Query 023425
Match_columns 282
No_of_seqs 197 out of 2481
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 06:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjv_A Putative SEL1 repeat pr 100.0 1.3E-33 4.5E-38 234.9 21.5 192 69-267 3-211 (212)
2 3e4b_A ALGK; tetratricopeptide 100.0 4.2E-32 1.4E-36 250.5 25.2 233 32-268 160-402 (452)
3 2xm6_A Protein corresponding t 100.0 3.3E-31 1.1E-35 246.2 30.2 238 30-269 56-304 (490)
4 2xm6_A Protein corresponding t 100.0 1.5E-30 5.3E-35 241.6 30.4 237 30-268 92-340 (490)
5 3rjv_A Putative SEL1 repeat pr 100.0 7.7E-31 2.6E-35 218.1 19.8 190 34-229 3-199 (212)
6 1ouv_A Conserved hypothetical 100.0 1.2E-29 4E-34 217.4 25.7 235 30-266 19-264 (273)
7 3e4b_A ALGK; tetratricopeptide 100.0 2.2E-29 7.6E-34 232.3 20.4 216 32-252 194-420 (452)
8 1ouv_A Conserved hypothetical 100.0 8E-28 2.8E-32 206.0 27.0 201 66-268 20-230 (273)
9 1klx_A Cysteine rich protein B 99.9 3.1E-27 1.1E-31 183.5 14.1 135 60-202 3-137 (138)
10 1klx_A Cysteine rich protein B 99.9 1.1E-26 3.8E-31 180.4 15.8 131 97-233 2-136 (138)
11 1w3b_A UDP-N-acetylglucosamine 99.8 7.5E-18 2.6E-22 150.6 24.7 221 31-268 149-385 (388)
12 2pl2_A Hypothetical conserved 99.8 1.1E-18 3.9E-23 144.8 17.9 175 65-251 18-212 (217)
13 3hym_B Cell division cycle pro 99.8 1.1E-17 3.8E-22 144.9 22.0 220 30-266 69-314 (330)
14 1w3b_A UDP-N-acetylglucosamine 99.8 2.6E-17 8.7E-22 147.1 24.9 222 30-268 114-351 (388)
15 3vtx_A MAMA; tetratricopeptide 99.8 1.9E-17 6.3E-22 132.8 19.7 157 53-225 6-168 (184)
16 4eqf_A PEX5-related protein; a 99.8 1.2E-17 4E-22 148.0 17.9 209 29-254 77-311 (365)
17 3hym_B Cell division cycle pro 99.8 9.2E-17 3.2E-21 139.1 22.0 225 30-270 35-284 (330)
18 2pl2_A Hypothetical conserved 99.8 1.1E-17 3.6E-22 138.9 15.1 184 29-225 17-212 (217)
19 3ieg_A DNAJ homolog subfamily 99.7 2E-15 6.9E-20 131.8 27.0 225 30-271 84-355 (359)
20 1fch_A Peroxisomal targeting s 99.7 1.6E-16 5.3E-21 140.3 20.0 195 65-271 77-345 (368)
21 2h6f_A Protein farnesyltransfe 99.7 1E-16 3.5E-21 144.6 16.2 222 30-266 110-361 (382)
22 3u4t_A TPR repeat-containing p 99.7 1.3E-16 4.4E-21 135.1 15.8 224 28-267 14-266 (272)
23 3vtx_A MAMA; tetratricopeptide 99.7 5.6E-16 1.9E-20 124.1 18.6 164 84-263 3-180 (184)
24 2h6f_A Protein farnesyltransfe 99.7 3.8E-16 1.3E-20 140.8 18.4 194 64-269 109-322 (382)
25 2y4t_A DNAJ homolog subfamily 99.7 1.3E-14 4.4E-19 131.5 28.6 224 30-269 107-376 (450)
26 3ieg_A DNAJ homolog subfamily 99.7 9.1E-15 3.1E-19 127.6 26.5 223 30-269 50-319 (359)
27 4gyw_A UDP-N-acetylglucosamine 99.7 2.3E-16 8E-21 152.9 17.7 153 58-226 15-173 (723)
28 3uq3_A Heat shock protein STI1 99.7 3.5E-15 1.2E-19 124.6 22.5 200 30-254 18-237 (258)
29 3cv0_A Peroxisome targeting si 99.7 1.7E-15 5.9E-20 130.9 21.2 224 29-269 33-299 (327)
30 4eqf_A PEX5-related protein; a 99.7 6.8E-16 2.3E-20 136.6 18.7 196 59-270 72-295 (365)
31 2q7f_A YRRB protein; TPR, prot 99.7 9.4E-16 3.2E-20 127.2 18.0 195 57-267 28-238 (243)
32 2xpi_A Anaphase-promoting comp 99.7 4.3E-15 1.5E-19 139.6 24.5 173 66-254 387-580 (597)
33 1fch_A Peroxisomal targeting s 99.7 2.1E-15 7.1E-20 133.0 20.5 207 29-252 76-358 (368)
34 4abn_A Tetratricopeptide repea 99.7 4.3E-16 1.5E-20 144.2 16.4 204 33-249 84-317 (474)
35 2y4t_A DNAJ homolog subfamily 99.7 1.5E-14 5.1E-19 131.1 25.3 222 30-268 39-341 (450)
36 3fp2_A TPR repeat-containing p 99.7 8.6E-15 2.9E-19 135.5 23.7 209 29-255 255-493 (537)
37 4gyw_A UDP-N-acetylglucosamine 99.7 7.7E-16 2.6E-20 149.3 16.9 159 81-255 4-176 (723)
38 4i17_A Hypothetical protein; T 99.7 6.4E-15 2.2E-19 122.1 19.8 182 65-267 20-225 (228)
39 4abn_A Tetratricopeptide repea 99.7 2.1E-14 7.1E-19 132.9 25.3 198 65-270 81-306 (474)
40 2xpi_A Anaphase-promoting comp 99.7 2E-14 6.7E-19 135.1 25.3 223 30-269 318-563 (597)
41 4g1t_A Interferon-induced prot 99.7 2.6E-15 9E-20 137.2 17.5 215 31-254 152-402 (472)
42 2ho1_A Type 4 fimbrial biogene 99.7 1.1E-14 3.9E-19 121.7 19.4 175 66-256 51-241 (252)
43 3u4t_A TPR repeat-containing p 99.7 4.1E-15 1.4E-19 125.8 16.5 181 29-226 49-249 (272)
44 3fp2_A TPR repeat-containing p 99.7 1.8E-14 6.1E-19 133.4 22.2 224 30-270 215-476 (537)
45 4a1s_A PINS, partner of inscut 99.6 8.8E-15 3E-19 131.2 19.3 49 65-117 99-153 (411)
46 1xnf_A Lipoprotein NLPI; TPR, 99.6 2E-14 6.7E-19 121.4 20.3 209 30-255 18-246 (275)
47 2gw1_A Mitochondrial precursor 99.6 1.9E-14 6.6E-19 132.1 21.9 223 30-269 202-462 (514)
48 2q7f_A YRRB protein; TPR, prot 99.6 8.4E-15 2.9E-19 121.4 16.1 181 29-226 35-221 (243)
49 4a1s_A PINS, partner of inscut 99.6 9.3E-15 3.2E-19 131.0 17.5 217 30-262 99-381 (411)
50 2gw1_A Mitochondrial precursor 99.6 2.2E-14 7.5E-19 131.7 20.3 83 30-118 19-101 (514)
51 2ho1_A Type 4 fimbrial biogene 99.6 2.5E-14 8.5E-19 119.7 18.7 181 29-226 49-237 (252)
52 3ulq_A Response regulator aspa 99.6 1.5E-14 5E-19 129.4 18.3 213 29-254 115-369 (383)
53 2vq2_A PILW, putative fimbrial 99.6 1.7E-13 5.9E-18 111.8 23.1 175 65-254 21-212 (225)
54 4g1t_A Interferon-induced prot 99.6 1.9E-14 6.6E-19 131.4 19.1 220 30-254 107-364 (472)
55 1qqe_A Vesicular transport pro 99.6 2.9E-14 9.8E-19 123.4 18.7 233 6-269 2-284 (292)
56 3uq3_A Heat shock protein STI1 99.6 1.3E-13 4.5E-18 114.9 19.8 183 65-270 18-221 (258)
57 3sf4_A G-protein-signaling mod 99.6 7.4E-14 2.5E-18 124.2 19.1 227 30-272 60-363 (406)
58 2vq2_A PILW, putative fimbrial 99.6 2E-13 6.8E-18 111.4 20.0 182 29-226 20-210 (225)
59 3cv0_A Peroxisome targeting si 99.6 1.2E-13 4.2E-18 119.1 19.8 188 66-269 35-253 (327)
60 3urz_A Uncharacterized protein 99.6 3.2E-14 1.1E-18 117.0 15.1 164 66-269 18-203 (208)
61 3ulq_A Response regulator aspa 99.6 2E-13 7E-18 121.9 20.9 196 58-269 109-352 (383)
62 3sf4_A G-protein-signaling mod 99.6 4.7E-14 1.6E-18 125.5 16.1 230 28-269 20-320 (406)
63 3ro2_A PINS homolog, G-protein 99.6 1.6E-13 5.6E-18 118.1 18.9 230 29-270 17-317 (338)
64 4i17_A Hypothetical protein; T 99.6 7.3E-14 2.5E-18 115.6 15.5 135 28-170 18-165 (228)
65 3q15_A PSP28, response regulat 99.6 1.1E-13 3.9E-18 123.5 17.7 213 29-254 113-366 (378)
66 3mkr_A Coatomer subunit epsilo 99.6 4.1E-13 1.4E-17 116.3 20.5 205 30-257 47-268 (291)
67 4ga2_A E3 SUMO-protein ligase 99.6 2.4E-14 8.2E-19 111.8 11.4 136 59-206 4-146 (150)
68 3ro2_A PINS homolog, G-protein 99.5 2.9E-13 1E-17 116.4 18.0 211 29-255 55-334 (338)
69 1xnf_A Lipoprotein NLPI; TPR, 99.5 7.4E-13 2.5E-17 111.6 19.7 192 61-269 14-228 (275)
70 3as5_A MAMA; tetratricopeptide 99.5 4.2E-13 1.4E-17 105.8 16.6 146 65-226 21-172 (186)
71 3nf1_A KLC 1, kinesin light ch 99.5 1.8E-13 6.2E-18 117.2 15.5 213 30-254 40-308 (311)
72 3edt_B KLC 2, kinesin light ch 99.5 1.1E-13 3.6E-18 116.7 13.5 213 29-253 13-281 (283)
73 3mkr_A Coatomer subunit epsilo 99.5 4.7E-13 1.6E-17 116.0 17.9 224 29-270 11-248 (291)
74 3edt_B KLC 2, kinesin light ch 99.5 2.4E-13 8.4E-18 114.5 14.7 185 30-226 56-280 (283)
75 3qky_A Outer membrane assembly 99.5 2.5E-13 8.4E-18 114.9 14.7 180 65-272 28-248 (261)
76 3nf1_A KLC 1, kinesin light ch 99.5 4E-13 1.4E-17 115.1 15.8 145 66-226 41-223 (311)
77 3urz_A Uncharacterized protein 99.5 6.2E-13 2.1E-17 109.2 15.1 163 30-203 17-199 (208)
78 3qky_A Outer membrane assembly 99.5 2.1E-12 7.2E-17 109.2 18.3 135 80-226 9-176 (261)
79 3q15_A PSP28, response regulat 99.5 1.8E-12 6E-17 115.8 18.7 199 55-269 104-349 (378)
80 2pzi_A Probable serine/threoni 99.5 7.2E-14 2.5E-18 134.9 10.2 180 29-222 403-600 (681)
81 4gco_A Protein STI-1; structur 99.5 4.3E-13 1.5E-17 101.6 12.4 115 78-204 5-125 (126)
82 2pzi_A Probable serine/threoni 99.5 2E-13 6.7E-18 131.8 13.0 156 63-235 402-577 (681)
83 4ga2_A E3 SUMO-protein ligase 99.5 5.1E-13 1.7E-17 104.2 11.6 132 30-170 10-146 (150)
84 2ond_A Cleavage stimulation fa 99.5 8.9E-12 3.1E-16 108.3 20.2 207 34-256 33-273 (308)
85 2vsy_A XCC0866; transferase, g 99.5 1.6E-12 5.4E-17 122.5 16.5 145 66-226 3-156 (568)
86 1qqe_A Vesicular transport pro 99.4 2.8E-12 9.5E-17 110.8 16.4 189 35-256 3-231 (292)
87 3gyz_A Chaperone protein IPGC; 99.4 2.7E-13 9.3E-18 106.3 8.0 114 69-194 19-136 (151)
88 3as5_A MAMA; tetratricopeptide 99.4 6.1E-12 2.1E-16 99.1 15.6 150 29-191 20-173 (186)
89 4gco_A Protein STI-1; structur 99.4 2.7E-12 9.3E-17 97.1 12.7 96 65-168 26-125 (126)
90 2ond_A Cleavage stimulation fa 99.4 6.3E-12 2.2E-16 109.2 16.4 179 33-226 80-269 (308)
91 2ifu_A Gamma-SNAP; membrane fu 99.4 1.6E-11 5.4E-16 106.8 18.3 187 4-225 6-222 (307)
92 2ifu_A Gamma-SNAP; membrane fu 99.4 7.7E-12 2.6E-16 108.8 15.9 183 30-254 4-224 (307)
93 2r5s_A Uncharacterized protein 99.4 1.4E-12 4.7E-17 104.0 9.7 146 66-227 20-173 (176)
94 2vsy_A XCC0866; transferase, g 99.4 7.1E-12 2.4E-16 118.0 15.9 159 30-201 2-169 (568)
95 3qou_A Protein YBBN; thioredox 99.4 5.7E-12 1.9E-16 108.7 13.0 156 56-227 121-284 (287)
96 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.3E-11 8E-16 100.8 14.8 149 65-225 17-211 (225)
97 2vgx_A Chaperone SYCD; alterna 99.3 5.3E-12 1.8E-16 98.2 8.9 110 70-191 5-118 (148)
98 2qfc_A PLCR protein; TPR, HTH, 99.3 1.1E-10 3.9E-15 100.4 17.5 145 65-225 88-264 (293)
99 3u3w_A Transcriptional activat 99.3 2.8E-10 9.5E-15 98.0 18.4 146 65-226 88-265 (293)
100 1p5q_A FKBP52, FK506-binding p 99.3 6.1E-12 2.1E-16 111.2 8.0 145 65-225 126-292 (336)
101 1hh8_A P67PHOX, NCF-2, neutrop 99.3 1.1E-10 3.8E-15 94.9 14.6 124 86-226 6-149 (213)
102 2fo7_A Synthetic consensus TPR 99.3 2.7E-10 9.2E-15 84.5 14.9 114 66-191 15-132 (136)
103 2e2e_A Formate-dependent nitri 99.3 8.4E-11 2.9E-15 93.2 12.7 120 62-193 20-146 (177)
104 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.1E-10 1.1E-14 94.0 16.3 158 85-254 3-214 (225)
105 2xcb_A PCRH, regulatory protei 99.2 3.5E-11 1.2E-15 92.4 9.3 107 73-191 5-115 (142)
106 3gyz_A Chaperone protein IPGC; 99.2 3.1E-10 1.1E-14 88.7 14.7 93 56-156 40-134 (151)
107 2fo7_A Synthetic consensus TPR 99.2 1.4E-09 4.7E-14 80.5 16.7 124 87-226 2-131 (136)
108 1p5q_A FKBP52, FK506-binding p 99.2 5.1E-11 1.7E-15 105.2 9.8 146 31-189 127-292 (336)
109 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2.9E-10 9.9E-15 92.4 13.7 114 65-193 19-152 (213)
110 3gw4_A Uncharacterized protein 99.2 5.2E-10 1.8E-14 89.8 14.7 146 65-226 5-175 (203)
111 2qfc_A PLCR protein; TPR, HTH, 99.2 3.5E-10 1.2E-14 97.3 14.3 150 29-190 87-265 (293)
112 1a17_A Serine/threonine protei 99.2 7.3E-10 2.5E-14 85.9 14.4 112 66-189 27-144 (166)
113 3qou_A Protein YBBN; thioredox 99.2 4.3E-10 1.5E-14 96.9 14.1 166 68-252 102-283 (287)
114 3u3w_A Transcriptional activat 99.2 5E-10 1.7E-14 96.4 13.8 150 29-190 87-265 (293)
115 3upv_A Heat shock protein STI1 99.2 6.9E-10 2.4E-14 82.8 12.8 108 85-204 3-122 (126)
116 2r5s_A Uncharacterized protein 99.1 1E-10 3.6E-15 93.0 8.6 149 29-190 18-172 (176)
117 4f3v_A ESX-1 secretion system 99.1 9.8E-11 3.3E-15 100.5 8.7 175 65-256 19-240 (282)
118 1hz4_A MALT regulatory protein 99.1 2E-09 6.7E-14 95.3 17.5 208 30-253 27-282 (373)
119 1hz4_A MALT regulatory protein 99.1 7.6E-09 2.6E-13 91.4 21.3 211 29-255 65-324 (373)
120 1a17_A Serine/threonine protei 99.1 3.4E-09 1.2E-13 82.1 16.7 126 85-226 12-145 (166)
121 2ooe_A Cleavage stimulation fa 99.1 5.1E-09 1.7E-13 97.5 20.4 172 69-254 255-455 (530)
122 4gcn_A Protein STI-1; structur 99.1 4.9E-10 1.7E-14 84.5 11.0 77 122-206 8-95 (127)
123 2lni_A Stress-induced-phosphop 99.1 1.4E-09 4.8E-14 80.9 13.4 113 82-206 12-130 (133)
124 4gcn_A Protein STI-1; structur 99.1 5.8E-10 2E-14 84.1 11.1 49 66-118 22-70 (127)
125 3sz7_A HSC70 cochaperone (SGT) 99.1 1.1E-09 3.9E-14 85.7 12.5 111 82-204 7-123 (164)
126 1xi4_A Clathrin heavy chain; a 99.1 2E-08 6.7E-13 101.5 23.6 188 30-258 1062-1252(1630)
127 2ooe_A Cleavage stimulation fa 99.1 8.9E-09 3E-13 95.9 20.0 206 34-256 255-495 (530)
128 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 1E-10 3.6E-15 107.6 6.5 138 65-218 247-405 (457)
129 3upv_A Heat shock protein STI1 99.1 1.4E-09 4.8E-14 81.1 11.5 95 66-168 18-122 (126)
130 2vgx_A Chaperone SYCD; alterna 99.1 1.3E-09 4.5E-14 84.5 11.6 84 64-155 33-118 (148)
131 3sz7_A HSC70 cochaperone (SGT) 99.1 1.5E-09 5.2E-14 85.0 11.3 95 66-168 25-123 (164)
132 2xcb_A PCRH, regulatory protei 99.0 1.4E-09 4.7E-14 83.3 10.7 83 65-155 31-115 (142)
133 1na0_A Designed protein CTPR3; 99.0 1.3E-08 4.3E-13 74.4 15.3 113 82-206 4-123 (125)
134 2vyi_A SGTA protein; chaperone 99.0 4.9E-09 1.7E-13 77.3 13.0 113 82-206 8-126 (131)
135 2fbn_A 70 kDa peptidylprolyl i 99.0 5.1E-10 1.7E-14 90.5 8.0 97 66-170 52-168 (198)
136 2vyi_A SGTA protein; chaperone 99.0 4.2E-09 1.4E-13 77.7 12.1 98 65-170 25-126 (131)
137 2fbn_A 70 kDa peptidylprolyl i 99.0 8E-10 2.8E-14 89.3 8.6 133 62-206 14-168 (198)
138 3gw4_A Uncharacterized protein 99.0 3.3E-09 1.1E-13 85.1 12.1 146 30-191 5-176 (203)
139 2lni_A Stress-induced-phosphop 99.0 3.2E-09 1.1E-13 79.0 11.0 98 65-170 29-130 (133)
140 3q49_B STIP1 homology and U bo 99.0 9.8E-09 3.3E-13 77.2 13.5 99 81-191 4-106 (137)
141 1elw_A TPR1-domain of HOP; HOP 99.0 2.4E-08 8.2E-13 72.2 14.8 107 86-204 4-116 (118)
142 2dba_A Smooth muscle cell asso 99.0 3.2E-08 1.1E-12 74.9 16.1 114 81-206 23-145 (148)
143 2kck_A TPR repeat; tetratricop 99.0 4.7E-09 1.6E-13 75.4 10.7 99 82-192 2-107 (112)
144 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 7.6E-10 2.6E-14 101.8 7.9 139 32-183 249-406 (457)
145 2e2e_A Formate-dependent nitri 99.0 4.7E-09 1.6E-13 82.9 11.0 111 104-226 24-143 (177)
146 3ro3_A PINS homolog, G-protein 99.0 2.2E-08 7.5E-13 76.4 14.3 125 86-226 9-157 (164)
147 3dra_A Protein farnesyltransfe 98.9 1.3E-07 4.4E-12 82.3 19.9 223 31-264 47-299 (306)
148 1elw_A TPR1-domain of HOP; HOP 98.9 1.7E-08 5.6E-13 73.1 12.1 96 65-168 17-116 (118)
149 1hxi_A PEX5, peroxisome target 98.9 3.6E-09 1.2E-13 79.1 8.4 82 66-155 31-114 (121)
150 1zu2_A Mitochondrial import re 98.9 3.4E-09 1.2E-13 82.9 8.5 90 66-155 16-120 (158)
151 4f3v_A ESX-1 secretion system 98.9 6.5E-10 2.2E-14 95.4 4.8 180 30-226 19-236 (282)
152 1elr_A TPR2A-domain of HOP; HO 98.9 2.7E-08 9.1E-13 73.4 13.0 109 85-205 3-123 (131)
153 1na0_A Designed protein CTPR3; 98.9 3E-08 1E-12 72.3 13.1 98 65-170 22-123 (125)
154 3q49_B STIP1 homology and U bo 98.9 3.2E-08 1.1E-12 74.2 13.3 96 119-226 6-105 (137)
155 1xi4_A Clathrin heavy chain; a 98.9 2.3E-07 7.9E-12 93.9 22.8 188 30-254 1089-1310(1630)
156 4b4t_Q 26S proteasome regulato 98.9 5.6E-08 1.9E-12 87.3 17.0 171 67-253 19-245 (434)
157 2c2l_A CHIP, carboxy terminus 98.9 6.6E-09 2.2E-13 89.2 10.3 83 65-155 17-101 (281)
158 1hxi_A PEX5, peroxisome target 98.9 1.3E-08 4.5E-13 75.9 10.6 93 88-192 19-115 (121)
159 1wao_1 Serine/threonine protei 98.9 4.8E-09 1.6E-13 97.0 9.8 117 58-186 12-134 (477)
160 2c2l_A CHIP, carboxy terminus 98.9 5.6E-09 1.9E-13 89.6 9.3 98 83-192 1-102 (281)
161 3dss_A Geranylgeranyl transfer 98.9 1.6E-06 5.5E-11 76.1 24.2 228 31-263 44-314 (331)
162 1elr_A TPR2A-domain of HOP; HO 98.9 1E-07 3.5E-12 70.2 14.2 112 122-271 4-127 (131)
163 3dra_A Protein farnesyltransfe 98.8 3.6E-07 1.2E-11 79.5 19.7 194 68-268 49-270 (306)
164 3k9i_A BH0479 protein; putativ 98.8 6.1E-09 2.1E-13 76.9 7.1 88 65-160 3-97 (117)
165 3ro3_A PINS homolog, G-protein 98.8 3.3E-08 1.1E-12 75.4 11.2 115 65-191 22-158 (164)
166 3rkv_A Putative peptidylprolyl 98.8 7.5E-08 2.6E-12 75.0 13.4 108 86-205 11-143 (162)
167 2kck_A TPR repeat; tetratricop 98.8 2E-08 7E-13 72.0 9.3 96 119-226 3-105 (112)
168 2dba_A Smooth muscle cell asso 98.8 6.6E-08 2.2E-12 73.1 12.5 97 66-170 42-145 (148)
169 2xev_A YBGF; tetratricopeptide 98.8 1E-07 3.5E-12 70.7 12.9 93 87-191 3-105 (129)
170 3rkv_A Putative peptidylprolyl 98.8 2.3E-08 7.7E-13 78.0 9.5 96 66-169 25-143 (162)
171 2hr2_A Hypothetical protein; a 98.8 8.8E-08 3E-12 75.0 11.9 92 123-226 12-130 (159)
172 2xev_A YBGF; tetratricopeptide 98.8 8.5E-08 2.9E-12 71.1 11.5 93 66-166 16-118 (129)
173 1wao_1 Serine/threonine protei 98.8 2.3E-09 7.9E-14 99.1 3.2 121 86-222 6-134 (477)
174 1ihg_A Cyclophilin 40; ppiase 98.8 1.1E-07 3.8E-12 84.9 14.0 109 86-206 223-353 (370)
175 2hr2_A Hypothetical protein; a 98.8 3.7E-08 1.3E-12 77.1 9.4 94 66-191 25-131 (159)
176 2if4_A ATFKBP42; FKBP-like, al 98.7 2E-08 6.7E-13 88.6 8.1 139 57-225 184-326 (338)
177 2kat_A Uncharacterized protein 98.7 2.1E-07 7.2E-12 68.0 12.4 90 70-167 3-98 (115)
178 1ihg_A Cyclophilin 40; ppiase 98.7 5.1E-08 1.7E-12 87.2 10.5 106 65-182 236-361 (370)
179 2if4_A ATFKBP42; FKBP-like, al 98.7 1.2E-07 4.1E-12 83.5 11.0 142 85-255 178-330 (338)
180 4b4t_Q 26S proteasome regulato 98.7 4.7E-07 1.6E-11 81.2 14.8 181 30-226 17-244 (434)
181 1b89_A Protein (clathrin heavy 98.6 5.7E-08 1.9E-12 88.1 8.3 156 19-206 34-189 (449)
182 1dce_A Protein (RAB geranylger 98.6 9.7E-07 3.3E-11 83.3 16.2 173 30-208 42-240 (567)
183 1zu2_A Mitochondrial import re 98.6 6.7E-08 2.3E-12 75.5 6.8 88 106-193 18-122 (158)
184 1b89_A Protein (clathrin heavy 98.6 1.2E-08 4.1E-13 92.6 2.7 153 68-250 19-174 (449)
185 3k9i_A BH0479 protein; putativ 98.6 1.8E-07 6.2E-12 68.8 8.1 96 30-129 3-102 (117)
186 1dce_A Protein (RAB geranylger 98.6 2.3E-06 7.7E-11 80.7 17.6 133 68-206 45-190 (567)
187 1na3_A Designed protein CTPR2; 98.5 6.7E-07 2.3E-11 61.8 9.6 76 122-205 9-88 (91)
188 2kat_A Uncharacterized protein 98.5 1.7E-06 5.9E-11 63.0 12.3 89 108-204 3-99 (115)
189 3ma5_A Tetratricopeptide repea 98.5 1.3E-06 4.4E-11 62.5 10.5 79 82-168 3-87 (100)
190 3ma5_A Tetratricopeptide repea 98.5 1.2E-06 4E-11 62.7 10.3 81 118-206 3-89 (100)
191 3dss_A Geranylgeranyl transfer 98.5 2.5E-05 8.7E-10 68.4 20.5 191 68-264 46-278 (331)
192 1na3_A Designed protein CTPR2; 98.5 1.3E-06 4.5E-11 60.3 9.8 78 84-169 7-88 (91)
193 2l6j_A TPR repeat-containing p 98.5 1.5E-07 5.1E-12 67.7 4.6 61 87-155 5-67 (111)
194 2l6j_A TPR repeat-containing p 98.4 3E-06 1E-10 60.7 10.4 78 121-206 3-90 (111)
195 3ly7_A Transcriptional activat 98.4 9E-06 3.1E-10 72.0 14.4 139 34-193 194-341 (372)
196 3q7a_A Farnesyltransferase alp 98.3 0.00014 4.7E-09 64.1 21.4 171 68-271 70-257 (349)
197 3q7a_A Farnesyltransferase alp 98.3 3.1E-05 1.1E-09 68.3 15.5 174 31-207 68-255 (349)
198 3mv2_B Coatomer subunit epsilo 98.1 9.5E-05 3.3E-09 64.0 14.3 178 71-269 85-299 (310)
199 2v5f_A Prolyl 4-hydroxylase su 98.1 4.1E-05 1.4E-09 55.1 10.2 72 122-201 5-87 (104)
200 3u64_A Protein TP_0956; tetrat 98.0 0.00014 4.8E-09 62.1 14.1 110 80-192 146-270 (301)
201 3mv2_B Coatomer subunit epsilo 98.0 0.00021 7.3E-09 61.8 14.6 130 109-250 85-237 (310)
202 1pc2_A Mitochondria fission pr 97.9 0.00015 5E-09 56.0 11.6 95 65-164 11-111 (152)
203 3n71_A Histone lysine methyltr 97.9 6.3E-05 2.2E-09 69.5 10.7 112 66-189 323-462 (490)
204 2v5f_A Prolyl 4-hydroxylase su 97.8 0.00015 5.2E-09 52.1 9.9 73 85-165 4-87 (104)
205 2kc7_A BFR218_protein; tetratr 97.8 4E-05 1.4E-09 53.8 6.6 58 66-127 14-74 (99)
206 3u64_A Protein TP_0956; tetrat 97.8 0.0003 1E-08 60.0 11.9 93 60-155 171-269 (301)
207 3n71_A Histone lysine methyltr 97.7 0.0004 1.4E-08 64.1 13.3 110 104-225 323-462 (490)
208 2kc7_A BFR218_protein; tetratr 97.7 0.00027 9.2E-09 49.4 8.9 64 126-197 4-72 (99)
209 4e6h_A MRNA 3'-END-processing 97.7 0.003 1E-07 60.6 18.9 173 68-255 325-535 (679)
210 3bee_A Putative YFRE protein; 97.7 0.00021 7.3E-09 50.4 8.1 69 82-155 2-72 (93)
211 3bee_A Putative YFRE protein; 97.7 0.00035 1.2E-08 49.3 9.1 71 119-194 3-75 (93)
212 1pc2_A Mitochondria fission pr 97.6 0.00053 1.8E-08 52.9 9.6 92 104-200 12-111 (152)
213 3ly7_A Transcriptional activat 97.5 0.00096 3.3E-08 59.0 11.9 137 81-226 189-338 (372)
214 3qww_A SET and MYND domain-con 97.5 0.0004 1.4E-08 63.1 9.5 81 66-154 312-410 (433)
215 3qww_A SET and MYND domain-con 97.4 0.00083 2.8E-08 61.0 9.9 81 140-228 312-412 (433)
216 4e6h_A MRNA 3'-END-processing 97.3 0.0033 1.1E-07 60.4 14.3 205 34-254 326-571 (679)
217 3qwp_A SET and MYND domain-con 96.9 0.0047 1.6E-07 55.9 9.8 85 141-233 302-406 (429)
218 3qwp_A SET and MYND domain-con 96.8 0.0019 6.6E-08 58.5 6.5 80 67-154 302-399 (429)
219 4g26_A Pentatricopeptide repea 96.5 0.4 1.4E-05 44.1 20.4 148 64-223 38-200 (501)
220 1nzn_A CGI-135 protein, fissio 96.4 0.072 2.5E-06 39.4 11.8 90 68-162 17-112 (126)
221 4g26_A Pentatricopeptide repea 96.1 0.52 1.8E-05 43.3 18.8 168 26-205 35-221 (501)
222 2uy1_A Cleavage stimulation fa 95.8 0.41 1.4E-05 43.9 16.4 173 4-191 10-242 (493)
223 1nzn_A CGI-135 protein, fissio 95.5 0.083 2.8E-06 39.1 8.3 87 107-198 18-112 (126)
224 3o48_A Mitochondria fission 1 93.2 0.4 1.4E-05 35.7 7.6 81 8-94 40-120 (134)
225 3ffl_A Anaphase-promoting comp 92.8 0.8 2.7E-05 35.4 9.1 120 64-205 32-166 (167)
226 2uy1_A Cleavage stimulation fa 92.0 7 0.00024 35.5 18.6 48 68-119 195-242 (493)
227 1ya0_A SMG-7 transcript varian 92.0 0.35 1.2E-05 44.5 7.2 64 67-134 167-232 (497)
228 1y8m_A FIS1; mitochondria, unk 91.2 0.82 2.8E-05 34.5 7.3 56 66-125 56-114 (144)
229 3ffl_A Anaphase-promoting comp 91.2 1.2 3.9E-05 34.5 8.3 122 30-169 33-166 (167)
230 1ya0_A SMG-7 transcript varian 89.8 0.88 3E-05 41.8 7.7 75 124-206 154-232 (497)
231 4h7y_A Dual specificity protei 89.3 1.8 6.3E-05 33.0 7.8 17 175-191 73-89 (161)
232 1y8m_A FIS1; mitochondria, unk 88.3 1.6 5.5E-05 32.8 6.9 72 121-197 38-114 (144)
233 1qsa_A Protein (soluble lytic 87.6 15 0.0005 34.6 14.7 120 65-193 227-350 (618)
234 3mkq_A Coatomer beta'-subunit; 85.3 8.2 0.00028 36.6 12.0 85 119-224 678-762 (814)
235 3o48_A Mitochondria fission 1 85.0 9.8 0.00033 28.2 10.0 64 122-190 40-106 (134)
236 3mkq_A Coatomer beta'-subunit; 84.6 11 0.00037 35.8 12.5 96 66-187 666-761 (814)
237 3mkq_B Coatomer subunit alpha; 84.6 12 0.00043 29.0 13.4 28 156-187 32-59 (177)
238 1wy6_A Hypothetical protein ST 83.7 2.7 9.1E-05 31.7 5.9 42 157-202 124-165 (172)
239 4h7y_A Dual specificity protei 82.6 6.9 0.00024 29.8 7.9 106 81-193 8-125 (161)
240 4gns_B Protein CSD3, chitin bi 76.8 26 0.00087 33.8 11.8 109 68-186 265-395 (754)
241 2wpv_A GET4, UPF0363 protein Y 72.3 45 0.0015 28.4 13.5 106 30-150 46-158 (312)
242 4a5x_A MITD1, MIT domain-conta 71.4 4.6 0.00016 27.4 3.8 37 1-46 9-45 (86)
243 1wy6_A Hypothetical protein ST 68.0 36 0.0012 25.6 11.2 41 121-165 124-164 (172)
244 1qsa_A Protein (soluble lytic 62.6 1E+02 0.0035 28.9 13.1 118 29-156 226-349 (618)
245 4b4t_R RPN7, 26S proteasome re 61.7 21 0.00071 31.8 7.2 59 123-189 132-195 (429)
246 3lpz_A GET4 (YOR164C homolog); 60.9 80 0.0027 27.1 13.1 106 30-150 48-160 (336)
247 4gns_B Protein CSD3, chitin bi 55.9 29 0.00099 33.5 7.5 48 64-115 349-396 (754)
248 3bge_A Predicted ATPase; struc 53.4 81 0.0028 24.9 10.2 82 179-267 8-90 (201)
249 3re2_A Predicted protein; meni 53.4 34 0.0012 29.9 6.7 65 84-154 253-324 (472)
250 2dl1_A Spartin; SPG20, MIT, st 53.4 13 0.00043 26.8 3.4 36 29-80 15-50 (116)
251 2r9g_A AAA ATPase, central reg 53.1 53 0.0018 26.0 7.3 30 178-207 14-44 (204)
252 2wpv_A GET4, UPF0363 protein Y 52.9 1.1E+02 0.0036 26.0 15.1 104 66-186 47-158 (312)
253 3txn_A 26S proteasome regulato 52.7 1.2E+02 0.0041 26.6 11.1 90 125-226 102-209 (394)
254 3ctd_A Putative ATPase, AAA fa 52.0 89 0.003 24.9 8.9 82 178-266 35-117 (213)
255 2w2u_A Hypothetical P60 katani 48.2 16 0.00056 24.4 3.2 17 29-45 31-47 (83)
256 3mkq_B Coatomer subunit alpha; 48.0 93 0.0032 24.0 13.8 108 85-223 7-114 (177)
257 2v6y_A AAA family ATPase, P60 47.3 45 0.0015 22.1 5.4 12 68-79 27-38 (83)
258 2w2u_A Hypothetical P60 katani 46.7 47 0.0016 22.1 5.4 32 33-80 16-47 (83)
259 3u84_A Menin; MLL, JUND, ledgf 46.7 47 0.0016 29.6 6.6 65 84-154 275-346 (550)
260 3eab_A Spastin; spastin, MIT, 44.0 9 0.00031 26.2 1.4 17 30-46 10-26 (89)
261 3txn_A 26S proteasome regulato 43.0 1.7E+02 0.0059 25.6 16.2 84 161-252 102-209 (394)
262 4b4t_R RPN7, 26S proteasome re 42.5 68 0.0023 28.3 7.4 113 66-190 111-236 (429)
263 3lpz_A GET4 (YOR164C homolog); 40.3 1.8E+02 0.006 25.0 14.3 113 67-186 11-160 (336)
264 3o10_A Sacsin; all-helical dom 39.0 84 0.0029 23.1 6.3 44 174-227 2-45 (141)
265 2v6x_A Vacuolar protein sortin 38.9 35 0.0012 22.7 3.8 11 34-44 11-21 (85)
266 3re2_A Predicted protein; meni 37.0 78 0.0027 27.7 6.3 65 120-190 253-324 (472)
267 4gq4_A Menin; tumor suppressor 36.5 87 0.003 27.9 6.7 66 83-154 259-331 (489)
268 1wfd_A Hypothetical protein 15 35.7 84 0.0029 21.3 5.4 13 33-45 12-24 (93)
269 3kae_A CDC27, possible protein 33.6 1.7E+02 0.0058 22.8 9.5 33 119-155 110-143 (242)
270 2cpt_A SKD1 protein, vacuolar 28.0 1.6E+02 0.0055 20.8 7.1 13 33-45 15-27 (117)
271 3u84_A Menin; MLL, JUND, ledgf 27.8 1.2E+02 0.0042 27.0 6.1 65 120-190 275-346 (550)
272 2cos_A Serine/threonine protei 26.1 80 0.0027 19.2 3.3 35 113-151 13-47 (54)
273 3ctd_A Putative ATPase, AAA fa 24.4 2.7E+02 0.0092 22.1 7.6 49 142-191 91-141 (213)
274 4gq4_A Menin; tumor suppressor 23.2 2.2E+02 0.0076 25.4 6.9 65 120-190 260-331 (489)
275 1zbp_A Hypothetical protein VP 22.7 1.9E+02 0.0067 23.9 6.3 51 66-120 11-61 (273)
276 2r9g_A AAA ATPase, central reg 21.1 3.1E+02 0.01 21.6 9.0 49 143-191 70-120 (204)
277 2wb7_A PT26-6P; extra chromoso 20.8 4.8E+02 0.016 23.7 10.3 17 178-194 455-471 (526)
No 1
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=100.00 E-value=1.3e-33 Score=234.88 Aligned_cols=192 Identities=20% Similarity=0.169 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHH
Q 023425 69 KTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYY 148 (282)
Q Consensus 69 ~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~ 148 (282)
++|+.+|+++++ .|++.+++.||.+|... .++++|+.||++|++.|++.|+++||.+|.. +++++|+++|+.|
T Consensus 3 ~eA~~~~~~aa~--~g~~~a~~~lg~~~~~~----~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAE--AGDRRAQYYLADTWVSS----GDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHH--TTCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHH--CCCHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 568899999965 48999999999999874 6889999999999999999999999999998 5788899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 023425 149 IEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH----AGAAIAYGSLLLRGVQVPECLTKLNAKRVSA 224 (282)
Q Consensus 149 ~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 224 (282)
|++|++.|++.|+++||.+|..|.++++|+++|+.||++|++.|+ +.++++||.+|..|.++++|+++|+.||++|
T Consensus 76 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 76 AEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred HH-----HHchhchh------c--cCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 023425 225 AK-----KARANLES------N--LMNPVEKAKEQFEVAAQAGCNLGLRWLQRIEE 267 (282)
Q Consensus 225 ~~-----~a~~~lg~------~--~~~~~~~A~~~~~~Aa~~g~~~a~~~l~~l~~ 267 (282)
++ .++++||. + ++.|+++|+.||++|++.|++.|+..|..|.+
T Consensus 156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l~~ 211 (212)
T 3rjv_A 156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRISK 211 (212)
T ss_dssp HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 87 36677772 2 56799999999999999999999999998864
No 2
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=100.00 E-value=4.2e-32 Score=250.54 Aligned_cols=233 Identities=15% Similarity=0.081 Sum_probs=200.4
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Q 023425 32 RNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAA 111 (282)
Q Consensus 32 ~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~ 111 (282)
+.+++..++..+................. .++.+++++|+.+|+++++.++.++.++++||.+|..+.++++|.++|+.
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~-~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQK-KQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44455555554443333322222222222 66777999999999999988777777779999999999889999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 112 LLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 112 ~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
||++|+ +|++.++++||.+|+.+.. ..|+++|+.||++|++.|++.|+++||.+|..|.|+++|+++|+.||++|+ .
T Consensus 239 ~~~~aa-~g~~~a~~~Lg~~~~~~~~-~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~ 315 (452)
T 3e4b_A 239 LLEKIA-PGYPASWVSLAQLLYDFPE-LGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-G 315 (452)
T ss_dssp HHHHHG-GGSTHHHHHHHHHHHHSGG-GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-T
T ss_pred HHHHHc-CCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-C
Confidence 999999 9999999999999775544 789999999999999999999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH----HHchhch------hccCCCHHHHHHHHHHHHHhccHHHHHH
Q 023425 192 GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----KARANLE------SNLMNPVEKAKEQFEVAAQAGCNLGLRW 261 (282)
Q Consensus 192 g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~a~~~lg------~~~~~~~~~A~~~~~~Aa~~g~~~a~~~ 261 (282)
|++.|+++||.+|..|.|+++|+++|+.||++|++ .++++|| .++++|+.+|+.||++|++.|++.|...
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~ 395 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDL 395 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999998 4667777 3478899999999999999999999999
Q ss_pred HHHHHHH
Q 023425 262 LQRIEEE 268 (282)
Q Consensus 262 l~~l~~~ 268 (282)
+..+...
T Consensus 396 l~~l~~~ 402 (452)
T 3e4b_A 396 ATQLEAP 402 (452)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9998653
No 3
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=3.3e-31 Score=246.16 Aligned_cols=238 Identities=16% Similarity=0.092 Sum_probs=199.9
Q ss_pred ccchHHHHHHHHHHhhhhh-HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALK-EVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
.+++++|++||.+++.... ............+.++++|+++|+.||+++++ ++++.+++.||.+|..+.+++.++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL--KGLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 6788999999998876422 22222333444456778899999999999964 57999999999999988888889999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 109 GAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 109 A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
|+.||++|++.|+++++++||.+|..|.++++|+++|+.||+++++.|++.+++.||.+|..|.++.+|+++|+.||++|
T Consensus 134 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 213 (490)
T 2xm6_A 134 SVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKS 213 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999888888999999999999999999999999999999988899999999999999
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH----HHchhchh------ccCCCHHHHHHHHHHHHHhccHHH
Q 023425 189 SEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----KARANLES------NLMNPVEKAKEQFEVAAQAGCNLG 258 (282)
Q Consensus 189 ~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~a~~~lg~------~~~~~~~~A~~~~~~Aa~~g~~~a 258 (282)
++.|++.++++||.+|..|.++.+++++|+.||+++++ .+++++|. ++.+|+++|+.||++|++.|++.+
T Consensus 214 ~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a 293 (490)
T 2xm6_A 214 ATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDG 293 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHH
T ss_pred HHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999988888999999999999886 45666663 247788888888888888888888
Q ss_pred HHHHHHHHHHH
Q 023425 259 LRWLQRIEEEE 269 (282)
Q Consensus 259 ~~~l~~l~~~~ 269 (282)
.+.|+.+....
