=1.2e-06 Score=75.69 Aligned_cols=188 Identities=17% Similarity=0.047 Sum_probs=130.4
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-CCC-----HHHHHHHHHHHhcCCC
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN-MGD-----PDAQYELGCRLRVEND 137 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-~g~-----~~A~~~Lg~~y~~g~~ 137 (282)
...+.++|++.|...++.+|...+++..||.++...+.+ +.|+..-.--.+ ++. .-|.+.||.-|...+-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEv----DRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEV----DRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchH----HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 335578999999999988888899999999999876444 888876555543 232 3467777777776555
Q ss_pred CcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHcCC
Q 023425 138 YVQSDQQAFYYIEKAVDQL--HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAG-------AAIAYGSLLLRGV 208 (282)
Q Consensus 138 ~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~-------a~~~Lg~~y~~g~ 208 (282)
+ +.|...|..-.+.+ -..|.-.|-.+|.. .+++++|+..-++-+..+... -+..|+.-+..
T Consensus 123 ~----DRAE~~f~~L~de~efa~~AlqqLl~IYQ~----treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~-- 192 (389)
T COG2956 123 L----DRAEDIFNQLVDEGEFAEGALQQLLNIYQA----TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA-- 192 (389)
T ss_pred h----hHHHHHHHHHhcchhhhHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh--
Confidence 5 78888888877754 36677778888877 788888888877766655422 23444554444
Q ss_pred CCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 023425 209 QVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAGCNLGLRWLQRIEE 267 (282)
Q Consensus 209 g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g~~~a~~~l~~l~~ 267 (282)
..+.++|..++++|.+ .+..-+|. ..++++.+|++-++...++....--..+..+.+
T Consensus 193 --~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 193 --SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred --hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 6777778888888876 34455663 367788888888888887776655544444444
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.84 E-value=1.9e-07 Score=86.89 Aligned_cols=159 Identities=14% Similarity=0.046 Sum_probs=124.8
Q ss_pred HHHHhhcCCCchhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-----CC
Q 023425 54 IDYCELNDRRLIPLLKTAKENFELALEA--------DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN-----MG 120 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-----~g 120 (282)
+....+..+-..+++++|+.+++.|++. .|.-.....++|.+|... ..+.+|+..|++|.. .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~----~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL----GKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHhcC
Confidence 3333555666678899999999999986 444445556699999976 566999999999974 12
Q ss_pred --C---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 121 --D---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-------LH---PGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 121 --~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-------g~---~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
+ +..+.+||.+|...+.+ .+|..++++|.+. .+ +..+.+++.++.. .+++++|+.++
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf----~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~Eea~~l~ 348 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKF----AEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS----MNEYEEAKKLL 348 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcchhHHHHHH
Confidence 3 46899999999987777 8888888888773 12 4556778888888 89999999999
Q ss_pred HHHHHc-------CC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH
Q 023425 186 HRASEK-------GH---AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA 228 (282)
Q Consensus 186 ~~A~~~-------g~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a 228 (282)
+++.+. .+ +.-..+||.+|.. .+.+++|.+.|++|+...
T Consensus 349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 349 QKALKIYLDAPGEDNVNLAKIYANLAELYLK----MGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHH
Confidence 999663 22 4458899999999 899999999999999843
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.84 E-value=1.7e-06 Score=79.24 Aligned_cols=207 Identities=10% Similarity=0.022 Sum_probs=151.2
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|.+++.++.+..++................+++++|...+++..+.+|+++.+...++.+|... +++++
T Consensus 130 ~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~----gdw~~ 205 (398)
T PRK10747 130 QRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT----GAWSS 205 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HhHHH
Confidence 37889999999999876444432222222233344468899999999999999999999999999999866 68899
Q ss_pred HHHHHHHHHhCC--------------------------------------------CHHHHHHHHHHHhcCCCCcCCHHH
Q 023425 109 GAALLVDAANMG--------------------------------------------DPDAQYELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 109 A~~~~~~Aa~~g--------------------------------------------~~~A~~~Lg~~y~~g~~~~~d~~~ 144 (282)
|+..+.+..+.+ ++++...++..+.. ..+.++
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~----~g~~~~ 281 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE----CDDHDT 281 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH----CCCHHH
Confidence 998888886432 22233334444444 244588
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 023425 145 AFYYIEKAVDQL-HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKR 221 (282)
Q Consensus 145 A~~~~~kAa~~g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 221 (282)
|...++++.+.. ++......+.+ . .++++++++..++..++ +++...+.+|.++.. .+++++|..+|
T Consensus 282 A~~~L~~~l~~~~~~~l~~l~~~l--~----~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~----~~~~~~A~~~l 351 (398)
T PRK10747 282 AQQIILDGLKRQYDERLVLLIPRL--K----TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK----HGEWQEASLAF 351 (398)
T ss_pred HHHHHHHHHhcCCCHHHHHHHhhc--c----CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHH
Confidence 888888888753 44333333332 2 47899999999888775 678889999999999 89999999999
Q ss_pred HHHHHH-----Hchhchh--ccCCCHHHHHHHHHHHHHh
Q 023425 222 VSAAKK-----ARANLES--NLMNPVEKAKEQFEVAAQA 253 (282)
Q Consensus 222 ~~a~~~-----a~~~lg~--~~~~~~~~A~~~~~~Aa~~ 253 (282)
+++.+. .+..++. ...++.++|..+|+++..+
T Consensus 352 e~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 352 RAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999873 4445663 3778899999999988764
No 64
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.83 E-value=9.4e-07 Score=81.32 Aligned_cols=86 Identities=7% Similarity=0.013 Sum_probs=49.2
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|.+++.++....+.................+++++|...+++..+..|+++.+...++.++... +|++.|
T Consensus 131 ~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~----~d~~~a 206 (409)
T TIGR00540 131 RGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS----GAWQAL 206 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hhHHHH
Confidence 3566777777766544322211111111111122235577888888888887788888888888777755 455666
Q ss_pred HHHHHHHHhC
Q 023425 110 AALLVDAANM 119 (282)
Q Consensus 110 ~~~~~~Aa~~ 119 (282)
...+.+..+.
T Consensus 207 ~~~l~~l~k~ 216 (409)
T TIGR00540 207 DDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHc
Confidence 6655555543
No 65
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.83 E-value=1.1e-07 Score=82.99 Aligned_cols=189 Identities=14% Similarity=0.029 Sum_probs=125.2
Q ss_pred hhhhhHHhhhhhhhcchhhhhhc---ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcC-
Q 023425 7 KASTLKSAALGLLQSNQHQKRWL---HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEAD- 82 (282)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 82 (282)
.|..|+..+--.+.+..+..... ..++++|.+.|.++...... .+++++|...|.+|++..
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~---------------~~~~~~A~~ay~kAa~~~~ 66 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKL---------------AKDWEKAAEAYEKAADCYE 66 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHH---------------TT-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHH---------------HhccchhHHHHHHHHHHHH
Confidence 45666666655555443322222 23799999999987652221 244788888888887621
Q ss_pred -CCC----HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh----CCCH----HHHHHHHHHHhcCCCCcCCHHHHHHHH
Q 023425 83 -NSN----THARYWLSKLHLKYHVPGACKAMGAALLVDAAN----MGDP----DAQYELGCRLRVENDYVQSDQQAFYYI 149 (282)
Q Consensus 83 -~g~----~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~----~g~~----~A~~~Lg~~y~~g~~~~~d~~~A~~~~ 149 (282)
.++ +.++...+.+|... ++++|+.+|++|++ .|.+ ..+..+|.+|... ..|+++|+++|
T Consensus 67 ~~~~~~~Aa~~~~~Aa~~~k~~-----~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~---~~d~e~Ai~~Y 138 (282)
T PF14938_consen 67 KLGDKFEAAKAYEEAANCYKKG-----DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ---LGDYEKAIEYY 138 (282)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT---T--HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH
Confidence 122 23455667777654 77999999999974 5654 5788899999873 15669999999
Q ss_pred HHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC------C---HHHHHHHHHHHHcCCCCcc
Q 023425 150 EKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG------H---AGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 150 ~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g------~---~~a~~~Lg~~y~~g~g~~~ 212 (282)
++|++. +. ..+...+|.++.. .+++++|++.|++.+..- . ...++..+.|++. .+
T Consensus 139 ~~A~~~y~~e~~~~~a~~~~~~~A~l~~~----l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~----~~ 210 (282)
T PF14938_consen 139 QKAAELYEQEGSPHSAAECLLKAADLYAR----LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA----MG 210 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHCCChhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH----cC
Confidence 999985 32 4566788999988 889999999999987641 1 2345677888887 67
Q ss_pred cHHHHHHHHHHHHH
Q 023425 213 CLTKLNAKRVSAAK 226 (282)
Q Consensus 213 ~~~~A~~~~~~a~~ 226 (282)
|+..|...+++...
T Consensus 211 D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 211 DYVAARKALERYCS 224 (282)
T ss_dssp -HHHHHHHHHHHGT
T ss_pred CHHHHHHHHHHHHh
Confidence 88877777777653
No 66
>PLN02789 farnesyltranstransferase
Probab=98.82 E-value=8.6e-07 Score=78.62 Aligned_cols=190 Identities=11% Similarity=-0.066 Sum_probs=139.4
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCc-hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRL-IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
.++.++|++.+.+++...+.......+.. ..... ..++++++.++.++++.+|.+..++++.+.++...+. ...++
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~-~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~--~~~~~ 126 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRR-LCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP--DAANK 126 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHH-HHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc--hhhHH
Confidence 45689999999999885554433332221 11112 2368999999999999999999999999988875421 12367
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC---CCCccCHHHH
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTG---DCVKKDIASA 181 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g---~g~~~d~~~A 181 (282)
++.++.++++ +.+..|+...|.++..- .+++++++++.++++. .+..|++..|.++... .+.....+.+
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l----~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTL----GGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 7899999985 56899999999998874 4469999999999986 6899999999887653 1223345678
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 182 LWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 182 ~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+.+..+++.. .+..+++.++.++.....-.....++...+..+..
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 9999999865 67899999999998732111334457777766654
No 67
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.80 E-value=2e-07 Score=77.11 Aligned_cols=112 Identities=13% Similarity=-0.009 Sum_probs=91.7
Q ss_pred CcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH-hcCCCCccC
Q 023425 103 GACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVY-LTGDCVKKD 177 (282)
Q Consensus 103 ~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y-~~g~g~~~d 177 (282)
..+.++++..+++++ +++++++++.||.+|...+ ++++|+..|.+|... +++..+..+|.++ .. .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g----~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~----~g~ 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRN----DYDNALLAYRQALQLRGENAELYAALATVLYYQ----AGQ 123 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCC
Confidence 356789999999997 4689999999999999844 459999999999997 6899999999974 44 333
Q ss_pred --HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 178 --IASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 178 --~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.++|...+++++.. .++.++++||..++. .+++++|+.+++++.+
T Consensus 124 ~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 124 HMTPQTREMIDKALALDANEVTALMLLASDAFM----QADYAQAIELWQKVLD 172 (198)
T ss_pred CCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 69999999999886 579999999999998 7777665555555543
No 68
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.80 E-value=4.8e-08 Score=76.60 Aligned_cols=91 Identities=12% Similarity=-0.031 Sum_probs=57.7
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhc
Q 023425 57 CELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRV 134 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~ 134 (282)
..+......+++++|++.|+..+..+|.++..+++||.++... +++++|+..|.+|+ ++++|.+++++|.+++.
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~----g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ----KHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3333333445577777777777777777777777777776644 45677777777765 44567777777777666
Q ss_pred CCCCcCCHHHHHHHHHHHHHc
Q 023425 135 ENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~~ 155 (282)
.+.. +.|...|+.|+..
T Consensus 116 lG~~----~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNV----CYAIKALKAVVRI 132 (157)
T ss_pred cCCH----HHHHHHHHHHHHH
Confidence 4444 6666666666654
No 69
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.78 E-value=1.3e-07 Score=74.12 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 023425 83 NSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHP 158 (282)
Q Consensus 83 ~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~ 158 (282)
+..-+..|.+|..+... .++++|...|+..+ ++-+++.+++||.++.. .+++++|+..|.+|+.. ++|
T Consensus 32 ~~~l~~lY~~A~~ly~~----G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~----~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEV----KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA----QKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCc
Confidence 45666778888877765 46788888888887 45678888888888887 55668899999888876 788
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.+.+++|.||+. .++.+.|++.|+.|+..
T Consensus 104 ~~~~~ag~c~L~----lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 104 QAPWAAAECYLA----CDNVCYAIKALKAVVRI 132 (157)
T ss_pred hHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 888899988888 88888888888888764
No 70
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.74 E-value=2e-06 Score=85.01 Aligned_cols=146 Identities=6% Similarity=-0.135 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHH--HHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYE--LGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~--Lg~~y~~g~~~~~d~~ 143 (282)
++++.|+..|+++++.+|.++.+.+.+..++... .+.++|+.++++++.+.+....-. +|.+|.. .++++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~----G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~----~gdyd 119 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA----GRDQEVIDVYERYQSSMNISSRGLASAARAYRN----EKRWD 119 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc----CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCCHH
Confidence 3478999999999999999865555666666644 456899999999997655444444 4778888 55669
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKR 221 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 221 (282)
+|++.|+++++. +++.++..|+..|.. .++.++|++.++++.........+ ++..|.... ..+..+|+..|
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~----~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~--~~~~~~AL~~~ 192 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQAD----AGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA--TDRNYDALQAS 192 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh--cchHHHHHHHH
Confidence 999999999987 678888888888888 799999999999987764433332 555555421 44554588888
Q ss_pred HHHHH
Q 023425 222 VSAAK 226 (282)
Q Consensus 222 ~~a~~ 226 (282)
+++++
T Consensus 193 ekll~ 197 (822)
T PRK14574 193 SEAVR 197 (822)
T ss_pred HHHHH
Confidence 88866
No 71
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.70 E-value=4.3e-07 Score=69.95 Aligned_cols=103 Identities=14% Similarity=0.011 Sum_probs=83.4
Q ss_pred HHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 111 ALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 111 ~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
..|++++. ++++.+.+.+|..+... .++++|..+|++++.. .++.+++.+|.+|.. .+++++|+.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ----GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LKEYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 45677764 45788999999999984 4559999999999886 688999999999998 899999999999
Q ss_pred HHHHcC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 187 RASEKG--HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 187 ~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
+++..+ ++..++++|.+|.. .+++++|..+++++.
T Consensus 76 ~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al 112 (135)
T TIGR02552 76 LAAALDPDDPRPYFHAAECLLA----LGEPESALKALDLAI 112 (135)
T ss_pred HHHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 997754 58889999999997 666765555554443
No 72
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=2.8e-07 Score=89.42 Aligned_cols=127 Identities=6% Similarity=-0.137 Sum_probs=112.0
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHH
Q 023425 53 VIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGC 130 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~ 130 (282)
..++..+......+.+++|..+++.+++..|++..|..+++.++... +..++|..+++++. ++.++.+++.+|.
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~----~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ----QGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh----ccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 34444445555567799999999999999999999999999999977 45699999999997 5789999999999
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 131 RLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 131 ~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
++..-+.+ ++|+..|++++.. +++.++..+|.++.. .++.++|...|++|++.
T Consensus 163 ~l~~~g~~----~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~----~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQS----EQADACFERLSRQHPEFENGYVGWAQSLTR----RGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcch----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 99996666 9999999999975 578999999999999 89999999999999886
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.68 E-value=1.5e-06 Score=77.96 Aligned_cols=150 Identities=12% Similarity=-0.093 Sum_probs=110.6
Q ss_pred CchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcC
Q 023425 63 RLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQ 140 (282)
Q Consensus 63 ~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~ 140 (282)
...+++++|...++++++.+|+++.++.. +..+...+........+.+.+.... .++.+.+...+|.++...+..
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~-- 130 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY-- 130 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH--
Confidence 33467999999999999999999988775 4444322222233344444444421 234556777888888884444
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCcc
Q 023425 141 SDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH------AGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 141 d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~------~~a~~~Lg~~y~~g~g~~~ 212 (282)
++|...++++++. .++.++..+|.+|.. .+++++|+.+++++..... ...+..++.++.. .+
T Consensus 131 --~~A~~~~~~al~~~p~~~~~~~~la~i~~~----~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~----~G 200 (355)
T cd05804 131 --DRAEEAARRALELNPDDAWAVHAVAHVLEM----QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE----RG 200 (355)
T ss_pred --HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH----CC
Confidence 9999999999987 578888999999998 8999999999999987531 2245678999988 88
Q ss_pred cHHHHHHHHHHHH
Q 023425 213 CLTKLNAKRVSAA 225 (282)
Q Consensus 213 ~~~~A~~~~~~a~ 225 (282)
++++|+.+|+++.
T Consensus 201 ~~~~A~~~~~~~~ 213 (355)
T cd05804 201 DYEAALAIYDTHI 213 (355)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998875
No 74
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.66 E-value=1.2e-05 Score=74.01 Aligned_cols=225 Identities=14% Similarity=-0.035 Sum_probs=147.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNT-HARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~-~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
.|+++.|...+.++.... +.....+...+......+++++|..+|+++.+..|++. .....++.++... ++++.
T Consensus 97 ~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~----~~~~~ 171 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ----NELHA 171 (409)
T ss_pred CCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC----CCHHH
Confidence 677888888887776532 33334444444555556889999999999998777765 3444468887765 57799
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-------------------------------
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ------------------------------- 155 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~------------------------------- 155 (282)
|...+++..+ +.++.+...++.++... +|++.|...+.+..+.
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~----~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRS----GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999874 67999999999998873 3334444444433322
Q ss_pred -------------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHH----HHHHHHHHcCCCCcccHHHHH
Q 023425 156 -------------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAA----IAYGSLLLRGVQVPECLTKLN 218 (282)
Q Consensus 156 -------------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~----~~Lg~~y~~g~g~~~~~~~A~ 218 (282)
.++.....++..+.. .+++++|.+.++++.+....... .-....... +.+.+.+.
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~----~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~----~~~~~~~~ 319 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLID----CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK----PEDNEKLE 319 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC----CCChHHHH
Confidence 245566666666666 78889999999998885332221 112222222 45667777
Q ss_pred HHHHHHHH----HH--ch--hch--hccCCCHHHHHHHHHH--HHHhc-cHHHHHHHHHHHHHHhh
Q 023425 219 AKRVSAAK----KA--RA--NLE--SNLMNPVEKAKEQFEV--AAQAG-CNLGLRWLQRIEEEEKR 271 (282)
Q Consensus 219 ~~~~~a~~----~a--~~--~lg--~~~~~~~~~A~~~~~~--Aa~~g-~~~a~~~l~~l~~~~~~ 271 (282)
..++++.+ .. .. .+| ....+++++|.++|++ +.+.. ++.....|+.+.....+
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~ 385 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGD 385 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCC
Confidence 77777765 22 22 456 3478899999999994 54433 44455677877775543
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=1.4e-05 Score=69.21 Aligned_cols=204 Identities=14% Similarity=0.008 Sum_probs=110.0
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHhcCCCCCcCH
Q 023425 32 RNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTH-----ARYWLSKLHLKYHVPGACK 106 (282)
Q Consensus 32 ~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~-----a~~~Lg~~~~~~~~~~~~~ 106 (282)
+.++|++.|...+... +..-...+..|+-+...+..+.|+..=+-.++ .|+.+. |.+.||.=|...+..
T Consensus 50 Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~---- 123 (389)
T COG2956 50 QPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLL---- 123 (389)
T ss_pred CcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhh----
Confidence 3677877776655422 22223344444444455556777766665553 344433 444555555544333
Q ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHhcCCCCccC
Q 023425 107 AMGAALLVDAANMG--DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHP-------GALYLLGTVYLTGDCVKKD 177 (282)
Q Consensus 107 ~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~-------~A~~~Lg~~y~~g~g~~~d 177 (282)
+.|...|..-++.| -..|.-.|-.+|.. .+++++|++.-++-...+.- .-+..|+..+.. ..|
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~----treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~----~~~ 195 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQA----TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA----SSD 195 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh----hhh
Confidence 66666666666543 24566666666665 55666666666665555322 222334444444 566
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhch---------hccCCCHHHHHHH
Q 023425 178 IASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLE---------SNLMNPVEKAKEQ 246 (282)
Q Consensus 178 ~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg---------~~~~~~~~~A~~~ 246 (282)
+++|+.++.+|++- ..+.|-..||.++.. .+++++|++.++...++-.-.++ +-..++.++...|
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~----~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELA----KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHh----ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 66666666666543 345566666666666 66666666666666653222222 2244455555666
Q ss_pred HHHHHHh
Q 023425 247 FEVAAQA 253 (282)
Q Consensus 247 ~~~Aa~~ 253 (282)
+.++.+.
T Consensus 272 L~~~~~~ 278 (389)
T COG2956 272 LRRAMET 278 (389)
T ss_pred HHHHHHc
Confidence 6555553
No 76
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.59 E-value=7.1e-07 Score=80.53 Aligned_cols=96 Identities=15% Similarity=-0.012 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|++|++.+|+++.+++++|.+|... .++++|+..+.+|++ +.++.+++.+|.+|.. ..+++
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~----g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~----lg~~~ 87 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKL----GNFTEAVADANKAIELDPSLAKAYLRKGTACMK----LEEYQ 87 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----hCCHH
Confidence 4599999999999999999999999999999976 577999999999975 5789999999999998 45559
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYL 169 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~ 169 (282)
+|+.+|+++++. +++.+...++.|..
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999987 68889888888844
No 77
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.58 E-value=3e-06 Score=74.05 Aligned_cols=185 Identities=21% Similarity=0.160 Sum_probs=124.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Q 023425 35 KAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLV 114 (282)
Q Consensus 35 ~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~ 114 (282)
+|.+++.++-..+....+.+.+ . ....+++++|...|++|.. +|... +++++|...|.
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~-f---~~~~~~~e~Aa~~y~~Aa~--------------~fk~~----~~~~~A~~ay~ 59 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSF-F---GSKKPDYEEAADLYEKAAN--------------CFKLA----KDWEKAAEAYE 59 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCH-H-----SCHHHHHHHHHHHHHHH--------------HHHHT----T-CHHHHHHHH
T ss_pred CHHHHHHHHHHHhccccchhhh-c---CCCCCCHHHHHHHHHHHHH--------------HHHHH----hccchhHHHHH
Confidence 5666666665544433111100 0 0123589999999999942 33333 46689999999
Q ss_pred HHHh----CCC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCc-cC
Q 023425 115 DAAN----MGD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LH----PGALYLLGTVYLTGDCVK-KD 177 (282)
Q Consensus 115 ~Aa~----~g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~g~g~~-~d 177 (282)
+|++ .++ ..++...+.+|... ++++|+.+|++|++. |. +.++.++|.+|.. . +|
T Consensus 60 kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-----~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~----~~~d 130 (282)
T PF14938_consen 60 KAADCYEKLGDKFEAAKAYEEAANCYKKG-----DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE----QLGD 130 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC----TT--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HcCC
Confidence 9974 344 34566677787764 679999999999885 55 5677899999998 6 89
Q ss_pred HHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH------c-------hhch--h
Q 023425 178 IASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA------R-------ANLE--S 234 (282)
Q Consensus 178 ~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a------~-------~~lg--~ 234 (282)
+++|+++|++|++. +. .....+++.++.. .+++++|+..|++.+... . +..+ .
T Consensus 131 ~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~----l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~ 206 (282)
T PF14938_consen 131 YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR----LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCH 206 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 99999999999874 33 4457789999998 789999999999988621 1 1122 2
Q ss_pred ccCCCHHHHHHHHHHHHHhc
Q 023425 235 NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 235 ~~~~~~~~A~~~~~~Aa~~g 254 (282)
+..+|...|...|++.....
T Consensus 207 L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 207 LAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHTT-HHHHHHHHHHHGTTS
T ss_pred HHcCCHHHHHHHHHHHHhhC
Confidence 36788999999998887653
No 78
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.56 E-value=4.3e-06 Score=80.50 Aligned_cols=148 Identities=16% Similarity=0.065 Sum_probs=119.7
Q ss_pred CchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcC
Q 023425 63 RLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQ 140 (282)
Q Consensus 63 ~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~ 140 (282)
.+.+++++|+..+...|..+|.++.|++.||.+|.+. +|.+++...+..|+ ++++++-|..++.+..+.+.+
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqr----Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i-- 223 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQR----GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI-- 223 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHc----ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH--
Confidence 3446799999999999999999999999999999977 47799999999998 578999999999999885444
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCCCc
Q 023425 141 SDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH-------AGAAIAYGSLLLRGVQVP 211 (282)
Q Consensus 141 d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~-------~~a~~~Lg~~y~~g~g~~ 211 (282)
++|..+|.+|+.. .+.+-.+.-+.+|.. .|+..+|...|++...... ....+.....|.. .
T Consensus 224 --~qA~~cy~rAI~~~p~n~~~~~ers~L~~~----~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~----~ 293 (895)
T KOG2076|consen 224 --NQARYCYSRAIQANPSNWELIYERSSLYQK----TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT----H 293 (895)
T ss_pred --HHHHHHHHHHHhcCCcchHHHHHHHHHHHH----hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH----h
Confidence 9999999999998 466777888999998 8999999999999988755 1123333444443 4
Q ss_pred ccHHHHHHHHHHHHH
Q 023425 212 ECLTKLNAKRVSAAK 226 (282)
Q Consensus 212 ~~~~~A~~~~~~a~~ 226 (282)
.+.+.|++.++.+..
T Consensus 294 ~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 294 NERERAAKALEGALS 308 (895)
T ss_pred hHHHHHHHHHHHHHh
Confidence 444677777666654
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3e-05 Score=69.21 Aligned_cols=193 Identities=13% Similarity=0.024 Sum_probs=154.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.++++.|+.+-+|+|+.+|.+..++..-|.++.+.. ..+.|+-.|+.|... -..+.+-.|-..|+..+..
T Consensus 313 ~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~----R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~---- 384 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALE----RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF---- 384 (564)
T ss_pred hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhcc----chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH----
Confidence 488999999999999999999999999999999774 448999999999865 4677777788888885555
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHH-HHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHH
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLG-TVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg-~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
.+|...-..+.+. .++.+...+| .+.+. .+.--++|.+++++++.+ ++..|-..++.++.. ++....+
T Consensus 385 kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~---dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~----Eg~~~D~ 457 (564)
T KOG1174|consen 385 KEANALANWTIRLFQNSARSLTLFGTLVLFP---DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV----EGPTKDI 457 (564)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhcceeecc---CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh----hCccchH
Confidence 8998888888775 6888888887 44433 166688999999999775 678888899998876 6777788
Q ss_pred HHHHHHHHH-----HHchhchhc--cCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhhc
Q 023425 218 NAKRVSAAK-----KARANLESN--LMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEEKRL 272 (282)
Q Consensus 218 ~~~~~~a~~-----~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~~~~ 272 (282)
+..++++.. .-|..||.. ..+.+++|..+|.+|..+. +..+..-|.+++++.+++
T Consensus 458 i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 458 IKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDES 521 (564)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCCC
Confidence 888888876 345567733 5667999999999999987 666888888888877643
No 80
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.52 E-value=2.6e-05 Score=75.32 Aligned_cols=101 Identities=11% Similarity=-0.017 Sum_probs=77.7
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..|+.++|++.+...++..+. ....++..+..+...||.+++...+-.|+-++|++++-|..++.+.... .+++.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~----~~i~q 225 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL----GNINQ 225 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc----ccHHH
Confidence 458899999999888774443 3455566666666667899999999999999999999999999998866 45699
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 023425 109 GAALLVDAANM--GDPDAQYELGCRLRV 134 (282)
Q Consensus 109 A~~~~~~Aa~~--g~~~A~~~Lg~~y~~ 134 (282)
|..+|.+|++. .+.+-.+.-..+|.+
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~ 253 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQK 253 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 99999999864 455666666666655
No 81
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.50 E-value=4.9e-05 Score=77.36 Aligned_cols=144 Identities=9% Similarity=-0.089 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCC
Q 023425 65 IPLLKTAKENFELALEAD---NSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG---DPDAQYELGCRLRVENDY 138 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~---~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~g~~~ 138 (282)
.+++++|.+.|.+..+.. ..+...+..|-..|... .+.++|.+.|+...+.| ++..+..|...|...+.
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~----G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~- 629 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA----GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD- 629 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-
Confidence 345555666655554310 12333444444444433 23455555555555543 33444455555544222
Q ss_pred cCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcc
Q 023425 139 VQSDQQAFYYIEKAVDQL---HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG---HAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~ 212 (282)
.++|+..|.+..+.| +...+..|...|.. .+++++|++.|....+.| +...+..|..+|.. .+
T Consensus 630 ---~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k----~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k----~G 698 (1060)
T PLN03218 630 ---WDFALSIYDDMKKKGVKPDEVFFSALVDVAGH----AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN----AK 698 (1060)
T ss_pred ---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CC
Confidence 255555555554443 23333444444444 455555555555555443 23444444444444 44
Q ss_pred cHHHHHHHHHHH
Q 023425 213 CLTKLNAKRVSA 224 (282)
Q Consensus 213 ~~~~A~~~~~~a 224 (282)
++++|...|+..
T Consensus 699 ~~eeA~~lf~eM 710 (1060)
T PLN03218 699 NWKKALELYEDI 710 (1060)
T ss_pred CHHHHHHHHHHH
Confidence 455555544443
No 82
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.50 E-value=5.2e-05 Score=77.19 Aligned_cols=210 Identities=13% Similarity=0.021 Sum_probs=157.9
Q ss_pred ccchHHHHHHHHHHhhhhh--HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHhcCCCCCcCH
Q 023425 30 HSRNKKAMELIAKGWSALK--EVDRVIDYCELNDRRLIPLLKTAKENFELALEAD-NSNTHARYWLSKLHLKYHVPGACK 106 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~g~~~a~~~Lg~~~~~~~~~~~~~ 106 (282)
.++.++|++++........ .-+...+......+...+++++|.+.|++..+.+ +.++..+..|-..|... .+.
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~----G~~ 630 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK----GDW 630 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc----CCH
Confidence 4667777777766543110 0111222222233444578999999999998765 45678888888888865 567
Q ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHH
Q 023425 107 AMGAALLVDAANMG---DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL---HPGALYLLGTVYLTGDCVKKDIAS 180 (282)
Q Consensus 107 ~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~g~g~~~d~~~ 180 (282)
++|+..|.+..+.| +...+..|...|...+ +.++|++.|....+.| +...+..|...|.. .+++++
T Consensus 631 deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G----~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k----~G~~ee 702 (1060)
T PLN03218 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG----DLDKAFEILQDARKQGIKLGTVSYSSLMGACSN----AKNWKK 702 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHH
Confidence 99999999998876 5567778888888744 4599999999999886 57788889999988 899999
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH-------chhc--hhccCCCHHHHHHHHH
Q 023425 181 ALWCFHRASEKG---HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA-------RANL--ESNLMNPVEKAKEQFE 248 (282)
Q Consensus 181 A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a-------~~~l--g~~~~~~~~~A~~~~~ 248 (282)
|+++|++..+.| +...+..|-..|.. .+++++|...|++....+ +..+ +....++.++|...|.
T Consensus 703 A~~lf~eM~~~g~~PdvvtyN~LI~gy~k----~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 703 ALELYEDIKSIKLRPTVSTMNALITALCE----GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999987654 57778888888877 789999999999876532 2222 3557889999999999
Q ss_pred HHHHhcc
Q 023425 249 VAAQAGC 255 (282)
Q Consensus 249 ~Aa~~g~ 255 (282)
...+.|.
T Consensus 779 ~M~k~Gi 785 (1060)
T PLN03218 779 QAKEDGI 785 (1060)
T ss_pred HHHHcCC
Confidence 9999883
No 83
>PRK11906 transcriptional regulator; Provisional
Probab=98.47 E-value=1.1e-05 Score=73.29 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=110.3
Q ss_pred CchhhHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHhcC----C-CCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 023425 63 RLIPLLKTAKENFELAL---EADNSNTHARYWLSKLHLKY----H-VPGACKAMGAALLVDAANM--GDPDAQYELGCRL 132 (282)
Q Consensus 63 ~~~~~~~~A~~~~~~a~---~~~~g~~~a~~~Lg~~~~~~----~-~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y 132 (282)
+.+.+.+.|..+|.+|+ +.+|+++.|+-.++.++... . ..+.+..+|...-++|++. +|+.|++.+|.++
T Consensus 269 ~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~ 348 (458)
T PRK11906 269 FTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLIT 348 (458)
T ss_pred cCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34567899999999999 99999999999999997744 1 2456778999999999864 6999999999987
Q ss_pred hcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHH---HHHHHHH-HHH
Q 023425 133 RVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAG---AAIAYGS-LLL 205 (282)
Q Consensus 133 ~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~---a~~~Lg~-~y~ 205 (282)
...++. +.|+.+|++|... +.+.+++..|.+... .++.++|++++++|+....-. ....+-. +|.
T Consensus 349 ~~~~~~----~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 349 GLSGQA----KVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV 419 (458)
T ss_pred Hhhcch----hhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence 664444 9999999999988 789999999998888 899999999999999986533 3444444 444
No 84
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.46 E-value=1.3e-05 Score=64.40 Aligned_cols=116 Identities=16% Similarity=0.065 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCH
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L---HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHA 194 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g---~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~ 194 (282)
..+++++|.++... .++++|+.+|++++.. + .+.++++||.+|.. .+++++|+.+|++|+.. ...
T Consensus 35 a~~~~~~g~~~~~~----g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~----~g~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 35 AFTYYRDGMSAQSE----GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS----NGEHTKALEYYFQALERNPFLP 106 (168)
T ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcH
Confidence 45566677776663 3347777777777654 2 23477788888877 78888888888887654 446
Q ss_pred HHHHHHHHHHHcCCC---CcccHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhcc---HHHHHHHHH
Q 023425 195 GAAIAYGSLLLRGVQ---VPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGC---NLGLRWLQR 264 (282)
Q Consensus 195 ~a~~~Lg~~y~~g~g---~~~~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g~---~~a~~~l~~ 264 (282)
.+..++|.+|..-.. ..++++.|..++ ++|+.+|+++....+ +....++..
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~-------------------~~a~~~~~~a~~~~p~~~~~~~~~~~~ 163 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWF-------------------DQAAEYWKQAIALAPGNYIEAQNWLKI 163 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHH-------------------HHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 667777777762100 155666666665 566677777776665 444444443
No 85
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.45 E-value=1.4e-05 Score=79.25 Aligned_cols=167 Identities=10% Similarity=-0.068 Sum_probs=117.5
Q ss_pred hcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHH
Q 023425 28 WLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 28 ~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~ 107 (282)
...|+++.|++.|.+.++..+.....+. ......+..++.++|+.++++++.-.|....+...+|.++... ++++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~----gdyd 119 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE----KRWD 119 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc----CCHH
Confidence 3488999999999999876555421111 1111222337799999999999844455555555558899865 5789
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 108 MGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 108 ~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
+|+..|+++++ +++++++..|+.+|... ...++|+..++++....-. ....++..|... + .++..+|++.|
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~----~q~~eAl~~l~~l~~~dp~-~~~~l~layL~~-~-~~~~~~AL~~~ 192 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADA----GRGGVVLKQATELAERDPT-VQNYMTLSYLNR-A-TDRNYDALQAS 192 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhc----CCHHHHHHHHHHhcccCcc-hHHHHHHHHHHH-h-cchHHHHHHHH
Confidence 99999999984 67899999998888884 4459999999999887222 222255454442 1 55665699999
Q ss_pred HHHHHc--CCHHHHHHHHHHHHc
Q 023425 186 HRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 186 ~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
+++++. ++++....+......
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~ 215 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQR 215 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHH
Confidence 999886 457777666666654
No 86
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.45 E-value=8.6e-06 Score=76.83 Aligned_cols=140 Identities=21% Similarity=0.074 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCC----cCHHH
Q 023425 33 NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPG----ACKAM 108 (282)
Q Consensus 33 ~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~----~~~~~ 108 (282)
.-.|.+.|.+|...+. .....++.+|+.+|++|++.+|+++.++-.|+.+|....... .+...
T Consensus 336 ~~~Ay~~~lrg~~~~~-------------~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~ 402 (517)
T PRK10153 336 QGAALTLFYQAHHYLN-------------SGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAA 402 (517)
T ss_pred CHHHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 4567777776654321 223556899999999999999999999999988876432221 12355
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHH
Q 023425 109 GAALLVDAAN----MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL-HPGALYLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 109 A~~~~~~Aa~----~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
+.....++.. ..++.++..+|.+... ..++++|...+++|++.+ +..++..+|.++.. .|++++|+.
T Consensus 403 a~~~~~~a~al~~~~~~~~~~~ala~~~~~----~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~ 474 (517)
T PRK10153 403 LSTELDNIVALPELNVLPRIYEILAVQALV----KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAAD 474 (517)
T ss_pred HHHHHHHhhhcccCcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHH
Confidence 5666666543 3467888889988776 345699999999999883 67888999999999 999999999
Q ss_pred HHHHHHHcCC
Q 023425 184 CFHRASEKGH 193 (282)
Q Consensus 184 ~~~~A~~~g~ 193 (282)
+|++|.....
T Consensus 475 ~~~~A~~L~P 484 (517)
T PRK10153 475 AYSTAFNLRP 484 (517)
T ss_pred HHHHHHhcCC
Confidence 9999988754
No 87
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.44 E-value=1.1e-05 Score=65.09 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--C
Q 023425 120 GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL-----HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--G 192 (282)
Q Consensus 120 g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g 192 (282)
+.+.+++++|..+.. ..++++|+.+|+++++.. .+.+++++|.+|.. .+++++|+.+|++++.. .
T Consensus 33 ~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 33 KEAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS----NGEHDKALEYYHQALELNPK 104 (172)
T ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcc
Confidence 345566666666665 333366666666666431 24567777777777 67777777777777664 4
Q ss_pred CHHHHHHHHHHHHc
Q 023425 193 HAGAAIAYGSLLLR 206 (282)
Q Consensus 193 ~~~a~~~Lg~~y~~ 206 (282)
++.++..+|.+|..
T Consensus 105 ~~~~~~~lg~~~~~ 118 (172)
T PRK02603 105 QPSALNNIAVIYHK 118 (172)
T ss_pred cHHHHHHHHHHHHH
Confidence 56677777777765
No 88
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.43 E-value=9.9e-06 Score=63.46 Aligned_cols=111 Identities=23% Similarity=0.158 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC-C----HHHHHHHHHHHhcCCCC
Q 023425 67 LLKTAKENFELALEADNSN---THARYWLSKLHLKYHVPGACKAMGAALLVDAANMG-D----PDAQYELGCRLRVENDY 138 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~---~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~----~~A~~~Lg~~y~~g~~~ 138 (282)
+..++...+++.++..|+. +.+.+.++.++... .++++|+..|+.+++.. + +.+.+.|+.++..
T Consensus 26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~----g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~---- 97 (145)
T PF09976_consen 26 DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQ----GDYDEAKAALEKALANAPDPELKPLARLRLARILLQ---- 97 (145)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----
Confidence 3677777788887777777 56677788887755 57789999999988654 2 3477888888887
Q ss_pred cCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 139 VQSDQQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
..++++|+..+...... -.+.+...+|.+|.. .+++++|+..|++|+
T Consensus 98 ~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~----~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 QGQYDEALATLQQIPDEAFKALAAELLGDIYLA----QGDYDEARAAYQKAL 145 (145)
T ss_pred cCCHHHHHHHHHhccCcchHHHHHHHHHHHHHH----CCCHHHHHHHHHHhC
Confidence 44558888888664333 346677778888888 888999988888873
No 89
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=3.8e-05 Score=64.60 Aligned_cols=129 Identities=15% Similarity=0.026 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.++-+.+..+..+++...|.+++....+|...... .++..|+..+.+++. +.+++++.-+|.+|.+-++.
T Consensus 79 ~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~----g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~---- 150 (257)
T COG5010 79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN----GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF---- 150 (257)
T ss_pred cccccchHHHHhhhhccCcccHHHHHHHHHHHHHh----cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh----
Confidence 34444555555554445555555554455554433 344666666666653 34566666666666654444
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLL 205 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~ 205 (282)
+.|..-|.+|.+. +.+....|||..|.- .+|++.|..++..+...+ +....-||+...-
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L----~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~ 213 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLL----RGDLEDAETLLLPAYLSPAADSRVRQNLALVVG 213 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 6666666666554 556666666655555 566666666666655543 3444445554443
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.39 E-value=4e-05 Score=68.78 Aligned_cols=175 Identities=14% Similarity=-0.136 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCC
Q 023425 67 LLKTAKENFELALEADNSN---THARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQS 141 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~---~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d 141 (282)
+.+.+.+.+.++....+.+ .+..+..+.++... .+.++|...++++.+ +.++.++.. +..+..-+.....
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~----g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~ 95 (355)
T cd05804 21 ERPAAAAKAAAAAQALAARATERERAHVEALSAWIA----GDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGM 95 (355)
T ss_pred CcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccC
Confidence 4666677777777665544 45566667777654 577999999999985 566666654 4343332222222
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHH
Q 023425 142 DQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 142 ~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
...+...+...... +...+...+|.++.. .+++++|+..++++++. .++.++..+|.+|.. .+++++|
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~----~g~~~eA 167 (355)
T cd05804 96 RDHVARVLPLWAPENPDYWYLLGMLAFGLEE----AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM----QGRFKEG 167 (355)
T ss_pred chhHHHHHhccCcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHH
Confidence 34444444442222 445677788889998 89999999999999886 467789999999998 8999999
Q ss_pred HHHHHHHHHH----------Hchhch--hccCCCHHHHHHHHHHHHHhc
Q 023425 218 NAKRVSAAKK----------ARANLE--SNLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 218 ~~~~~~a~~~----------a~~~lg--~~~~~~~~~A~~~~~~Aa~~g 254 (282)
..+++++... .+..++ ....+++++|+.+|+++....
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence 9999998862 222455 348899999999999987544
No 91
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.37 E-value=1.1e-05 Score=72.73 Aligned_cols=95 Identities=12% Similarity=0.011 Sum_probs=83.8
Q ss_pred cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHH
Q 023425 104 ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIA 179 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~ 179 (282)
+++++|+..|++|++ ++++.+++++|.+|... .++++|+..+.+|++. .++.+++++|.+|.. .++++
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~----g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~----lg~~~ 87 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKL----GNFTEAVADANKAIELDPSLAKAYLRKGTACMK----LEEYQ 87 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----hCCHH
Confidence 688999999999985 57899999999999984 4559999999999987 689999999999999 99999
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 180 SALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 180 ~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
+|+.+|++++.. +++.+...++.|...
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999876 578888888887543
No 92
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.37 E-value=1.1e-05 Score=67.84 Aligned_cols=118 Identities=13% Similarity=-0.065 Sum_probs=100.6
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcC
Q 023425 58 ELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVE 135 (282)
Q Consensus 58 ~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g 135 (282)
++......+|+..|+..++++....|.+++++..||.+|.+. .+.+.|-.-|.+|.+ .+.+....|||+.|.-
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~----Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L- 180 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL----GRFDEARRAYRQALELAPNEPSIANNLGMSLLL- 180 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc----cChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-
Confidence 444555567899999999999999999999999999999987 456999999999986 5799999999999987
Q ss_pred CCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 023425 136 NDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 136 ~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
..|.+.|..++..+... .+.....+|+.+.-. .+|+..|...-.+
T Consensus 181 ---~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~----~g~~~~A~~i~~~ 227 (257)
T COG5010 181 ---RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGL----QGDFREAEDIAVQ 227 (257)
T ss_pred ---cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh----cCChHHHHhhccc
Confidence 44559999999999987 477888889988776 8999988766544
No 93
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=4.8e-05 Score=72.10 Aligned_cols=164 Identities=19% Similarity=0.123 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCCcCCHH
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG---DPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+..+|....++-++ +|++|..|-.||.+..+. .+|++|.+.+ +..|+..+|..... .+|+.
T Consensus 439 ~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~-----------s~yEkawElsn~~sarA~r~~~~~~~~----~~~fs 502 (777)
T KOG1128|consen 439 QHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP-----------SLYEKAWELSNYISARAQRSLALLILS----NKDFS 502 (777)
T ss_pred ccchHHHHHHHHhc-CCCcchhHHHhhhhccCh-----------HHHHHHHHHhhhhhHHHHHhhcccccc----chhHH
Confidence 46889999999987 789999999999988754 5677776554 45677888877666 46669
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcccHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE--KGHAGAAIAYGSLLLRGVQVPECLTKLNA 219 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 219 (282)
++..+++.+.+. +....+|.+|.+... .+++..|.++|...+. .++.+++.||+..|.. .+.-.+|+.
T Consensus 503 ~~~~hle~sl~~nplq~~~wf~~G~~ALq----lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~~ 574 (777)
T KOG1128|consen 503 EADKHLERSLEINPLQLGTWFGLGCAALQ----LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR----LKKKKRAFR 574 (777)
T ss_pred HHHHHHHHHhhcCccchhHHHhccHHHHH----HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH----HhhhHHHHH
Confidence 999999999987 689999999999999 9999999999999866 5889999999999998 788888999
Q ss_pred HHHHHHHH------Hchhch--hccCCCHHHHHHHHHHHHHhc
Q 023425 220 KRVSAAKK------ARANLE--SNLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 220 ~~~~a~~~------a~~~lg--~~~~~~~~~A~~~~~~Aa~~g 254 (282)
.++.|..- .|-|-- ...-++++.|+..|.+-.+..
T Consensus 575 ~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 575 KLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99999872 222322 335668899999888877755
No 94
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.36 E-value=1.9e-05 Score=63.36 Aligned_cols=115 Identities=14% Similarity=0.103 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHhcCCCC
Q 023425 66 PLLKTAKENFELALEADNSN--THARYWLSKLHLKYHVPGACKAMGAALLVDAANM--G---DPDAQYELGCRLRVENDY 138 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~--~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g---~~~A~~~Lg~~y~~g~~~ 138 (282)
+++..+..++..-+...+.+ ..+++.+|.++... .++++|+.+|++|+.. + .+.+++++|.+|...+.
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~----g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~- 87 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSE----GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE- 87 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC-
Confidence 33444445554433333333 45567778777754 4678888888888744 3 23578888888888444
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC---CCccCHHHHHHHHHHH
Q 023425 139 VQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGD---CVKKDIASALWCFHRA 188 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~---g~~~d~~~A~~~~~~A 188 (282)
+++|+.+|++|... .++.++.++|.+|..-. ...++++.|+.++.+|
T Consensus 88 ---~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 88 ---HTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred ---HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 48888888888775 56777788887777200 0156666555555554
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.36 E-value=1.3e-05 Score=78.17 Aligned_cols=172 Identities=13% Similarity=0.006 Sum_probs=138.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.++.+.|+..|-+++..++..+.++-.||.+|... .|...|.++|.+|-+ .++.++.-.++..|.+ ..++
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~----~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae----~~~w 542 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDS----DDMKRAKKCFDKAFELDATDAEAAAASADTYAE----ESTW 542 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc----cccH
Confidence 46789999999999999999999999999999965 378999999999975 4678888889999988 7778
Q ss_pred HHHHHHHHHHHHcCC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHH
Q 023425 143 QQAFYYIEKAVDQLH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTK 216 (282)
Q Consensus 143 ~~A~~~~~kAa~~g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~ 216 (282)
+.|......+++... ...+..+|..|.+ .+++..|+.+|+-|..- .+..++..||..|.. .+.+..
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe----a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~----sGry~~ 614 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLE----AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE----SGRYSH 614 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccC----ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh----cCceeh
Confidence 999998877777633 4455668999998 99999999999999765 578899999999998 788889
Q ss_pred HHHHHHHHHH------HHchhchhc--cCCCHHHHHHHHHHHHH
Q 023425 217 LNAKRVSAAK------KARANLESN--LMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 217 A~~~~~~a~~------~a~~~lg~~--~~~~~~~A~~~~~~Aa~ 252 (282)
|.+.|.+|.. -+.|....+ ..+.+.+|+.-+.+-+.
T Consensus 615 AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 615 ALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999976 233333322 45556666665555443
No 96
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.35 E-value=1.8e-06 Score=58.38 Aligned_cols=61 Identities=30% Similarity=0.380 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCcc-CHHHHHHHHHHHHH
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKK-DIASALWCFHRASE 190 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~ 190 (282)
+..++.+|.++.. ..++++|+.+|+++++. .++.+++++|.+|.. .+ ++++|+++|++|++
T Consensus 3 a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK----LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH----TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCccHHHHHHHHHHHHH
Confidence 4445555555555 33335555555555544 345555555555555 44 45555555555543
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4.3e-05 Score=70.10 Aligned_cols=194 Identities=19% Similarity=0.126 Sum_probs=135.7
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC-CHHHHHH--------
Q 023425 57 CELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG-DPDAQYE-------- 127 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~A~~~-------- 127 (282)
..|+.....++++.|+++|.++++++ ++..-+.+.+-.|... ..+...+.....|++.| ...+.++
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~----~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLER----GKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhc----cHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44555566788999999999999998 7777777788887755 34566666666677665 3333333
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCH---------------------------HHHHHHHHHHhcCCCCccCHH
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ-LHP---------------------------GALYLLGTVYLTGDCVKKDIA 179 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-g~~---------------------------~A~~~Lg~~y~~g~g~~~d~~ 179 (282)
+|..|.. ..+++.|+.||+++... -.+ .....=|..++. .+|+.
T Consensus 304 ~g~a~~k----~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk----~gdy~ 375 (539)
T KOG0548|consen 304 LGNAYTK----REDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK----KGDYP 375 (539)
T ss_pred hhhhhhh----HHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh----ccCHH
Confidence 3444444 46779999999998662 111 111223666666 89999
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHH
Q 023425 180 SALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEV 249 (282)
Q Consensus 180 ~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~ 249 (282)
.|+..|.+|+... ++..+.|.+.||.. -.++..|+.-.+.+++ .++..-|. ...+++++|...|.+
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~k----L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLK----LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999874 68889999999998 7778888777777776 35555553 366788899999999
Q ss_pred HHHhccH--HHHHHHHHHHH
Q 023425 250 AAQAGCN--LGLRWLQRIEE 267 (282)
Q Consensus 250 Aa~~g~~--~a~~~l~~l~~ 267 (282)
+.+..+. .+...+.+...
T Consensus 452 ale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHhcCchhHHHHHHHHHHHH
Confidence 8887733 33334444443
No 98
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.34 E-value=1.7e-05 Score=63.95 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG-----DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L 156 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g 156 (282)
..+.+++.+|..+... .++++|+.+|+++++.. .+.+++++|.++...+ ++++|+.+|.+++.. .
T Consensus 33 ~~a~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 33 KEAFVYYRDGMSAQAD----GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG----EHDKALEYYHQALELNPK 104 (172)
T ss_pred hhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCcc
Confidence 4566778888887755 56788888888887432 2467888888888744 448888888888876 5
Q ss_pred CHHHHHHHHHHHhc
Q 023425 157 HPGALYLLGTVYLT 170 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~ 170 (282)
++.++..+|.+|..
T Consensus 105 ~~~~~~~lg~~~~~ 118 (172)
T PRK02603 105 QPSALNNIAVIYHK 118 (172)
T ss_pred cHHHHHHHHHHHHH
Confidence 67788888888766
No 99
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.34 E-value=2.6e-05 Score=77.06 Aligned_cols=159 Identities=12% Similarity=-0.086 Sum_probs=103.5
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
..+++++|+...+.+++..|+.+..+|.+|.++...+. ...+. ...++.+... ..++
T Consensus 43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~----~~~~~--------------lv~~l~~~~~----~~~~- 99 (906)
T PRK14720 43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRP----LNDSN--------------LLNLIDSFSQ----NLKW- 99 (906)
T ss_pred hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc----hhhhh--------------hhhhhhhccc----ccch-
Confidence 44556666666666666666666666666665543311 11110 0022222111 2233
Q ss_pred HHHHHHHHHHH-c-CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHH
Q 023425 144 QAFYYIEKAVD-Q-LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNA 219 (282)
Q Consensus 144 ~A~~~~~kAa~-~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 219 (282)
.+++++....- . .+..|++.||.||.. .++.++|...|+++++. .++.+..++|..|.. . |.++|..
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk----~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----~-dL~KA~~ 170 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAK----LNENKKLKGVWERLVKADRDNPEIVKKLATSYEE----E-DKEKAIT 170 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----h-hHHHHHH
Confidence 55666555443 3 466799999999999 99999999999999886 579999999999998 5 9999999
Q ss_pred HHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhccHHHHH
Q 023425 220 KRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNLGLR 260 (282)
Q Consensus 220 ~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g~~~a~~ 260 (282)
++.+|+.. .+..+.+..+.+++.+-++.....-..
T Consensus 171 m~~KAV~~------~i~~kq~~~~~e~W~k~~~~~~~d~d~ 205 (906)
T PRK14720 171 YLKKAIYR------FIKKKQYVGIEEIWSKLVHYNSDDFDF 205 (906)
T ss_pred HHHHHHHH------HHhhhcchHHHHHHHHHHhcCcccchH
Confidence 99999885 333445566666666666666554433
No 100
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=98.30 E-value=1.3e-06 Score=51.06 Aligned_cols=34 Identities=44% Similarity=0.586 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
.|++.||.+|..|.++++|.++|+.||++|+++|
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 4566666666666666666666666666666554
No 101
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.1e-05 Score=65.85 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
...+.-+.-.+.-+..+|+|++.|..||.+|... .+...|..-|.+|.+ ..+++...-+|.++....+ .++..
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~----~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-~~~ta 210 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMAL----GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-QQMTA 210 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CcccH
Confidence 4477778888888889999999999999999977 466999999999985 5699999999988876554 56679
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
++...|++++.. .++.+.+.||.-++. .+|+.+|+..+++-++...
T Consensus 211 ~a~~ll~~al~~D~~~iral~lLA~~afe----~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 211 KARALLRQALALDPANIRALSLLAFAAFE----QGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCC
Confidence 999999999987 689999999999999 9999999999999877654
No 102
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.24 E-value=3e-05 Score=57.75 Aligned_cols=93 Identities=22% Similarity=0.119 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CC---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C---
Q 023425 87 HARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GD---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L--- 156 (282)
Q Consensus 87 ~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g--- 156 (282)
+.++.+|..+... +++++|+..|.++++. ++ +.+++.+|.++.. ..++++|+.+|+++... +
T Consensus 3 ~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 3 EAYYDAALLVLKA----GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHCCCCCc
Confidence 3445555555543 3445555555555432 21 3455555555555 22235555555555543 1
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 157 HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.+.+++.+|.+|.. .+++++|+.++.++++.
T Consensus 75 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 75 APDALLKLGMSLQE----LGDKEKAKATLQQVIKR 105 (119)
T ss_pred ccHHHHHHHHHHHH----hCChHHHHHHHHHHHHH
Confidence 13445555555554 45555555555555443
No 103
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.23 E-value=6.5e-06 Score=58.14 Aligned_cols=79 Identities=24% Similarity=0.230 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH-HhCCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 66 PLLKTAKENFELALEADNS--NTHARYWLSKLHLKYHVPGACKAMGAALLVDA-ANMGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g--~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~A-a~~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
+++++|+.+|++.++.+|. ++..++.||.+|... +++++|+.++++. ....+++..+.+|.++.. ..++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~----~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~----l~~y 74 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ----GKYEEAIELLQKLKLDPSNPDIHYLLARCLLK----LGKY 74 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT----THHHHHHHHHHCHTHHHCHHHHHHHHHHHHHH----TT-H
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC----CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCH
Confidence 4577777777777776664 344555567777755 4567777777662 133455666666776666 3333
Q ss_pred HHHHHHHHHH
Q 023425 143 QQAFYYIEKA 152 (282)
Q Consensus 143 ~~A~~~~~kA 152 (282)
++|+..|++|
T Consensus 75 ~eAi~~l~~~ 84 (84)
T PF12895_consen 75 EEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 6776666654
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.22 E-value=0.00022 Score=70.65 Aligned_cols=61 Identities=20% Similarity=0.099 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 121 DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 121 ~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
+..|++.||.+|...+.. ++|...|+++++. .++.++.++|..|.. . |+++|++++.+|+.
T Consensus 115 ~k~Al~~LA~~Ydk~g~~----~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 115 NKLALRTLAEAYAKLNEN----KKLKGVWERLVKADRDNPEIVKKLATSYEE----E-DKEKAITYLKKAIY 177 (906)
T ss_pred hhHHHHHHHHHHHHcCCh----HHHHHHHHHHHhcCcccHHHHHHHHHHHHH----h-hHHHHHHHHHHHHH
Confidence 344666666666653333 6666666666655 456666666666665 4 66666666666654
No 105
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.22 E-value=3.6e-05 Score=57.33 Aligned_cols=83 Identities=19% Similarity=0.259 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CC---CHHHHHHHHHHHhcCC
Q 023425 65 IPLLKTAKENFELALEADNSN---THARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MG---DPDAQYELGCRLRVEN 136 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~---~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g---~~~A~~~Lg~~y~~g~ 136 (282)
.+++++|+..|+++++..|++ +.+++.+|.++... .+++.|+.+|+++.. ++ .+.+++.+|.++..
T Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-- 88 (119)
T TIGR02795 15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ----GKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-- 88 (119)
T ss_pred cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH--
Confidence 344444444444444444433 33444444444433 233444444444442 12 13444444444444
Q ss_pred CCcCCHHHHHHHHHHHHHc
Q 023425 137 DYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~ 155 (282)
..++++|+.+|.++.+.
T Consensus 89 --~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 89 --LGDKEKAKATLQQVIKR 105 (119)
T ss_pred --hCChHHHHHHHHHHHHH
Confidence 22234444444444443
No 106
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.22 E-value=7.4e-06 Score=55.34 Aligned_cols=62 Identities=24% Similarity=0.269 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcc-cHHHHHHHHHHHHH
Q 023425 157 HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPE-CLTKLNAKRVSAAK 226 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~ 226 (282)
++..++.+|.++.. .+++++|+.+|++|++. .++.+++++|.+|.. .+ ++++|+.+++++++
T Consensus 2 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK----LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH----TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCccHHHHHHHHHHHHH
Confidence 57889999999999 99999999999999886 568899999999998 55 67776666666643
No 107
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=98.21 E-value=2.2e-06 Score=51.13 Aligned_cols=36 Identities=39% Similarity=0.632 Sum_probs=21.7
Q ss_pred HHHHHHHH--HHHhcCC-CCccCHHHHHHHHHHHHHcCC
Q 023425 158 PGALYLLG--TVYLTGD-CVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 158 ~~A~~~Lg--~~y~~g~-g~~~d~~~A~~~~~~A~~~g~ 193 (282)
|+|++.|| .+|..|. ++++|.++|++||++|++.|+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 35666666 5556665 566666666666666666553
No 108
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.20 E-value=0.00029 Score=67.27 Aligned_cols=105 Identities=23% Similarity=0.171 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcccHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE--KGHAGAAIAYGSLLLRGVQVPECLTKLNA 219 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 219 (282)
+|..++.+|... -.+..++..|.++.. .+...+|.+.|.-|.. .+++.++..||.++..+. .+.......
T Consensus 668 ~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~----~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G--~~~la~~~~ 741 (799)
T KOG4162|consen 668 EARSCLLEASKIDPLSASVYYLRGLLLEV----KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG--SPRLAEKRS 741 (799)
T ss_pred HHHHHHHHHHhcchhhHHHHHHhhHHHHH----HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CcchHHHHH
Confidence 344444444433 234445666777766 8999999999998854 578999999999999854 333333444
Q ss_pred HHHHHHH------HHchhchhc--cCCCHHHHHHHHHHHHHhc
Q 023425 220 KRVSAAK------KARANLESN--LMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 220 ~~~~a~~------~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g 254 (282)
....+++ .+|+.+|.+ ..||.++|.++|.-|+++-
T Consensus 742 ~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 742 LLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 7777876 699999955 7789999999999998765
No 109
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.20 E-value=2.2e-05 Score=54.60 Aligned_cols=89 Identities=22% Similarity=0.220 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 023425 89 RYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLL 164 (282)
Q Consensus 89 ~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~L 164 (282)
++.+|.++... .++++|+.+++++++. .++.+++.+|.++.. ..++++|+.+|+++... .++.+++.+
T Consensus 3 ~~~~a~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKL----GDYDEALEYYEKALELDPDNADAYYNLAAAYYK----LGKYEEALEDYEKALELDPDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHH----hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 44445544443 3345555555555432 233444455555444 22235555555554443 233444445
Q ss_pred HHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 165 GTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 165 g~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
|.++.. .+++++|..++.++.
T Consensus 75 ~~~~~~----~~~~~~a~~~~~~~~ 95 (100)
T cd00189 75 GLAYYK----LGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHH----HHhHHHHHHHHHHHH
Confidence 555444 444555555544443
No 110
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.19 E-value=2.7e-05 Score=54.12 Aligned_cols=81 Identities=26% Similarity=0.229 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++..|.++.+++.+|.++... .++++|+.+|+++++. .++.+++.+|.++.. ..++
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 84 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL----GKYEEALEDYEKALELDPDNAKAYYNLGLAYYK----LGKY 84 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH----HHhH
Confidence 34455555555555544444444555555554433 2334555555554432 233444445544444 2223
Q ss_pred HHHHHHHHHHH
Q 023425 143 QQAFYYIEKAV 153 (282)
Q Consensus 143 ~~A~~~~~kAa 153 (282)
++|..++.++.
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 44555444443
No 111
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00063 Score=60.99 Aligned_cols=196 Identities=15% Similarity=0.013 Sum_probs=146.2
Q ss_pred CCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcC
Q 023425 61 DRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQ 140 (282)
Q Consensus 61 ~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~ 140 (282)
-....++..+|+..|+++.-++|...+++-.+|.++...++.++ ..++-.+..++..-...-++.-|.++.+ .+
T Consensus 241 ~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~--~~~L~~~Lf~~~~~ta~~wfV~~~~l~~----~K 314 (564)
T KOG1174|consen 241 CLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ--DSALMDYLFAKVKYTASHWFVHAQLLYD----EK 314 (564)
T ss_pred hhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh--HHHHHHHHHhhhhcchhhhhhhhhhhhh----hh
Confidence 34445789999999999999999999999999999887665533 4455556666665566667777777776 67
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcccHHH
Q 023425 141 SDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPECLTK 216 (282)
Q Consensus 141 d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~ 216 (282)
++..|+.+-+|+++. .+.+|+..-|..+.. .+++++|+..|+.|.... .-+.+-.|-.+|.- .+.+.+
T Consensus 315 ~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~----~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA----~~~~kE 386 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPRNHEALILKGRLLIA----LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA----QKRFKE 386 (564)
T ss_pred hHHHHHHHHHHHhccCcccchHHHhccHHHHh----ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh----hchHHH
Confidence 779999999999987 689999999999999 999999999999997765 46677778888887 455555
Q ss_pred HHHHHHHHHH------HHchhchhc----cCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHh
Q 023425 217 LNAKRVSAAK------KARANLESN----LMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEEK 270 (282)
Q Consensus 217 A~~~~~~a~~------~a~~~lg~~----~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~~ 270 (282)
|...-+.+.. ++..-+|.. .+.--++|..+++++..+. +..|...++++..-+.
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence 5444443333 233345521 3344688999999998754 6778778887776543
No 112
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.0003 Score=64.64 Aligned_cols=127 Identities=14% Similarity=0.027 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHH
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~ 144 (282)
+.+++.+..+....++|.-+...-.=|.-++.. +|+.+|+..|.+|++ +.++..+.|.+.+|..-+.+ ..
T Consensus 339 ~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~----gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~----~~ 410 (539)
T KOG0548|consen 339 EAEKALKEAERKAYINPEKAEEEREKGNEAFKK----GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY----PE 410 (539)
T ss_pred HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH----HH
Confidence 345555555554445444444444445554433 456666666666663 45666666666666663333 66
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC--HHHHHHHHHHHH
Q 023425 145 AFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH--AGAAIAYGSLLL 205 (282)
Q Consensus 145 A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~--~~a~~~Lg~~y~ 205 (282)
|+.-.+++++. .+..++++=|.++.. .+++++|++.|+++.+.+. .++.-.+..|+.
T Consensus 411 aL~Da~~~ieL~p~~~kgy~RKg~al~~----mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 411 ALKDAKKCIELDPNFIKAYLRKGAALRA----MKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 66666666665 455666666666666 6666666666666665542 333334444444
No 113
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=98.13 E-value=5.2e-06 Score=48.45 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC
Q 023425 123 DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL 156 (282)
Q Consensus 123 ~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g 156 (282)
+|++.||.+|..|.++++|..+|+.||++|++.|
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 4555555555555555555555555555555554
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=3.9e-05 Score=72.69 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=109.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Q 023425 37 MELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDA 116 (282)
Q Consensus 37 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~A 116 (282)
..++.++|...+.......+..+......++++++.++++.+++++|..+..||.+|.+..+. .+...|...|.+.
T Consensus 470 ~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql----ek~q~av~aF~rc 545 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL----EKEQAAVKAFHRC 545 (777)
T ss_pred hHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH----hhhHHHHHHHHHH
Confidence 345555555444444444555555555568999999999999999999999999999999876 5679999999998
Q ss_pred H--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 117 A--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 117 a--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
. ++++.+++.||+..|.. .++.++|...+++|.+- ++..-+-|--.+-.+ .+.+++|++.|++-++
T Consensus 546 vtL~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd----vge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD----VGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcCCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh----cccHHHHHHHHHHHHH
Confidence 7 78999999999999998 44448999999999876 455555454444445 6788899988888755
No 115
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.13 E-value=0.00015 Score=71.35 Aligned_cols=167 Identities=12% Similarity=-0.096 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCCcCCH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG---DPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
+++++|.+.|+.. .+.+..+|..|...|... .+.++|+..|++..+.| +...+..+...+...+..
T Consensus 273 g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~----g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~---- 341 (697)
T PLN03081 273 GDIEDARCVFDGM---PEKTTVAWNSMLAGYALH----GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL---- 341 (697)
T ss_pred CCHHHHHHHHHhC---CCCChhHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch----
Confidence 4556666666544 233555555555555544 33466666666655443 344555555555553333
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHH
Q 023425 143 QQAFYYIEKAVDQL---HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNA 219 (282)
Q Consensus 143 ~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 219 (282)
++|.+.+....+.| +...+..|..+|.. .+++++|...|++..+ .+..++..|...|.. .++.++|+.
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k----~G~~~~A~~vf~~m~~-~d~~t~n~lI~~y~~----~G~~~~A~~ 412 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSK----WGRMEDARNVFDRMPR-KNLISWNALIAGYGN----HGRGTKAVE 412 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHH----CCCHHHHHHHHHhCCC-CCeeeHHHHHHHHHH----cCCHHHHHH
Confidence 56666666665554 33445555566655 5666666666665443 344455555555555 556666666
Q ss_pred HHHHHHHHHc-------hhc--hhccCCCHHHHHHHHHHHHH
Q 023425 220 KRVSAAKKAR-------ANL--ESNLMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 220 ~~~~a~~~a~-------~~l--g~~~~~~~~~A~~~~~~Aa~ 252 (282)
.|++....+. ..+ +....++.++|.++|+...+
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 6666554211 111 13356666667776666654
No 116
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.13 E-value=7e-05 Score=70.33 Aligned_cols=180 Identities=14% Similarity=0.044 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
++.++|+++++.+++.-|..+.-+..+|.+++.- .+.+.|...|....+ ++.+.-+..|+.+-...+.. -
T Consensus 665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~----~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~----~ 736 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQM----ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL----V 736 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHH----HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch----h
Confidence 3355555555555555555555555555555533 233444444444443 24444444454444332222 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 023425 144 QAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVS 223 (282)
Q Consensus 144 ~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 223 (282)
+|...+.++--.+-..+.+.|..+-.+- ..++.++|.....+|++.=...+...-..+.+.+. ++.-.+++..+++
T Consensus 737 rAR~ildrarlkNPk~~~lwle~Ir~El--R~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~--~~rkTks~DALkk 812 (913)
T KOG0495|consen 737 RARSILDRARLKNPKNALLWLESIRMEL--RAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPR--PQRKTKSIDALKK 812 (913)
T ss_pred hHHHHHHHHHhcCCCcchhHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccC--cccchHHHHHHHh
Confidence 5555555544443333333333322210 13445555555555554433333333333333322 1222333333333
Q ss_pred HHHHHchhc--h--hccCCCHHHHHHHHHHHHHhccHH
Q 023425 224 AAKKARANL--E--SNLMNPVEKAKEQFEVAAQAGCNL 257 (282)
Q Consensus 224 a~~~a~~~l--g--~~~~~~~~~A~~~~~~Aa~~g~~~ 257 (282)
.-...|..+ + ......+++|+.||.+|++.++..
T Consensus 813 ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 813 CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 332222222 2 226678899999999999877444
No 117
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.10 E-value=0.00018 Score=70.47 Aligned_cols=178 Identities=13% Similarity=-0.008 Sum_probs=130.7
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Q 023425 32 RNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAA 111 (282)
Q Consensus 32 ~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~ 111 (282)
+.+.|+..+-++++........+. ..|..+.-.-|...|.+.|++|-++|+++.++.-.+...|... .+.+.|..
T Consensus 473 ~~~~al~ali~alrld~~~apaf~-~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~----~~we~a~~ 547 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFA-FLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEE----STWEEAFE 547 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc----ccHHHHHH
Confidence 355566666666554333222211 1122222223788899999999999999999999999999865 67899999
Q ss_pred HHHHHHhCCCH----HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 112 LLVDAANMGDP----DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 112 ~~~~Aa~~g~~----~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
....+.+.... +.+...|..|.+ +++...|+.+|+-|.+. .+..++..||..|.. .+.+.-|++.|
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLe----a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~----sGry~~AlKvF 619 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLE----AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE----SGRYSHALKVF 619 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccC----ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh----cCceehHHHhh
Confidence 88888765433 445557888887 66679999999999887 789999999999999 89999999999
Q ss_pred HHHHHcC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 186 HRASEKG--HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 186 ~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.||.... +..+.|..+.+.-. .+.+..|+.-+..-+.
T Consensus 620 ~kAs~LrP~s~y~~fk~A~~ecd----~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 620 TKASLLRPLSKYGRFKEAVMECD----NGKYKEALDALGLIIY 658 (1238)
T ss_pred hhhHhcCcHhHHHHHHHHHHHHH----hhhHHHHHHHHHHHHH
Confidence 9997765 46677777777665 5556666665555543
No 118
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=2.2e-05 Score=67.34 Aligned_cols=103 Identities=17% Similarity=-0.023 Sum_probs=84.6
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhc
Q 023425 57 CELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRV 134 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~ 134 (282)
+.|+.....++|.+|+..|.+||+++|.++.-+-+-+-.|... ..++.|++-.+.|+. +.+..|+..||..|..
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L----g~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL----GEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh----cchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 4445555567799999999999999999999999999999877 355999999999985 4578999999999999
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 023425 135 ENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTV 167 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~ 167 (282)
.+.+ .+|++.|+||++. .+.....+|...
T Consensus 162 ~gk~----~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 162 LGKY----EEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred cCcH----HHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 7777 9999999999998 456555555554
No 119
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.09 E-value=0.00013 Score=71.73 Aligned_cols=112 Identities=11% Similarity=-0.056 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCCcCC
Q 023425 66 PLLKTAKENFELALEAD-NSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG---DPDAQYELGCRLRVENDYVQS 141 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~-~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~g~~~~~d 141 (282)
+++++|+..|++..+.. ..+...+..+...+... .+.++|.+.+....+.| +...+..|..+|...+.+
T Consensus 304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~----g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~--- 376 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL----ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM--- 376 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH---
Confidence 44555655555554321 12334444444444433 23345555555554443 233444444444442222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 142 DQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 142 ~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
++|...|.+..+ .+..++..|...|.. .++.++|++.|++..+
T Consensus 377 -~~A~~vf~~m~~-~d~~t~n~lI~~y~~----~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 377 -EDARNVFDRMPR-KNLISWNALIAGYGN----HGRGTKAVEMFERMIA 419 (697)
T ss_pred -HHHHHHHHhCCC-CCeeeHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 444444444322 233344444444443 3444444444444433
No 120
>PRK11906 transcriptional regulator; Provisional
Probab=98.07 E-value=0.00026 Score=64.64 Aligned_cols=164 Identities=9% Similarity=0.011 Sum_probs=124.9
Q ss_pred CCCCH---HHH----HHHHHHHhcCCCCCcCHHHHHHHHHHHH-----hCCCHHHHHHHHHHHhcC----C-CCcCCHHH
Q 023425 82 DNSNT---HAR----YWLSKLHLKYHVPGACKAMGAALLVDAA-----NMGDPDAQYELGCRLRVE----N-DYVQSDQQ 144 (282)
Q Consensus 82 ~~g~~---~a~----~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa-----~~g~~~A~~~Lg~~y~~g----~-~~~~d~~~ 144 (282)
.|++. ++| |..|...... +.+.+.+.|..+|.+|+ +++++.|+..++.++... . ..+.+..+
T Consensus 244 ~~~~l~~~~a~~~d~ylrg~~~~~~-~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~ 322 (458)
T PRK11906 244 AKQDQGYKNHYLSDEMLAGKKELYD-FTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQK 322 (458)
T ss_pred CCCCcccccchhhHHHHHHHHHhhc-cCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 35555 555 5556555433 34567899999999998 457899999999887643 2 34556789
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHH
Q 023425 145 AFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAK 220 (282)
Q Consensus 145 A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 220 (282)
|...-++|.+. +++.|.+.+|.+... .++++.|..+|++|... +.+.+++..|..... .++.+.|..+
T Consensus 323 a~~~A~rAveld~~Da~a~~~~g~~~~~----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~ 394 (458)
T PRK11906 323 ALELLDYVSDITTVDGKILAIMGLITGL----SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh----hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 99999999998 689999999998877 78899999999999776 568899999998887 7889999999
Q ss_pred HHHHHHHHchh---------chhccCCCHHHHHHHHHHHHHhc
Q 023425 221 RVSAAKKARAN---------LESNLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 221 ~~~a~~~a~~~---------lg~~~~~~~~~A~~~~~~Aa~~g 254 (282)
.++|.+..=.. +...++...+.|+.+|-|--+.-
T Consensus 395 i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESE 437 (458)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccccc
Confidence 99998732222 22346677778888776655443
No 121
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.04 E-value=2.3e-05 Score=55.32 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHhCC----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCH
Q 023425 105 CKAMGAALLVDAANMG----DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDI 178 (282)
Q Consensus 105 ~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~ 178 (282)
+++.|+.+|++.++.. +...++.||.+|+. ..++++|+.++++ ... .++...+.+|.++.. .+++
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~----l~~y 74 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK----LGKY 74 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH----TT-H
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH----hCCH
Confidence 4555666666655321 23344445655555 2333556665555 221 344555555555555 5556
Q ss_pred HHHHHHHHHH
Q 023425 179 ASALWCFHRA 188 (282)
Q Consensus 179 ~~A~~~~~~A 188 (282)
++|+..|++|
T Consensus 75 ~eAi~~l~~~ 84 (84)
T PF12895_consen 75 EEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 6665555543
No 122
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=2.6e-05 Score=66.87 Aligned_cols=130 Identities=15% Similarity=0.006 Sum_probs=92.3
Q ss_pred chhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC
Q 023425 22 NQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV 101 (282)
Q Consensus 22 ~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~ 101 (282)
+++..-...++|.+|++.|.++|. +.+...+++=+....+...+.++.|++-.+.|+..||.+..+|-.||..|...
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~-l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~-- 162 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIE-LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL-- 162 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc--
Confidence 344444557789999999999997 44444444444444555567799999999999999999999999999999977
Q ss_pred CCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC
Q 023425 102 PGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLH 157 (282)
Q Consensus 102 ~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~ 157 (282)
.++++|++.|++|++ +.+.....+|...-..-.. +++...+..-+.-+...|.
T Consensus 163 --gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e-~~~~~~~~~~~d~~~~ig~ 217 (304)
T KOG0553|consen 163 --GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE-PKSSAQASGSFDMAGLIGA 217 (304)
T ss_pred --CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC-CCcccccccchhhhhhccC
Confidence 466999999999985 5677777777655332211 2223444455555555555
No 123
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.03 E-value=0.00015 Score=54.76 Aligned_cols=92 Identities=21% Similarity=0.152 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C---
Q 023425 87 HARYWLSKLHLKYHVPGACKAMGAALLVDAANMGD-----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L--- 156 (282)
Q Consensus 87 ~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g--- 156 (282)
.+.|+++.++... .+.++|+.+|++|+..|- ..+...||..+..-++. ++|+.+++++... +
T Consensus 2 ~~~~~~A~a~d~~----G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~----deA~~~L~~~~~~~p~~~~ 73 (120)
T PF12688_consen 2 RALYELAWAHDSL----GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRY----DEALALLEEALEEFPDDEL 73 (120)
T ss_pred chHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHCCCccc
Confidence 4566667666644 345777777777776542 34666677777765555 7777777777654 2
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 157 HPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
+......++.++.. .+++++|+.++..++.
T Consensus 74 ~~~l~~f~Al~L~~----~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 NAALRVFLALALYN----LGRPKEALEWLLEALA 103 (120)
T ss_pred cHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 44555556666666 6777777777776654
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00055 Score=57.61 Aligned_cols=145 Identities=12% Similarity=0.005 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC--CHHHHH-HHHHHHhcCCCCcCCHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG--DPDAQY-ELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~-~Lg~~y~~g~~~~~d~~~ 144 (282)
.+-|..++++.-.--||++...-.-|..+.-. ..+++|+++|..-++.+ |.-.+- .++.+--.|.. -+
T Consensus 68 ~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~----~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~-----l~ 138 (289)
T KOG3060|consen 68 DDLAQKCINQLRDRFPGSKRVGKLKAMLLEAT----GNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN-----LE 138 (289)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh----hchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc-----HH
Confidence 56677777776555577777777777777643 46688888888877543 222222 24554444444 36
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHH
Q 023425 145 AFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAK 220 (282)
Q Consensus 145 A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 220 (282)
|++-+..-.+. ++++|+..|+.+|.. .+++++|..|++.-+=. -++.-+-.||.+++.-.| ..|++.|.+|
T Consensus 139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg-~eN~~~arky 213 (289)
T KOG3060|consen 139 AIKELNEYLDKFMNDQEAWHELAEIYLS----EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG-AENLELARKY 213 (289)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 77766666665 788888888888888 88888888888886443 346666677777765333 6778888888
Q ss_pred HHHHHH
Q 023425 221 RVSAAK 226 (282)
Q Consensus 221 ~~~a~~ 226 (282)
|.+|++
T Consensus 214 y~~alk 219 (289)
T KOG3060|consen 214 YERALK 219 (289)
T ss_pred HHHHHH
Confidence 888877
No 125
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.01 E-value=1e-05 Score=53.99 Aligned_cols=50 Identities=24% Similarity=0.227 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM 119 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~ 119 (282)
+++++|+..|+++++.+|+++.+++.||.++... +++++|+.+|+++++.
T Consensus 11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~----g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ----GRYDEALAYYERALEL 60 (65)
T ss_dssp THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Confidence 5599999999999999999999999999999966 5779999999999753
No 126
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=98.01 E-value=9.6e-06 Score=48.26 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=16.4
Q ss_pred HHHHHHH--HHHhcCC-CCcCCHHHHHHHHHHHHHcC
Q 023425 123 DAQYELG--CRLRVEN-DYVQSDQQAFYYIEKAVDQL 156 (282)
Q Consensus 123 ~A~~~Lg--~~y~~g~-~~~~d~~~A~~~~~kAa~~g 156 (282)
+|++.|| .+|..|. ++++|.++|+.||++|++.|
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 4445555 4444444 34445555555555555444
No 127
>PRK15331 chaperone protein SicA; Provisional
Probab=98.00 E-value=7.5e-05 Score=59.04 Aligned_cols=82 Identities=15% Similarity=-0.015 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|...|+-.+-.++.+++-+..||-++... +++++|+..|-.|+ ..++|...+..|.+|+. ..+..
T Consensus 51 Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~----k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~----l~~~~ 122 (165)
T PRK15331 51 GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLK----KQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL----MRKAA 122 (165)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcccCCCCccchHHHHHHH----hCCHH
Confidence 4466666666666666666666666666666533 45566666666664 34566666666666665 33336
Q ss_pred HHHHHHHHHHHc
Q 023425 144 QAFYYIEKAVDQ 155 (282)
Q Consensus 144 ~A~~~~~kAa~~ 155 (282)
.|..+|..+++.
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 666666666553
No 128
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.99 E-value=0.00028 Score=53.34 Aligned_cols=93 Identities=18% Similarity=0.074 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--C--
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLH-----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--G-- 192 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~-----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g-- 192 (282)
|.+.|.+|.++..-+.. ++|+.+|++|...|- ..+.+.+|..|.. .|++++|+.++++++.. +
T Consensus 1 ~~~~~~~A~a~d~~G~~----~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~----LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 1 PRALYELAWAHDSLGRE----EEAIPLYRRALAAGLSGADRRRALIQLASTLRN----LGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred CchHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcc
Confidence 35788899988885555 999999999999752 5678889999999 99999999999999875 2
Q ss_pred -CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 193 -HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 193 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+......++.++.. .++.++|+.++..+..