T Consensus 294 ~~~Lg~~y~~~ 304 (490)
T 2xm6_A 294 QYYLAHLYDKG 304 (490)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHcC
Confidence 88888887764
No 4
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=1.5e-30 Score=241.65 Aligned_cols=237 Identities=15% Similarity=0.055 Sum_probs=196.4
Q ss_pred ccchHHHHHHHHHHhhhhh-HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALK-EVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
.+++++|++||.++..... ............+.++.+|+++|+.+|+++++ ++++.+++.||.+|..+.++++|.++
T Consensus 92 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE--QGRDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 6788999999998876432 22223344444456778889999999999964 57899999999999988888889999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 109 GAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 109 A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
|+.||+++++.|++.++++||.+|..|.++++|+++|+.||+++++.|++.+++.||.+|..|.++.+|+++|+.||+++
T Consensus 170 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 170 AREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999998888888899999999999999999999999999998888889999999999999
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH----HHchhchhc-------cCCCHHHHHHHHHHHHHhccHH
Q 023425 189 SEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----KARANLESN-------LMNPVEKAKEQFEVAAQAGCNL 257 (282)
Q Consensus 189 ~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~a~~~lg~~-------~~~~~~~A~~~~~~Aa~~g~~~ 257 (282)
++.|++.++++||.+|..|.++.+|+++|+.||+++++ .+++++|.+ +.+|+++|+.||++|++.|++.
T Consensus 250 ~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~ 329 (490)
T 2xm6_A 250 AEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDAT 329 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHH
Confidence 99899999999999999888888899999999998886 456666632 3478888888888888888888
Q ss_pred HHHHHHHHHHH
Q 023425 258 GLRWLQRIEEE 268 (282)
Q Consensus 258 a~~~l~~l~~~ 268 (282)
+.+.|+.+...
T Consensus 330 a~~~lg~~y~~ 340 (490)
T 2xm6_A 330 AQANLGAIYFR 340 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888754
No 5
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.97 E-value=7.7e-31 Score=218.11 Aligned_cols=190 Identities=16% Similarity=0.062 Sum_probs=168.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHH
Q 023425 34 KKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALL 113 (282)
Q Consensus 34 ~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~ 113 (282)
.+|+.||.++.+.. +....+..+..+...+|+++|+.||++|++ ++++.++++||.+|.. +++++|.++|+.||
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAA--QGDGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 45778888877642 222333333333346789999999999965 5899999999999998 58889999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 114 VDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLH----PGALYLLGTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 114 ~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
++|+++|++.|+++||.+|..|.++++|+++|+.||++|++.|+ +.|+++||.+|..|.++++|+++|+.||++|+
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred Hc-CCHHHHHHHHHHHHcCCC--CcccHHHHHHHHHHHHHHHc
Q 023425 190 EK-GHAGAAIAYGSLLLRGVQ--VPECLTKLNAKRVSAAKKAR 229 (282)
Q Consensus 190 ~~-g~~~a~~~Lg~~y~~g~g--~~~~~~~A~~~~~~a~~~a~ 229 (282)
+. +++.++++||.+|..|.+ +++|+++|+.||++|++.+.
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 899999999999999987 99999999999999998644
No 6
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.97 E-value=1.2e-29 Score=217.43 Aligned_cols=235 Identities=15% Similarity=0.137 Sum_probs=208.1
Q ss_pred ccchHHHHHHHHHHhhhhh-HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALK-EVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
.+++++|+++|.+++.... ............+.++.+++++|+.+|+++++. +++.+++.||.+|..+.++..++++
T Consensus 19 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~ 96 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNLYYSGQGVSQNTNK 96 (273)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhCCCCcccCHHH
Confidence 4579999999999887222 111122233333445689999999999999866 6999999999999998888899999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 109 GAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 109 A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
|+.+|++|++.+++.++++||.+|..+.++..++++|+.+|++|++.+++.++++||.+|..|.++.+++++|+.+|++|
T Consensus 97 A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 176 (273)
T 1ouv_A 97 ALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKA 176 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH----HHchhchhc------cCCCHHHHHHHHHHHHHhccHHH
Q 023425 189 SEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----KARANLESN------LMNPVEKAKEQFEVAAQAGCNLG 258 (282)
Q Consensus 189 ~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~a~~~lg~~------~~~~~~~A~~~~~~Aa~~g~~~a 258 (282)
++.+++.++++||.+|..|.++.+++++|+.||+++++ .+++++|.+ +.+++++|+.||++|++.|++.+
T Consensus 177 ~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 177 CDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999997 466677733 48899999999999999999999
Q ss_pred HHHHHHHH
Q 023425 259 LRWLQRIE 266 (282)
Q Consensus 259 ~~~l~~l~ 266 (282)
..+|..+.
T Consensus 257 ~~~l~~~~ 264 (273)
T 1ouv_A 257 CDILKQLK 264 (273)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHHH
Confidence 99988664
No 7
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.97 E-value=2.2e-29 Score=232.31 Aligned_cols=216 Identities=17% Similarity=0.043 Sum_probs=187.9
Q ss_pred chHHHHHHHHHHhhhhhHH-H--HHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 32 RNKKAMELIAKGWSALKEV-D--RVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 32 ~~~~A~e~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
++++|++||.+++...... . ......+..+.++.+|+++|+.||++++ ||++.++++||.+|..+.+ ..|.++
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~-~~d~~~ 269 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPE-LGDVEQ 269 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGG-GCCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCC-CCCHHH
Confidence 8999999999998755422 1 2344555566788899999999999995 8999999999999765544 589999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 109 GAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 109 A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
|+.||++|++.|++.|+++||.+|..|.++++|+++|+.||++|+ .|++.|+++||.+|..|.|+++|+++|+.||++|
T Consensus 270 A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 270 MMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH----Hchhchhc----cCCCHHHHHHHHHHHHH
Q 023425 189 SEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK----ARANLESN----LMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 189 ~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----a~~~lg~~----~~~~~~~A~~~~~~Aa~ 252 (282)
++.|++.|+++||.+|..|.|+++|+++|..||++|++. +...++.+ .+.+..+|....++-..
T Consensus 349 a~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 349 ARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999984 44455533 44466677666665444
No 8
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.96 E-value=8e-28 Score=205.95 Aligned_cols=201 Identities=20% Similarity=0.171 Sum_probs=190.1
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+++++|+.+|+++++ ++++.+++.||.+|..+.++..++++|+.+|++|++.+++.++++||.+|..|.++..++++|
T Consensus 20 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A 97 (273)
T 1ouv_A 20 KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKA 97 (273)
T ss_dssp TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHH
Confidence 469999999999976 799999999999999987788999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 146 FYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 146 ~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
+.+|++|++.+++.++++||.+|..|.++.+++++|+.+|++|++.+++.++++||.+|..|.++.+++++|+.+|++++
T Consensus 98 ~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 177 (273)
T 1ouv_A 98 LQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKAC 177 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H----HHchhchhc------cCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 023425 226 K----KARANLESN------LMNPVEKAKEQFEVAAQAGCNLGLRWLQRIEEE 268 (282)
Q Consensus 226 ~----~a~~~lg~~------~~~~~~~A~~~~~~Aa~~g~~~a~~~l~~l~~~ 268 (282)
+ .+++++|.+ +.+++++|+.||++|++.+++.+.+.|+.+...
T Consensus 178 ~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 178 DLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 230 (273)
T ss_dssp HTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 8 466777733 388999999999999999999999999999986
No 9
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.95 E-value=3.1e-27 Score=183.51 Aligned_cols=135 Identities=19% Similarity=0.091 Sum_probs=97.1
Q ss_pred cCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCc
Q 023425 60 NDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYV 139 (282)
Q Consensus 60 ~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~ 139 (282)
.+.++++|+++|+.||+++++. +++.++ ||.+|..+.++ ++|++||++|++.|++.|+++||.+|..|.+++
T Consensus 3 ~G~g~~~d~~~A~~~~~~aa~~--g~~~a~--lg~~y~~g~~~----~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 3 GGGTVKKDLKKAIQYYVKACEL--NEMFGC--LSLVSNSQINK----QKLFQYLSKACELNSGNGCRFLGDFYENGKYVK 74 (138)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHT--TCTTHH--HHHHTCTTSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred CCcCCccCHHHHHHHHHHHHcC--CCHhhh--HHHHHHcCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCC
Confidence 3566777777777777777644 566666 77777766433 557777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023425 140 QSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGS 202 (282)
Q Consensus 140 ~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~ 202 (282)
+|+++|+.||++|++.|++.|+++||.+|..|.|+++|+++|++||++|++.|++.|+++|+.
T Consensus 75 ~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~ 137 (138)
T 1klx_A 75 KDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137 (138)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence 777777777777777777777777777777777777777777777777777777777777664
No 10
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.95 E-value=1.1e-26 Score=180.38 Aligned_cols=131 Identities=18% Similarity=0.147 Sum_probs=122.0
Q ss_pred hcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCcc
Q 023425 97 LKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKK 176 (282)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~ 176 (282)
..|.++++|+++|+.||++|++.|++.|+ ||.+|..+.++ ++|+.||++|++.|++.|+++||.+|..|.|+++
T Consensus 2 ~~G~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~----~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 2 VGGGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINK----QKLFQYLSKACELNSGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC
T ss_pred CCCcCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCc
Confidence 35677889999999999999999999999 99999998777 7799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH----Hchhch
Q 023425 177 DIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK----ARANLE 233 (282)
Q Consensus 177 d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----a~~~lg 233 (282)
|+++|++||++|++.|++.|+++||.+|..|.|+++|+++|+.||++|++. ++.+|+
T Consensus 76 d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~ 136 (138)
T 1klx_A 76 DLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILN 136 (138)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC-
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999984 555554
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.81 E-value=7.5e-18 Score=150.62 Aligned_cols=221 Identities=16% Similarity=0.041 Sum_probs=126.1
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHH
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGA 110 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~ 110 (282)
+++++|++.+.+++...+ .........+......+++++|+.+|+++++.+|+++.+++.+|.++... .++++|+
T Consensus 149 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----~~~~~A~ 223 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA----RIFDRAV 223 (388)
T ss_dssp SCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT----TCTTHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CCHHHHH
Confidence 555555555555544222 11222223333333344566666666666666666666666666666544 3345666
Q ss_pred HHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 111 ALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 111 ~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
..|+++++ +.++.+++++|.+|...+ ++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+
T Consensus 224 ~~~~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 295 (388)
T 1w3b_A 224 AAYLRALSLSPNHAVVHGNLACVYYEQG----LIDLAIDTYRRAIELQPHFPDAYCNLANALKE----KGSVAEAEDCYN 295 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHHH
T ss_pred HHHHHHHhhCcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Confidence 66666653 445666666666666533 336666666666655 456666666666666 666666666666
Q ss_pred HHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc--
Q 023425 187 RASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG-- 254 (282)
Q Consensus 187 ~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g-- 254 (282)
++++. .++.++.++|.+|.. .+++++|+.+|+++.+ .+++++|. ...+++++|+.+|+++.+..
T Consensus 296 ~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 296 TALRLCPTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHhhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 66553 356666666666665 5666666666666654 34555553 35566667777777766644
Q ss_pred cHHHHHHHHHHHHH
Q 023425 255 CNLGLRWLQRIEEE 268 (282)
Q Consensus 255 ~~~a~~~l~~l~~~ 268 (282)
++.+...++.+...
T Consensus 372 ~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 372 FADAYSNMGNTLKE 385 (388)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHhHHHHHHH
Confidence 45555555555443
No 12
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.81 E-value=1.1e-18 Score=144.76 Aligned_cols=175 Identities=18% Similarity=0.074 Sum_probs=133.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCc---
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYV--- 139 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~--- 139 (282)
.+++++|+..|+++++.+|+++.+++.+|.++... .++++|+.+|++++ ++++++++++||.++.......
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~----g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~ 93 (217)
T 2pl2_A 18 LGRYDAALTLFERALKENPQDPEALYWLARTQLKL----GLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDR 93 (217)
T ss_dssp TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhh
Confidence 34589999999999999999999999999999866 56799999999987 4678999999999988730000
Q ss_pred ----CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCcc
Q 023425 140 ----QSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-GHAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 140 ----~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-g~~~a~~~Lg~~y~~g~g~~~ 212 (282)
.++++|+..|+++++. +++.+++++|.+|.. .+++++|+.+|++|++. .++.+++++|.+|.. .+
T Consensus 94 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~----~g 165 (217)
T 2pl2_A 94 ERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL----LGERDKAEASLKQALALEDTPEIRSALAELYLS----MG 165 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HT
T ss_pred cccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchHHHHHHHHHHHH----cC
Confidence 4559999999999886 689999999999998 89999999999998665 678899999999988 88
Q ss_pred cHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHH
Q 023425 213 CLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAA 251 (282)
Q Consensus 213 ~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa 251 (282)
++++|+.+|+++++ .++.++|. ...+++++|+.+|+++-
T Consensus 166 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 166 RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 89999999999887 46667774 36778888988887753
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.1e-17 Score=144.94 Aligned_cols=220 Identities=13% Similarity=0.034 Sum_probs=125.2
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIP-LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
.+++++|++++.+.+...+. .....+..+......+ ++++|+.+|+++++.+|.++.+++.+|.++... .++++
T Consensus 69 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~----~~~~~ 143 (330)
T 3hym_B 69 LNKANELFYLSHKLVDLYPS-NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE----SEHDQ 143 (330)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH----TCHHH
T ss_pred hhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc----cCHHH
Confidence 44556666666555542221 1122222222222333 466666666666666666666666666666543 34566
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
|+..|+++.+ ++++.+++.+|.+|.. ..++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+
T Consensus 144 A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 215 (330)
T 3hym_B 144 AMAAYFTAAQLMKGCHLPMLYIGLEYGL----TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ----NGEWKTAEKW 215 (330)
T ss_dssp HHHHHHHHHHHTTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cccHHHHHHH
Confidence 6666666653 3455666666666665 33336666666666655 456666666666666 6666666666
Q ss_pred HHHHHH-----------cCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHH
Q 023425 185 FHRASE-----------KGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKE 245 (282)
Q Consensus 185 ~~~A~~-----------~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~ 245 (282)
|+++++ ...+.+++++|.+|.. .+++++|+.+|+++.. .++.++|. ...+++++|+.
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK----LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHH
Confidence 666655 2334566666666665 5666666666666665 34445553 25566666666
Q ss_pred HHHHHHHhc--cHHHHHHHHHHH
Q 023425 246 QFEVAAQAG--CNLGLRWLQRIE 266 (282)
Q Consensus 246 ~~~~Aa~~g--~~~a~~~l~~l~ 266 (282)
+|+++.+.. ++.+...++...
T Consensus 292 ~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 292 YFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHHHHHHHHHH
Confidence 666666554 455555555544
No 14
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.80 E-value=2.6e-17 Score=147.14 Aligned_cols=222 Identities=16% Similarity=0.045 Sum_probs=155.2
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.+.+++...+. ........+......+++++|+..|+++++.+|+++.+++.+|.++... .+.++|
T Consensus 114 ~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A 188 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ----GEIWLA 188 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT----TCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHH
Confidence 34455555555554432221 1112222222233346678888888888888888888888888887755 466888
Q ss_pred HHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 110 AALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 110 ~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
+.+|++++ .+.++++++++|.++...+.. ++|+..|+++... .++.++.++|.+|.. .+++++|+.+|
T Consensus 189 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~ 260 (388)
T 1w3b_A 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIF----DRAVAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAIDTY 260 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT----THHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH----HHHHHHHHHHHhhCcCCHHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 88888876 356778888888888774444 8888888888775 567888888888887 78888888888
Q ss_pred HHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc-
Q 023425 186 HRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG- 254 (282)
Q Consensus 186 ~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g- 254 (282)
+++++. .++.+++++|.+|.. .+++++|+.+|+++.+ ..+.++|. ...+++++|+.+|+++.+..
T Consensus 261 ~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 336 (388)
T 1w3b_A 261 RRAIELQPHFPDAYCNLANALKE----KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336 (388)
T ss_dssp HHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred HHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 888775 457888888888887 7888888888888876 35566663 36778888888888888754
Q ss_pred -cHHHHHHHHHHHHH
Q 023425 255 -CNLGLRWLQRIEEE 268 (282)
Q Consensus 255 -~~~a~~~l~~l~~~ 268 (282)
++.+...++.+...
T Consensus 337 ~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQ 351 (388)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHH
Confidence 45566666666543
No 15
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.78 E-value=1.9e-17 Score=132.83 Aligned_cols=157 Identities=18% Similarity=0.122 Sum_probs=133.3
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHH
Q 023425 53 VIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGC 130 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~ 130 (282)
.+++..|..+...+++++|+.+|+++++.+|+++.+++.||.+|... .++++|+..+.++.. +.++.++..+|.
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDI----GLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 34455555555667799999999999999999999999999999976 577999999999974 578999999999
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 131 RLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 131 ~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
++.. ..+++.|..++.++... .++.++..+|.+|.. .+++++|+.+|+++++. .++.+++++|.+|..
T Consensus 82 ~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 82 ANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 9998 45569999999999886 689999999999999 99999999999999875 579999999999998
Q ss_pred CCCCcccHHHHHHHHHHHH
Q 023425 207 GVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 207 g~g~~~~~~~A~~~~~~a~ 225 (282)
.+++++|+.+|++|+
T Consensus 154 ----~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 154 ----KGLRDEAVKYFKKAL 168 (184)
T ss_dssp ----TTCHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHH
Confidence 666665444444443
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=1.2e-17 Score=148.01 Aligned_cols=209 Identities=12% Similarity=-0.051 Sum_probs=169.3
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++.+.+++...+. .....+..+..+...+++++|+.+|+++++.+|.++.+++.||.+|... .++++
T Consensus 77 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~ 151 (365)
T 4eqf_A 77 KEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT----SHQQD 151 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHH
T ss_pred HCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc----ccHHH
Confidence 367899999999998874443 3445555555566668899999999999999999999999999999976 57799
Q ss_pred HHHHHHHHHhCC--CHHHH----------HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C--CHHHHHHHHHHHhcCC
Q 023425 109 GAALLVDAANMG--DPDAQ----------YELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L--HPGALYLLGTVYLTGD 172 (282)
Q Consensus 109 A~~~~~~Aa~~g--~~~A~----------~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g--~~~A~~~Lg~~y~~g~ 172 (282)
|+.+|+++++.. ++.++ ..+|.++.. ..++++|+.+|+++.+. . ++.+++.+|.+|..
T Consensus 152 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-- 225 (365)
T 4eqf_A 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD----SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL-- 225 (365)
T ss_dssp HHHHHHHHHHHCHHHHCC-------------------C----CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH--
Confidence 999999998642 23333 345777777 44559999999999987 3 78999999999999
Q ss_pred CCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHH
Q 023425 173 CVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEK 242 (282)
Q Consensus 173 g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~ 242 (282)
.+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++.. .++.++|. ...+++++
T Consensus 226 --~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 226 --SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN----GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp --HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred --CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999875 578999999999998 8999999999999987 46778884 47889999
Q ss_pred HHHHHHHHHHhc
Q 023425 243 AKEQFEVAAQAG 254 (282)
Q Consensus 243 A~~~~~~Aa~~g 254 (282)
|+.+|++|.+..
T Consensus 300 A~~~~~~al~~~ 311 (365)
T 4eqf_A 300 AVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999999976
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=9.2e-17 Score=139.11 Aligned_cols=225 Identities=12% Similarity=-0.070 Sum_probs=185.7
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.+.+.+...+... ...+..+......+++++|+.+|+++++.+|.++.+++.+|.++...+ .++++|
T Consensus 35 ~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~A 110 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEKDPFHA-SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG---HKNEHA 110 (330)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCT-TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC---SCHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCh-hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh---hhHHHH
Confidence 6889999999999876444221 111111122233467999999999999999999999999999998662 267999
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
+.+|+++++ +.++.+++.+|.++.. ..++++|+.+|+++.+. +++.+++.+|.+|.. .+++++|+.+|
T Consensus 111 ~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~ 182 (330)
T 3hym_B 111 RRYLSKATTLEKTYGPAWIAYGHSFAV----ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL----TNNSKLAERFF 182 (330)
T ss_dssp HHHHHHHHTTCTTCTHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH----HhhHHHHHHHH
Confidence 999999985 4688999999999998 55569999999999986 568999999999999 89999999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH---------------Hchhchh--ccCCCHHHHHHH
Q 023425 186 HRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK---------------ARANLES--NLMNPVEKAKEQ 246 (282)
Q Consensus 186 ~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------------a~~~lg~--~~~~~~~~A~~~ 246 (282)
+++++. .++.+++.+|.+|.. .+++++|..+++++... .+.++|. ...+++++|+.+
T Consensus 183 ~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 183 SQALSIAPEDPFVMHEVGVVAFQ----NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHH----cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999885 578999999999998 89999999999999873 4556773 478899999999
Q ss_pred HHHHHHhc--cHHHHHHHHHHHHHHh
Q 023425 247 FEVAAQAG--CNLGLRWLQRIEEEEK 270 (282)
Q Consensus 247 ~~~Aa~~g--~~~a~~~l~~l~~~~~ 270 (282)
|+++.+.. ++.+...++.+.....
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g 284 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMG 284 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHT
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhc
Confidence 99999876 5677788888776554
No 18
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=1.1e-17 Score=138.87 Aligned_cols=184 Identities=16% Similarity=0.096 Sum_probs=142.4
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCC-----
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPG----- 103 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~----- 103 (282)
..+++++|+..+.+++...+. .....+..+......+++++|+..|+++++.+|+++.++++||.++.......
T Consensus 17 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 95 (217)
T 2pl2_A 17 ALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRER 95 (217)
T ss_dssp HTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcc
Confidence 356799999999999874443 33444555555555678999999999999999999999999999998530000
Q ss_pred --cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCH
Q 023425 104 --ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDI 178 (282)
Q Consensus 104 --~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~ 178 (282)
.++++|+..|+++++ ++++.+++++|.+|...+ ++++|+.+|+++++. +++.+++++|.+|.. .+++
T Consensus 96 ~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~la~~~~~----~g~~ 167 (217)
T 2pl2_A 96 GKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG----ERDKAEASLKQALALEDTPEIRSALAELYLS----MGRL 167 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HTCH
T ss_pred cccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhcccchHHHHHHHHHHHH----cCCH
Confidence 467999999999984 789999999999999944 459999999999876 789999999999999 9999
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 179 ASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 179 ~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
++|+.+|+++++. +++.+++++|.++.. .+++++|+.+|+++-
T Consensus 168 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 168 DEALAQYAKALEQAPKDLDLRVRYASALLL----KGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------------
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHh
Confidence 9999999999875 689999999999998 889999999998764
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.74 E-value=2e-15 Score=131.80 Aligned_cols=225 Identities=10% Similarity=-0.014 Sum_probs=150.5
Q ss_pred ccchHHHHHHHHHHhhhhh---HHHHHHHHHh------------hcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSALK---EVDRVIDYCE------------LNDRRLIPLLKTAKENFELALEADNSNTHARYWLSK 94 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~---~~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~ 94 (282)
.+++++|++.+.+++...+ .... ..... +......+++++|+.+|+++++..|+++.++..+|.
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKE-AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHH-HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 5667777777777665433 2211 11111 223333466777777777777777777777777777
Q ss_pred HHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHH--------
Q 023425 95 LHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALY-------- 162 (282)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~-------- 162 (282)
++... .++++|+.+|+++++ +.++.+++.+|.++.. ..++++|+.+|+++.+. .++.++.
T Consensus 163 ~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 163 CFIKE----GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHT----TCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHC----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 77755 466777777777774 4577777778877777 44457788888877765 4444433
Q ss_pred ----HHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CH----HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------
Q 023425 163 ----LLGTVYLTGDCVKKDIASALWCFHRASEKG--HA----GAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------ 226 (282)
Q Consensus 163 ----~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------ 226 (282)
.+|.++.. .+++++|+.+|+++++.. ++ .++..+|.+|.. .+++++|+.+|+++.+
T Consensus 235 ~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 306 (359)
T 3ieg_A 235 NKLIESAEELIR----DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSK----DEKPVEAIRICSEVLQMEPDNV 306 (359)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCcccH
Confidence 34666776 677888888888877643 22 346667888877 7778888888888876
Q ss_pred HHchhchh--ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhh
Q 023425 227 KARANLES--NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEEKR 271 (282)
Q Consensus 227 ~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~~~ 271 (282)
..++.+|. ...+++++|+.+|+++.+.. ++.+...|..+....+.
T Consensus 307 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 307 NALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 35556663 36778888888888888765 56666777777665543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=1.6e-16 Score=140.28 Aligned_cols=195 Identities=17% Similarity=0.046 Sum_probs=139.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCC----
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDY---- 138 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~---- 138 (282)
.+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.+|...+..
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN----EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC 152 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34466666666666666666666666666666644 345666666666653 34566666666666553222
Q ss_pred -----------------------------------------cCCHHHHHHHHHHHHHc--C--CHHHHHHHHHHHhcCCC
Q 023425 139 -----------------------------------------VQSDQQAFYYIEKAVDQ--L--HPGALYLLGTVYLTGDC 173 (282)
Q Consensus 139 -----------------------------------------~~d~~~A~~~~~kAa~~--g--~~~A~~~Lg~~y~~g~g 173 (282)
..++++|+.+|+++.+. . ++.++..+|.+|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~--- 229 (368)
T 1fch_A 153 EILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL--- 229 (368)
T ss_dssp HHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH---
Confidence 12335555555555554 2 67889999999998
Q ss_pred CccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHH
Q 023425 174 VKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKA 243 (282)
Q Consensus 174 ~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A 243 (282)
.+++++|+.+|++++.. .++.+++++|.+|.. .+++++|+.+|+++.. .+++++|. ...+++++|
T Consensus 230 -~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 230 -SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN----GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 89999999999999875 568899999999998 8899999999999987 46777884 478899999
Q ss_pred HHHHHHHHHhcc-------------HHHHHHHHHHHHHHhh
Q 023425 244 KEQFEVAAQAGC-------------NLGLRWLQRIEEEEKR 271 (282)
Q Consensus 244 ~~~~~~Aa~~g~-------------~~a~~~l~~l~~~~~~ 271 (282)
+.+|+++.+... ..+...|+.+.....+
T Consensus 305 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 305 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 999999998763 5677778877776543
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=1e-16 Score=144.58 Aligned_cols=222 Identities=11% Similarity=-0.027 Sum_probs=162.9
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPL-LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
.+++++|++.+.+++...+ ......+..+..+...++ +++|+.+|+++++.+|.++.+++++|.++... .++++
T Consensus 110 ~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~----g~~~e 184 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL----RDPSQ 184 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCCTT
T ss_pred CCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc----cCHHH
Confidence 4678999999999887443 334444445454445564 99999999999999999999999999998866 35588
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHH---
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASA--- 181 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A--- 181 (282)
|+..|++|++ ++++.+++++|.++...+.. ++|+.+|+++++. .++.+++++|.+|..-. +..++|
T Consensus 185 Al~~~~kal~ldP~~~~a~~~lg~~~~~~g~~----~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~---~~~~eA~~~ 257 (382)
T 2h6f_A 185 ELEFIADILNQDAKNYHAWQHRQWVIQEFKLW----DNELQYVDQLLKEDVRNNSVWNQRYFVISNTT---GYNDRAVLE 257 (382)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC----TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CSCSHHHHH
T ss_pred HHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CcchHHHHH
Confidence 9999999974 67899999999999885555 8899999999887 68999999999988721 122444
Q ss_pred --HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchhc--cC--------CC-H
Q 023425 182 --LWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLESN--LM--------NP-V 240 (282)
Q Consensus 182 --~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~~--~~--------~~-~ 240 (282)
+.+|++|+.. +++.+++++|.++... | ..++++|+..++++ + .++..+|.+ .. ++ +
T Consensus 258 ~el~~~~~Al~l~P~~~~a~~~l~~ll~~~-g-~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~ 334 (382)
T 2h6f_A 258 REVQYTLEMIKLVPHNESAWNYLKGILQDR-G-LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334 (382)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-C-GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHcc-C-ccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHH
Confidence 6889998775 5788999999988861 1 23677888888776 3 244455522 11 22 5
Q ss_pred HHHHHHHHHH-HHhccHHHHHHHHHHH
Q 023425 241 EKAKEQFEVA-AQAGCNLGLRWLQRIE 266 (282)
Q Consensus 241 ~~A~~~~~~A-a~~g~~~a~~~l~~l~ 266 (282)
++|+.+|+++ .+.......+|+....
T Consensus 335 ~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 335 NKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 8899999998 6776655555554433
No 22
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=1.3e-16 Score=135.08 Aligned_cols=224 Identities=13% Similarity=0.045 Sum_probs=171.5
Q ss_pred hcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHhcCCCCC
Q 023425 28 WLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNT----HARYWLSKLHLKYHVPG 103 (282)
Q Consensus 28 ~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~----~a~~~Lg~~~~~~~~~~ 103 (282)
...+++++|++.+.+++...+.. ....+..+..+...+++++|+.+|+++++ .++++ .+++.+|.++...
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~---- 87 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKKYNS-PYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKK---- 87 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCCC-STTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHT----
T ss_pred HHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHc----
Confidence 34667999999999988754322 22233333334445779999999999997 44444 4589999999976
Q ss_pred cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH-HHHhcCCCCccCH
Q 023425 104 ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLG-TVYLTGDCVKKDI 178 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg-~~y~~g~g~~~d~ 178 (282)
.++++|+.+|+++++ +.++.++..+|.+|.. ..++++|+.+|+++++. .++.+++.+| .+|.. +++
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-----~~~ 158 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN----KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-----KEY 158 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-----TCH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-----HHH
Confidence 578999999999985 5789999999999998 45559999999999986 6899999999 88877 399
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH--------------Hchhchh--ccCCCH
Q 023425 179 ASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK--------------ARANLES--NLMNPV 240 (282)
Q Consensus 179 ~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------------a~~~lg~--~~~~~~ 240 (282)
++|+.+|+++++. .++.+++.+|.++..- +...++++|+.+|+++.+. ++..+|. ...+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQ-DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHc-CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999885 4689999999999872 1122266778888887763 3445664 478999
Q ss_pred HHHHHHHHHHHHhc--cHHHHHHHHHHHH
Q 023425 241 EKAKEQFEVAAQAG--CNLGLRWLQRIEE 267 (282)
Q Consensus 241 ~~A~~~~~~Aa~~g--~~~a~~~l~~l~~ 267 (282)
++|+.+|+++.+.. ++.+...+..+..
T Consensus 238 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 99999999999876 6667666665544
No 23
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.72 E-value=5.6e-16 Score=124.09 Aligned_cols=164 Identities=13% Similarity=0.006 Sum_probs=146.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPG 159 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~ 159 (282)
.++..+++||.+|... +++++|+.+|+++++ +.++++++.||.+|.. ..++++|+.++.++... .++.
T Consensus 3 e~~~iy~~lG~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 74 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTK----GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD----IGLPNDAIESLKKFVVLDTTSAE 74 (184)
T ss_dssp -CHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHH
T ss_pred cHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCchhHH
Confidence 4688999999999965 588999999999984 6899999999999999 44559999999999886 6899
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchh
Q 023425 160 ALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARAN 231 (282)
Q Consensus 160 A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~ 231 (282)
++..+|.++.. .++++.|..++.++... .++.+++.+|.+|.. .+++++|+.+|+++.+ .++++
T Consensus 75 ~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 75 AYYILGSANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAYEKTISIKPGFIRAYQS 146 (184)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHHHHHHHhcchhhhHHHH
Confidence 99999999999 89999999999999775 579999999999999 8999999999999998 57888
Q ss_pred chh--ccCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 023425 232 LES--NLMNPVEKAKEQFEVAAQAGCNLGLRWLQ 263 (282)
Q Consensus 232 lg~--~~~~~~~~A~~~~~~Aa~~g~~~a~~~l~ 263 (282)
+|. ...+++++|+.+|++|++..+..+.++|+
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~la 180 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELA 180 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHCSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCccCHHHHHH
Confidence 984 48889999999999999998887776654
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=3.8e-16 Score=140.83 Aligned_cols=194 Identities=11% Similarity=-0.076 Sum_probs=161.8
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCC
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQS 141 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d 141 (282)
..+++++|+..|+++++.+|+++.+++++|.++...+ .++++|+.+|+++++ +.++.+++++|.++...+..
T Consensus 109 ~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g---~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~--- 182 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ---KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP--- 182 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC---
T ss_pred HCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcc---cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH---
Confidence 3456999999999999999999999999999998662 248999999999985 67999999999999985555
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCccc-HH
Q 023425 142 DQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR-GVQVPEC-LT 215 (282)
Q Consensus 142 ~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~-g~g~~~~-~~ 215 (282)
++|+.+|++|++. +++.+++++|.++.. .+++++|+.+|+++++. .++.+++++|.+|.. +...... .+
T Consensus 183 -~eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~ 257 (382)
T 2h6f_A 183 -SQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE 257 (382)
T ss_dssp -TTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred -HHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHH
Confidence 9999999999987 799999999999999 89999999999999886 579999999999998 3322333 34
Q ss_pred HHHHHHHHHHH------HHchhchhc--cCC--CHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Q 023425 216 KLNAKRVSAAK------KARANLESN--LMN--PVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 216 ~A~~~~~~a~~------~a~~~lg~~--~~~--~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~ 269 (282)
.++.+|++++. .+|+++|.+ ..+ ++++|+.+++++ +.. ++.+...|+.+....
T Consensus 258 ~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 258 REVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 45799999987 588888843 333 688999999887 433 667777888777664
No 25
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.71 E-value=1.3e-14 Score=131.52 Aligned_cols=224 Identities=8% Similarity=-0.034 Sum_probs=177.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHH---HHH-----------HHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVD---RVI-----------DYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKL 95 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~---~~~-----------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~ 95 (282)
.+++++|++.+.+++...+... ... .+..+......+++++|+.+|+++++..|.++.+++.+|.+
T Consensus 107 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 186 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186 (450)
T ss_dssp TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 6778888888888776433221 110 11122223345779999999999999999999999999999
Q ss_pred HhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH-------
Q 023425 96 HLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLL------- 164 (282)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~L------- 164 (282)
|... .++++|+.+|++++ .+.++.+++.+|.+|... .++++|+.+|+++... +++.+...+
T Consensus 187 ~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 187 FIKE----GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL----GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHT----TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHC----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 9976 46699999999997 467899999999999984 4559999999999876 567766555
Q ss_pred -----HHHHhcCCCCccCHHHHHHHHHHHHHcC--C----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------H
Q 023425 165 -----GTVYLTGDCVKKDIASALWCFHRASEKG--H----AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------K 227 (282)
Q Consensus 165 -----g~~y~~g~g~~~d~~~A~~~~~~A~~~g--~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~ 227 (282)
|.++.. .+++++|+.+|+++++.. + ..++..+|.++.. .+++++|+.+++++.. .
T Consensus 259 ~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~ 330 (450)
T 2y4t_A 259 KLIESAEELIR----DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK----DEKPVEAIRVCSEVLQMEPDNVN 330 (450)
T ss_dssp HHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHH
Confidence 888888 899999999999998753 3 3478999999998 8899999999999986 4
Q ss_pred Hchhchh--ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Q 023425 228 ARANLES--NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 228 a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~ 269 (282)
++..+|. ...+++++|+.+|+++.+.. ++.+...++.+....
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 6777884 47889999999999998865 677888888776554
No 26
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.71 E-value=9.1e-15 Score=127.62 Aligned_cols=223 Identities=14% Similarity=0.021 Sum_probs=127.4
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCC---CCHHHHHHH------------HH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADN---SNTHARYWL------------SK 94 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---g~~~a~~~L------------g~ 94 (282)
.+++++|++.+.+++...+. .....+..+......+++++|+.+|+++++.+| .++.++..+ |.
T Consensus 50 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 50 MGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665543221 122333333333344556666666666666666 556665555 34
Q ss_pred HHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 95 LHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
++... .++++|+.+|+++++ +.++.++..+|.++.. ..++++|+.+|+++.+. .++.+++.+|.+|..
T Consensus 129 ~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 129 DAFDG----ADYTAAITFLDKILEVCVWDAELRELRAECFIK----EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH
T ss_pred HHHHc----cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44433 355666666666653 4556666666666666 33346666666666655 456666666666666
Q ss_pred CCCCccCHHHHHHHHHHHHHc--CCHHHH------------HHHHHHHHcCCCCcccHHHHHHHHHHHHH----------
Q 023425 171 GDCVKKDIASALWCFHRASEK--GHAGAA------------IAYGSLLLRGVQVPECLTKLNAKRVSAAK---------- 226 (282)
Q Consensus 171 g~g~~~d~~~A~~~~~~A~~~--g~~~a~------------~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------- 226 (282)
.+++++|+.+|+++++. .++.+. ..+|.++.. .+++++|+.+|+++..
T Consensus 201 ----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 272 (359)
T 3ieg_A 201 ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATSKYESVMKTEPSVAEYTV 272 (359)
T ss_dssp ----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred ----cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHH
Confidence 66666666666666553 233322 233555665 5666677777766665
Q ss_pred HHchhch--hccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Q 023425 227 KARANLE--SNLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 227 ~a~~~lg--~~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~ 269 (282)
.++..+| ....+++++|+.+|+++.+.. ++.+...++.+....
T Consensus 273 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 273 RSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 1233445 235677778888888777754 456666666666543
No 27
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.71 E-value=2.3e-16 Score=152.87 Aligned_cols=153 Identities=16% Similarity=0.040 Sum_probs=137.2
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcC
Q 023425 58 ELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVE 135 (282)
Q Consensus 58 ~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g 135 (282)
.|..+...+++++|+.+|++|++.+|+++.++++||.+|... .++++|+..|++|++ +++++++++||.+|...
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~----g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~ 90 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ----GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 90 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 333334456699999999999999999999999999999976 577999999999974 67999999999999994
Q ss_pred CCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCc
Q 023425 136 NDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVP 211 (282)
Q Consensus 136 ~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~ 211 (282)
.++++|+.+|++|++. +++.++++||.+|.. .+++++|+.+|++|++. +++.++++||.+|.. .
T Consensus 91 ----g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~----~ 158 (723)
T 4gyw_A 91 ----QDVQGALQCYTRAIQINPAFADAHSNLASIHKD----SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI----V 158 (723)
T ss_dssp ----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----T
T ss_pred ----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh----c
Confidence 4559999999999987 789999999999999 99999999999999875 689999999999998 7
Q ss_pred ccHHHHHHHHHHHHH
Q 023425 212 ECLTKLNAKRVSAAK 226 (282)
Q Consensus 212 ~~~~~A~~~~~~a~~ 226 (282)
++++.|...|+++.+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 888999999999987
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.5e-15 Score=124.55 Aligned_cols=200 Identities=14% Similarity=0.057 Sum_probs=153.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHhcCCCC
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN-------THARYWLSKLHLKYHVP 102 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~-------~~a~~~Lg~~~~~~~~~ 102 (282)
.+++++|++.+.+++... ......+..+..+...+++++|+.+|+++++..|.+ +.+++.+|.++...
T Consensus 18 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 92 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL--- 92 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---
T ss_pred hccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc---
Confidence 456788888888777644 333444444445555567888888888888776666 67888888888765
Q ss_pred CcCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHH
Q 023425 103 GACKAMGAALLVDAANM-GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIA 179 (282)
Q Consensus 103 ~~~~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~ 179 (282)
.++++|+.+|+++.+. ..++.+..+|. +++|+.+++++... .++.+++.+|.+|.. .++++
T Consensus 93 -~~~~~A~~~~~~a~~~~~~~~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 156 (258)
T 3uq3_A 93 -GDLKKTIEYYQKSLTEHRTADILTKLRN-----------AEKELKKAEAEAYVNPEKAEEARLEGKEYFT----KSDWP 156 (258)
T ss_dssp -TCHHHHHHHHHHHHHHCCCHHHHHHHHH-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----TTCHH
T ss_pred -ccHHHHHHHHHHHHhcCchhHHHHHHhH-----------HHHHHHHHHHHHHcCcchHHHHHHHHHHHHH----hcCHH
Confidence 5668888888888754 34444444443 37788888887776 467889999999998 89999
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHH
Q 023425 180 SALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEV 249 (282)
Q Consensus 180 ~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~ 249 (282)
+|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++.. .++..+|. ...+++++|+.+|++
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999875 568899999999998 8899999999999987 46677774 478899999999999
Q ss_pred HHHhc
Q 023425 250 AAQAG 254 (282)
Q Consensus 250 Aa~~g 254 (282)
+.+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99887
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=1.7e-15 Score=130.86 Aligned_cols=224 Identities=13% Similarity=-0.078 Sum_probs=177.8
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++.+.+++...+. .....+..+......+++++|+.+|+++++.+|.++.+++.+|.++... .++++
T Consensus 33 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----~~~~~ 107 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE----HNANA 107 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc----CCHHH
Confidence 367799999999998874443 2333444444555567899999999999999999999999999999866 57799
Q ss_pred HHHHHHHHHhC--CCHHHHHHH--------------HH-HHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 023425 109 GAALLVDAANM--GDPDAQYEL--------------GC-RLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYL 169 (282)
Q Consensus 109 A~~~~~~Aa~~--g~~~A~~~L--------------g~-~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~ 169 (282)
|+.+|+++.+. .+...+..+ |. ++.. ..++++|+.+|+++.+. .++.++..+|.+|.
T Consensus 108 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 108 ALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA----PNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHTSTTTTTC--------------------CCTTS----HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 99999999864 445555554 44 3444 44569999999999886 57999999999999
Q ss_pred cCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCC
Q 023425 170 TGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNP 239 (282)
Q Consensus 170 ~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~ 239 (282)
. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.. .++..+|. ...++
T Consensus 184 ~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 184 L----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN----GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp H----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred H----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 9 89999999999999875 568999999999998 8899999999999987 46667774 47889
Q ss_pred HHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHH
Q 023425 240 VEKAKEQFEVAAQAGC--------------NLGLRWLQRIEEEE 269 (282)
Q Consensus 240 ~~~A~~~~~~Aa~~g~--------------~~a~~~l~~l~~~~ 269 (282)
+++|+.+|+++.+... +.+...++.+....
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 9999999999998763 45666677766554
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=6.8e-16 Score=136.57 Aligned_cols=196 Identities=13% Similarity=0.002 Sum_probs=158.8
Q ss_pred hcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCC
Q 023425 59 LNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVEN 136 (282)
Q Consensus 59 ~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~ 136 (282)
+......+++++|+.+|+++++.+|.++.+++.+|.+|... .++++|+.+|+++++ +.++.+++.||.+|...+
T Consensus 72 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 72 GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAEN----ENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence 33334456799999999999999999999999999999976 578999999999985 578999999999999844
Q ss_pred CCcCCHHHHHHHHHHHHHcC--C----------HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC----CHHHHHHH
Q 023425 137 DYVQSDQQAFYYIEKAVDQL--H----------PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG----HAGAAIAY 200 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~g--~----------~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g----~~~a~~~L 200 (282)
++++|+.+|+++.+.. + +.....+|.+|.. .+++++|+.+|+++++.. ++.+++++
T Consensus 148 ----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 148 ----HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD----SSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp ----CHHHHHHHHHHHHHHCHHHHCC-------------------C----CHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 5599999999998862 2 2333455888888 899999999999998853 68999999
Q ss_pred HHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHh
Q 023425 201 GSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEEK 270 (282)
Q Consensus 201 g~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~~ 270 (282)
|.+|.. .+++++|+.+|+++.+ .++.++|. ...+++++|+.+|+++.+.. ++.+...++.+.....