T Consensus 73 ~~~~l~~f~Al~L~~----~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LNAALRVFLALALYN----LGRPKEALEWLLEALA 103 (120)
T ss_pred ccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 44556667777776 6778878777776654
No 129
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.99 E-value=7.8e-05 Score=64.33 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=79.3
Q ss_pred CCCCHHHHHHHHHHH-hcCCCCCcCHHHHHHHHHHHHh--CCC---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 82 DNSNTHARYWLSKLH-LKYHVPGACKAMGAALLVDAAN--MGD---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 82 ~~g~~~a~~~Lg~~~-~~~~~~~~~~~~A~~~~~~Aa~--~g~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
.+++....|..+.-+ ... +++++|+..|+..++ +++ +.+++.||.+|+. ..++++|+.+|++.++.
T Consensus 138 ~~~~e~~~Y~~A~~l~~~~----~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~~~f~~vv~~ 209 (263)
T PRK10803 138 QSGDANTDYNAAIALVQDK----SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAAYYFASVVKN 209 (263)
T ss_pred CCCCHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 345677777777755 322 578999999999985 444 6899999999998 55569999999999975
Q ss_pred -----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 156 -----LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 156 -----g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
..+++++.+|.+|.. .+++++|+..|++.++.-
T Consensus 210 yP~s~~~~dAl~klg~~~~~----~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 210 YPKSPKAADAMFKVGVIMQD----KGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CCCCcchhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHC
Confidence 368999999999988 899999999999988763
No 130
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.98 E-value=2.6e-05 Score=54.02 Aligned_cols=59 Identities=29% Similarity=0.310 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C-----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 123 DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----L-----HPGALYLLGTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 123 ~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g-----~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
.++.++|.+|.. ..++++|+.+|++|.+. | .+.++++||.+|.. .+++++|+.+|++|+
T Consensus 6 ~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 345555555555 23335555555555532 1 13445555666555 555666666666554
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.00012 Score=61.51 Aligned_cols=160 Identities=19% Similarity=0.103 Sum_probs=111.2
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHhcCCCCCcCHHHH
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYW-LSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~-Lg~~~~~~~~~~~~~~~A 109 (282)
++.+-|...+.+--..+++..+ +....+.-....+++++|+++|...++-||.|...+-. ++.+...|. + -+|
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~R-V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK----~-l~a 139 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKR-VGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK----N-LEA 139 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC----c-HHH
Confidence 4456666655553333433332 33333334455677999999999999888888777664 566666552 2 377
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
++-+..-.+ ++|++|+..|+.+|+. ..++.+|..+|+...-. -++-.+-.+|.+++.-.| ..+..-|.+||
T Consensus 140 Ik~ln~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg-~eN~~~arkyy 214 (289)
T KOG3060|consen 140 IKELNEYLDKFMNDQEAWHELAEIYLS----EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG-AENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence 777766665 5899999999999998 55569999999998766 466677789988776434 77889999999
Q ss_pred HHHHHcCC--HHHHHHHH
Q 023425 186 HRASEKGH--AGAAIAYG 201 (282)
Q Consensus 186 ~~A~~~g~--~~a~~~Lg 201 (282)
.+|++... ..+++.+-
T Consensus 215 ~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 215 ERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHhChHhHHHHHHHH
Confidence 99998754 44444443
No 132
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00018 Score=64.31 Aligned_cols=230 Identities=14% Similarity=0.029 Sum_probs=142.8
Q ss_pred hhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCC
Q 023425 24 HQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPG 103 (282)
Q Consensus 24 ~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~ 103 (282)
+.+.....+|.+|+..+..+++..+.. ...+......+...++++.|...+++.++.+|+.+.++...+.++...
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~---- 130 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL---- 130 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh----
Confidence 444555778999999999988877654 222222222233346699999999999999999999999998887644
Q ss_pred cCHHHHHHHHHHH---------------H---------------------------------------hCCCHHHHHHHH
Q 023425 104 ACKAMGAALLVDA---------------A---------------------------------------NMGDPDAQYELG 129 (282)
Q Consensus 104 ~~~~~A~~~~~~A---------------a---------------------------------------~~g~~~A~~~Lg 129 (282)
.+..+|...|+-. + +..+.+|.+.-|
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg 210 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRG 210 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcc
Confidence 2223333332211 1 112233333334
Q ss_pred HHHhcCCCCcCCHHHHHHHHHHHHHcCC--H------------HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC---
Q 023425 130 CRLRVENDYVQSDQQAFYYIEKAVDQLH--P------------GALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--- 192 (282)
Q Consensus 130 ~~y~~g~~~~~d~~~A~~~~~kAa~~g~--~------------~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--- 192 (282)
.++.. ..+.++|+..|+++.+.+- . ..+-.-|...+. .+++.+|.++|..|+..+
T Consensus 211 ~~~yy----~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk----~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 211 LCLYY----NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK----NGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred ccccc----ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh----ccchhHHHHHHHHhhcCCccc
Confidence 44333 4556889999999888731 1 111222333333 788889999999987754
Q ss_pred ---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhch--hccCCCHHHHHHHHHHHHHhc-cHHHHH
Q 023425 193 ---HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLE--SNLMNPVEKAKEQFEVAAQAG-CNLGLR 260 (282)
Q Consensus 193 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg--~~~~~~~~~A~~~~~~Aa~~g-~~~a~~ 260 (282)
++..+.+.+.+... .++..+|+.-++.|+. .++..-| .+...+.+.|++.|++|.+.. +..-..
T Consensus 283 ~~~naklY~nra~v~~r----Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~ 358 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIR----LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRR 358 (486)
T ss_pred cchhHHHHHHhHhhhcc----cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHH
Confidence 24456666666666 6777778877777776 2333333 346678899999999999876 333444
Q ss_pred HHHHHHHHHh
Q 023425 261 WLQRIEEEEK 270 (282)
Q Consensus 261 ~l~~l~~~~~ 270 (282)
.|.+....++
T Consensus 359 ~l~~A~~aLk 368 (486)
T KOG0550|consen 359 TLREAQLALK 368 (486)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 133
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.94 E-value=3.8e-05 Score=53.18 Aligned_cols=61 Identities=20% Similarity=0.110 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----C-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----G-----HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+.++.+||.+|.. .+++++|+.+|++|++. | .+.++++||.+|.. .+++++|..+++++.+
T Consensus 5 a~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 4578899999999 99999999999999763 3 25579999999998 7888888887777654
No 134
>PRK15331 chaperone protein SicA; Provisional
Probab=97.94 E-value=0.00017 Score=57.09 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPG 159 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~ 159 (282)
+.-+..|..|.-++.. +++++|...|+-.+ +..+++-+..||.++.. .+++++|+..|..|+.. ++|.
T Consensus 35 ~~le~iY~~Ay~~y~~----Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~----~k~y~~Ai~~Y~~A~~l~~~dp~ 106 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQ----GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL----KKQFQKACDLYAVAFTLLKNDYR 106 (165)
T ss_pred HHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcccCCCC
Confidence 3445566666655544 46799999999887 55678888888899888 66679999999999876 7899
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 160 ALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 160 A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
..+.+|.||+. .++...|+.+|+.++++-.
T Consensus 107 p~f~agqC~l~----l~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 107 PVFFTGQCQLL----MRKAAKARQCFELVNERTE 136 (165)
T ss_pred ccchHHHHHHH----hCCHHHHHHHHHHHHhCcc
Confidence 99999999999 9999999999999998644
No 135
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.93 E-value=0.00045 Score=65.31 Aligned_cols=137 Identities=12% Similarity=-0.053 Sum_probs=99.7
Q ss_pred cCCCCHHHHHH--HHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCc----CCHHHHHHHHHHH
Q 023425 81 ADNSNTHARYW--LSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYV----QSDQQAFYYIEKA 152 (282)
Q Consensus 81 ~~~g~~~a~~~--Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~----~d~~~A~~~~~kA 152 (282)
..|.+++|+-. -|.-|... ....+...|+.+|++|+ +++++.|+-.|+.+|....... .+...+.....++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~-~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNS-GDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34566666543 34444433 23466889999999998 4789999998888775432221 1245667777775
Q ss_pred HHc----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 153 VDQ----LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG-HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 153 a~~----g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
... ..+.++..+|.+... .+++++|...|++|++.. +..++..+|.++.. .++.++|+.+|++|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~----~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALV----KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFN 481 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 553 456888889988887 799999999999998865 57789999999998 7888887777777765
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.92 E-value=0.00024 Score=55.53 Aligned_cols=134 Identities=21% Similarity=0.070 Sum_probs=90.9
Q ss_pred hhhhhhhhhHHhhhhhhhcchhhhhhcccchHHHHHHHHHHhhhhhHH--HHHHHHHhhcCCCchhhHHHHHHHHHHHHH
Q 023425 3 RQISKASTLKSAALGLLQSNQHQKRWLHSRNKKAMELIAKGWSALKEV--DRVIDYCELNDRRLIPLLKTAKENFELALE 80 (282)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 80 (282)
.+...|+.++...+..+..+. ...+.+.+.+-+...+.. .....+.........+++++|...|+.+++
T Consensus 6 ~~~~~a~~~y~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 6 QQAEQASALYEQALQALQAGD---------PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 456677777777776664333 344444444433333322 223344444445556889999999999997
Q ss_pred cCCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHH
Q 023425 81 ADNSN---THARYWLSKLHLKYHVPGACKAMGAALLVDAANM-GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAV 153 (282)
Q Consensus 81 ~~~g~---~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa 153 (282)
..|+. +.+.+.|+.++... .++++|+..+...... -.+.+...+|.+|...+. .++|+..|++|+
T Consensus 77 ~~~d~~l~~~a~l~LA~~~~~~----~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~----~~~A~~~y~~Al 145 (145)
T PF09976_consen 77 NAPDPELKPLARLRLARILLQQ----GQYDEALATLQQIPDEAFKALAAELLGDIYLAQGD----YDEARAAYQKAL 145 (145)
T ss_pred hCCCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCC----HHHHHHHHHHhC
Confidence 65444 45888899999866 5779999999774432 356778889999999444 499999999873
No 137
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.92 E-value=0.00015 Score=69.08 Aligned_cols=117 Identities=17% Similarity=0.066 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
++.++|.-+..+|-.+.|-.+..++..|.++... +...+|...|.-|. +++++.++..||.++.+++. +...
T Consensus 664 ~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~----~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~--~~la 737 (799)
T KOG4162|consen 664 GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVK----GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS--PRLA 737 (799)
T ss_pred CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHH----HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC--cchH
Confidence 4467788888888888888889999999998854 56689999999885 78899999999999988763 2234
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
.+...+..|++. .+++||+.||.++.. .||.++|..+|+-|++..
T Consensus 738 ~~~~~L~dalr~dp~n~eaW~~LG~v~k~----~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 738 EKRSLLSDALRLDPLNHEAWYYLGEVFKK----LGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccchHHHHHHHHHHHhhc
Confidence 444488888887 489999999999998 899999999999988753
No 138
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.91 E-value=0.00042 Score=59.78 Aligned_cols=96 Identities=21% Similarity=0.257 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHH-hcCCCCcCCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-
Q 023425 119 MGDPDAQYELGCRL-RVENDYVQSDQQAFYYIEKAVDQ--LH---PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK- 191 (282)
Q Consensus 119 ~g~~~A~~~Lg~~y-~~g~~~~~d~~~A~~~~~kAa~~--g~---~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~- 191 (282)
.++..+.|..+.-+ .. .+++++|+..|++.++. ++ +.+++.||.+|+. .+++++|+.+|++.++.
T Consensus 139 ~~~e~~~Y~~A~~l~~~----~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 139 SGDANTDYNAAIALVQD----KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAAYYFASVVKNY 210 (263)
T ss_pred CCCHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHC
Confidence 34667777777654 44 34569999999999986 33 6899999999999 99999999999999864
Q ss_pred ----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 192 ----GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 192 ----g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
..+++++.+|.+|.. .++.++|...|++.+.
T Consensus 211 P~s~~~~dAl~klg~~~~~----~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQD----KGDTAKAKAVYQQVIK 245 (263)
T ss_pred CCCcchhHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 258899999999987 7899999999998876
No 139
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.89 E-value=0.0015 Score=55.76 Aligned_cols=133 Identities=12% Similarity=-0.030 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHhcCCCCCcCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHhcCC-
Q 023425 66 PLLKTAKENFELALEADNSNTHAR---YWLSKLHLKYHVPGACKAMGAALLVDAANM-----GDPDAQYELGCRLRVEN- 136 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~---~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~-----g~~~A~~~Lg~~y~~g~- 136 (282)
+++++|+..|++.++..|+.+.+. ++||.+|... .+++.|+.+|++.++. ..+.+++.+|.++...+
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~----~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~ 121 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN----ADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDD 121 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcch
Confidence 459999999999999999998876 8999999976 6889999999999863 35789999998753221
Q ss_pred ----------CCcCC---HHHHHHHHHHHHHc--CC---HHHH--------------HHHHHHHhcCCCCccCHHHHHHH
Q 023425 137 ----------DYVQS---DQQAFYYIEKAVDQ--LH---PGAL--------------YLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 137 ----------~~~~d---~~~A~~~~~kAa~~--g~---~~A~--------------~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
....| ..+|+.-|++.++. +. ++|. +.+|..|.. .+++.-|+.-
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~----~~~y~AA~~r 197 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK----RGAYVAVVNR 197 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCchHHHHHH
Confidence 11223 34677888888775 21 2332 334555666 6666667776
Q ss_pred HHHHHHc-----CCHHHHHHHHHHHHc
Q 023425 185 FHRASEK-----GHAGAAIAYGSLLLR 206 (282)
Q Consensus 185 ~~~A~~~-----g~~~a~~~Lg~~y~~ 206 (282)
|+..++. -.++|.+.|...|..
T Consensus 198 ~~~v~~~Yp~t~~~~eal~~l~~ay~~ 224 (243)
T PRK10866 198 VEQMLRDYPDTQATRDALPLMENAYRQ 224 (243)
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 7666664 236677777777765
No 140
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.88 E-value=0.0039 Score=58.88 Aligned_cols=187 Identities=13% Similarity=0.003 Sum_probs=120.4
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC-CCcCH--
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV-PGACK-- 106 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~-~~~~~-- 106 (282)
.|++++|++.+......+.+...+. -..+..+...++.++|...|+..++.+|++..-+..|..+.-.... ...+.
T Consensus 17 ~g~~~~AL~~L~~~~~~I~Dk~~~~-E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~ 95 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQILDKLAVL-EKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEK 95 (517)
T ss_pred CCCHHHHHHHHHhhhhhCCCHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHH
Confidence 4789999999887655444321111 1111222233559999999999999999998877777776621111 11111
Q ss_pred --------------------------------HHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH
Q 023425 107 --------------------------------AMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 107 --------------------------------~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~ 154 (282)
..+..+....+..|-|....+|-.+|...... .-...-+.-|....+
T Consensus 96 ~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~-~~i~~l~~~~~~~l~ 174 (517)
T PF12569_consen 96 LLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKA-AIIESLVEEYVNSLE 174 (517)
T ss_pred HHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHH-HHHHHHHHHHHHhhc
Confidence 34444555556677777777777776642111 001111112222221
Q ss_pred c------------CCH----HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcccHHH
Q 023425 155 Q------------LHP----GALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPECLTK 216 (282)
Q Consensus 155 ~------------g~~----~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~ 216 (282)
. ..| -+++.|+.+|.. .+++++|+++..+|++.. .++-++.-|.+|.+ .+++.+
T Consensus 175 ~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~----~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh----~G~~~~ 246 (517)
T PF12569_consen 175 SNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY----LGDYEKALEYIDKAIEHTPTLVELYMTKARILKH----AGDLKE 246 (517)
T ss_pred ccCCCCCccccccCCchHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----CCCHHH
Confidence 1 112 245778888888 899999999999999975 48889999999999 899999
Q ss_pred HHHHHHHHHH
Q 023425 217 LNAKRVSAAK 226 (282)
Q Consensus 217 A~~~~~~a~~ 226 (282)
|..+++.|-.
T Consensus 247 Aa~~~~~Ar~ 256 (517)
T PF12569_consen 247 AAEAMDEARE 256 (517)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 141
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.87 E-value=5.5e-05 Score=50.41 Aligned_cols=57 Identities=30% Similarity=0.336 Sum_probs=32.4
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 127 ELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 127 ~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.+|..+.. ..++++|+..|+++++. +++.+++.+|.++.. .+++++|+.+|+++++.
T Consensus 2 ~~a~~~~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQ----QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ----QGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHH----CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 34555555 33336666666666655 456666666666665 56666666666666543
No 142
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.85 E-value=7.3e-05 Score=50.17 Aligned_cols=62 Identities=26% Similarity=0.184 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGC 130 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~ 130 (282)
.+++++|+..|+++++.+|+++++.+.|+.+|... +++++|..++++.... .++..+.-++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ----GQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT----T-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 36799999999999999999999999999999977 5779999999999854 44565555544
No 143
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.85 E-value=0.0078 Score=57.09 Aligned_cols=76 Identities=12% Similarity=0.028 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHH
Q 023425 143 QQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNA 219 (282)
Q Consensus 143 ~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 219 (282)
+.|..+|.+|-.. |...-+..-..+-.. .++.++|+.+++.+++. ..+.-+..+|.++.+ .++++.|..
T Consensus 635 eraR~llakar~~sgTeRv~mKs~~~er~----ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~----~~~ie~aR~ 706 (913)
T KOG0495|consen 635 ERARDLLAKARSISGTERVWMKSANLERY----LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ----MENIEMARE 706 (913)
T ss_pred HHHHHHHHHHhccCCcchhhHHHhHHHHH----hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH----HHHHHHHHH
Confidence 4455555444332 333333333333222 34445555555544443 234444445555544 444444444
Q ss_pred HHHHHHH
Q 023425 220 KRVSAAK 226 (282)
Q Consensus 220 ~~~~a~~ 226 (282)
.|.....
T Consensus 707 aY~~G~k 713 (913)
T KOG0495|consen 707 AYLQGTK 713 (913)
T ss_pred HHHhccc
Confidence 4444433
No 144
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.0017 Score=62.85 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH----------------------cCCHHHHHHHHHHHhcCCCCccCHHHH
Q 023425 124 AQYELGCRLRVENDYVQSDQQAFYYIEKAVD----------------------QLHPGALYLLGTVYLTGDCVKKDIASA 181 (282)
Q Consensus 124 A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~----------------------~g~~~A~~~Lg~~y~~g~g~~~d~~~A 181 (282)
.+++.+..+.. ..|++.|++||+|+-. ..++.-+-++|..+.. .++.+-|
T Consensus 860 Tyy~yA~~Lea----r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES----~GemdaA 931 (1416)
T KOG3617|consen 860 TYYNYAKYLEA----RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES----VGEMDAA 931 (1416)
T ss_pred hHHHHHHHHHh----hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc----ccchHHH
Confidence 45555555555 4556888888888632 1345555666776666 7888999
Q ss_pred HHHHHHHHH-----------------------cCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 182 LWCFHRASE-----------------------KGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 182 ~~~~~~A~~-----------------------~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+.+|..|-+ .|+..|+|.||.+|+. .++..+|+++|.+|-.
T Consensus 932 l~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn----~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 932 LSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN----DGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh----hHHHHHHHHHHHHHHH
Confidence 988887632 4788899999999999 8999999999999854
No 145
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.78 E-value=0.00015 Score=58.05 Aligned_cols=82 Identities=15% Similarity=0.043 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCC------CcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCc
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVP------GACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYV 139 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~------~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~ 139 (282)
|+.|.+.++.....+|.++++.++.|..+...-.. ..-+++|+.-|+.|+ ++...+|+++||+.|..-....
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 78899999999999999999999999987744111 122466777777775 6788999999999987644434
Q ss_pred CCHHHHHHHH
Q 023425 140 QSDQQAFYYI 149 (282)
Q Consensus 140 ~d~~~A~~~~ 149 (282)
+|..+|-.+|
T Consensus 87 ~d~~~A~~~F 96 (186)
T PF06552_consen 87 PDTAEAEEYF 96 (186)
T ss_dssp --HHHHHHHH
T ss_pred CChHHHHHHH
Confidence 4443443333
No 146
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.76 E-value=0.00011 Score=66.90 Aligned_cols=70 Identities=14% Similarity=0.070 Sum_probs=56.9
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHH---HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 81 ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDA---QYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 81 ~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A---~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
.+|++++++++||..|... .++++|+.+|++|++ ++++++ ++|+|.+|...+.. ++|+.++++|++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~l----GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~----dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSK----GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG----KKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHh
Confidence 7899999999999998866 577999999999875 566654 89999999885555 9999999999987
Q ss_pred CCH
Q 023425 156 LHP 158 (282)
Q Consensus 156 g~~ 158 (282)
+++
T Consensus 142 sn~ 144 (453)
T PLN03098 142 YNL 144 (453)
T ss_pred cch
Confidence 433
No 147
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.75 E-value=0.00014 Score=66.25 Aligned_cols=68 Identities=19% Similarity=-0.067 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCC
Q 023425 50 VDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHA---RYWLSKLHLKYHVPGACKAMGAALLVDAANMGD 121 (282)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a---~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~ 121 (282)
......++.+..+...+++++|+..|++|++++|+++++ +|++|.+|... .+.++|+.+|++|++.++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L----Gr~dEAla~LrrALelsn 143 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR----EEGKKAADCLRTALRDYN 143 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcc
Confidence 345566677777777788888888888888888888855 88888888865 456888888888887643
No 148
>PLN03077 Protein ECB2; Provisional
Probab=97.75 E-value=0.0017 Score=65.38 Aligned_cols=169 Identities=10% Similarity=-0.025 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 67 LLKTAKENFELALEAD-NSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~-~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+++.|.+.+....+.. +.+...+..|-.+|... .+.++|.+.|.+..++ +...+..+...|...+.. ++|
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~----g~~~~A~~vf~~m~~~-d~~s~n~li~~~~~~g~~----~~A 373 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL----GSWGEAEKVFSRMETK-DAVSWTAMISGYEKNGLP----DKA 373 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc----CCHHHHHHHHhhCCCC-CeeeHHHHHHHHHhCCCH----HHH
Confidence 3444444444443211 12344444455555433 3446666666554332 344555555555553333 666
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcccHHHHHH
Q 023425 146 FYYIEKAVDQLH---PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG---HAGAAIAYGSLLLRGVQVPECLTKLNA 219 (282)
Q Consensus 146 ~~~~~kAa~~g~---~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 219 (282)
+..|++..+.|. ...+..+=..+.. .+++++|.+.+..+.+.| +...+..|-.+|.+ .+++++|..
T Consensus 374 ~~lf~~M~~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k----~g~~~~A~~ 445 (857)
T PLN03077 374 LETYALMEQDNVSPDEITIASVLSACAC----LGDLDVGVKLHELAERKGLISYVVVANALIEMYSK----CKCIDKALE 445 (857)
T ss_pred HHHHHHHHHhCCCCCceeHHHHHHHHhc----cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH----cCCHHHHHH
Confidence 666666555431 2222222222333 566777777777776665 34456666677766 677778877
Q ss_pred HHHHHHH---HHchhc--hhccCCCHHHHHHHHHHHHH
Q 023425 220 KRVSAAK---KARANL--ESNLMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 220 ~~~~a~~---~a~~~l--g~~~~~~~~~A~~~~~~Aa~ 252 (282)
.|++-.+ ..|..+ |+...++.++|+..|++...
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7776543 123332 34567778888888888764
No 149
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.0016 Score=63.08 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=28.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 155 QLHPGALYLLGTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 155 ~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
.|+.-|+|.||.+|.+ .+++-+|+++|.+|-
T Consensus 964 sgd~AAcYhlaR~YEn----~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 964 SGDKAACYHLARMYEN----DGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cccHHHHHHHHHHhhh----hHHHHHHHHHHHHHH
Confidence 4899999999999999 999999999999983
No 150
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.72 E-value=0.0038 Score=57.09 Aligned_cols=147 Identities=15% Similarity=-0.013 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 023425 83 NSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHP 158 (282)
Q Consensus 83 ~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~ 158 (282)
|+.+.++|..+..+... ..++.|...+..-+ .++|+..+-..+.++..-+.. ++|.+.++++... +.+
T Consensus 303 ~~~~aa~YG~A~~~~~~----~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~----~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 303 RGGLAAQYGRALQTYLA----GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKA----KEAIERLKKALALDPNSP 374 (484)
T ss_pred ccchHHHHHHHHHHHHh----cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHhcCCCcc
Confidence 56677777777766644 34466666666644 467777777777777775555 7777777777776 456
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhchhcc
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNL 236 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg~~~ 236 (282)
--..++|.+|.. .+++.+|+..+...... .++..+..|+..|.. .++..++...+... ...
T Consensus 375 ~l~~~~a~all~----~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~----~g~~~~a~~A~AE~---------~~~ 437 (484)
T COG4783 375 LLQLNLAQALLK----GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE----LGNRAEALLARAEG---------YAL 437 (484)
T ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH----hCchHHHHHHHHHH---------HHh
Confidence 666777777777 56677777777776554 467777777777776 45544443333221 234
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 023425 237 MNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 237 ~~~~~~A~~~~~~Aa~~g 254 (282)
.++.++|+..+.+|.+..
T Consensus 438 ~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 438 AGRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 567778888888887765
No 151
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.68 E-value=0.0073 Score=55.31 Aligned_cols=147 Identities=14% Similarity=0.061 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CH
Q 023425 119 MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HA 194 (282)
Q Consensus 119 ~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~ 194 (282)
.+.+.++|-.+..++. ..+++.|+..+..-+.. +++..+...+.++.. .++.++|.+.+++++... .+
T Consensus 303 ~~~~aa~YG~A~~~~~----~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~----~nk~~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 303 RGGLAAQYGRALQTYL----AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE----ANKAKEAIERLKKALALDPNSP 374 (484)
T ss_pred ccchHHHHHHHHHHHH----hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcc
Confidence 4455555555555544 22225555555554433 555555555555555 555555555555555542 23
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhch--hccCCCHHHHHHHHHHHHH-hc-cHHHHHHHHH
Q 023425 195 GAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLE--SNLMNPVEKAKEQFEVAAQ-AG-CNLGLRWLQR 264 (282)
Q Consensus 195 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg--~~~~~~~~~A~~~~~~Aa~-~g-~~~a~~~l~~ 264 (282)
--..++|.+|+. .+++.+|+..++.... .+|..|+ +...+|..+|..-+..... .| ...|...+..
T Consensus 375 ~l~~~~a~all~----~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 375 LLQLNLAQALLK----GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445555555555 2333455555555543 2444444 3344444444444333322 22 3334444444
Q ss_pred HHHHHhhcCCccc
Q 023425 265 IEEEEKRLLTESS 277 (282)
Q Consensus 265 l~~~~~~~~~~~~ 277 (282)
..+..+.-..+|.
T Consensus 451 A~~~~~~~~~~~a 463 (484)
T COG4783 451 ASQQVKLGFPDWA 463 (484)
T ss_pred HHHhccCCcHHHH
Confidence 4443333333333
No 152
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.63 E-value=7.2e-05 Score=43.19 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=27.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHH
Q 023425 74 NFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGA 110 (282)
Q Consensus 74 ~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~ 110 (282)
.|++|++.+|+++.++++||.+|... ++.++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~----g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQ----GDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHC----cCHHhhc
Confidence 38899999999999999999999966 3556664
No 153
>PLN03077 Protein ECB2; Provisional
Probab=97.62 E-value=0.0035 Score=63.22 Aligned_cols=199 Identities=12% Similarity=-0.082 Sum_probs=103.3
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.++.++|.+++....+.........+-.....+...+++++|.+.|++.. ..+..+|..+-..|... .+.++|
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~vs~~~mi~~~~~~----g~~~eA 474 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP---EKDVISWTSIIAGLRLN----NRCFEA 474 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeHHHHHHHHHHC----CCHHHH
Confidence 56677777776665543222222222222222333355777777776652 23455566555555543 344666
Q ss_pred HHHHHHHHhCCCHH---------HH----------------------------HHHHHHHhcCCCCcCCHHHHHHHHHHH
Q 023425 110 AALLVDAANMGDPD---------AQ----------------------------YELGCRLRVENDYVQSDQQAFYYIEKA 152 (282)
Q Consensus 110 ~~~~~~Aa~~g~~~---------A~----------------------------~~Lg~~y~~g~~~~~d~~~A~~~~~kA 152 (282)
+..|++..+.-.|+ |+ ..|-.+|...+ +.++|...|...
T Consensus 475 ~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G----~~~~A~~~f~~~ 550 (857)
T PLN03077 475 LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG----RMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC----CHHHHHHHHHhc
Confidence 66666654311111 11 11223333322 336777777665
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH--
Q 023425 153 VDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG---HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK-- 227 (282)
Q Consensus 153 a~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 227 (282)
..+..++..|...|.. .++.++|+..|++..+.| +...+..+-..+.+ .+.+++|..+|+.....
T Consensus 551 --~~d~~s~n~lI~~~~~----~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~----~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 551 --EKDVVSWNILLTGYVA----HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR----SGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred --CCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh----cChHHHHHHHHHHHHHHhC
Confidence 4566667777666666 677777777777766654 23333333333443 45667777777666531
Q ss_pred ------Hchhch--hccCCCHHHHHHHHHH
Q 023425 228 ------ARANLE--SNLMNPVEKAKEQFEV 249 (282)
Q Consensus 228 ------a~~~lg--~~~~~~~~~A~~~~~~ 249 (282)
.+..+. .+..++.++|..++++
T Consensus 621 i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 111222 3455666666666665
No 154
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0015 Score=56.43 Aligned_cols=77 Identities=9% Similarity=0.015 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 023425 144 QAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPECLTKLNAKR 221 (282)
Q Consensus 144 ~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 221 (282)
-+....++-...|.++...+.|.+.+. .++++.|++-|+.|.+-+ .+...|+++.+++. .+++..|.++.
T Consensus 130 g~rsLveQlp~en~Ad~~in~gCllyk----egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~----~~qyasALk~i 201 (459)
T KOG4340|consen 130 GSRSLVEQLPSENEADGQINLGCLLYK----EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS----SRQYASALKHI 201 (459)
T ss_pred chHHHHHhccCCCccchhccchheeec----cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh----hhhHHHHHHHH
Confidence 333444444445778888899988888 899999999999999864 47789999999999 89999999999
Q ss_pred HHHHHHH
Q 023425 222 VSAAKKA 228 (282)
Q Consensus 222 ~~a~~~a 228 (282)
..-++++
T Consensus 202 SEIieRG 208 (459)
T KOG4340|consen 202 SEIIERG 208 (459)
T ss_pred HHHHHhh
Confidence 9988854
No 155
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.57 E-value=0.039 Score=49.40 Aligned_cols=239 Identities=11% Similarity=-0.032 Sum_probs=128.9
Q ss_pred hhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHH--HHhcCC
Q 023425 23 QHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSK--LHLKYH 100 (282)
Q Consensus 23 ~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~--~~~~~~ 100 (282)
.......+|++.+|...+.+..+ -.+.....+......-+..+|.+.|-.|..++.+. ++++.-...|.. +....
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae-~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~- 166 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAE-HGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNR- 166 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhh-cCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhC-
Confidence 34444557777777777766433 22333334444444555567788888888888764 244444444433 33333
Q ss_pred CCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCC--------------cCCHHHHHHHHHHHHH----------
Q 023425 101 VPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDY--------------VQSDQQAFYYIEKAVD---------- 154 (282)
Q Consensus 101 ~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~--------------~~d~~~A~~~~~kAa~---------- 154 (282)
.|++.|..-..++.+. .++...--.-.+|...+.. --+.+++..+=.+|.+
T Consensus 167 ---~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 167 ---RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred ---CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 3456666666665543 2444443333444331110 0001122221111111
Q ss_pred ----------------cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcccHHHH
Q 023425 155 ----------------QLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG-HAGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 155 ----------------~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-~~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
..+|.-...++.-+.. .++.+.|.++.+.+.+.+ ++. ...+--+..- .+-.+-...+
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~-~d~~~l~k~~ 317 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWDPR-LCRLIPRLRP-GDPEPLIKAA 317 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccChh-HHHHHhhcCC-CCchHHHHHH
Confidence 1334444445555555 889999999999998875 455 2222222211 1111222234
Q ss_pred HHHHHHHHH--HHchhchhc--cCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcC
Q 023425 218 NAKRVSAAK--KARANLESN--LMNPVEKAKEQFEVAAQAG-CNLGLRWLQRIEEEEKRLL 273 (282)
Q Consensus 218 ~~~~~~a~~--~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g-~~~a~~~l~~l~~~~~~~~ 273 (282)
.+|.++..+ ..++.||.. ..+...+|..+|+.|+..+ +.....+++.......++.
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChH
Confidence 455555544 356678843 6778999999999999988 5567777888777654443
No 156
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.55 E-value=0.019 Score=47.58 Aligned_cols=191 Identities=14% Similarity=0.034 Sum_probs=120.0
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHH
Q 023425 53 VIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGC 130 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~ 130 (282)
...+..|..+-..+-..-|..-|.+++.+.|.-|++.+.||..+... .+++.|.+.|....+ +++--|..|-|.
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a----~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA----GNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhc----ccchHHHHHhhhHhccCCcchHHHhccce
Confidence 34455555555556677888889999999999999999999998865 677999999999875 567788889998
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHcCCC
Q 023425 131 RLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH-AGAAIAYGSLLLRGVQ 209 (282)
Q Consensus 131 ~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~-~~a~~~Lg~~y~~g~g 209 (282)
.+..|++. +.|.+=+.+--..+-.+-...|- +|.. ..+-|+.+|..-+.+=++.-+ ..--.+|-.+|.....
T Consensus 142 ~~YY~gR~----~LAq~d~~~fYQ~D~~DPfR~LW-LYl~--E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS 214 (297)
T COG4785 142 ALYYGGRY----KLAQDDLLAFYQDDPNDPFRSLW-LYLN--EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKIS 214 (297)
T ss_pred eeeecCch----HhhHHHHHHHHhcCCCChHHHHH-HHHH--HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhcc
Confidence 88888887 66666665554442222222222 2222 114667777766555444433 2222333334433111
Q ss_pred CcccHHHHHH------HHHHHHHHHchhch--hccCCCHHHHHHHHHHHHHhc
Q 023425 210 VPECLTKLNA------KRVSAAKKARANLE--SNLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 210 ~~~~~~~A~~------~~~~a~~~a~~~lg--~~~~~~~~~A~~~~~~Aa~~g 254 (282)
++.-.+.+.. -+-.-....++.|| ....++.++|...|+.|+.+.
T Consensus 215 ~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 215 EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1111111111 11111225777888 457889999999999999876
No 157
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.017 Score=48.25 Aligned_cols=149 Identities=14% Similarity=0.091 Sum_probs=94.1
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHhcCCCCCc
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALE------ADNSNTHARYWLSKLHLKYHVPGA 104 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------~~~g~~~a~~~Lg~~~~~~~~~~~ 104 (282)
+.+++|.+++.++.+.. ...+++..|-..|-+|++ ...+-+..+...+.+|...
T Consensus 28 ~k~eeAadl~~~Aan~y---------------klaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~----- 87 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMY---------------KLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV----- 87 (288)
T ss_pred cchHHHHHHHHHHHHHH---------------HHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-----
Confidence 46899999998875421 112335555555555554 2223345566677777654
Q ss_pred CHHHHHHHHHHHHh----CCC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC------HHHHHHHHHHH
Q 023425 105 CKAMGAALLVDAAN----MGD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LH------PGALYLLGTVY 168 (282)
Q Consensus 105 ~~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~------~~A~~~Lg~~y 168 (282)
+..+|+.++.+|++ .|. +.-+..+|.+|... .+|+++|+.+|++|++- |. -.++...+..-
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd---l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD---LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 67999999999985 443 22355678888763 47789999999999984 21 22333334333
Q ss_pred hcCCCCccCHHHHHHHHHHHHHc--CCHH-------HHHHHHHHHHc
Q 023425 169 LTGDCVKKDIASALWCFHRASEK--GHAG-------AAIAYGSLLLR 206 (282)
Q Consensus 169 ~~g~g~~~d~~~A~~~~~~A~~~--g~~~-------a~~~Lg~~y~~ 206 (282)
-. .+.+.+|+..|++.+.. +++. =.+.-|.|++.
T Consensus 165 a~----leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 165 AQ----LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HH----HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 33 67799999999987553 3322 24455677765
No 158
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.44 E-value=0.058 Score=51.20 Aligned_cols=156 Identities=12% Similarity=-0.034 Sum_probs=103.3
Q ss_pred hhHHhhhhhhhcchhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHH
Q 023425 10 TLKSAALGLLQSNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHAR 89 (282)
Q Consensus 10 ~l~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~ 89 (282)
+++--++-+.+..| |++.+.+..+-++.. ..++...-..|-.....++-++|..+-+.++..++.++..|
T Consensus 9 ~lF~~~lk~yE~kQ---------YkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCw 78 (700)
T KOG1156|consen 9 ALFRRALKCYETKQ---------YKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCW 78 (700)
T ss_pred HHHHHHHHHHHHHH---------HHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhH
Confidence 44444455444444 777777777666633 33344444555556667889999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 023425 90 YWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLG 165 (282)
Q Consensus 90 ~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg 165 (282)
.-+|.++... +++++|++||+.|. ++++...+..|+.+-.+ ..|++-...--.+-.+. ++-..+..++
T Consensus 79 Hv~gl~~R~d----K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q----mRd~~~~~~tr~~LLql~~~~ra~w~~~A 150 (700)
T KOG1156|consen 79 HVLGLLQRSD----KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ----MRDYEGYLETRNQLLQLRPSQRASWIGFA 150 (700)
T ss_pred HHHHHHHhhh----hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999865 78899999999997 56788999999887666 33334333333333332 3333444444
Q ss_pred HHHhcCCCCccCHHHHHHHHHH
Q 023425 166 TVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 166 ~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
..+.- .+++..|....+.
T Consensus 151 vs~~L----~g~y~~A~~il~e 168 (700)
T KOG1156|consen 151 VAQHL----LGEYKMALEILEE 168 (700)
T ss_pred HHHHH----HHHHHHHHHHHHH
Confidence 44444 5667777655443
No 159
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.43 E-value=0.012 Score=59.63 Aligned_cols=213 Identities=9% Similarity=-0.093 Sum_probs=134.2
Q ss_pred cccchHHHHHHHHHHhhhhhHHH----HHHHHHhhcCCCchhhHHHHHHHHHHHHHcCC--CC----HHHHHHHHHHHhc
Q 023425 29 LHSRNKKAMELIAKGWSALKEVD----RVIDYCELNDRRLIPLLKTAKENFELALEADN--SN----THARYWLSKLHLK 98 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--g~----~~a~~~Lg~~~~~ 98 (282)
..+++++|..++..++....... .......+......+++++|..+++++++... ++ ..+...+|.++..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 46788999998888765322111 11222233334445779999999999875311 11 2355667777765
Q ss_pred CCCCCcCHHHHHHHHHHHHhC----CC------HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C---CHHHH
Q 023425 99 YHVPGACKAMGAALLVDAANM----GD------PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----L---HPGAL 161 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~~----g~------~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g---~~~A~ 161 (282)
. .+.+.|..++.++.+. +. ......+|.++...++. ++|..++.++... + .+.++
T Consensus 544 ~----G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~----~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 544 Q----GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL----DEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred C----CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH----HHHHHHHHHhHHhhhccCchHHHHHH
Confidence 4 5679999998888642 21 22345677777764444 8999888888663 1 24555
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC-HHH----------------------------------------
Q 023425 162 YLLGTVYLTGDCVKKDIASALWCFHRASEK----GH-AGA---------------------------------------- 196 (282)
Q Consensus 162 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~-~~a---------------------------------------- 196 (282)
..+|.++.. .++++.|..++.++... +. ...
T Consensus 616 ~~la~~~~~----~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 616 AMLAKISLA----RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 667778777 78888888888877432 11 000
Q ss_pred --HHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------------Hchhch--hccCCCHHHHHHHHHHHHHhccHH
Q 023425 197 --AIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------------ARANLE--SNLMNPVEKAKEQFEVAAQAGCNL 257 (282)
Q Consensus 197 --~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------a~~~lg--~~~~~~~~~A~~~~~~Aa~~g~~~ 257 (282)
...++.++.. .+++++|...+.++... ++..+| ....++.++|..++.+|.+...+.
T Consensus 692 ~~~~~~a~~~~~----~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 692 GQWRNIARAQIL----LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 1233334433 46678888888888762 222333 337789999999999999877443
No 160
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0061 Score=52.68 Aligned_cols=107 Identities=16% Similarity=0.008 Sum_probs=85.0
Q ss_pred HHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 023425 107 AMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASAL 182 (282)
Q Consensus 107 ~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~ 182 (282)
+.-+.-++.-+ +++|++.+..||.+|...++. ..|..-|.+|.+. .+++.+..+|.++....| ..+..++.