T Consensus 220 ~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 220 GVLFHL----SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 999998 8999999999999987 46778884 47889999999999999975 5777888888776554
No 31
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.70 E-value=9.4e-16 Score=127.22 Aligned_cols=195 Identities=20% Similarity=0.150 Sum_probs=153.3
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhc
Q 023425 57 CELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRV 134 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~ 134 (282)
..+......+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++..
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSV----NELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp --------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 3334444556799999999999999999999999999999866 577999999999985 5689999999999998
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC
Q 023425 135 ENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQV 210 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~ 210 (282)
..++++|+.+|+++.+. .++.++..+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|..
T Consensus 104 ----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 171 (243)
T 2q7f_A 104 ----KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK----LEQPKLALPYLQRAVELNENDTEARFQFGMCLAN---- 171 (243)
T ss_dssp ----TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----
T ss_pred ----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----
Confidence 44559999999999886 578999999999998 89999999999999875 568899999999998
Q ss_pred cccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHH
Q 023425 211 PECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEE 267 (282)
Q Consensus 211 ~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~ 267 (282)
.+++++|+.+++++.. ..+..+|. ...+++++|+.+|+++.+.. ++.+...++.+..
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 8889999999999987 35666773 47889999999999999876 5666666666554
No 32
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.70 E-value=4.3e-15 Score=139.60 Aligned_cols=173 Identities=14% Similarity=0.035 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|.++.+++.+|.+|... .++++|+.+|+++.+ +.++.+++.+|.+|.. ..+++
T Consensus 387 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 458 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE----GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ----LGNIL 458 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH----HTCHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCCHH
Confidence 4455555555555544455555555555554433 234555555555443 2344455555555444 22235
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc------C-C--HHHHHHHHHHHHcCCCCcc
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK------G-H--AGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------g-~--~~a~~~Lg~~y~~g~g~~~ 212 (282)
+|+.+|+++.+. .++.++..+|.+|.. .+++++|+.+|+++.+. . + +.++..+|.+|.. .+
T Consensus 459 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g 530 (597)
T 2xpi_A 459 LANEYLQSSYALFQYDPLLLNELGVVAFN----KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK----LK 530 (597)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH----hc
Confidence 555555555443 344555555555554 45555555555555442 1 1 3445555555554 44
Q ss_pred cHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 213 CLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 213 ~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
++++|..+|+++.+ ..+..+|. ...+++++|+.+|+++.+..
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 55555555555543 23333442 24445555555555555543
No 33
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.69 E-value=2.1e-15 Score=133.02 Aligned_cols=207 Identities=14% Similarity=0.017 Sum_probs=166.0
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++.+.+++...+. .....+..+..+...+++++|+.+|+++++.+|+++.+++.+|.++... .++++
T Consensus 76 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~----g~~~~ 150 (368)
T 1fch_A 76 QEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE----SLQRQ 150 (368)
T ss_dssp HTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHH
Confidence 378899999999998874432 3344455555555667899999999999999999999999999999865 34566
Q ss_pred HHHHHHHHHh---------------------------------------------------CC--CHHHHHHHHHHHhcC
Q 023425 109 GAALLVDAAN---------------------------------------------------MG--DPDAQYELGCRLRVE 135 (282)
Q Consensus 109 A~~~~~~Aa~---------------------------------------------------~g--~~~A~~~Lg~~y~~g 135 (282)
|+.+|+++++ +. ++.+++.+|.+|..
T Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~- 229 (368)
T 1fch_A 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL- 229 (368)
T ss_dssp HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH-
Confidence 6666555543 23 68899999999998
Q ss_pred CCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCc
Q 023425 136 NDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVP 211 (282)
Q Consensus 136 ~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~ 211 (282)
..++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++++|.+|.. .
T Consensus 230 ---~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~ 298 (368)
T 1fch_A 230 ---SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN----GNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN----L 298 (368)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----H
T ss_pred ---cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----C
Confidence 44559999999999986 679999999999999 89999999999999875 578999999999998 8
Q ss_pred ccHHHHHHHHHHHHHH-----------------Hchhchh--ccCCCHHHHHHHHHHHHH
Q 023425 212 ECLTKLNAKRVSAAKK-----------------ARANLES--NLMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 212 ~~~~~A~~~~~~a~~~-----------------a~~~lg~--~~~~~~~~A~~~~~~Aa~ 252 (282)
+++++|+.+|+++... ++..+|. ...+++++|..+++++.+
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 9999999999999863 2334552 366777778877776654
No 34
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.69 E-value=4.3e-16 Score=144.23 Aligned_cols=204 Identities=15% Similarity=0.079 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Q 023425 33 NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLL-KTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAA 111 (282)
Q Consensus 33 ~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~ 111 (282)
.++++..+..... .........+..+..+...+++ ++|+.+|+++++.+|+++.+++.||.+|... .++++|+.
T Consensus 84 ~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~----g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK----GDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHHHHHH
T ss_pred HHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHH
Confidence 4455554443322 1222344455555555556677 7777777777777777777777777777754 46677777
Q ss_pred HHHHHHhCC-CHHHHHHHHHHHhcC-CCCc----CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCc--------
Q 023425 112 LLVDAANMG-DPDAQYELGCRLRVE-NDYV----QSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVK-------- 175 (282)
Q Consensus 112 ~~~~Aa~~g-~~~A~~~Lg~~y~~g-~~~~----~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~-------- 175 (282)
+|++|++.. ++.++.+||.+|... .+.. .++++|+.+|+++++. .++.++++||.+|.. .
T Consensus 159 ~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~~~ 234 (474)
T 4abn_A 159 CFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS----LYFNTGQNP 234 (474)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHTTCCH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHHhhcccc
Confidence 777776432 367777777777662 1111 4457777777777765 567777777777765 4
Q ss_pred cCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchhc--cCCCHHH
Q 023425 176 KDIASALWCFHRASEK-----GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLESN--LMNPVEK 242 (282)
Q Consensus 176 ~d~~~A~~~~~~A~~~-----g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~~--~~~~~~~ 242 (282)
+++++|+.+|++|++. .++.+++++|.+|.. .+++++|+.+|+++.+ .++.+++.. ..+++++
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY----EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777663 457777777777776 6777777777777765 244445422 3345555
Q ss_pred HHHHHHH
Q 023425 243 AKEQFEV 249 (282)
Q Consensus 243 A~~~~~~ 249 (282)
|+..+.+
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 5554443
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.68 E-value=1.5e-14 Score=131.10 Aligned_cols=222 Identities=14% Similarity=0.022 Sum_probs=110.5
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.|.+++...+. .....+..+......+++++|+.+|+++++.+|.++.+++.+|.+|... .++++|
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A 113 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ----GKLDEA 113 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CCHHHH
Confidence 44555555555555442221 1222222333333334455555555555555555555555555555543 344555
Q ss_pred HHHHHHHHh---------------------------------------------------CCCHHHHHHHHHHHhcCCCC
Q 023425 110 AALLVDAAN---------------------------------------------------MGDPDAQYELGCRLRVENDY 138 (282)
Q Consensus 110 ~~~~~~Aa~---------------------------------------------------~g~~~A~~~Lg~~y~~g~~~ 138 (282)
+.+|+++++ +.++.+++.+|.+|...+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (450)
T 2y4t_A 114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP 193 (450)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCH
Confidence 555555543 23444455555555442222
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHH------------HH
Q 023425 139 VQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAY------------GS 202 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~L------------g~ 202 (282)
++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|++++.. .++.+...+ |.
T Consensus 194 ----~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 194 ----RKAISDLKAASKLKNDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 265 (450)
T ss_dssp ----GGGHHHHHHHHHHHCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555443 445555555555555 55555555555555443 233333322 55
Q ss_pred HHHcCCCCcccHHHHHHHHHHHHHH----------Hchhch--hccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Q 023425 203 LLLRGVQVPECLTKLNAKRVSAAKK----------ARANLE--SNLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEE 268 (282)
Q Consensus 203 ~y~~g~g~~~~~~~A~~~~~~a~~~----------a~~~lg--~~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~ 268 (282)
++.. .+++++|+.+|+++... .+.++| ....+++++|+.+|+++.+.. ++.+...++.+...
T Consensus 266 ~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 341 (450)
T 2y4t_A 266 ELIR----DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI 341 (450)
T ss_dssp HHHH----HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHH----cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 5554 45555555555555441 233344 235566677777777766543 44555555555543
No 36
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.68 E-value=8.6e-15 Score=135.52 Aligned_cols=209 Identities=13% Similarity=0.069 Sum_probs=174.8
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++.+.+++...+. ....+..+......+++++|+.+|+++++.+|.++.+++.+|.++... .++++
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 328 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL----QDYKN 328 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHH
T ss_pred hcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc----CCHHH
Confidence 367889999999998875544 455566666777788999999999999999999999999999999866 57799
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
|+.+|+++++ +.++.+++.+|.++... .++++|+.+|+++.+. .++.++..+|.+|.. .+++++|+.+
T Consensus 329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 400 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQ----GKFTESEAFFNETKLKFPTLPEVPTFFAEILTD----RGDFDTAIKQ 400 (537)
T ss_dssp HHHHHHHHHHHCTTCSHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHH
Confidence 9999999985 56789999999999984 4559999999999887 678899999999998 8999999999
Q ss_pred HHHHHHcC--------CHHHHHHHHHHHHcCCCCc----------ccHHHHHHHHHHHHH------HHchhchh--ccCC
Q 023425 185 FHRASEKG--------HAGAAIAYGSLLLRGVQVP----------ECLTKLNAKRVSAAK------KARANLES--NLMN 238 (282)
Q Consensus 185 ~~~A~~~g--------~~~a~~~Lg~~y~~g~g~~----------~~~~~A~~~~~~a~~------~a~~~lg~--~~~~ 238 (282)
|+++++.. .....+.+|.+|.. . +++++|+.+|+++.. .++..+|. ...+
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILAR----QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHH----HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHH----HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 99997753 12346677788876 5 899999999999987 46777874 4788
Q ss_pred CHHHHHHHHHHHHHhcc
Q 023425 239 PVEKAKEQFEVAAQAGC 255 (282)
Q Consensus 239 ~~~~A~~~~~~Aa~~g~ 255 (282)
++++|+.+|+++.+...
T Consensus 477 ~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 477 KIDEAIELFEDSAILAR 493 (537)
T ss_dssp CHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHhCC
Confidence 99999999999999863
No 37
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.68 E-value=7.7e-16 Score=149.25 Aligned_cols=159 Identities=17% Similarity=0.137 Sum_probs=142.6
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C
Q 023425 81 ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L 156 (282)
Q Consensus 81 ~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g 156 (282)
..|++++++++||.+|... .++++|+.+|++|++ ++++.++++||.+|...+ ++++|+.+|++|++. +
T Consensus 4 s~P~~a~al~nLG~~~~~~----G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g----~~~eA~~~~~~Al~l~P~ 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQ----GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG----KLQEALMHYKEAIRISPT 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHCTT
T ss_pred CCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCC
Confidence 4689999999999999976 577999999999985 689999999999999954 459999999999987 7
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HH
Q 023425 157 HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KA 228 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a 228 (282)
++.++++||.+|.. .+++++|+++|++|++. +++.++++||.+|.. .+++++|+.+|++|++ .+
T Consensus 76 ~~~a~~nLg~~l~~----~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~a 147 (723)
T 4gyw_A 76 FADAYSNMGNTLKE----MQDVQGALQCYTRAIQINPAFADAHSNLASIHKD----SGNIPEAIASYRTALKLKPDFPDA 147 (723)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHH
Confidence 89999999999999 99999999999999875 679999999999999 8999999999999998 58
Q ss_pred chhchh--ccCCCHHHHHHHHHHHHHhcc
Q 023425 229 RANLES--NLMNPVEKAKEQFEVAAQAGC 255 (282)
Q Consensus 229 ~~~lg~--~~~~~~~~A~~~~~~Aa~~g~ 255 (282)
+.++|. ...+++++|.++|+++.+...
T Consensus 148 ~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 148 YCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 889984 478899999999999988653
No 38
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.67 E-value=6.4e-15 Score=122.08 Aligned_cols=182 Identities=13% Similarity=0.038 Sum_probs=143.8
Q ss_pred hhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCC
Q 023425 65 IPLLKTAKENFELALEADN-SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQS 141 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~-g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d 141 (282)
.+++++|+.+|+++++.+| .++.+++++|.++... .++++|+.+|+++++ +.++.+++.+|.+|.. ..+
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~ 91 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI----KKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD----MKN 91 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH----TTC
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh----hcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH----ccc
Confidence 4569999999999999998 9999999999999976 678999999999985 5689999999999999 455
Q ss_pred HHHHHHHHHHHHHc--CCH-------HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCC
Q 023425 142 DQQAFYYIEKAVDQ--LHP-------GALYLLGTVYLTGDCVKKDIASALWCFHRASEKG----HAGAAIAYGSLLLRGV 208 (282)
Q Consensus 142 ~~~A~~~~~kAa~~--g~~-------~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g----~~~a~~~Lg~~y~~g~ 208 (282)
+++|+.+|+++++. .++ .+++.+|.++.. .+++++|+.+|+++++.. ++.+++++|.+|..
T Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-- 165 (228)
T 4i17_A 92 NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN-- 165 (228)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH--
Confidence 59999999999986 566 679999999999 899999999999998865 45889999999975
Q ss_pred CCcccHHHHHHHHHHHHHHH------chhchhccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHH
Q 023425 209 QVPECLTKLNAKRVSAAKKA------RANLESNLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEE 267 (282)
Q Consensus 209 g~~~~~~~A~~~~~~a~~~a------~~~lg~~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~ 267 (282)
.+. ..+.++.... +........+++++|+.+|++|.+.. ++.+...|+.+..
T Consensus 166 --~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 166 --NGA-----DVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp --HHH-----HHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred --HHH-----HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 222 2222222110 00111223445789999999999976 5667777777654
No 39
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.67 E-value=2.1e-14 Score=132.87 Aligned_cols=198 Identities=15% Similarity=0.005 Sum_probs=164.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCH-HHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCC
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACK-AMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQS 141 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~-~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d 141 (282)
...+++++..++......|.++.+++.+|.++... .++ ++|+.+|++|++ ++++++++.||.+|.. ..+
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~----g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~ 152 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVT----PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK----KGD 152 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSS----SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTC
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhc----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCC
Confidence 35588899999999988999999999999999865 678 999999999974 6789999999999998 455
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHhc-CCCCc----cCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcC----CC
Q 023425 142 DQQAFYYIEKAVDQ-LHPGALYLLGTVYLT-GDCVK----KDIASALWCFHRASEK--GHAGAAIAYGSLLLRG----VQ 209 (282)
Q Consensus 142 ~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~-g~g~~----~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g----~g 209 (282)
+++|+.+|+++++. .++.++.+||.+|.. +.+.. +++++|+.+|++|++. .++.++++||.+|..- ..
T Consensus 153 ~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 153 VTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 69999999999987 358999999999998 11111 9999999999999875 5799999999999861 00
Q ss_pred CcccHHHHHHHHHHHHHH---------Hchhchh--ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHh
Q 023425 210 VPECLTKLNAKRVSAAKK---------ARANLES--NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEEK 270 (282)
Q Consensus 210 ~~~~~~~A~~~~~~a~~~---------a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~~ 270 (282)
..+++++|+.+|+++... +++++|. ...+++++|+.+|++|.+.. ++.+...++.+.....
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 128899999999999872 4567774 47889999999999999876 6667777777766543
No 40
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.67 E-value=2e-14 Score=135.10 Aligned_cols=223 Identities=9% Similarity=-0.104 Sum_probs=182.1
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++++.+.+...+. ........+......+++++|+..|+++++..|.++.+++.||.+|... .++++|
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A 392 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV----NKISEA 392 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT----TCHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh----ccHHHH
Confidence 67899999999887753321 1111112222223456799999999999999999999999999999976 577999
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
+.+|+++.+ +.++.+++.+|.+|.. ..++++|+.+|+++.+. .++.++..+|.+|.. .+++++|+.+|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 464 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFGPAWIGFAHSFAI----EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ----LGNILLANEYL 464 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH----HTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 999999975 5789999999999998 45559999999999887 578999999999999 89999999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH-------------Hchhch--hccCCCHHHHHHHHH
Q 023425 186 HRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK-------------ARANLE--SNLMNPVEKAKEQFE 248 (282)
Q Consensus 186 ~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------a~~~lg--~~~~~~~~~A~~~~~ 248 (282)
+++.+. .++.++..+|.+|.. .+++++|+.+|+++.+. .+..+| ....+++++|+.+|+
T Consensus 465 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 465 QSSYALFQYDPLLLNELGVVAFN----KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999774 578999999999998 88999999999999763 345566 347899999999999
Q ss_pred HHHHhc--cHHHHHHHHHHHHHH
Q 023425 249 VAAQAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 249 ~Aa~~g--~~~a~~~l~~l~~~~ 269 (282)
++.+.+ ++.+...++.+....
T Consensus 541 ~~~~~~p~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 541 QGLLLSTNDANVHTAIALVYLHK 563 (597)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCCChHHHHHHHHHHHHh
Confidence 999976 567777787776654
No 41
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=2.6e-15 Score=137.19 Aligned_cols=215 Identities=14% Similarity=0.060 Sum_probs=157.2
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcC---CCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHH
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELND---RRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~ 107 (282)
+++++|++.|.+++...+... ......+.. .+..++.++|+..|++|++.+|.++.++..+|..+........+.+
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~-~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNP-EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCH-HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------C
T ss_pred ccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHH
Confidence 468899999999887544321 111111111 1122445778899999999999999999999988776655556778
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC-----------
Q 023425 108 MGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGD----------- 172 (282)
Q Consensus 108 ~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~----------- 172 (282)
+|+.+|+++.+ +.++.++.++|.+|...+ ++++|+.+|++|.+. .++.++++||.+|..-.
T Consensus 231 ~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKD----EPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHcC----chHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999874 578999999999999844 449999999999886 68899999998885310
Q ss_pred ----CCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH---------HHchhchh---
Q 023425 173 ----CVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK---------KARANLES--- 234 (282)
Q Consensus 173 ----g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------~a~~~lg~--- 234 (282)
.....+++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.. ..++.+|.
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL----ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH----TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH----hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 0134467888888888775 457788999999998 8899999999999986 23445553
Q ss_pred ccCCCHHHHHHHHHHHHHhc
Q 023425 235 NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 235 ~~~~~~~~A~~~~~~Aa~~g 254 (282)
...+++++|+.+|++|.+..
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSC
T ss_pred HHCCCHHHHHHHHHHHHhcC
Confidence 36789999999999998764
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=1.1e-14 Score=121.73 Aligned_cols=175 Identities=15% Similarity=0.028 Sum_probs=153.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|+++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.+|.. ..+++
T Consensus 51 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~ 122 (252)
T 2ho1_A 51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTE----MEPKLADEEYRKALASDSRNARVLNNYGGFLYE----QKRYE 122 (252)
T ss_dssp TCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHH
T ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH----HhHHH
Confidence 4589999999999999999999999999999976 578999999999985 5689999999999998 44559
Q ss_pred HHHHHHHHHHH--c--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHH
Q 023425 144 QAFYYIEKAVD--Q--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 144 ~A~~~~~kAa~--~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
+|+.+|+++.. . .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|
T Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A 194 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQ----MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK----EREYVPA 194 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHhCccCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHH
Confidence 99999999988 3 568899999999999 89999999999999875 468999999999998 8999999
Q ss_pred HHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhccH
Q 023425 218 NAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 218 ~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g~~ 256 (282)
..+++++.. ..+..++. ...+++++|..+++++.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 999999986 34445553 3788999999999999987743
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=4.1e-15 Score=125.78 Aligned_cols=181 Identities=10% Similarity=-0.057 Sum_probs=152.4
Q ss_pred cccchHHHHHHHHHHhhhhh--HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCH
Q 023425 29 LHSRNKKAMELIAKGWSALK--EVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACK 106 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~ 106 (282)
..+++++|++.+.+++.... ......++..+..+...+++++|+.+|+++++.+|.++.++..+|.+|... .++
T Consensus 49 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~----~~~ 124 (272)
T 3u4t_A 49 ELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK----GNF 124 (272)
T ss_dssp HTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT----TCH
T ss_pred HHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc----cCH
Confidence 37889999999999988221 222223455555555567899999999999999999999999999999976 678
Q ss_pred HHHHHHHHHHHh--CCCHHHHHHHH-HHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccC---H
Q 023425 107 AMGAALLVDAAN--MGDPDAQYELG-CRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKD---I 178 (282)
Q Consensus 107 ~~A~~~~~~Aa~--~g~~~A~~~Lg-~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d---~ 178 (282)
++|+.+|+++++ +.++.+++++| .+|..+ ++++|+.+|+++++. .++.+++.+|.++.. .++ +
T Consensus 125 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~----~~~~~~~ 195 (272)
T 3u4t_A 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-----EYVKADSSFVKVLELKPNIYIGYLWRARANAA----QDPDTKQ 195 (272)
T ss_dssp HHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HSTTCSS
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCcchhh
Confidence 999999999985 67899999999 777764 779999999999987 678999999999987 555 8
Q ss_pred HHHHHHHHHHHHcC----C------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 179 ASALWCFHRASEKG----H------AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 179 ~~A~~~~~~A~~~g----~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
++|+.+|+++++.. + ..++..||.+|.. .+++++|+.+|+++.+
T Consensus 196 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 196 GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI----NRDKVKADAAWKNILA 249 (272)
T ss_dssp CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 88999999998752 2 3689999999998 8999999999999987
No 44
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.65 E-value=1.8e-14 Score=133.39 Aligned_cols=224 Identities=11% Similarity=-0.002 Sum_probs=182.3
Q ss_pred ccchHHHHHHHHHHhhhhhHHH------HHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCC
Q 023425 30 HSRNKKAMELIAKGWSALKEVD------RVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPG 103 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~ 103 (282)
.+++++|++.+.+.+...+... ....+..+......+++++|+.+|+++++.+|. +.+++.+|.++...
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~---- 289 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADK---- 289 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCS----
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHh----
Confidence 4578899998888877444321 223444444555567899999999999999998 99999999999865
Q ss_pred cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHH
Q 023425 104 ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIA 179 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~ 179 (282)
.++++|+.+|+++++ +.++.+++.+|.++.. ..++++|+.+|+++.+. .++.+++.+|.+|.. .++++
T Consensus 290 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~ 361 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI----LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFT 361 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHH
T ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Confidence 566999999999985 5789999999999998 45559999999999987 678999999999999 89999
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------Hchhc------hh--ccC------
Q 023425 180 SALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------ARANL------ES--NLM------ 237 (282)
Q Consensus 180 ~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------a~~~l------g~--~~~------ 237 (282)
+|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++... .+..+ |. ...
T Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 362 ESEAFFNETKLKFPTLPEVPTFFAEILTD----RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence 999999999876 568899999999998 89999999999999873 22222 21 133
Q ss_pred ----CCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHh
Q 023425 238 ----NPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEEK 270 (282)
Q Consensus 238 ----~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~~ 270 (282)
+++++|+.+|+++.+.. ++.+...++.+.....
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 89999999999999876 5677888888776543
No 45
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=8.8e-15 Score=131.20 Aligned_cols=49 Identities=8% Similarity=-0.139 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Q 023425 65 IPLLKTAKENFELALEA------DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA 117 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~------~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa 117 (282)
.+++++|+.+|+++++. ++..+.+++.+|.+|... .++++|+.+|++++
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al 153 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM----GRFDEAAICCERHL 153 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 34455555555555443 333444455555554433 23455555555443
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=2e-14 Score=121.44 Aligned_cols=209 Identities=12% Similarity=-0.011 Sum_probs=166.5
Q ss_pred ccchHHHHHHHHHHhhhh---hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCH
Q 023425 30 HSRNKKAMELIAKGWSAL---KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACK 106 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~ 106 (282)
.+++++|++.+.+++... .+......+..+..+...+++++|+.+|+++++.+|.++.+++.+|.+|... .++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----~~~ 93 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA----GNF 93 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT----TCH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc----cCH
Confidence 477999999999988752 2344555666666666778899999999999999999999999999999976 578
Q ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 023425 107 AMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASAL 182 (282)
Q Consensus 107 ~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~ 182 (282)
++|+.+|+++++ +.++.+++.+|.+|.. ..++++|+.+|+++.+. .++.....++.++. .+++++|+
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~A~ 164 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-----KLDEKQAK 164 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HHCHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----hcCHHHHH
Confidence 999999999986 5789999999999998 45559999999999987 56666666665543 58999999
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH----------HHchhchh--ccCCCHHHHHHHHHH
Q 023425 183 WCFHRASEKGH-AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----------KARANLES--NLMNPVEKAKEQFEV 249 (282)
Q Consensus 183 ~~~~~A~~~g~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----------~a~~~lg~--~~~~~~~~A~~~~~~ 249 (282)
.+|++++.... ....+.++.++.. ..+.++|+..++++.. ..+..+|. ...+++++|+.+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 165 EVLKQHFEKSDKEQWGWNIVEFYLG----NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHHHHHHHHSCCCSTHHHHHHHHTT----SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHH----hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999887532 2223446666665 5566888888888753 45667774 478899999999999
Q ss_pred HHHhcc
Q 023425 250 AAQAGC 255 (282)
Q Consensus 250 Aa~~g~ 255 (282)
+.+..+
T Consensus 241 al~~~p 246 (275)
T 1xnf_A 241 AVANNV 246 (275)
T ss_dssp HHTTCC
T ss_pred HHhCCc
Confidence 999874
No 47
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.9e-14 Score=132.10 Aligned_cols=223 Identities=13% Similarity=0.009 Sum_probs=157.9
Q ss_pred ccchHHHHHHHHHHhhhh-------------hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSAL-------------KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLH 96 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~ 96 (282)
.+++++|++.+.+++... ........+..+......+++++|+.+|+++++.+|. +.+++.+|.++
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~ 280 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIM 280 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHH
Confidence 577888888888877621 1233344445555555567788899999998888888 88888888888
Q ss_pred hcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC
Q 023425 97 LKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGD 172 (282)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~ 172 (282)
... .++++|+.+|+++++ +.++.++..+|.++...+.. ++|+.+|+++.+. .++.++..+|.+|..
T Consensus 281 ~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 350 (514)
T 2gw1_A 281 ADR----NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY----DQAGKDFDKAKELDPENIFPYIQLACLAYR-- 350 (514)
T ss_dssp HTS----SCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT----THHHHHHHHHHHTCSSCSHHHHHHHHHTTT--
T ss_pred HHC----CCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHhChhhHHHHHHHHHHHHH--
Confidence 865 344778888888875 35777888888888774444 7888888888765 467777888888777
Q ss_pred CCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------------Hchhchhc--c
Q 023425 173 CVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------------ARANLESN--L 236 (282)
Q Consensus 173 g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------a~~~lg~~--~ 236 (282)
.+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++... +++.+|.. .
T Consensus 351 --~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 351 --ENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD----KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp --TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred --cCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 77788888888887664 456777778877777 67777777777777651 45555532 4
Q ss_pred ---CCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Q 023425 237 ---MNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 237 ---~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~ 269 (282)
.+++++|+.+|+++.+.. ++.+...++.+....
T Consensus 425 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 425 NPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 667777777777777654 455555666655543
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=8.4e-15 Score=121.45 Aligned_cols=181 Identities=23% Similarity=0.185 Sum_probs=150.3
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++++.+++...+. .....+..+......+++++|+.+|+++++.+|.++.+++.+|.++... .++++
T Consensus 35 ~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~ 109 (243)
T 2q7f_A 35 EFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK----EMYKE 109 (243)
T ss_dssp -------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHH
T ss_pred HhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh----ccHHH
Confidence 467789999999988774332 2344444444455567899999999999999999999999999999966 57899
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
|+.+|+++.+ +.++.+++.+|.++.. ..++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+
T Consensus 110 A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 181 (243)
T 2q7f_A 110 AKDMFEKALRAGMENGDLFYMLGTVLVK----LEQPKLALPYLQRAVELNENDTEARFQFGMCLAN----EGMLDEALSQ 181 (243)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 9999999985 4689999999999998 45569999999999986 689999999999999 9999999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 185 FHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 185 ~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
|+++++. .++.+++.+|.+|.. .+++++|..+|+++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAY----KENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH----TTCTTHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHc
Confidence 9999876 568999999999998 8899999999999987
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=9.3e-15 Score=131.04 Aligned_cols=217 Identities=14% Similarity=0.004 Sum_probs=143.8
Q ss_pred ccchHHHHHHHHHHhhhh-----hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHhc
Q 023425 30 HSRNKKAMELIAKGWSAL-----KEVDRVIDYCELNDRRLIPLLKTAKENFELALEA------DNSNTHARYWLSKLHLK 98 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~g~~~a~~~Lg~~~~~ 98 (282)
.+++++|++++.+++... ........+..+..+...+++++|+.+|+++++. .+..+.+++.+|.+|..
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 566777777777766542 2233344555555555667777777777777775 45556677777777776
Q ss_pred CCCCCcC-----------------HHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHH
Q 023425 99 YHVPGAC-----------------KAMGAALLVDAANM----G----DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAV 153 (282)
Q Consensus 99 ~~~~~~~-----------------~~~A~~~~~~Aa~~----g----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa 153 (282)
. .+ +++|+.+|+++.+. + ...++.++|.+|.. ..++++|+.+|+++.
T Consensus 179 ~----g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 179 K----GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYL----LGDFQAAIEHHQERL 250 (411)
T ss_dssp H----HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred c----CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHH
Confidence 5 45 67777777777542 2 24577777777777 344477777777777
Q ss_pred Hc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC----C----HHHHHHHHHHHHcCCCCcccHHHH
Q 023425 154 DQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG----H----AGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 154 ~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g----~----~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
+. ++ ..+++.+|.+|.. .+++++|+.+|+++++.. + ..++..+|.+|.. .+++++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A 322 (411)
T 4a1s_A 251 RIAREFGDRAAERRANSNLGNSHIF----LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL----LHEFNTA 322 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCCHHHH
Confidence 64 22 2367777777777 777777777777776532 1 5567777777776 6777777
Q ss_pred HHHHHHHHHH------------Hchhchh--ccCCCHHHHHHHHHHHHHhccHHHHHHH
Q 023425 218 NAKRVSAAKK------------ARANLES--NLMNPVEKAKEQFEVAAQAGCNLGLRWL 262 (282)
Q Consensus 218 ~~~~~~a~~~------------a~~~lg~--~~~~~~~~A~~~~~~Aa~~g~~~a~~~l 262 (282)
..+++++... ++..+|. ...+++++|+.+|++|.+.-........
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 381 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXXXXX 381 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 7777777652 4445553 3667777788877777777776654443
No 50
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.2e-14 Score=131.73 Aligned_cols=83 Identities=13% Similarity=-0.096 Sum_probs=61.4
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.|.+++...+ .....+..+..+...+++++|+.+|+++++.+|+++.+++.+|.+|... .++++|
T Consensus 19 ~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A 92 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELKE--DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL----GKFADA 92 (514)
T ss_dssp TSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred hccHHHHHHHHHHHHhcCc--cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH----hhHHHH
Confidence 4668999999998887554 2344555555555667899999999999999999999999999988765 345666
Q ss_pred HHHHHHHHh
Q 023425 110 AALLVDAAN 118 (282)
Q Consensus 110 ~~~~~~Aa~ 118 (282)
+..|+++.+
T Consensus 93 ~~~~~~~~~ 101 (514)
T 2gw1_A 93 MFDLSVLSL 101 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666544
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=2.5e-14 Score=119.66 Aligned_cols=181 Identities=13% Similarity=0.013 Sum_probs=154.4
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++++.+++...+. .....+..+......+++++|+.+|+++++.+|.++.+++.+|.++... .++++
T Consensus 49 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~ 123 (252)
T 2ho1_A 49 QRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ----KRYEE 123 (252)
T ss_dssp HTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHH
T ss_pred HcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH----hHHHH
Confidence 367789999999998774332 2334444444455567899999999999999999999999999999875 57899
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 023425 109 GAALLVDAAN----MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASAL 182 (282)
Q Consensus 109 A~~~~~~Aa~----~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~ 182 (282)
|+.+|+++++ +.++.+++.+|.++... .++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 195 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQM----KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK----EREYVPAR 195 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHH
Confidence 9999999987 45788999999999984 4559999999999986 579999999999999 89999999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 183 WCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 183 ~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+|+++++. .++.++..++.+|.. .+++++|..+++++.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKV----FEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHH
Confidence 999999875 578899999999998 7899999999999876
No 52
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.63 E-value=1.5e-14 Score=129.36 Aligned_cols=213 Identities=14% Similarity=0.058 Sum_probs=146.0
Q ss_pred cccchHHHHHHHHHHhhhhh-----HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHH
Q 023425 29 LHSRNKKAMELIAKGWSALK-----EVDRVIDYCELNDRRLIPLLKTAKENFELALEA-------DNSNTHARYWLSKLH 96 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~g~~~a~~~Lg~~~ 96 (282)
..+++++|++++.+++.... .......+..+..+...+++++|+.+|++|++. .++.+.++++||.+|
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 35778888888888876422 223345555555555667788888888888875 233345788888888
Q ss_pred hcCCCCCcCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH--------cCCHHH
Q 023425 97 LKYHVPGACKAMGAALLVDAANM----GD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD--------QLHPGA 160 (282)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~Aa~~----g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~--------~g~~~A 160 (282)
... +++++|+.+|++|++. ++ ..++++||.+|.. ..++++|+.+|++|.+ ...+.+
T Consensus 195 ~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 195 LDL----KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHh----cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 865 5678888888888742 32 2478888888887 4445888888888887 234677
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CCHH---HHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-----HH
Q 023425 161 LYLLGTVYLTGDCVKKDIASALWCFHRASEK----GHAG---AAIAYGSLLLRGVQVPECLTKLNAKRVSAAK-----KA 228 (282)
Q Consensus 161 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~~~---a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-----~a 228 (282)
+++||.+|.. .+++++|+.+|++|++. +++. .+..||.+|...... ..+++|+.++++... ..
T Consensus 267 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 267 YFLITQIHYK----LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE-EAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH-HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHCcCHHHHHHH
Confidence 8888888888 78888888888888664 2322 246678877762111 226777777776532 34
Q ss_pred chhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 229 RANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 229 ~~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
+..+|. ...+++++|..+|++|.+..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 556663 37778888888888887643
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=1.7e-13 Score=111.79 Aligned_cols=175 Identities=12% Similarity=-0.019 Sum_probs=146.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++... ..++
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~ 93 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYL----KVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR---LNRP 93 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT---TCCH
T ss_pred HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh---cCcH
Confidence 35699999999999999999999999999999865 577999999999975 56899999999999884 0455
Q ss_pred HHHHHHHHHHHH--c--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHH
Q 023425 143 QQAFYYIEKAVD--Q--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTK 216 (282)
Q Consensus 143 ~~A~~~~~kAa~--~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~ 216 (282)
++|+.+|+++.+ . .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~ 165 (225)
T 2vq2_A 94 AESMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML----AGQLGD 165 (225)
T ss_dssp HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHH
T ss_pred HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----cCCHHH
Confidence 999999999998 3 347899999999998 89999999999999875 568899999999998 889999
Q ss_pred HHHHHHHHHHHHc-------hhch--hccCCCHHHHHHHHHHHHHhc
Q 023425 217 LNAKRVSAAKKAR-------ANLE--SNLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 217 A~~~~~~a~~~a~-------~~lg--~~~~~~~~~A~~~~~~Aa~~g 254 (282)
|..+++++....- ..++ ....++.+.|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999987432 1222 236778889999888887654
No 54
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.9e-14 Score=131.42 Aligned_cols=220 Identities=17% Similarity=0.060 Sum_probs=165.0
Q ss_pred ccchHHHHHHHHHHhhhhhHH-------HHHHHHHhhcCC--CchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCC
Q 023425 30 HSRNKKAMELIAKGWSALKEV-------DRVIDYCELNDR--RLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYH 100 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~ 100 (282)
.+++++|++++.+++...... ....+...+... ...+++++|+.+|++|++.+|+++++++.+|.++...+
T Consensus 107 ~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~ 186 (472)
T 4g1t_A 107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD 186 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 688999999999987643311 111111111110 11357999999999999999999999999999865321
Q ss_pred CCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCcc
Q 023425 101 VPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKK 176 (282)
Q Consensus 101 ~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~ 176 (282)
.. .+.++|+..|++|++ +.++.++.++|..+..-.....+.++|+.+|+++... .++.++.++|.+|.. .+
T Consensus 187 ~~-~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~----~~ 261 (472)
T 4g1t_A 187 NW-PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR----KD 261 (472)
T ss_dssp HS-CCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----TT
T ss_pred Cc-hHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH----cC
Confidence 11 344778999999975 6789999999988776555566779999999999886 689999999999999 99
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC---------------CCcccHHHHHHHHHHHHH------HHchhch
Q 023425 177 DIASALWCFHRASEK--GHAGAAIAYGSLLLRGV---------------QVPECLTKLNAKRVSAAK------KARANLE 233 (282)
Q Consensus 177 d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~---------------g~~~~~~~A~~~~~~a~~------~a~~~lg 233 (282)
++++|+.+|++|++. .++.++++||.+|.... .....++.|+.+|+++.. .++.++|
T Consensus 262 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg 341 (472)
T 4g1t_A 262 EPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILA 341 (472)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHH
T ss_pred chHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHH
Confidence 999999999999875 57899999999986310 012346778888888887 3566777
Q ss_pred h--ccCCCHHHHHHHHHHHHHhc
Q 023425 234 S--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 234 ~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
. ...+++++|+.+|++|.+..
T Consensus 342 ~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 342 SLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHhccHHHHHHHHHHHHhcC
Confidence 4 47889999999999999865
No 55
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.62 E-value=2.9e-14 Score=123.37 Aligned_cols=233 Identities=12% Similarity=0.023 Sum_probs=169.8
Q ss_pred hhhhhhHHhhhhhhhcchhhhhhc----ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc
Q 023425 6 SKASTLKSAALGLLQSNQHQKRWL----HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEA 81 (282)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 81 (282)
..|..++..+.-++.+........ .+++++|++.|.++.. .+.. .+++++|+.+|++|++.
T Consensus 2 ~~a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--------~~~~-------~g~~~~A~~~~~~al~~ 66 (292)
T 1qqe_A 2 SDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAAT--------IYRL-------RKELNLAGDSFLKAADY 66 (292)
T ss_dssp CCHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHH--------HHHH-------TTCTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHHHH--------HHHH-------cCCHHHHHHHHHHHHHH
Confidence 345666666666655432221222 2359999999988733 2222 24599999999999986
Q ss_pred CC--C----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh----CCC----HHHHHHHHHHHhcCCCCcCCHHHHHH
Q 023425 82 DN--S----NTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN----MGD----PDAQYELGCRLRVENDYVQSDQQAFY 147 (282)
Q Consensus 82 ~~--g----~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~ 147 (282)
.+ + .+.++.++|.+|... .++++|+.+|++|++ .|+ +.++.++|.+|... ..++++|+.
T Consensus 67 ~~~~~~~~~~a~~~~~lg~~~~~~----g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~---lg~~~~A~~ 139 (292)
T 1qqe_A 67 QKKAGNEDEAGNTYVEAYKCFKSG----GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND---LHDYAKAID 139 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---hcCHHHHHH
Confidence 32 2 267899999999876 578999999999985 355 46899999999983 044599999
Q ss_pred HHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHcCCCC
Q 023425 148 YIEKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--H-------AGAAIAYGSLLLRGVQV 210 (282)
Q Consensus 148 ~~~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~-------~~a~~~Lg~~y~~g~g~ 210 (282)
+|++|++. ++ ..++.++|.+|.. .+++++|+.+|+++++.. + ..+++++|.+|..
T Consensus 140 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~---- 211 (292)
T 1qqe_A 140 CYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA---- 211 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH----
Confidence 99999985 22 5678999999999 899999999999998853 2 2368999999998
Q ss_pred cccHHHHHHHHHHHHHH-----------Hchhchh----ccCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 023425 211 PECLTKLNAKRVSAAKK-----------ARANLES----NLMNPVEKAKEQFEVAAQAGCNLGLRWLQRIEEEE 269 (282)
Q Consensus 211 ~~~~~~A~~~~~~a~~~-----------a~~~lg~----~~~~~~~~A~~~~~~Aa~~g~~~a~~~l~~l~~~~ 269 (282)
.++++.|+.+|+++... ....++. ...+++.+|+..|+++....+.. ...+-++++..
T Consensus 212 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~-~~~~~~~k~~~ 284 (292)
T 1qqe_A 212 ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK-ITILNKIKESI 284 (292)
T ss_dssp TTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH-HHHHHHHHHHh
Confidence 89999999999998751 1112331 24567999999999987765443 45555555544
No 56
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.3e-13 Score=114.91 Aligned_cols=183 Identities=10% Similarity=0.017 Sum_probs=153.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CC-------HHHHHHHHHHHhcC
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GD-------PDAQYELGCRLRVE 135 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~-------~~A~~~Lg~~y~~g 135 (282)
.+++++|+.+|+++++.+ .++.+++.+|.++... .++++|+.+|+++++. .+ +.+++.+|.+|..
T Consensus 18 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~- 91 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEK----GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK- 91 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-
T ss_pred hccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH-
Confidence 356999999999999998 9999999999999976 5789999999999863 23 7899999999998
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCccc
Q 023425 136 NDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPEC 213 (282)
Q Consensus 136 ~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~ 213 (282)
..++++|+.+|+++...... +.++.. .+++++|+.+++++.... ++.+++.+|.+|.. .++
T Consensus 92 ---~~~~~~A~~~~~~a~~~~~~------~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 154 (258)
T 3uq3_A 92 ---LGDLKKTIEYYQKSLTEHRT------ADILTK----LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT----KSD 154 (258)
T ss_dssp ---TTCHHHHHHHHHHHHHHCCC------HHHHHH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----TTC
T ss_pred ---cccHHHHHHHHHHHHhcCch------hHHHHH----HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH----hcC
Confidence 45559999999999987322 344555 677899999999998874 57789999999998 899
Q ss_pred HHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHh
Q 023425 214 LTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEEK 270 (282)
Q Consensus 214 ~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~~ 270 (282)
+++|+.+|+++.. ..+.++|. ...+++++|+.+|+++.+.. ++.+...++.+.....
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 9999999999987 46667774 47889999999999999876 5667777777766543
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=7.4e-14 Score=124.19 Aligned_cols=227 Identities=12% Similarity=-0.002 Sum_probs=165.1
Q ss_pred ccchHHHHHHHHHHhhhhh-----HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHhc
Q 023425 30 HSRNKKAMELIAKGWSALK-----EVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN------THARYWLSKLHLK 98 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~------~~a~~~Lg~~~~~ 98 (282)
.+++++|++++.+++.... .......+..+..+...+++++|+.+|+++++..+.. +.+++.+|.+|..