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~----~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-~~~ta~a~ 213 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRA----SDALLAYRNALRLAGDNPEILLGLAEALYYQAG-QQMTAKAR 213 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcch----hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CcccHHHH
Confidence 44444444443 679999999999999996665 9999999999998 689999999988776554 77888999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 023425 183 WCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRV 222 (282)
Q Consensus 183 ~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 222 (282)
..|++++.. .++.+.+.||.-++. ++++.+|....+
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe----~g~~~~A~~~Wq 251 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFE----QGDYAEAAAAWQ 251 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHH
Confidence 999999876 478899999999998 777765444443
No 161
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0039 Score=56.01 Aligned_cols=154 Identities=11% Similarity=-0.059 Sum_probs=103.3
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH--H----hcCC--C
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKL--H----LKYH--V 101 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~--~----~~~~--~ 101 (282)
.+++++|+..-..-+. +........+..|.-+.-..+.++|+.+|++++.++|.+.++.-.--.. + ..|+ .
T Consensus 182 ~~~~~~a~~ea~~ilk-ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f 260 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILK-LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF 260 (486)
T ss_pred cccchhHHHHHHHHHh-cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh
Confidence 4556666543322222 3333344444555556666789999999999999988887754321111 1 1111 1
Q ss_pred CCcCHHHHHHHHHHHHhCC------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCC
Q 023425 102 PGACKAMGAALLVDAANMG------DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL--HPGALYLLGTVYLTGDC 173 (282)
Q Consensus 102 ~~~~~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~g~g 173 (282)
....+.+|.+.|..|+..+ ++.-+.+.+.+...-++. .+|+.--..|+..+ ...|+..-|.|++.
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl----~eaisdc~~Al~iD~syikall~ra~c~l~--- 333 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL----REAISDCNEALKIDSSYIKALLRRANCHLA--- 333 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc----hhhhhhhhhhhhcCHHHHHHHHHHHHHHHH---
Confidence 2356789999999998532 344566777777775555 88888888888874 67888889999988
Q ss_pred CccCHHHHHHHHHHHHHcC
Q 023425 174 VKKDIASALWCFHRASEKG 192 (282)
Q Consensus 174 ~~~d~~~A~~~~~~A~~~g 192 (282)
.++++.|++.|++|.+..
T Consensus 334 -le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 334 -LEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred -HHHHHHHHHHHHHHHhhc
Confidence 889999999999998764
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.34 E-value=0.0049 Score=56.19 Aligned_cols=108 Identities=20% Similarity=0.158 Sum_probs=84.7
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCC
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQS 141 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d 141 (282)
..+.++.|+..|++..+. +|++...|+.++... .+..+|++.+.++++ +.+.+.+...+..+... ++
T Consensus 181 ~t~~~~~ai~lle~L~~~---~pev~~~LA~v~l~~----~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k----~~ 249 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRER---DPEVAVLLARVYLLM----NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK----KK 249 (395)
T ss_pred hcccHHHHHHHHHHHHhc---CCcHHHHHHHHHHhc----CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CC
Confidence 346688999999998654 466788888888754 355888999999985 34677777788888874 44
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 142 DQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 142 ~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
++.|+...++|.+. .+..+++.|+.+|.. .+|++.|+..+.
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~----~~d~e~ALlaLN 292 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQ----LGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----cCCHHHHHHHHh
Confidence 49999999999887 678889999999998 889998886555
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.31 E-value=0.0014 Score=44.48 Aligned_cols=60 Identities=22% Similarity=0.123 Sum_probs=49.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYEL 128 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~L 128 (282)
.+++++|+++++++++.+|.++..++.+|.++... +++.+|+..|.++++. +++.+....
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~----g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQL----GRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh----ccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 35699999999999999999999999999999976 5779999999999854 455554443
No 164
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=0.0057 Score=52.18 Aligned_cols=91 Identities=20% Similarity=0.133 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----CCH
Q 023425 89 RYWLSKLHLKYHVPGACKAMGAALLVDAANMG-----DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-----LHP 158 (282)
Q Consensus 89 ~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-----g~~ 158 (282)
.|+.+.-+... .++..|..-|..-++.. -++|+|+||.+++. ..|++.|...|..+++. .-|
T Consensus 144 ~Y~~A~~~~ks----gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 144 LYNAALDLYKS----GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCCCCCCh
Confidence 34444444432 34566666666665532 35666666666666 33336666666666664 245
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
++++.||.+... .++.++|+..|++.++.
T Consensus 216 dallKlg~~~~~----l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 216 DALLKLGVSLGR----LGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Confidence 666666666666 66666666666666554
No 165
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.21 E-value=0.098 Score=46.34 Aligned_cols=161 Identities=15% Similarity=-0.004 Sum_probs=93.7
Q ss_pred HHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHH
Q 023425 54 IDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCR 131 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~ 131 (282)
..+..|......+.+..|+..|..|++.+|++-.|.|.-+..|.--+.. .-|+.=+.+.++ +++..|-..-|.+
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks----k~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS----KAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC----ccchhhHHHHHhcCccHHHHHHHhchh
Confidence 3444445555556688999999999999999989999888888754322 445555666553 4566666666777
Q ss_pred HhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcC--------CCCccCHHHHHHHHHHHHHcC--CHHH
Q 023425 132 LRVENDYVQSDQQAFYYIEKAVDQL-----HPGALYLLGTVYLTG--------DCVKKDIASALWCFHRASEKG--HAGA 196 (282)
Q Consensus 132 y~~g~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~g--------~g~~~d~~~A~~~~~~A~~~g--~~~a 196 (282)
++..+.. ++|..=|.+.++.. ..+++..|+.+-..- ....+|+..|+++..+.++-. +++-
T Consensus 116 llK~Gel----e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 116 LLKQGEL----EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred hhhcccH----HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 7665554 66666666666542 233433333221100 012456666666666655543 2333
Q ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 197 AIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 197 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+-.-+.||.. ...+.+|++=.+.+..
T Consensus 192 ~~~Rakc~i~----~~e~k~AI~Dlk~ask 217 (504)
T KOG0624|consen 192 RQARAKCYIA----EGEPKKAIHDLKQASK 217 (504)
T ss_pred HHHHHHHHHh----cCcHHHHHHHHHHHHh
Confidence 3344555555 4555556655555544
No 166
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.20 E-value=0.029 Score=56.81 Aligned_cols=182 Identities=15% Similarity=-0.009 Sum_probs=120.9
Q ss_pred cccchHHHHHHHHHHhhhhhH--------HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCC-CH----HHHHHHHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKE--------VDRVIDYCELNDRRLIPLLKTAKENFELALEADNS-NT----HARYWLSKL 95 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g-~~----~a~~~Lg~~ 95 (282)
..+++++|..++..+...... .........+......+++++|..+++++++..+. +. .+...+|.+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 356788888888776443221 01111111222223356799999999999873332 22 355667777
Q ss_pred HhcCCCCCcCHHHHHHHHHHHHh----CCC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC------
Q 023425 96 HLKYHVPGACKAMGAALLVDAAN----MGD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LH------ 157 (282)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~------ 157 (282)
+... .+.+.|..+++++.. .|+ ..+..++|.++...++. +.|..++.++.+. +.
T Consensus 501 ~~~~----G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~----~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 501 HHCK----GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL----QAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHc----CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHhccccccHH
Confidence 7644 577999999999874 233 34667888888875555 9999999988764 21
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----G---HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
......+|.++.. .+++++|..+++++... + .+.++..+|.++.. .++++.|..++.++..
T Consensus 573 ~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 573 EFLLRIRAQLLWE----WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA----RGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 1234567888877 79999999999998663 1 24456667888876 6788888887777744
No 167
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0063 Score=54.57 Aligned_cols=77 Identities=17% Similarity=0.105 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHH
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAA 197 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~ 197 (282)
..++.||+.++.. .+++..|+.+-.++.+. +|+.|+|+-|.++.. .++++.|+..|++|++. .+..+.
T Consensus 257 ~~~~lNlA~c~lK----l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~----~~e~~~A~~df~ka~k~~P~Nka~~ 328 (397)
T KOG0543|consen 257 LACHLNLAACYLK----LKEYKEAIESCNKVLELDPNNVKALYRRGQALLA----LGEYDLARDDFQKALKLEPSNKAAR 328 (397)
T ss_pred HHHhhHHHHHHHh----hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCcHHHH
Confidence 3578899999999 55559999999999987 799999999999999 89999999999999774 678888
Q ss_pred HHHHHHHHc
Q 023425 198 IAYGSLLLR 206 (282)
Q Consensus 198 ~~Lg~~y~~ 206 (282)
..|..|-.+
T Consensus 329 ~el~~l~~k 337 (397)
T KOG0543|consen 329 AELIKLKQK 337 (397)
T ss_pred HHHHHHHHH
Confidence 888887765
No 168
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.14 E-value=0.015 Score=44.38 Aligned_cols=90 Identities=19% Similarity=0.054 Sum_probs=58.1
Q ss_pred cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CC-----HHHHHHHHHHHhcCCCCc
Q 023425 104 ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-LH-----PGALYLLGTVYLTGDCVK 175 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-g~-----~~A~~~Lg~~y~~g~g~~ 175 (282)
.+.+.|++.|.+|+. +..+.++.|-+..+.-.++. ++|+.-+.+|.+. |. -.+++.-|.+|.. .
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~----e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl----~ 128 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDD----EEALDDLNKALELAGDQTRTACQAFVQRGLLYRL----L 128 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCCh----HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH----h
Confidence 345666666666654 34666666666666553333 6666666666665 21 2455667777777 7
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023425 176 KDIASALWCFHRASEKGHAGAAIAYG 201 (282)
Q Consensus 176 ~d~~~A~~~~~~A~~~g~~~a~~~Lg 201 (282)
++.+.|..=|+.|++.|++.|...|-
T Consensus 129 g~dd~AR~DFe~AA~LGS~FAr~QLV 154 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKFAREQLV 154 (175)
T ss_pred CchHHHHHhHHHHHHhCCHHHHHHHH
Confidence 78888888888888888877765553
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.14 E-value=0.1 Score=44.47 Aligned_cols=100 Identities=16% Similarity=0.061 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCH---HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDP---DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--- 155 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~---~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--- 155 (282)
..+...|..|.-+... +++++|+..|++... ++.+ .+.+.||.+|+. .+++++|+.+|++.++.
T Consensus 30 ~~~~~~Y~~A~~~~~~----g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~----~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 30 NPPSEIYATAQQKLQD----GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCcC
Confidence 4677788888877754 588999999999975 4444 456999999999 56669999999999997
Q ss_pred --CCHHHHHHHHHHHhcC-----------CCCccCH---HHHHHHHHHHHHc
Q 023425 156 --LHPGALYLLGTVYLTG-----------DCVKKDI---ASALWCFHRASEK 191 (282)
Q Consensus 156 --g~~~A~~~Lg~~y~~g-----------~g~~~d~---~~A~~~~~~A~~~ 191 (282)
.-+.+++.+|.++..- .....|. .+|+.-|++-++.
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH
Confidence 3578899999874221 1123333 4677888887775
No 170
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.09 E-value=0.064 Score=44.37 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--G---DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L 156 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g---~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g 156 (282)
..+.+.|..|..+... +++.+|+..|++..+. + -++|.+.+|..+.. .+|+..|+..|++-++. +
T Consensus 3 ~~~~~lY~~a~~~~~~----g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 3 DTAEALYQKALEALQQ----GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----QGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp --HHHHHHHHHHHHHC----T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH-TT
T ss_pred CCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCC
Confidence 3567777788877766 6678888888887752 2 35778888888777 44558888888887775 2
Q ss_pred ---CHHHHHHHHHHHhcCC-CC------ccCHHHHHHHHHHHHHc
Q 023425 157 ---HPGALYLLGTVYLTGD-CV------KKDIASALWCFHRASEK 191 (282)
Q Consensus 157 ---~~~A~~~Lg~~y~~g~-g~------~~d~~~A~~~~~~A~~~ 191 (282)
-+.|++.+|.++..-. ++ .....+|+..|+.-++.
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH
Confidence 3567777777765421 11 23344566666665553
No 171
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.08 E-value=0.02 Score=47.38 Aligned_cols=133 Identities=14% Similarity=0.086 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHhcCC-
Q 023425 66 PLLKTAKENFELALEADNS---NTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--G---DPDAQYELGCRLRVEN- 136 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g---~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g---~~~A~~~Lg~~y~~g~- 136 (282)
+++.+|+..|++.+..-|+ -+.|.+.+|..+... ++++.|+..|++-++. + -+.|++.+|..+....
T Consensus 19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~----~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~ 94 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ----GDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIP 94 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCc
Confidence 4599999999999876554 456889999999876 6789999999998752 3 3578999998865431
Q ss_pred ------CCcCCHHHHHHHHHHHHHc--CC-----------------HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 137 ------DYVQSDQQAFYYIEKAVDQ--LH-----------------PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 137 ------~~~~d~~~A~~~~~kAa~~--g~-----------------~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.-.....+|+..|+..++. ++ ..--+.+|..|+. .+.+.-|+..|+..++.
T Consensus 95 ~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~----~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 95 GILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK----RGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC----TT-HHHHHHHHHHHHHH
T ss_pred cchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHH
Confidence 1122346788888887764 11 1222445777777 77888888888887775
Q ss_pred --C---CHHHHHHHHHHHHc
Q 023425 192 --G---HAGAAIAYGSLLLR 206 (282)
Q Consensus 192 --g---~~~a~~~Lg~~y~~ 206 (282)
+ ..+|+..|...|..
T Consensus 171 yp~t~~~~~al~~l~~~y~~ 190 (203)
T PF13525_consen 171 YPDTPAAEEALARLAEAYYK 190 (203)
T ss_dssp STTSHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHH
Confidence 2 25567777777765
No 172
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.053 Score=45.45 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh----CCC----HHHHHHHHHHHhcCCCC
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN----MGD----PDAQYELGCRLRVENDY 138 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~g~~~ 138 (282)
.+++|.+.|.+|.. +|.|+ +++..|-..|.+|++ .|+ ...+...+.+|..
T Consensus 29 k~eeAadl~~~Aan--------~ykla----------K~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk---- 86 (288)
T KOG1586|consen 29 KYEEAAELYERAAN--------MYKLA----------KNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK---- 86 (288)
T ss_pred chHHHHHHHHHHHH--------HHHHH----------HhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc----
Confidence 68999999999942 23332 344666666777764 232 2344445566654
Q ss_pred cCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CC---HHH---HHHHHH
Q 023425 139 VQSDQQAFYYIEKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GH---AGA---AIAYGS 202 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~---~~a---~~~Lg~ 202 (282)
.|+++|+.++++|++. |. +.-...||.+|... ..|+++|+.+|++|++- |. ..| +...+.
T Consensus 87 -~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd---l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 87 -VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD---LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred -cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 3669999999999885 32 22235688899872 48999999999999883 22 111 222222
Q ss_pred HHHcCCCCcccHHHHHHHHHHHHH
Q 023425 203 LLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 203 ~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+=. ..+.+.+|+..|++.+.
T Consensus 163 yaa----~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 163 YAA----QLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHH----HHHHHHHHHHHHHHHHH
Confidence 222 26788899999988876
No 173
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.04 E-value=0.016 Score=52.93 Aligned_cols=109 Identities=16% Similarity=0.085 Sum_probs=92.2
Q ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHH
Q 023425 104 ACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASA 181 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A 181 (282)
+.++.|+.+|++-.+.. |+....|+.++...+. ..+|++.+.+++.. .+.+.+..-+..+.. .++++.|
T Consensus 183 ~~~~~ai~lle~L~~~~-pev~~~LA~v~l~~~~----E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~----k~~~~lA 253 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERD-PEVAVLLARVYLLMNE----EVEAIRLLNEALKENPQDSELLNLQAEFLLS----KKKYELA 253 (395)
T ss_pred ccHHHHHHHHHHHHhcC-CcHHHHHHHHHHhcCc----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHH
Confidence 56799999999977654 7888899999987443 48999999999986 467777788888988 8999999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 182 LWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 182 ~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
+...++|++. .+..+++.|+.+|.. .++++.|+...+-..
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~----~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQ----LGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHh----cCCHHHHHHHHhcCc
Confidence 9999999886 568899999999999 899999987776554
No 174
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.03 E-value=0.011 Score=45.04 Aligned_cols=92 Identities=18% Similarity=-0.069 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCC------HHHHHHHHHHHhcCCCCc
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGD------PDAQYELGCRLRVENDYV 139 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~------~~A~~~Lg~~y~~g~~~~ 139 (282)
++.+.|++.|.+++..-|..+.++++-+..+... .+.++|+.-+.+|.+... -.|+..-|.+|...++-
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq----~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d- 131 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQ----GDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND- 131 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHc----CChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch-
Confidence 5699999999999999999999999999999865 466999999999997632 24677778888874444
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023425 140 QSDQQAFYYIEKAVDQLHPGALYLLG 165 (282)
Q Consensus 140 ~d~~~A~~~~~kAa~~g~~~A~~~Lg 165 (282)
+.|..-|+.|++.|.+-|.-.|-
T Consensus 132 ---d~AR~DFe~AA~LGS~FAr~QLV 154 (175)
T KOG4555|consen 132 ---DAARADFEAAAQLGSKFAREQLV 154 (175)
T ss_pred ---HHHHHhHHHHHHhCCHHHHHHHH
Confidence 99999999999999987765553
No 175
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.02 E-value=0.0052 Score=49.33 Aligned_cols=100 Identities=23% Similarity=0.113 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC------CccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcc
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDC------VKKDIASALWCFHRASE--KGHAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g------~~~d~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~ 212 (282)
+.|.+.++..... .+++++++.|..+++-.. ...-+++|+.=|+.|+. .....|+++||..|..--....
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 4555555554443 467777777766665211 11224455566666644 4678999999999987433455
Q ss_pred cHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhccHHHHHH
Q 023425 213 CLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNLGLRW 261 (282)
Q Consensus 213 ~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g~~~a~~~ 261 (282)
+..+|..+| ++|..+|++|.+..+....|+
T Consensus 88 d~~~A~~~F-------------------~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 88 DTAEAEEYF-------------------EKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp -HHHHHHHH-------------------HHHHHHHHHHHHH-TT-HHHH
T ss_pred ChHHHHHHH-------------------HHHHHHHHHHHhcCCCcHHHH
Confidence 666777777 567777777777765555544
No 176
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.00 E-value=0.064 Score=47.76 Aligned_cols=139 Identities=19% Similarity=0.189 Sum_probs=83.5
Q ss_pred HHhhcCCCchhhHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh------CCCHH
Q 023425 56 YCELNDRRLIPLLKTAKENFELALEADNSNTH------ARYWLSKLHLKYHVPGACKAMGAALLVDAAN------MGDPD 123 (282)
Q Consensus 56 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~------a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~------~g~~~ 123 (282)
...++.+--..-+++++..|++|........+ .+..||.++-.. +|+++|.-+..+|++ .++..
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l----~D~~Kal~f~~kA~~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL----KDYEKALFFPCKAAELVNSYGLKDWS 201 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH----HhhhHHhhhhHhHHHHHHhcCcCchh
Confidence 33444455556688888888888764333332 455677776654 677888888777765 24544
Q ss_pred H------HHHHHHHHhcCCCCcCCHHHHHHHHHHHHH----cCC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 124 A------QYELGCRLRVENDYVQSDQQAFYYIEKAVD----QLH----PGALYLLGTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 124 A------~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~----~g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
+ .+.++..+...+.. -.|.++-+.|.+ .|+ +.++.-+|.+|.. .+|.+.|+.-|++|.
T Consensus 202 ~kyr~~~lyhmaValR~~G~L----gdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~----~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRL----GDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS----RGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh----cccHhHHHHHHHHHH
Confidence 4 34444444443333 445555544433 353 5566778888888 788888888888773
Q ss_pred H----c----CCHHHHHHHHHHHHc
Q 023425 190 E----K----GHAGAAIAYGSLLLR 206 (282)
Q Consensus 190 ~----~----g~~~a~~~Lg~~y~~ 206 (282)
. . |..+++-..+.+...
T Consensus 274 ~~m~~~gdrmgqv~al~g~Akc~~~ 298 (518)
T KOG1941|consen 274 GTMASLGDRMGQVEALDGAAKCLET 298 (518)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 2 2 335556666666654
No 177
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.99 E-value=0.022 Score=52.62 Aligned_cols=123 Identities=16% Similarity=0.105 Sum_probs=76.9
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Q 023425 32 RNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAA 111 (282)
Q Consensus 32 ~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~ 111 (282)
..+.|.+.+.++|+ .+|..+-++.-++|++.+|+++.|+..|+.=.. ....++..
T Consensus 167 ~~r~Aq~IMq~AWR-------------------ERnp~aRIkaA~eALei~pdCAdAYILLAEEeA------~Ti~Eae~ 221 (539)
T PF04184_consen 167 ALRPAQEIMQKAWR-------------------ERNPQARIKAAKEALEINPDCADAYILLAEEEA------STIVEAEE 221 (539)
T ss_pred ccCHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc------cCHHHHHH
Confidence 34577778888876 345788888899999999999999988776322 34588999
Q ss_pred HHHHHHhCCC---------------------------HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCHHH
Q 023425 112 LLVDAANMGD---------------------------PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LHPGA 160 (282)
Q Consensus 112 ~~~~Aa~~g~---------------------------~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~~~A 160 (282)
+|++|.+.|. +-+-..||++..+-++. ++|++.|+.-.+. .+...
T Consensus 222 l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~----~EAIk~~rdLlke~p~~~~l~I 297 (539)
T PF04184_consen 222 LLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRL----REAIKMFRDLLKEFPNLDNLNI 297 (539)
T ss_pred HHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCCh----HHHHHHHHHHHhhCCccchhhH
Confidence 9999876331 11233445554444444 5555555555542 23334
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHH
Q 023425 161 LYLLGTVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 161 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
..+|-.+++. .+.+.++...+.+
T Consensus 298 renLie~LLe----lq~Yad~q~lL~k 320 (539)
T PF04184_consen 298 RENLIEALLE----LQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHHHh----cCCHHHHHHHHHH
Confidence 4555555555 5555555555544
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.96 E-value=0.0026 Score=42.46 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 141 SDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 141 d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
++++|+.+|+++... +++++.+.|+.+|.. .+++++|..+++++...
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLK----QGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH----TT-HHHHHHHHHCCHGG
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 446666666666554 566666666666666 56666666666665554
No 179
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.016 Score=49.52 Aligned_cols=89 Identities=19% Similarity=0.190 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-----CCH
Q 023425 125 QYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-----LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-----GHA 194 (282)
Q Consensus 125 ~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-----g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----g~~ 194 (282)
.|+.+.-++. ..|+..|..-|..-++. --+.|+|+||.+++. .+|++.|...|...+.. .-|
T Consensus 144 ~Y~~A~~~~k----sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 144 LYNAALDLYK----SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCCCCCCh
Confidence 6777766666 44558999999988887 248999999999999 99999999999998874 348
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 195 GAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 195 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
++++.||.+... .++.++|...++..+
T Consensus 216 dallKlg~~~~~----l~~~d~A~atl~qv~ 242 (262)
T COG1729 216 DALLKLGVSLGR----LGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHH
Confidence 899999999887 666655544444443
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.87 E-value=0.0043 Score=41.98 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 139 VQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
.+++++|+.++++++.. .++..++..|.+|.. .+++.+|+..|+++++..
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQ----LGRYEEALEDLERALELS 59 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH----hccHHHHHHHHHHHHHHC
Confidence 44557777777777665 466666777777777 677777777777776653
No 181
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.86 E-value=0.02 Score=51.25 Aligned_cols=114 Identities=13% Similarity=-0.107 Sum_probs=85.2
Q ss_pred CCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCc
Q 023425 62 RRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYV 139 (282)
Q Consensus 62 ~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~ 139 (282)
....++.++|.++.+.++. ...++.-+-.++. ..+.|...=++..++.+. +.+|..+..||.+++. .
T Consensus 273 li~l~~~~~A~~~i~~~Lk-~~~D~~L~~~~~~------l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k----~ 341 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALK-RQWDPRLCRLIPR------LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK----N 341 (400)
T ss_pred HHHcCChHHHHHHHHHHHH-hccChhHHHHHhh------cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH----h
Confidence 3345678999999999985 3466662222222 233555666666666663 4678999999999998 6
Q ss_pred CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 140 QSDQQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 140 ~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
+.+.+|-.+|+.|+.. -+...+..+|..|.. .+++.+|-..++.+.-
T Consensus 342 ~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~----~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 342 KLWGKASEALEAALKLRPSASDYAELADALDQ----LGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHH
Confidence 6779999999999887 477888889999999 8999999999988863
No 182
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.81 E-value=0.0062 Score=53.39 Aligned_cols=127 Identities=16% Similarity=0.061 Sum_probs=81.0
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc---CCCCcC
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRV---ENDYVQ 140 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~---g~~~~~ 140 (282)
..+++++|++.+.+. ++.++....-.+|... .+.+.|.+.++..-+.++-.....|+..+.. |+ .
T Consensus 114 ~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~----~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~---e 181 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG-----GSLELLALAVQILLKM----NRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG---E 181 (290)
T ss_dssp CCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHT----T-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT---T
T ss_pred HcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc---h
Confidence 346677777666554 4666666666666655 3447777777777666655555555543322 22 2
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 141 SDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 141 d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
.+++|+..|+..++. ..+..+..++.++.. .+++++|...+++|.+. +++.+..|+..+...
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH 247 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 237788888887766 355666677777777 78888888888887654 467777777776554
No 183
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.79 E-value=0.0012 Score=40.27 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSK 94 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~ 94 (282)
.+++++|+++|+++++.+|+++.++..||.
T Consensus 14 ~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 14 LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345788888888888888888888777765
No 184
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.023 Score=51.02 Aligned_cols=113 Identities=16% Similarity=0.035 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHHHcCC---------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHH
Q 023425 66 PLLKTAKENFELALEADN---------------SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYEL 128 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~---------------g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~L 128 (282)
+++..|..-|++|+..=. ---.++.||+.++... .++.+|+.+..+++ +++|+.|+|.-
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl----~~~~~Ai~~c~kvLe~~~~N~KALyRr 297 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKL----KEYKEAIESCNKVLELDPNNVKALYRR 297 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhh----hhHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 347777777777764110 1233678899999877 67799999999997 56899999999
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccC-HHHHHHHHHHHHH
Q 023425 129 GCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKD-IASALWCFHRASE 190 (282)
Q Consensus 129 g~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d-~~~A~~~~~~A~~ 190 (282)
|..+...+.+ +.|+..|+++++. .+..+...|..|-.. .++ .++..+.|.....
T Consensus 298 G~A~l~~~e~----~~A~~df~ka~k~~P~Nka~~~el~~l~~k----~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 298 GQALLALGEY----DLARDDFQKALKLEPSNKAARAELIKLKQK----IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHhhccH----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 9999995555 9999999999987 678888888877554 222 2333556655543
No 185
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.72 E-value=0.22 Score=39.60 Aligned_cols=175 Identities=23% Similarity=0.094 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHH-HHhcCCCCcC
Q 023425 66 PLLKTAKENFELALE--ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGC-RLRVENDYVQ 140 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~--~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~-~y~~g~~~~~ 140 (282)
+++..+...+..+.. ..+.....++.+|..+... .++..++..+.++... .........+. ++.. ..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 144 (291)
T COG0457 73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEAL----GKYEEALELLEKALALDPDPDLAEALLALGALYE----LG 144 (291)
T ss_pred ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH----hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH----cC
Confidence 345666666666654 4555666666666665543 2346666666666642 22233333333 4555 33
Q ss_pred CHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcc
Q 023425 141 SDQQAFYYIEKAVDQL-----HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG---HAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 141 d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~ 212 (282)
+.+.|..+|.++.... .......++..+.. .++++.|+..+.++.... .......++..+.. ..
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 216 (291)
T COG0457 145 DYEEALELYEKALELDPELNELAEALLALGALLEA----LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK----LG 216 (291)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH----cc
Confidence 3366666666665531 23444444444444 556666666666665542 24556666666665 34
Q ss_pred cHHHHHHHHHHHHHHH------chhch--hccCCCHHHHHHHHHHHHHhccH
Q 023425 213 CLTKLNAKRVSAAKKA------RANLE--SNLMNPVEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 213 ~~~~A~~~~~~a~~~a------~~~lg--~~~~~~~~~A~~~~~~Aa~~g~~ 256 (282)
++..|...+..+.... ...++ ....++...+...+.++......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 5666666666665521 12222 11334566777777777665543
No 186
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.71 E-value=0.36 Score=43.68 Aligned_cols=107 Identities=12% Similarity=-0.015 Sum_probs=60.3
Q ss_pred CCCchhhHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh---CCCHHHHHHHHHHHh
Q 023425 61 DRRLIPLLKTAKENFELALEA----DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN---MGDPDAQYELGCRLR 133 (282)
Q Consensus 61 ~~~~~~~~~~A~~~~~~a~~~----~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~---~g~~~A~~~Lg~~y~ 133 (282)
.+.-..|++..++..+..-.. -+..+...+.++..+...+. ++|.++|..++..+.. ..+++.+..+|.+|.
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~-~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNK-PGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhccc-CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 344456677777666665433 22345556666666665332 4677777777777543 236777777777764
Q ss_pred c----C-CCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 023425 134 V----E-NDYVQSDQQAFYYIEKAVDQL-HPGALYLLGTVY 168 (282)
Q Consensus 134 ~----g-~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y 168 (282)
+ . ..-....++|+.||.++.+.. +...=.|++.++
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL 269 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLL 269 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHH
Confidence 3 1 111233577777777777663 333334444443
No 187
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.71 E-value=0.25 Score=43.90 Aligned_cols=168 Identities=13% Similarity=0.008 Sum_probs=118.6
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+.+..|+.-|..++...+.. ....|..+..+...+.-.-|+.-+.+.+++.|+...|-..-|.++... ..++.|
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~-Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~----Gele~A 125 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNN-YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ----GELEQA 125 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc----ccHHHH
Confidence 667888888888887744433 333333334444445566778888889999999999999999998866 456999
Q ss_pred HHHHHHHHhCC-----CHHHHHHHHHHHhcC--------CCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCC
Q 023425 110 AALLVDAANMG-----DPDAQYELGCRLRVE--------NDYVQSDQQAFYYIEKAVDQL--HPGALYLLGTVYLTGDCV 174 (282)
Q Consensus 110 ~~~~~~Aa~~g-----~~~A~~~Lg~~y~~g--------~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~g~g~ 174 (282)
+.=|.+.++.. ..+++..|+.+-... .....|+..|+.+....++.. +++-...-+.||..
T Consensus 126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~---- 201 (504)
T KOG0624|consen 126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA---- 201 (504)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh----
Confidence 99999988542 345666665442110 011345588888888888874 34444556788888
Q ss_pred ccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc
Q 023425 175 KKDIASALWCFHRASE--KGHAGAAIAYGSLLLR 206 (282)
Q Consensus 175 ~~d~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~ 206 (282)
.+++.+|++=++.+.. +++.+++|.++.++++
T Consensus 202 ~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT 235 (504)
T ss_pred cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence 8899999999999866 4678889999888876
No 188
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.69 E-value=0.0041 Score=37.94 Aligned_cols=40 Identities=20% Similarity=0.063 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGS 202 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~ 202 (282)
.+++.||..|.. .+++++|+.+|+++++. +++.++..||.
T Consensus 2 ~~~~~la~~~~~----~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRR----LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456666666666 66777777777776554 45666666654
No 189
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.64 E-value=0.081 Score=50.24 Aligned_cols=110 Identities=12% Similarity=-0.058 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+.+.+.++..+..+.-.|.|++..-..|..+... .+.++|..+-+.++. .++.-.|..+|.++.. .++++
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~l----g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~----dK~Y~ 92 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCL----GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS----DKKYD 92 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcc----cchHHHHHHHHHHhccCcccchhHHHHHHHHhh----hhhHH
Confidence 3477888888888888889999988888877644 456889888888874 4577788889999888 66679
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
+|++||+.|... ++.+-+..|+.+-.. .+|++-.+.--.+
T Consensus 93 eaiKcy~nAl~~~~dN~qilrDlslLQ~Q----mRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 93 EAIKCYRNALKIEKDNLQILRDLSLLQIQ----MRDYEGYLETRNQ 134 (700)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHH----HHhhhhHHHHHHH
Confidence 999999999887 678888888877666 6666655443333
No 190
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.55 E-value=0.11 Score=46.43 Aligned_cols=150 Identities=13% Similarity=0.156 Sum_probs=101.5
Q ss_pred CCCchhhHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh----CCCH----HHHHH
Q 023425 61 DRRLIPLLKTAKENFELALEADNSNT-----HARYWLSKLHLKYHVPGACKAMGAALLVDAAN----MGDP----DAQYE 127 (282)
Q Consensus 61 ~~~~~~~~~~A~~~~~~a~~~~~g~~-----~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~----~g~~----~A~~~ 127 (282)
......++.+++.+-+-.++...-++ .+...+|..+... .-.+++++.|++|.+ .+|+ .-+..
T Consensus 92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgl----s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGL----SVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhH----HHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 33344556677666666654322222 2444455555533 345899999999864 2333 46778
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc------CC------HHHHHHHHHHHhcCCCCccCHHHHHHHHHHH----HHc
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ------LH------PGALYLLGTVYLTGDCVKKDIASALWCFHRA----SEK 191 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~------g~------~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A----~~~ 191 (282)
||.+|-. .+|+++|+-+..+|++. ++ .-+++.|+..+.. .+..-.|.++.+.| ++.
T Consensus 168 Lgslf~~----l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~----~G~LgdA~e~C~Ea~klal~~ 239 (518)
T KOG1941|consen 168 LGSLFAQ----LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL----LGRLGDAMECCEEAMKLALQH 239 (518)
T ss_pred HHHHHHH----HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH----hcccccHHHHHHHHHHHHHHh
Confidence 8888877 77889999999999885 33 3455666766666 55555566655554 556
Q ss_pred CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 192 GH----AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 192 g~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
|+ +..+.-+|.+|.. ..|.+.|+.-|+.|..
T Consensus 240 Gdra~~arc~~~~aDIyR~----~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 240 GDRALQARCLLCFADIYRS----RGDLERAFRRYEQAMG 274 (518)
T ss_pred CChHHHHHHHHHHHHHHHh----cccHhHHHHHHHHHHH
Confidence 75 5678889999998 8899999999999875
No 191
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.34 E-value=0.0084 Score=33.89 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+.+++.+|.+|.. .+++++|+++|++|+..
T Consensus 1 a~~~~~lg~~~~~----~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ----LGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence 4567777888777 77888888888877654
No 192
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.32 E-value=0.0087 Score=33.99 Aligned_cols=29 Identities=38% Similarity=0.493 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.+++++|.+|.. .+++++|+.+|++|++.
T Consensus 2 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQ----LGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCchHHHHHHHHHHHH
Confidence 466667777776 67777777777776654
No 193
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.32 E-value=0.0036 Score=35.97 Aligned_cols=15 Identities=13% Similarity=0.045 Sum_probs=6.7
Q ss_pred CCHHHHHHHHHHHhc
Q 023425 120 GDPDAQYELGCRLRV 134 (282)
Q Consensus 120 g~~~A~~~Lg~~y~~ 134 (282)
++++++++||.+|..
T Consensus 11 ~n~~a~~nla~~~~~ 25 (34)
T PF13431_consen 11 NNAEAYNNLANLYLN 25 (34)
T ss_pred CCHHHHHHHHHHHHH
Confidence 344444444444444
No 194
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=0.78 Score=38.93 Aligned_cols=188 Identities=15% Similarity=0.054 Sum_probs=105.9
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC---CCcCH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV---PGACK 106 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~---~~~~~ 106 (282)
+-+++.|-+.|.++.... ...++|++|...+.+|++.. .+-.++|.-+..|+...- .-..+
T Consensus 24 kad~dgaas~yekAAvaf---------------RnAk~feKakdcLlkA~~~y-EnnrslfhAAKayEqaamLake~~kl 87 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAF---------------RNAKKFEKAKDCLLKASKGY-ENNRSLFHAAKAYEQAAMLAKELSKL 87 (308)
T ss_pred CCCchhhHHHHHHHHHHH---------------HhhccHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 334566666666654322 22345899999999998533 233345544444432211 11456
Q ss_pred HHHHHHHHHHH----hCCCHHHH-HHH---HHHHhcCCCCcCCHHHHHHHHHHHHHc---CC-----HHHHHHHHHHHhc
Q 023425 107 AMGAALLVDAA----NMGDPDAQ-YEL---GCRLRVENDYVQSDQQAFYYIEKAVDQ---LH-----PGALYLLGTVYLT 170 (282)
Q Consensus 107 ~~A~~~~~~Aa----~~g~~~A~-~~L---g~~y~~g~~~~~d~~~A~~~~~kAa~~---g~-----~~A~~~Lg~~y~~ 170 (282)
.+++.+|++|+ +.|.|+.. -.| |.++. ..++++|+++|++++.. ++ .+-.-..+.+|..
T Consensus 88 sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le-----nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 88 SEVVDLYEKASELYVECGSPDTAAMALEKAAKALE-----NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-----cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 89999999996 45766532 223 33333 45679999999999874 21 1222334455555
Q ss_pred CCCCccCHHHHHHHHHHHH-------HcCCH-HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH----------ch-h
Q 023425 171 GDCVKKDIASALWCFHRAS-------EKGHA-GAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA----------RA-N 231 (282)
Q Consensus 171 g~g~~~d~~~A~~~~~~A~-------~~g~~-~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a----------~~-~ 231 (282)
.+.+.+|-..+.+-. ..+++ .+....-.+|.. ..|+..|...|+...+.. .. -
T Consensus 163 ----l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~----~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 163 ----LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY----AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred ----hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh----HHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 566777766666531 11221 233333344444 678888988888866521 11 2
Q ss_pred chhccCCCHHHHHHH
Q 023425 232 LESNLMNPVEKAKEQ 246 (282)
Q Consensus 232 lg~~~~~~~~~A~~~ 246 (282)
|+....+|.++....
T Consensus 235 L~ayd~gD~E~~~kv 249 (308)
T KOG1585|consen 235 LTAYDEGDIEEIKKV 249 (308)
T ss_pred HHHhccCCHHHHHHH
Confidence 334466666665543
No 195
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.02 E-value=0.013 Score=34.05 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 160 ALYLLGTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 160 A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
|+.+||.+|.. .+++++|+++|++++
T Consensus 1 al~~Lg~~~~~----~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQ----QGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHH----CT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 45677777777 777777777777754
No 196
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.98 E-value=0.5 Score=44.39 Aligned_cols=150 Identities=12% Similarity=0.031 Sum_probs=94.3
Q ss_pred cccchHHHHHHHHHHhhhhh---HHHH---HHHHHhh-cCCC---chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc
Q 023425 29 LHSRNKKAMELIAKGWSALK---EVDR---VIDYCEL-NDRR---LIPLLKTAKENFELALEADNSNTHARYWLSKLHLK 98 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~---~~~~---~~~~~~~-~~~~---~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~ 98 (282)
.+++-+.++..+..+.+... .... ..++... ...+ ...+.+.|.+.+....+.-|+.+--.+.-|.++..
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 37888888888887765222 1111 1111110 0111 45677888888888877777777777777888775
Q ss_pred CCCCCcCHHHHHHHHHHHHhCC------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHH--HHHHHHHh
Q 023425 99 YHVPGACKAMGAALLVDAANMG------DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-LHPGAL--YLLGTVYL 169 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-g~~~A~--~~Lg~~y~ 169 (282)
. .+.++|+.+|.++++.. +.-..+.+|-++.. ..|+++|..+|.+..+. ....|. |..|.|+.
T Consensus 280 ~----g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~----~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 280 K----GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF----QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL 351 (468)
T ss_pred h----cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4 56688888888887432 12345566666665 56668888888888776 333443 44666666
Q ss_pred cCCCCccCH-------HHHHHHHHHHHH
Q 023425 170 TGDCVKKDI-------ASALWCFHRASE 190 (282)
Q Consensus 170 ~g~g~~~d~-------~~A~~~~~~A~~ 190 (282)
. .++. ++|.++|+++-.
T Consensus 352 ~----l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 352 M----LGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred h----hccchhhhhhHHHHHHHHHHHHH
Confidence 5 4444 777777777644
No 197
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.96 E-value=0.054 Score=49.96 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH---hCCC--------HHHHHHHHHHHhc
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA---NMGD--------PDAQYELGCRLRV 134 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa---~~g~--------~~A~~~Lg~~y~~ 134 (282)
.+...+..--+-++....+.+.+.+.-...++-. +++.+|.+.+..+- ++|. --++.|||.+++.
T Consensus 220 ~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~----gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~ 295 (696)
T KOG2471|consen 220 RNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAH----GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ 295 (696)
T ss_pred HHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHh----cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee
Confidence 3444444444555555567777777767766533 57799998888762 4451 1245789988888
Q ss_pred CCCCcCCHHHHHHHHHHHHH-------c-------------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--C
Q 023425 135 ENDYVQSDQQAFYYIEKAVD-------Q-------------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--G 192 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~-------~-------------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g 192 (282)
-+.+ +.+..+|.+|.+ . ...+-.|+.|..|+. .+++-.|++||.+|+.. .
T Consensus 296 ~~~y----~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh----~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 296 LGCY----QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH----SGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred hhhH----HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh----cCCcHHHHHHHHHHHHHHhc
Confidence 5555 889999999985 1 235778999999999 89999999999999885 6
Q ss_pred CHHHHHHHHHHHH
Q 023425 193 HAGAAIAYGSLLL 205 (282)
Q Consensus 193 ~~~a~~~Lg~~y~ 205 (282)
+|.-|.+|+.|..
T Consensus 368 nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 368 NPRLWLRLAECCI 380 (696)
T ss_pred CcHHHHHHHHHHH
Confidence 7999999998876
No 198
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.96 E-value=0.063 Score=47.09 Aligned_cols=142 Identities=13% Similarity=0.072 Sum_probs=91.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|+..+.++ ..+.-..-.+.... ..++++.|.+.++..-+.+++..-.....+.+....++ ..+.+|
T Consensus 115 ~~~~~~AL~~l~~~-~~lE~~al~Vqi~L-----~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~--e~~~~A 186 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-GSLELLALAVQILL-----KMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG--EKYQDA 186 (290)
T ss_dssp CCHHHHHHCCCTTT-TCHHHHHHHHHHHH-----HTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT--TCCCHH
T ss_pred cCCHHHHHHHHHcc-CcccHHHHHHHHHH-----HcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc--hhHHHH
Confidence 56788888877765 21221111111111 13458999999999987766554444444444332222 456999
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCH-HHHHHH
Q 023425 110 AALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDI-ASALWC 184 (282)
Q Consensus 110 ~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~-~~A~~~ 184 (282)
+..|+.-.+. ..+.....++.++...++ +++|...+++|.+. +++++..++..+... .++. +.+.++
T Consensus 187 ~y~f~El~~~~~~t~~~lng~A~~~l~~~~----~~eAe~~L~~al~~~~~~~d~LaNliv~~~~----~gk~~~~~~~~ 258 (290)
T PF04733_consen 187 FYIFEELSDKFGSTPKLLNGLAVCHLQLGH----YEEAEELLEEALEKDPNDPDTLANLIVCSLH----LGKPTEAAERY 258 (290)
T ss_dssp HHHHHHHHCCS--SHHHHHHHHHHHHHCT-----HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH----TT-TCHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHH----hCCChhHHHHH
Confidence 9999998865 356777788889988444 49999999999876 789999999988766 4444 344445
Q ss_pred HHH
Q 023425 185 FHR 187 (282)
Q Consensus 185 ~~~ 187 (282)
+.+
T Consensus 259 l~q 261 (290)
T PF04733_consen 259 LSQ 261 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 199
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.94 E-value=0.27 Score=46.67 Aligned_cols=124 Identities=14% Similarity=0.021 Sum_probs=91.2
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHH--HHHHHHHHH
Q 023425 55 DYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPD--AQYELGCRL 132 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y 132 (282)
.+.....+...+++++|+.+..+||+..|..++.++.-|.++... ++..+|..++..|-+++-.+ .-...+..+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~----G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA----GDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 333334444567899999999999999999999999999999977 57799999999998776444 334456666
Q ss_pred hcCCCCcCCHHHHHHHHHHHHHcC-C-------HHHH---HHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 133 RVENDYVQSDQQAFYYIEKAVDQL-H-------PGAL---YLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 133 ~~g~~~~~d~~~A~~~~~kAa~~g-~-------~~A~---~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
++-+.+ ++|......-.+.+ + .+++ ..-|..|.. .+++..|++.|.....
T Consensus 273 LRa~~~----e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r----~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRI----EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR----QGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCH----HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Confidence 664444 77877776665543 1 2233 335777887 7888899888887644
No 200
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.92 E-value=0.84 Score=38.13 Aligned_cols=157 Identities=13% Similarity=-0.037 Sum_probs=90.7
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHH
Q 023425 53 VIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGC 130 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~ 130 (282)
.+....|...-..+|++.|.+.|....|+||++.-|..+-|..+..++. ++-|.+-+.+-- ++.+|---..|-.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR----~~LAq~d~~~fYQ~D~~DPfR~LWLYl 175 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR----YKLAQDDLLAFYQDDPNDPFRSLWLYL 175 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCc----hHhhHHHHHHHHhcCCCChHHHHHHHH
Confidence 3334444455556889999999999999999999999999988777644 466666555554 3444433323221
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHhcCCCCccCHHHHHHHHHHHHHc------CCHHHHHHHHHH
Q 023425 131 RLRVENDYVQSDQQAFYYIEKAVDQLHPGAL-YLLGTVYLTGDCVKKDIASALWCFHRASEK------GHAGAAIAYGSL 203 (282)
Q Consensus 131 ~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~-~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------g~~~a~~~Lg~~ 203 (282)
.+. .-|+++|..-+.+=++.-+.+-+ ++|-..|+... ..+...+-...-+.. --.+++|.||..
T Consensus 176 --~E~---k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgki----S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 176 --NEQ---KLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKI----SEETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred --HHh---hCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhc----cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 111 33556666655555544332222 22223333211 111111111111111 125678888888
Q ss_pred HHcCCCCcccHHHHHHHHHHHHH
Q 023425 204 LLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 204 y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
|.. .++...|...|+-|+.
T Consensus 247 ~l~----~G~~~~A~~LfKLaia 265 (297)
T COG4785 247 YLS----LGDLDEATALFKLAVA 265 (297)
T ss_pred Hhc----cccHHHHHHHHHHHHH
Confidence 887 7888888888888876
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.77 E-value=0.86 Score=37.17 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh---CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCH
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAAN---MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LHP 158 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~---~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~~ 158 (282)
..-.+.||..+... .++.+|...|.+|+. .+++.-+..|+...+. .++...|...+++.-+- ..|
T Consensus 89 vqnr~rLa~al~el----Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa----~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 89 VQNRYRLANALAEL----GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA----IQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHHHHHHHHHHHh----hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh----hccHHHHHHHHHHHhhcCCccCCC
Confidence 34466788887765 467999999999985 4778888888888777 45558999999888775 468
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-HHchhchhcc
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK-GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK-KARANLESNL 236 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~a~~~lg~~~ 236 (282)
+.+..+|..|.. .+.+.+|..-|+.+++. ..+.+-...+.++..-.....+...+....+.+.. ..++.
T Consensus 161 d~~Ll~aR~laa----~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r----- 231 (251)
T COG4700 161 DGHLLFARTLAA----QGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR----- 231 (251)
T ss_pred CchHHHHHHHHh----cCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHH-----
Confidence 889999999998 78899999999999875 56788888888888732233333333334433332 22322
Q ss_pred CCCHHHHHHHHHHHHHh
Q 023425 237 MNPVEKAKEQFEVAAQA 253 (282)
Q Consensus 237 ~~~~~~A~~~~~~Aa~~ 253 (282)
+.+.+|.+.|.+.
T Consensus 232 ----kh~reW~~~A~~~ 244 (251)
T COG4700 232 ----KHHREWIKTANER 244 (251)
T ss_pred ----HHHHHHHHHHHHH
Confidence 5677787777543
No 202
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.73 E-value=3.2 Score=43.43 Aligned_cols=188 Identities=10% Similarity=-0.023 Sum_probs=122.7
Q ss_pred CCCchhhHHHHHHHHHHHHHcC-C-------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCH-HHHHHHHHH
Q 023425 61 DRRLIPLLKTAKENFELALEAD-N-------SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDP-DAQYELGCR 131 (282)
Q Consensus 61 ~~~~~~~~~~A~~~~~~a~~~~-~-------g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~-~A~~~Lg~~ 131 (282)
.+....++++|.+.+++|+..- + +--.|+.||=++|- ..+.-.+.|++|++-.++ .-+..|..+
T Consensus 1467 f~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG-------~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1467 FHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG-------TEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred HHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-------cHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4445677999999999998521 1 11224444444442 447777899999987654 567778889
Q ss_pred HhcCCCCcCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 023425 132 LRVENDYVQSDQQAFYYIEKAVDQ-L-HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GHAGAAIAYGSLLL 205 (282)
Q Consensus 132 y~~g~~~~~d~~~A~~~~~kAa~~-g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~~~a~~~Lg~~y~ 205 (282)
|...... ++|.++|+.-++. + ....|..+|..++. ..+-+.|...+.+|+.- .+.+-.-.-+.+-+
T Consensus 1540 y~k~ek~----~~A~ell~~m~KKF~q~~~vW~~y~~fLl~----~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1540 YEKSEKN----DEADELLRLMLKKFGQTRKVWIMYADFLLR----QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHhhcc----hhHHHHHHHHHHHhcchhhHHHHHHHHHhc----ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 9886666 8999999998876 5 67778888888887 55557788888888763 35555555555555
Q ss_pred cCCCCcccHHHHHHHHHHHHH------HHchhch--hccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHH
Q 023425 206 RGVQVPECLTKLNAKRVSAAK------KARANLE--SNLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEE 267 (282)
Q Consensus 206 ~g~g~~~~~~~A~~~~~~a~~------~a~~~lg--~~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~ 267 (282)
+ -+|.+.+...|+--.. .-|.-.- .+..++.+-.+..|++++..+ ...+.+.+.+..+
T Consensus 1612 k----~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1612 K----YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred h----cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 5 4566665555554443 2232222 235567788888899998887 3334444444443
No 203
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.45 E-value=1 Score=41.82 Aligned_cols=180 Identities=15% Similarity=0.068 Sum_probs=115.5
Q ss_pred hhhhhhhHHhhhhhhhcchh----------hhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHH
Q 023425 5 ISKASTLKSAALGLLQSNQH----------QKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKEN 74 (282)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 74 (282)
...+.+++.++|.|..-..= ..-..+.+...|...+..++...+.......|... .-..++++.-.++
T Consensus 382 ~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIel--ElqL~efDRcRkL 459 (677)
T KOG1915|consen 382 VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIEL--ELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHH--HHHHhhHHHHHHH
Confidence 34556667666665443321 11112456677888888777655543333233221 1124679999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH
Q 023425 75 FELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 75 ~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~ 154 (282)
|++-++-.|.+..++...|.+-... .|.+.|...|+.|+++...+.=-.|=..|.+-.-.....++|..+|++-.+
T Consensus 460 YEkfle~~Pe~c~~W~kyaElE~~L----gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 460 YEKFLEFSPENCYAWSKYAELETSL----GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHhcChHhhHHHHHHHHHHHHh----hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 9999999999999999888887655 566899999999997654444334444444333234456999999999998
Q ss_pred c-CCHHHHHHHHHHHhcC-CC-----------CccCHHHHHHHHHHHHH
Q 023425 155 Q-LHPGALYLLGTVYLTG-DC-----------VKKDIASALWCFHRASE 190 (282)
Q Consensus 155 ~-g~~~A~~~Lg~~y~~g-~g-----------~~~d~~~A~~~~~~A~~ 190 (282)
. .|...+...+..=..- .+ ++.+...|...|+.|..
T Consensus 536 rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 536 RTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 7 6777666665543311 11 23367788888888854
No 204
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.38 E-value=1.1 Score=42.03 Aligned_cols=118 Identities=16% Similarity=0.045 Sum_probs=63.9
Q ss_pred CcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHhcCCCC
Q 023425 103 GACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL------HPGALYLLGTVYLTGDCV 174 (282)
Q Consensus 103 ~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g------~~~A~~~Lg~~y~~g~g~ 174 (282)
+.+.+.|...+....+ ++.+--.+.-|.++.. ..|.++|+.+|+++.... +.-+.+.+|.++.-
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~----~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~---- 317 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL----KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF---- 317 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----
Confidence 4455666666666655 4555555556666665 333477777777666421 23445666666666
Q ss_pred ccCHHHHHHHHHHHHHcC-CHHH--HHHHHHHHHcCCC---CcccHHHHHHHHHHHHHHH
Q 023425 175 KKDIASALWCFHRASEKG-HAGA--AIAYGSLLLRGVQ---VPECLTKLNAKRVSAAKKA 228 (282)
Q Consensus 175 ~~d~~~A~~~~~~A~~~g-~~~a--~~~Lg~~y~~g~g---~~~~~~~A~~~~~~a~~~a 228 (282)
..|+++|.++|.+-.+.. ...+ .|..|.|+..-.. .+...++|..+++++....
T Consensus 318 ~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 667777777777666543 2222 3444455444111 1222356666666665533
No 205
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.37 E-value=0.48 Score=45.36 Aligned_cols=135 Identities=8% Similarity=0.004 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcC---CCCcCCHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVE---NDYVQSDQQ 144 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g---~~~~~d~~~ 144 (282)
++.-...|.+.+++.--.|..-.|.+..+... .-.+++++.|++.+..=.++-.+.+=..|+.. .-.....+.
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh----~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEH----KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 44444555555555555555555666655543 23366666666665442222222222222210 000112366
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023425 145 AFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLR 206 (282)
Q Consensus 145 A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~ 206 (282)
|..+|++|.+.=.|...-.+-.+|..-...-|--..|+..|++|...-.....+.+-.+|..
T Consensus 569 aRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 569 ARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66777777664223333223222222111123445566666666666555555555555543
No 206
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.36 E-value=0.038 Score=31.16 Aligned_cols=28 Identities=39% Similarity=0.499 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
.+++.+|.+|.. .+++++|+++|+++++
T Consensus 2 ~~~~~lg~~y~~----~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQ----LGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHH----TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 456677777777 7777777777777765
No 207
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.33 E-value=1.1 Score=35.42 Aligned_cols=149 Identities=23% Similarity=0.159 Sum_probs=70.3
Q ss_pred CCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHhcCCCCCcCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcC
Q 023425 62 RRLIPLLKTAKENFELALEADNSNTHARYWLSK-LHLKYHVPGACKAMGAALLVDAANMG-----DPDAQYELGCRLRVE 135 (282)
Q Consensus 62 ~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~-~~~~~~~~~~~~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~g 135 (282)
....+++.+++..+.+++...+.+.......+. ++... .+.+.|...|.++.... .......++..+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 179 (291)
T COG0457 105 LEALGKYEEALELLEKALALDPDPDLAEALLALGALYEL----GDYEEALELYEKALELDPELNELAEALLALGALLEA- 179 (291)
T ss_pred HHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH-
Confidence 333444555555666655544444333333333 33322 34456666666654421 12233333333222
Q ss_pred CCCcCCHHHHHHHHHHHHHc--C-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCCC
Q 023425 136 NDYVQSDQQAFYYIEKAVDQ--L-HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH--AGAAIAYGSLLLRGVQV 210 (282)
Q Consensus 136 ~~~~~d~~~A~~~~~kAa~~--g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~--~~a~~~Lg~~y~~g~g~ 210 (282)
..+.+.|+..+.++... . .......++..+.. .+++.+|+..+.++..... ......++..+..
T Consensus 180 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 248 (291)
T COG0457 180 ---LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK----LGKYEEALEYYEKALELDPDNAEALYNLALLLLE---- 248 (291)
T ss_pred ---hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH----cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH----
Confidence 22335666666665554 2 24555555555555 4455666666666555433 3445555555542
Q ss_pred cccHHHHHHHHHHHHH
Q 023425 211 PECLTKLNAKRVSAAK 226 (282)
Q Consensus 211 ~~~~~~A~~~~~~a~~ 226 (282)
....+.+...+.++..
T Consensus 249 ~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 249 LGRYEEALEALEKALE 264 (291)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 2245555555554443
No 208
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=0.68 Score=40.46 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=92.7
Q ss_pred ccchHHHHHHHHHHhhhhhH---HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCC---
Q 023425 30 HSRNKKAMELIAKGWSALKE---VDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPG--- 103 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~--- 103 (282)
..++..||+.+..-.+..+. .-...++|+.. ..++..|..+|++.....|....--+..+..+++.....
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~----~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYR----LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 45688888877654443331 11223333322 356899999999998776555433333333333221110
Q ss_pred ------cC---H-------HHHH-----------HHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-
Q 023425 104 ------AC---K-------AMGA-----------ALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ- 155 (282)
Q Consensus 104 ------~~---~-------~~A~-----------~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~- 155 (282)
.| . +.|+ .+.++-...|+++...+.|-+.+. ..+++.|++-|+.|.+.
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk----egqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK----EGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeec----cccHHHHHHHHHHHHhhc
Confidence 00 0 1111 111111123566777778877776 34459999999999987
Q ss_pred C-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 156 L-HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 156 g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
| .|--.++++.+++. .+++..|+++....++.|
T Consensus 175 GyqpllAYniALaHy~----~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYS----SRQYASALKHISEIIERG 208 (459)
T ss_pred CCCchhHHHHHHHHHh----hhhHHHHHHHHHHHHHhh
Confidence 4 57777999999999 899999999998888764
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.18 E-value=0.61 Score=42.23 Aligned_cols=132 Identities=8% Similarity=-0.070 Sum_probs=81.7
Q ss_pred hhhHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHhcC-----CCCCcCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCC
Q 023425 65 IPLLKTAKENFEL-ALEADNSNTHARYWLSKLHLKY-----HVPGACKAMGAALLVDAANMG-DPDAQYELGCRLRVEND 137 (282)
Q Consensus 65 ~~~~~~A~~~~~~-a~~~~~g~~~a~~~Lg~~~~~~-----~~~~~~~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~g~~ 137 (282)
++|.++|+.++.. .....+.+|+.+-.+|.+|-.. .......++|+.||+++.+.. +.-+-.|++.++.--+.
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGH 274 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCC
Confidence 7899999999999 4446677899999999997633 122345799999999998653 44556677766654332
Q ss_pred CcCCHHHHHHHH----HHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHH
Q 023425 138 YVQSDQQAFYYI----EKAVDQL---HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAI 198 (282)
Q Consensus 138 ~~~d~~~A~~~~----~kAa~~g---~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~ 198 (282)
...+-.+..+.- ....+.| ...-++..|..+.-. ...+|+++|.++++++.... +.+++
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~-vL~~d~~ka~~a~e~~~~l~-~~~W~ 340 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEAS-VLAGDYEKAIQAAEKAFKLK-PPAWE 340 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH-HHcCCHHHHHHHHHHHhhcC-Ccchh
Confidence 222222322222 1122222 233344444333222 22688999999999998774 44443
No 210
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.14 E-value=0.051 Score=30.50 Aligned_cols=29 Identities=14% Similarity=-0.088 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 194 AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 194 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+.+++.+|.+|+. .+++++|+.+|++++.
T Consensus 1 a~~~~~lg~~~~~----~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ----LGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Confidence 4678889999988 7777766666666654
No 211
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=1.7 Score=41.27 Aligned_cols=204 Identities=9% Similarity=-0.062 Sum_probs=112.0
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
-.+++++|..-..+-+... +.+....+|......-...|++|.+.-++-.....++ .-.|.=+.|.+..+ ..++
T Consensus 24 ~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrln----k~De 97 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLN----KLDE 97 (652)
T ss_pred cchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcc----cHHH
Confidence 3556777776666655433 3344455555455555566777764433322111111 11134455555543 3477
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 109 GAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPG--ALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 109 A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~--A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
|+..++ .++..+.....--|.+++..+ ++++|+..|+.-++.+..+ ........-.- ......+.+
T Consensus 98 alk~~~-~~~~~~~~ll~L~AQvlYrl~----~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~~~~~q 165 (652)
T KOG2376|consen 98 ALKTLK-GLDRLDDKLLELRAQVLYRLE----RYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQVQLLQ 165 (652)
T ss_pred HHHHHh-cccccchHHHHHHHHHHHHHh----hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------HhhhHHHHH
Confidence 777777 555555556666666666633 3488888888877764332 22222211100 001111222
Q ss_pred HH--HHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHch---------------------hchh--ccCCCHH
Q 023425 187 RA--SEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARA---------------------NLES--NLMNPVE 241 (282)
Q Consensus 187 ~A--~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~---------------------~lg~--~~~~~~~ 241 (282)
.. ...++-+.+||.+..+.. .+++.+|++.+++|...+.- .|.+ -..|+.+
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~----~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIE----NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 21 113567789999999998 88999999999999442111 1222 2677788
Q ss_pred HHHHHHHHHHHhc
Q 023425 242 KAKEQFEVAAQAG 254 (282)
Q Consensus 242 ~A~~~~~~Aa~~g 254 (282)
+|...|..-+...
T Consensus 242 ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 242 EASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHhc
Confidence 8888777766655
No 212
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.12 E-value=0.052 Score=30.64 Aligned_cols=29 Identities=14% Similarity=-0.020 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 194 AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 194 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+.+++++|.+|.. .+++++|+.+|++|++
T Consensus 1 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 1 AEAYYNLGNAYFQ----LGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----hCCchHHHHHHHHHHH
Confidence 4678888998888 7777766666666654
No 213
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.05 E-value=2.5 Score=40.71 Aligned_cols=202 Identities=12% Similarity=-0.012 Sum_probs=121.3
Q ss_pred hhhhhhcchhhhhhcccchHHHHHHHHHHhhhhhH-H--HHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHH-H--
Q 023425 15 ALGLLQSNQHQKRWLHSRNKKAMELIAKGWSALKE-V--DRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTH-A-- 88 (282)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~-a-- 88 (282)
+.|.++..-..--+..++.+.|...+.++...-.. + -..+....+.......+++.|++..++|.-. |..+. .
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~y 463 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYY 463 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhh
Confidence 34444444455555678889999999988653221 1 1222233334444557899999999999843 44444 1
Q ss_pred ----------------HHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHH
Q 023425 89 ----------------RYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIE 150 (282)
Q Consensus 89 ----------------~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~ 150 (282)
|-.+..+...-+ -.+.....|.+.+++ -.|.--.|.|+.+.+-..+ +++++.|+
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~g----tfestk~vYdriidLriaTPqii~NyAmfLEeh~yf----eesFk~YE 535 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLG----TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF----EESFKAYE 535 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH----HHHHHHHH
Confidence 111122211111 124445557777655 4788888999988874444 99999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcC----CCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 151 KAVDQLHPGALYLLGTVYLTG----DCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 151 kAa~~g~~~A~~~Lg~~y~~g----~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+.+..=..+-.+.|-..|+.. .| ...++.|..+|++|++.=.|..+-.+=..|..-..--+=...|+..|++|..
T Consensus 536 rgI~LFk~p~v~diW~tYLtkfi~ryg-g~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 536 RGISLFKWPNVYDIWNTYLTKFIKRYG-GTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCccCCCccHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999885455556666665532 11 4668999999999999645544333333333210001334567888888865
No 214
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=2.7 Score=40.01 Aligned_cols=171 Identities=12% Similarity=0.077 Sum_probs=99.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHH--HHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVD--RVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~ 107 (282)
.+.|++|+.++.+--....... ....||. ...+..++|++.++ . .++.++.....-+.+++.. .+++
T Consensus 59 ~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~----Yrlnk~Dealk~~~-~--~~~~~~~ll~L~AQvlYrl----~~yd 127 (652)
T KOG2376|consen 59 LDKYEDALKLIKKNGALLVINSFFFEKAYCE----YRLNKLDEALKTLK-G--LDRLDDKLLELRAQVLYRL----ERYD 127 (652)
T ss_pred hhHHHHHHHHHHhcchhhhcchhhHHHHHHH----HHcccHHHHHHHHh-c--ccccchHHHHHHHHHHHHH----hhHH
Confidence 6779999977665332111111 1222332 12345899999998 3 4666666666666665544 4779
Q ss_pred HHHHHHHHHHhCCCHH--HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 023425 108 MGAALLVDAANMGDPD--AQYELGCRLRVENDYVQSDQQAFYYIEKAVD--QLHPGALYLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 108 ~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~--~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
+|+..|+.-++.+..+ .......+-.. . ....+|.+...+ .+.-+-+||.+.++.. .+++.+|++
T Consensus 128 ealdiY~~L~kn~~dd~d~~~r~nl~a~~-a------~l~~~~~q~v~~v~e~syel~yN~Ac~~i~----~gky~qA~e 196 (652)
T KOG2376|consen 128 EALDIYQHLAKNNSDDQDEERRANLLAVA-A------ALQVQLLQSVPEVPEDSYELLYNTACILIE----NGKYNQAIE 196 (652)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHH-H------hhhHHHHHhccCCCcchHHHHHHHHHHHHh----cccHHHHHH
Confidence 9999999998765433 32222221110 0 111112332222 2566778888888888 788899998
Q ss_pred HHHHHHH-------cCC----------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 184 CFHRASE-------KGH----------AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 184 ~~~~A~~-------~g~----------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+++|.. .++ ......|+.++.. .+.-.+|...|...+.
T Consensus 197 lL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~----~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 197 LLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL----QGQTAEASSIYVDIIK 252 (652)
T ss_pred HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH----hcchHHHHHHHHHHHH
Confidence 8888822 111 1234556666665 6677777777776655
No 215
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.18 Score=42.50 Aligned_cols=90 Identities=17% Similarity=0.051 Sum_probs=59.4
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 023425 57 CELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRV 134 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~ 134 (282)
..|+.+.+++.+..|+..|.+|+-.+|..+.-+-+-+.+|... ++++....--++|.+. +...++|.||..+..
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~----~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL----KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh----hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 3445555666677777777777777777666666666666653 4556666666666643 456777777777777
Q ss_pred CCCCcCCHHHHHHHHHHHHH
Q 023425 135 ENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~ 154 (282)
..++ +.|+..+.+|-.
T Consensus 91 s~~~----~eaI~~Lqra~s 106 (284)
T KOG4642|consen 91 SKGY----DEAIKVLQRAYS 106 (284)
T ss_pred hccc----cHHHHHHHHHHH
Confidence 4444 777777777744
No 216
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.088 Score=44.27 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=68.3
Q ss_pred chhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC
Q 023425 22 NQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV 101 (282)
Q Consensus 22 ~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~ 101 (282)
.++..+.+..+++.|+.-|.+++...+ .....+-+...-+...++++....--++|++++|+...++|.||.......
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP-~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~- 92 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINP-TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK- 92 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCC-CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc-
Confidence 345667778999999999999987433 222222111111222567899999999999999999999999999998774
Q ss_pred CCcCHHHHHHHHHHHHh
Q 023425 102 PGACKAMGAALLVDAAN 118 (282)
Q Consensus 102 ~~~~~~~A~~~~~~Aa~ 118 (282)
.+++|+..+.+|-+
T Consensus 93 ---~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 93 ---GYDEAIKVLQRAYS 106 (284)
T ss_pred ---cccHHHHHHHHHHH
Confidence 45999999999954
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.28 E-value=1.9 Score=33.50 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---C--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC---
Q 023425 121 DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ---L--HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--- 192 (282)
Q Consensus 121 ~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~---g--~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--- 192 (282)
.+..++.-|.-.+. ..++.+|++.|+..-.. | -..|+..|+..|+. .+++++|+.-+++=+...
T Consensus 9 ~~~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 9 SPQELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred CHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC
Confidence 44556666665665 44557777777776654 2 36777888888887 788888888887776652
Q ss_pred --CHHHHHHHHHHHHc
Q 023425 193 --HAGAAIAYGSLLLR 206 (282)
Q Consensus 193 --~~~a~~~Lg~~y~~ 206 (282)
-+.|+|..|.+++.
T Consensus 81 p~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYE 96 (142)
T ss_pred CCccHHHHHHHHHHHH
Confidence 35677777777765
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.25 E-value=4.2 Score=37.01 Aligned_cols=155 Identities=10% Similarity=-0.120 Sum_probs=93.3
Q ss_pred hhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHhcCCCCCcC
Q 023425 27 RWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYW-LSKLHLKYHVPGAC 105 (282)
Q Consensus 27 ~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~-Lg~~~~~~~~~~~~ 105 (282)
-.+.|+++.|..-|.-.+. ..+.-.....+....-...++.+.|..|-+.|.+.-|.-+.|.-. |...+.. .|
T Consensus 130 al~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~-----gd 203 (531)
T COG3898 130 ALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA-----GD 203 (531)
T ss_pred HHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc-----CC
Confidence 3458888988888876554 333222222222222334577899999999998888888777665 4444544 48
Q ss_pred HHHHHHHHHHHHhC---CCHHHHHHHHHHHhc--CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCH
Q 023425 106 KAMGAALLVDAANM---GDPDAQYELGCRLRV--ENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDI 178 (282)
Q Consensus 106 ~~~A~~~~~~Aa~~---g~~~A~~~Lg~~y~~--g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~ 178 (282)
++.|+++....-.. +-..+--.-+.++-- +..+.-|...|...-..+.++ +.+.+-..-+..++. .++.
T Consensus 204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~----d~~~ 279 (531)
T COG3898 204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFR----DGNL 279 (531)
T ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh----ccch
Confidence 88888887665321 111111111111110 112244567788777777776 677777777777777 6777
Q ss_pred HHHHHHHHHHHHc
Q 023425 179 ASALWCFHRASEK 191 (282)
Q Consensus 179 ~~A~~~~~~A~~~ 191 (282)
.++-..++.+=+.
T Consensus 280 rKg~~ilE~aWK~ 292 (531)
T COG3898 280 RKGSKILETAWKA 292 (531)
T ss_pred hhhhhHHHHHHhc
Confidence 7777777766443
No 219
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.15 E-value=0.1 Score=30.12 Aligned_cols=26 Identities=15% Similarity=-0.035 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 196 AAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 196 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
|+.+||.+|.. .+++++|+.+|+++.
T Consensus 1 al~~Lg~~~~~----~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQ----QGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHH----CT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 56789999988 788888777777754
No 220
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.12 E-value=0.079 Score=29.41 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+|++++|.+|.. .+++++|+..|++.++.
T Consensus 1 ~a~~~~a~~~~~----~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYK----LGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHH----HCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----ccCHHHHHHHHHHHHHH
Confidence 466777777777 67777777777776553
No 221
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.95 E-value=0.2 Score=43.17 Aligned_cols=60 Identities=15% Similarity=0.041 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhc
Q 023425 71 AKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRV 134 (282)
Q Consensus 71 A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~ 134 (282)
|..||++|+...|+++..++.||.++... ++.-.|+.||-+|. +..++.|..||..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~----~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQ----GDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHT----T-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccc----cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999865 57789999999997 55678999999998877
No 222
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=2.5 Score=37.87 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=48.5
Q ss_pred ccchHHHHHHHHHHhhhhhH----HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcC
Q 023425 30 HSRNKKAMELIAKGWSALKE----VDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGAC 105 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~ 105 (282)
..++..|+.++.-......+ .+....+|... .+|+++|...|+-+.+.+..+++...+|+.++... +.
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh----LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL----g~ 106 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH----LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL----GQ 106 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh----hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH----HH
Confidence 34577787776655443322 22333444322 56799999999999876666777788888776644 23
Q ss_pred HHHHHHHHHHH
Q 023425 106 KAMGAALLVDA 116 (282)
Q Consensus 106 ~~~A~~~~~~A 116 (282)
+.+|...-.+|
T Consensus 107 Y~eA~~~~~ka 117 (557)
T KOG3785|consen 107 YIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHhhC
Confidence 45555444444
No 223
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.82 E-value=3.8 Score=34.99 Aligned_cols=150 Identities=18% Similarity=0.109 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHhcCCCCCcCHHHH
Q 023425 33 NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNT---HARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 33 ~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~---~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
..-+.+||.+|+..+.. +|+++|++.|+......|..| .++..|+..+... .+++.|
T Consensus 31 ~~p~~~LY~~g~~~L~~----------------gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~----~~y~~A 90 (254)
T COG4105 31 NLPASELYNEGLTELQK----------------GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKN----GEYDLA 90 (254)
T ss_pred CCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhc----ccHHHH
Confidence 44677888888775544 349999999999987666654 5788888888866 678999
Q ss_pred HHHHHHHHh--CCC---HHHHHHHHHHHhcCCC-CcCCH---HHHHHHHHHHHHc--C---------------CHHHH--
Q 023425 110 AALLVDAAN--MGD---PDAQYELGCRLRVEND-YVQSD---QQAFYYIEKAVDQ--L---------------HPGAL-- 161 (282)
Q Consensus 110 ~~~~~~Aa~--~g~---~~A~~~Lg~~y~~g~~-~~~d~---~~A~~~~~kAa~~--g---------------~~~A~-- 161 (282)
+....+=+. +++ .-++|..|..++.+.. +..|. ..|+.-|+..+.. + +.-|.
T Consensus 91 ~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 91 LAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 999998875 344 4577778888777653 45554 3455555555543 1 11222
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHc
Q 023425 162 YLLGTVYLTGDCVKKDIASALWCFHRASEK-----GHAGAAIAYGSLLLR 206 (282)
Q Consensus 162 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----g~~~a~~~Lg~~y~~ 206 (282)
..+|..|+. .+.+--|+..++..+++ -..+|+..|...|+.
T Consensus 171 m~IaryY~k----r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~ 216 (254)
T COG4105 171 MAIARYYLK----RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA 216 (254)
T ss_pred HHHHHHHHH----hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 234666766 67777777777777765 125567777777765
No 224
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.63 E-value=4.4 Score=35.16 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.9
Q ss_pred cCCCHHHHHHHHHHHH
Q 023425 236 LMNPVEKAKEQFEVAA 251 (282)
Q Consensus 236 ~~~~~~~A~~~~~~Aa 251 (282)
..++|+.|..||+-|.
T Consensus 258 ~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 258 KAKNYDEAIEWYELAL 273 (278)
T ss_pred hhcCHHHHHHHHHHHH
Confidence 6789999999999775
No 225
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.46 E-value=0.17 Score=29.59 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
.++.+||.+|.. .+++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~----~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRA----QGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHH----CT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----hhhcchhhHHHHHHHH
Confidence 466777777777 7777777777777754
No 226
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=4.1 Score=35.06 Aligned_cols=128 Identities=16% Similarity=0.041 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~ 144 (282)
.+++++|++...+.. .-++.-.=-.++... ...+-|.+..++..+-.+-.....|+..+..--......+.
T Consensus 121 ~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~----~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 121 DGDFDEALKALHLGE-----NLEAAALNVQILLKM----HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred CCChHHHHHHHhccc-----hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhh
Confidence 356999988888742 333333223333333 23377777777777766656666688776542211122699
Q ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 023425 145 AFYYIEKAVDQL--HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLL 205 (282)
Q Consensus 145 A~~~~~kAa~~g--~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~ 205 (282)
|+.+|+.-++.- .+.-+..++.|... .+++++|...++.|++. ++|+...|+-.+=.
T Consensus 192 AfyifeE~s~k~~~T~~llnG~Av~~l~----~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~ 252 (299)
T KOG3081|consen 192 AFYIFEELSEKTPPTPLLLNGQAVCHLQ----LGRYEEAESLLEEALDKDAKDPETLANLIVLAL 252 (299)
T ss_pred HHHHHHHHhcccCCChHHHccHHHHHHH----hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 999999999853 44455566777777 89999999999999886 57888877765443
No 227
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.31 E-value=12 Score=39.37 Aligned_cols=178 Identities=12% Similarity=-0.023 Sum_probs=124.8
Q ss_pred ccchHHHHHHHHHHhhhhhH-------HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCC
Q 023425 30 HSRNKKAMELIAKGWSALKE-------VDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVP 102 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~ 102 (282)
.++.++|.+....++..++- .-.+.++++-+.+| .-+.-.+.|++|++.. +--..+..|..+|...
T Consensus 1471 lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG---~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~--- 1543 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG---TEESLKKVFERACQYC-DAYTVHLKLLGIYEKS--- 1543 (1710)
T ss_pred hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC---cHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHh---
Confidence 56678888888888777741 11233444444444 3455667799998653 3345677788889876
Q ss_pred CcCHHHHHHHHHHHHhC-C-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCcc
Q 023425 103 GACKAMGAALLVDAANM-G-DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LHPGALYLLGTVYLTGDCVKK 176 (282)
Q Consensus 103 ~~~~~~A~~~~~~Aa~~-g-~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~~~A~~~Lg~~y~~g~g~~~ 176 (282)
...++|.++|+.-++. + ....|..+|..++....- +.|...+.+|... .|.+-.-.-+.+-+. .+
T Consensus 1544 -ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~----~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk----~G 1614 (1710)
T KOG1070|consen 1544 -EKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEA----EAARELLKRALKSLPKQEHVEFISKFAQLEFK----YG 1614 (1710)
T ss_pred -hcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH----HHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh----cC
Confidence 4458999999999864 4 678888899988874443 8888889998875 577777777777776 78
Q ss_pred CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Q 023425 177 DIASALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK 227 (282)
Q Consensus 177 d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 227 (282)
|.+++...|+--+..- -.+-|.-+..+-.. ..+.......|++++..
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik----~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIK----HGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHc----cCCHHHHHHHHHHHHhc
Confidence 8999988888765543 44455555555444 56777788888888773
No 228
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.26 E-value=4.1 Score=33.59 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHcCCCCccc
Q 023425 143 QQAFYYIEKAVDQ---LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK---G---HAGAAIAYGSLLLRGVQVPEC 213 (282)
Q Consensus 143 ~~A~~~~~kAa~~---g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---g---~~~a~~~Lg~~y~~g~g~~~~ 213 (282)
+.|+.-|.++-.. ..++-++.||..|.. .|.++++..+.++++. + +++....|+.+|.. .++
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k-----rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~----~~~ 193 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTK-----RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK----LKN 193 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----hcc
Confidence 7788888877655 578888999988875 8899999999998774 2 57888889999988 788
Q ss_pred HHHHHHHH
Q 023425 214 LTKLNAKR 221 (282)
Q Consensus 214 ~~~A~~~~ 221 (282)
++.|..|-
T Consensus 194 ~e~AYiwa 201 (203)
T PF11207_consen 194 YEQAYIWA 201 (203)
T ss_pred hhhhhhhe
Confidence 88887663
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=4.1 Score=35.14 Aligned_cols=141 Identities=6% Similarity=-0.031 Sum_probs=97.8
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH----hCC----CHH
Q 023425 53 VIDYCELNDRRLIPLLKTAKENFELALEAD-NSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA----NMG----DPD 123 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa----~~g----~~~ 123 (282)
.+.|++.+-+.-.+.+.-....+.+.++.+ +.+|.-.-.||.+-.+- .|.+.|..+|++.- ..+ ..-
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~----GD~k~a~~yf~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQI----GDIKTAEKYFQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHhhhhccchhHH
Confidence 444555444455566888888888888876 66788888899988765 46688888887432 221 222
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC-----HHH
Q 023425 124 AQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH-----AGA 196 (282)
Q Consensus 124 A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~-----~~a 196 (282)
-.-+.+.+|.- .+|+..|...|.+..+. .++.+-.+-+.|... .++...|++-.+.+.++.. ...
T Consensus 254 V~~n~a~i~lg----~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY----lg~l~DAiK~~e~~~~~~P~~~l~es~ 325 (366)
T KOG2796|consen 254 VLMNSAFLHLG----QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY----LGKLKDALKQLEAMVQQDPRHYLHESV 325 (366)
T ss_pred HHhhhhhheec----ccchHHHHHHHhhccccCCCchhhhchHHHHHHH----HHHHHHHHHHHHHHhccCCccchhhhH
Confidence 33344555554 56668999999888877 467777788888777 8899999999999988643 334
Q ss_pred HHHHHHHHH
Q 023425 197 AIAYGSLLL 205 (282)
Q Consensus 197 ~~~Lg~~y~ 205 (282)
.+||-.+|+
T Consensus 326 ~~nL~tmyE 334 (366)
T KOG2796|consen 326 LFNLTTMYE 334 (366)
T ss_pred HHHHHHHHH
Confidence 556766665
No 230
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.17 E-value=0.22 Score=27.87 Aligned_cols=28 Identities=11% Similarity=-0.086 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 195 GAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 195 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+++.+|.+|.. .+++++|..+|+++.+
T Consensus 2 ~~~~~lg~~y~~----~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQ----LGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHH----TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 567888888888 7777777777766654
No 231
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.00 E-value=0.91 Score=37.94 Aligned_cols=57 Identities=19% Similarity=0.047 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCccCH-------HHHHHHHHHHHHcC--------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 023425 160 ALYLLGTVYLTGDCVKKDI-------ASALWCFHRASEKG--------HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSA 224 (282)
Q Consensus 160 A~~~Lg~~y~~g~g~~~d~-------~~A~~~~~~A~~~g--------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 224 (282)
.+..|+.+|.. .+|. .+|+.+|.+|.+.. ....+|.+|.++.. .+++++|..||.+.