T Consensus 60 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 60 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 6788889888888766432 2223344445555555677899999999988754332 4488888888875
Q ss_pred CCCCCcC--------------------HHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHH
Q 023425 99 YHVPGAC--------------------KAMGAALLVDAANM----G----DPDAQYELGCRLRVENDYVQSDQQAFYYIE 150 (282)
Q Consensus 99 ~~~~~~~--------------------~~~A~~~~~~Aa~~----g----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~ 150 (282)
. .+ +++|+.+|+++++. + .+.++.++|.+|.. ..++++|+.+|+
T Consensus 140 ~----g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~ 211 (406)
T 3sf4_A 140 K----GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHE 211 (406)
T ss_dssp H----HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHH
T ss_pred c----CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHH
Confidence 4 34 68888888888642 2 24578888988888 445599999999
Q ss_pred HHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcccH
Q 023425 151 KAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPECL 214 (282)
Q Consensus 151 kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~~ 214 (282)
++.+. ++ +.++.++|.+|.. .+++++|+.+|+++++. ++ +.++.++|.+|.. .+++
T Consensus 212 ~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~ 283 (406)
T 3sf4_A 212 QRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL----LQDY 283 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH----hCcH
Confidence 98864 32 3488889999988 89999999999998753 22 6678899999988 7889
Q ss_pred HHHHHHHHHHHHH------------Hchhchh--ccCCCHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhc
Q 023425 215 TKLNAKRVSAAKK------------ARANLES--NLMNPVEKAKEQFEVAAQAG--------CNLGLRWLQRIEEEEKRL 272 (282)
Q Consensus 215 ~~A~~~~~~a~~~------------a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--------~~~a~~~l~~l~~~~~~~ 272 (282)
++|..+|+++... ++..+|. ...+++++|+.+|++|.+.. ...+...++.+.....+.
T Consensus 284 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9999999998762 4445663 36789999999999998763 244666677776655433
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=2e-13 Score=111.42 Aligned_cols=182 Identities=11% Similarity=-0.003 Sum_probs=150.9
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++++.+++...+. .....+..+..+...+++++|+.+|+++++.+|.++.+++.+|.++... ..++++
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~~~ 95 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR---LNRPAE 95 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT---TCCHHH
T ss_pred HHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh---cCcHHH
Confidence 357799999999998874433 2334444444445567899999999999999999999999999999854 046799
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 023425 109 GAALLVDAAN----MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASAL 182 (282)
Q Consensus 109 A~~~~~~Aa~----~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~ 182 (282)
|+.+|+++++ +.++.+++.+|.++.. ..++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+
T Consensus 96 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~ 167 (225)
T 2vq2_A 96 SMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML----AGQLGDAD 167 (225)
T ss_dssp HHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHH
T ss_pred HHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----cCCHHHHH
Confidence 9999999998 3457999999999998 44559999999999986 679999999999999 99999999
Q ss_pred HHHHHHHHc---CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 183 WCFHRASEK---GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 183 ~~~~~A~~~---g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+|+++++. .++.++..++.++.. .++.+.+..+++.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKA----LGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHH
Confidence 999999774 678888888888887 6788888888887754
No 59
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=1.2e-13 Score=119.14 Aligned_cols=188 Identities=13% Similarity=-0.002 Sum_probs=155.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|+++.+++.+|.++... .++++|+.+|+++.+ +.++.+++.+|.+|.. ..+++
T Consensus 35 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~ 106 (327)
T 3cv0_A 35 ANLAEAALAFEAVCQAAPEREEAWRSLGLTQAEN----EKDGLAIIALNHARMLDPKDIAVHAALAVSHTN----EHNAN 106 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH----cCCHH
Confidence 4599999999999999999999999999999976 577999999999985 5689999999999998 44559
Q ss_pred HHHHHHHHHHHc--CCHHHHHHH--------------HH-HHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLL--------------GT-VYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLL 204 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~L--------------g~-~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y 204 (282)
+|+.+|+++.+. .+......+ |. ++.. .+++++|+.+|+++++. .++.+++.+|.+|
T Consensus 107 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA----PNEYRECRTLLHAALEMNPNDAQLHASLGVLY 182 (327)
T ss_dssp HHHHHHHHHHHTSTTTTTC--------------------CCTTS----HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 999999999986 344444444 54 4655 89999999999999875 4689999999999
Q ss_pred HcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Q 023425 205 LRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 205 ~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~ 269 (282)
.. .+++++|+.+++++.. .++..+|. ...+++++|+.+|+++.+.. ++.+...++.+....
T Consensus 183 ~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 183 NL----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HH----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 98 8999999999999987 45667774 47889999999999999976 567777777776654
No 60
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.59 E-value=3.2e-14 Score=117.00 Aligned_cols=164 Identities=15% Similarity=0.069 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHH----------------HHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYW----------------LSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYE 127 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~----------------Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~ 127 (282)
+++++|+.+|+++++.+|+++.+++. +|.+|... .++++|+.+|+++++ +++++++++
T Consensus 18 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~ 93 (208)
T 3urz_A 18 GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN----RNYDKAYLFYKELLQKAPNNVDCLEA 93 (208)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 45999999999999999999999998 66666644 455666666666653 456666666
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH-AGAAIAYGSLL 204 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~-~~a~~~Lg~~y 204 (282)
||.+|.. ..++++|+.+|+++++. +++.++++||.+|..-. ..+...+...|+++..... ..+.+++|.++
T Consensus 94 lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~ 167 (208)
T 3urz_A 94 CAEMQVC----RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA--EQEKKKLETDYKKLSSPTKMQYARYRDGLSK 167 (208)
T ss_dssp HHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 6666665 33336666666666654 45666666666654300 1223444555555443322 12445555554
Q ss_pred HcCCCCcccHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHH
Q 023425 205 LRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAG-CNLGLRWLQRIEEEE 269 (282)
Q Consensus 205 ~~g~g~~~~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g-~~~a~~~l~~l~~~~ 269 (282)
.. .+++++|+.+|++|++.. +..+...|.++.+..
T Consensus 168 ~~------------------------------~~~~~~A~~~~~~al~l~P~~~~~~~l~~i~~~~ 203 (208)
T 3urz_A 168 LF------------------------------TTRYEKARNSLQKVILRFPSTEAQKTLDKILRIE 203 (208)
T ss_dssp HH------------------------------HHTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred HH------------------------------ccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 43 345567888888888765 344556666665443
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.58 E-value=2e-13 Score=121.91 Aligned_cols=196 Identities=11% Similarity=-0.047 Sum_probs=151.3
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----C-----CH
Q 023425 58 ELNDRRLIPLLKTAKENFELALEA------DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM----G-----DP 122 (282)
Q Consensus 58 ~~~~~~~~~~~~~A~~~~~~a~~~------~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g-----~~ 122 (282)
.|......+++++|+.+|++|++. .++.+.+++.+|.+|... .++++|+.+|++|.+. + .+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM----KQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 444455567899999999999875 333568999999999976 6789999999999852 2 35
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH----
Q 023425 123 DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASE---- 190 (282)
Q Consensus 123 ~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---- 190 (282)
.++.+||.+|.. ..++++|+.+|++|.+. ++ +.++++||.+|.. .+++++|+.+|++|++
T Consensus 185 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 185 QCHSLFATNFLD----LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHh
Confidence 689999999999 45559999999999875 33 3588999999999 9999999999999988
Q ss_pred ----cCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH-----------chhchh--ccCCC---HHHHHHHHHHH
Q 023425 191 ----KGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA-----------RANLES--NLMNP---VEKAKEQFEVA 250 (282)
Q Consensus 191 ----~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a-----------~~~lg~--~~~~~---~~~A~~~~~~A 250 (282)
...+.++++||.+|.. .+++++|..+++++.... ...+|. ...++ +.+|+.+++++
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYK----LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred hccchhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 3357789999999998 899999999999998732 234553 25555 88888888877
Q ss_pred HHhc-cHHHHHHHHHHHHHH
Q 023425 251 AQAG-CNLGLRWLQRIEEEE 269 (282)
Q Consensus 251 a~~g-~~~a~~~l~~l~~~~ 269 (282)
-... ...+...|+.+....
T Consensus 333 ~~~~~~~~~~~~la~~y~~~ 352 (383)
T 3ulq_A 333 MLYADLEDFAIDVAKYYHER 352 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHC
Confidence 2211 223445566655543
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=4.7e-14 Score=125.48 Aligned_cols=230 Identities=13% Similarity=-0.020 Sum_probs=176.1
Q ss_pred hcccchHHHHHHHHHHhhhhhHHH---HHHHHHhhcCCCchhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHhc
Q 023425 28 WLHSRNKKAMELIAKGWSALKEVD---RVIDYCELNDRRLIPLLKTAKENFELALEA------DNSNTHARYWLSKLHLK 98 (282)
Q Consensus 28 ~~~~~~~~A~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~g~~~a~~~Lg~~~~~ 98 (282)
...+++++|++++.+++...+... ....+..+..+...+++++|+.+|+++++. .+..+.+++.+|.++..
T Consensus 20 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 99 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 99 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 446789999999999987544321 234455555555668899999999999875 44557799999999986
Q ss_pred CCCCCcCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCC-------------C---cCCHHHHHHHHHHHHH
Q 023425 99 YHVPGACKAMGAALLVDAANM----GD----PDAQYELGCRLRVEND-------------Y---VQSDQQAFYYIEKAVD 154 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~~----g~----~~A~~~Lg~~y~~g~~-------------~---~~d~~~A~~~~~kAa~ 154 (282)
. .++++|+.+|+++.+. ++ +.++.++|.+|...+. . .+++++|+.+|.++.+
T Consensus 100 ~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 175 (406)
T 3sf4_A 100 L----GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS 175 (406)
T ss_dssp T----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred c----CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6 5789999999999753 33 5689999999987333 0 0016999999999876
Q ss_pred c----C----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcccHHHHH
Q 023425 155 Q----L----HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPECLTKLN 218 (282)
Q Consensus 155 ~----g----~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~~~~A~ 218 (282)
. + .+.++.++|.+|.. .+++++|+.+|+++++. ++ ..+++++|.+|.. .+++++|.
T Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 247 (406)
T 3sf4_A 176 LVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETAS 247 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----cCChHHHH
Confidence 4 2 35688999999999 99999999999999764 33 4489999999998 89999999
Q ss_pred HHHHHHHH------------HHchhchh--ccCCCHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHH
Q 023425 219 AKRVSAAK------------KARANLES--NLMNPVEKAKEQFEVAAQAGC--------NLGLRWLQRIEEEE 269 (282)
Q Consensus 219 ~~~~~a~~------------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g~--------~~a~~~l~~l~~~~ 269 (282)
.+++++.. ..+.++|. ...+++++|+.+|++|.+... ..+...++.+....
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 99999986 24456663 478899999999999988642 34556666666544
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.57 E-value=1.6e-13 Score=118.06 Aligned_cols=230 Identities=13% Similarity=-0.036 Sum_probs=169.8
Q ss_pred cccchHHHHHHHHHHhhhhhHHH---HHHHHHhhcCCCchhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHhcC
Q 023425 29 LHSRNKKAMELIAKGWSALKEVD---RVIDYCELNDRRLIPLLKTAKENFELALEA------DNSNTHARYWLSKLHLKY 99 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~g~~~a~~~Lg~~~~~~ 99 (282)
..+++++|+.++.+++...+... ....+..+..+...+++++|+.+|+++++. .+..+.+++.+|.++...
T Consensus 17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 96 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 45678999999999887543221 234445555555567899999999999875 445577889999999865
Q ss_pred CCCCcCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCC----------------cCCHHHHHHHHHHHHHc
Q 023425 100 HVPGACKAMGAALLVDAANM----GD----PDAQYELGCRLRVENDY----------------VQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 100 ~~~~~~~~~A~~~~~~Aa~~----g~----~~A~~~Lg~~y~~g~~~----------------~~d~~~A~~~~~kAa~~ 155 (282)
.++++|+.+|+++.+. ++ ..++..+|.+|...+.. .+.+++|+.+|+++...
T Consensus 97 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 97 ----GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5779999999998753 33 45888999988773330 00168899999888753
Q ss_pred ----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcccHHHHHH
Q 023425 156 ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPECLTKLNA 219 (282)
Q Consensus 156 ----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~~~~A~~ 219 (282)
++ +.++..+|.+|.. .+++++|+.+|+++++. ++ ..+++++|.+|.. .+++++|..
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 244 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASE 244 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHH
Confidence 32 5678899999998 89999999999998764 33 3488999999998 889999999
Q ss_pred HHHHHHHH------------Hchhch--hccCCCHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHh
Q 023425 220 KRVSAAKK------------ARANLE--SNLMNPVEKAKEQFEVAAQAGC--------NLGLRWLQRIEEEEK 270 (282)
Q Consensus 220 ~~~~a~~~------------a~~~lg--~~~~~~~~~A~~~~~~Aa~~g~--------~~a~~~l~~l~~~~~ 270 (282)
+++++... .+..+| ....+++++|+.+|++|.+... ..+...++.+.....
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 99998762 344566 3478899999999999987643 225556666665543
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=7.3e-14 Score=115.63 Aligned_cols=135 Identities=18% Similarity=0.104 Sum_probs=113.2
Q ss_pred hcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHH
Q 023425 28 WLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 28 ~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~ 107 (282)
...+++++|++.|.+++...+.......+..+......+++++|+.+|+++++.+|.++.+++.+|.+|... .+++
T Consensus 18 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~ 93 (228)
T 4i17_A 18 LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDM----KNNQ 93 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHT----TCHH
T ss_pred HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHc----ccHH
Confidence 346779999999999988554233344555666666678899999999999999999999999999999976 6789
Q ss_pred HHHHHHHHHHh--CCCH-------HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C--CHHHHHHHHHHHhc
Q 023425 108 MGAALLVDAAN--MGDP-------DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L--HPGALYLLGTVYLT 170 (282)
Q Consensus 108 ~A~~~~~~Aa~--~g~~-------~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g--~~~A~~~Lg~~y~~ 170 (282)
+|+.+|+++++ +.++ .+++++|.++.. ..++++|+.+|+++++. . ++.++++||.+|..
T Consensus 94 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 94 EYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 99999999985 5677 679999999998 45559999999999987 4 56899999999976
No 65
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.56 E-value=1.1e-13 Score=123.54 Aligned_cols=213 Identities=10% Similarity=0.020 Sum_probs=141.6
Q ss_pred cccchHHHHHHHHHHhhhhh-----HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHH
Q 023425 29 LHSRNKKAMELIAKGWSALK-----EVDRVIDYCELNDRRLIPLLKTAKENFELALEADN-------SNTHARYWLSKLH 96 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------g~~~a~~~Lg~~~ 96 (282)
..+++++|++.+.+++.... .......+..+..+...+++++|+.+|++|++..+ +.+.++++||.+|
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 46778888888888776432 22334455555555556778888888888876422 2245677888888
Q ss_pred hcCCCCCcCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH-----c--CCHHHH
Q 023425 97 LKYHVPGACKAMGAALLVDAANM----GD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD-----Q--LHPGAL 161 (282)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~Aa~~----g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~-----~--g~~~A~ 161 (282)
... .++++|+.+|++|++. ++ ..++++||.+|.. ..++++|+.+|++|.+ . ..+.++
T Consensus 193 ~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 193 DDF----KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHh----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 765 5678888888888752 33 4577788888877 4445888888888877 3 236778
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-----HHc
Q 023425 162 YLLGTVYLTGDCVKKDIASALWCFHRASEK----GH---AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK-----KAR 229 (282)
Q Consensus 162 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-----~a~ 229 (282)
++||.+|.. .+++++|+.+|++|++. ++ ......|+.+|.... ....+.+|+.++++... ..+
T Consensus 265 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~-~~~~~~~al~~~~~~~~~~~~~~~~ 339 (378)
T 3q15_A 265 FGLSWTLCK----AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV-DERKIHDLLSYFEKKNLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhCCChhHHHHHH
Confidence 888888887 78888888888888763 12 334556666666521 11336777777766421 344
Q ss_pred hhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 230 ANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 230 ~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
..+|. ...+++++|..+|++|.+..
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45663 36778888888888887654
No 66
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.56 E-value=4.1e-13 Score=116.33 Aligned_cols=205 Identities=10% Similarity=-0.041 Sum_probs=154.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHhcCCCCCcCHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEA--DNSNTHARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~g~~~a~~~Lg~~~~~~~~~~~~~~ 107 (282)
.+++++|+.-+... ..................++.++|++.|++.+.. +|+++.+++.+|.++... ++++
T Consensus 47 ~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~----g~~~ 118 (291)
T 3mkr_A 47 QRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD----QNPD 118 (291)
T ss_dssp TTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT----TCHH
T ss_pred CCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC----CCHH
Confidence 55677777655431 1111122222222333446789999999998865 599999999999999976 5779
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHhcCCCCccCHHHHHH
Q 023425 108 MGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLG----TVYLTGDCVKKDIASALW 183 (282)
Q Consensus 108 ~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg----~~y~~g~g~~~d~~~A~~ 183 (282)
+|+.+|++ +++++++..+|.+|...++. ++|+.+|+++.+.........++ .++.. .+++++|+.
T Consensus 119 ~Al~~l~~---~~~~~~~~~l~~~~~~~g~~----~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~----~~~~~eA~~ 187 (291)
T 3mkr_A 119 AALRTLHQ---GDSLECMAMTVQILLKLDRL----DLARKELKKMQDQDEDATLTQLATAWVSLAAG----GEKLQDAYY 187 (291)
T ss_dssp HHHHHHTT---CCSHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC----TTHHHHHHH
T ss_pred HHHHHHhC---CCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC----chHHHHHHH
Confidence 99999999 78999999999999995555 99999999999874333334443 22333 588999999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchhc--cCCCH-HHHHHHHHHHHH
Q 023425 184 CFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLESN--LMNPV-EKAKEQFEVAAQ 252 (282)
Q Consensus 184 ~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~~--~~~~~-~~A~~~~~~Aa~ 252 (282)
+|+++++. .++.+++++|.+|.. .+++++|...|++++. .+++++|.. ..++. +.+..+++++.+
T Consensus 188 ~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 188 IFQEMADKCSPTLLLLNGQAACHMA----QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999885 578999999999999 8999999999999998 478888843 45554 457899999998
Q ss_pred hccHH
Q 023425 253 AGCNL 257 (282)
Q Consensus 253 ~g~~~ 257 (282)
..+..
T Consensus 264 ~~P~~ 268 (291)
T 3mkr_A 264 AHRSH 268 (291)
T ss_dssp HCTTC
T ss_pred hCCCC
Confidence 87433
No 67
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.56 E-value=2.4e-14 Score=111.77 Aligned_cols=136 Identities=12% Similarity=0.084 Sum_probs=114.3
Q ss_pred hcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCC
Q 023425 59 LNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVEN 136 (282)
Q Consensus 59 ~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~ 136 (282)
|......+++++|+..|++++..+|.++.+++.||.+|... +++++|+.+|++++ ++.+++++++||.+|..
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~----~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-- 77 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEA----KEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-- 77 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Confidence 34455678899999999999998888999999999999976 67899999999997 46799999999999998
Q ss_pred CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHH-HHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 137 DYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALW-CFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~-~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
..++++|+.+|+++++. +++.++++||.+|.. .+++++|.. |+++|++. +++.++...+.++..
T Consensus 78 --~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 78 --EENTDKAVECYRRSVELNPTQKDLVLKIAELLCK----NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred --cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 44559999999999987 689999999999998 788877665 56888764 688888888888764
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=2.9e-13 Score=116.44 Aligned_cols=211 Identities=13% Similarity=0.026 Sum_probs=164.3
Q ss_pred cccchHHHHHHHHHHhhhhh-----HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHh
Q 023425 29 LHSRNKKAMELIAKGWSALK-----EVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN------THARYWLSKLHL 97 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~------~~a~~~Lg~~~~ 97 (282)
..+++++|++++.+++.... .......+..+..+...+++++|+.+|+++++..+.. +.+++.+|.++.
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 55 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 37889999999999876432 2223344455555556678999999999998754332 348899999988
Q ss_pred cCCCCCcC--------------------HHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCCcCCHHHHHHHH
Q 023425 98 KYHVPGAC--------------------KAMGAALLVDAANM----G----DPDAQYELGCRLRVENDYVQSDQQAFYYI 149 (282)
Q Consensus 98 ~~~~~~~~--------------------~~~A~~~~~~Aa~~----g----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~ 149 (282)
.. .+ +++|+.+|+++.+. + .+.++.++|.++.. ..++++|+.+|
T Consensus 135 ~~----~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~ 206 (338)
T 3ro2_A 135 AK----GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAH 206 (338)
T ss_dssp HH----HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHH
T ss_pred Hc----CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHH
Confidence 54 34 78999999998642 3 35689999999998 55569999999
Q ss_pred HHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCccc
Q 023425 150 EKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPEC 213 (282)
Q Consensus 150 ~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~ 213 (282)
+++.+. ++ ..++..+|.+|.. .+++++|+.+|+++++. ++ +.++..+|.+|.. .++
T Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~ 278 (338)
T 3ro2_A 207 EQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL----LQD 278 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTC
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH----hcC
Confidence 999875 33 3488999999999 99999999999999764 22 6789999999998 899
Q ss_pred HHHHHHHHHHHHHH------------Hchhchh--ccCCCHHHHHHHHHHHHHhcc
Q 023425 214 LTKLNAKRVSAAKK------------ARANLES--NLMNPVEKAKEQFEVAAQAGC 255 (282)
Q Consensus 214 ~~~A~~~~~~a~~~------------a~~~lg~--~~~~~~~~A~~~~~~Aa~~g~ 255 (282)
+++|..+++++... ++..+|. ...+++++|..+|++|.+...
T Consensus 279 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 279 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 99999999999762 4456663 478899999999999998654
No 69
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=7.4e-13 Score=111.63 Aligned_cols=192 Identities=10% Similarity=-0.084 Sum_probs=154.6
Q ss_pred CCCchhhHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhc
Q 023425 61 DRRLIPLLKTAKENFELALEA----DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRV 134 (282)
Q Consensus 61 ~~~~~~~~~~A~~~~~~a~~~----~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~ 134 (282)
.....+++++|+..|+++++. +|+++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.+|..
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL----GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 344568899999999999976 356789999999999976 578999999999985 5689999999999998
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC
Q 023425 135 ENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQV 210 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~ 210 (282)
..++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.....++.++.
T Consensus 90 ----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~----- 156 (275)
T 1xnf_A 90 ----AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ----- 156 (275)
T ss_dssp ----TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred ----ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----
Confidence 45559999999999986 689999999999999 89999999999999875 45656666665544
Q ss_pred cccHHHHHHHHHHHHHH------Hchhch-hccCCCHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHH
Q 023425 211 PECLTKLNAKRVSAAKK------ARANLE-SNLMNPVEKAKEQFEVAAQAGC------NLGLRWLQRIEEEE 269 (282)
Q Consensus 211 ~~~~~~A~~~~~~a~~~------a~~~lg-~~~~~~~~~A~~~~~~Aa~~g~------~~a~~~l~~l~~~~ 269 (282)
.+++++|..+++++... .+...+ .....+.++|+..++++.+... +.+...++.+....
T Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 228 (275)
T 1xnf_A 157 KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL 228 (275)
T ss_dssp HHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc
Confidence 57899999999998873 222222 2355677899999999887664 46667777776644
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.53 E-value=4.2e-13 Score=105.84 Aligned_cols=146 Identities=15% Similarity=0.035 Sum_probs=128.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++..|.++.+++.+|.++... .++++|+.+|+++.+ +.++.++..+|.++.. ..++
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~ 92 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKT----GAVDRGTELLERSLADAPDNVKVATVLGLTYVQ----VQKY 92 (186)
T ss_dssp HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCH
T ss_pred hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCH
Confidence 35699999999999999999999999999999865 578999999999985 5689999999999998 5556
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHH
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLN 218 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~ 218 (282)
++|+.+|+++... .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|.
T Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~ 164 (186)
T 3as5_A 93 DLAVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ----MGRHEEAL 164 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH----cCCHHHHH
Confidence 9999999999886 689999999999998 89999999999999876 468899999999998 77888777
Q ss_pred HHHHHHHH
Q 023425 219 AKRVSAAK 226 (282)
Q Consensus 219 ~~~~~a~~ 226 (282)
.+++++..
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777655
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=1.8e-13 Score=117.20 Aligned_cols=213 Identities=13% Similarity=-0.004 Sum_probs=118.7
Q ss_pred ccchHHHHHHHHHHhhhh-------hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSAL-------KEVDRVIDYCELNDRRLIPLLKTAKENFELALEA--------DNSNTHARYWLSK 94 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~g~~~a~~~Lg~ 94 (282)
.+++++|++++.+++... ........+..+..+...+++++|+.+|+++++. .+..+.+++.+|.
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 456677777777766532 1222233344444444456677777777777654 3445566777777
Q ss_pred HHhcCCCCCcCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc------C--
Q 023425 95 LHLKYHVPGACKAMGAALLVDAANM----------GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ------L-- 156 (282)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~------g-- 156 (282)
+|... .++++|+.+|+++.+. ....+++++|.++.. ..++++|+.+|+++.+. +
T Consensus 120 ~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 120 LYGKR----GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN----QGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHTT----TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHc----CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77644 4567777777777642 234566777777766 33347777777777664 1
Q ss_pred --CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCCC--CcccHHHHHHHH
Q 023425 157 --HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG-----------HAGAAIAYGSLLLRGVQ--VPECLTKLNAKR 221 (282)
Q Consensus 157 --~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-----------~~~a~~~Lg~~y~~g~g--~~~~~~~A~~~~ 221 (282)
.+.++..+|.+|.. .+++++|+.+|+++++.. ....+..++.++..+.. ....+.++..++
T Consensus 192 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLK----QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp HHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 24456677777776 677777777777776521 11122333333332211 122233333444
Q ss_pred HHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 222 VSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 222 ~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
+++.. .++.++|. ...+++++|+.+|++|.+..
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 44432 35556773 47788999999999998764
No 72
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.53 E-value=1.1e-13 Score=116.74 Aligned_cols=213 Identities=12% Similarity=-0.022 Sum_probs=124.7
Q ss_pred cccchHHHHHHHHHHhhhhh-------HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc--------CCCCHHHHHHHH
Q 023425 29 LHSRNKKAMELIAKGWSALK-------EVDRVIDYCELNDRRLIPLLKTAKENFELALEA--------DNSNTHARYWLS 93 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~g~~~a~~~Lg 93 (282)
-.+++++|++++.+++.... .......+..+..+...+++++|+.+|+++++. +|..+.+++.+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35667777777777776443 223344555555555667777777777777765 345566777777
Q ss_pred HHHhcCCCCCcCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--------
Q 023425 94 KLHLKYHVPGACKAMGAALLVDAANM----------GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-------- 155 (282)
Q Consensus 94 ~~~~~~~~~~~~~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-------- 155 (282)
.+|... .++++|+.+|+++++. ..+.++.++|.+|... .++++|+.+|+++.+.
T Consensus 93 ~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 93 VLYGKR----GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ----GKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHTT----TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHh----ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCC
Confidence 777755 5667777777777643 2356677777777763 3447777777777664
Q ss_pred C--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHcCCC--CcccHHHHHHH
Q 023425 156 L--HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-----------GHAGAAIAYGSLLLRGVQ--VPECLTKLNAK 220 (282)
Q Consensus 156 g--~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----------g~~~a~~~Lg~~y~~g~g--~~~~~~~A~~~ 220 (282)
. .+.++..||.+|.. .+++++|+.+|+++++. .....+..++.++..+.. ....+..+..+
T Consensus 165 ~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLK----QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSW 240 (283)
T ss_dssp CHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC----------
T ss_pred CHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 1 24566777777777 77777777777777653 122344445554443221 11222233333
Q ss_pred HHHHH------HHHchhchh--ccCCCHHHHHHHHHHHHHh
Q 023425 221 RVSAA------KKARANLES--NLMNPVEKAKEQFEVAAQA 253 (282)
Q Consensus 221 ~~~a~------~~a~~~lg~--~~~~~~~~A~~~~~~Aa~~ 253 (282)
++... ..++..+|. ...+++++|+.+|++|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 241 YKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 32221 124455663 3677888888888888754
No 73
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.53 E-value=4.7e-13 Score=115.97 Aligned_cols=224 Identities=8% Similarity=-0.064 Sum_probs=167.9
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
-.|++..|+.+..+.....+.......+.....+...+++++|+..++.. +|.+..+...++.++... .+.++
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~----~~~~~ 83 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASH----SRRDA 83 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCS----TTHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCC----CcHHH
Confidence 36789999998877544333322212222223333446689999888763 566778888889888865 57799
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 109 GAALLVDAAN----MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 109 A~~~~~~Aa~----~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
|+..+++.+. ++++.+++.+|.++...+ ++++|+.+|.+ .++++++..+|.+|.. .+++++|+.+
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g----~~~~Al~~l~~---~~~~~~~~~l~~~~~~----~g~~~~A~~~ 152 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQ----NPDAALRTLHQ---GDSLECMAMTVQILLK----LDRLDLARKE 152 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT----CHHHHHHHHTT---CCSHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC----CHHHHHHHHhC---CCCHHHHHHHHHHHHH----CCCHHHHHHH
Confidence 9999999874 678999999999999944 45999999999 6899999999999999 9999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc--
Q 023425 185 FHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG-- 254 (282)
Q Consensus 185 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g-- 254 (282)
|+++.+........+++..+..-....+++++|+..|+++++ ..++++|. ...+++++|...|++|.+..
T Consensus 153 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999988754434444443222100014789999999999998 46777884 48899999999999999976
Q ss_pred cHHHHHHHHHHHHHHh
Q 023425 255 CNLGLRWLQRIEEEEK 270 (282)
Q Consensus 255 ~~~a~~~l~~l~~~~~ 270 (282)
++.+..+++.+.....
T Consensus 233 ~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 233 HPETLINLVVLSQHLG 248 (291)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 7778888876665543
No 74
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.52 E-value=2.4e-13 Score=114.49 Aligned_cols=185 Identities=11% Similarity=-0.066 Sum_probs=134.4
Q ss_pred ccchHHHHHHHHHHhhhh-------hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSAL-------KEVDRVIDYCELNDRRLIPLLKTAKENFELALEA--------DNSNTHARYWLSK 94 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~g~~~a~~~Lg~ 94 (282)
.+++++|++++.+++... ...........+..+...+++++|+.+|+++++. +|..+.+++++|.
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 135 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL 135 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 789999999999988754 1334456667777777889999999999999987 4677889999999
Q ss_pred HHhcCCCCCcCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---------
Q 023425 95 LHLKYHVPGACKAMGAALLVDAANM----------GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--------- 155 (282)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--------- 155 (282)
+|... .++++|+.+|+++++. ....++.+||.+|.. ..++++|+.+|+++.+.
T Consensus 136 ~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~ 207 (283)
T 3edt_B 136 LCQNQ----GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK----QGKYQDAETLYKEILTRAHEKEFGSV 207 (283)
T ss_dssp HHHTT----TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHc----CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99976 6789999999999864 135689999999999 55569999999999874
Q ss_pred --CCHHHHHHHHHHHhcCC--CCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 156 --LHPGALYLLGTVYLTGD--CVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 156 --g~~~A~~~Lg~~y~~g~--g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.....+..++..+..+. .....+.++..+++..... ..+.++..||.+|.. .+++++|..+|+++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRR----QGKLEAAHTLEDCASR 280 (283)
T ss_dssp CSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 23445666666665532 2233455555555544322 246689999999998 8899999999988864
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.51 E-value=2.5e-13 Score=114.95 Aligned_cols=180 Identities=13% Similarity=0.080 Sum_probs=129.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHhcCC
Q 023425 65 IPLLKTAKENFELALEADNSN---THARYWLSKLHLKYHVPGACKAMGAALLVDAANM-----GDPDAQYELGCRLRVEN 136 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~---~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~-----g~~~A~~~Lg~~y~~g~ 136 (282)
.+++++|+..|+++++..|++ +.+++.+|.+|... .++++|+.+|+++++. ..+.+++.+|.++....
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~ 103 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQN----KEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLS 103 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHh----CcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhc
Confidence 345999999999999999999 99999999999876 6789999999999864 23789999999987611
Q ss_pred C----CcCCHHHHHHHHHHHHHc--CCHHHH-----------------HHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-
Q 023425 137 D----YVQSDQQAFYYIEKAVDQ--LHPGAL-----------------YLLGTVYLTGDCVKKDIASALWCFHRASEKG- 192 (282)
Q Consensus 137 ~----~~~d~~~A~~~~~kAa~~--g~~~A~-----------------~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g- 192 (282)
. ...++++|+.+|+++++. +++.+. +.+|.+|.. .+++++|+.+|+++++..
T Consensus 104 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p 179 (261)
T 3qky_A 104 PPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER----RELYEAAAVTYEAVFDAYP 179 (261)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCT
T ss_pred ccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCC
Confidence 1 123459999999999986 344344 888999998 899999999999998752
Q ss_pred ----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhc--c---HHHHHHHH
Q 023425 193 ----HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAG--C---NLGLRWLQ 263 (282)
Q Consensus 193 ----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g--~---~~a~~~l~ 263 (282)
.+.+++.+|.+|.. .++.. +.....+++++|+.+|+++++.. + ..+...+.
T Consensus 180 ~~~~~~~a~~~l~~~~~~----~g~~~----------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 180 DTPWADDALVGAMRAYIA----YAEQS----------------VRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp TSTTHHHHHHHHHHHHHH----HHHTS----------------CGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHH----hcccc----------------hhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 36789999998875 10000 00001134466777777777654 2 34555666
Q ss_pred HHHHHHhhc
Q 023425 264 RIEEEEKRL 272 (282)
Q Consensus 264 ~l~~~~~~~ 272 (282)
.+.......
T Consensus 240 ~~~~~~~~~ 248 (261)
T 3qky_A 240 RARQRLTEL 248 (261)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666655443
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=4e-13 Score=115.07 Aligned_cols=145 Identities=14% Similarity=0.012 Sum_probs=124.2
Q ss_pred hhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----------CCHHHHHH
Q 023425 66 PLLKTAKENFELALEA--------DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM----------GDPDAQYE 127 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~--------~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----------g~~~A~~~ 127 (282)
+++++|+.+|+++++. .+..+.+++.+|.+|... .++++|+.+|+++++. ..+.++++
T Consensus 41 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 116 (311)
T 3nf1_A 41 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ----NKYKDAANLLNDALAIREKTLGKDHPAVAATLNN 116 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 4599999999999983 677788999999999976 5789999999999853 24678999
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc------
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ----------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK------ 191 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------ 191 (282)
+|.+|.. ..++++|+.+|+++.+. ....++..+|.+|.. .+++++|+.+|+++++.
T Consensus 117 l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 117 LAVLYGK----RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN----QGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHH----cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhC
Confidence 9999998 44559999999999875 236778999999999 89999999999999875
Q ss_pred C----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 192 G----HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 192 g----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+ .+.+++.+|.+|.. .+++++|..+|+++..
T Consensus 189 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLK----QGKFKQAETLYKEILT 223 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 2 25679999999998 8999999999999987
No 77
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.49 E-value=6.2e-13 Score=109.22 Aligned_cols=163 Identities=10% Similarity=-0.021 Sum_probs=124.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHH----------------hhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYC----------------ELNDRRLIPLLKTAKENFELALEADNSNTHARYWLS 93 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg 93 (282)
.+++++|++.|.+++...+.. ....+. .+..+...+++++|+.+|+++++.+|+++.++++||
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 95 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALNIDR-TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACA 95 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCHHH-HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCC-hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 467999999999998754433 333344 555566678899999999999999999999999999
Q ss_pred HHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhc
Q 023425 94 KLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLH-PGALYLLGTVYLT 170 (282)
Q Consensus 94 ~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~-~~A~~~Lg~~y~~ 170 (282)
.++... .++++|+.+|++++ ++++++++++||.+|...+ ..+...+...|.++..... ..+++.+|.++..
T Consensus 96 ~~~~~~----g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~ 169 (208)
T 3urz_A 96 EMQVCR----GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA--EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLF 169 (208)
T ss_dssp HHHHHH----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHc----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 999966 57899999999997 5789999999999986421 1223667778887765432 2477889999988
Q ss_pred CCCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 023425 171 GDCVKKDIASALWCFHRASEKG-HAGAAIAYGSL 203 (282)
Q Consensus 171 g~g~~~d~~~A~~~~~~A~~~g-~~~a~~~Lg~~ 203 (282)
.+++++|+.+|++|++.. +..+...|..+
T Consensus 170 ----~~~~~~A~~~~~~al~l~P~~~~~~~l~~i 199 (208)
T 3urz_A 170 ----TTRYEKARNSLQKVILRFPSTEAQKTLDKI 199 (208)
T ss_dssp ----HHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred ----ccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 899999999999999864 34454445443
No 78
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.49 E-value=2.1e-12 Score=109.18 Aligned_cols=135 Identities=13% Similarity=0.019 Sum_probs=109.4
Q ss_pred HcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCC---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH
Q 023425 80 EADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGD---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 80 ~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~ 154 (282)
+.+|.++.+++.+|..+... +++++|+..|+++++ +++ +++++.+|.+|.. ..++++|+.+|+++++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQ----GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ----NKEYLLAASEYERFIQ 80 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHT----TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH----hCcHHHHHHHHHHHHH
Confidence 36789999999999999976 678999999999986 456 8999999999999 5556999999999998
Q ss_pred c-----CCHHHHHHHHHHHhcCC----CCccCHHHHHHHHHHHHHcC--CHHHH-----------------HHHHHHHHc
Q 023425 155 Q-----LHPGALYLLGTVYLTGD----CVKKDIASALWCFHRASEKG--HAGAA-----------------IAYGSLLLR 206 (282)
Q Consensus 155 ~-----g~~~A~~~Lg~~y~~g~----g~~~d~~~A~~~~~~A~~~g--~~~a~-----------------~~Lg~~y~~ 206 (282)
. ..+.+++.+|.+|.... ...+++++|+.+|+++++.. ++.+. +.+|.+|..
T Consensus 81 ~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 81 IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER 160 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 33789999999987511 11588999999999998853 33333 788888887
Q ss_pred CCCCcccHHHHHHHHHHHHH
Q 023425 207 GVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 207 g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+++++|+.+|++++.
T Consensus 161 ----~g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 161 ----RELYEAAAVTYEAVFD 176 (261)
T ss_dssp ----TTCHHHHHHHHHHHHH
T ss_pred ----ccCHHHHHHHHHHHHH
Confidence 7888888888887765
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.49 E-value=1.8e-12 Score=115.77 Aligned_cols=199 Identities=10% Similarity=-0.017 Sum_probs=150.5
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----C----
Q 023425 55 DYCELNDRRLIPLLKTAKENFELALEA------DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM----G---- 120 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g---- 120 (282)
++..|......+++++|+.+|++|++. .+..+.++++||.+|... .++++|+.++++|.+. +
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~----~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM----KQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHHHHhCCCchh
Confidence 344455555568899999999999864 223567999999999976 5789999999999752 2
Q ss_pred -CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH-
Q 023425 121 -DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASE- 190 (282)
Q Consensus 121 -~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~- 190 (282)
.+.++.+||.+|.. ..++++|+.+|++|.+. ++ +.++++||.+|.. .+++++|+.+|++|++
T Consensus 180 ~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 180 RTIQSLFVIAGNYDD----FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence 25688999999999 45559999999999874 33 5688999999999 9999999999999987
Q ss_pred ----c--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH-----------chhchhc--cCCC---HHHHHHHHH
Q 023425 191 ----K--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA-----------RANLESN--LMNP---VEKAKEQFE 248 (282)
Q Consensus 191 ----~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a-----------~~~lg~~--~~~~---~~~A~~~~~ 248 (282)
. ..+.++++||.+|.. .+++++|..+++++.... ...++.. ..++ +.+|+.+++
T Consensus 252 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 252 SREKVPDLLPKVLFGLSWTLCK----AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHhhCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3 237889999999998 899999999999998832 1233322 4445 888888888
Q ss_pred HHHHhc-cHHHHHHHHHHHHHH
Q 023425 249 VAAQAG-CNLGLRWLQRIEEEE 269 (282)
Q Consensus 249 ~Aa~~g-~~~a~~~l~~l~~~~ 269 (282)
+..... .......++.+....
T Consensus 328 ~~~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 328 KKNLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT
T ss_pred hCCChhHHHHHHHHHHHHHHHC
Confidence 732211 223444455555543
No 80
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.48 E-value=7.2e-14 Score=134.87 Aligned_cols=180 Identities=9% Similarity=0.044 Sum_probs=140.8
Q ss_pred cccchHHHHHHHHHHh--------hhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCC
Q 023425 29 LHSRNKKAMELIAKGW--------SALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYH 100 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~ 100 (282)
..+++++|++.+.+++ ... .......+..+..+...+++++|+..|+++++.+|+++.+++++|.++...
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~- 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT- 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc-
Confidence 4678999999999987 322 222233344444444557799999999999999999999999999999865
Q ss_pred CCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCcc
Q 023425 101 VPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKK 176 (282)
Q Consensus 101 ~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~ 176 (282)
.++++|+..|++|+ +++++.++++||.+|...+.. ++ +.+|++|++. +++.++++||.+|.. .+
T Consensus 481 ---g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~----~~-~~~~~~al~~~P~~~~a~~~lg~~~~~----~g 548 (681)
T 2pzi_A 481 ---GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNT----DE-HKFYQTVWSTNDGVISAAFGLARARSA----EG 548 (681)
T ss_dssp ---TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC----CT-TCHHHHHHHHCTTCHHHHHHHHHHHHH----TT
T ss_pred ---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh----HH-HHHHHHHHHhCCchHHHHHHHHHHHHH----cC
Confidence 57899999999997 467999999999999985555 78 9999999886 689999999999999 89
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC----CcccHHHHHHHHH
Q 023425 177 DIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQ----VPECLTKLNAKRV 222 (282)
Q Consensus 177 d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g----~~~~~~~A~~~~~ 222 (282)
++++|+.+|++|++. .++.+++++|.++..+.. ...++.+|...+.
T Consensus 549 ~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~ 600 (681)
T 2pzi_A 549 DRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVE 600 (681)
T ss_dssp CHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHh
Confidence 999999999999765 568899999999877532 1344555555443
No 81
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.48 E-value=4.3e-13 Score=101.60 Aligned_cols=115 Identities=8% Similarity=-0.058 Sum_probs=92.5
Q ss_pred HHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 78 ALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 78 a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
.+.++|..++++.++|..|... +++++|+.+|++|++ +.++.+++++|.+|.. ..++++|+.+|+++++.
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKK----GDYPTAMRHYNEAVKRDPENAILYSNRAACLTK----LMEFQRALDDCDTCIRL 76 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh----hccHHHHHHHHHHHHHh
Confidence 3446788888888888888865 577889999988874 5788888889988888 44558899999988876
Q ss_pred --CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 156 --LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLL 204 (282)
Q Consensus 156 --g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y 204 (282)
.++.+++++|.+|.. .+++++|+.+|+++++. +++.+..+|+.|+
T Consensus 77 ~p~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 DSKFIKGYIRKAACLVA----MREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 678888999998888 88899999999988764 5788888888764
No 82
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.48 E-value=2e-13 Score=131.84 Aligned_cols=156 Identities=9% Similarity=-0.090 Sum_probs=139.2
Q ss_pred CchhhHHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHH
Q 023425 63 RLIPLLKTAKENFELAL--------EADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRL 132 (282)
Q Consensus 63 ~~~~~~~~A~~~~~~a~--------~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y 132 (282)
...+++++|+..|++++ +.+|+++.+++.+|.++... .++++|+..|++++ +++++.+++++|.+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDL----GDVAKATRKLDDLAERVGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhc----CCHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 34577999999999999 88999999999999999865 57899999999998 578999999999999
Q ss_pred hcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC
Q 023425 133 RVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGV 208 (282)
Q Consensus 133 ~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~ 208 (282)
.. ..++++|+..|++|++. +++.++++||.+|.. .+++++ +.+|++|++. .++.+++++|.+|..
T Consensus 478 ~~----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~----~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~-- 546 (681)
T 2pzi_A 478 LL----TGDYDSATKHFTEVLDTFPGELAPKLALAATAEL----AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA-- 546 (681)
T ss_dssp HH----HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred HH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH--
Confidence 98 45559999999999987 789999999999999 899999 9999999875 679999999999998
Q ss_pred CCcccHHHHHHHHHHHHH------HHchhchhc
Q 023425 209 QVPECLTKLNAKRVSAAK------KARANLESN 235 (282)
Q Consensus 209 g~~~~~~~A~~~~~~a~~------~a~~~lg~~ 235 (282)
.+++++|+.+|+++.+ .+++++|..
T Consensus 547 --~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~ 577 (681)
T 2pzi_A 547 --EGDRVGAVRTLDEVPPTSRHFTTARLTSAVT 577 (681)
T ss_dssp --TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence 8999999999999975 577777744
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.46 E-value=5.1e-13 Score=104.18 Aligned_cols=132 Identities=8% Similarity=-0.003 Sum_probs=108.2
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.++.++|++.+.+++...+ ......+..+..+...+++++|+.+|+++++.+|+++.+++.||.+|... .++++|
T Consensus 10 ~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~----~~~~~A 84 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE----ENTDKA 84 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHH
T ss_pred cChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CchHHH
Confidence 4678999999999887444 33444555555556668899999999999999999999999999999976 578999
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHH-HHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFY-YIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~-~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
+.+|+++++ +++++++++||.+|...+.. ++|.. |+++|++. +++.++..++.++..
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVT----DGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS----SSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 999999985 67999999999999875444 55554 56899886 799999988988765
No 84
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=8.9e-12 Score=108.29 Aligned_cols=207 Identities=11% Similarity=-0.057 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhcCC----------C----chhhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHhc
Q 023425 34 KKAMELIAKGWSALKEVDRVIDYCELNDR----------R----LIPLLKTAKENFELALE-ADNSNTHARYWLSKLHLK 98 (282)
Q Consensus 34 ~~A~e~~~~~~~~~~~~~~~~~~~~~~~~----------~----~~~~~~~A~~~~~~a~~-~~~g~~~a~~~Lg~~~~~ 98 (282)
++|+..|.+++...+... ...+..+... + ..+.+++|+..|++|++ .+|+++.++..+|.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~-~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHP-DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 788888988887554322 2222222111 1 11235899999999999 699999999999999986
Q ss_pred CCCCCcCHHHHHHHHHHHHh--CCCHH-HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC
Q 023425 99 YHVPGACKAMGAALLVDAAN--MGDPD-AQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDC 173 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~--~g~~~-A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g 173 (282)
. .+.++|...|+++++ +.+++ ++.++|.++... .++++|+..|++|++. .+...+...+.+...
T Consensus 112 ~----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~--- 180 (308)
T 2ond_A 112 R----MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA----EGIKSGRMIFKKAREDARTRHHVYVTAALMEYY--- 180 (308)
T ss_dssp T----TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH----HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH---
T ss_pred c----CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---
Confidence 5 477999999999996 45666 899999998874 4459999999999987 345555555555322
Q ss_pred CccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH----------Hchhchh--ccCCC
Q 023425 174 VKKDIASALWCFHRASE--KGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK----------ARANLES--NLMNP 239 (282)
Q Consensus 174 ~~~d~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------a~~~lg~--~~~~~ 239 (282)
..+++++|+.+|+++++ ..++.++..++.++.. .+++++|...|++++.. .+..++. ...++
T Consensus 181 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 15889999999999977 4679999999999987 78999999999999883 1222332 25678
Q ss_pred HHHHHHHHHHHHHhccH
Q 023425 240 VEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 240 ~~~A~~~~~~Aa~~g~~ 256 (282)
.+.|...++++.+....
T Consensus 257 ~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 257 LASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHccc
Confidence 99999999999987653
No 85
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.45 E-value=1.6e-12 Score=122.46 Aligned_cols=145 Identities=19% Similarity=0.144 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|+++.+++.+|.++... .++++|+.+|+++++ +.++.++++||.+|... .+++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~ 74 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGM----GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ----QRHA 74 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT----TCHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHH
Confidence 3566777777777777777777777777776644 456777777777764 35667777777777663 3347
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCc---ccHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVP---ECLTK 216 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~---~~~~~ 216 (282)
+|+.+|+++++. +++.++++||.+|.. .+++++|+.+|+++++. +++.+++++|.++.. . +++++
T Consensus 75 ~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~g~~~~ 146 (568)
T 2vsy_A 75 EAAVLLQQASDAAPEHPGIALWLGHALED----AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR----LCDWRALDV 146 (568)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCTTHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhccccHHH
Confidence 777777777665 566677777777766 66777777777776654 456667777777765 4 66667
Q ss_pred HHHHHHHHHH
Q 023425 217 LNAKRVSAAK 226 (282)
Q Consensus 217 A~~~~~~a~~ 226 (282)
|..+|+++.+
T Consensus 147 A~~~~~~al~ 156 (568)
T 2vsy_A 147 LSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777776665
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.45 E-value=2.8e-12 Score=110.82 Aligned_cols=189 Identities=13% Similarity=0.040 Sum_probs=142.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Q 023425 35 KAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLV 114 (282)
Q Consensus 35 ~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~ 114 (282)
+|.+++.++-..++...+.+.+. . ...+.++++|+.+|+++. .+|... .++++|+.+|.
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~~~~--~-~~~~~~~~~A~~~~~~a~--------------~~~~~~----g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFMKLF--S-GSDSYKFEEAADLCVQAA--------------TIYRLR----KELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHHHHH--S-CCSHHHHHHHHHHHHHHH--------------HHHHHT----TCTHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcchhc--C-CCCCccHHHHHHHHHHHH--------------HHHHHc----CCHHHHHHHHH
Confidence 56777777766665432222111 1 001345999999999993 344433 46799999999
Q ss_pred HHHhC----CC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCc-cC
Q 023425 115 DAANM----GD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LH----PGALYLLGTVYLTGDCVK-KD 177 (282)
Q Consensus 115 ~Aa~~----g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~g~g~~-~d 177 (282)
+|++. |+ +.++.++|.+|...+ ++++|+.+|++|++. |+ +.++.+||.+|.. . ++
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g----~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~----~lg~ 133 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGG----NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN----DLHD 133 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hhcC
Confidence 99863 44 568999999999844 559999999999875 44 4688999999998 7 99
Q ss_pred HHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH-------------Hchhchh--
Q 023425 178 IASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK-------------ARANLES-- 234 (282)
Q Consensus 178 ~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------a~~~lg~-- 234 (282)
+++|+.+|++|++. ++ ..++.++|.+|.. .+++++|+.+|+++... .+.++|.
T Consensus 134 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 209 (292)
T 1qqe_A 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ 209 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence 99999999999874 22 4678999999998 89999999999999872 2456674
Q ss_pred ccCCCHHHHHHHHHHHHHhccH
Q 023425 235 NLMNPVEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 235 ~~~~~~~~A~~~~~~Aa~~g~~ 256 (282)
...+++++|+.+|+++.+..+.
T Consensus 210 ~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 210 LAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHTTCHHHHHHHHHGGGCC---
T ss_pred HHcCCHHHHHHHHHHHHhhCCC
Confidence 3688999999999999876543
No 87
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.43 E-value=2.7e-13 Score=106.26 Aligned_cols=114 Identities=11% Similarity=0.015 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHH
Q 023425 69 KTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAF 146 (282)
Q Consensus 69 ~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~ 146 (282)
-.+-..|+++++.+|+++.+++.+|.++... .++++|+.+|++++ ++.++.++++||.+|... .++++|+
T Consensus 19 ~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~----g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~----g~~~~Ai 90 (151)
T 3gyz_A 19 INSGATLKDINAIPDDMMDDIYSYAYDFYNK----GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK----EQFQQAA 90 (151)
T ss_dssp HHTSCCTGGGCCSCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHH
T ss_pred HHCCCCHHHHhCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----ccHHHHH
Confidence 3344567788889999999999999999866 57799999999997 568999999999999984 4459999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCH
Q 023425 147 YYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHA 194 (282)
Q Consensus 147 ~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~ 194 (282)
.+|++|+.. +++.+++++|.+|.. .+++++|+.+|++|++....
T Consensus 91 ~~~~~al~l~P~~~~~~~~lg~~~~~----lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 91 DLYAVAFALGKNDYTPVFHTGQCQLR----LKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Confidence 999999887 789999999999999 99999999999999887543
No 88
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=6.1e-12 Score=99.07 Aligned_cols=150 Identities=16% Similarity=0.074 Sum_probs=125.9
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++++.+++...+. .....+..+......+++++|+.+|+++++..|.++.+++.+|.++... .++++
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~ 94 (186)
T 3as5_A 20 KAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV----QKYDL 94 (186)
T ss_dssp HHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHHH
T ss_pred HhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----cCHHH
Confidence 356799999999988764332 2333444444445567899999999999999999999999999999865 57799
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
|+.+|+++.+ +.++.+++.+|.++.. ..++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+
T Consensus 95 A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~ 166 (186)
T 3as5_A 95 AVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ----MGRHEEALPH 166 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH----cCCHHHHHHH
Confidence 9999999985 5789999999999998 45559999999999987 578999999999999 8999999999
Q ss_pred HHHHHHc
Q 023425 185 FHRASEK 191 (282)
Q Consensus 185 ~~~A~~~ 191 (282)
|+++++.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9999764
No 89
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.42 E-value=2.7e-12 Score=97.12 Aligned_cols=96 Identities=11% Similarity=-0.121 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++.+|.++.+++++|.+|... .++++|+..|++|++ +.++.+++++|.+|.. ..++
T Consensus 26 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~~~~ 97 (126)
T 4gco_A 26 KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL----MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA----MREW 97 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh----ccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----CCCH
Confidence 35599999999999999999999999999999976 578999999999985 6799999999999999 4555
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVY 168 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y 168 (282)
++|+.+|+++++. +++++...|+.++
T Consensus 98 ~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 98 SKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999987 7999999999875
No 90
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=6.3e-12 Score=109.23 Aligned_cols=179 Identities=8% Similarity=-0.015 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHhcCCCCCcCHHHHHH
Q 023425 33 NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTH-ARYWLSKLHLKYHVPGACKAMGAA 111 (282)
Q Consensus 33 ~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~-a~~~Lg~~~~~~~~~~~~~~~A~~ 111 (282)
.++|++.|.+++..+.+.........+......+++++|...|+++++.+|.++. ++..+|.++... ++.++|..
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~A~~ 155 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA----EGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH----HCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh----cCHHHHHH
Confidence 3899999999998544333344444444444557899999999999999999997 999999998765 56799999
Q ss_pred HHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 023425 112 LLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 112 ~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
.|++|++. .+...+...+.+.... ..++++|+..|+++++. .++.++..+|.++.. .+++++|+.+|++
T Consensus 156 ~~~~a~~~~p~~~~~~~~~a~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~ 228 (308)
T 2ond_A 156 IFKKAREDARTRHHVYVTAALMEYYC---SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFER 228 (308)
T ss_dssp HHHHHHTSTTCCTHHHHHHHHHHHHT---SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 99999964 4566666555553321 34569999999999886 789999999999988 8999999999999
Q ss_pred HHHc------CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 188 ASEK------GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 188 A~~~------g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
|+.. .....+..++.++.. .++.+.|...++++.+
T Consensus 229 al~~~~l~p~~~~~l~~~~~~~~~~----~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFLAFESN----IGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 9995 245678888888887 7889999999999876
No 91
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.40 E-value=1.6e-11 Score=106.82 Aligned_cols=187 Identities=13% Similarity=0.009 Sum_probs=139.6
Q ss_pred hhhhhhhhHHhhhhhhhcchhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCC
Q 023425 4 QISKASTLKSAALGLLQSNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADN 83 (282)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 83 (282)
.+..|..++..+...+.+. ... ..+++++|++.|.++.. .+.. .+++++|+.+|+++++..+
T Consensus 6 ~~~eA~~~~~~a~k~~~~~--~~~-~~~~~~~A~~~~~~a~~--------~~~~-------~g~~~~A~~~~~~al~~~~ 67 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKTS--FMK-WKPDYDSAASEYAKAAV--------AFKN-------AKQLEQAKDAYLQEAEAHA 67 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCC--SSS-CSCCHHHHHHHHHHHHH--------HHHH-------TTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcccc--ccC-CCCCHHHHHHHHHHHHH--------HHHH-------cCCHHHHHHHHHHHHHHHH
Confidence 4455666666666554431 111 25789999998887632 2222 2459999999999988643
Q ss_pred C------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh----CCC----HHHHHHHHHHHhcCCCCcCCHHHHHHHH
Q 023425 84 S------NTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN----MGD----PDAQYELGCRLRVENDYVQSDQQAFYYI 149 (282)
Q Consensus 84 g------~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~ 149 (282)
. -+.++.++|.+|... .++++|+.+|++|++ .|+ ..++.++|.+|.. +. +++|+.+|
T Consensus 68 ~~~~~~~~a~~~~~lg~~~~~~----g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~----~~~A~~~~ 138 (307)
T 2ifu_A 68 NNRSLFHAAKAFEQAGMMLKDL----QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD----LSKAVHLY 138 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT----TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC----HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC----HHHHHHHH
Confidence 2 245888999999865 466999999999975 344 4678899999976 44 49999999
Q ss_pred HHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCccc
Q 023425 150 EKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPEC 213 (282)
Q Consensus 150 ~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~ 213 (282)
++|++. ++ ..++.++|.+|.. .+++++|+.+|+++++. +. ..++.++|.++.. .++
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~----~g~ 210 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH----RAD 210 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTC
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----cCC
Confidence 999875 32 5788999999998 89999999999999773 32 4478888999987 788
Q ss_pred HHHHHHHHHHHH
Q 023425 214 LTKLNAKRVSAA 225 (282)
Q Consensus 214 ~~~A~~~~~~a~ 225 (282)
+++|..+|+++.
T Consensus 211 ~~~A~~~~~~al 222 (307)
T 2ifu_A 211 YVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999886
No 92
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.40 E-value=7.7e-12 Score=108.80 Aligned_cols=183 Identities=17% Similarity=0.058 Sum_probs=143.1
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++++.++.+..... ..+..+++++|..+|.++. .+|... .++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a~--------------~~~~~~----g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKAA--------------VAFKNA----KQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHHH--------------HHHHHT----TCHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHHH--------------HHHHHc----CCHHHH
Confidence 356889999999887644421 1222478999999999883 344433 578999
Q ss_pred HHHHHHHHhC----CC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCC
Q 023425 110 AALLVDAANM----GD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LH----PGALYLLGTVYLTGDC 173 (282)
Q Consensus 110 ~~~~~~Aa~~----g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~g~g 173 (282)
+.+|.+|++. ++ ..++.++|.+|...+.. ++|+.+|++|++. |+ ..++.+||.+|..
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~----~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~--- 128 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM----PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP--- 128 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG----GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc---
Confidence 9999999853 44 45889999999985544 9999999999875 44 4678899999964
Q ss_pred CccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------------Hchhch
Q 023425 174 VKKDIASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------------ARANLE 233 (282)
Q Consensus 174 ~~~d~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------a~~~lg 233 (282)
+++++|+.+|++|++. ++ ..++.++|.+|.. .+++++|+.+|++++.. .+.++|
T Consensus 129 --g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 129 --LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 7899999999999874 32 5689999999998 89999999999999872 344555
Q ss_pred hc--cCCCHHHHHHHHHHHHHhc
Q 023425 234 SN--LMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 234 ~~--~~~~~~~A~~~~~~Aa~~g 254 (282)
.. ..+++++|+.+|+++. ..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~ 224 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SI 224 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TS
T ss_pred HHHHHcCCHHHHHHHHHHHh-CC
Confidence 44 5589999999999998 54
No 93
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.39 E-value=1.4e-12 Score=104.02 Aligned_cols=146 Identities=9% Similarity=-0.082 Sum_probs=120.2
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcC-CCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG-DPDAQYELGCRLRVE-NDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~g-~~~~~d~~ 143 (282)
+++++|+..|+++++.+|+++.+++.+|.++... .++++|+..|+++++.. ++.....++.+...+ ... .
T Consensus 20 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~----g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~----~ 91 (176)
T 2r5s_A 20 GEHAQALNVIQTLSDELQSRGDVKLAKADCLLET----KQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAE----S 91 (176)
T ss_dssp TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT----TCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTS----C
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC----CCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhccc----c
Confidence 4599999999999999999999999999999966 57799999999997533 676666666553321 111 3
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCcccHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG----HAGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g----~~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
.|+..|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++.. ++.++.+||.++.. .++.++|
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~A 163 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQ----VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA----LGQGNAI 163 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH----HCSSCHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH----hCCCCcH
Confidence 589999999987 689999999999999 999999999999999875 26699999999997 6777778
Q ss_pred HHHHHHHHHH
Q 023425 218 NAKRVSAAKK 227 (282)
Q Consensus 218 ~~~~~~a~~~ 227 (282)
+.+|+++...
T Consensus 164 ~~~y~~al~~ 173 (176)
T 2r5s_A 164 ASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777653
No 94
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.38 E-value=7.1e-12 Score=117.98 Aligned_cols=159 Identities=13% Similarity=-0.005 Sum_probs=118.4
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.+.+++.... ......+..+..+...+++++|+.+|+++++.+|+++.++++||.+|... .++++|
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ----QRHAEA 76 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 4678889999988876433 23344455555555567899999999999999999999999999999976 578999
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCc---cCHHHHH
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVK---KDIASAL 182 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~---~d~~~A~ 182 (282)
+.+|+++++ ++++.++++||.+|.. ..++++|+.+|+++.+. +++.++.++|.+|.. . +++++|+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~g~~~~A~ 148 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALED----AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR----LCDWRALDVLS 148 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCTTHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhccccHHHHH
Confidence 999999985 5789999999999999 44559999999999987 689999999999998 7 9999999
Q ss_pred HHHHHHHHcC--CHHHHHHHH
Q 023425 183 WCFHRASEKG--HAGAAIAYG 201 (282)
Q Consensus 183 ~~~~~A~~~g--~~~a~~~Lg 201 (282)
.+|+++++.+ +..++..|+
T Consensus 149 ~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 149 AQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHhcCCcccChHHHhC
Confidence 9999998864 455566565
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.37 E-value=5.7e-12 Score=108.75 Aligned_cols=156 Identities=9% Similarity=-0.064 Sum_probs=124.0
Q ss_pred HHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHh
Q 023425 56 YCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLR 133 (282)
Q Consensus 56 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~ 133 (282)
+..+......+++++|+..|+++++.+|+++.+++.||.++... ++.++|+.+|+++.. +........++..+.
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~----g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIAL----NRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT----TCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHC----CCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 33333344456799999999999999999999999999999876 577999999999864 444555555666565
Q ss_pred cCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CC--HHHHHHHHHHHHcC
Q 023425 134 VENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GH--AGAAIAYGSLLLRG 207 (282)
Q Consensus 134 ~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~--~~a~~~Lg~~y~~g 207 (282)
..+.. ..|+..|++++.. +++.++++||.+|.. .+++++|+..|++++.. ++ +.+..+||.+|..
T Consensus 197 ~~~~~----~~a~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~- 267 (287)
T 3qou_A 197 XQAAD----TPEIQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA- 267 (287)
T ss_dssp HHHTS----CHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH-
T ss_pred hhccc----CccHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH-
Confidence 54444 6789999999876 789999999999999 89999999999999885 34 7899999999987
Q ss_pred CCCcccHHHHHHHHHHHHHH
Q 023425 208 VQVPECLTKLNAKRVSAAKK 227 (282)
Q Consensus 208 ~g~~~~~~~A~~~~~~a~~~ 227 (282)
.++.+.|..+|+++...
T Consensus 268 ---~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 268 ---LGTGDALASXYRRQLYA 284 (287)
T ss_dssp ---HCTTCHHHHHHHHHHHH
T ss_pred ---cCCCCcHHHHHHHHHHH
Confidence 66777777777777553
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.34 E-value=2.3e-11 Score=100.79 Aligned_cols=149 Identities=12% Similarity=-0.046 Sum_probs=113.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCH---HHHHHHHHHHhcCC
Q 023425 65 IPLLKTAKENFELALEADNSNT---HARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDP---DAQYELGCRLRVEN 136 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~---~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~---~A~~~Lg~~y~~g~ 136 (282)
.+++++|+..|+++++..|.++ .+++.+|.+|... +++++|+..|+++++ ++++ .|++.+|.++...+
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~----~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN----ADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD 92 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhh
Confidence 3569999999999998888764 7899999999976 678999999999985 4444 48999998886411
Q ss_pred --------------CCcCCHHHHHHHHHHHHHc--CCHHHH-----------------HHHHHHHhcCCCCccCHHHHHH
Q 023425 137 --------------DYVQSDQQAFYYIEKAVDQ--LHPGAL-----------------YLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 137 --------------~~~~d~~~A~~~~~kAa~~--g~~~A~-----------------~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
.-..++++|+..|+++++. +++.+. +.+|.+|.. .+++++|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~ 168 (225)
T 2yhc_A 93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE----RGAWVAVVN 168 (225)
T ss_dssp C--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCcHHHHHH
Confidence 0134578999999999886 343332 567888888 888999999
Q ss_pred HHHHHHHcC--C---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 184 CFHRASEKG--H---AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 184 ~~~~A~~~g--~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
.|+++++.. + +.+++.+|.+|.. .+++++|+.+++++.
T Consensus 169 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~----~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 169 RVEGMLRDYPDTQATRDALPLMENAYRQ----MQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCCCccHHHHHHHHHHHHH----cCCcHHHHHHHHHHH
Confidence 999988753 3 3678889999888 677776666665543
No 97
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.32 E-value=5.3e-12 Score=98.18 Aligned_cols=110 Identities=12% Similarity=0.031 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHH
Q 023425 70 TAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFY 147 (282)
Q Consensus 70 ~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~ 147 (282)
.+...|+++++.+|+++.+++.+|.++... .++++|+..|++++ ++.++.+++++|.++.. ..++++|+.
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~ 76 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQS----GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA----MGQYDLAIH 76 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHc----CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH----HhhHHHHHH
Confidence 334568889989999999999999999866 57899999999997 46799999999999998 445599999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 148 YIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 148 ~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+|++++.. +++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 77 ~~~~al~l~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 77 SYSYGAVMDIXEPRFPFHAAECLLQ----XGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 99999886 689999999999999 89999999999999775
No 98
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.30 E-value=1.1e-10 Score=100.43 Aligned_cols=145 Identities=12% Similarity=0.008 Sum_probs=103.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----CC----HHHHHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTH------ARYWLSKLHLKYHVPGACKAMGAALLVDAANM----GD----PDAQYELGC 130 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~------a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~----~~A~~~Lg~ 130 (282)
.+++++|+..|+++++..+..+. .++.+|.++... .++++|+.+|++|.+. .+ ..+++++|.
T Consensus 88 ~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 2qfc_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK----VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS----SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45688888888888876665543 355677776644 4778888888888752 11 458888888
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHHc-----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--------C
Q 023425 131 RLRVENDYVQSDQQAFYYIEKAVDQ-----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--------H 193 (282)
Q Consensus 131 ~y~~g~~~~~d~~~A~~~~~kAa~~-----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--------~ 193 (282)
+|.. ..++++|+.+|++|.+. ++ +.+++++|.+|.. .+++++|+.+|++|++.. .
T Consensus 164 ~y~~----~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 164 IYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHH----cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 8888 44558888888888732 22 2588888888888 888888888888886531 1
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHH-HHHHHHHH
Q 023425 194 AGAAIAYGSLLLRGVQVPECLTKL-NAKRVSAA 225 (282)
Q Consensus 194 ~~a~~~Lg~~y~~g~g~~~~~~~A-~~~~~~a~ 225 (282)
+.+++++|.+|.. .+++++| ..+|++|.
T Consensus 236 ~~~~~~lg~~y~~----~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRK----LEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHH----TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCcHHHHHHHHHHHH
Confidence 6678888888887 6666666 55555443
No 99
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.28 E-value=2.8e-10 Score=97.98 Aligned_cols=146 Identities=12% Similarity=0.027 Sum_probs=116.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHH------HHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----CC----HHHHHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTHA------RYWLSKLHLKYHVPGACKAMGAALLVDAANM----GD----PDAQYELGC 130 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a------~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~----~~A~~~Lg~ 130 (282)
.+++++|+..|+++++..+.++.- ++.+|.++... .++++|+.+|++|.+. ++ ..++.+||.
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK----VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTS----SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcc----cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 467999999999999877667662 22477777643 5789999999999873 22 447999999
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----C----C
Q 023425 131 RLRVENDYVQSDQQAFYYIEKAVDQ---------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----G----H 193 (282)
Q Consensus 131 ~y~~g~~~~~d~~~A~~~~~kAa~~---------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g----~ 193 (282)
+|.. ..++++|+.+|++|.+. ..+.+++++|.+|.. .+++++|+.++++|++. + .
T Consensus 164 ~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 164 IYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 9998 44559999999999852 235688999999999 99999999999999763 2 2
Q ss_pred HHHHHHHHHHHHcCCCCcc-cHHHHHHHHHHHHH
Q 023425 194 AGAAIAYGSLLLRGVQVPE-CLTKLNAKRVSAAK 226 (282)
Q Consensus 194 ~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~ 226 (282)
+.+++++|.+|.. .+ ++++|..+|++|..
T Consensus 236 ~~~~~~lg~~~~~----~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 236 GQLYYQRGECLRK----LEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHH----TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCCcHHHHHHHHHHHHH
Confidence 7889999999997 55 46888888888876
No 100
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.28 E-value=6.1e-12 Score=111.16 Aligned_cols=145 Identities=13% Similarity=0.006 Sum_probs=125.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCC---------------HHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGD---------------PDAQYE 127 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~---------------~~A~~~ 127 (282)
..++++|+..|+++++.+|.++.+++.+|.++... .++++|+.+|++|++ +.+ +.++++
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~----g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKE----GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHH
Confidence 46788899999999988899999999999999965 578999999999985 445 689999
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSL 203 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~ 203 (282)
||.+|.. ..++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|++|++. .++.++.+|+.+
T Consensus 202 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 202 LAMCHLK----LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999 45559999999999987 689999999999999 99999999999999875 579999999999
Q ss_pred HHcCCCCcccHHHH-HHHHHHHH
Q 023425 204 LLRGVQVPECLTKL-NAKRVSAA 225 (282)
Q Consensus 204 y~~g~g~~~~~~~A-~~~~~~a~ 225 (282)
+.. .+++++| ...|++..
T Consensus 274 ~~~----~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQR----IRRQLAREKKLYANMF 292 (336)
T ss_dssp HHH----HHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHH
Confidence 998 7777776 34555543
No 101
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.27 E-value=1.1e-10 Score=94.93 Aligned_cols=124 Identities=10% Similarity=0.066 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYL 163 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~ 163 (282)
...++.+|..+... .++++|+..|++++++ ++.+++++|.+|.. ..++++|+.+|++++.. .++.++++
T Consensus 6 ~~~~~~~g~~~~~~----~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~ 76 (213)
T 1hh8_A 6 AISLWNEGVLAADK----KDWKGALDAFSAVQDP-HSRICFNIGCMYTI----LKNMTEAEKAFTRSINRDKHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHTSSSC-CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHh----CCHHHHHHHHHHHcCC-ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 34567777777754 5678888888888644 67888888888877 44458888888888775 57788888
Q ss_pred HHHHHhcCCCCccCHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 164 LGTVYLTGDCVKKDIASALWCFHRASEKG------------------HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 164 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
+|.+|.. .+++++|+.+|+++++.. .+.+++++|.+|.. .+++++|..+|+++.
T Consensus 77 lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 77 RGMLYYQ----TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred HHHHHHH----cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH----ccCHHHHHHHHHHHH
Confidence 8888887 788888888888887742 23778888888887 677777777777665
Q ss_pred H
Q 023425 226 K 226 (282)
Q Consensus 226 ~ 226 (282)
.
T Consensus 149 ~ 149 (213)
T 1hh8_A 149 S 149 (213)
T ss_dssp T
T ss_pred H
Confidence 4
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.25 E-value=2.7e-10 Score=84.47 Aligned_cols=114 Identities=25% Similarity=0.252 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++.+ +.++.+++.+|.++.. ..+++
T Consensus 15 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 86 (136)
T 2fo7_A 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ----GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYD 86 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHH
T ss_pred CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh----cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH----hcCHH
Confidence 4588888888888888888888888888887754 467888888888874 4567788888888877 34458
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+|+.+|.++... .++.+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 87 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 87 EAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHH----HccHHHHHHHHHHHHcc
Confidence 888888888775 467788888888887 78888888888887654
No 103
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.25 E-value=8.4e-11 Score=93.19 Aligned_cols=120 Identities=13% Similarity=0.033 Sum_probs=101.9
Q ss_pred CCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHH-HhcCCCC
Q 023425 62 RRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCR-LRVENDY 138 (282)
Q Consensus 62 ~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~-y~~g~~~ 138 (282)
....+++++|+..|+++++.+|.++.+++.+|.+|... .++++|+.+|+++++ +.++.+++.+|.+ +..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~---- 91 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ----NDYSNSLLAYRQALQLRGENAELYAALATVLYYQ---- 91 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH----
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----
Confidence 34457799999999999999999999999999999966 578999999999974 6799999999999 655
Q ss_pred cCCH--HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 139 VQSD--QQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 139 ~~d~--~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
..++ ++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++...
T Consensus 92 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 92 ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM----QANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCC
T ss_pred cCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCC
Confidence 3333 8999999999986 689999999999999 8999999999999988643
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.24 E-value=3.1e-10 Score=93.96 Aligned_cols=158 Identities=13% Similarity=0.045 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCC---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC
Q 023425 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGD---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LH 157 (282)
Q Consensus 85 ~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~ 157 (282)
.+.+++.+|..+... +++++|+..|+++++ +.+ +++++.+|.+|.. ..++++|+..|+++++. ++
T Consensus 3 ~~~~~~~~a~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 3 PPNEIYATAQQKLQD----GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp CHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCC
Confidence 578899999998865 688999999999986 333 4799999999999 55569999999999986 33
Q ss_pred H---HHHHHHHHHHhcC--------------CCCccCHHHHHHHHHHHHHcC--CHHH-----------------HHHHH
Q 023425 158 P---GALYLLGTVYLTG--------------DCVKKDIASALWCFHRASEKG--HAGA-----------------AIAYG 201 (282)
Q Consensus 158 ~---~A~~~Lg~~y~~g--------------~g~~~d~~~A~~~~~~A~~~g--~~~a-----------------~~~Lg 201 (282)
+ .|++.+|.+|... ....+++++|+..|+++++.. ++.+ .+.+|
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a 154 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA 154 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 5899999998741 012578999999999998853 3222 26788
Q ss_pred HHHHcCCCCcccHHHHHHHHHHHHH---------HHchhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 202 SLLLRGVQVPECLTKLNAKRVSAAK---------KARANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 202 ~~y~~g~g~~~~~~~A~~~~~~a~~---------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
.+|.. .++++.|+..|+++++ .+++.+|. ...+++++|+.+++++...+
T Consensus 155 ~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 155 EYYTE----RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHH----HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHH----cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 88888 8999999999999986 35667774 47889999999998877655
No 105
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.23 E-value=3.5e-11 Score=92.39 Aligned_cols=107 Identities=12% Similarity=-0.002 Sum_probs=87.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHH
Q 023425 73 ENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIE 150 (282)
Q Consensus 73 ~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~ 150 (282)
..|+++++.+|+++.+++.+|..+... .++++|+.+|++++ ++.++.+++.||.+|.. ..++++|+.+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~ 76 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQA----GKWDDAQKIFQALCMLDHYDARYFLGLGACRQS----LGLYEQALQSYS 76 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHH----ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----HhhHHHHHHHHH
Confidence 467778888888889999999998865 57799999999987 45788999999999988 444599999999
Q ss_pred HHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 151 KAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 151 kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+++.. .++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 77 ~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 77 YGALMDINEPRFPFHAAECHLQ----LGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 99886 688899999999998 89999999999998764
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.23 E-value=3.1e-10 Score=88.65 Aligned_cols=93 Identities=15% Similarity=-0.040 Sum_probs=80.2
Q ss_pred HHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHh
Q 023425 56 YCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLR 133 (282)
Q Consensus 56 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~ 133 (282)
+..+......+++++|+.+|+++++.+|.++.++++||.+|... .++++|+..|++|+ +++++.+++++|.+|.
T Consensus 40 ~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~----g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 40 YSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK----EQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 33333334456699999999999999999999999999999976 67899999999997 5789999999999999
Q ss_pred cCCCCcCCHHHHHHHHHHHHHcC
Q 023425 134 VENDYVQSDQQAFYYIEKAVDQL 156 (282)
Q Consensus 134 ~g~~~~~d~~~A~~~~~kAa~~g 156 (282)
..+. +++|+.+|+++++..
T Consensus 116 ~lg~----~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKA----PLKAKECFELVIQHS 134 (151)
T ss_dssp HTTC----HHHHHHHHHHHHHHC
T ss_pred HcCC----HHHHHHHHHHHHHhC
Confidence 9444 599999999999974
No 107
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=1.4e-09 Score=80.51 Aligned_cols=124 Identities=21% Similarity=0.182 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHH
Q 023425 87 HARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALY 162 (282)
Q Consensus 87 ~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~ 162 (282)
.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++.. ..++++|+.+|+++... .++.+++
T Consensus 2 ~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 73 (136)
T 2fo7_A 2 EAWYNLGNAYYKQ----GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHc----CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH----hcCHHHHHHHHHHHHHHCCCchHHHH
Confidence 4788899988865 577999999999975 5688999999999988 45569999999999876 5788999
Q ss_pred HHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 163 LLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 163 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+|.++.. .+++++|+.+|+++... .++.+++.+|.+|.. .+++++|..+++++..
T Consensus 74 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 74 NLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----HccHHHHHHHHHHHHc
Confidence 99999998 89999999999999875 468889999999987 6777776666666543
No 108
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.20 E-value=5.1e-11 Score=105.22 Aligned_cols=146 Identities=12% Similarity=-0.090 Sum_probs=115.0
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHH
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN---------------THARYWLSKL 95 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~---------------~~a~~~Lg~~ 95 (282)
.++++|++.+.+++. .........+..+..+...+++++|+..|++|++.+|.+ +.++++||.+
T Consensus 127 ~~~~~A~~~~~~a~~-~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSE-EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHH-HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554433 222233344445555555677999999999999999999 6999999999
Q ss_pred HhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC
Q 023425 96 HLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTG 171 (282)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g 171 (282)
|... .++++|+.+|++|++ +.++.+++++|.+|.. ..++++|+.+|+++++. +++.++..||.++..
T Consensus 206 ~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~- 276 (336)
T 1p5q_A 206 HLKL----QAFSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR- 276 (336)
T ss_dssp HHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-
T ss_pred HHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-
Confidence 9976 578999999999985 6799999999999999 44559999999999987 689999999999998
Q ss_pred CCCccCHHHH-HHHHHHHH
Q 023425 172 DCVKKDIASA-LWCFHRAS 189 (282)
Q Consensus 172 ~g~~~d~~~A-~~~~~~A~ 189 (282)
.+++++| ...|++..
T Consensus 277 ---~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 277 ---IRRQLAREKKLYANMF 292 (336)
T ss_dssp ---HHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHH
Confidence 8888888 45666554
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.20 E-value=2.9e-10 Score=92.41 Aligned_cols=114 Identities=14% Similarity=0.052 Sum_probs=99.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+..|++++ + .++.+++++|.+|... +++++|+.+|+++++ +.++.+++++|.+|.. ..++
T Consensus 19 ~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~ 87 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTIL----KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ----TEKY 87 (213)
T ss_dssp TTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCH
T ss_pred hCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cccH
Confidence 355999999999994 4 3899999999999976 578999999999985 6789999999999999 4455
Q ss_pred HHHHHHHHHHHHc--CC----------------HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 143 QQAFYYIEKAVDQ--LH----------------PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~----------------~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
++|+.+|+++.+. ++ +.+++++|.+|.. .+++++|+.+|+++++...
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCc
Confidence 9999999999985 23 3999999999999 8999999999999988754
No 110
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.19 E-value=5.2e-10 Score=89.85 Aligned_cols=146 Identities=16% Similarity=0.066 Sum_probs=112.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh----C----CCHHHHHHHHHHHhcCC
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN----M----GDPDAQYELGCRLRVEN 136 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~----~----g~~~A~~~Lg~~y~~g~ 136 (282)
.+++++|.+.++......+..+.+++.+|.++... .++++|+.+|+++.+ . ..+.++.++|.+|...
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~- 79 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFM----DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA- 79 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh----CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-
Confidence 35688888855555543336788999999999865 578999999999976 2 2457899999999984
Q ss_pred CCcCCHHHHHHHHHHHHHc----C-C----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC----HHHHHH
Q 023425 137 DYVQSDQQAFYYIEKAVDQ----L-H----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH----AGAAIA 199 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~----g-~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~----~~a~~~ 199 (282)
.++++|+.+|+++.+. + + +.++.++|.+|.. .+++++|+.+++++++. ++ ..++.+
T Consensus 80 ---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 152 (203)
T 3gw4_A 80 ---GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH----FGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152 (203)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4559999999999875 3 3 4578899999999 89999999999999753 43 335688
Q ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 200 YGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 200 Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+|.+|.. .+++++|..+++++.+
T Consensus 153 la~~~~~----~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 153 LGDLAQQ----EKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHH----CcCHHHHHHHHHHHHH
Confidence 9999987 6778777777766644
No 111
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.19 E-value=3.5e-10 Score=97.33 Aligned_cols=150 Identities=10% Similarity=0.007 Sum_probs=114.7
Q ss_pred cccchHHHHHHHHHHhhhhhH-----HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHh
Q 023425 29 LHSRNKKAMELIAKGWSALKE-----VDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN------THARYWLSKLHL 97 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~------~~a~~~Lg~~~~ 97 (282)
..+++++|++.+.+.+..... ......+..+......+++++|+.+|+++++..+.. ..+++++|.+|.
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 477899999999887763321 111222333333334468999999999998643333 568999999999
Q ss_pred cCCCCCcCHHHHHHHHHHHHh-----CCC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--------CHHH
Q 023425 98 KYHVPGACKAMGAALLVDAAN-----MGD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL--------HPGA 160 (282)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~Aa~-----~g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g--------~~~A 160 (282)
.. .++++|+.+|++|.+ +++ +.+++++|.+|.. ..++++|+.+|++|.+.. .+.+
T Consensus 167 ~~----~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 167 EN----GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HT----TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred Hc----CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 76 678999999999983 232 2699999999998 555599999999998751 2788
Q ss_pred HHHHHHHHhcCCCCccCHHHH-HHHHHHHHH
Q 023425 161 LYLLGTVYLTGDCVKKDIASA-LWCFHRASE 190 (282)
Q Consensus 161 ~~~Lg~~y~~g~g~~~d~~~A-~~~~~~A~~ 190 (282)
++++|.+|.. .+++++| ..+|++|..
T Consensus 239 ~~~lg~~y~~----~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRK----LEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHH----TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCcHHHHHHHHHHHHH
Confidence 9999999999 8999999 888999875
No 112
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.17 E-value=7.3e-10 Score=85.90 Aligned_cols=112 Identities=14% Similarity=-0.011 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++... .+++
T Consensus 27 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~----~~~~ 98 (166)
T 1a17_A 27 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT----ECYGYALGDATRAIELDKKYIKGYYRRAASNMAL----GKFR 98 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh----ccHH
Confidence 4477888888888777777777777787777754 466777777777764 45677777777777763 3347
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHH--HhcCCCCccCHHHHHHHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTV--YLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~--y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
+|+.+|+++.+. .++.++..++.+ +.. .+++++|+.++.++.
T Consensus 99 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 99 AALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHHcccchH
Confidence 777777777765 455666444333 555 566777777776653
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.17 E-value=4.3e-10 Score=96.85 Aligned_cols=166 Identities=8% Similarity=-0.055 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
.+....++... -|+++++++.+|..+... ++.++|+..|++++ +++++++++.||.++...++. ++|
T Consensus 102 ~~~l~~~l~~~---lp~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~----~~A 170 (287)
T 3qou_A 102 EEAIRALLDXV---LPREEELXAQQAMQLMQE----SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRS----EDA 170 (287)
T ss_dssp HHHHHHHHHHH---SCCHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH----HHH
T ss_pred HHHHHHHHHHH---cCCchhhHHHHHHHHHhC----CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCH----HHH
Confidence 34444555555 488999999999999876 57899999999997 578999999999999995554 999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 023425 146 FYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKR 221 (282)
Q Consensus 146 ~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 221 (282)
+.+|+++... ........++..+.. .++.+.|+..|+++++. +++.++++||.+|.. .+++++|+..|
T Consensus 171 ~~~l~~~~~~~p~~~~~~~~~~~~l~~----~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~~l 242 (287)
T 3qou_A 171 EAVLXTIPLQDQDTRYQGLVAQIELLX----QAADTPEIQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALELL 242 (287)
T ss_dssp HHHHTTSCGGGCSHHHHHHHHHHHHHH----HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHhCchhhcchHHHHHHHHHHHHh----hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHH
Confidence 9999999776 344555556666666 67778899999999875 689999999999998 89999999999
Q ss_pred HHHHH--------HHchhchhc--cCCCHHHHHHHHHHHHH
Q 023425 222 VSAAK--------KARANLESN--LMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 222 ~~a~~--------~a~~~lg~~--~~~~~~~A~~~~~~Aa~ 252 (282)
++++. .++.++|.. ..++.++|+.+|+++..
T Consensus 243 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 243 FGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99987 255667743 56677889999988864
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.15 E-value=5e-10 Score=96.40 Aligned_cols=150 Identities=11% Similarity=0.044 Sum_probs=114.2
Q ss_pred cccchHHHHHHHHHHhhhhhHH---H--HHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHh
Q 023425 29 LHSRNKKAMELIAKGWSALKEV---D--RVIDYCELNDRRLIPLLKTAKENFELALEADNSN------THARYWLSKLHL 97 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~------~~a~~~Lg~~~~ 97 (282)
..+++++|++.+.+........ . ...++..+......+++++|+.+|+++++..+.. ..++.+||.+|.
T Consensus 87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 3u3w_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 3688999999999887633211 1 1122223343444568999999999999843332 347899999998
Q ss_pred cCCCCCcCHHHHHHHHHHHHh----C-C----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C----CHHH
Q 023425 98 KYHVPGACKAMGAALLVDAAN----M-G----DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----L----HPGA 160 (282)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~Aa~----~-g----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g----~~~A 160 (282)
.. .++++|+.+|++|++ . + .+.+++++|.+|.. ..++++|+.++++|.+. + .+.+
T Consensus 167 ~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 167 EN----GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HT----TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred Hc----CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 76 578999999999984 1 2 34688999999999 55569999999999874 1 2789
Q ss_pred HHHHHHHHhcCCCCcc-CHHHHHHHHHHHHH
Q 023425 161 LYLLGTVYLTGDCVKK-DIASALWCFHRASE 190 (282)
Q Consensus 161 ~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~ 190 (282)
++++|.+|.. .+ ++++|+.+|++|+.
T Consensus 239 ~~~lg~~~~~----~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRK----LEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHH----TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hCCcHHHHHHHHHHHHH
Confidence 9999999998 77 57999999999975
No 115
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.15 E-value=6.9e-10 Score=82.84 Aligned_cols=108 Identities=16% Similarity=0.020 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHH
Q 023425 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGA 160 (282)
Q Consensus 85 ~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A 160 (282)
.+.+++.+|..+... +++++|+.+|+++++ ++++.+++++|.+|.. ..++++|+.+|+++++. .++.+
T Consensus 3 ~a~~~~~~g~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 74 (126)
T 3upv_A 3 KAEEARLEGKEYFTK----SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAIADCNKAIEKDPNFVRA 74 (126)
T ss_dssp HHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHH
Confidence 456677777777654 466777777777764 4567777777777776 33447777777777765 56777
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--------CHHHHHHHHHHH
Q 023425 161 LYLLGTVYLTGDCVKKDIASALWCFHRASEKG--------HAGAAIAYGSLL 204 (282)
Q Consensus 161 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--------~~~a~~~Lg~~y 204 (282)
++.+|.+|.. .+++++|+.+|+++++.. ++.+...|+.+.