T Consensus 120 l~LrlAWlyR~----~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr----lg~~~eA~~~fs~v 191 (214)
T PF09986_consen 120 LCLRLAWLYRD----LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR----LGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHhhc----cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH----hCCHHHHHHHHHHH
Confidence 34456666665 4443 34555555554432 13456777777776 55555544444444
No 232
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=92.88 E-value=1.1 Score=39.10 Aligned_cols=114 Identities=15% Similarity=0.060 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc-CCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLK-YHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~-~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
.++.|...|++|.+..+-....+...+.+-+. + .|.+.|.+.|+.+++. .+++-+......+.. ..|.+
T Consensus 16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~----~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~----~~d~~ 87 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCN----KDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK----LNDIN 87 (280)
T ss_dssp HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTC----S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----TT-HH
T ss_pred ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hCcHH
Confidence 38999999999986555567788888888443 3 5667799999999864 566777777777766 34569
Q ss_pred HHHHHHHHHHHc-CCHH---HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 144 QAFYYIEKAVDQ-LHPG---ALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 144 ~A~~~~~kAa~~-g~~~---A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.|...|++++.. .... ..+..-.-|+. .-||.+...+..+++.+.
T Consensus 88 ~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~---~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 88 NARALFERAISSLPKEKQSKKIWKKFIEFES---KYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH---HHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH
Confidence 999999999876 2222 12222222222 145677777777776553
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.83 E-value=3.7 Score=31.91 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC---C--CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM---G--DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--- 155 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~---g--~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--- 155 (282)
..+..+|.-|.-.... +++.+|++.|+.--.. | ...|...|+..|+. ..++++|+.-+++-+++
T Consensus 8 ~~~~~ly~~a~~~l~~----~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 8 KSPQELYQEAQEALQK----GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred CCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCC
Confidence 3455666666665544 5678888887776532 1 45788888888888 45558888888888887
Q ss_pred --CCHHHHHHHHHHHhc
Q 023425 156 --LHPGALYLLGTVYLT 170 (282)
Q Consensus 156 --g~~~A~~~Lg~~y~~ 170 (282)
.-+.|++..|.++..
T Consensus 80 hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYE 96 (142)
T ss_pred CCCccHHHHHHHHHHHH
Confidence 346777888877665
No 234
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.32 E-value=1.5 Score=36.23 Aligned_cols=85 Identities=12% Similarity=-0.050 Sum_probs=47.9
Q ss_pred CchhhHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC
Q 023425 63 RLIPLLKTAKENFELALEADNSNTH-----ARYWLSKLHLKYHVPGACKAMGAALLVDAANMG--DPDAQYELGCRLRVE 135 (282)
Q Consensus 63 ~~~~~~~~A~~~~~~a~~~~~g~~~-----a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~g 135 (282)
...+++++|..-|..|+++-|..+. .+.+-|.++... ..++.|+.-..+|++.+ +..|...-+..|...
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl----~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL----RKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh----hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 3344566777777777665554433 222333344433 34466666666776654 455666666666663
Q ss_pred CCCcCCHHHHHHHHHHHHHc
Q 023425 136 NDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 136 ~~~~~d~~~A~~~~~kAa~~ 155 (282)
.-++.|+.=|++..+.
T Consensus 182 ----ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 ----EKYEEALEDYKKILES 197 (271)
T ss_pred ----hhHHHHHHHHHHHHHh
Confidence 3336777777776665
No 235
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.19 E-value=1.1 Score=40.13 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=55.3
Q ss_pred CCchhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCC--HHHHHHHHHHHhcCCCC
Q 023425 62 RRLIPLLKTAKENFELALEADNSNT-HARYWLSKLHLKYHVPGACKAMGAALLVDAANMGD--PDAQYELGCRLRVENDY 138 (282)
Q Consensus 62 ~~~~~~~~~A~~~~~~a~~~~~g~~-~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~g~~~ 138 (282)
.....|++-|+..++-....+..-. ....++|.++... +|+++|..-|+-+-+..+ .+-..+|+.+++.-+.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhL----gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~- 106 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL----GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ- 106 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh----ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH-
Confidence 3446788888888877754433222 4566778888876 677888888887776554 4456677777666333
Q ss_pred cCCHHHHHHHHHHHHH
Q 023425 139 VQSDQQAFYYIEKAVD 154 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~ 154 (282)
+.+|...-.+|.+
T Consensus 107 ---Y~eA~~~~~ka~k 119 (557)
T KOG3785|consen 107 ---YIEAKSIAEKAPK 119 (557)
T ss_pred ---HHHHHHHHhhCCC
Confidence 3677666666554
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=5.4 Score=34.04 Aligned_cols=154 Identities=13% Similarity=-0.002 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh---CC-----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN---MG-----DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~---~g-----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
|-+..+..-+..|.+. +++++|...+++|++ .+ -+.++-..+++..+ .+-+.++..+|+||+..
T Consensus 29 gaas~yekAAvafRnA----k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake----~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNA----KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKE----LSKLSEVVDLYEKASEL 100 (308)
T ss_pred hhHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHH
Confidence 3455566667777765 677999999999984 22 12345555566555 44459999999999875
Q ss_pred ----CCHHH----HHHHHHHHhcCCCCccCHHHHHHHHHHHHH---cCC--HHH---HHHHHHHHHcCCCCcccHHHHHH
Q 023425 156 ----LHPGA----LYLLGTVYLTGDCVKKDIASALWCFHRASE---KGH--AGA---AIAYGSLLLRGVQVPECLTKLNA 219 (282)
Q Consensus 156 ----g~~~A----~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~g~--~~a---~~~Lg~~y~~g~g~~~~~~~A~~ 219 (282)
|.|+. .-.-|.+..+ .++++|+.+|++++. .++ ..+ +-..+.++.. -+.+++|-.
T Consensus 101 Y~E~GspdtAAmaleKAak~len-----v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr----l~kf~Eaa~ 171 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALEN-----VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR----LEKFTEAAT 171 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh----hHHhhHHHH
Confidence 65543 3445566654 899999999999865 232 222 2333444544 344555555
Q ss_pred HHHHHHHH-----Hchhch---------hccCCCHHHHHHHHHHHHHhc
Q 023425 220 KRVSAAKK-----ARANLE---------SNLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 220 ~~~~a~~~-----a~~~lg---------~~~~~~~~~A~~~~~~Aa~~g 254 (282)
.+.+-... ++..-+ .....|+..|.+.|+.....+
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 55554442 111122 124458999999999998876
No 237
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=92.09 E-value=2.4 Score=34.68 Aligned_cols=115 Identities=16% Similarity=0.087 Sum_probs=82.7
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----CCHHHHHHHHHH
Q 023425 57 CELNDRRLIPLLKTAKENFELALE-ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM----GDPDAQYELGCR 131 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~-~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~~~A~~~Lg~~ 131 (282)
..++..-..+++.+|..+|++++. .--+++..+..|+...... ++...|...+++--+. ..|+.+.-+|..
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~----~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI----QEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh----ccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 444455556779999999999985 1225666666666666644 5678899999888764 368889999999
Q ss_pred HhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 023425 132 LRVENDYVQSDQQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 132 y~~g~~~~~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
|..++.. .+|..-|+.++.- ..+.+-..-+.++.. .++..+|..
T Consensus 170 laa~g~~----a~Aesafe~a~~~ypg~~ar~~Y~e~La~----qgr~~ea~a 214 (251)
T COG4700 170 LAAQGKY----ADAESAFEVAISYYPGPQARIYYAEMLAK----QGRLREANA 214 (251)
T ss_pred HHhcCCc----hhHHHHHHHHHHhCCCHHHHHHHHHHHHH----hcchhHHHH
Confidence 9987776 7788888888876 667777777777776 454444433
No 238
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.64 E-value=1.5 Score=36.04 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHh---CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---C---CHHHHHHHHHHHhcCCCCc
Q 023425 105 CKAMGAALLVDAAN---MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ---L---HPGALYLLGTVYLTGDCVK 175 (282)
Q Consensus 105 ~~~~A~~~~~~Aa~---~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~---g---~~~A~~~Lg~~y~~g~g~~ 175 (282)
..+.|.+-|.++-. ..+++-++.||..|. ..|.++++.++.++.+. + +|+-...|+.+|.. .
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-----krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~----~ 191 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-----KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK----L 191 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----h
Confidence 44888888888763 468999999999887 67789999999999886 3 58888899999998 8
Q ss_pred cCHHHHHHH
Q 023425 176 KDIASALWC 184 (282)
Q Consensus 176 ~d~~~A~~~ 184 (282)
+++++|.-|
T Consensus 192 ~~~e~AYiw 200 (203)
T PF11207_consen 192 KNYEQAYIW 200 (203)
T ss_pred cchhhhhhh
Confidence 889888766
No 239
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=91.57 E-value=0.43 Score=41.76 Aligned_cols=61 Identities=18% Similarity=0.085 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGC 130 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~ 130 (282)
++.++|...|+-|+.++|.+|++...+|.+.+.. .+.-+|-++|.+|. .+|+.+|..+-..
T Consensus 130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~----~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFREMH----NEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh----hhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 4589999999999999999999999999998855 45688889999985 7899999877654
No 240
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.53 E-value=0.25 Score=26.11 Aligned_cols=29 Identities=41% Similarity=0.527 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.+++.+|.+|.. .+++++|+.+|++++..
T Consensus 2 ~~~~~~a~~~~~----~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLK----LGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHH----HhhHHHHHHHHHHHHcc
Confidence 456677777777 77777777777777653
No 241
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.88 E-value=2.5 Score=35.31 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHcC--------CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 142 DQQAFYYIEKAVDQL--------HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 142 ~~~A~~~~~kAa~~g--------~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
..+|+++|.+|.+.. ....++.+|.++.. .+++++|..||.+.+..+.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr----lg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR----LGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcCCC
Confidence 367888888887652 24677889999888 8999999999999987653
No 242
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.51 E-value=4.4 Score=33.24 Aligned_cols=88 Identities=13% Similarity=0.088 Sum_probs=48.2
Q ss_pred ccCHHHHHHHHHHHHHcC-C----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhc-----h--hccCCCHHH
Q 023425 175 KKDIASALWCFHRASEKG-H----AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANL-----E--SNLMNPVEK 242 (282)
Q Consensus 175 ~~d~~~A~~~~~~A~~~g-~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~l-----g--~~~~~~~~~ 242 (282)
.+++++|..-++.+..+. + +-+..+|+.+... .+.++.|..-+.--.+.+|..+ | .+..+|.++
T Consensus 102 ~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q----~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 102 ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ----QKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH----hhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 455555555555554321 1 3344555555555 4555555554444444333321 2 336677889
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Q 023425 243 AKEQFEVAAQAGCNLGLRWLQRIE 266 (282)
Q Consensus 243 A~~~~~~Aa~~g~~~a~~~l~~l~ 266 (282)
|+.-|++|.+.+...+...+-.++
T Consensus 178 Ar~ay~kAl~~~~s~~~~~~lqmK 201 (207)
T COG2976 178 ARAAYEKALESDASPAAREILQMK 201 (207)
T ss_pred HHHHHHHHHHccCChHHHHHHHhH
Confidence 999999999986555544444443
No 243
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.51 E-value=0.53 Score=25.86 Aligned_cols=28 Identities=7% Similarity=-0.157 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 195 GAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 195 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+|++++|.+|.. .+++++|...|++.+.
T Consensus 1 ~a~~~~a~~~~~----~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 1 DALYRLARCYYK----LGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHH----HCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----ccCHHHHHHHHHHHHH
Confidence 478999999998 7788877777766653
No 244
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.24 E-value=1.1 Score=39.69 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=70.9
Q ss_pred hhhhhcccchHHHHHHHHHHhhhh---hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCC
Q 023425 24 HQKRWLHSRNKKAMELIAKGWSAL---KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYH 100 (282)
Q Consensus 24 ~~~~~~~~~~~~A~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~ 100 (282)
+.....+++|+.|.+.|.+|+... .....+.+.+........+|+..|+.=-.+|+..+|.|..|++.=+.++...
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL- 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL- 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH-
Confidence 344556888999999999998743 3556666666666666678899999999999999999999999999888765
Q ss_pred CCCcCHHHHHHHHHHHHh
Q 023425 101 VPGACKAMGAALLVDAAN 118 (282)
Q Consensus 101 ~~~~~~~~A~~~~~~Aa~ 118 (282)
...+.|..|.+...+
T Consensus 167 ---e~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 167 ---ERFAEAVNWCEEGLQ 181 (390)
T ss_pred ---HHHHHHHHHHhhhhh
Confidence 344778888877754
No 245
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.76 E-value=1.5 Score=25.31 Aligned_cols=29 Identities=10% Similarity=-0.130 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 194 AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 194 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
..++.+||.+|.. .+++++|..+++++..
T Consensus 2 a~~~~~la~~~~~----~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRA----QGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHH----CT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----hhhcchhhHHHHHHHH
Confidence 4678899999998 7888888888877765
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.00 E-value=20 Score=31.36 Aligned_cols=125 Identities=14% Similarity=-0.002 Sum_probs=79.6
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH-hCCCHHHHHHHH--HH
Q 023425 55 DYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA-NMGDPDAQYELG--CR 131 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa-~~g~~~A~~~Lg--~~ 131 (282)
.+..+......+++.+|...|..+.+..|.++++-..|+.+|...+ +.+.|...+...- +..+..++---+ .+
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g----~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAG----DVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcC----ChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3344445555678999999999999999999999999999999763 4477776666532 222222222111 11
Q ss_pred HhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 132 LRVENDYVQSDQQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 132 y~~g~~~~~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+..-... .+....-.+.+.. ++.++.+.|+..|.. .++.+.|++.+-.-+..
T Consensus 213 l~qaa~~----~~~~~l~~~~aadPdd~~aa~~lA~~~~~----~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 213 LEQAAAT----PEIQDLQRRLAADPDDVEAALALADQLHL----VGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHhcC----CCHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 2121111 2222333333333 788888889988888 88888888877665554
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=86.09 E-value=13 Score=28.35 Aligned_cols=45 Identities=16% Similarity=0.035 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDA 116 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~A 116 (282)
+++|+.++++++..+|-+..++..|-.+|... ++...|+..|++.
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~----g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQ----GRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT----T-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC----cCHHHHHHHHHHH
Confidence 44555555555555555444444444444433 2334444444443
No 248
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.93 E-value=3.1 Score=32.05 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=53.3
Q ss_pred hhhhhHHhhhhhhhcchhhhhhcccchHHHHHHHHHHhh-hhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC
Q 023425 7 KASTLKSAALGLLQSNQHQKRWLHSRNKKAMELIAKGWS-ALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN 85 (282)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~ 85 (282)
+.++.++-+.+++.|.+.. +..+-+..+..-.+ +-+.......|...-++...++++++.++....++.+|++
T Consensus 31 s~~s~f~lAwaLV~S~~~~------dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTE------DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hHHHHHHHHHHHHcccchH------HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 3456666777777775532 35566666666553 3444455556666667777888999999999999988888
Q ss_pred HHHHH
Q 023425 86 THARY 90 (282)
Q Consensus 86 ~~a~~ 90 (282)
++|.-
T Consensus 105 ~Qa~~ 109 (149)
T KOG3364|consen 105 RQALE 109 (149)
T ss_pred HHHHH
Confidence 87764
No 249
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=85.13 E-value=6.4 Score=30.35 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHH
Q 023425 155 QLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAY 200 (282)
Q Consensus 155 ~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~L 200 (282)
.-+|+-.+.||..|.. .++..++-+.+++|++.|-.+|+.++
T Consensus 117 ~~~p~~L~kia~Ay~k----lg~~r~~~ell~~ACekG~kEAC~nI 158 (161)
T PF09205_consen 117 EINPEFLVKIANAYKK----LGNTREANELLKEACEKGLKEACRNI 158 (161)
T ss_dssp -S-HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----hcchhhHHHHHHHHHHhchHHHHHHh
Confidence 3578888999999999 89999999999999999999999775
No 250
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.01 E-value=1.1 Score=23.68 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
.+.+.||.++.. .+|+++|..+++
T Consensus 2 ~a~~~la~~~~~----~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLA----QGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHh
Confidence 355666666666 666777666654
No 251
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.82 E-value=1.3 Score=22.98 Aligned_cols=27 Identities=15% Similarity=-0.015 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 195 GAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 195 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
.+++++|.+|.. .++++.|..++++++
T Consensus 2 ~~~~~~a~~~~~----~~~~~~a~~~~~~~~ 28 (34)
T smart00028 2 EALYNLGNAYLK----LGDYDEALEYYEKAL 28 (34)
T ss_pred hHHHHHHHHHHH----HhhHHHHHHHHHHHH
Confidence 456778888877 667766666665554
No 252
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=84.74 E-value=30 Score=34.15 Aligned_cols=39 Identities=23% Similarity=0.188 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHH
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-LHPGALYLL 164 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-g~~~A~~~L 164 (282)
-+|..++|..+.+ ...++.|.+||.+.-.. +..++++.|
T Consensus 796 e~A~r~ig~~fa~----~~~We~A~~yY~~~~~~e~~~ecly~l 835 (1189)
T KOG2041|consen 796 EDAFRNIGETFAE----MMEWEEAAKYYSYCGDTENQIECLYRL 835 (1189)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHhccchHhHHHHHHHH
Confidence 4566666666655 55566677777666544 444444443
No 253
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.56 E-value=11 Score=30.45 Aligned_cols=58 Identities=14% Similarity=-0.063 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 123 DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL-----HPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 123 ~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
.++..+|..|..-+ |.+.|+++|.++-+-- ..+.++++-.+... .+|+.....+..+|
T Consensus 37 ~~~~~l~~~~~~~G----d~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 37 MALEDLADHYCKIG----DLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHhh----hHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHH
Confidence 56666666666633 3367777776655431 12333333333333 45666666666665
No 254
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.56 E-value=4.1 Score=28.92 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC
Q 023425 72 KENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM 119 (282)
Q Consensus 72 ~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~ 119 (282)
+.-++++++.+|+++.+.+.|+..+... .+++.|+..+...++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~----g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAA----GDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHT----T-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHh
Confidence 4457788888999999999999998866 5678888888888754
No 255
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=84.06 E-value=2.5 Score=36.30 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=39.8
Q ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 109 GAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 109 A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
|..||.+|+ .+++...++.||.+... ..|.=.|+.||-++.-- ..+.|..+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~----~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY----QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH----TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc----ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 567888886 46777888888888777 44557888888887643 567777777777654
No 256
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=83.86 E-value=1.3 Score=38.88 Aligned_cols=83 Identities=17% Similarity=0.088 Sum_probs=57.8
Q ss_pred hhhHHhhhhhhhcchhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHH
Q 023425 9 STLKSAALGLLQSNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHA 88 (282)
Q Consensus 9 ~~l~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a 88 (282)
++-+..+++.+. ........|..++|+.+|..++. +..........+|.....-+++-+|-.+|-+|+..+|++.+|
T Consensus 110 pa~~kEA~~Al~--~A~~~~~~Gk~ekA~~lfeHAla-laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 110 PAKVKEAILALK--AAGRSRKDGKLEKAMTLFEHALA-LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred chhhHHHHHHHH--HHHHHHhccchHHHHHHHHHHHh-cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 334444555443 33344568889999999999886 443334444555554444578999999999999999999999
Q ss_pred HHHHHH
Q 023425 89 RYWLSK 94 (282)
Q Consensus 89 ~~~Lg~ 94 (282)
..+-..
T Consensus 187 LvnR~R 192 (472)
T KOG3824|consen 187 LVNRAR 192 (472)
T ss_pred Hhhhhc
Confidence 886543
No 257
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=83.23 E-value=2.7 Score=37.16 Aligned_cols=90 Identities=18% Similarity=0.106 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH----cC----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH--
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASE----KG----HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK-- 227 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~----~g----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 227 (282)
.+|+.+.+..|-. -+|.+.|++|+++..+ .| -.....+||.+|..-.-+.+.+++|...+++..+.
T Consensus 104 ~ea~~~kaeYycq----igDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 104 REAMLRKAEYYCQ----IGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh
Confidence 5677778888877 7888888888776644 33 35677888888888777888888888888888652
Q ss_pred -----HchhchhccCCCHHHHHHHHHHHH
Q 023425 228 -----ARANLESNLMNPVEKAKEQFEVAA 251 (282)
Q Consensus 228 -----a~~~lg~~~~~~~~~A~~~~~~Aa 251 (282)
.+.-+=.+.-.|+.+|-..|.-+.
T Consensus 180 rNRlKvY~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 180 RNRLKVYQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 111111334456666665555443
No 258
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.72 E-value=17 Score=30.21 Aligned_cols=94 Identities=13% Similarity=-0.054 Sum_probs=62.2
Q ss_pred cCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCC
Q 023425 104 ACKAMGAALLVDAANMG-------DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL--HPGALYLLGTVYLTGDCV 174 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~~g-------~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~g~g~ 174 (282)
.++++|..-|..|++.- ...-+.|-|..+..... ++.|+.-..||++.+ +..|..+-+..|..
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k----~e~aI~dcsKaiel~pty~kAl~RRAeayek---- 180 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK----WESAIEDCSKAIELNPTYEKALERRAEAYEK---- 180 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh----HHHHHHHHHhhHhcCchhHHHHHHHHHHHHh----
Confidence 46788888888887642 12234455666665333 378888888888874 56777888888888
Q ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023425 175 KKDIASALWCFHRASEKGHAGAAIAYGSLLL 205 (282)
Q Consensus 175 ~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~ 205 (282)
...++.|++=|++..+.....-..+-+.+-.
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 7888888888888877654333333333333
No 259
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.03 E-value=0.88 Score=40.38 Aligned_cols=86 Identities=16% Similarity=-0.031 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG--DPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+++|+.+|-.+++++|+.+.-+..-+.++... +....|++=+..|++.+ ....+-.-|....- ..++.+|
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl----~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl----lg~~e~a 201 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKL----KKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL----LGNWEEA 201 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeec----cCCchhhhhhhhhhccCcccccccchhhHHHHH----hhchHHH
Confidence 89999999999999999888888888888766 34477888888887654 22223333333333 4455888
Q ss_pred HHHHHHHHHcCCHHHH
Q 023425 146 FYYIEKAVDQLHPGAL 161 (282)
Q Consensus 146 ~~~~~kAa~~g~~~A~ 161 (282)
...+..+++.+.-++-
T Consensus 202 a~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 202 AHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHhccccHHH
Confidence 8888888888754444
No 260
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=81.89 E-value=5.5 Score=34.65 Aligned_cols=111 Identities=11% Similarity=-0.057 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHH
Q 023425 106 KAMGAALLVDAANMG--DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASA 181 (282)
Q Consensus 106 ~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A 181 (282)
.+.|-..|++|.+.+ ..+-+...|.+-..- .+|.+.|...|+.+++. .++.-+..-...+.. .+|.+.|
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~---~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~----~~d~~~a 89 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYC---NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK----LNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT---CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----TT-HHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hCcHHHH
Confidence 589999999998654 456677777773331 34447799999999987 556666555566666 7899999
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 182 LWCFHRASEKGHAGA----AIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 182 ~~~~~~A~~~g~~~a----~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
...|++++..-...- .+.-=.=|+.. -++.+.....+++..+
T Consensus 90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~---~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 90 RALFERAISSLPKEKQSKKIWKKFIEFESK---YGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHCCTSSCHHHCHHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH
Confidence 999999987632221 22222222222 3466666667766665
No 261
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=80.90 E-value=2.5 Score=29.27 Aligned_cols=35 Identities=23% Similarity=0.134 Sum_probs=25.3
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALE 80 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 80 (282)
.+.|+.|.+.+.+|++.... ++.++|+.+|+++++
T Consensus 2 k~~~~~A~~~I~kaL~~dE~----------------g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 2 RGYYKQAFEEISKALRADEW----------------GDKEQALAHYRKGLR 36 (79)
T ss_pred chHHHHHHHHHHHHhhhhhc----------------CCHHHHHHHHHHHHH
Confidence 45688999999988763322 347888888888864
No 262
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.07 E-value=6.8 Score=35.11 Aligned_cols=57 Identities=21% Similarity=0.128 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 127 ELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 127 ~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.-|+-|+..+.+ ++|+.+|.+++.. .++--+.+-+..|+. .+.+..|..=...|+..
T Consensus 102 E~GN~yFKQgKy----~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 102 ERGNTYFKQGKY----EEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAEEDCEAAIAL 160 (536)
T ss_pred Hhhhhhhhccch----hHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHHHhHHHHHHh
Confidence 345566665555 8888888888876 467777777777777 66666666555555443
No 263
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.68 E-value=3.7 Score=26.02 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=24.0
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKL 95 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~ 95 (282)
..+++++|..+.+.+++.+|++..|......+
T Consensus 13 kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 13 KLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 34669999999999999999998887654443
No 264
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=78.84 E-value=19 Score=27.47 Aligned_cols=58 Identities=19% Similarity=-0.000 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSA 224 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 224 (282)
.+...++..+.. .+++++|+.++++++... +..++..|-.+|.. .++...|...|++.
T Consensus 63 ~~~~~l~~~~~~----~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~----~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 63 DALERLAEALLE----AGDYEEALRLLQRALALDPYDEEAYRLLMRALAA----QGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHH
Confidence 344445555554 555555555555554432 34455555555554 44555444444443
No 265
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.55 E-value=9.6 Score=36.58 Aligned_cols=79 Identities=24% Similarity=0.190 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHH
Q 023425 105 CKAMGAALLVDAANMG---DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL--HPGALYLLGTVYLTGDCVKKDIA 179 (282)
Q Consensus 105 ~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~g~g~~~d~~ 179 (282)
+..-|+.++..|.... ..-...+|+.+....+-+ ..|-.++.++.... .|--.+.+|.+|+- .+|.+
T Consensus 622 n~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~----~da~~~l~q~l~~~~sepl~~~~~g~~~l~----l~~i~ 693 (886)
T KOG4507|consen 622 NSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLH----LDATKLLLQALAINSSEPLTFLSLGNAYLA----LKNIS 693 (886)
T ss_pred CcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhh----ccHHHHHHHHHhhcccCchHHHhcchhHHH----HhhhH
Confidence 3455555555554321 122344555555443333 45555555555542 34444555555555 55566
Q ss_pred HHHHHHHHHHHc
Q 023425 180 SALWCFHRASEK 191 (282)
Q Consensus 180 ~A~~~~~~A~~~ 191 (282)
.|++.|+.|.+.
T Consensus 694 ~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 694 GALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHHhc
Confidence 666666666554
No 266
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.42 E-value=5 Score=35.93 Aligned_cols=53 Identities=13% Similarity=-0.112 Sum_probs=37.1
Q ss_pred CCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Q 023425 62 RRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN 118 (282)
Q Consensus 62 ~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~ 118 (282)
+...+.+++|+++|.+++.+.|-+|.-+.+-+..|... ..+..|..-...|+.
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~----K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ----KSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHH----HHHHHHHHhHHHHHH
Confidence 33345599999999999999998888888888888754 233444444444443
No 267
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.30 E-value=62 Score=30.57 Aligned_cols=249 Identities=10% Similarity=0.011 Sum_probs=136.1
Q ss_pred hhhhhhhhHHhhhhhhhcchhhhhh-----cccchHHHHHHHHHHhhhhhHHHH--HHHHHhhcCCCchhhHHHHHHHHH
Q 023425 4 QISKASTLKSAALGLLQSNQHQKRW-----LHSRNKKAMELIAKGWSALKEVDR--VIDYCELNDRRLIPLLKTAKENFE 76 (282)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~A~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~ 76 (282)
-|.+|.++++-.+-+....++-.++ .+|+..-|...|..++..+.+... .............+.++.|...|+
T Consensus 189 eieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyk 268 (677)
T KOG1915|consen 189 EIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYK 268 (677)
T ss_pred HHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777666665444443332 277777788888887776653221 122222222333466888888899
Q ss_pred HHHHcCCCC-HHHHHHHHHHHhcCCCCCcCHHHHHHH-----HHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHH
Q 023425 77 LALEADNSN-THARYWLSKLHLKYHVPGACKAMGAAL-----LVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYY 148 (282)
Q Consensus 77 ~a~~~~~g~-~~a~~~Lg~~~~~~~~~~~~~~~A~~~-----~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~ 148 (282)
-|++--|.+ ++-.|.=-..+....|.....+.++.. |++-+. +-+-++++.+=.+-... .|.+.-.+.
T Consensus 269 yAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~----g~~~~Ire~ 344 (677)
T KOG1915|consen 269 YALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV----GDKDRIRET 344 (677)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc----CCHHHHHHH
Confidence 998744433 333332222233333333334555432 444443 44778988887777663 345889999
Q ss_pred HHHHHHcCCH---------HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC----C--HHHHHHHHHHHHcCCCCccc
Q 023425 149 IEKAVDQLHP---------GALYLLGTVYLTGDCVKKDIASALWCFHRASEKG----H--AGAAIAYGSLLLRGVQVPEC 213 (282)
Q Consensus 149 ~~kAa~~g~~---------~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g----~--~~a~~~Lg~~y~~g~g~~~~ 213 (282)
|++|+..--| .-+..+-.+++.- -..+|.+.+...|+.+++.= . +..+...+.+-.. ..|
T Consensus 345 yErAIanvpp~~ekr~W~RYIYLWinYalyeE-le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR----q~~ 419 (677)
T KOG1915|consen 345 YERAIANVPPASEKRYWRRYIYLWINYALYEE-LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR----QLN 419 (677)
T ss_pred HHHHHccCCchhHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH----Hcc
Confidence 9999875222 1112222222221 23688999999999888741 2 2223333333333 556
Q ss_pred HHHHHHHHHHHHHHHc---hhchh----ccCCCHHHHHHHHHHHHHhccHHHHHH
Q 023425 214 LTKLNAKRVSAAKKAR---ANLES----NLMNPVEKAKEQFEVAAQAGCNLGLRW 261 (282)
Q Consensus 214 ~~~A~~~~~~a~~~a~---~~lg~----~~~~~~~~A~~~~~~Aa~~g~~~a~~~ 261 (282)
++.|.+.+-.|+..+- .--|+ ...++++...+.|++-.+-++.....|
T Consensus 420 l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W 474 (677)
T KOG1915|consen 420 LTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAW 474 (677)
T ss_pred cHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHH
Confidence 6666666665554211 01111 134466777777777777665543333
No 268
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=77.93 E-value=44 Score=28.72 Aligned_cols=108 Identities=14% Similarity=0.010 Sum_probs=56.3
Q ss_pred ccchHHHHHHHHHHhhhhhHHHH-HHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcC---
Q 023425 30 HSRNKKAMELIAKGWSALKEVDR-VIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGAC--- 105 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~--- 105 (282)
.+++++|++++.+|...+-+... ..+-.. .---++.|+++ -.+-+.+..-+|..++..-....+.
T Consensus 3 ~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL---------~~lliev~~~~--~~~~~~~~~~rl~~l~~~~~~~~p~r~~ 71 (260)
T PF04190_consen 3 QKKYDEAIDLLYSGALILLKHGQYGSGADL---------ALLLIEVYEKS--EDPVDEESIARLIELISLFPPEEPERKK 71 (260)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTT-HHHHHHH---------HHHHHHHHHHT--T---SHHHHHHHHHHHHHS-TT-TTHHH
T ss_pred cccHHHHHHHHHHHHHHHHHCCCcchHHHH---------HHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCCCcchHHH
Confidence 45689999998888775543211 111111 01112334443 2334445555666665533211111
Q ss_pred -HHHHHHHHHHH-HhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHH
Q 023425 106 -KAMGAALLVDA-ANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKA 152 (282)
Q Consensus 106 -~~~A~~~~~~A-a~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kA 152 (282)
.+.|++|-+.. -..|+|+-+..+|..|.+ .+++.+|..+|-.+
T Consensus 72 fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 72 FIKAAIKWSKFGSYKFGDPELHHLLAEKLWK----EGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHTSS-TT--HHHHHHHHHHHHH----TT-HHHHHHHHHTS
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHh----hccHHHHHHHHHhc
Confidence 36777777111 246899999999999988 44558888877654
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=77.89 E-value=44 Score=28.65 Aligned_cols=129 Identities=16% Similarity=0.103 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C--
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAANM--G---DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L-- 156 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g---~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g-- 156 (282)
+.-+|+=|.-..+. +++++|+..|+..... + ...++..|+..+.. ..++++|+....+-..+ +
T Consensus 34 ~~~LY~~g~~~L~~----gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk----~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 34 ASELYNEGLTELQK----GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK----NGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCC
Confidence 33444444443433 5889999999998743 2 36899999999998 55559999999999887 3
Q ss_pred -CHHHHHHHHHHHhcCC-CCccCHHHHHH---HHHHHHHc-----------------CCHHH--HHHHHHHHHcCCCCcc
Q 023425 157 -HPGALYLLGTVYLTGD-CVKKDIASALW---CFHRASEK-----------------GHAGA--AIAYGSLLLRGVQVPE 212 (282)
Q Consensus 157 -~~~A~~~Lg~~y~~g~-g~~~d~~~A~~---~~~~A~~~-----------------g~~~a--~~~Lg~~y~~g~g~~~ 212 (282)
-..+++..|..++.+. .+.+|..-+.. -|+.-++. .+..| -+.+|.+|.. .+
T Consensus 106 n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~k----r~ 181 (254)
T COG4105 106 NADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLK----RG 181 (254)
T ss_pred ChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH----hc
Confidence 3567788899988885 56666655444 44444442 11112 2334666766 56
Q ss_pred cHHHHHHHHHHHHH
Q 023425 213 CLTKLNAKRVSAAK 226 (282)
Q Consensus 213 ~~~~A~~~~~~a~~ 226 (282)
.+..|+..++..++
T Consensus 182 ~~~AA~nR~~~v~e 195 (254)
T COG4105 182 AYVAAINRFEEVLE 195 (254)
T ss_pred ChHHHHHHHHHHHh
Confidence 66666666666655
No 270
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.76 E-value=5.1 Score=27.45 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 142 DQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 142 ~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
.++|+.+.++|++.+. .+++++|+.+|..|++
T Consensus 3 l~kai~Lv~~A~~eD~-----------------~gny~eA~~lY~~ale 34 (75)
T cd02680 3 LERAHFLVTQAFDEDE-----------------KGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHHHHHHHhhH-----------------hhhHHHHHHHHHHHHH
Confidence 4566666666655432 4667777777777765
No 271
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=77.51 E-value=4.3 Score=37.66 Aligned_cols=97 Identities=13% Similarity=-0.010 Sum_probs=65.1
Q ss_pred hcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHH
Q 023425 28 WLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 28 ~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~ 107 (282)
.....++.|+++|.|++...++. ..+.-.....+-...++..|+.=+.+|++.+|....+++.=|..+..+ ....
T Consensus 15 l~~~~fd~avdlysKaI~ldpnc-a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l----~~~~ 89 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNC-AIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL----GEFK 89 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcc-eeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH----HHHH
Confidence 34556899999999988744432 222222223455667899999999999999999888888877777655 3446
Q ss_pred HHHHHHHHHH--hCCCHHHHHHHH
Q 023425 108 MGAALLVDAA--NMGDPDAQYELG 129 (282)
Q Consensus 108 ~A~~~~~~Aa--~~g~~~A~~~Lg 129 (282)
+|+.-|++.+ .+.++.+--.+-
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHHH
Confidence 7777666654 355666544443
No 272
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=76.88 E-value=21 Score=26.50 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=15.6
Q ss_pred hcccchHHHHHHHHHHhhhh
Q 023425 28 WLHSRNKKAMELIAKGWSAL 47 (282)
Q Consensus 28 ~~~~~~~~A~e~~~~~~~~~ 47 (282)
...|++-+|++++...+..-
T Consensus 7 ~~rGnhiKAL~iied~i~~h 26 (111)
T PF04781_consen 7 FARGNHIKALEIIEDLISRH 26 (111)
T ss_pred HHccCHHHHHHHHHHHHHHc
Confidence 45788999999998877633
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=76.59 E-value=64 Score=30.53 Aligned_cols=146 Identities=13% Similarity=-0.042 Sum_probs=92.4
Q ss_pred cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--------------C-----------
Q 023425 104 ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--------------L----------- 156 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--------------g----------- 156 (282)
++...-++.-++|.+ ++.++|+.-|+.= ......+|..+|++|.+. |
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEE------eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt 255 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEE------EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT 255 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhcccc------cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence 455666666777764 4566777666631 123458889999888762 1
Q ss_pred --CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH---
Q 023425 157 --HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK--- 227 (282)
Q Consensus 157 --~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--- 227 (282)
.+.+-.+|+.|... .|+.++|++.|+.-... +.....++|-.++.. .+.+.++...+.+-.+.
T Consensus 256 ~~~~y~KrRLAmCark----lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe----lq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARK----LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE----LQAYADVQALLAKYDDISLP 327 (539)
T ss_pred chhhhhHHHHHHHHHH----hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh----cCCHHHHHHHHHHhccccCC
Confidence 13455678888887 89999999999998753 234578888888887 55555554444443221
Q ss_pred ----Hchhch------------------hccCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 023425 228 ----ARANLE------------------SNLMNPVEKAKEQFEVAAQAGCNLGLRWLQ 263 (282)
Q Consensus 228 ----a~~~lg------------------~~~~~~~~~A~~~~~~Aa~~g~~~a~~~l~ 263 (282)
-+|.-. .+..-....|++.+.+|.+.......|.|.
T Consensus 328 kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 328 KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 011100 011112456888899999988887777664
No 274
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.35 E-value=10 Score=35.52 Aligned_cols=114 Identities=13% Similarity=-0.044 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHH--
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQ-- 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~-- 143 (282)
+|.-+|+..-.+.+. -+.-..++-.||.+|. .+|+-.+.+..+.+.--.-+++|..-+.+.-..+|.+
T Consensus 523 gd~i~AL~~a~kLLq-~~~lS~~~kfLGHiYA---------aEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~ 592 (696)
T KOG2471|consen 523 GDPIKALSAATKLLQ-LADLSKIYKFLGHIYA---------AEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQW 592 (696)
T ss_pred cChhhHHHHHHHHHh-hhhhhhHHHHHHHHHH---------HHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhh
Confidence 346777777777774 3578889999999998 8888888888876643333444443222111111111
Q ss_pred ------------HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 144 ------------QAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 144 ------------~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
.+.+.+--..+.-..--.++||..|-. .+++++|..++..|+..-+
T Consensus 593 ~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~al----q~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 593 WKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALAL----QGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred hccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHH----hcccHHHHHHHHHHHHhhh
Confidence 122222112222223345788888877 8899999999999877543
No 275
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=75.74 E-value=4.2 Score=30.63 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC--CCccCHHHHHHHHHHHHH
Q 023425 142 DQQAFYYIEKAVDQLHPGALYLLGTVYLTGD--CVKKDIASALWCFHRASE 190 (282)
Q Consensus 142 ~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~--g~~~d~~~A~~~~~~A~~ 190 (282)
.+.|+.||.+=-++...+.-.+++.++..+. .-.++.++|+..|++|.+
T Consensus 78 A~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 78 ADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4678888888777765555555555444332 127788888888888855
No 276
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.20 E-value=51 Score=27.17 Aligned_cols=89 Identities=19% Similarity=0.116 Sum_probs=64.7
Q ss_pred cCHHHHHHHHHHHHh-CCC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHhcCCCCccC
Q 023425 104 ACKAMGAALLVDAAN-MGD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPG-ALYLLGTVYLTGDCVKKD 177 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~-~g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~-A~~~Lg~~y~~g~g~~~d 177 (282)
.+.++|+..++.+.. ..+ +-+-.+|+.+....+.. ++|+..+..-.+.+... ....-|.++.. .+|
T Consensus 103 ~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~----D~AL~~L~t~~~~~w~~~~~elrGDill~----kg~ 174 (207)
T COG2976 103 NNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKA----DAALKTLDTIKEESWAAIVAELRGDILLA----KGD 174 (207)
T ss_pred ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhH----HHHHHHHhccccccHHHHHHHHhhhHHHH----cCc
Confidence 677999999998873 332 34667788888885554 88988877666655443 34557999998 999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH
Q 023425 178 IASALWCFHRASEKGHAGAAIAY 200 (282)
Q Consensus 178 ~~~A~~~~~~A~~~g~~~a~~~L 200 (282)
..+|+.-|.+|.+.+...+.-.+
T Consensus 175 k~~Ar~ay~kAl~~~~s~~~~~~ 197 (207)
T COG2976 175 KQEARAAYEKALESDASPAAREI 197 (207)
T ss_pred hHHHHHHHHHHHHccCChHHHHH
Confidence 99999999999998644443333
No 277
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.07 E-value=9.1 Score=26.22 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH
Q 023425 33 NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALE 80 (282)
Q Consensus 33 ~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 80 (282)
.++|++++.+|+.... .+++++|+.+|..|++
T Consensus 3 l~kai~Lv~~A~~eD~----------------~gny~eA~~lY~~ale 34 (75)
T cd02680 3 LERAHFLVTQAFDEDE----------------KGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHHHHHHHhhH----------------hhhHHHHHHHHHHHHH
Confidence 4567777766654222 2347777777777765
No 278
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=73.01 E-value=15 Score=32.53 Aligned_cols=79 Identities=13% Similarity=-0.131 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcC--CCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCC---C-c---------CCHHHHHHH
Q 023425 86 THARYWLSKLHLKY--HVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVEND---Y-V---------QSDQQAFYY 148 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~--~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~---~-~---------~d~~~A~~~ 148 (282)
+.++..+|...... .....+.+++...|+.|++. ....+++.+|..+..--. . + +=...|+..