T Consensus 75 ~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 75 YIRKATAQIA----VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 7777777777 777777777777776543 344555555443
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.15 E-value=1e-10 Score=92.97 Aligned_cols=149 Identities=11% Similarity=0.032 Sum_probs=117.3
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|+..+.+++...+ ......+..+......+++++|+..|+++++.+| ++.....++.+..... .+...
T Consensus 18 ~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~---~~~~~ 92 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ---AAESP 92 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH---HTSCH
T ss_pred HcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh---cccch
Confidence 35679999999999887443 3344455555555566789999999999999998 8887777776543211 11134
Q ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHhcCCCCccCHHHHH
Q 023425 109 GAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL----HPGALYLLGTVYLTGDCVKKDIASAL 182 (282)
Q Consensus 109 A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~g~g~~~d~~~A~ 182 (282)
|+..|++++ .+++++++++||.++...++ +++|+.+|+++++.. ++.++..||.+|.. .++.++|+
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~----~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~A~ 164 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGR----DEEALELLWNILKVNLGAQDGEVKKTFMDILSA----LGQGNAIA 164 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH----HCSSCHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccc----HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH----hCCCCcHH
Confidence 789999997 46899999999999999444 599999999999874 36699999999998 89999999
Q ss_pred HHHHHHHH
Q 023425 183 WCFHRASE 190 (282)
Q Consensus 183 ~~~~~A~~ 190 (282)
.+|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.14 E-value=9.8e-11 Score=100.52 Aligned_cols=175 Identities=12% Similarity=-0.007 Sum_probs=139.0
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHH-------HHHHhcCCCCCcCHHHHHHHHHHHHh--CCC--------------
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWL-------SKLHLKYHVPGACKAMGAALLVDAAN--MGD-------------- 121 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~L-------g~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~-------------- 121 (282)
++|...|...|.++++.+|+.+++|..+ +.++.... ...+++..+.++++ ++.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~----r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAW----YSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHH----HTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHH----HHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 5789999999999999999999999988 66655432 22667777888775 122
Q ss_pred -------HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 122 -------PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL--HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 122 -------~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
.+....++.++...++ +++|.+.|......+ ++ +++.+|.++.. .+++++|+.+|+++....
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~----y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~----~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGN----YADAMEALEAAPVAGSEHL-VAWMKAVVYGA----AERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTC----HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH----TTCHHHHHHHHTTGGGCS
T ss_pred ccccCCHhHHHHHHHHHHHHCCC----HHHHHHHHHHHHhcCCchH-HHHHHHHHHHH----cCCHHHHHHHHHHhhccC
Confidence 3445557788888444 499999998887653 45 89999999999 899999999999887765
Q ss_pred CH----HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH---------HHchhchhc--cCCCHHHHHHHHHHHHHhccH
Q 023425 193 HA----GAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK---------KARANLESN--LMNPVEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 193 ~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g~~ 256 (282)
++ .++++||.++.. .+++++|+.||+++.. .+++++|.. ..++.++|...|+++......
T Consensus 166 d~~~~~~a~~~LG~al~~----LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAAN----LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp CHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CcccHHHHHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 43 479999999998 8899999999999952 466777743 788999999999999998765
No 118
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.14 E-value=2e-09 Score=95.27 Aligned_cols=208 Identities=11% Similarity=-0.089 Sum_probs=120.6
Q ss_pred ccchHHHHHHHHHHhhhhhHHH----HHHHHHhhcCCCchhhHHHHHHHHHHHHHcCC--CCH----HHHHHHHHHHhcC
Q 023425 30 HSRNKKAMELIAKGWSALKEVD----RVIDYCELNDRRLIPLLKTAKENFELALEADN--SNT----HARYWLSKLHLKY 99 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--g~~----~a~~~Lg~~~~~~ 99 (282)
.+++++|++++.+++....... .......+......+++++|..+|+++++..+ +++ .+..++|.++...
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 4567777777777665433211 11222333333345667777777777776432 222 2356677777654
Q ss_pred CCCCcCHHHHHHHHHHHHhC----C------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-------CHHHHH
Q 023425 100 HVPGACKAMGAALLVDAANM----G------DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL-------HPGALY 162 (282)
Q Consensus 100 ~~~~~~~~~A~~~~~~Aa~~----g------~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g-------~~~A~~ 162 (282)
.++++|+.+|+++++. + ...++.++|.++...+ ++++|..+++++.+.. ...++.
T Consensus 107 ----G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 107 ----GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA----RLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 4667777777777642 1 2345667777777633 3477777777776641 245667
Q ss_pred HHHHHHhcCCCCccCHHHHHHHHHHHHHc----CCH-HH--HH--HHHHHHHcCCCCcccHHHHHHHHHHHHHH------
Q 023425 163 LLGTVYLTGDCVKKDIASALWCFHRASEK----GHA-GA--AI--AYGSLLLRGVQVPECLTKLNAKRVSAAKK------ 227 (282)
Q Consensus 163 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~~-~a--~~--~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------ 227 (282)
.+|.++.. .+++++|+.+++++... +.+ .. .. .++.++.. .++++.|..+++++...
T Consensus 179 ~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~ 250 (373)
T 1hz4_A 179 MLIQCSLA----RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNH 250 (373)
T ss_dssp HHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH----CCCHHHHHHHHHhCCCCCCCcch
Confidence 77777777 77777787777777543 221 11 11 22333444 56677777777666431
Q ss_pred ----Hchhch--hccCCCHHHHHHHHHHHHHh
Q 023425 228 ----ARANLE--SNLMNPVEKAKEQFEVAAQA 253 (282)
Q Consensus 228 ----a~~~lg--~~~~~~~~~A~~~~~~Aa~~ 253 (282)
.+..++ ....+++++|..+++++.+.
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 122333 23556777777777776654
No 119
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.14 E-value=7.6e-09 Score=91.44 Aligned_cols=211 Identities=9% Similarity=-0.097 Sum_probs=154.5
Q ss_pred cccchHHHHHHHHHHhhhhhHHH-----HHHHHHhhcCCCchhhHHHHHHHHHHHHHcC--------CCCHHHHHHHHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVD-----RVIDYCELNDRRLIPLLKTAKENFELALEAD--------NSNTHARYWLSKL 95 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~g~~~a~~~Lg~~ 95 (282)
..+++++|++++.+++....... .......+......+++++|+.+|+++++.. |..+.++.++|.+
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 65 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL 144 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence 36889999999999887443211 1122333444445577999999999998753 3345678889999
Q ss_pred HhcCCCCCcCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCHHHHH--
Q 023425 96 HLKYHVPGACKAMGAALLVDAANMG-------DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LHPGALY-- 162 (282)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~Aa~~g-------~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~~~A~~-- 162 (282)
+... .++++|..+++++.+.. ...++.++|.++.. ..++++|+.+++++... +.+....
T Consensus 145 ~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 145 LWAW----ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA----RGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHT----TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHh----cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 8865 57899999999998532 24688899999998 44559999999999764 3321111
Q ss_pred ---HHHHHHhcCCCCccCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------
Q 023425 163 ---LLGTVYLTGDCVKKDIASALWCFHRASEKGH------AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------ 227 (282)
Q Consensus 163 ---~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------ 227 (282)
.++.++.. .+++++|..+++++..... ..+...+|.++.. .+++++|..+++++...
T Consensus 217 ~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~ 288 (373)
T 1hz4_A 217 ANKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL----LGEFEPAEIVLEELNENARSLRL 288 (373)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCcc
Confidence 23445666 7999999999999876432 3357789999988 78999999999998762
Q ss_pred ------Hchhch--hccCCCHHHHHHHHHHHHHhcc
Q 023425 228 ------ARANLE--SNLMNPVEKAKEQFEVAAQAGC 255 (282)
Q Consensus 228 ------a~~~lg--~~~~~~~~~A~~~~~~Aa~~g~ 255 (282)
.+..+| ....+++++|..+|++|.+...
T Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 289 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 333445 2367899999999999987654
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.14 E-value=3.4e-09 Score=82.07 Aligned_cols=126 Identities=8% Similarity=-0.028 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHH
Q 023425 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGA 160 (282)
Q Consensus 85 ~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A 160 (282)
.+.+++.+|.++... .++++|+.+|+++++ +.++.+++++|.++.. ..++++|+.+|+++.+. .++.+
T Consensus 12 ~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 12 RAEELKTQANDYFKA----KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHH
Confidence 466788899998865 578999999999985 5689999999999998 45559999999999987 68999
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH--HHcCCCCcccHHHHHHHHHHHHH
Q 023425 161 LYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSL--LLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 161 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~--y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
++.+|.+|.. .+++++|+.+|+++++. .++.+...++.+ +.. .+++++|+.++.++..
T Consensus 84 ~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 84 YYRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHHcccchHH
Confidence 9999999999 89999999999999875 467777555544 655 6777777777766644
No 121
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.13 E-value=5.1e-09 Score=97.55 Aligned_cols=172 Identities=10% Similarity=-0.025 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhc-------CCCCCcC-----HHHHHHHHHHHHh---CCCHHHHHHHHHHHh
Q 023425 69 KTAKENFELALEADNSNTHARYWLSKLHLK-------YHVPGAC-----KAMGAALLVDAAN---MGDPDAQYELGCRLR 133 (282)
Q Consensus 69 ~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~-------~~~~~~~-----~~~A~~~~~~Aa~---~g~~~A~~~Lg~~y~ 133 (282)
..++..|++|+...|.++.+++.+|.++.. .+.. + .++|...|++|++ +.++..++.+|.++.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~--~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM--NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCC--HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccch--hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 477889999999999999999999999874 2211 1 2389999999985 578999999999998
Q ss_pred cCCCCcCCHHHHHHHHHHHHHcC--CH-HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC--HHHHHHHHHH-HHcC
Q 023425 134 VENDYVQSDQQAFYYIEKAVDQL--HP-GALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH--AGAAIAYGSL-LLRG 207 (282)
Q Consensus 134 ~g~~~~~d~~~A~~~~~kAa~~g--~~-~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~--~~a~~~Lg~~-y~~g 207 (282)
..+ ++++|...|+++++.. ++ .++..+|.++.. .+++++|+..|++|++... ...+...+.+ +..
T Consensus 333 ~~g----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~- 403 (530)
T 2ooe_A 333 SRM----KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC- 403 (530)
T ss_dssp HTT----CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH-
T ss_pred hcC----CHHHHHHHHHHHhCccccCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH-
Confidence 844 4599999999999973 44 588999999887 7899999999999998643 3444444444 222
Q ss_pred CCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 208 VQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 208 ~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
.+++++|...|+++++ ..+..++. ...++.++|+.+|++|+...
T Consensus 404 ---~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 404 ---SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp ---TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred ---cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 5789999999999987 34555563 36789999999999999974
No 122
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.13 E-value=4.9e-10 Score=84.54 Aligned_cols=77 Identities=21% Similarity=0.190 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC------
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH------ 193 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~------ 193 (282)
+.++.+||..++. ..++++|+.+|++|++. .++.+++++|.+|.. .+++++|+.+|++|++...
T Consensus 8 A~a~~~lG~~~~~----~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 8 AIAEKDLGNAAYK----QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE----EKKFAECVQFCEKAVEVGRETRADY 79 (127)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH----hhhHHHHHHHHHHHHHhCcccchhh
Confidence 4566677777777 44447777777777765 567777778877777 7778888888887766421
Q ss_pred ---HHHHHHHHHHHHc
Q 023425 194 ---AGAAIAYGSLLLR 206 (282)
Q Consensus 194 ---~~a~~~Lg~~y~~ 206 (282)
..+++++|.+|..
T Consensus 80 ~~~a~~~~~lg~~~~~ 95 (127)
T 4gcn_A 80 KLIAKAMSRAGNAFQK 95 (127)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466777777765
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.12 E-value=1.4e-09 Score=80.92 Aligned_cols=113 Identities=11% Similarity=-0.019 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC
Q 023425 82 DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LH 157 (282)
Q Consensus 82 ~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~ 157 (282)
.|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++.. ..++++|+.+|+++.+. .+
T Consensus 12 ~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQK----GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp SSCHHHHHHHHHHHHHHT----TCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHHCTTC
T ss_pred CcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCc
Confidence 467788999999998866 466999999999985 4588999999999988 44559999999999886 67
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
+.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.++.++..
T Consensus 84 ~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 84 IKGYTRKAAALEA----MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 8999999999998 88999999999999775 457788888888864
No 124
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.12 E-value=5.8e-10 Score=84.13 Aligned_cols=49 Identities=16% Similarity=0.051 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN 118 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~ 118 (282)
+++++|+.+|++|++.+|.++.+++++|.+|... .++++|+.+|++|++
T Consensus 22 ~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~----~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 22 KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE----KKFAECVQFCEKAVE 70 (127)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh----hhHHHHHHHHHHHHH
Confidence 3466677777776666666666666666666654 455666666666654
No 125
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.10 E-value=1.1e-09 Score=85.68 Aligned_cols=111 Identities=13% Similarity=-0.001 Sum_probs=79.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC
Q 023425 82 DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LH 157 (282)
Q Consensus 82 ~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~ 157 (282)
++.++.+++.+|.++... .++++|+.+|+++++ +.++.+++++|.+|.. ..++++|+.+|+++++. .+
T Consensus 7 ~~~~a~~~~~~g~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMAR----KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA----SGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp CCHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC
Confidence 344567777788877755 567888888888864 4677888888888877 34448888888888776 57
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLL 204 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y 204 (282)
+.+++++|.+|.. .+++++|+.+|+++++. +++.++++.+...
T Consensus 79 ~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 79 SKAWSRLGLARFD----MADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 7888888888887 78888888888887654 4455555555443
No 126
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.09 E-value=2e-08 Score=101.54 Aligned_cols=188 Identities=13% Similarity=-0.009 Sum_probs=140.9
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+.+++|.+.|.++-..... ....+. ..+++++|.+++++. ..+.+|+.+|..+... .++++|
T Consensus 1062 lglyEEAf~IYkKa~~~~~A--~~VLie------~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~----G~~kEA 1124 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDVNTSA--VQVLIE------HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQK----GMVKEA 1124 (1630)
T ss_pred CCCHHHHHHHHHHcCCHHHH--HHHHHH------HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhC----CCHHHH
Confidence 56789999999886421111 112221 235689998888877 4799999999999977 466999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 110 AALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL-HPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 110 ~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
+..|.+| ++++++..+|.++.. ..++++|+++|..|.+.. .+.....+|.+|.. .++++. ++.|.
T Consensus 1125 IdsYiKA---dD~say~eVa~~~~~----lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK----l~rlee-le~fI-- 1190 (1630)
T 1xi4_A 1125 IDSYIKA---DDPSSYMEVVQAANT----SGNWEELVKYLQMARKKARESYVETELIFALAK----TNRLAE-LEEFI-- 1190 (1630)
T ss_pred HHHHHhc---CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcccccccHHHHHHHHh----hcCHHH-HHHHH--
Confidence 9999887 899999999999998 445599999999988763 44455568888888 566663 44443
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhch--hccCCCHHHHHHHHHHHHHhccHHH
Q 023425 189 SEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLE--SNLMNPVEKAKEQFEVAAQAGCNLG 258 (282)
Q Consensus 189 ~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg--~~~~~~~~~A~~~~~~Aa~~g~~~a 258 (282)
+..+...+.++|..++. .++++.|..+|.++. .|..++ ....+++++|++.+++| +++.+
T Consensus 1191 -~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA~--ny~rLA~tLvkLge~q~AIEaarKA---~n~~a 1252 (1630)
T 1xi4_A 1191 -NGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNVS--NFGRLASTLVHLGEYQAAVDGARKA---NSTRT 1252 (1630)
T ss_pred -hCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhh--HHHHHHHHHHHhCCHHHHHHHHHHh---CCHHH
Confidence 45566778899999998 899999999999984 555555 34567899999999998 44444
No 127
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.09 E-value=8.9e-09 Score=95.89 Aligned_cols=206 Identities=12% Similarity=-0.027 Sum_probs=152.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhcCCCc-------hhhHH-------HHHHHHHHHHH-cCCCCHHHHHHHHHHHhc
Q 023425 34 KKAMELIAKGWSALKEVDRVIDYCELNDRRL-------IPLLK-------TAKENFELALE-ADNSNTHARYWLSKLHLK 98 (282)
Q Consensus 34 ~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-------~A~~~~~~a~~-~~~g~~~a~~~Lg~~~~~ 98 (282)
++++..|.+++...+.. ....+..+..... .++++ +|...|++|++ ..|.++..++.+|.++..
T Consensus 255 ~~a~~~y~~al~~~p~~-~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHH-PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46777888887754432 2222222222111 34454 89999999997 789999999999999986
Q ss_pred CCCCCcCHHHHHHHHHHHHhC--CCH-HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHH-HhcCC
Q 023425 99 YHVPGACKAMGAALLVDAANM--GDP-DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL--HPGALYLLGTV-YLTGD 172 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~~--g~~-~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~-y~~g~ 172 (282)
. .+.++|...|+++++. .++ .++..+|.++... .+.++|...|++|.+.. ....+...+.+ +..
T Consensus 334 ~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~-- 403 (530)
T 2ooe_A 334 R----MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA----EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC-- 403 (530)
T ss_dssp T----TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH--
T ss_pred c----CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh----cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH--
Confidence 6 4779999999999975 344 5899999988773 34599999999999873 34445554544 333
Q ss_pred CCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH----------chhch--hccCC
Q 023425 173 CVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA----------RANLE--SNLMN 238 (282)
Q Consensus 173 g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a----------~~~lg--~~~~~ 238 (282)
.+++++|+.+|+++++. +++..+..++.++.. .++.++|..+|++++... |.... ....|
T Consensus 404 --~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~----~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 404 --SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp --TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred --cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 68899999999999875 578999999999987 789999999999998731 11111 12457
Q ss_pred CHHHHHHHHHHHHHhccH
Q 023425 239 PVEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 239 ~~~~A~~~~~~Aa~~g~~ 256 (282)
+.+.+...+.++.+.-+.
T Consensus 478 ~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHCch
Confidence 888888888888876654
No 128
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.08 E-value=1e-10 Score=107.55 Aligned_cols=138 Identities=14% Similarity=0.060 Sum_probs=117.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCC---------------HHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGD---------------PDAQYE 127 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~---------------~~A~~~ 127 (282)
..++++|+..|+++++.+|.++.+++.+|..+... .++++|+.+|++|++ +.+ ..++++
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~----g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKG----GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence 35677888899999888888999999999999976 678999999999985 455 689999
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSL 203 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~ 203 (282)
+|.+|.. ..++++|+.+|.+|++. .++.+++++|.+|.. .+++++|+.+|++|++. .++.++.+|+.+
T Consensus 323 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 323 LAMCYLK----LREYTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999 55559999999999987 789999999999999 99999999999999886 467889999999
Q ss_pred HHcCCCCcccHHHHH
Q 023425 204 LLRGVQVPECLTKLN 218 (282)
Q Consensus 204 y~~g~g~~~~~~~A~ 218 (282)
+.. .++++++.
T Consensus 395 ~~~----~~~~~~a~ 405 (457)
T 1kt0_A 395 QKK----AKEHNERD 405 (457)
T ss_dssp HHH----HHHHHHHH
T ss_pred HHH----HHHHHHHH
Confidence 987 56665543
No 129
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.08 E-value=1.4e-09 Score=81.14 Aligned_cols=95 Identities=9% Similarity=-0.115 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|+++.+++++|.++... .++++|+.+|+++++ +.++.+++++|.++.. ..+++
T Consensus 18 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~ 89 (126)
T 3upv_A 18 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL----MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA----VKEYA 89 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HhCHH
Confidence 4599999999999999999999999999999976 578999999999985 6789999999999999 44559
Q ss_pred HHHHHHHHHHHcC--------CHHHHHHHHHHH
Q 023425 144 QAFYYIEKAVDQL--------HPGALYLLGTVY 168 (282)
Q Consensus 144 ~A~~~~~kAa~~g--------~~~A~~~Lg~~y 168 (282)
+|+.+|+++.+.. ++.+...|+.+.
T Consensus 90 ~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 90 SALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 9999999998754 455666666554
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.07 E-value=1.3e-09 Score=84.46 Aligned_cols=84 Identities=11% Similarity=-0.043 Sum_probs=75.6
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCC
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQS 141 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d 141 (282)
..+++++|+..|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ ++++.+++++|.+|... .+
T Consensus 33 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~----g~ 104 (148)
T 2vgx_A 33 QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM----GQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX----GE 104 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT----TC
T ss_pred HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc----CC
Confidence 345699999999999999999999999999999976 578999999999984 68999999999999994 44
Q ss_pred HHHHHHHHHHHHHc
Q 023425 142 DQQAFYYIEKAVDQ 155 (282)
Q Consensus 142 ~~~A~~~~~kAa~~ 155 (282)
+++|+.+|+++++.
T Consensus 105 ~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 105 LAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999999886
No 131
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.05 E-value=1.5e-09 Score=84.95 Aligned_cols=95 Identities=14% Similarity=-0.112 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|.++.+++++|.+|... .++++|+.+|+++++ +.++.+++++|.+|.. ..+++
T Consensus 25 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~ 96 (164)
T 3sz7_A 25 KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS----GQHEKAAEDAELATVVDPKYSKAWSRLGLARFD----MADYK 96 (164)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHH
T ss_pred CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHH
Confidence 4599999999999999999999999999999976 578999999999985 6789999999999999 45559
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVY 168 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y 168 (282)
+|+.+|+++++. +++.+++..+...
T Consensus 97 ~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 97 GAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 999999999986 6677666666553
No 132
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.05 E-value=1.4e-09 Score=83.32 Aligned_cols=83 Identities=10% Similarity=-0.100 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ ++++.+++++|.+|... .++
T Consensus 31 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~ 102 (142)
T 2xcb_A 31 AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL----GLYEQALQSYSYGALMDINEPRFPFHAAECHLQL----GDL 102 (142)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT----TCH
T ss_pred HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc----CCH
Confidence 35699999999999999999999999999999976 578999999999984 67999999999999994 455
Q ss_pred HHHHHHHHHHHHc
Q 023425 143 QQAFYYIEKAVDQ 155 (282)
Q Consensus 143 ~~A~~~~~kAa~~ 155 (282)
++|+.+|+++.+.
T Consensus 103 ~~A~~~~~~al~~ 115 (142)
T 2xcb_A 103 DGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999886
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.04 E-value=1.3e-08 Score=74.41 Aligned_cols=113 Identities=24% Similarity=0.277 Sum_probs=90.2
Q ss_pred CCCC-HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C
Q 023425 82 DNSN-THARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L 156 (282)
Q Consensus 82 ~~g~-~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g 156 (282)
+|.. +.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++... .++++|+.+|+++.+. .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQ----GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ----GDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp ---CHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTT
T ss_pred CccccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhCCc
Confidence 4444 77888899888865 577999999999875 46788899999988884 4459999999998876 5
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 157 HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
++.+++.+|.+|.. .+++++|+.+|+++++. .++.+...+|.++..
T Consensus 76 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 76 NAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 78888999999988 88999999999998775 568888888887753
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.04 E-value=4.9e-09 Score=77.32 Aligned_cols=113 Identities=11% Similarity=-0.024 Sum_probs=80.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC
Q 023425 82 DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LH 157 (282)
Q Consensus 82 ~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~ 157 (282)
+|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++.. ..++++|+.+|.++... .+
T Consensus 8 ~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKV----ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK----LGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred chhhhHHHHHHHHHHHHc----cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hhchHHHHHHHHHHHhcCccC
Confidence 344566777777777754 466777777777764 4567777777877777 34447788888877765 56
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
+.+++.+|.+|.. .+++++|+.+|+++++. .++.+.+.+|.++..
T Consensus 80 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 80 SKAYGRMGLALSS----LNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 7777888888777 77788888888887664 457777777777764
No 135
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.03 E-value=5.1e-10 Score=90.51 Aligned_cols=97 Identities=12% Similarity=-0.063 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCH----------------HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHH
Q 023425 66 PLLKTAKENFELALEADNSNT----------------HARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYE 127 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~----------------~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~ 127 (282)
+++++|+.+|+++++..|.++ .+++++|.+|... .++++|+.+|+++++ +.++.+++.
T Consensus 52 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~ 127 (198)
T 2fbn_A 52 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN----KDYPKAIDHASKVLKIDKNNVKALYK 127 (198)
T ss_dssp TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 446777777777776666665 5555555555543 344555555555543 345555555
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
+|.+|.. ..++++|+.+|+++++. .++.++..++.++..
T Consensus 128 lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 128 LGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 5555555 33335555555555544 455555555555544
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.02 E-value=4.2e-09 Score=77.70 Aligned_cols=98 Identities=16% Similarity=0.018 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++.. ..++
T Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 96 (131)
T 2vyi_A 25 VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL----GNYAGAVQDCERAICIDPAYSKAYGRMGLALSS----LNKH 96 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCH
T ss_pred ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----hchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH----hCCH
Confidence 35699999999999999999999999999999866 578999999999985 5789999999999998 4455
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
++|+.+|+++.+. +++.++..+|.++..
T Consensus 97 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 97 VEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 9999999999987 689999999999876
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.02 E-value=8e-10 Score=89.33 Aligned_cols=133 Identities=12% Similarity=0.024 Sum_probs=107.1
Q ss_pred CCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCH----------------H
Q 023425 62 RRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDP----------------D 123 (282)
Q Consensus 62 ~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~----------------~ 123 (282)
....++++++.+.+....+..+..+..+..+|..+... .++++|+.+|.++++. .++ .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKK----NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 33445677777777766655566788899999999865 6889999999999964 444 8
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHH
Q 023425 124 AQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIA 199 (282)
Q Consensus 124 A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~ 199 (282)
+++++|.+|.. ..++++|+.+|.++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+...
T Consensus 90 ~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~ 161 (198)
T 2fbn_A 90 CNLNLATCYNK----NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNS 161 (198)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 99999999998 45569999999999987 689999999999999 99999999999999775 57899999
Q ss_pred HHHHHHc
Q 023425 200 YGSLLLR 206 (282)
Q Consensus 200 Lg~~y~~ 206 (282)
++.++..
T Consensus 162 l~~~~~~ 168 (198)
T 2fbn_A 162 YELCVNK 168 (198)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.02 E-value=3.3e-09 Score=85.07 Aligned_cols=146 Identities=12% Similarity=0.024 Sum_probs=110.0
Q ss_pred ccchHHHHH---HHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHhcCC
Q 023425 30 HSRNKKAME---LIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALE------ADNSNTHARYWLSKLHLKYH 100 (282)
Q Consensus 30 ~~~~~~A~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------~~~g~~~a~~~Lg~~~~~~~ 100 (282)
.+++++|.+ .+.. ............+......+++++|+.+|+++++ ..+..+.+++++|.++...
T Consensus 5 ~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~- 79 (203)
T 3gw4_A 5 AHDYALAERQAQALLA----HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA- 79 (203)
T ss_dssp --CHHHHHHHHHHHHT----STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-
T ss_pred cccHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-
Confidence 567788887 4422 2222333444444444556779999999999998 5556678999999999966
Q ss_pred CCCcCHHHHHHHHHHHHhC----C-C----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCH----HHHHH
Q 023425 101 VPGACKAMGAALLVDAANM----G-D----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LHP----GALYL 163 (282)
Q Consensus 101 ~~~~~~~~A~~~~~~Aa~~----g-~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~~----~A~~~ 163 (282)
.++++|+.+|+++.+. + + ..++.++|.++.. ..++++|+.+++++.+. +++ .++..
T Consensus 80 ---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 152 (203)
T 3gw4_A 80 ---GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH----FGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152 (203)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5789999999999753 3 3 4578999999998 45559999999999863 443 45689
Q ss_pred HHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 164 LGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 164 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+|.+|.. .+++++|+.++++|++.
T Consensus 153 la~~~~~----~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 153 LGDLAQQ----EKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 9999999 89999999999999763
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.01 E-value=3.2e-09 Score=78.95 Aligned_cols=98 Identities=9% Similarity=-0.062 Sum_probs=86.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++++|.++.. ..++
T Consensus 29 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~ 100 (133)
T 2lni_A 29 KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL----LEFQLALKDCEECIQLEPTFIKGYTRKAAALEA----MKDY 100 (133)
T ss_dssp TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCH
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----HhhH
Confidence 34599999999999999999999999999999865 678999999999985 5789999999999998 4455
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
++|+.+|+++.+. .++.++..++.++..
T Consensus 101 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 101 TKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999987 578899999998865
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.00 E-value=9.8e-09 Score=77.16 Aligned_cols=99 Identities=14% Similarity=-0.024 Sum_probs=75.2
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C
Q 023425 81 ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L 156 (282)
Q Consensus 81 ~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g 156 (282)
.++.++.+++.+|..+... .++++|+.+|+++++ +.++.+++++|.++.. ..++++|+.+|++++.. +
T Consensus 4 ~~~~~~~~~~~~g~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~ 75 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVG----RKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQ 75 (137)
T ss_dssp --CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTT
T ss_pred CccccHHHHHHHHHHHHHh----CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCch
Confidence 3566788888888888765 567888888888874 5677888888888887 44458888888888775 5
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 157 HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
++.+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 76 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 76 SVKAHFFLGQCQLE----MESYDEAIANLQRAYSL 106 (137)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence 77888888888887 78888888888888764
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.99 E-value=2.4e-08 Score=72.20 Aligned_cols=107 Identities=7% Similarity=-0.119 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGAL 161 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~ 161 (282)
+.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++.. ..++++|+.+++++.+. .++.++
T Consensus 4 ~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSV----GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK----KGDYQKAYEDGCKTVDLKPDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhCcccHHHH
Confidence 45666677766644 456777777777653 4566777777777766 34447777777777665 466777
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 162 YLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLL 204 (282)
Q Consensus 162 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y 204 (282)
+.+|.+|.. .+++++|+.+|+++++. +++.+...++.+.
T Consensus 76 ~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 76 SRKAAALEF----LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH----HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 777777776 67777777777777664 3566666666554
No 142
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=3.2e-08 Score=74.89 Aligned_cols=114 Identities=11% Similarity=-0.046 Sum_probs=94.7
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 81 ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG--D---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 81 ~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
.++.++..++.+|..+... .++++|+.+|+++++.. + +.+++++|.+|.. ..++++|+.+|+++++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKC----GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK----LEDYDKAETEASKAIEK 94 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhh
Confidence 4577889999999998865 57899999999998653 3 7889999999988 45559999999999876
Q ss_pred --CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 156 --LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 156 --g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
.++.+++.+|.+|.. .+++++|+.+|+++++. .++.+...++.+...
T Consensus 95 ~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 95 DGGDVKALYRRSQALEK----LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp TSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred CccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 578999999999998 89999999999999775 467888888877654
No 143
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.98 E-value=4.7e-09 Score=75.43 Aligned_cols=99 Identities=11% Similarity=-0.033 Sum_probs=79.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C-
Q 023425 82 DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L- 156 (282)
Q Consensus 82 ~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g- 156 (282)
+|+++.+++.+|.++... +++++|+.+|+++++ +.++.+++++|.++.. ..++++|+.+|+++.+. .
T Consensus 2 ~p~~~~~~~~~~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~ 73 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDA----GNYTESIDLFEKAIQLDPEESKYWLMKGKALYN----LERYEEAVDCYNYVINVIEDE 73 (112)
T ss_dssp CCSSTTGGGGHHHHHHSS----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSCCT
T ss_pred CCCcHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCccc
Confidence 577788888888888855 577888888888875 4678888888888887 34458888888888876 4
Q ss_pred -CHHHHHHHHHHHhcCCCCc-cCHHHHHHHHHHHHHcC
Q 023425 157 -HPGALYLLGTVYLTGDCVK-KDIASALWCFHRASEKG 192 (282)
Q Consensus 157 -~~~A~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~g 192 (282)
++.+++.+|.+|.. . +++++|+.++++++...
T Consensus 74 ~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 74 YNKDVWAAKADALRY----IEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TCHHHHHHHHHHHTT----CSSCSHHHHHHHHHHGGGC
T ss_pred chHHHHHHHHHHHHH----HhCCHHHHHHHHHHHhhcc
Confidence 78888888888888 7 88888888888887653
No 144
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.98 E-value=7.6e-10 Score=101.76 Aligned_cols=139 Identities=13% Similarity=-0.100 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHH
Q 023425 32 RNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN---------------THARYWLSKLH 96 (282)
Q Consensus 32 ~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~---------------~~a~~~Lg~~~ 96 (282)
++++|++.+...+. .........+..+..+...+++++|+.+|++|++.+|.+ ..+++++|.+|
T Consensus 249 ~~~~A~~~~~~~~~-~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTK-EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554444332 112223334444444445567999999999999999998 79999999999
Q ss_pred hcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC
Q 023425 97 LKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGD 172 (282)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~ 172 (282)
... .++++|+.+|.+|++ +.++.+++++|.+|.. ..++++|+.+|++|++. .++.++..|+.++..
T Consensus 328 ~~~----g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~-- 397 (457)
T 1kt0_A 328 LKL----REYTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK-- 397 (457)
T ss_dssp HHT----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH--
T ss_pred HHh----cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Confidence 976 678999999999985 6799999999999999 45569999999999988 688999999999988
Q ss_pred CCccCHHHHHH
Q 023425 173 CVKKDIASALW 183 (282)
Q Consensus 173 g~~~d~~~A~~ 183 (282)
.+++++|..
T Consensus 398 --~~~~~~a~~ 406 (457)
T 1kt0_A 398 --AKEHNERDR 406 (457)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHHH
Confidence 777777654
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.96 E-value=4.7e-09 Score=82.93 Aligned_cols=111 Identities=12% Similarity=-0.008 Sum_probs=92.0
Q ss_pred cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH-HhcCCCCccCH
Q 023425 104 ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTV-YLTGDCVKKDI 178 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~-y~~g~g~~~d~ 178 (282)
.++++|+.+|+++++ +.++.+++.+|.+|.. ..++++|+.+|++++.. .++.+++.+|.+ |.. .+++
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~----~~~~ 95 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLW----QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ----ASQH 95 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH----TTTC
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----cCCc
Confidence 567889999999874 5799999999999998 45569999999999886 689999999999 766 6777
Q ss_pred --HHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 179 --ASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 179 --~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++..
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFM----QANYAQAIELWQKVMD 143 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cccHHHHHHHHHHHHh
Confidence 9999999999875 578999999999998 6777776666666654
No 146
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.96 E-value=2.2e-08 Score=76.39 Aligned_cols=125 Identities=15% Similarity=0.010 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAANM----GDP----DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-- 155 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~~----~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-- 155 (282)
+.+++.+|.++... .++++|+.+|+++.+. +++ .++.++|.++... .++++|+.+|+++.+.
T Consensus 9 ~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 9 GRAFGNLGNTHYLL----GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL----GEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHH
Confidence 45778888888865 5779999999998753 332 4788899999884 4459999999998774
Q ss_pred --CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 023425 156 --LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPECLTKLNAKR 221 (282)
Q Consensus 156 --g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 221 (282)
++ +.+++++|.+|.. .+++++|+.+++++++. ++ +.++..+|.+|.. .+++++|..++
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~ 152 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----LGNHDQAMHFA 152 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH----ccCHHHHHHHH
Confidence 22 5678889999988 89999999999998753 22 5578888888887 77777777777
Q ss_pred HHHHH
Q 023425 222 VSAAK 226 (282)
Q Consensus 222 ~~a~~ 226 (282)
+++.+
T Consensus 153 ~~a~~ 157 (164)
T 3ro3_A 153 EKHLE 157 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 147
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.93 E-value=1.3e-07 Score=82.30 Aligned_cols=223 Identities=11% Similarity=-0.002 Sum_probs=152.7
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCch--hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----hcCCCCCc
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLI--PLLKTAKENFELALEADNSNTHARYWLSKLH----LKYHVPGA 104 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~----~~~~~~~~ 104 (282)
...++|++.+.+.+...+.......+.. ...... .++++++.++.+++..+|.+..+++.-+.++ ...+. ..
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~-~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~-~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRF-NILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN-DF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT-CC
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHH-HHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc-cC
Confidence 3457888888888875554433333222 222222 3789999999999999999999999998888 43311 24
Q ss_pred CHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccC---
Q 023425 105 CKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKD--- 177 (282)
Q Consensus 105 ~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d--- 177 (282)
+.++++.++.++++ +.+..+++.-+.++..-+.. +..+++.++.++++. .+..|++..+.++.. .+.
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~--~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~----l~~~~~ 198 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH--NDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS----KKHLAT 198 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS----SGGGCC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----ccccch
Confidence 66888899999874 56888998888887764433 113889999999887 688899998888876 343
Q ss_pred ---HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH---------HHchhchh--ccCCCHH
Q 023425 178 ---IASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK---------KARANLES--NLMNPVE 241 (282)
Q Consensus 178 ---~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------~a~~~lg~--~~~~~~~ 241 (282)
++++++++++++.. ++..|++.++.++..... ..+....++++... .+...++. ...++.+
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR---SITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---CGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC---ChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 88899999998765 678899888888876432 22223334443322 22333332 2567888
Q ss_pred HHHHHHHHHHH-hccHHHHHHHHH
Q 023425 242 KAKEQFEVAAQ-AGCNLGLRWLQR 264 (282)
Q Consensus 242 ~A~~~~~~Aa~-~g~~~a~~~l~~ 264 (282)
+|++.|+++++ .......+|.-+
T Consensus 276 ~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHhccChHHHHHHHHH
Confidence 99999999887 566666666543
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.93 E-value=1.7e-08 Score=73.09 Aligned_cols=96 Identities=11% Similarity=-0.075 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++... .++
T Consensus 17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~ 88 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK----GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL----NRF 88 (118)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH----hhH
Confidence 35699999999999999999999999999999865 578999999999985 56899999999999984 455
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVY 168 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y 168 (282)
++|+.+|+++.+. +++.++..++.+.
T Consensus 89 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 89 EEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999987 6788888888775
No 149
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.92 E-value=3.6e-09 Score=79.05 Aligned_cols=82 Identities=13% Similarity=0.018 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+..|+++++.+|+++.+++.||.++... .++++|+..|++|++ +++++++++||.+|.. ..+++
T Consensus 31 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~----g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~----~g~~~ 102 (121)
T 1hxi_A 31 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN----EKDGLAIIALNHARMLDPKDIAVHAALAVSHTN----EHNAN 102 (121)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Confidence 3478888888888888888888888888888765 466788888888764 5677788888877776 33447
Q ss_pred HHHHHHHHHHHc
Q 023425 144 QAFYYIEKAVDQ 155 (282)
Q Consensus 144 ~A~~~~~kAa~~ 155 (282)
+|+.+|+++++.
T Consensus 103 ~A~~~~~~al~~ 114 (121)
T 1hxi_A 103 AALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh
Confidence 777777777664
No 150
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.92 E-value=3.4e-09 Score=82.92 Aligned_cols=90 Identities=11% Similarity=0.059 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCC------cCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCC
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPG------ACKAMGAALLVDAA--NMGDPDAQYELGCRLRVEND 137 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~------~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~ 137 (282)
..+++|++.|+++++.+|+++++++++|.++....... ..+++|+..|++|+ ++.+++|+++||.+|...+.
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 45899999999999999999999999999988542221 12568888899887 45688899999988875321
Q ss_pred -Cc------CCHHHHHHHHHHHHHc
Q 023425 138 -YV------QSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 138 -~~------~d~~~A~~~~~kAa~~ 155 (282)
+| .++++|+.+|++|++.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh
Confidence 11 2457777777777776
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.92 E-value=6.5e-10 Score=95.38 Aligned_cols=180 Identities=8% Similarity=-0.117 Sum_probs=136.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHH-HHHHHh-----hcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHH------------
Q 023425 30 HSRNKKAMELIAKGWSALKEVDR-VIDYCE-----LNDRRLIPLLKTAKENFELALEADNSNTHARYW------------ 91 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~------------ 91 (282)
..+...|.+.|.++....+.... ..++.. +..........+++..+++++++.|++-.+.+.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 46689999999998775553322 222210 011111234678888999999887777777776
Q ss_pred ---------HHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCH--
Q 023425 92 ---------LSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHP-- 158 (282)
Q Consensus 92 ---------Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~-- 158 (282)
++.++... .++++|.+.|.... .++++ +.+.+|.++.. .+++++|+.+|+++....++
T Consensus 99 ~~r~dl~LayA~~L~~~----g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~----~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQ----GNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA----AERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp SSHHHHHHHHHHHHHHH----TCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH----TTCHHHHHHHHTTGGGCSCHHH
T ss_pred CCHhHHHHHHHHHHHHC----CCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH----cCCHHHHHHHHHHhhccCCccc
Confidence 55666644 57799999998886 44566 99999999999 66679999999988776433
Q ss_pred --HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 159 --GALYLLGTVYLTGDCVKKDIASALWCFHRASEKG-----HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 159 --~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+.+.||.++.. .+++++|+.||+++.... .+++.+++|.++.. .++.++|...|+++..
T Consensus 170 ~~~a~~~LG~al~~----LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~----lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 170 AGAAGVAHGVAAAN----LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS----QGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 589999999999 999999999999998654 35689999999999 8999999999998875
No 152
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.92 E-value=2.7e-08 Score=73.37 Aligned_cols=109 Identities=9% Similarity=-0.029 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC---
Q 023425 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LH--- 157 (282)
Q Consensus 85 ~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~--- 157 (282)
.+.+++.+|.++... .++++|+.+|+++++ +.++.+++++|.+|.. ..++++|+.+|+++... .+
T Consensus 3 ~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 3 QALKEKELGNDAYKK----KDFDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp HHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHh----cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhccccchh
Confidence 356677777777754 466788888887764 3567777788877776 44457888888887765 23
Q ss_pred ----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 023425 158 ----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-GHAGAAIAYGSLLL 205 (282)
Q Consensus 158 ----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-g~~~a~~~Lg~~y~ 205 (282)
+.+++.+|.+|.. .+++++|+.+|+++++. .++.....++.+..
T Consensus 75 ~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFK----EEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7778888888887 78888888888888775 35666666666654
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.91 E-value=3e-08 Score=72.34 Aligned_cols=98 Identities=23% Similarity=0.184 Sum_probs=86.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++..|+++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++.. ..++
T Consensus 22 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~ 93 (125)
T 1na0_A 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ----GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDY 93 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCH
T ss_pred cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCH
Confidence 45699999999999999999999999999999876 578999999999985 5689999999999998 4455
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
++|+.+|+++.+. .++.+...+|.++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 94 DEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 9999999999886 689999999988754
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.90 E-value=3.2e-08 Score=74.24 Aligned_cols=96 Identities=22% Similarity=0.082 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCH
Q 023425 119 MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHA 194 (282)
Q Consensus 119 ~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~ 194 (282)
+.++.+++.+|.++.. ..++++|+.+|++++.. .++.+++++|.+|.. .+++++|+.+|++++.. +++
T Consensus 6 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 6 SPSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSV 77 (137)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred cccHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCchhH
Confidence 4578999999999998 55559999999999986 689999999999999 89999999999999875 578
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 195 GAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 195 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+++++|.+|.. .+++++|+.+|+++..
T Consensus 78 ~~~~~l~~~~~~----~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 78 KAHFFLGQCQLE----MESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Confidence 999999999998 6777766666665544
No 155
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.90 E-value=2.3e-07 Score=93.91 Aligned_cols=188 Identities=11% Similarity=-0.025 Sum_probs=135.0
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|+++..+.. ...+.+..+......+++++|++.|.+| +++.+++.+|..+... .++++|
T Consensus 1089 i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~l----GkyEEA 1153 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTS----GNWEEL 1153 (1630)
T ss_pred HhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHc----CCHHHH
Confidence 456777777666431 2344556666666778899999999998 6899999999999976 578999
Q ss_pred HHHHHHHHhCC-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 110 AALLVDAANMG-DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 110 ~~~~~~Aa~~g-~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
+++|..|.+.. ++..-..+|..|...+.. + +++.|. ...+...+..+|..++. .+++++|..+|.+|
T Consensus 1154 IeyL~mArk~~~e~~Idt~LafaYAKl~rl----e-ele~fI---~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1154 VKYLQMARKKARESYVETELIFALAKTNRL----A-ELEEFI---NGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHHHHHHhhcccccccHHHHHHHHhhcCH----H-HHHHHH---hCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh
Confidence 99999998643 334455688888774332 4 344443 44466777788888888 88899999999886
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-HHch------------hc------------------h--hc
Q 023425 189 SEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK-KARA------------NL------------------E--SN 235 (282)
Q Consensus 189 ~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~a~~------------~l------------------g--~~ 235 (282)
.-+..++.+|.+ .++++.|+..+++|.. .+|. .+ + +.
T Consensus 1222 ------~ny~rLA~tLvk----Lge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1222 ------SNFGRLASTLVH----LGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQ 1291 (1630)
T ss_pred ------hHHHHHHHHHHH----hCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHH
Confidence 477888888887 5778888888887754 2221 11 1 22
Q ss_pred cCCCHHHHHHHHHHHHHhc
Q 023425 236 LMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 236 ~~~~~~~A~~~~~~Aa~~g 254 (282)
..+.+++|+.+++++....
T Consensus 1292 ~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HcCCHHHHHHHHHHHhccC
Confidence 5677888888888886544
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.90 E-value=5.6e-08 Score=87.31 Aligned_cols=171 Identities=13% Similarity=0.063 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHHcCCCCH-----------------HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----CCH---
Q 023425 67 LLKTAKENFELALEADNSNT-----------------HARYWLSKLHLKYHVPGACKAMGAALLVDAANM----GDP--- 122 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~-----------------~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~~--- 122 (282)
++++|++.|+++++..+... .+...||.+|... +++++|+.+|.++.+. +..
T Consensus 19 ~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 19 QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTM----GAKDKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHccchHHH
Confidence 35666666666665444332 3577888888855 5678888888887641 221
Q ss_pred -HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--
Q 023425 123 -DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-- 191 (282)
Q Consensus 123 -~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-- 191 (282)
.....+|.++.. +.++++|+.+++++... .......+||.+|.. .+++.+|+.+++++...
T Consensus 95 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 95 KVLKTLIEKFEQV----PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ----KKQYKDSLALINDLLREFK 166 (434)
T ss_dssp HHHHHHHHHHCSC----CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHH
Confidence 234456666655 44568888888887653 236677888888888 88888888888887542
Q ss_pred ------CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH-------------Hchhchh--ccCCCHHHHHHHHHHH
Q 023425 192 ------GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK-------------ARANLES--NLMNPVEKAKEQFEVA 250 (282)
Q Consensus 192 ------g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------a~~~lg~--~~~~~~~~A~~~~~~A 250 (282)
....++..+|.+|.. .+|+++|..+|+++... .+..+|. ...+++.+|..+|..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 136678888888887 78888888888887652 1223442 3677888888888888
Q ss_pred HHh
Q 023425 251 AQA 253 (282)
Q Consensus 251 a~~ 253 (282)
.+.
T Consensus 243 ~~~ 245 (434)
T 4b4t_Q 243 FES 245 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 157
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.90 E-value=6.6e-09 Score=89.16 Aligned_cols=83 Identities=14% Similarity=-0.056 Sum_probs=72.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++.+|.++.+++++|.+|... .++++|+..|+++++ ++++.+++++|.+|... .++
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~ 88 (281)
T 2c2l_A 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM----QQPEQALADCRRALELDGQSVKAHFFLGQCQLEM----ESY 88 (281)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT----TCH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCH
Confidence 35599999999999999999999999999999876 578999999999985 57899999999999984 455
Q ss_pred HHHHHHHHHHHHc
Q 023425 143 QQAFYYIEKAVDQ 155 (282)
Q Consensus 143 ~~A~~~~~kAa~~ 155 (282)
++|+.+|+++.+.
T Consensus 89 ~~A~~~~~~al~l 101 (281)
T 2c2l_A 89 DEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.89 E-value=1.3e-08 Score=75.92 Aligned_cols=93 Identities=15% Similarity=-0.028 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 023425 88 ARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYL 163 (282)
Q Consensus 88 a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~ 163 (282)
.++.+|..+... .++++|+..|++++ +++++.+++.||.++...+ ++++|+.+|+++++. +++.+++.
T Consensus 19 ~~~~~g~~~~~~----g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g----~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKL----ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE----KDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHT----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHc----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 467788887755 57789999999987 4678899999999888844 448999999998887 68889999
Q ss_pred HHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 164 LGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 164 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
||.+|.. .+++++|+.+|+++++..
T Consensus 91 la~~~~~----~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 91 LAVSHTN----EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 9999888 888999999999887653
No 159
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.89 E-value=4.8e-09 Score=96.99 Aligned_cols=117 Identities=15% Similarity=0.006 Sum_probs=98.6
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcC
Q 023425 58 ELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVE 135 (282)
Q Consensus 58 ~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g 135 (282)
.+......+++++|+.+|++|++.+|.++.+++++|.+|... .++++|+.+|++|++ +.++.+++++|.+|..
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~- 86 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT----ECYGYALGDATRAIELDKKYIKGYYRRAASNMA- 86 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence 344455568899999999999999999999999999999976 578999999999986 5789999999999998
Q ss_pred CCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH--HhcCCCCccCHHHHHHHHH
Q 023425 136 NDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTV--YLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 136 ~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~--y~~g~g~~~d~~~A~~~~~ 186 (282)
..++++|+.+|+++.+. +++.++..++.+ +.. .+++++|+..++
T Consensus 87 ---~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 ---LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDE 134 (477)
T ss_dssp ---HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH----HHHHCCC-----
T ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHhcccc
Confidence 45559999999999987 678899999988 777 789999999999
No 160
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.88 E-value=5.6e-09 Score=89.58 Aligned_cols=98 Identities=14% Similarity=-0.022 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 023425 83 NSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHP 158 (282)
Q Consensus 83 ~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~ 158 (282)
|.++.+++.+|..+... +++++|+..|+++++ +.++.+++++|.+|.. ..++++|+.+|+++++. +++
T Consensus 1 p~~a~~~~~~g~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVG----RKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSCTTCH
T ss_pred ChhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCH
Confidence 56789999999999976 678999999999985 6799999999999998 44559999999999987 789
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
.+++++|.+|.. .+++++|+.+|+++++..
T Consensus 73 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 73 KAHFFLGQCQLE----MESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 999999999999 899999999999998753
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.86 E-value=1.6e-06 Score=76.06 Aligned_cols=228 Identities=8% Similarity=-0.087 Sum_probs=167.2
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCC---------chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELNDRR---------LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV 101 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~ 101 (282)
...++|++++.+.+...+.......+....-.. ....+++++.++.+++..+|.++.+|+.-+.++...+.
T Consensus 44 e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 44 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp CCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc
Confidence 345689999999888666444333222111000 11237899999999999999999999999999886532
Q ss_pred CCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC-----
Q 023425 102 PGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGD----- 172 (282)
Q Consensus 102 ~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~----- 172 (282)
.++++++.++.++++ +.+..|++.-+.++...+. ..++++.++.++++. .+..|++..+.++..-.
T Consensus 124 --~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~---~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 124 --PNWARELELCARFLEADERNFHCWDYRRFVAAQAAV---APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred --ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence 368999999999985 5789999999988876443 148999999999987 79999999998876521
Q ss_pred -----CCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCc-------ccHHHHHHHHHHHHH----HHchhchh
Q 023425 173 -----CVKKDIASALWCFHRASE--KGHAGAAIAYGSLLLRGVQVP-------ECLTKLNAKRVSAAK----KARANLES 234 (282)
Q Consensus 173 -----g~~~d~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~-------~~~~~A~~~~~~a~~----~a~~~lg~ 234 (282)
...+.++++++++.+++. .++..+++.+..++..+.|.. .-+++++.+++...+ ..|..++.
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 112568999999999976 478999988888888765532 346778888888876 23333331
Q ss_pred -------ccCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 023425 235 -------NLMNPVEKAKEQFEVAAQAGCNLGLRWLQ 263 (282)
Q Consensus 235 -------~~~~~~~~A~~~~~~Aa~~g~~~a~~~l~ 263 (282)
-..+..++...|+.+.++.++.-.-++..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d 314 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 314 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHH
Confidence 13456788999999999888766655543
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.85 E-value=1e-07 Score=70.16 Aligned_cols=112 Identities=20% Similarity=0.103 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--C----
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--H---- 193 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~---- 193 (282)
+.+++.+|.++.. ..++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++.. +
T Consensus 4 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhccccchhH
Confidence 5778899999988 44559999999999886 578999999999998 899999999999997753 3
Q ss_pred ---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHH
Q 023425 194 ---AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAG-CNLGLRWLQRIEEEE 269 (282)
Q Consensus 194 ---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g-~~~a~~~l~~l~~~~ 269 (282)
+.+++++|.+|.. .+++ ++|+.+|+++.+.. ++.....+..+....
T Consensus 76 ~~~~~~~~~la~~~~~----~~~~--------------------------~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 76 RQIAKAYARIGNSYFK----EEKY--------------------------KDAIHFYNKSLAEHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHHHH----TTCH--------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----hccH--------------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7788889988887 4555 56777777777754 566666777766655
Q ss_pred hh
Q 023425 270 KR 271 (282)
Q Consensus 270 ~~ 271 (282)
+.
T Consensus 126 ~~ 127 (131)
T 1elr_A 126 KE 127 (131)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 163
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.85 E-value=3.6e-07 Score=79.47 Aligned_cols=194 Identities=9% Similarity=-0.080 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHH----hcCCCCcCC
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRL----RVENDYVQS 141 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y----~~g~~~~~d 141 (282)
.++|+..+.++++.+|.+..+++.-|.++...+. .++++++.++.+++. +.+..+++.-+.++ ...+. ..+
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~--~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~-~~~ 125 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPN--RNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN-DFD 125 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT--SCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT-CCC
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc--ccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc-cCC
Confidence 4789999999999999999999999999986632 478999999999984 67899999999888 44311 245
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHH--HHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC--Cccc
Q 023425 142 DQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIA--SALWCFHRASEK--GHAGAAIAYGSLLLRGVQ--VPEC 213 (282)
Q Consensus 142 ~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~--~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g--~~~~ 213 (282)
+++++.++.++++. .+..|++..+.++.. .++++ +++.++.++++. .+..|+.+.+.++..-.. ....
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~----l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDT----FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhh
Confidence 69999999999987 689999999999887 56666 999999999886 578999999999887311 1122
Q ss_pred HHHHHHHHHHHHH------HHchhchhc---cCCCHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHH
Q 023425 214 LTKLNAKRVSAAK------KARANLESN---LMNPVEKAKEQFEVAAQAG-----CNLGLRWLQRIEEE 268 (282)
Q Consensus 214 ~~~A~~~~~~a~~------~a~~~lg~~---~~~~~~~A~~~~~~Aa~~g-----~~~a~~~l~~l~~~ 268 (282)
+++++.++.+++. .+|+.++.. ..........+..+..+.+ ++.|...++.+..+
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 8889999999997 577777633 2233555666777777655 77888888888764
No 164
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.84 E-value=6.1e-09 Score=76.92 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCc
Q 023425 65 IPLLKTAKENFELALEA---DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYV 139 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~---~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~ 139 (282)
.+++++|+.+|+++++. +|.++.+++.||.+|... .++++|+.+|+++++ ++++.+++++|.++.. .
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~ 74 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL----GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN----L 74 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----H
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----c
Confidence 35678888888888877 577788888888888765 566888888888874 5678888888888877 3
Q ss_pred CCHHHHHHHHHHHHHc--CCHHH
Q 023425 140 QSDQQAFYYIEKAVDQ--LHPGA 160 (282)
Q Consensus 140 ~d~~~A~~~~~kAa~~--g~~~A 160 (282)
.++++|+.+|++++.. +++..
T Consensus 75 g~~~~A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 75 GRYEQGVELLLKIIAETSDDETI 97 (117)
T ss_dssp TCHHHHHHHHHHHHHHHCCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHH
Confidence 4448888888888765 44443
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.83 E-value=3.3e-08 Score=75.36 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=92.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----CC----HHHHHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNT------HARYWLSKLHLKYHVPGACKAMGAALLVDAANM----GD----PDAQYELGC 130 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~------~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~----~~A~~~Lg~ 130 (282)
.+++++|+.+|+++++..+..+ .++..+|.++... .++++|+.+|+++.+. ++ ..+++++|.
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 97 (164)
T 3ro3_A 22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL----GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN 97 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3568999999999987533222 4888999999866 5789999999999753 33 568899999
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 131 RLRVENDYVQSDQQAFYYIEKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 131 ~y~~g~~~~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
++.. ..++++|+.+++++.+. ++ +.++..+|.+|.. .+++++|+.+++++.+.
T Consensus 98 ~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 98 TYTL----LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----LGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred HHHH----HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHH
Confidence 9998 45559999999999864 33 5688999999999 99999999999998753
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.83 E-value=7.5e-08 Score=74.96 Aligned_cols=108 Identities=8% Similarity=-0.128 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--------------------CCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAAN--------------------MGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--------------------~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+.++..+|..+... .++++|+.+|.+|++ +.++.+++++|.+|.. ..++++|
T Consensus 11 a~~~~~~G~~~~~~----~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~~~~~~A 82 (162)
T 3rkv_A 11 VEALRQKGNELFVQ----KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN----IGDLHEA 82 (162)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH----HTCHHHH
T ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh----cCcHHHH
Confidence 34555556555543 355666666666653 3456788888888887 4555888
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CH-HHHHHHHHHHH
Q 023425 146 FYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HA-GAAIAYGSLLL 205 (282)
Q Consensus 146 ~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~-~a~~~Lg~~y~ 205 (282)
+.++.++++. .++.+++.+|.+|.. .+++++|+.+|++++... ++ .....|+.+..
T Consensus 83 ~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 83 EETSSEVLKREETNEKALFRRAKARIA----AWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 8888888876 678888888888888 888888888888887753 44 44555655544
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.82 E-value=2e-08 Score=71.99 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--C--
Q 023425 119 MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--G-- 192 (282)
Q Consensus 119 ~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g-- 192 (282)
++++.+++.+|.++.. ..++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .
T Consensus 3 p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~ 74 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYD----AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN----LERYEEAVDCYNYVINVIEDEY 74 (112)
T ss_dssp CSSTTGGGGHHHHHHS----SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSCCTT
T ss_pred CCcHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCcccc
Confidence 5677888999999998 45569999999999987 689999999999999 89999999999999886 4
Q ss_pred CHHHHHHHHHHHHcCCCCc-ccHHHHHHHHHHHHH
Q 023425 193 HAGAAIAYGSLLLRGVQVP-ECLTKLNAKRVSAAK 226 (282)
Q Consensus 193 ~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~ 226 (282)
++.+++++|.+|.. . +++++|+.++++++.
T Consensus 75 ~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 75 NKDVWAAKADALRY----IEGKEVEAEIAEARAKL 105 (112)
T ss_dssp CHHHHHHHHHHHTT----CSSCSHHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHH----HhCCHHHHHHHHHHHhh
Confidence 78999999999988 6 777777777766543
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=6.6e-08 Score=73.13 Aligned_cols=97 Identities=18% Similarity=0.040 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcC
Q 023425 66 PLLKTAKENFELALEADNSN---THARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQ 140 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~---~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~ 140 (282)
+++++|+.+|+++++.+|++ +.+++.+|.+|... .++++|+.+|+++++ +.++.+++.+|.++.. ..
T Consensus 42 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~ 113 (148)
T 2dba_A 42 GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL----EDYDKAETEASKAIEKDGGDVKALYRRSQALEK----LG 113 (148)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH----HT
T ss_pred CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH----ccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH----cC
Confidence 45999999999999999887 89999999999876 678999999999985 5789999999999998 55
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 141 SDQQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 141 d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
++++|+.+|+++.+. .++.+...++.+...
T Consensus 114 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 114 RLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 569999999999887 678888888887654
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.81 E-value=1e-07 Score=70.68 Aligned_cols=93 Identities=18% Similarity=0.131 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCH---HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC--
Q 023425 87 HARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDP---DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LH-- 157 (282)
Q Consensus 87 ~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~---~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~-- 157 (282)
++++.+|..+... +++++|+..|+++++ ++++ .+++.+|.++.. ..++++|+.+|+++++. ++
T Consensus 3 ~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 74 (129)
T 2xev_A 3 RTAYNVAFDALKN----GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA----TRNFQLAEAQFRDLVSRYPTHDK 74 (129)
T ss_dssp CCHHHHHHHHHHT----TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHHHh----CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHCCCCcc
Confidence 3456666666644 456777777777664 3444 567777777766 33447777777777664 34
Q ss_pred -HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 158 -PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 158 -~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+.+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 75 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 75 AAGGLLKLGLSQYG----EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 6667777777776 67777777777777654
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.80 E-value=2.3e-08 Score=78.00 Aligned_cols=96 Identities=11% Similarity=-0.062 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHH
Q 023425 66 PLLKTAKENFELALEA------------------DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQ 125 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~------------------~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~ 125 (282)
+++++|+.+|+++++. +|.++.+++++|.+|... .++++|+.++.++++ +.++.++
T Consensus 25 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~----~~~~~A~~~~~~al~~~p~~~~a~ 100 (162)
T 3rkv_A 25 KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI----GDLHEAEETSSEVLKREETNEKAL 100 (162)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhcCCcchHHH
Confidence 4488999999999887 777789999999999866 578999999999984 6799999
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCH-HHHHHHHHHHh
Q 023425 126 YELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHP-GALYLLGTVYL 169 (282)
Q Consensus 126 ~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~-~A~~~Lg~~y~ 169 (282)
+.+|.+|... .++++|+.+|+++++. +++ .....|+.+..
T Consensus 101 ~~~g~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 101 FRRAKARIAA----WKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999994 4559999999999987 455 44556666543
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.77 E-value=8.8e-08 Score=74.99 Aligned_cols=92 Identities=10% Similarity=-0.109 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C-------C-----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 123 DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L-------H-----PGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 123 ~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g-------~-----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
..+.++|..++. ..++++|+.+|.+|++. . + +.++.++|.++.. .+++++|+.+|.+|
T Consensus 12 ~~~~~~G~~l~~----~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~----Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 12 YLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH----CCCHHHHHHHHHHH
Confidence 344445555544 22335555555555543 2 1 2277777777777 77777777777777
Q ss_pred HHc---------CCHHHH----HHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 189 SEK---------GHAGAA----IAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 189 ~~~---------g~~~a~----~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
++. +++.++ +++|.++.. .+++++|+..|++|++
T Consensus 84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~----lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHhhhccccCCCchHHHHHHHHHhHHHHHHH----CCCHHHHHHHHHHHHh
Confidence 655 456667 777777776 6666666666666655
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.77 E-value=8.5e-08 Score=71.10 Aligned_cols=93 Identities=16% Similarity=0.085 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCC---HHHHHHHHHHHhcCCC
Q 023425 66 PLLKTAKENFELALEADNSNT---HARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGD---PDAQYELGCRLRVEND 137 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~---~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~---~~A~~~Lg~~y~~g~~ 137 (282)
+++++|+..|+++++..|+++ .+++.+|.++... +++++|+.+|+++++ +++ +++++.+|.+|..
T Consensus 16 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~--- 88 (129)
T 2xev_A 16 GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT----RNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG--- 88 (129)
T ss_dssp TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH---
Confidence 559999999999999999999 8999999999976 678999999999985 567 8999999999998
Q ss_pred CcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 023425 138 YVQSDQQAFYYIEKAVDQ--LHPGALYLLGT 166 (282)
Q Consensus 138 ~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~ 166 (282)
..++++|+.+|+++++. +++.+...+..
T Consensus 89 -~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 89 -EGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp -TTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 44559999999999986 45555444443
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.77 E-value=2.3e-09 Score=99.12 Aligned_cols=121 Identities=8% Similarity=-0.027 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGAL 161 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~ 161 (282)
+.+++.+|.++... .++++|+.+|++|++ +.++.+++++|.+|.. ..++++|+.+|++|++. .++.++
T Consensus 6 a~~~~~lg~~~~~~----g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~ 77 (477)
T 1wao_1 6 AEELKTQANDYFKA----KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKGY 77 (477)
T ss_dssp HTTSSSSSSSTTTT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34455566666543 688999999999985 5789999999999999 45559999999999997 689999
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH--HHcCCCCcccHHHHHHHHH
Q 023425 162 YLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSL--LLRGVQVPECLTKLNAKRV 222 (282)
Q Consensus 162 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~--y~~g~g~~~~~~~A~~~~~ 222 (282)
+++|.+|.. .+++++|+.+|++|++. +++.+..+++.+ +.. .+++++|+..++
T Consensus 78 ~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~g~~~~A~~~~~ 134 (477)
T 1wao_1 78 YRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH----HHHHCCC-----
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHhcccc
Confidence 999999999 99999999999999875 567889999988 666 688888888888
No 174
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.77 E-value=1.1e-07 Score=84.91 Aligned_cols=109 Identities=13% Similarity=0.005 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh------------------CCCHHHHHHHHHHHhcCCCCcCCHHHHHH
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAAN------------------MGDPDAQYELGCRLRVENDYVQSDQQAFY 147 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~------------------~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~ 147 (282)
+.++..+|..+... .++++|+..|++|++ +.++.+++++|.+|.. ..++++|+.
T Consensus 223 a~~~~~~g~~~~~~----g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~g~~~~A~~ 294 (370)
T 1ihg_A 223 SEDLKNIGNTFFKS----QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK----MSDWQGAVD 294 (370)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh----ccCHHHHHH
Confidence 55677888888765 577888888888876 2457889999999998 455599999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 148 YIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 148 ~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
+|++|++. .++.+++++|.+|.. .+++++|+.+|++|++. .++.+...|+.++..
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999987 689999999999999 89999999999999775 578888899988876
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.76 E-value=3.7e-08 Score=77.10 Aligned_cols=94 Identities=16% Similarity=-0.024 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+++++|+..|++|++.+|.+|.+ . .-+. .+.++.+++++|.++..-++ +++|
T Consensus 25 g~~eeAi~~Y~kAL~l~p~~~~~---------~----a~~~-----------~~~~a~a~~n~g~al~~Lgr----~~eA 76 (159)
T 2hr2_A 25 GEYDEAAANCRRAMEISHTMPPE---------E----AFDH-----------AGFDAFCHAGLAEALAGLRS----FDEA 76 (159)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTT---------S----CCCH-----------HHHHHHHHHHHHHHHHHTTC----HHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcch---------h----hhhh-----------ccchHHHHHHHHHHHHHCCC----HHHH
Confidence 45999999999999998885432 0 0000 00122355555555555332 3555
Q ss_pred HHHHHHHHHc---------CCHHHH----HHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 146 FYYIEKAVDQ---------LHPGAL----YLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 146 ~~~~~kAa~~---------g~~~A~----~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+.+|.+|++. +++.++ +++|.++.. .+++++|+.+|++|++.
T Consensus 77 l~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~----lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 77 LHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence 5555555544 455666 777777777 77777777777777654
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.74 E-value=2e-08 Score=88.62 Aligned_cols=139 Identities=14% Similarity=0.033 Sum_probs=66.1
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCC
Q 023425 57 CELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVEN 136 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~ 136 (282)
..+..+...+++++|+.+|++|++..|.++. +.. ..+..++...+. ..+++++|.+|...+
T Consensus 184 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~----~~~~~~~~~~l~-------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 184 MDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQL----YGKYQDMALAVK-------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTC----CHHHHHHHHHHH-------THHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhh----cccHHHHHHHHH-------HHHHHHHHHHHHHcC
Confidence 3344444556678888888888777655441 000 011122222111 136777777777744
Q ss_pred CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcc
Q 023425 137 DYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE--KGHAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~ 212 (282)
.. ++|+.+|.++++. .++.+++++|.+|.. .+++++|+.+|+++++ .+++.+...|+.+...- ..
T Consensus 245 ~~----~~A~~~~~~al~~~p~~~~a~~~lg~a~~~----~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~---~~ 313 (338)
T 2if4_A 245 RY----DEAIGHCNIVLTEEEKNPKALFRRGKAKAE----LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE---KA 313 (338)
T ss_dssp CC----HHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHTTC------------------------
T ss_pred CH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---HH
Confidence 44 7777777777765 567777778877777 7777788887777754 35667777777764432 44
Q ss_pred cHHHHHHHHHHHH
Q 023425 213 CLTKLNAKRVSAA 225 (282)
Q Consensus 213 ~~~~A~~~~~~a~ 225 (282)
..+++...|+++.
T Consensus 314 ~~~~a~~~~~~~l 326 (338)
T 2if4_A 314 LYQKQKEMYKGIF 326 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHhh
Confidence 4555555555554
No 177
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.73 E-value=2.1e-07 Score=68.00 Aligned_cols=90 Identities=18% Similarity=0.008 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHH
Q 023425 70 TAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFY 147 (282)
Q Consensus 70 ~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~ 147 (282)
+|+..|+++++.+|.++.+++.+|.+|... .++++|+.+|+++++ +.++.++++||.+|.. ..++++|+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEH----EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG----QGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----cCCHHHHHH
Confidence 577888999888899999999999988865 567889999998874 5678888888888887 444588888
Q ss_pred HHHHHHHc----CCHHHHHHHHHH
Q 023425 148 YIEKAVDQ----LHPGALYLLGTV 167 (282)
Q Consensus 148 ~~~kAa~~----g~~~A~~~Lg~~ 167 (282)
+|+++.+. ++..+...+...
T Consensus 75 ~~~~al~~~~~~~~~~~~~~l~~~ 98 (115)
T 2kat_A 75 AWESGLAAAQSRGDQQVVKELQVF 98 (115)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHHHHHHH
Confidence 88888764 445554444443
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.73 E-value=5.1e-08 Score=87.16 Aligned_cols=106 Identities=13% Similarity=-0.002 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHHHHHH----------------cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHH
Q 023425 65 IPLLKTAKENFELALE----------------ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQY 126 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~----------------~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~ 126 (282)
.+++++|+..|++|++ .+|.++.+++++|.+|... .++++|+.+|++|++ +.++.+++
T Consensus 236 ~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~ 311 (370)
T 1ihg_A 236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM----SDWQGAVDSCLEALEIDPSNTKALY 311 (370)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHhCchhHHHHH
Confidence 3569999999999998 7788899999999999976 678999999999986 57899999
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 023425 127 ELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASAL 182 (282)
Q Consensus 127 ~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~ 182 (282)
++|.+|.. ..++++|+.+|++|.+. +++.+...|+.++.. .++.+++.
T Consensus 312 ~lg~~~~~----~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~----~~~~~~a~ 361 (370)
T 1ihg_A 312 RRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK----IKAQKDKE 361 (370)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHHHHHHH
Confidence 99999999 45569999999999987 689999999999887 66666554
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.67 E-value=1.2e-07 Score=83.50 Aligned_cols=142 Identities=11% Similarity=-0.027 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHH
Q 023425 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLL 164 (282)
Q Consensus 85 ~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~L 164 (282)
.+.+++.+|..+... .++++|+.+|++|++....... +.. ..+.+++...+. ..+++++
T Consensus 178 ~a~~~~~~g~~~~~~----g~~~~A~~~y~~Al~~~p~~~~------~~~----~~~~~~~~~~l~-------~~~~~nl 236 (338)
T 2if4_A 178 AADRRKMDGNSLFKE----EKLEEAMQQYEMAIAYMGDDFM------FQL----YGKYQDMALAVK-------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHHTCSS----SCCHHHHHHHHHHHHHSCHHHH------HTC----CHHHHHHHHHHH-------THHHHHH
T ss_pred HHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHhccchh------hhh----cccHHHHHHHHH-------HHHHHHH
Confidence 455666777776654 3457777777777755433321 111 111133332221 2488999
Q ss_pred HHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchhc-
Q 023425 165 GTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLESN- 235 (282)
Q Consensus 165 g~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~~- 235 (282)
|.+|.. .+++++|+.+|++|++. .++.+++++|.+|.. .+++++|+.+|+++.+ .++.+++.+
T Consensus 237 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~----~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 237 AACLIK----LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE----LGQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHT----TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHTTC----------------
T ss_pred HHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 999999 99999999999999875 579999999999999 8999999999999975 356666644
Q ss_pred --cCCCHHHHHHHHHHHHHhcc
Q 023425 236 --LMNPVEKAKEQFEVAAQAGC 255 (282)
Q Consensus 236 --~~~~~~~A~~~~~~Aa~~g~ 255 (282)
..+..+++..+|.++.....
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCC
Confidence 45567888889988876653
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.66 E-value=4.7e-07 Score=81.24 Aligned_cols=181 Identities=8% Similarity=-0.080 Sum_probs=131.5
Q ss_pred ccchHHHHHHHHHHhhhhhH----------------HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHH------
Q 023425 30 HSRNKKAMELIAKGWSALKE----------------VDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTH------ 87 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~------ 87 (282)
.+++++|++.|.+.++.... .........+..+...+++++|..+|+++++..+..+.
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 45689999999887653221 01112233344444567799999999999875443333
Q ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh----C----CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----
Q 023425 88 ARYWLSKLHLKYHVPGACKAMGAALLVDAAN----M----GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ---- 155 (282)
Q Consensus 88 a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~----~----g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~---- 155 (282)
....+|.++.. +.++++|+.+++++.+ . .....+.+||.+|.. ..++++|+.+++++...
T Consensus 97 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 97 LKTLIEKFEQV----PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ----KKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp HHHHHHHHCSC----CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhc
Confidence 23445666553 3678999999999864 2 236789999999999 55569999999998763
Q ss_pred ----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC-----HHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 023425 156 ----LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH-----AGAAIAYGSLLLRGVQVPECLTKLNAKRV 222 (282)
Q Consensus 156 ----g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~-----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 222 (282)
..+.++..+|.+|.. .+|+++|..+|++|... .+ ......+|.++.. .+++..|..+|.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE----DKDYKTAFSYFF 240 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS----SSCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH----HHhHHHHHHHHH
Confidence 236789999999999 99999999999998653 22 2346677888777 899999999998
Q ss_pred HHHH
Q 023425 223 SAAK 226 (282)
Q Consensus 223 ~a~~ 226 (282)
.+..
T Consensus 241 ~a~~ 244 (434)
T 4b4t_Q 241 ESFE 244 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 181
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.65 E-value=5.7e-08 Score=88.15 Aligned_cols=156 Identities=11% Similarity=-0.037 Sum_probs=44.3
Q ss_pred hhcchhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc
Q 023425 19 LQSNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLK 98 (282)
Q Consensus 19 ~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~ 98 (282)
+++.........+++++|++.|.+.- +...+...+......+.+++|+.+++.+.+. .+++.....|+.+|..
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika~------D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~-~~~~~i~~~Li~~Y~K 106 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAK 106 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CccchhHHHHHHHHHH
Confidence 33344444444677777777775531 1223333344445567788888888877753 3446667777777775
Q ss_pred CCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCH
Q 023425 99 YHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDI 178 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~ 178 (282)
. .+..++..+++. .+..++..+|..+.+.+.. ++|..+|.++ +.+..|+.++.. .+++
T Consensus 107 l----g~l~e~e~f~~~----pn~~a~~~IGd~~~~~g~y----eeA~~~Y~~a------~n~~~LA~~L~~----Lg~y 164 (449)
T 1b89_A 107 T----NRLAELEEFING----PNNAHIQQVGDRCYDEKMY----DAAKLLYNNV------SNFGRLASTLVH----LGEY 164 (449)
T ss_dssp ------CHHHHTTTTTC----C----------------CT----TTHHHHHHHT------TCHHHHHHHHHT----TTCH
T ss_pred h----CCHHHHHHHHcC----CcHHHHHHHHHHHHHcCCH----HHHHHHHHHh------hhHHHHHHHHHH----hccH
Confidence 4 455666666642 4456888888887774444 8888888876 467778888888 7888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023425 179 ASALWCFHRASEKGHAGAAIAYGSLLLR 206 (282)
Q Consensus 179 ~~A~~~~~~A~~~g~~~a~~~Lg~~y~~ 206 (282)
+.|++.|++| +++.++-.+...+..
T Consensus 165 q~AVea~~KA---~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 165 QAAVDGARKA---NSTRTWKEVCFACVD 189 (449)
T ss_dssp HHHHHHHHHH---TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCchhHHHHHHHHHH
Confidence 8888888888 466555444444443
No 182
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.62 E-value=9.7e-07 Score=83.25 Aligned_cols=173 Identities=9% Similarity=-0.069 Sum_probs=127.1
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhh----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPL----------LKTAKENFELALEADNSNTHARYWLSKLHLKY 99 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~ 99 (282)
....++|++++.+++...++......+. +......++ +++++.++.++++.+|.+..+|++-+.++...
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R-~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCR-REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHH-HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3456788888888887555443332222 111111222 88999999999999999999999999888865
Q ss_pred CCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC----
Q 023425 100 HVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTG---- 171 (282)
Q Consensus 100 ~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g---- 171 (282)
+ ..++++++.++.++++ +.+..|+..-+.++...+ ..++++++++.++++. .+..|++..|.++..-
T Consensus 121 ~--~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~---~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 121 P--EPNWARELELCARFLEADERNFHCWDYRRFVAAQAA---VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp S--SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC---CCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred c--cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 2 1267899999999985 468889999888877643 1458899999999887 6899999999887651
Q ss_pred ------CCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC
Q 023425 172 ------DCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGV 208 (282)
Q Consensus 172 ------~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~ 208 (282)
....+.++++++++.+|+.. ++..+++.++.++..+.
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 11236688999999999764 67889999999887753
No 183
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.61 E-value=6.7e-08 Score=75.54 Aligned_cols=88 Identities=19% Similarity=0.086 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCc------CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC-CCC
Q 023425 106 KAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYV------QSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTG-DCV 174 (282)
Q Consensus 106 ~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~------~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g-~g~ 174 (282)
+++|+..|++|+ +++++++++++|.++...++.. +.+++|+..|++|++. .+++|+++||.+|..- .-+
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~ 97 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT 97 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence 589999999997 5689999999999988643321 2357999999999988 6899999999999861 000
Q ss_pred ------ccCHHHHHHHHHHHHHcCC
Q 023425 175 ------KKDIASALWCFHRASEKGH 193 (282)
Q Consensus 175 ------~~d~~~A~~~~~~A~~~g~ 193 (282)
.+++++|+.+|++|++...
T Consensus 98 P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 98 PDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cchhhhhccHHHHHHHHHHHHHhCC
Confidence 1489999999999988754
No 184
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.61 E-value=1.2e-08 Score=92.56 Aligned_cols=153 Identities=12% Similarity=0.007 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFY 147 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~ 147 (282)
+++|..++++. ++|.+|..||..+... .+.++|+..|.++ .++.++..++..+..-+ ++++|+.
T Consensus 19 ld~A~~fae~~-----~~~~vWs~La~A~l~~----g~~~eAIdsfika---~D~~~y~~V~~~ae~~g----~~EeAi~ 82 (449)
T 1b89_A 19 LDRAYEFAERC-----NEPAVWSQLAKAQLQK----GMVKEAIDSYIKA---DDPSSYMEVVQAANTSG----NWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC-----CChHHHHHHHHHHHHc----CCHHHHHHHHHcC---CCHHHHHHHHHHHHhCC----CHHHHHH
Confidence 45555555555 2344555555555544 2235555555442 34445555554444422 2255555
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 148 YIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 148 ~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
|++.+.+. .++.....|+.+|.. .+++.++..+++. ++..++..+|..+.. .+.++.|..+|.++
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~K----lg~l~e~e~f~~~----pn~~a~~~IGd~~~~----~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALAK----TNRLAELEEFING----PNNAHIQQVGDRCYD----EKMYDAAKLLYNNV-- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTTC----C--------------------CTTTHHHHHHHT--
T ss_pred HHHHHHHhCccchhHHHHHHHHHH----hCCHHHHHHHHcC----CcHHHHHHHHHHHHH----cCCHHHHHHHHHHh--
Confidence 55544443 223334445555544 4555555544432 223355555555554 45555555555544
Q ss_pred HHchhch--hccCCCHHHHHHHHHHH
Q 023425 227 KARANLE--SNLMNPVEKAKEQFEVA 250 (282)
Q Consensus 227 ~a~~~lg--~~~~~~~~~A~~~~~~A 250 (282)
..+..++ ....+++++|++.|++|
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 2222333 23444555555555555
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.58 E-value=1.8e-07 Score=68.81 Aligned_cols=96 Identities=10% Similarity=-0.018 Sum_probs=74.7
Q ss_pred ccchHHHHHHHHHHhhhh--hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHH
Q 023425 30 HSRNKKAMELIAKGWSAL--KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~ 107 (282)
.+++++|+++|.+++... .+......+..+..+...+++++|+.+|+++++.+|+++.+++++|.++... .+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL----GRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc----CCHH
Confidence 467889999999998852 3444566666666666778899999999999999999999999999999976 5779
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHH
Q 023425 108 MGAALLVDAAN--MGDPDAQYELG 129 (282)
Q Consensus 108 ~A~~~~~~Aa~--~g~~~A~~~Lg 129 (282)
+|+.+|+++++ +++++......
T Consensus 79 ~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHH
Confidence 99999999984 56766554333
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.58 E-value=2.3e-06 Score=80.73 Aligned_cols=133 Identities=8% Similarity=-0.122 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCC------CcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCc
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVP------GACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYV 139 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~------~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~ 139 (282)
.++|++++.++++.+|.+..+|+.-+.++...+.. ...+++++.++.++++ +.+..+++.-+-++...+ .
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~--~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP--E 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS--S
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--c
Confidence 47899999999999999999999999998754211 0117999999999984 679999999999888743 1
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCcc-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 140 QSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKK-DIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 140 ~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
.++++++.++.++++. .+..|+...+.++.. .+ .++++++++.++++. .+..|+++.|.++..
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~----l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHH----cCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 2569999999999997 689999999999887 55 789999999999886 579999999999876
No 187
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.53 E-value=6.7e-07 Score=61.79 Aligned_cols=76 Identities=26% Similarity=0.336 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHH
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAA 197 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~ 197 (282)
+.+++.+|.++.. ..++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. +++.++
T Consensus 9 ~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCHHHH
Confidence 3445555555554 22335555555555543 345555555555555 55555555555555443 345555
Q ss_pred HHHHHHHH
Q 023425 198 IAYGSLLL 205 (282)
Q Consensus 198 ~~Lg~~y~ 205 (282)
.++|.++.
T Consensus 81 ~~l~~~~~ 88 (91)
T 1na3_A 81 QNLGNAKQ 88 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 188
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.53 E-value=1.7e-06 Score=63.00 Aligned_cols=89 Identities=16% Similarity=0.064 Sum_probs=72.1
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 023425 108 MGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 108 ~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
.|+..|+++++ +.++.+++++|.+|.. ..++++|+.+|+++++. .++.+++.||.+|.. .+++++|+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE----HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG----QGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----cCCHHHHHH
Confidence 57788999874 5789999999999988 44559999999999886 678999999999998 899999999
Q ss_pred HHHHHHHc----CCHHHHHHHHHHH
Q 023425 184 CFHRASEK----GHAGAAIAYGSLL 204 (282)
Q Consensus 184 ~~~~A~~~----g~~~a~~~Lg~~y 204 (282)
+|+++++. ++..+...+...+
T Consensus 75 ~~~~al~~~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 75 AWESGLAAAQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHHHHHHHH
Confidence 99998764 4555555554444
No 189
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.49 E-value=1.3e-06 Score=62.46 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----
Q 023425 82 DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ---- 155 (282)
Q Consensus 82 ~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~---- 155 (282)
+|+++.+++.||.+|... .++++|+.+|+++++ +.++.++++||.+|... .++++|+.+|+++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~----g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKH----DNASRALALFEELVETDPDYVGTYYHLGKLYERL----DRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhhhcC
Confidence 456666666666666544 355666666666653 34556666666666552 3336666666665543
Q ss_pred CCHHHHHHHHHHH
Q 023425 156 LHPGALYLLGTVY 168 (282)
Q Consensus 156 g~~~A~~~Lg~~y 168 (282)
++..+...+..++
T Consensus 75 ~~~~~~~~l~~~l 87 (100)
T 3ma5_A 75 GTQKDLSELQDAK 87 (100)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHH
Confidence 3444444444443
No 190
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.49 E-value=1.2e-06 Score=62.67 Aligned_cols=81 Identities=20% Similarity=0.241 Sum_probs=67.3
Q ss_pred hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----
Q 023425 118 NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK---- 191 (282)
Q Consensus 118 ~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---- 191 (282)
+++++.+++.||.+|.. ..++++|+.+|+++++. .++.+++.||.+|.. .+++++|+.+|+++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLK----HDNASRALALFEELVETDPDYVGTYYHLGKLYER----LDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhhcC
Confidence 46789999999999998 44559999999999987 689999999999999 89999999999999763
Q ss_pred CCHHHHHHHHHHHHc
Q 023425 192 GHAGAAIAYGSLLLR 206 (282)
Q Consensus 192 g~~~a~~~Lg~~y~~ 206 (282)
++..+...+..++..
T Consensus 75 ~~~~~~~~l~~~l~~ 89 (100)
T 3ma5_A 75 GTQKDLSELQDAKLK 89 (100)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 667777777766654
No 191
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.49 E-value=2.5e-05 Score=68.44 Aligned_cols=191 Identities=8% Similarity=-0.152 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC-CCc-----CHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCc
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHV-PGA-----CKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYV 139 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~-~~~-----~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~ 139 (282)
.++|+.++.+++..+|.+..+++.-+.++...+. ..+ .+++++.++..++. +.+..+++.-+.++...+.
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~-- 123 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE-- 123 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS--
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc--
Confidence 4689999999999999999999999998874321 111 15789999999984 6799999999988876432
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC-----
Q 023425 140 QSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKD-IASALWCFHRASEK--GHAGAAIAYGSLLLRGVQ----- 209 (282)
Q Consensus 140 ~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d-~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g----- 209 (282)
.++++++.++.++++. .+..|+...+.+... .+. +++++.++.++++. .+..|+.+.+.++..-..
T Consensus 124 ~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~----l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 124 PNWARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 2579999999999987 689999999999877 455 68999999999886 579999999988875311
Q ss_pred -----CcccHHHHHHHHHHHHH------HHchhch-hc--cC----------CCHHHHHHHHHHHHHhccHHHHHHHHH
Q 023425 210 -----VPECLTKLNAKRVSAAK------KARANLE-SN--LM----------NPVEKAKEQFEVAAQAGCNLGLRWLQR 264 (282)
Q Consensus 210 -----~~~~~~~A~~~~~~a~~------~a~~~lg-~~--~~----------~~~~~A~~~~~~Aa~~g~~~a~~~l~~ 264 (282)
....+++++.++.+++. .+|+.+. .+ .. +-+++++.++.+..+.-+......+..