T Consensus 252 a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~ 331 (352)
T PF02259_consen 252 AKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEG 331 (352)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHH
Confidence 34555555554432 11224567778888888754 456677777766543111 0 0 012568888
Q ss_pred HHHHHHcCCHHHHHHH
Q 023425 149 IEKAVDQLHPGALYLL 164 (282)
Q Consensus 149 ~~kAa~~g~~~A~~~L 164 (282)
|-+|+..|+..+.-.+
T Consensus 332 y~~al~~~~~~~~~~~ 347 (352)
T PF02259_consen 332 YLKALSLGSKYVRQDL 347 (352)
T ss_pred HHHHHhhCCCchHHHh
Confidence 9998888766544443
No 279
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=72.47 E-value=11 Score=20.06 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKL 95 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~ 95 (282)
+++.+...|++++...|.++..+..+...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 47888889999988888888777665543
No 280
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.10 E-value=21 Score=31.88 Aligned_cols=86 Identities=15% Similarity=-0.029 Sum_probs=61.0
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHc--C----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHH
Q 023425 129 GCRLRVENDYVQSDQQAFYYIEKAVDQ--L----HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAY 200 (282)
Q Consensus 129 g~~y~~g~~~~~d~~~A~~~~~kAa~~--g----~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~L 200 (282)
|+-|+. .+++..|...|.+++.. + ++..+.|-+.+-+. .+|+..|+.=..+|... .+..|+++=
T Consensus 88 GN~~fK----~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 88 GNEYFK----EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----LGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred hHHHHH----hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 444444 55668888888888776 2 24455666666666 67888888887777665 467788888
Q ss_pred HHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 201 GSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 201 g~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+.|+.. .+....|..|++....
T Consensus 160 Akc~~e----Le~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 160 AKCLLE----LERFAEAVNWCEEGLQ 181 (390)
T ss_pred hHHHHH----HHHHHHHHHHHhhhhh
Confidence 888887 6777788888877654
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=72.05 E-value=50 Score=26.55 Aligned_cols=92 Identities=17% Similarity=-0.041 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAANMG-----DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----L 156 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g 156 (282)
-.++..+|..|..- .|.+.|++.|.++-+.. -.+.++++-.+... ..|+.....+..+|-.. |
T Consensus 36 r~~~~~l~~~~~~~----Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 36 RMALEDLADHYCKI----GDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHHHHh----hhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhccc
Confidence 34677788887765 46788888888876542 23444555444444 44556777777766443 3
Q ss_pred CHHHHHHH----HHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 157 HPGALYLL----GTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 157 ~~~A~~~L----g~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
+.+....| |..++. .+++..|...|..+.
T Consensus 108 d~~~~nrlk~~~gL~~l~----~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANLA----QRDFKEAAELFLDSL 140 (177)
T ss_pred hHHHHHHHHHHHHHHHHH----hchHHHHHHHHHccC
Confidence 33333322 333444 678888888887764
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=72.02 E-value=69 Score=28.15 Aligned_cols=135 Identities=15% Similarity=0.057 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc---C
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL------HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK---G 192 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g------~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---g 192 (282)
.+.+..++.+....+.. +.|...+.++...+ .+...+.-+.+... .++..+|+..++..+.. +
T Consensus 146 ~~~~l~~a~~aRk~g~~----~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~----~g~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNF----QLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA----QGEQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred HHHHHHHHHHHHHCCCc----HHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhhh
Confidence 34555555555554444 66666666666544 45555555655555 56666666666555440 0
Q ss_pred ---------------------------------CHHHHHHHHHHHHcC--CCCcccHHHHHHHHHHHHH------HHchh
Q 023425 193 ---------------------------------HAGAAIAYGSLLLRG--VQVPECLTKLNAKRVSAAK------KARAN 231 (282)
Q Consensus 193 ---------------------------------~~~a~~~Lg~~y~~g--~g~~~~~~~A~~~~~~a~~------~a~~~ 231 (282)
.+.++..+|.+...- .-...+.+.+...|+.++. .+++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 123444555544441 0013556666777777765 34444
Q ss_pred chhc-------cC------------CCHHHHHHHHHHHHHhccHHHHHHHHH
Q 023425 232 LESN-------LM------------NPVEKAKEQFEVAAQAGCNLGLRWLQR 264 (282)
Q Consensus 232 lg~~-------~~------------~~~~~A~~~~~~Aa~~g~~~a~~~l~~ 264 (282)
.|.. .. .-...|+..|-+|+..|+..+...+-+
T Consensus 298 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~~~~~R 349 (352)
T PF02259_consen 298 WALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYVRQDLPR 349 (352)
T ss_pred HHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCchHHHhhH
Confidence 4411 00 013568888888888887755444433
No 283
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.66 E-value=68 Score=27.89 Aligned_cols=117 Identities=10% Similarity=-0.035 Sum_probs=54.9
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023425 127 ELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLR 206 (282)
Q Consensus 127 ~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~ 206 (282)
.-|.+|.+++.. ++|+....+ .+..++...=-.|+.. ..+.+.|..-.++..+-.+......|+..+..
T Consensus 113 ~aa~i~~~~~~~----deAl~~~~~---~~~lE~~Al~VqI~lk----~~r~d~A~~~lk~mq~ided~tLtQLA~awv~ 181 (299)
T KOG3081|consen 113 LAAIIYMHDGDF----DEALKALHL---GENLEAAALNVQILLK----MHRFDLAEKELKKMQQIDEDATLTQLAQAWVK 181 (299)
T ss_pred HhhHHhhcCCCh----HHHHHHHhc---cchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 334555553333 666665555 2223333222233333 44455555555555544444444445554443
Q ss_pred CCCCcccHHHHHHHHHHHHHHH----chhch----hccCCCHHHHHHHHHHHHHhc
Q 023425 207 GVQVPECLTKLNAKRVSAAKKA----RANLE----SNLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 207 g~g~~~~~~~A~~~~~~a~~~a----~~~lg----~~~~~~~~~A~~~~~~Aa~~g 254 (282)
--.....+..|+.+|+.-.+.- ....| .+..+++++|...++.|.+..
T Consensus 182 la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 2111222556666666655511 11122 224556666666666666644
No 284
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=70.80 E-value=69 Score=27.67 Aligned_cols=54 Identities=11% Similarity=-0.018 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHhcCC---CCCc-CHHHHHHHHHHHHh
Q 023425 65 IPLLKTAKENFELALEAD-NSNTHARYWLSKLHLKYH---VPGA-CKAMGAALLVDAAN 118 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~-~g~~~a~~~Lg~~~~~~~---~~~~-~~~~A~~~~~~Aa~ 118 (282)
.+|++.|..+|.|+-... ..+|...-.|+.++++-+ ...+ +++.|+.|+++|.+
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 466777777777775544 456666666666655331 1123 55666666666643
No 285
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.95 E-value=22 Score=21.54 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHH
Q 023425 162 YLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGA 196 (282)
Q Consensus 162 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a 196 (282)
+.|+..|.. .+|.+.|.+.++..+..|+...
T Consensus 3 LdLA~ayie----~Gd~e~Ar~lL~evl~~~~~~q 33 (44)
T TIGR03504 3 LDLARAYIE----MGDLEGARELLEEVIEEGDEAQ 33 (44)
T ss_pred hHHHHHHHH----cCChHHHHHHHHHHHHcCCHHH
Confidence 567777777 7778888888877777666443
No 286
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.88 E-value=22 Score=25.13 Aligned_cols=29 Identities=21% Similarity=0.057 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
..|..+++.++.. .+++++|+..++.|+.
T Consensus 41 ~~all~lA~~~~~----~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 41 AYALLNLAELHRR----FGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Confidence 4667788888887 7888888888888865
No 287
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.54 E-value=4.3 Score=36.17 Aligned_cols=80 Identities=9% Similarity=-0.091 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhcCCCCccCHHHH
Q 023425 106 KAMGAALLVDAANMG--DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLH--PGALYLLGTVYLTGDCVKKDIASA 181 (282)
Q Consensus 106 ~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~--~~A~~~Lg~~y~~g~g~~~d~~~A 181 (282)
.++|+..|..|++.. ...-+..-+.+++.-.. +..|+.-+..|++.+. ...+-.-|..... .+++++|
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k----p~~airD~d~A~ein~Dsa~~ykfrg~A~rl----lg~~e~a 201 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKK----PNAAIRDCDFAIEINPDSAKGYKFRGYAERL----LGNWEEA 201 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccC----CchhhhhhhhhhccCcccccccchhhHHHHH----hhchHHH
Confidence 466666666666543 33444445555555332 2566666666666532 2222223333333 5666666
Q ss_pred HHHHHHHHHcCC
Q 023425 182 LWCFHRASEKGH 193 (282)
Q Consensus 182 ~~~~~~A~~~g~ 193 (282)
.+.++.|++.+.
T Consensus 202 a~dl~~a~kld~ 213 (377)
T KOG1308|consen 202 AHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHhccc
Confidence 666666666654
No 288
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.33 E-value=10 Score=35.34 Aligned_cols=93 Identities=16% Similarity=0.082 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG--DPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.++++.|+..|.+|++++|+++.-+-+-+..+.. ..++..|+.=..+|++.. ...+++.=|.....+...
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~---- 88 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF---- 88 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH----
Confidence 3569999999999999999887655555544443 367788888888888754 334444444444333333
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHH
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLG 165 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg 165 (282)
.+|+.-|++.+.. +.+.+.-.+-
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 5666666655544 4555444443
No 289
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.03 E-value=8.9 Score=36.78 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYEL 128 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~L 128 (282)
...|-.++.+++.+....|-.++.+|.+|... .|.++|++.|++|.+. .++.....|
T Consensus 658 ~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l----~~i~~a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 658 HLDATKLLLQALAINSSEPLTFLSLGNAYLAL----KNISGALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred hccHHHHHHHHHhhcccCchHHHhcchhHHHH----hhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence 45566666666666666666677777777655 4457777777777653 345444444
No 290
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=68.02 E-value=1.4e+02 Score=30.26 Aligned_cols=81 Identities=12% Similarity=0.052 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCCcCCHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM-GDPDAQYELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~g~~~~~d~~~ 144 (282)
+..++|..+++.--...+.|....--|-.+|... ...++|+.+|++++.. +.-+-++.|=+.|.+...+.+.-+-
T Consensus 57 gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~----~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 57 GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDL----GKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHH----hhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444444334444444444555555544 2346666777776643 2244444444455553333333345
Q ss_pred HHHHHH
Q 023425 145 AFYYIE 150 (282)
Q Consensus 145 A~~~~~ 150 (282)
|++.|+
T Consensus 133 a~~LyK 138 (932)
T KOG2053|consen 133 ALQLYK 138 (932)
T ss_pred HHHHHH
Confidence 555555
No 291
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.97 E-value=75 Score=31.12 Aligned_cols=95 Identities=13% Similarity=0.037 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhcC---CCCCcCHHHHHHHHHHHHh--------CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH
Q 023425 86 THARYWLSKLHLKY---HVPGACKAMGAALLVDAAN--------MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~---~~~~~~~~~A~~~~~~Aa~--------~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~ 154 (282)
.++...+-.++.+. ....+++..+++||+.+.. ..++..+-+|..+|+. .+..++|.++++.|-+
T Consensus 347 kE~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~----L~QLD~A~E~~~EAE~ 422 (872)
T KOG4814|consen 347 KEAISCIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK----LEQLDNAVEVYQEAEE 422 (872)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHh
Confidence 45555555554433 2233788999999999964 2356778889999988 4555999999999988
Q ss_pred cC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 155 QL--HPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 155 ~g--~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
.+ ++-.++.+-..... .++.++|+.+..+.
T Consensus 423 ~d~~~~l~q~~~~~~~~~----E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 423 VDRQSPLCQLLMLQSFLA----EDKSEEALTCLQKI 454 (872)
T ss_pred hccccHHHHHHHHHHHHH----hcchHHHHHHHHHH
Confidence 75 88888887777766 77788888877654
No 292
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.40 E-value=24 Score=24.96 Aligned_cols=48 Identities=21% Similarity=0.094 Sum_probs=32.6
Q ss_pred ccCHHHHHHHHHHHHH----cC-------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 175 KKDIASALWCFHRASE----KG-------HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 175 ~~d~~~A~~~~~~A~~----~g-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+|+..|++.+.+..+ .+ ...+..+++.++.. .+++++|...++.|+.
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~----~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR----FGHYEEALQALEEAIR 69 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Confidence 4677777665555533 22 25678888888887 7788888877766655
No 293
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.25 E-value=41 Score=30.29 Aligned_cols=76 Identities=13% Similarity=-0.012 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---CCHHHH---HHHHHHHhcCCCCcc
Q 023425 105 CKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ---LHPGAL---YLLGTVYLTGDCVKK 176 (282)
Q Consensus 105 ~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~---g~~~A~---~~Lg~~y~~g~g~~~ 176 (282)
-+++|.+.-++|++. .+..|...++-++....+. +++.++..+.-+. +...+. +..+.+|.+ ..
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~----Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE----~a 261 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRH----KEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE----GA 261 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchh----hhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc----cc
Confidence 346777777777654 3566666677776665555 6777766665443 444443 335666666 36
Q ss_pred CHHHHHHHHHHH
Q 023425 177 DIASALWCFHRA 188 (282)
Q Consensus 177 d~~~A~~~~~~A 188 (282)
.++.|++.|.+-
T Consensus 262 eye~aleIyD~e 273 (491)
T KOG2610|consen 262 EYEKALEIYDRE 273 (491)
T ss_pred chhHHHHHHHHH
Confidence 677777777653
No 294
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=64.96 E-value=97 Score=30.80 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 156 LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 156 g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
+-.+|..++|..+.+ ...++.|.++|.+.-.
T Consensus 794 ~~e~A~r~ig~~fa~----~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAE----MMEWEEAAKYYSYCGD 824 (1189)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHhccc
Confidence 346788889998888 8889999999987644
No 295
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=64.71 E-value=21 Score=27.04 Aligned_cols=45 Identities=7% Similarity=0.009 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH------HhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 107 AMGAALLVDAANMGDPDAQYELGCR------LRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 107 ~~A~~~~~~Aa~~g~~~A~~~Lg~~------y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
+.|+.||.+=-++...+.-.+++.+ +...++. ++|+..|+++.+.
T Consensus 79 ~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~----~eA~~~fr~agEM 129 (144)
T PF12968_consen 79 DRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRK----EEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-H----HHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHH
Confidence 6677777777666554444444444 4443344 8999999998774
No 296
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=63.62 E-value=1.7e+02 Score=29.47 Aligned_cols=68 Identities=18% Similarity=0.048 Sum_probs=44.3
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhc------------hhccCC-CHHH
Q 023425 176 KDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANL------------ESNLMN-PVEK 242 (282)
Q Consensus 176 ~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~l------------g~~~~~-~~~~ 242 (282)
.-++-|+.+-+.++....++....++..+.. .+.++.|-+.|-.|+...-+|+ -.+..+ .+++
T Consensus 977 ~afd~afdlari~~k~k~~~vhlk~a~~led----egk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~ 1052 (1636)
T KOG3616|consen 977 CAFDFAFDLARIAAKDKMGEVHLKLAMFLED----EGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEE 1052 (1636)
T ss_pred cchhhHHHHHHHhhhccCccchhHHhhhhhh----ccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHH
Confidence 3455666666666666677777778877777 7778888888888887433333 233333 4666
Q ss_pred HHHHH
Q 023425 243 AKEQF 247 (282)
Q Consensus 243 A~~~~ 247 (282)
|+..|
T Consensus 1053 av~mf 1057 (1636)
T KOG3616|consen 1053 AVEMF 1057 (1636)
T ss_pred HHHHh
Confidence 66665
No 297
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=63.53 E-value=15 Score=24.39 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 023425 68 LKTAKENFELAL 79 (282)
Q Consensus 68 ~~~A~~~~~~a~ 79 (282)
+++|+.+|++|+
T Consensus 21 ~~~A~~~Y~~ai 32 (69)
T PF04212_consen 21 YEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 298
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=62.30 E-value=24 Score=20.28 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 160 ALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 160 A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
..+.+|..+.. .+++++|++.
T Consensus 3 ~~y~~a~~~y~----~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQ----KGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHH----TT-HHHHHHH
T ss_pred HHHHHHHHHHH----HhhHHHHHHH
Confidence 44555555555 5666666666
No 299
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.26 E-value=83 Score=27.44 Aligned_cols=101 Identities=22% Similarity=0.148 Sum_probs=64.8
Q ss_pred CCchhhHHHHHHHHHHHHH----cCCC--CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHh
Q 023425 62 RRLIPLLKTAKENFELALE----ADNS--NTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLR 133 (282)
Q Consensus 62 ~~~~~~~~~A~~~~~~a~~----~~~g--~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 133 (282)
....+|.+.|..+|+..-. ++.+ .....-+.+.+|. ...|+..|...|.+.... .++.+-.+=+.++.
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l----g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL----GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee----cccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 3344778888888884432 2212 2222223333443 347889999999988854 46777777777777
Q ss_pred cCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhc
Q 023425 134 VENDYVQSDQQAFYYIEKAVDQL-----HPGALYLLGTVYLT 170 (282)
Q Consensus 134 ~g~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~ 170 (282)
.-++. ..|++-.+.+.... +..-.++|-.+|.-
T Consensus 298 Ylg~l----~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL 335 (366)
T KOG2796|consen 298 YLGKL----KDALKQLEAMVQQDPRHYLHESVLFNLTTMYEL 335 (366)
T ss_pred HHHHH----HHHHHHHHHHhccCCccchhhhHHHHHHHHHHH
Confidence 64444 89999999888873 33445667777764
No 300
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.05 E-value=1.5e+02 Score=28.23 Aligned_cols=128 Identities=14% Similarity=-0.053 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAANMGD-----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----L 156 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g 156 (282)
+-+--.||..-.....-|+...+++++++--....- +..+..||.+++. +.+|.+.|...+++|-.. +
T Consensus 5 Ava~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~---yT~N~elAksHLekA~~i~~~ip 81 (629)
T KOG2300|consen 5 AVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLR---YTKNVELAKSHLEKAWLISKSIP 81 (629)
T ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHcccc
Confidence 333333444433222244677888888877765432 2345556766543 255668888888888653 1
Q ss_pred -----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHH----HHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 023425 157 -----HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAG----AAIAYGSLLLRGVQVPECLTKLNAKRVS 223 (282)
Q Consensus 157 -----~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 223 (282)
.-++...|+.+|..- .+.+..+...+++|++. +.|. -.+.|+.++.- ++|++-|.+.+..
T Consensus 82 ~fydvKf~a~SlLa~lh~~~---~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~i----dkD~~sA~elLav 152 (629)
T KOG2300|consen 82 SFYDVKFQAASLLAHLHHQL---AQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHII----DKDFPSALELLAV 152 (629)
T ss_pred cHHhhhhHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh----hccchhHHHHHhc
Confidence 235666778888772 33677788888888764 4443 34556666654 6777766665433
No 301
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.67 E-value=96 Score=26.24 Aligned_cols=47 Identities=23% Similarity=0.082 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHhcCCCCCcCHHHHHHHHHHHHhCCC
Q 023425 66 PLLKTAKENFELALEADNSNTHARY-WLSKLHLKYHVPGACKAMGAALLVDAANMGD 121 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~-~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~ 121 (282)
++++.|+++...|++.+..-|+-+- .++.+.. ++-..|-+++.+.|.
T Consensus 97 Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va---------eev~~~A~~~~~ag~ 144 (230)
T PHA02537 97 GDFDGALEIAEYALEHGLTMPDQFRRTLANFVA---------EEVANAALKAASAGE 144 (230)
T ss_pred cCHHHHHHHHHHHHHcCCCCCccccCCchHHHH---------HHHHHHHHHHHHcCC
Confidence 7788888888888776555554433 3333333 555667777776664
No 302
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.91 E-value=49 Score=32.35 Aligned_cols=75 Identities=9% Similarity=0.060 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCC
Q 023425 139 VQSDQQAFYYIEKAVDQ--------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLLRGV 208 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~~--------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~ 208 (282)
.+|+..+++||+.+..- ..+..+.+|..||+. ....++|+++++.|-+-+ .+..++.+-.....
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~----L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~-- 440 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK----LEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA-- 440 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH--
Confidence 57889999999998763 357788899999999 889999999999996654 67776666655554
Q ss_pred CCcccHHHHHHHH
Q 023425 209 QVPECLTKLNAKR 221 (282)
Q Consensus 209 g~~~~~~~A~~~~ 221 (282)
..+-++|....
T Consensus 441 --E~~Se~AL~~~ 451 (872)
T KOG4814|consen 441 --EDKSEEALTCL 451 (872)
T ss_pred --hcchHHHHHHH
Confidence 44444454433
No 303
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=60.36 E-value=22 Score=30.10 Aligned_cols=63 Identities=17% Similarity=0.084 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG---DPDAQYELGCR 131 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~ 131 (282)
..|.+.|.+.|.+|++.-|.....|+.+|.+.+.. .+.+.|.+-|++.++.+ +..|...|+.+
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~eka----g~~daAa~a~~~~L~ldp~D~~gaa~kLa~l 73 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKA----GEFDAAAAAYEEVLELDPEDHGGAALKLAVL 73 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhc----ccHHHHHHHHHHHHcCCcccccchhhhHHhh
Confidence 35677888888888888888888888888887755 45588888888887643 44455555543
No 304
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.93 E-value=15 Score=25.13 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=10.4
Q ss_pred ccCHHHHHHHHHHHHH
Q 023425 175 KKDIASALWCFHRASE 190 (282)
Q Consensus 175 ~~d~~~A~~~~~~A~~ 190 (282)
.+++++|+.+|+.|++
T Consensus 19 ~g~y~eA~~~Y~~aie 34 (76)
T cd02681 19 EGRYSEAVFYYKEAAQ 34 (76)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4666677777766654
No 305
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=59.61 E-value=1.7e+02 Score=28.18 Aligned_cols=151 Identities=10% Similarity=0.027 Sum_probs=70.8
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhh---HHHHHHHHHHHHHcCCCCHH-HHHHHHHHHhcCCCCCcCHH
Q 023425 32 RNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPL---LKTAKENFELALEADNSNTH-ARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 32 ~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~~g~~~-a~~~Lg~~~~~~~~~~~~~~ 107 (282)
..+++...|+.++..+.......++..........+ .++...+|.+++....-++. ++..+=..-....| .+
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eG----lk 383 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEG----LK 383 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhh----HH
Confidence 356666677776665554444444433322211111 44445555555443222222 11111111111222 36
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHH-HHHHHhcCCCCccCHHHHHHHH
Q 023425 108 MGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-LHPGALYL-LGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 108 ~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-g~~~A~~~-Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
.|...|.+|-+.+...=+.-.+..+.+ ....+|..-|...|+-.... |+...+.. --..+.. ..|-..+...|
T Consensus 384 aaR~iF~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~----lNdd~N~R~LF 458 (656)
T KOG1914|consen 384 AARKIFKKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH----LNDDNNARALF 458 (656)
T ss_pred HHHHHHHHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH----hCcchhHHHHH
Confidence 677777777765433322222222211 11255667788888877765 44444332 2222222 45566677777
Q ss_pred HHHHHc
Q 023425 186 HRASEK 191 (282)
Q Consensus 186 ~~A~~~ 191 (282)
++++..
T Consensus 459 Er~l~s 464 (656)
T KOG1914|consen 459 ERVLTS 464 (656)
T ss_pred HHHHhc
Confidence 777665
No 306
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=59.40 E-value=50 Score=25.11 Aligned_cols=29 Identities=21% Similarity=0.076 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
+-.+.||+..+.. .+|.+-.++|++.|.+
T Consensus 50 VisCHNLA~FWR~----~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 50 VISCHNLADFWRS----QGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHhhHHHHHHH----cCChHHHHHHHHHHHH
Confidence 4456666666666 6666666777766655
No 307
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=59.18 E-value=19 Score=24.65 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 143 QQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 143 ~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
..|+.+.++|++.+. .+++++|+.+|..|++
T Consensus 4 ~~a~~l~~~Ave~D~-----------------~g~y~eAl~~Y~~aie 34 (77)
T cd02683 4 LAAKEVLKRAVELDQ-----------------EGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHH-----------------hccHHHHHHHHHHHHH
Confidence 566666666655322 4667777777777664
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=59.03 E-value=90 Score=24.79 Aligned_cols=66 Identities=12% Similarity=-0.071 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC
Q 023425 33 NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKY 99 (282)
Q Consensus 33 ~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~ 99 (282)
.+++...+ .++..+.+.........+.-+...+++.+|+..|+...+..|+.|.+.-.++.++...
T Consensus 26 ~~D~e~lL-~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 26 PDDAEALL-DALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred hHHHHHHH-HHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34443333 3344444333333333333333345577777777777666666666666666666543
No 309
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=59.01 E-value=21 Score=24.34 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 142 DQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 142 ~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
.++|+...++|++.+. .+++++|+.+|..|++
T Consensus 3 l~~Ai~lv~~Av~~D~-----------------~g~y~eA~~lY~~ale 34 (75)
T cd02684 3 LEKAIALVVQAVKKDQ-----------------RGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHHH-----------------hccHHHHHHHHHHHHH
Confidence 4566666666654322 4666666666666654
No 310
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.66 E-value=1.2e+02 Score=26.17 Aligned_cols=114 Identities=13% Similarity=-0.064 Sum_probs=68.8
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 023425 55 DYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRV 134 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~ 134 (282)
....|+.....+++.+|...|+.|+-. |-.+-... . .--.+|.+.... ...-+.|+..+++.
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~----------l~~L~lkE--k----P~e~eW~eLdk~--~tpLllNy~QC~L~ 242 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIIC----------LRNLQLKE--K----PGEPEWLELDKM--ITPLLLNYCQCLLK 242 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHH----------HHHHHhcc--C----CCChHHHHHHHh--hhHHHHhHHHHHhh
Confidence 345556666677788888888888631 11111100 0 111144443332 34556677777766
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCH
Q 023425 135 ENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHA 194 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~ 194 (282)
..++-++++.-...... ++..|+|.-|..... .=+..+|..=|+++++...+
T Consensus 243 ----~~e~yevleh~seiL~~~~~nvKA~frRakAhaa----~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 243 ----KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAA----VWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred ----HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhcChh
Confidence 34446777777766665 778888888877766 55677787778887776543
No 311
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=57.48 E-value=34 Score=31.27 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=21.9
Q ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023425 175 KKDIASALWCFHRASEKGHAGAAIAYGSLLLR 206 (282)
Q Consensus 175 ~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~ 206 (282)
..-+.+|++|+++|-...+|+.+.+++.++..
T Consensus 331 ~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~ 362 (404)
T PF12753_consen 331 QELIKKALEYLKKAQDEDDPETWVDVAEAMID 362 (404)
T ss_dssp HHHHHHHHHHHHHHHHS--TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHHHhh
Confidence 33467899999999988887766666666654
No 312
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=56.52 E-value=21 Score=24.50 Aligned_cols=13 Identities=15% Similarity=0.049 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHH
Q 023425 68 LKTAKENFELALE 80 (282)
Q Consensus 68 ~~~A~~~~~~a~~ 80 (282)
+++|+.+|+.|++
T Consensus 22 y~eA~~~Y~~aie 34 (76)
T cd02681 22 YSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666654
No 313
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=55.92 E-value=65 Score=33.18 Aligned_cols=47 Identities=13% Similarity=-0.041 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 141 SDQQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 141 d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+..+|+.-|++--.. |-|--+..-+.+|.. .+++++-+++|..|...
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 534 DFTQALSEFSYLHGGVGAPLEYLGKALVYQR----LGEYNEEIKSLLLALKR 581 (932)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHhHHHHHHH----hhhHHHHHHHHHHHHHh
Confidence 345555555554433 444444445556666 66777777777777653
No 314
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=54.93 E-value=99 Score=24.02 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHH
Q 023425 120 GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLL 164 (282)
Q Consensus 120 g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~L 164 (282)
-+|+-...+|..|..-+.. .++-+.+.+|++.|-.+|+.++
T Consensus 118 ~~p~~L~kia~Ay~klg~~----r~~~ell~~ACekG~kEAC~nI 158 (161)
T PF09205_consen 118 INPEFLVKIANAYKKLGNT----REANELLKEACEKGLKEACRNI 158 (161)
T ss_dssp S-HHHHHHHHHHHHHTT-H----HHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcch----hhHHHHHHHHHHhchHHHHHHh
Confidence 4667777777777774444 7777777777777777777664
No 315
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=54.91 E-value=22 Score=24.03 Aligned_cols=13 Identities=46% Similarity=0.440 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHhh
Q 023425 33 NKKAMELIAKGWS 45 (282)
Q Consensus 33 ~~~A~e~~~~~~~ 45 (282)
+++|++++.+|++
T Consensus 5 ~~~A~~li~~Av~ 17 (77)
T smart00745 5 LSKAKELISKALK 17 (77)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666655544
No 316
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.18 E-value=56 Score=31.10 Aligned_cols=56 Identities=23% Similarity=0.116 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 023425 162 YLLGTVYLTGDCVKKDIASALWCFHRASEK---------GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSA 224 (282)
Q Consensus 162 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 224 (282)
+.+|.++.. .+|...|..+|...+++ -.|.|+|.||.+|..-.| ...++.+|+.+|
T Consensus 453 lL~g~~lR~----Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g---~~~e~~~~L~kA 517 (546)
T KOG3783|consen 453 LLKGVILRN----LGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGG---GLKEARALLLKA 517 (546)
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhccc---ChHHHHHHHHHH
Confidence 457888888 88999999999998854 148899999999988433 344444444443
No 317
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.14 E-value=1.4e+02 Score=25.59 Aligned_cols=106 Identities=10% Similarity=-0.058 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCC--
Q 023425 66 PLLKTAKENFELALE--ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQS-- 141 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~--~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d-- 141 (282)
+++++|++.+...+. ++.+-..+-..|+.++. +.|+++-..-+.+..-+|..++..-....+.
T Consensus 4 kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lli-------------ev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 4 KKYDEAIDLLYSGALILLKHGQYGSGADLALLLI-------------EVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-------------HHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 346777777666543 22233334444554433 2233332222344445566555432211111
Q ss_pred --HHHHHHHHHHH-HHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 142 --DQQAFYYIEKA-VDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 142 --~~~A~~~~~kA-a~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
.+.|+.|-+.. -..|+|+-+..+|..|.+ .+++.+|..+|-.+
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWK----EGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHH----TT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHh----hccHHHHHHHHHhc
Confidence 36788888211 234899999999999998 78999999888765
No 318
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=53.92 E-value=52 Score=31.53 Aligned_cols=65 Identities=15% Similarity=-0.024 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM-------GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~-------g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~ 154 (282)
-+|.|+-+||.+-..... .+...++.+|.+|+.. -+.--+..+|..|++ ..++.+|+..+-.|++
T Consensus 275 ~YPmALg~LadLeEi~pt--~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR----~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPT--PGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR----HKRYREALRSWAEAAD 346 (618)
T ss_dssp T-HHHHHHHHHHHHHS----TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred hCchhhhhhHhHHhhccC--CCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH----HHHHHHHHHHHHHHHH
Confidence 589999999999774422 3446778999999853 356677888888877 4556999999998876
No 319
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=53.06 E-value=3.3e+02 Score=31.10 Aligned_cols=134 Identities=14% Similarity=0.029 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC-------
Q 023425 121 DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH------- 193 (282)
Q Consensus 121 ~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~------- 193 (282)
-.+.+..++.+-...+.. +.|..+.-+|.+.+-+.+....+..... .+|..+|+..+++.++...
T Consensus 1669 ~ge~wLqsAriaR~aG~~----q~A~nall~A~e~r~~~i~~E~AK~lW~----~gd~~~Al~~Lq~~l~~~~~~~~~~~ 1740 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHL----QRAQNALLNAKESRLPEIVLERAKLLWQ----TGDELNALSVLQEILSKNFPDLHTPY 1740 (2382)
T ss_pred hHHHHHHHHHHHHhcccH----HHHHHHHHhhhhcccchHHHHHHHHHHh----hccHHHHHHHHHHHHHhhcccccCCc
Confidence 345566666666554555 8999999999999999999999999888 8999999999999986422
Q ss_pred ------------HHHHHHHHHHHHcCCCCcccH--HHHHHHHHHHHH------HHchhchh--------------ccCCC
Q 023425 194 ------------AGAAIAYGSLLLRGVQVPECL--TKLNAKRVSAAK------KARANLES--------------NLMNP 239 (282)
Q Consensus 194 ------------~~a~~~Lg~~y~~g~g~~~~~--~~A~~~~~~a~~------~a~~~lg~--------------~~~~~ 239 (282)
..+...++.+... ..+. ..-.++|..+.+ .+++.+|. ...++
T Consensus 1741 ~~~p~~~n~~i~~~~~L~~~~~~~e----s~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~ 1816 (2382)
T KOG0890|consen 1741 TDTPQSVNLLIFKKAKLKITKYLEE----SGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGR 1816 (2382)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhccccccccc
Confidence 2255566665554 3332 223577877766 46666661 12334
Q ss_pred HHH---HHHHHHHHHHhccHHHHHHHHHHH
Q 023425 240 VEK---AKEQFEVAAQAGCNLGLRWLQRIE 266 (282)
Q Consensus 240 ~~~---A~~~~~~Aa~~g~~~a~~~l~~l~ 266 (282)
+.. ++.+|.+|...|+..-...+-++.
T Consensus 1817 ~~~~l~~~~~~~~sl~yg~~~iyqsmPRll 1846 (2382)
T KOG0890|consen 1817 VLSLLKAIYFFGRALYYGNQHLYQSMPRLL 1846 (2382)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHhhhHHH
Confidence 333 788889999999777665544443
No 320
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.83 E-value=1.5e+02 Score=25.57 Aligned_cols=90 Identities=14% Similarity=0.029 Sum_probs=48.4
Q ss_pred hhhcccchHHHHHHHHHHhhhhhHHH--------------H---HHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHH
Q 023425 26 KRWLHSRNKKAMELIAKGWSALKEVD--------------R---VIDYCELNDRRLIPLLKTAKENFELALEADNSNTHA 88 (282)
Q Consensus 26 ~~~~~~~~~~A~e~~~~~~~~~~~~~--------------~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a 88 (282)
.-...+++++|...|..++.-+.+.. . ....++-.=..+.+++-+++++-...+..+|++..|
T Consensus 187 ~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA 266 (329)
T KOG0545|consen 187 RLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKA 266 (329)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34557889999988887765443211 0 111111112233455666666666666666666666
Q ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC
Q 023425 89 RYWLSKLHLKYHVPGACKAMGAALLVDAANM 119 (282)
Q Consensus 89 ~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~ 119 (282)
+|.-|..+..- =+..+|..=|.++.+.
T Consensus 267 ~frRakAhaa~----Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 267 YFRRAKAHAAV----WNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHhh----cCHHHHHHHHHHHHhc
Confidence 66666555432 2235555555555544
No 321
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.29 E-value=1.8e+02 Score=26.32 Aligned_cols=143 Identities=10% Similarity=-0.047 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC---CCHHHHH---HHHHHHhcCCCCcC
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM---GDPDAQY---ELGCRLRVENDYVQ 140 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~---g~~~A~~---~Lg~~y~~g~~~~~ 140 (282)
++.+|...+.+.++--|.+--|...--..+...+ +...-...+++.+.. +.|-.-| .++..+.+-+.+
T Consensus 118 ~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G----~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y-- 191 (491)
T KOG2610|consen 118 KHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNG----NQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY-- 191 (491)
T ss_pred cccHHHHHHHHHHHhCchhhhhhhhhhhHHHhcc----chhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc--
Confidence 3677777777887665665555444444444221 223333455666533 3322111 223334444455
Q ss_pred CHHHHHHHHHHHHHcCC--HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH---cCCHHHH---HHHHHHHHcCCCCcc
Q 023425 141 SDQQAFYYIEKAVDQLH--PGALYLLGTVYLTGDCVKKDIASALWCFHRASE---KGHAGAA---IAYGSLLLRGVQVPE 212 (282)
Q Consensus 141 d~~~A~~~~~kAa~~g~--~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~g~~~a~---~~Lg~~y~~g~g~~~ 212 (282)
++|.+.-.+|++.+. .-|...++.++.. .++++++.++..+.-+ ++...+. ...+.+|..| .
T Consensus 192 --~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem----~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~----a 261 (491)
T KOG2610|consen 192 --DDAEKQADRALQINRFDCWASHAKAHVLEM----NGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG----A 261 (491)
T ss_pred --hhHHHHHHhhccCCCcchHHHHHHHHHHHh----cchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc----c
Confidence 899999999998864 4555778888887 8999999999988644 4555554 3457777774 5
Q ss_pred cHHHHHHHHHHHH
Q 023425 213 CLTKLNAKRVSAA 225 (282)
Q Consensus 213 ~~~~A~~~~~~a~ 225 (282)
.+++|...|.+-+
T Consensus 262 eye~aleIyD~ei 274 (491)
T KOG2610|consen 262 EYEKALEIYDREI 274 (491)
T ss_pred chhHHHHHHHHHH
Confidence 6777777776554
No 322
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=52.12 E-value=34 Score=21.62 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHH
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAA 197 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~ 197 (282)
++.|.|+..+.. .+++++|+.+.+..++. ++..|.
T Consensus 2 d~lY~lAig~yk----l~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 2 DCLYYLAIGHYK----LGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hhHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 456778888777 88888998888888664 455554
No 323
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=50.40 E-value=37 Score=23.13 Aligned_cols=12 Identities=25% Similarity=0.446 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhh
Q 023425 34 KKAMELIAKGWS 45 (282)
Q Consensus 34 ~~A~e~~~~~~~ 45 (282)
++|++++.+|+.
T Consensus 4 ~~Ai~lv~~Av~ 15 (75)
T cd02684 4 EKAIALVVQAVK 15 (75)
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 324
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=49.50 E-value=51 Score=23.23 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 119 MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 119 ~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
++++++.+.|+..+...+.+ +.|++.+......
T Consensus 19 P~D~~ar~~lA~~~~~~g~~----e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDY----EEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-H----HHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHh
Confidence 44555555555555553333 5555555554443
No 325
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=47.95 E-value=33 Score=20.01 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 160 ALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 160 A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
.+..||.+-.. ..++++|+.=|+++++
T Consensus 3 v~~~Lgeisle----~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLE----NENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHH----hccHHHHHHHHHHHHH
Confidence 44556666555 5666666666666654
No 326
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=47.94 E-value=26 Score=31.99 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHcCC
Q 023425 142 DQQAFYYIEKAVDQLH 157 (282)
Q Consensus 142 ~~~A~~~~~kAa~~g~ 157 (282)
+++|...+++|=..++
T Consensus 378 Y~eAE~iL~kAN~at~ 393 (404)
T PF12753_consen 378 YKEAEKILKKANKATN 393 (404)
T ss_dssp HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhhccc
Confidence 4555555555555433
No 327
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=47.77 E-value=35 Score=23.05 Aligned_cols=9 Identities=56% Similarity=0.818 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 023425 35 KAMELIAKG 43 (282)
Q Consensus 35 ~A~e~~~~~ 43 (282)
+|++++.+|
T Consensus 5 ~A~~l~~~A 13 (75)
T cd02678 5 KAIELVKKA 13 (75)
T ss_pred HHHHHHHHH
Confidence 444444444
No 328
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.38 E-value=36 Score=29.96 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
.+|+.++|..|-+ ..|.+.+++|..+
T Consensus 115 ~ea~~n~aeyY~q----i~D~~ng~~~~~~ 140 (412)
T COG5187 115 SEADRNIAEYYCQ----IMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHH----HhhhhhHHHHHHH
Confidence 3444455555544 4444444444443
No 329
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=46.86 E-value=2.4e+02 Score=26.13 Aligned_cols=191 Identities=13% Similarity=0.016 Sum_probs=124.4
Q ss_pred hhhhhcccchHHHHHHHHHHhhhhh------HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Q 023425 24 HQKRWLHSRNKKAMELIAKGWSALK------EVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHL 97 (282)
Q Consensus 24 ~~~~~~~~~~~~A~e~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~ 97 (282)
-..+.-.++.+.|+.+......... +....+.+.......+.-|...|...-..+..+.|+..-+-..-+..+.
T Consensus 195 Le~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf 274 (531)
T COG3898 195 LEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALF 274 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 3445567888999988776543221 2222233333333444466888888888999999999888888888888
Q ss_pred cCCCCCcCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHhcC
Q 023425 98 KYHVPGACKAMGAALLVDAANMG-DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD-----QLHPGALYLLGTVYLTG 171 (282)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~-----~g~~~A~~~Lg~~y~~g 171 (282)
.. .+..++-..++.+=+.. ||+ ++.+|..-... +-++.-++++.. .++.++...++..-+.
T Consensus 275 ~d----~~~rKg~~ilE~aWK~ePHP~----ia~lY~~ar~g----dta~dRlkRa~~L~slk~nnaes~~~va~aAld- 341 (531)
T COG3898 275 RD----GNLRKGSKILETAWKAEPHPD----IALLYVRARSG----DTALDRLKRAKKLESLKPNNAESSLAVAEAALD- 341 (531)
T ss_pred hc----cchhhhhhHHHHHHhcCCChH----HHHHHHHhcCC----CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh-
Confidence 65 34588888888886542 443 34444432222 334444444433 3788888888888777
Q ss_pred CCCccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH----HHchhch
Q 023425 172 DCVKKDIASALWCFHRASEKGH-AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----KARANLE 233 (282)
Q Consensus 172 ~g~~~d~~~A~~~~~~A~~~g~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~a~~~lg 233 (282)
-+++..|..--+.++.... ..++..|+.+-.-- .+|-.+...|..+++. -+|...|
T Consensus 342 ---a~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAe---tGDqg~vR~wlAqav~APrdPaW~adg 402 (531)
T COG3898 342 ---AGEFSAARAKAEAAAREAPRESAYLLLADIEEAE---TGDQGKVRQWLAQAVKAPRDPAWTADG 402 (531)
T ss_pred ---ccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhc---cCchHHHHHHHHHHhcCCCCCcccccC
Confidence 6888888887777777654 34455666666542 4677788889988887 3666666
No 330
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=46.58 E-value=1.4e+02 Score=23.24 Aligned_cols=31 Identities=6% Similarity=0.098 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
+.+++++.++..... ..|..+.+.+++....
T Consensus 33 ~s~f~lAwaLV~S~~-~~dv~~GI~iLe~l~~ 63 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRD-TEDVQEGIVILEDLLK 63 (149)
T ss_pred HHHHHHHHHHHcccc-hHHHHHhHHHHHHHhh
Confidence 344444444443221 3344445555544443
No 331
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=44.40 E-value=1e+02 Score=21.07 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhh
Q 023425 34 KKAMELIAKGWS 45 (282)
Q Consensus 34 ~~A~e~~~~~~~ 45 (282)
..|++++.+++.
T Consensus 4 ~~a~~l~~~Ave 15 (77)
T cd02683 4 LAAKEVLKRAVE 15 (77)
T ss_pred HHHHHHHHHHHH
Confidence 455666655544
No 332
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.33 E-value=2.4e+02 Score=25.39 Aligned_cols=93 Identities=16% Similarity=0.037 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH----hCC----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-
Q 023425 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAA----NMG----DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ- 155 (282)
Q Consensus 85 ~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa----~~g----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~- 155 (282)
-.+|+.+.+..|.+- .|.+.|++|+++.- ..| -.-....||.+|.+-.-+.++.++|-..+++..+-
T Consensus 103 v~ea~~~kaeYycqi----gDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWe 178 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQI----GDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWE 178 (393)
T ss_pred HHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChh
Confidence 356788888888866 57788888877764 344 34566778888876555667778888877776653
Q ss_pred --CC---HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 156 --LH---PGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 156 --g~---~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
+- -.+.+.++ .+|+++|-.+|..++.
T Consensus 179 RrNRlKvY~Gly~ms---------vR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 179 RRNRLKVYQGLYCMS---------VRNFKEAADLFLDSVS 209 (393)
T ss_pred hhhhHHHHHHHHHHH---------HHhHHHHHHHHHHHcc
Confidence 21 22223322 4667777777766543
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=43.58 E-value=2.8e+02 Score=25.97 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 156 LHPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 156 g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
.++.-|-.||...+. .+|++-|.++|+++
T Consensus 345 ~~~~~W~~Lg~~AL~----~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 345 DDPEKWKQLGDEALR----QGNIELAEECYQKA 373 (443)
T ss_dssp STHHHHHHHHHHHHH----TTBHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHhh
Confidence 456677778887777 78888888888875
No 334
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=42.35 E-value=47 Score=22.29 Aligned_cols=12 Identities=33% Similarity=0.332 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 023425 68 LKTAKENFELAL 79 (282)
Q Consensus 68 ~~~A~~~~~~a~ 79 (282)
+++|+.+|..|+
T Consensus 22 ~~~Al~~Y~~a~ 33 (75)
T cd02656 22 YEEALELYKEAL 33 (75)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 335
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=42.33 E-value=1.4e+02 Score=22.73 Aligned_cols=30 Identities=7% Similarity=-0.219 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Q 023425 194 AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK 227 (282)
Q Consensus 194 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 227 (282)
+.++.||+.++.. .+|.+...+|++-|.+.
T Consensus 50 VisCHNLA~FWR~----~gd~~yELkYLqlASE~ 79 (140)
T PF10952_consen 50 VISCHNLADFWRS----QGDSDYELKYLQLASEK 79 (140)
T ss_pred HHHHhhHHHHHHH----cCChHHHHHHHHHHHHH
Confidence 5579999999998 88888899999999884
No 336
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=41.90 E-value=1.3e+02 Score=21.78 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHhc
Q 023425 120 GDPDAQYELGCRLRV 134 (282)
Q Consensus 120 g~~~A~~~Lg~~y~~ 134 (282)
++++.+..|+.+|..
T Consensus 76 ~~~~~~~~l~~~y~~ 90 (118)
T PF07739_consen 76 GDPELLRGLAQMYVE 90 (118)
T ss_dssp --HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHc
Confidence 567777788888755
No 337
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=41.76 E-value=69 Score=21.82 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 023425 68 LKTAKENFELA 78 (282)
Q Consensus 68 ~~~A~~~~~~a 78 (282)
+++|+.+|+.+
T Consensus 22 y~eA~~~Y~~~ 32 (75)
T cd02677 22 YEAAFEFYRAG 32 (75)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 338
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=41.29 E-value=47 Score=28.24 Aligned_cols=67 Identities=18% Similarity=0.028 Sum_probs=48.4
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN-THARYWLSKLH 96 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~-~~a~~~Lg~~~ 96 (282)
..++.+.|.|.|.+++. +.......-+..+......++++.|.+.|++.++++|.+ ..+-..|+.+=
T Consensus 7 ~~~D~~aaaely~qal~-lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg 74 (287)
T COG4976 7 ESGDAEAAAELYNQALE-LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLG 74 (287)
T ss_pred ccCChHHHHHHHHHHhh-cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhc
Confidence 35678889999999886 433344455566666667788999999999999988755 44555666553
No 339
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=40.89 E-value=2.7e+02 Score=28.42 Aligned_cols=110 Identities=17% Similarity=0.090 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
..++.+|..-..+.+.-.|+-+-|-..=|..+.+.+.. ++|..+++.-... .+....-.|-.+|.+.+..
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~----~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~---- 93 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKG----DEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL---- 93 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCc----hhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh----
Confidence 48899999999999988888888777778777766444 8888666655433 4667777788899885555
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHH----HHHHHHH
Q 023425 143 QQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIA----SALWCFH 186 (282)
Q Consensus 143 ~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~----~A~~~~~ 186 (282)
++|+.+|++++.. ...+-++.|-.+|.. .+++. -|++.|+
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR----~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVR----EKSYKKQQKAALQLYK 138 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 9999999999987 446666777777776 44444 3555555
No 340
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.75 E-value=2.5e+02 Score=24.78 Aligned_cols=107 Identities=17% Similarity=0.003 Sum_probs=56.5
Q ss_pred cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHH-H--HHHhcCCCCccCH
Q 023425 104 ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLL-G--TVYLTGDCVKKDI 178 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~L-g--~~y~~g~g~~~d~ 178 (282)
.+...|...|..+.. +.+.++...|+.+|..-+.+ +.|...+...-..-...+...| + .++.. ..+.
T Consensus 148 e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~----e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q----aa~~ 219 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDV----EAAQAILAALPLQAQDKAAHGLQAQIELLEQ----AAAT 219 (304)
T ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCCh----HHHHHHHHhCcccchhhHHHHHHHHHHHHHH----HhcC
Confidence 566777777777753 45667777777777774444 7776666553222111111111 1 00111 1111
Q ss_pred HHHHHHHHH-HHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 023425 179 ASALWCFHR-ASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRV 222 (282)
Q Consensus 179 ~~A~~~~~~-A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 222 (282)
.+....=++ +.+.++..+.+.|+..|.. .++.+.|...+-
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~----~g~~e~Ale~Ll 260 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHL----VGRNEAALEHLL 260 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Confidence 111111122 2334678888888888877 677777765553
No 341
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=39.00 E-value=64 Score=24.72 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHL 97 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~ 97 (282)
.+.|.+.|+..++..|+|-.++..|-..+.
T Consensus 92 ~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 92 PENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 689999999999999999888776555444
No 342
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=38.83 E-value=1.3e+02 Score=29.05 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 121 DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 121 ~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
.|-|+.+||.+-.-.. ..+-+.++..|.+|+.. .|..-+.-+|-.|.. .+++.+|+.++-.|++
T Consensus 276 YPmALg~LadLeEi~p--t~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR----~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 276 YPMALGNLADLEEIDP--TPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR----HKRYREALRSWAEAAD 346 (618)
T ss_dssp -HHHHHHHHHHHHHS----TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhcc--CCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH----HHHHHHHHHHHHHHHH
Confidence 6889999998865321 12236678889888774 466677777777777 7999999999988855
No 343
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=38.24 E-value=1.3e+02 Score=20.56 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHH
Q 023425 69 KTAKENFELALEADNSNTHARY 90 (282)
Q Consensus 69 ~~A~~~~~~a~~~~~g~~~a~~ 90 (282)
.+|++.+.+++...|+++....
T Consensus 30 ~~aIe~L~q~~~~~pD~~~k~~ 51 (75)
T cd02682 30 KKAIEVLSQIVKNYPDSPTRLI 51 (75)
T ss_pred HHHHHHHHHHHHhCCChHHHHH
Confidence 3444444444445555555443
No 344
>PRK14700 recombination factor protein RarA; Provisional
Probab=37.90 E-value=2.9e+02 Score=24.44 Aligned_cols=64 Identities=14% Similarity=0.001 Sum_probs=30.2
Q ss_pred cCHHHHHHHHHHHHhCC-CHHHHHH-HHHHHhcCCC--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023425 104 ACKAMGAALLVDAANMG-DPDAQYE-LGCRLRVEND--YVQSDQQAFYYIEKAVDQLHPGALYLLGTV 167 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~~g-~~~A~~~-Lg~~y~~g~~--~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~ 167 (282)
.|.+.|+.|+-+-++.| +|..... |-.+-.+..+ -|.-...|...++.+-..|.|+|...|+.+
T Consensus 140 SDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~a 207 (300)
T PRK14700 140 TDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQA 207 (300)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 34455555555555555 4443222 1111111112 111233455555544445888888887755
No 345
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.96 E-value=3.2e+02 Score=24.74 Aligned_cols=48 Identities=19% Similarity=0.070 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG 120 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g 120 (282)
+..+-++.-..|++.+|..+.|+..|+.--. .-..+|.+.|++|.+.|
T Consensus 199 np~~RI~~A~~ALeIN~eCA~AyvLLAEEEa------~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 199 NPPARIKAAYQALEINNECATAYVLLAEEEA------TTIVDAERLFKQALKAG 246 (556)
T ss_pred CcHHHHHHHHHHHhcCchhhhHHHhhhhhhh------hhHHHHHHHHHHHHHHH
Confidence 3555666677888999999999988776332 23478889999998865
No 346
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=36.76 E-value=1.4e+02 Score=23.52 Aligned_cols=33 Identities=9% Similarity=-0.060 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLK 98 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~ 98 (282)
+++.+|+..|+...+..+..|-+.-.++.++.-
T Consensus 58 g~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 58 GNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred CCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 447777777777776555556666666666653
No 347
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.69 E-value=1.5e+02 Score=28.33 Aligned_cols=107 Identities=12% Similarity=-0.037 Sum_probs=66.1
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC---------CC
Q 023425 52 RVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHA-RYWLSKLHLKYHVPGACKAMGAALLVDAANM---------GD 121 (282)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a-~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~---------g~ 121 (282)
-..++..+-....+++..++..-++.----++++.-- .+.+|.++.+.+ +...|..+|...++. -.
T Consensus 414 El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg----~~~~a~~~f~i~~~~e~~~~~d~w~~ 489 (546)
T KOG3783|consen 414 ELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLG----DSEVAPKCFKIQVEKESKRTEDLWAV 489 (546)
T ss_pred HHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHhhccccccc
Confidence 3444444444444555555444444332113232222 234588887663 778899999988731 25
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL-HPGALYLLG 165 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg 165 (282)
|.|+|.||.+|.+.++ -..++..|+.+|=+-+ +-+-..+|+
T Consensus 490 PfA~YElA~l~~~~~g---~~~e~~~~L~kAr~~~~dY~lenRLh 531 (546)
T KOG3783|consen 490 PFALYELALLYWDLGG---GLKEARALLLKAREYASDYELENRLH 531 (546)
T ss_pred cHHHHHHHHHHHhccc---ChHHHHHHHHHHHhhccccchhhHHH
Confidence 8899999999988665 2399999999997764 444444444
No 348
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=35.53 E-value=1.7e+02 Score=26.58 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHH
Q 023425 240 VEKAKEQFEVAAQAGCNLGLRWLQRI 265 (282)
Q Consensus 240 ~~~A~~~~~~Aa~~g~~~a~~~l~~l 265 (282)
.+.|...+.+|...=.......+.++
T Consensus 209 ~~~A~~~L~~Ai~~fP~vl~~Ll~~l 234 (360)
T PF04910_consen 209 SESADEALQKAILRFPWVLVPLLDKL 234 (360)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 36677777777766555555555544
No 349
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.31 E-value=4.5e+02 Score=25.90 Aligned_cols=70 Identities=17% Similarity=0.067 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHH
Q 023425 70 TAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYI 149 (282)
Q Consensus 70 ~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~ 149 (282)
+...+.++|++. ..+|.--+.|+.-+ .+.+.| +..|.+..+..-+-.||......... ..|.++|
T Consensus 625 e~~g~~e~AL~~-s~D~d~rFelal~l-------grl~iA---~~la~e~~s~~Kw~~Lg~~al~~~~l----~lA~EC~ 689 (794)
T KOG0276|consen 625 ESQGMKEQALEL-STDPDQRFELALKL-------GRLDIA---FDLAVEANSEVKWRQLGDAALSAGEL----PLASECF 689 (794)
T ss_pred hhccchHhhhhc-CCChhhhhhhhhhc-------CcHHHH---HHHHHhhcchHHHHHHHHHHhhcccc----hhHHHHH
Confidence 334445556654 34555555555433 233554 33445556666777777777764444 7777777
Q ss_pred HHHHH
Q 023425 150 EKAVD 154 (282)
Q Consensus 150 ~kAa~ 154 (282)
.+|-+
T Consensus 690 ~~a~d 694 (794)
T KOG0276|consen 690 LRARD 694 (794)
T ss_pred Hhhcc
Confidence 77755
No 350
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.21 E-value=5.9e+02 Score=26.99 Aligned_cols=100 Identities=16% Similarity=0.002 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHH
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAF 146 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~ 146 (282)
-+++|+..|++- + -+..|..-| ..+- .+.+.|.++-+ .-+.|.-|..||..-++++.+ ++|+
T Consensus 1063 LyEEAF~ifkkf---~-~n~~A~~VL---ie~i----~~ldRA~efAe---~~n~p~vWsqlakAQL~~~~v----~dAi 1124 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKF---D-MNVSAIQVL---IENI----GSLDRAYEFAE---RCNEPAVWSQLAKAQLQGGLV----KDAI 1124 (1666)
T ss_pred HHHHHHHHHHHh---c-ccHHHHHHH---HHHh----hhHHHHHHHHH---hhCChHHHHHHHHHHHhcCch----HHHH
Confidence 388999999887 2 244444322 1111 23355544333 345678889999999998888 9999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 147 YYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 147 ~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+-|-|| .+|.++...-..-.. .+.+++=++|+..|-..
T Consensus 1125 eSyika---dDps~y~eVi~~a~~----~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1125 ESYIKA---DDPSNYLEVIDVASR----TGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHhc---CCcHHHHHHHHHHHh----cCcHHHHHHHHHHHHHh
Confidence 988765 567777776666666 78888888888877554
No 351
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.76 E-value=2e+02 Score=25.71 Aligned_cols=60 Identities=20% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-cCCCCcccHH-HHHH
Q 023425 142 DQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLL-RGVQVPECLT-KLNA 219 (282)
Q Consensus 142 ~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~-~g~g~~~~~~-~A~~ 219 (282)
.++|+.+-++|++.+++ +++++|+.+|+-|++ +|.+..-|+ ++......+. +..+
T Consensus 7 l~kaI~lv~kA~~eD~a-----------------~nY~eA~~lY~~ale------YF~~~lKYE~~~~kaKd~IraK~~E 63 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNA-----------------KNYEEALRLYQNALE------YFLHALKYEANNKKAKDSIRAKFTE 63 (439)
T ss_pred HHHHHHHHHHHhhhcch-----------------hchHHHHHHHHHHHH------HHHHHHHhhhcChhHHHHHHHHHHH
Q ss_pred HHHHH
Q 023425 220 KRVSA 224 (282)
Q Consensus 220 ~~~~a 224 (282)
|+.+|
T Consensus 64 YLdRA 68 (439)
T KOG0739|consen 64 YLDRA 68 (439)
T ss_pred HHHHH
No 352
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.38 E-value=4.8e+02 Score=27.95 Aligned_cols=163 Identities=14% Similarity=0.027 Sum_probs=98.3
Q ss_pred HHHHHHHH-HHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-------CCC---HHHHHHHHHHHhcCCC
Q 023425 69 KTAKENFE-LALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN-------MGD---PDAQYELGCRLRVEND 137 (282)
Q Consensus 69 ~~A~~~~~-~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-------~g~---~~A~~~Lg~~y~~g~~ 137 (282)
.+++..+. .--.+.|..+..+-.|+.++... .|.++|+.+-.+|+- ..+ ..++.+|+...+...
T Consensus 955 ~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~----~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~- 1029 (1236)
T KOG1839|consen 955 PESLNLLNNVMGVLHPEVASKYRSLAKLSNRL----GDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVK- 1029 (1236)
T ss_pred hhhhhHHHHhhhhcchhHHHHHHHHHHHHhhh----cchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhcc-
Confidence 34444554 22225667777778888887755 566888888888852 223 345555664444422
Q ss_pred CcCCHHHHHHHHHHHHHc-------CCHH---HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-----C-----CHHHH
Q 023425 138 YVQSDQQAFYYIEKAVDQ-------LHPG---ALYLLGTVYLTGDCVKKDIASALWCFHRASEK-----G-----HAGAA 197 (282)
Q Consensus 138 ~~~d~~~A~~~~~kAa~~-------g~~~---A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----g-----~~~a~ 197 (282)
+...|+..+.++... .+|+ .-.+++.++.. .++++.|+.+.+.|... | ....+
T Consensus 1030 ---~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~----v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1030 ---NLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLG----VEEADTALRYLESALAKNKKVLGPKELETALSY 1102 (1236)
T ss_pred ---CccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhh----HHHHHHHHHHHHHHHHHHhhhcCccchhhhhHH
Confidence 346677777777653 2332 23567888777 88899999999988653 2 35566
Q ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHH
Q 023425 198 IAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFE 248 (282)
Q Consensus 198 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~ 248 (282)
..++..+.. .+++..|....+..-..--..+|--.. +..++.+|..
T Consensus 1103 ~~~a~l~~s----~~dfr~al~~ek~t~~iy~~qlg~~hs-rt~~S~~~~~ 1148 (1236)
T KOG1839|consen 1103 HALARLFES----MKDFRNALEHEKVTYGIYKEQLGPDHS-RTKESSEWLN 1148 (1236)
T ss_pred HHHHHHHhh----hHHHHHHHHHHhhHHHHHHHhhCCCcc-cchhhHHHHH
Confidence 777777777 777777777666554432223332222 2334555554
No 353
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=32.32 E-value=2e+02 Score=29.81 Aligned_cols=83 Identities=17% Similarity=0.085 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhcCC---CCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCC
Q 023425 140 QSDQQAFYYIEKAVDQ-----LHPGALYLLGTVYLTGD---CVKKDIASALWCFHRASEK-GHAGAAIAYGSLLLRGVQV 210 (282)
Q Consensus 140 ~d~~~A~~~~~kAa~~-----g~~~A~~~Lg~~y~~g~---g~~~d~~~A~~~~~~A~~~-g~~~a~~~Lg~~y~~g~g~ 210 (282)
+.+++|+..|++..+. .--+|++++|...++.. +-+.++.+|+.-|++--.. |-|--+..-+.+|..
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 564 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQR---- 564 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHH----
Confidence 6778899999988885 34689999999888653 2245678888888775322 334445455566665
Q ss_pred cccHHHHHHHHHHHHH
Q 023425 211 PECLTKLNAKRVSAAK 226 (282)
Q Consensus 211 ~~~~~~A~~~~~~a~~ 226 (282)
..++++=++.|..|..
T Consensus 565 ~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 565 LGEYNEEIKSLLLALK 580 (932)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 6777777788777765
No 354
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.83 E-value=1.8e+02 Score=30.66 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=47.7
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHH-------HcCCCCcccHHHHHHHHHHH
Q 023425 153 VDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-GHAGAAIAYGSLL-------LRGVQVPECLTKLNAKRVSA 224 (282)
Q Consensus 153 a~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-g~~~a~~~Lg~~y-------~~g~g~~~~~~~A~~~~~~a 224 (282)
+....+...+.+|.+|+. .+...+|+++|.+|..- |.-.+...+.... .+|.-. -...+|.+||.++
T Consensus 915 c~vlk~v~rfmlg~~yl~----tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~-s~e~t~lhYYlkv 989 (1480)
T KOG4521|consen 915 CRVLKPVIRFMLGIAYLG----TGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTP-SEELTALHYYLKV 989 (1480)
T ss_pred hhhhHHHHHHhhheeeec----CCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCC-CchHHHHHHHHHH
Confidence 344556666788888887 89999999999999764 5566776665542 233222 2233478999999
Q ss_pred HH
Q 023425 225 AK 226 (282)
Q Consensus 225 ~~ 226 (282)
++
T Consensus 990 ~r 991 (1480)
T KOG4521|consen 990 VR 991 (1480)
T ss_pred HH
Confidence 87
No 355
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.82 E-value=1.9e+02 Score=29.16 Aligned_cols=71 Identities=17% Similarity=0.012 Sum_probs=35.9
Q ss_pred hhhcccchHHHHHHHHHHhhhhhHHH-------HHHHH--HhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 023425 26 KRWLHSRNKKAMELIAKGWSALKEVD-------RVIDY--CELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLH 96 (282)
Q Consensus 26 ~~~~~~~~~~A~e~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~ 96 (282)
+|+..|+-++|++..-..+....++. +.++- -...++.-....+.|++||++|.+..|.- .+-.+++.++
T Consensus 252 RRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL 330 (1226)
T KOG4279|consen 252 RRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLL 330 (1226)
T ss_pred ccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHH
Confidence 45667777888776665544222111 11111 11112223355677778888887765543 3334455554
Q ss_pred h
Q 023425 97 L 97 (282)
Q Consensus 97 ~ 97 (282)
.
T Consensus 331 ~ 331 (1226)
T KOG4279|consen 331 R 331 (1226)
T ss_pred H
Confidence 4
No 356
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.80 E-value=3e+02 Score=22.53 Aligned_cols=125 Identities=16% Similarity=0.077 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHcCCCC-H-HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC-CHH-----HHHHHHHHHhcCCCCc
Q 023425 68 LKTAKENFELALEADNSN-T-HARYWLSKLHLKYHVPGACKAMGAALLVDAANMG-DPD-----AQYELGCRLRVENDYV 139 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~-~-~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~-----A~~~Lg~~y~~g~~~~ 139 (282)
.++|+.-|.....-.-|. | -|....+.+.... .+...|+..|...+.-. .|. |-..-+.++.+.+.+
T Consensus 74 ~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~k----gdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy- 148 (221)
T COG4649 74 TDDALAAFTDLEKTGYGSYPVLARMRAATLLAQK----GDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY- 148 (221)
T ss_pred chHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhc----ccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH-
Confidence 577777777765432222 1 2444455555543 56689999999887532 333 333334455553333
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 023425 140 QSDQQAFYYIEKAVDQLH---PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-GHAGAAIAYGSLL 204 (282)
Q Consensus 140 ~d~~~A~~~~~kAa~~g~---~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-g~~~a~~~Lg~~y 204 (282)
++-..-.+--+-.++ ..|.-.||..-.. .+|+.+|..||.+.++. +.|....+-+.+.
T Consensus 149 ---~dV~srvepLa~d~n~mR~sArEALglAa~k----agd~a~A~~~F~qia~Da~aprnirqRAq~m 210 (221)
T COG4649 149 ---DDVSSRVEPLAGDGNPMRHSAREALGLAAYK----AGDFAKAKSWFVQIANDAQAPRNIRQRAQIM 210 (221)
T ss_pred ---HHHHHHhhhccCCCChhHHHHHHHHhHHHHh----ccchHHHHHHHHHHHccccCcHHHHHHHHHH
Confidence 444444444444444 3566678887777 79999999999997764 3455444444443
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=28.99 E-value=4.9e+02 Score=24.40 Aligned_cols=88 Identities=16% Similarity=0.018 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhchhc
Q 023425 156 LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESN 235 (282)
Q Consensus 156 g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg~~ 235 (282)
.+++..+.|+.- .++.+.|++..+ +..++.-+-.||..-+. .+|++.|.+.|.++-+..-..+=+.
T Consensus 319 ~D~~~rFeLAl~-------lg~L~~A~~~a~---~~~~~~~W~~Lg~~AL~----~g~~~lAe~c~~k~~d~~~L~lLy~ 384 (443)
T PF04053_consen 319 TDPDHRFELALQ-------LGNLDIALEIAK---ELDDPEKWKQLGDEALR----QGNIELAEECYQKAKDFSGLLLLYS 384 (443)
T ss_dssp S-HHHHHHHHHH-------CT-HHHHHHHCC---CCSTHHHHHHHHHHHHH----TTBHHHHHHHHHHCT-HHHHHHHHH
T ss_pred CChHHHhHHHHh-------cCCHHHHHHHHH---hcCcHHHHHHHHHHHHH----cCCHHHHHHHHHhhcCccccHHHHH
Confidence 567777777765 466777755432 34577788999999888 8899999999988866333332233
Q ss_pred cCCCHHHHHHHHHHHHHhccHH
Q 023425 236 LMNPVEKAKEQFEVAAQAGCNL 257 (282)
Q Consensus 236 ~~~~~~~A~~~~~~Aa~~g~~~ 257 (282)
..+|.+.=.+.-..|...|+..
T Consensus 385 ~~g~~~~L~kl~~~a~~~~~~n 406 (443)
T PF04053_consen 385 STGDREKLSKLAKIAEERGDIN 406 (443)
T ss_dssp HCT-HHHHHHHHHHHHHTT-HH
T ss_pred HhCCHHHHHHHHHHHHHccCHH
Confidence 4445444444555555555444
No 358
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=28.15 E-value=4.5e+02 Score=23.77 Aligned_cols=103 Identities=13% Similarity=-0.026 Sum_probs=56.4
Q ss_pred CCchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CC-----CHHHHHHHHHHHh
Q 023425 62 RRLIPLLKTAKENFELALEADNS-NTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MG-----DPDAQYELGCRLR 133 (282)
Q Consensus 62 ~~~~~~~~~A~~~~~~a~~~~~g-~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g-----~~~A~~~Lg~~y~ 133 (282)
.+..+-+..|.++.+-.+.++|. ||-+....=..|.-.. ++++==+..++.... .. -|.-.+.++..+.
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs---~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRS---RQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhc---CCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 34446689999999999999998 8877766555554221 233322333333222 11 1233344443333
Q ss_pred cCCC-----------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023425 134 VEND-----------YVQSDQQAFYYIEKAVDQLHPGALYLLGTVY 168 (282)
Q Consensus 134 ~g~~-----------~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y 168 (282)
.-++ ...+.+.|-..+++|+.. +|.....|-.-.
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~-fP~vl~~Ll~~l 234 (360)
T PF04910_consen 190 RLEKEESSQSSAQSGRSENSESADEALQKAILR-FPWVLVPLLDKL 234 (360)
T ss_pred HhcCccccccccccccccchhHHHHHHHHHHHH-hHHHHHHHHHHh
Confidence 2211 234457788888887775 565555555433
No 359
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=27.74 E-value=4e+02 Score=22.94 Aligned_cols=61 Identities=13% Similarity=-0.044 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCcc-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023425 146 FYYIEKAVDQLHPGALYLLGTVYLTGDCVKK-----DIASALWCFHRASEKGHAGAAIAYGSLLLR 206 (282)
Q Consensus 146 ~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~-----d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~ 206 (282)
.+.|+++.+.|+......+=.++....+... +...|++.++.|++.++-+-++.|..++..
T Consensus 183 ~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 183 RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKA 248 (258)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3678888888887777666666665555455 778899999999999999999988888764
No 360
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=26.04 E-value=2e+02 Score=23.05 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 142 DQQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 142 ~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.+..++|.++.+.. -++..+.+++.++.. .|+.++|..+.+++...
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~----~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALAL----LGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 45556666666654 567777777777777 77788887777776543
No 361
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=25.71 E-value=8.4e+02 Score=26.22 Aligned_cols=123 Identities=14% Similarity=0.015 Sum_probs=70.9
Q ss_pred hhhcccchHHHHHHHHHHhhhhh-------HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH-----cCCCCHHHHHHHH
Q 023425 26 KRWLHSRNKKAMELIAKGWSALK-------EVDRVIDYCELNDRRLIPLLKTAKENFELALE-----ADNSNTHARYWLS 93 (282)
Q Consensus 26 ~~~~~~~~~~A~e~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-----~~~g~~~a~~~Lg 93 (282)
.....+.+.+|.+ +...++-.. ...+..+.......+..++.++|+.+=++|+- ...+++.-...+|
T Consensus 941 ~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 941 EALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 3344566666777 444333222 33334555555666777888999998888764 2233444444444
Q ss_pred HHHhcCCCCCcCHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH
Q 023425 94 KLHLKYHVPGACKAMGAALLVDAANM-------GD---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 94 ~~~~~~~~~~~~~~~A~~~~~~Aa~~-------g~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~ 154 (282)
.+-...... .....|...+-++... .+ +..-.+++.++.. ..+.+.|+.+.+.|..
T Consensus 1020 nlal~~f~~-~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~----v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1020 NLALYEFAV-KNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLG----VEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHHhc-cCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhh----HHHHHHHHHHHHHHHH
Confidence 432211112 2557777777777542 12 2344667777665 4555899999998876
No 362
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.36 E-value=3.8e+02 Score=21.95 Aligned_cols=114 Identities=19% Similarity=0.102 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHcCC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-CH-----HHHHHHHHHHHcCCCCcc
Q 023425 143 QQAFYYIEKAVDQLH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG-HA-----GAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 143 ~~A~~~~~kAa~~g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-~~-----~a~~~Lg~~y~~g~g~~~ 212 (282)
++|+.-|....+.|+ .-|....+.+... ++|...|+.+|..+.... .| .|...-+.++.. ..
T Consensus 75 d~Alaaf~~lektg~g~YpvLA~mr~at~~a~----kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD----~g 146 (221)
T COG4649 75 DDALAAFTDLEKTGYGSYPVLARMRAATLLAQ----KGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD----NG 146 (221)
T ss_pred hHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh----cccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc----cc
Confidence 677777776666543 4577788888888 889999999998876542 22 244444555554 22
Q ss_pred cHHHHHHHHHHHHH-------HHchhch--hccCCCHHHHHHHHHHHHH-hccHHHHHHHHH
Q 023425 213 CLTKLNAKRVSAAK-------KARANLE--SNLMNPVEKAKEQFEVAAQ-AGCNLGLRWLQR 264 (282)
Q Consensus 213 ~~~~A~~~~~~a~~-------~a~~~lg--~~~~~~~~~A~~~~~~Aa~-~g~~~a~~~l~~ 264 (282)
.++.-..-.+.-.. .+.--|| ....+|+..|..||.+-++ .+.|.....-+.
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq 208 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQ 208 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHH
Confidence 22221111111110 1222344 3478899999999998776 233444443333
No 363
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.33 E-value=6.8e+02 Score=25.65 Aligned_cols=31 Identities=6% Similarity=-0.212 Sum_probs=22.2
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHHHH
Q 023425 50 VDRVIDYCELNDRRLIPLLKTAKENFELALE 80 (282)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 80 (282)
.-......+|.....++|+++|..+|-+++.
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 3344556666667777888888888888864
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=24.98 E-value=2.4e+02 Score=19.55 Aligned_cols=31 Identities=19% Similarity=0.043 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHL 97 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~ 97 (282)
..++|+..++++++..+..++.+--||.++.
T Consensus 21 ~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~q 51 (80)
T PF10579_consen 21 ETQQALQKWRKALEKITDREDRFRVLGYLIQ 51 (80)
T ss_pred hHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 3788999999999888888887777887754
No 365
>PRK14700 recombination factor protein RarA; Provisional
Probab=24.59 E-value=4.9e+02 Score=22.99 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhccH
Q 023425 178 IASALWCFHRASEKGHAGA-AIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 178 ~~~A~~~~~~A~~~g~~~a-~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g~~ 256 (282)
+-.-+.-|.|++.-.|++| .|.|+.|...|. |+ ....++-+..+.-++|.-.+.-...|...++-+-..|.|
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GE----Dp---~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGV----DP---LVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCC----CH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 3344555666666555553 566666666541 22 112233333344444444444445555555555556666
Q ss_pred HHHHHHHHH
Q 023425 257 LGLRWLQRI 265 (282)
Q Consensus 257 ~a~~~l~~l 265 (282)
++..-|+..
T Consensus 199 Ea~i~La~a 207 (300)
T PRK14700 199 EGRLVLAQA 207 (300)
T ss_pred HHHHHHHHH
Confidence 655555544
No 366
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.09 E-value=4.9e+02 Score=27.75 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH-------hcCCCCccCHHHHHHHHHHHHH
Q 023425 120 GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-LHPGALYLLGTVY-------LTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 120 g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y-------~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
..+---+.+|..|...+.. .+|+.+|.+|... |..++...+-.-. .+|.. .--...|++||.+++.
T Consensus 918 lk~v~rfmlg~~yl~tge~----~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t-~s~e~t~lhYYlkv~r 991 (1480)
T KOG4521|consen 918 LKPVIRFMLGIAYLGTGEP----VKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKT-PSEELTALHYYLKVVR 991 (1480)
T ss_pred hHHHHHHhhheeeecCCch----HHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCC-CCchHHHHHHHHHHHH
Confidence 3445556667666664444 7788888777765 6666666654431 12221 1222236777777654
No 367
>PRK10941 hypothetical protein; Provisional
Probab=23.00 E-value=4.1e+02 Score=23.01 Aligned_cols=60 Identities=13% Similarity=0.011 Sum_probs=44.3
Q ss_pred CCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHH
Q 023425 62 RRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQ 125 (282)
Q Consensus 62 ~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~ 125 (282)
+...++++.|+..-+..+...|++|.-.-.-|.+|.+. ..+..|..=++.-++ +.+|.+.
T Consensus 191 ~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL----~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 191 LMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL----DCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhCCCchhHH
Confidence 33457799999999999999999998888899999877 344777666666553 2444443
No 368
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.90 E-value=6.8e+02 Score=24.01 Aligned_cols=78 Identities=13% Similarity=-0.020 Sum_probs=42.3
Q ss_pred cchhhhhhcccchHHHHHHHHHHhhhhh---------HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCC-CC--HHH
Q 023425 21 SNQHQKRWLHSRNKKAMELIAKGWSALK---------EVDRVIDYCELNDRRLIPLLKTAKENFELALEADN-SN--THA 88 (282)
Q Consensus 21 ~~~~~~~~~~~~~~~A~e~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-g~--~~a 88 (282)
.+.-..+.+.+++.+|++-+....+... .......+..|......+-++.|+.+|..|..... -+ +-.
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444555667788888776554433222 22334445555555555667778878777765311 11 123
Q ss_pred HHHHHHHHhc
Q 023425 89 RYWLSKLHLK 98 (282)
Q Consensus 89 ~~~Lg~~~~~ 98 (282)
..+|+..|.+
T Consensus 407 nlnlAi~YL~ 416 (629)
T KOG2300|consen 407 NLNLAISYLR 416 (629)
T ss_pred HHhHHHHHHH
Confidence 3456666665
No 369
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=22.89 E-value=1.8e+02 Score=25.71 Aligned_cols=39 Identities=21% Similarity=0.120 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhccHHHHHHH
Q 023425 218 NAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNLGLRWL 262 (282)
Q Consensus 218 ~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g~~~a~~~l 262 (282)
..||..+++.+ ...+|+++|+.+.++|.++|...|..-+
T Consensus 257 e~Yy~~aI~~A------Vk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 257 ESYFNQAIKQA------VKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHH------HHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 44555554443 3668899999999999999988887654
No 370
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=22.53 E-value=3.3e+02 Score=20.20 Aligned_cols=23 Identities=13% Similarity=-0.021 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHA 88 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a 88 (282)
+|.-+|++..+..+...+++..+
T Consensus 10 GnhiKAL~iied~i~~h~~~~~~ 32 (111)
T PF04781_consen 10 GNHIKALEIIEDLISRHGEDESS 32 (111)
T ss_pred cCHHHHHHHHHHHHHHccCCCch
Confidence 45888999999888766555543
No 371
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=20.66 E-value=7.4e+02 Score=23.55 Aligned_cols=123 Identities=9% Similarity=-0.060 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHH
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAF 146 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~ 146 (282)
.-++|++.++.++...+.|.+.....=. --...|++|.......=...|.....+-+-.+-+..++.
T Consensus 395 ~dekalnLLk~il~ft~yD~ec~n~v~~-------------fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~e 461 (549)
T PF07079_consen 395 CDEKALNLLKLILQFTNYDIECENIVFL-------------FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEE 461 (549)
T ss_pred ccHHHHHHHHHHHHhccccHHHHHHHHH-------------HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHH
Confidence 3566666666666655554433322111 112456677766666666667766554333232322221
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 023425 147 -YYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWC---FHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRV 222 (282)
Q Consensus 147 -~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~---~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 222 (282)
.-+. .+| ..++. .|++.++.-+ +.+.+ . .+.++.-+|.|.+. .+++++|+.++.
T Consensus 462 ian~L-------aDA-----EyLys----qgey~kc~~ys~WL~~ia-P-S~~~~RLlGl~l~e----~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 462 IANFL-------ADA-----EYLYS----QGEYHKCYLYSSWLTKIA-P-SPQAYRLLGLCLME----NKRYQEAWEYLQ 519 (549)
T ss_pred HHHHH-------HHH-----HHHHh----cccHHHHHHHHHHHHHhC-C-cHHHHHHHHHHHHH----HhhHHHHHHHHH
Confidence 1111 111 11222 4667776543 33322 2 88899999999988 888888888876
Q ss_pred HH
Q 023425 223 SA 224 (282)
Q Consensus 223 ~a 224 (282)
.-
T Consensus 520 ~L 521 (549)
T PF07079_consen 520 KL 521 (549)
T ss_pred hC
Confidence 54
No 372
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.57 E-value=2.9e+02 Score=27.90 Aligned_cols=69 Identities=17% Similarity=0.104 Sum_probs=45.3
Q ss_pred CCCcCHHHHHHHHHHHHhC-C--CHHHHHHHHHHHhcC---CCC--cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHh
Q 023425 101 VPGACKAMGAALLVDAANM-G--DPDAQYELGCRLRVE---NDY--VQSDQQAFYYIEKAVDQL-HPGALYLLGTVYL 169 (282)
Q Consensus 101 ~~~~~~~~A~~~~~~Aa~~-g--~~~A~~~Lg~~y~~g---~~~--~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y~ 169 (282)
..+.|-++|+......++. | .|+-++..|.+|.+. .++ ....+.|++||++|.+.. ...+=.|++.++.
T Consensus 254 Nr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~ 331 (1226)
T KOG4279|consen 254 NRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLR 331 (1226)
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHH
Confidence 4557889999998888864 3 467777788888542 111 234578999999998862 2333344444433
Done!