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 12557889999999987 4675443 21 11 247899999999998876555444443
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.47 E-value=1.3e-06 Score=60.28 Aligned_cols=78 Identities=21% Similarity=0.163 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPG 159 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~ 159 (282)
.++.+++.+|.++... .++++|+.+|+++++ +.++.+++++|.++.. ..++++|+.+|+++++. +++.
T Consensus 7 ~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~ 78 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQ----GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAE 78 (91)
T ss_dssp HHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCHH
Confidence 3566777777777654 466777777777764 4567777777777776 33447777777777765 5677
Q ss_pred HHHHHHHHHh
Q 023425 160 ALYLLGTVYL 169 (282)
Q Consensus 160 A~~~Lg~~y~ 169 (282)
++.++|.++.
T Consensus 79 ~~~~l~~~~~ 88 (91)
T 1na3_A 79 AKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777664
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.5e-07 Score=67.72 Aligned_cols=61 Identities=8% Similarity=-0.073 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 87 HARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 87 ~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
.+++.+|.++... +++++|+.+|+++++ +.++.+++++|.+|.. ..++++|+.+|+++++.
T Consensus 5 ~~~~~~g~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQ----GLYREAVHCYDQLITAQPQNPVGYSNKAMALIK----LGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHh
Confidence 3444444444432 334444444444432 2344444444444444 22224444444444443
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.39 E-value=3e-06 Score=60.66 Aligned_cols=78 Identities=9% Similarity=-0.035 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--C---
Q 023425 121 DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--H--- 193 (282)
Q Consensus 121 ~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~--- 193 (282)
++++++.+|.++.. ..++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++.. +
T Consensus 3 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFK----QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK----LGEYTQAIQMCQQGLRYTSTAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSCSSTTSH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCccHH
Confidence 46789999999998 45559999999999987 689999999999999 899999999999998863 4
Q ss_pred ---HHHHHHHHHHHHc
Q 023425 194 ---AGAAIAYGSLLLR 206 (282)
Q Consensus 194 ---~~a~~~Lg~~y~~ 206 (282)
+.+++.+|.++..
T Consensus 75 ~~~~~~~~~~~~~~~~ 90 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGA 90 (111)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788899988875
No 195
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.36 E-value=9e-06 Score=71.96 Aligned_cols=139 Identities=14% Similarity=-0.041 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC---CCCCcCHHHHH
Q 023425 34 KKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKY---HVPGACKAMGA 110 (282)
Q Consensus 34 ~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~---~~~~~~~~~A~ 110 (282)
-.|.+.|.+|...+.. +...++.+|+.+|++|++.+|+++.++-.++.+|... +........+.
T Consensus 194 ~~Aydl~Lra~~~l~~-------------~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l 260 (372)
T 3ly7_A 194 GALLTNFYQAHDYLLH-------------GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAAL 260 (372)
T ss_dssp GGGHHHHHHHHHHHHH-------------CSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHH
Confidence 4566766666442221 2356689999999999999999999999988887522 11111122222
Q ss_pred H-HHHHHH----hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 111 A-LLVDAA----NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL-HPGALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 111 ~-~~~~Aa----~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
. -++.+. .+.++.++..++..+.. ..++++|+.++++|...+ +..++..+|.++.. .|++++|++.
T Consensus 261 ~~a~~a~~a~~~~~~~a~~~~alal~~l~----~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~----~G~~~eA~e~ 332 (372)
T 3ly7_A 261 NTEIDNIVTLPELNNLSIIYQIKAVSALV----KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM----KGMNREAADA 332 (372)
T ss_dssp HHHHHHHHTCGGGTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----CCCHHHHHHH
Confidence 2 222211 25678888888887776 345599999999999884 56667788999988 8999999999
Q ss_pred HHHHHHcCC
Q 023425 185 FHRASEKGH 193 (282)
Q Consensus 185 ~~~A~~~g~ 193 (282)
|.+|.....
T Consensus 333 ~~~AlrL~P 341 (372)
T 3ly7_A 333 YLTAFNLRP 341 (372)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHhcCC
Confidence 999988754
No 196
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.33 E-value=0.00014 Score=64.15 Aligned_cols=171 Identities=10% Similarity=-0.082 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcC-CCCcCCHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVE-NDYVQSDQQ 144 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g-~~~~~d~~~ 144 (282)
.++|++++.++++.+|.+..+++.-+.++...+ .+.++++.++.+++. +.+..+++.-+.++... + .++++
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~---~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~---~~~~~ 143 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLN---KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP---QDPVS 143 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---SCCHH
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC---CChHH
Confidence 468999999999999999999999999998653 368999999999985 57999999999888764 2 13489
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHH--------HHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcc
Q 023425 145 AFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIA--------SALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 145 A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~--------~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~ 212 (282)
++.++.++++. .+..|+...+.++.. .+.++ ++++++.++++. .+..|+.+.+.++..-.+...
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~----l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSH----FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHH----HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccccc
Confidence 99999999987 689999998888765 33344 999999999886 579999999999876432111
Q ss_pred cHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhh
Q 023425 213 CLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEEKR 271 (282)
Q Consensus 213 ~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~~~ 271 (282)
+.. .+++++.++.+++... +..+..++..+.....+
T Consensus 220 ~~~-----------------------~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSR-----------------------SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHH-----------------------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred chH-----------------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 100 1256777777777654 67777777776665443
No 197
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.25 E-value=3.1e-05 Score=68.27 Aligned_cols=174 Identities=7% Similarity=-0.122 Sum_probs=128.9
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIP-LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
+..++|++++.+.+...+.......+.. ......+ ++++++.++.+++..+|.+..+++.-+.++....+ .+.+++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~-~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~--~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRF-SLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP--QDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--SCCHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC--CChHHH
Confidence 3467899999998876654443333221 1111123 69999999999999999999999999999886511 245899
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCC----cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC---CccCH
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDY----VQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDC---VKKDI 178 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~----~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g---~~~d~ 178 (282)
+.++.++++ +.+..|++.-+.++..-+.. .....++++++.++++. .+..|++..+.++..-.. ....+
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHH
Confidence 999999985 46889999888776543222 11235999999999987 699999999999877321 12237
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHcC
Q 023425 179 ASALWCFHRASEK--GHAGAAIAYGSLLLRG 207 (282)
Q Consensus 179 ~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g 207 (282)
+++++++++++.. ++..+++.+..++...
T Consensus 225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 8999999999865 6899998888777754
No 198
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.06 E-value=9.5e-05 Score=64.05 Aligned_cols=178 Identities=11% Similarity=0.043 Sum_probs=113.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----CCHHHHHHHHHHHhcCCCCcCCHHHHH
Q 023425 71 AKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM----GDPDAQYELGCRLRVENDYVQSDQQAF 146 (282)
Q Consensus 71 A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~~g~~~~~d~~~A~ 146 (282)
|+..|++.++..+..+.+.+.+|.++... +++++|++|+.+.++. ++.++...++.++...++. +.|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~----g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~----d~A~ 156 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAIL----GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV----STAS 156 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH----HHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHc----CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH----HHHH
Confidence 67778877755556677778888888754 5778888888888765 4678888888888885555 8888
Q ss_pred HHHHHHHHcCC------HHHHHHHHHH--Hhc-CCCCccCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCCCccc
Q 023425 147 YYIEKAVDQLH------PGALYLLGTV--YLT-GDCVKKDIASALWCFHRASEKGH----AGAAIAYGSLLLRGVQVPEC 213 (282)
Q Consensus 147 ~~~~kAa~~g~------~~A~~~Lg~~--y~~-g~g~~~d~~~A~~~~~~A~~~g~----~~a~~~Lg~~y~~g~g~~~~ 213 (282)
+.+++..+... -.....|+.. .+. | .+++..|+..|++.++... +...++ +++. .++
T Consensus 157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g---~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~----~g~ 226 (310)
T 3mv2_B 157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATN---KETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ----QRN 226 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHT---CSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH----HTC
T ss_pred HHHHHHHhcCccccccchHHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH----cCC
Confidence 88887766543 3445555533 222 1 2468888888888766543 223333 6666 788
Q ss_pred HHHHHHHHHHHHH----------------HHchhc---hhccCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHH
Q 023425 214 LTKLNAKRVSAAK----------------KARANL---ESNLMNPVEKAKEQFEVAAQAG-CNLGLRWLQRIEEEE 269 (282)
Q Consensus 214 ~~~A~~~~~~a~~----------------~a~~~l---g~~~~~~~~~A~~~~~~Aa~~g-~~~a~~~l~~l~~~~ 269 (282)
+++|...++...+ .+..|+ +.. .++ .|.++++++.+.. +.+....+.......
T Consensus 227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~-lgk--~a~~l~~qL~~~~P~hp~i~d~~~k~~~F 299 (310)
T 3mv2_B 227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM-QGL--DTEDLTNQLVKLDHEHAFIKHHQEIDAKF 299 (310)
T ss_dssp HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH-TTC--TTHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH-hCh--HHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 8888777764322 122233 222 233 6788888888866 333333344444333
No 199
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.06 E-value=4.1e-05 Score=55.14 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ---------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK- 191 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~---------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~- 191 (282)
+.-++.||..++. .+++..|+.||++|.+. ..+..+..||.+|.. .+++++|+.++++|+..
T Consensus 5 a~dc~~lG~~~~~----~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~----~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH----ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcC
Confidence 4556666666666 44446666666666653 235666777777777 77777787777777654
Q ss_pred -CCHHHHHHHH
Q 023425 192 -GHAGAAIAYG 201 (282)
Q Consensus 192 -g~~~a~~~Lg 201 (282)
.++.+..+++
T Consensus 77 P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 PEHQRANGNLK 87 (104)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHhhHH
Confidence 4666666666
No 200
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.02 E-value=0.00014 Score=62.11 Aligned_cols=110 Identities=10% Similarity=0.011 Sum_probs=83.4
Q ss_pred HcCCCCHHHHHHHHHHHhcC-----C--CCCcCHHHHHHHHHHHHhC--C--CHHHHHHHHHHHhcCCCC-cCCHHHHHH
Q 023425 80 EADNSNTHARYWLSKLHLKY-----H--VPGACKAMGAALLVDAANM--G--DPDAQYELGCRLRVENDY-VQSDQQAFY 147 (282)
Q Consensus 80 ~~~~g~~~a~~~Lg~~~~~~-----~--~~~~~~~~A~~~~~~Aa~~--g--~~~A~~~Lg~~y~~g~~~-~~d~~~A~~ 147 (282)
+.+|+++++++++|.....- + +.-...+.|...+++|++. . +..|+..||.+|..--.. -.|.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 35788999999999986531 1 2224468899999999865 3 466999999998772111 135599999
Q ss_pred HHHHHHHc--C-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 148 YIEKAVDQ--L-HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 148 ~~~kAa~~--g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
+|++|++. + ++.+.+..|..+... .+|.+.|..++++|+...
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~---~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIP---LNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTT---TTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHh---cCCHHHHHHHHHHHHcCC
Confidence 99999987 3 499999999988761 388999999999998754
No 201
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.96 E-value=0.00021 Score=61.84 Aligned_cols=130 Identities=12% Similarity=0.040 Sum_probs=70.0
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 023425 109 GAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LHPGALYLLGTVYLTGDCVKKDIASAL 182 (282)
Q Consensus 109 A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~~~A~~~Lg~~y~~g~g~~~d~~~A~ 182 (282)
|+..|++.++. ....+.+.+|.++.. ..++++|+.|+.+.+.. ++.++...++.+|.. .++++.|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~----~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~----~~r~d~A~ 156 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAI----LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL----NNNVSTAS 156 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH----CCCHHHHH
Confidence 44555555532 345555666666666 44446666666666554 356666666666666 66666666
Q ss_pred HHHHHHHHcCC------HHHHHHHHHH--HHc-CCCCcccHHHHHHHHHHHHHH--------HchhchhccCCCHHHHHH
Q 023425 183 WCFHRASEKGH------AGAAIAYGSL--LLR-GVQVPECLTKLNAKRVSAAKK--------ARANLESNLMNPVEKAKE 245 (282)
Q Consensus 183 ~~~~~A~~~g~------~~a~~~Lg~~--y~~-g~g~~~~~~~A~~~~~~a~~~--------a~~~lg~~~~~~~~~A~~ 245 (282)
+.+++..+... ......|+.. ... | ..++..|+..|+...+. ..++ ..+..+++++|..
T Consensus 157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g---~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATN---KETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHT---CSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH
T ss_pred HHHHHHHhcCccccccchHHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH
Confidence 66666544432 3334444422 221 1 12455666666665441 1112 2345566666666
Q ss_pred HHHHH
Q 023425 246 QFEVA 250 (282)
Q Consensus 246 ~~~~A 250 (282)
.+++.
T Consensus 233 ~L~~l 237 (310)
T 3mv2_B 233 IVELL 237 (310)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 202
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.93 E-value=0.00015 Score=56.04 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhcCCCCcC
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG----DPDAQYELGCRLRVENDYVQ 140 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~g~~~~~ 140 (282)
+..+..+.+-|.+.++.++.++++.|++|..+.... .+.+.++++..++..++.+ +.+++|+||..+.. .+
T Consensus 11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~-~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k----l~ 85 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSK-YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----LK 85 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH----TS
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH----cc
Confidence 445677777777777767777888888888777642 2245677777777777654 35677777777666 45
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHH
Q 023425 141 SDQQAFYYIEKAVDQ--LHPGALYLL 164 (282)
Q Consensus 141 d~~~A~~~~~kAa~~--g~~~A~~~L 164 (282)
|+++|+.|++++.+. ++..|....
T Consensus 86 ~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 86 EYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 557777777777665 455555443
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.89 E-value=6.3e-05 Score=69.53 Aligned_cols=112 Identities=12% Similarity=0.015 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHHH-----cCCCCH---HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-------CCCH---HHHHH
Q 023425 66 PLLKTAKENFELALE-----ADNSNT---HARYWLSKLHLKYHVPGACKAMGAALLVDAAN-------MGDP---DAQYE 127 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~-----~~~g~~---~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-------~g~~---~A~~~ 127 (282)
+++++|+..|+++++ +.+.|| .++.+||.+|... .++++|+.+++++++ ..+| .++++
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~----g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL----QAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 458899999988887 455565 4677788888765 577888888888864 2233 46777
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc-------CCH---HHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ-------LHP---GALYLLGTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-------g~~---~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
||.+|...+.+ ++|..+|++|.+. +|| +....|+.++.. .+.+++|...|+++-
T Consensus 399 La~~~~~~G~~----~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e----~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHI----EVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME----LRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCH----HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCH----HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 88888875555 8888888887763 343 333566777766 677777777777663
No 204
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.84 E-value=0.00015 Score=52.07 Aligned_cols=73 Identities=15% Similarity=0.026 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM---------GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 85 ~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~---------g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
++.-++.||..+... +++..|+.||++|.+. ..++.+..||.+|...+. +++|+.+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~----~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~----~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTE----ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD----LDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc----cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC----HHHHHHHHHHHHhc
Confidence 567789999998866 6889999999999852 247788999999998444 49999999999876
Q ss_pred --CCHHHHHHHH
Q 023425 156 --LHPGALYLLG 165 (282)
Q Consensus 156 --g~~~A~~~Lg 165 (282)
.++.+..+++
T Consensus 76 ~P~~~~~~~n~~ 87 (104)
T 2v5f_A 76 DPEHQRANGNLK 87 (104)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCHHHHhhHH
Confidence 6888888887
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.83 E-value=4e-05 Score=53.76 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTH-ARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYE 127 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~-a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~ 127 (282)
+++++|+..|+++++.+|.++. +++.+|.+|... .++++|+.+|+++++ ++++.++++
T Consensus 14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL----GDWQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4599999999999999999999 999999999865 577999999999985 567777643
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.76 E-value=0.0003 Score=60.04 Aligned_cols=93 Identities=14% Similarity=0.032 Sum_probs=78.5
Q ss_pred cCCCchhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHhcCC-CCCcCHHHHHHHHHHHHh--CC-CHHHHHHHHHHHh
Q 023425 60 NDRRLIPLLKTAKENFELALEADNS--NTHARYWLSKLHLKYH-VPGACKAMGAALLVDAAN--MG-DPDAQYELGCRLR 133 (282)
Q Consensus 60 ~~~~~~~~~~~A~~~~~~a~~~~~g--~~~a~~~Lg~~~~~~~-~~~~~~~~A~~~~~~Aa~--~g-~~~A~~~Lg~~y~ 133 (282)
.+.+......+|...+++|++++|. ++.++..||.+|..-. ....+.++|.++|++|++ ++ ++++.+.+|..+.
T Consensus 171 gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 171 LGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC 250 (301)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 4577889999999999999999999 7789999999999742 123688999999999985 44 5999999999987
Q ss_pred cCCCCcCCHHHHHHHHHHHHHc
Q 023425 134 VENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 134 ~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
.. ..|.+.|..++++|...
T Consensus 251 ~~---~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 251 IP---LNNRAGFDEALDRALAI 269 (301)
T ss_dssp TT---TTCHHHHHHHHHHHHHC
T ss_pred Hh---cCCHHHHHHHHHHHHcC
Confidence 62 14569999999999986
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.73 E-value=0.0004 Score=64.14 Aligned_cols=110 Identities=11% Similarity=-0.053 Sum_probs=85.1
Q ss_pred cCHHHHHHHHHHHHh-------CCC---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-------CC---HHHHHH
Q 023425 104 ACKAMGAALLVDAAN-------MGD---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-------LH---PGALYL 163 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~-------~g~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-------g~---~~A~~~ 163 (282)
.++++|+..|+++.+ ..+ ..++.+||.+|...+.. ++|+.+++++.+. .| ..++.+
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~----~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAY----EEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 478999999999975 124 46889999999985544 9999999999874 34 467789
Q ss_pred HHHHHhcCCCCccCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 164 LGTVYLTGDCVKKDIASALWCFHRASEK-------GH---AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 164 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-------g~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
||.+|.. .+++++|+.+|++|++. ++ .+...+|+.++.. .+.+..|...|.++-
T Consensus 399 La~~~~~----~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e----~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWH----AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME----LRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHH----CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 9999999 89999999999999762 34 3446778888876 666776666665553
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.68 E-value=0.00027 Score=49.36 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHH-HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHH
Q 023425 126 YELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPG-ALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAA 197 (282)
Q Consensus 126 ~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~-A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~ 197 (282)
+.+|..+.. ..++++|+.+|+++++. .++. +++.+|.+|.. .+++++|+.+|+++++.. ++.++
T Consensus 4 ~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELIN----QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK----LGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 445666665 34447777777777665 4566 77777777777 677777777777776643 34444
No 209
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.68 E-value=0.003 Score=60.59 Aligned_cols=173 Identities=7% Similarity=-0.040 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHH-HHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGA-ALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~-~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~ 144 (282)
.+.....|++|+...|.+++.|+.++..+...+.. ++|. ..|++|+. +.+..-+..++.+....+ +.++
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~----~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~----~~e~ 396 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTD----STVITKYLKLGQQCIPNSAVLAFSLSEQYELNT----KIPE 396 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCC----TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcH----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC----CHHH
Confidence 34567889999999999999999999998865433 6786 99999986 456666777888877744 4599
Q ss_pred HHHHHHHHHHcC------------------------CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-C--CHHHH
Q 023425 145 AFYYIEKAVDQL------------------------HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-G--HAGAA 197 (282)
Q Consensus 145 A~~~~~kAa~~g------------------------~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-g--~~~a~ 197 (282)
|...|+++.+.. .+..+.....+... .++.+.|...|.+|.+. + ....+
T Consensus 397 aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR----~~~l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 397 IETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR----IQGLAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCChHHH
Confidence 999999998741 12234444444444 57789999999999987 3 34455
Q ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHH----ch--hch--hccCCCHHHHHHHHHHHHHhcc
Q 023425 198 IAYGSLLLRGVQVPECLTKLNAKRVSAAKKA----RA--NLE--SNLMNPVEKAKEQFEVAAQAGC 255 (282)
Q Consensus 198 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a----~~--~lg--~~~~~~~~~A~~~~~~Aa~~g~ 255 (282)
...+.+-.. ..++.+.|...|+++++.- .+ ..+ ....++.+.|+.+|++|+....
T Consensus 473 i~~A~lE~~---~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 473 LENAYIEYH---ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHT---TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHH---hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 555555544 1356889999999998831 11 111 1245789999999999998765
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.66 E-value=0.00021 Score=50.39 Aligned_cols=69 Identities=13% Similarity=-0.088 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 82 DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 82 ~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
+|.+|+.++.+|.++....+. ...++|..++++|+ ++.++.|.+.||..++. ..++++|+.+|++..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~-~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~----~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQ-AMTDEVSLLLEQALQLEPYNEAALSLIANDHFI----SFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTT-CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence 345555555555555322110 12355555555554 34455555555555555 22335555555555544
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.65 E-value=0.00035 Score=49.29 Aligned_cols=71 Identities=10% Similarity=0.026 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCH
Q 023425 119 MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHA 194 (282)
Q Consensus 119 ~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~ 194 (282)
+.+++.+..+|.++....+ ....++|..++++|... .++.|.+.||..++. .+++++|+.+|++.++....
T Consensus 3 p~~~~~~~~~a~al~~~~~-~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~----~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHK-QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI----SFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTT-TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Confidence 5678889999987754222 12248999999999887 789999999999998 89999999999999887654
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.56 E-value=0.00053 Score=52.87 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=72.2
Q ss_pred cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHhcCCCCccC
Q 023425 104 ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL----HPGALYLLGTVYLTGDCVKKD 177 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~g~g~~~d 177 (282)
.+...+.+.|.+..+ ..++++.|++|.++.... .+.+.++++..++...+.. +.+++|+||..|.. .+|
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~-~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k----l~~ 86 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSK-YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----LKE 86 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH----TSC
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH----ccC
Confidence 345667777888776 447899999999998833 2446689999999999886 46899999999988 899
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHH
Q 023425 178 IASALWCFHRASEK--GHAGAAIAY 200 (282)
Q Consensus 178 ~~~A~~~~~~A~~~--g~~~a~~~L 200 (282)
+++|+.+++++++. ++..|..-.
T Consensus 87 Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 87 YEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999998764 556665443
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.52 E-value=0.00096 Score=58.99 Aligned_cols=137 Identities=9% Similarity=-0.101 Sum_probs=91.3
Q ss_pred cCCCCHHHHHH--HHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhc--CC-CCcCCHHHHHH-HHHHH
Q 023425 81 ADNSNTHARYW--LSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRV--EN-DYVQSDQQAFY-YIEKA 152 (282)
Q Consensus 81 ~~~g~~~a~~~--Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~--g~-~~~~d~~~A~~-~~~kA 152 (282)
..|.+++|+-. -|.-+... ..+.+..+|+.+|++|+ +++++.|+..++.+|.. +. ....+...++. -+..+
T Consensus 189 ~~p~~~~Aydl~Lra~~~l~~-~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 189 ILPHRGALLTNFYQAHDYLLH-GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp HSCSSGGGHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 35666666543 34433322 23467799999999997 57899999988877742 11 11111112222 22221
Q ss_pred HH----cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 153 VD----QLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG-HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 153 a~----~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.. ..++.++..++.++.. .+++++|+.++++|+..+ +..++..+|.++.. .+++++|...|++|..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~----~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~----~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALV----KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM----KGMNREAADAYLTAFN 338 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHh
Confidence 11 2678888889888877 799999999999998875 45567788999887 7788777777777665
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.49 E-value=0.0004 Score=63.14 Aligned_cols=81 Identities=15% Similarity=-0.036 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHH-----cCCCCHH---HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-----CC--CH---HHHHH
Q 023425 66 PLLKTAKENFELALE-----ADNSNTH---ARYWLSKLHLKYHVPGACKAMGAALLVDAAN-----MG--DP---DAQYE 127 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~-----~~~g~~~---a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-----~g--~~---~A~~~ 127 (282)
+++++|+..|+++++ +.|.||. ++.+||.+|... .++++|+.+++++++ .| +| .++++
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~----g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM----QDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 457888888888876 4455553 455666666654 456777777777653 12 32 34555
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHH
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~ 154 (282)
||.+|...+.. ++|+.+|++|.+
T Consensus 388 La~~~~~qg~~----~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENK----AAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCH----HHHHHHHHHHHH
T ss_pred HHHHHHhccCH----HHHHHHHHHHHH
Confidence 56555554433 555555555544
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.37 E-value=0.00083 Score=61.03 Aligned_cols=81 Identities=16% Similarity=0.048 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-----C--C---HHHHHH
Q 023425 140 QSDQQAFYYIEKAVDQ-------LH---PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-----G--H---AGAAIA 199 (282)
Q Consensus 140 ~d~~~A~~~~~kAa~~-------g~---~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----g--~---~~a~~~ 199 (282)
.++++|+.+|+++.+. .| ...+.+||.+|.. .+++++|+.+++++++- | + ..++++
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY----MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 4679999999999873 24 4677899999999 89999999999999763 3 3 557999
Q ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHHH
Q 023425 200 YGSLLLRGVQVPECLTKLNAKRVSAAKKA 228 (282)
Q Consensus 200 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a 228 (282)
||.+|.. .+++++|..+|++|.+.-
T Consensus 388 La~~~~~----qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 388 LGRLYMG----LENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHh----ccCHHHHHHHHHHHHHHH
Confidence 9999998 788888888887776543
No 216
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.35 E-value=0.0033 Score=60.37 Aligned_cols=205 Identities=8% Similarity=-0.086 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Q 023425 34 KKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAK-ENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAAL 112 (282)
Q Consensus 34 ~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~ 112 (282)
++....|.+++..+...... -+.+.......++.++|. ..|++|+...|.++.-+..++.+.... .+.+.|...
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~l-W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~----~~~e~aR~i 400 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEI-WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELN----TKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHH-HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----CCHHHHHHH
Confidence 34455666666655432221 111111112224467886 999999999999888888888888865 356899999
Q ss_pred HHHHHhCC------------------------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-C--CHHHHHHHH
Q 023425 113 LVDAANMG------------------------DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-L--HPGALYLLG 165 (282)
Q Consensus 113 ~~~Aa~~g------------------------~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-g--~~~A~~~Lg 165 (282)
|+++++.. .+..+..+..+.... .+.+.|...|.+|.+. . ....+...+
T Consensus 401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~----~~l~~AR~vf~~A~~~~~~~~~~lyi~~A 476 (679)
T 4e6h_A 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI----QGLAASRKIFGKCRRLKKLVTPDIYLENA 476 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH----HCHHHHHHHHHHHHHTGGGSCTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 99988631 122455555554443 3348999999999876 3 344555555
Q ss_pred HHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHch--hc-------h-
Q 023425 166 TVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARA--NL-------E- 233 (282)
Q Consensus 166 ~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~--~l-------g- 233 (282)
.+-.. ..++++.|...|+++++. .++.-+...+.+... .++.+.|..+|++|+...-. .. -
T Consensus 477 ~lE~~---~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~----~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~ 549 (679)
T 4e6h_A 477 YIEYH---ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY----VNEESQVKSLFESSIDKISDSHLLKMIFQKVIF 549 (679)
T ss_dssp HHHHT---TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHHHH---hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 55444 135689999999999885 455555556665555 57889999999998763220 00 0
Q ss_pred -hccCCCHHHHHHHHHHHHHhc
Q 023425 234 -SNLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 234 -~~~~~~~~~A~~~~~~Aa~~g 254 (282)
-..-|+.+.+...++++.+.-
T Consensus 550 fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 550 FESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 113445555666666666544
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.88 E-value=0.0047 Score=55.93 Aligned_cols=85 Identities=14% Similarity=0.067 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-----C--C---HHHHHHH
Q 023425 141 SDQQAFYYIEKAVDQ-------LH---PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-----G--H---AGAAIAY 200 (282)
Q Consensus 141 d~~~A~~~~~kAa~~-------g~---~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----g--~---~~a~~~L 200 (282)
++++|+..++++.+. .| ...+.+||.+|.. .+++++|+.+++++++. | + ...+++|
T Consensus 302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~----~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN----LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 569999999999874 23 5678999999998 99999999999999763 2 3 5579999
Q ss_pred HHHHHcCCCCcccHHHHHHHHHHHHHHHchhch
Q 023425 201 GSLLLRGVQVPECLTKLNAKRVSAAKKARANLE 233 (282)
Q Consensus 201 g~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg 233 (282)
|.+|.. .+++++|..+|++|.+.-...+|
T Consensus 378 a~~~~~----~g~~~eA~~~~~~Al~i~~~~lG 406 (429)
T 3qwp_A 378 GKLQLH----QGMFPQAMKNLRLAFDIMRVTHG 406 (429)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHh----cCCHHHHHHHHHHHHHHHHHhcC
Confidence 999998 78899888888777664333333
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.79 E-value=0.0019 Score=58.52 Aligned_cols=80 Identities=9% Similarity=-0.023 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHH-----cCCCCH---HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-------CCCH---HHHHHH
Q 023425 67 LLKTAKENFELALE-----ADNSNT---HARYWLSKLHLKYHVPGACKAMGAALLVDAAN-------MGDP---DAQYEL 128 (282)
Q Consensus 67 ~~~~A~~~~~~a~~-----~~~g~~---~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-------~g~~---~A~~~L 128 (282)
++++|+..|+++++ +.+.|| ..+.+||.+|... .++++|+.+++++++ ..+| ..+++|
T Consensus 302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~----g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL----GLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 47888888888875 334444 3455566666533 355666666666653 1122 344555
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHH
Q 023425 129 GCRLRVENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 129 g~~y~~g~~~~~d~~~A~~~~~kAa~ 154 (282)
|.+|...+.. ++|+.+|++|.+
T Consensus 378 a~~~~~~g~~----~eA~~~~~~Al~ 399 (429)
T 3qwp_A 378 GKLQLHQGMF----PQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHTTCH----HHHHHHHHHHHH
T ss_pred HHHHHhcCCH----HHHHHHHHHHHH
Confidence 5555553333 555555555544
No 219
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.55 E-value=0.4 Score=44.09 Aligned_cols=148 Identities=9% Similarity=-0.089 Sum_probs=76.6
Q ss_pred chhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHhcCCC-----CCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhc
Q 023425 64 LIPLLKTAKENFELALEAD-NSNTHARYWLSKLHLKYHV-----PGACKAMGAALLVDAANMG---DPDAQYELGCRLRV 134 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~-~g~~~a~~~Lg~~~~~~~~-----~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~ 134 (282)
..+++++|+..|++..+.. +.+...+..|=..+..... ...+.+.|...|.+-.+.| +...+..|-..|..
T Consensus 38 k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~ 117 (501)
T 4g26_A 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA 117 (501)
T ss_dssp TSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 3455666666666665421 1234444444334433221 1123466666666665554 44555555555555
Q ss_pred CCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC
Q 023425 135 ENDYVQSDQQAFYYIEKAVDQL---HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG---HAGAAIAYGSLLLRGV 208 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~ 208 (282)
.+. .++|+.+|.+..+.| +...+..|=..|-. .++.++|.+.|+.-.+.| +...+..|-..|..
T Consensus 118 ~g~----~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~-- 187 (501)
T 4g26_A 118 KDD----PEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR----KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD-- 187 (501)
T ss_dssp HTC----HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--
T ss_pred cCC----HHHHHHHHHHHHHcCCCCccceehHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh--
Confidence 333 366666666666554 44455555445544 566666666666666654 34445455444444
Q ss_pred CCcccHHHHHHHHHH
Q 023425 209 QVPECLTKLNAKRVS 223 (282)
Q Consensus 209 g~~~~~~~A~~~~~~ 223 (282)
.++.++|...+++
T Consensus 188 --~g~~d~A~~ll~~ 200 (501)
T 4g26_A 188 --TKNADKVYKTLQR 200 (501)
T ss_dssp --TTCHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHH
Confidence 4455555554444
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.42 E-value=0.072 Score=39.44 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCH----HHHHHHHHHHhcCCCCcCCHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDP----DAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~----~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+....+-|.++...++..+++.|+++..+.... .+.+..+++..++..++.++| +..|.||.-+.. ..++.
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~-~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk----lg~Y~ 91 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTR-YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----LKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH----TTCHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH----hhhHH
Confidence 556666677776656667777777777776542 224556677777776665533 456666666655 34446
Q ss_pred HHHHHHHHHHHc--CCHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALY 162 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~ 162 (282)
+|+.+.....+. ++.+|..
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 666666666554 4444443
No 221
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.15 E-value=0.52 Score=43.30 Aligned_cols=168 Identities=11% Similarity=0.033 Sum_probs=117.6
Q ss_pred hhhcccchHHHHHHHHHHhhhhhHHHH-----HHHHHhhc----CCCchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Q 023425 26 KRWLHSRNKKAMELIAKGWSALKEVDR-----VIDYCELN----DRRLIPLLKTAKENFELALEAD-NSNTHARYWLSKL 95 (282)
Q Consensus 26 ~~~~~~~~~~A~e~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~A~~~~~~a~~~~-~g~~~a~~~Lg~~ 95 (282)
.+...++.++|+++|.......-.-+. .+..+... .....+++++|...|++..+.. +.+...+..|-..
T Consensus 35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~ 114 (501)
T 4g26_A 35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL 114 (501)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 345688999999999876553211111 11111111 1123467899999999887532 2366777777777
Q ss_pred HhcCCCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHh
Q 023425 96 HLKYHVPGACKAMGAALLVDAANMG---DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL---HPGALYLLGTVYL 169 (282)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~ 169 (282)
|... .+.++|..+|++..+.| +...+..|=..|...+.. ++|...|..-.+.| +...+..|-..|.
T Consensus 115 ~~~~----g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~----~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 115 AVAK----DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA----DKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHH----TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHhc----CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 7755 46799999999998876 677777777778775554 99999999999886 6777778888888
Q ss_pred cCCCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 023425 170 TGDCVKKDIASALWCFHRASEKG---HAGAAIAYGSLLL 205 (282)
Q Consensus 170 ~g~g~~~d~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~ 205 (282)
. .++.++|..+|++--+.| +...+..|-.+|.
T Consensus 187 ~----~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 187 D----TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp H----TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred h----CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 7 899999999999987765 3444444444443
No 222
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.80 E-value=0.41 Score=43.86 Aligned_cols=173 Identities=13% Similarity=0.020 Sum_probs=102.0
Q ss_pred hhhhhhhhHHhhhhhhhcchhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc--
Q 023425 4 QISKASTLKSAALGLLQSNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEA-- 81 (282)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-- 81 (282)
.|..|..++..++..+.. ++++++.+.|.+++...+.......|...... .....+.....|+.|+..
T Consensus 10 ~i~~aR~vyer~l~~~P~---------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~-~~~~~~~i~~~fe~al~~vg 79 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMS---------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRK-VSQKKFKLYEVYEFTLGQFE 79 (493)
T ss_dssp --CCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH-HC----CTHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHCCC---------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHcC
Confidence 477889999988888866 56899999999999877655444333322211 001234556677887753
Q ss_pred -CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCC--HH-----------------------------------
Q 023425 82 -DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGD--PD----------------------------------- 123 (282)
Q Consensus 82 -~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~----------------------------------- 123 (282)
++.++..|......+.......++.+.+...|++|+.... .+
T Consensus 80 ~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~ 159 (493)
T 2uy1_A 80 NYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQR 159 (493)
T ss_dssp TCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHH
Confidence 5666666666665544321111345667777777765211 00
Q ss_pred --------------HHHHHHHHHhcCCCC-cCC---HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 023425 124 --------------AQYELGCRLRVENDY-VQS---DQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 124 --------------A~~~Lg~~y~~g~~~-~~d---~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
.+..+.. +..+.+. ..+ .......|++++.. ..+..+...+..+.. .++.++|..
T Consensus 160 y~~~~~~~~~~s~~~W~~y~~-~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~----~~~~~~ar~ 234 (493)
T 2uy1_A 160 YQQIQPLIRGWSVKNAARLID-LEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIG----IGQKEKAKK 234 (493)
T ss_dssp HHHHHHHHHTCSHHHHHHHHH-HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHH-HHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHH
Confidence 0101010 1112211 111 34567788888874 567888888887776 678999999
Q ss_pred HHHHHHHc
Q 023425 184 CFHRASEK 191 (282)
Q Consensus 184 ~~~~A~~~ 191 (282)
.|++|+..
T Consensus 235 i~erAi~~ 242 (493)
T 2uy1_A 235 VVERGIEM 242 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99998776
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.45 E-value=0.083 Score=39.11 Aligned_cols=87 Identities=11% Similarity=0.050 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHhcCCCCccCHHH
Q 023425 107 AMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLH----PGALYLLGTVYLTGDCVKKDIAS 180 (282)
Q Consensus 107 ~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~----~~A~~~Lg~~y~~g~g~~~d~~~ 180 (282)
..+...|.++... -.+++.|++|..+.. ...+.+..+++..++.....++ -++.|.||..+.. .+++.+
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk----lg~Y~~ 92 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----LKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH----TTCHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH----hhhHHH
Confidence 5556667777663 468999999998887 3335566789999999888764 4788999999888 899999
Q ss_pred HHHHHHHHHHc--CCHHHHH
Q 023425 181 ALWCFHRASEK--GHAGAAI 198 (282)
Q Consensus 181 A~~~~~~A~~~--g~~~a~~ 198 (282)
|+.+++..++. ++..|.-
T Consensus 93 A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999988664 4566643
No 224
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.20 E-value=0.4 Score=35.69 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=49.7
Q ss_pred hhhhHHhhhhhhhcchhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHH
Q 023425 8 ASTLKSAALGLLQSNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTH 87 (282)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~ 87 (282)
.++.+.-+.+|+.|+.. .+..+++.++..-............|....++...+++++|.++.+..++.+|++..
T Consensus 40 ~qt~F~yAw~Lv~S~~~------~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDV------NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHHSSCH------HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred hhhHHHHHHHHHcCCCH------HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 45555556666666442 234566666666554444344555666666666667777777777777777777777
Q ss_pred HHHHHHH
Q 023425 88 ARYWLSK 94 (282)
Q Consensus 88 a~~~Lg~ 94 (282)
|......
T Consensus 114 A~~Lk~~ 120 (134)
T 3o48_A 114 VGALKSM 120 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654433
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.80 E-value=0.8 Score=35.44 Aligned_cols=120 Identities=13% Similarity=0.003 Sum_probs=70.8
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC-----CHHHHHHHH
Q 023425 64 LIPLLKTAKENFELALEADNSNTH---------ARYWLSKLHLKYHVPGACKAMGAALLVDAANMG-----DPDAQYELG 129 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~---------a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g-----~~~A~~~Lg 129 (282)
..+.++.|+-....++.+...+++ +++.+|..++.. +++..|...|++|++.. ++.+...++
T Consensus 32 d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~----~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~ 107 (167)
T 3ffl_A 32 AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHD----KEYRNAVSKYTMALQQKKALSKTSKVRPSTG 107 (167)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHCC-----------
T ss_pred HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcc----cHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 346677777777776655444444 666777777654 56677777777776421 222211121
Q ss_pred HHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Q 023425 130 CRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRA-SEKGHAGAAIAYGSLLL 205 (282)
Q Consensus 130 ~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A-~~~g~~~a~~~Lg~~y~ 205 (282)
. . ...+. ... ...+.+.-|.++.||.. .+++++|+..++.. .....+.....||.+|.
T Consensus 108 ~-~---ss~p~----s~~------~~~e~Elkykia~C~~~----l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 108 N-S---ASTPQ----SQC------LPSEIEVKYKLAECYTV----LKQDKDAIAILDGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp -----------------C------CCCHHHHHHHHHHHHHH----TTCHHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred c-c---CCCcc----ccc------ccchHHHHHHHHHHHHH----HCCHHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence 1 0 00000 000 01245677899999999 89999999988875 56678888888888763
No 226
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.03 E-value=7 Score=35.55 Aligned_cols=48 Identities=8% Similarity=0.042 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM 119 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~ 119 (282)
.+.....|++++...|.++..|+.++..+... .+.++|...|++|+..
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~----~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI----GQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhC
Confidence 56678899999998899999999999988765 4679999999999765
No 227
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.97 E-value=0.35 Score=44.48 Aligned_cols=64 Identities=16% Similarity=0.015 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhc
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRV 134 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~ 134 (282)
.+..|..||++|+...|+++.+++.||.+.... .+.-.|+.+|.+|. ..-++.|.-||..++..
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~----~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSK----GDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT----TCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcc----cccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 357888888888888888888888888887753 45677888888886 44578888888877753
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.20 E-value=0.82 Score=34.46 Aligned_cols=56 Identities=7% Similarity=-0.009 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHH
Q 023425 66 PLLKTAKENFELALEADN-SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQ 125 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~-g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~ 125 (282)
.+..+++..++..+...| ..-+..|.|+.-+... +++.+|.++..... ++++..|.
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl----~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL----GEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHh----hhHHHHHHHHHHHHhcCCCcHHHH
Confidence 334444444444444333 2334444455544433 34455555554443 33444443
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.18 E-value=1.2 Score=34.55 Aligned_cols=122 Identities=13% Similarity=0.112 Sum_probs=68.6
Q ss_pred ccchHHHHHHHHHHhhhhhH--------HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHhc
Q 023425 30 HSRNKKAMELIAKGWSALKE--------VDRVIDYCELNDRRLIPLLKTAKENFELALEADN---SNTHARYWLSKLHLK 98 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---g~~~a~~~Lg~~~~~ 98 (282)
.+.|+.|+-.....++.... .........++.....++|..|...|++|+.... ..+.+...++. .
T Consensus 33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~-~-- 109 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN-S-- 109 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------------
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc-c--
Confidence 56688887766654443321 1223566777778888999999999999986322 12222111211 0
Q ss_pred CCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHh
Q 023425 99 YHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKA-VDQLHPGALYLLGTVYL 169 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kA-a~~g~~~A~~~Lg~~y~ 169 (282)
........ ...+.+--|.++.||.. .+++++|+..++.. .+.-.+.-...||.+|.
T Consensus 110 -----ss~p~s~~------~~~e~Elkykia~C~~~----l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 110 -----ASTPQSQC------LPSEIEVKYKLAECYTV----LKQDKDAIAILDGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp ------------C------CCCHHHHHHHHHHHHHH----TTCHHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred -----CCCccccc------ccchHHHHHHHHHHHHH----HCCHHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence 00010000 11245677888888888 44458888877764 34466777777777663
No 230
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=89.81 E-value=0.88 Score=41.79 Aligned_cols=75 Identities=19% Similarity=0.163 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--cCCHHHHHH
Q 023425 124 AQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE--KGHAGAAIA 199 (282)
Q Consensus 124 A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--~g~~~a~~~ 199 (282)
.+..||.+..... .+..|..||.+|+.. ++...++.||.+... .++.-+|+-||.+++- ...+.|.-|
T Consensus 154 ~l~~LGDL~RY~~----~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~----~~~~l~a~y~y~rsl~~~~Pf~~a~~n 225 (497)
T 1ya0_A 154 CLVHLGDIARYRN----QTSQAESYYRHAAQLVPSNGQPYNQLAILASS----KGDHLTTIFYYCRSIAVKFPFPAASTN 225 (497)
T ss_dssp HHHHHHHHHHHTT----CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH----TTCHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred HHHHcccHHHHHH----HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc----ccccHHHHHHHHHHHhcCCCChhHHHH
Confidence 3445666665533 347777777777776 567777777777776 6677777777777744 356667777
Q ss_pred HHHHHHc
Q 023425 200 YGSLLLR 206 (282)
Q Consensus 200 Lg~~y~~ 206 (282)
|...+..
T Consensus 226 L~~~f~~ 232 (497)
T 1ya0_A 226 LQKALSK 232 (497)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.28 E-value=1.8 Score=32.97 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=10.8
Q ss_pred ccCHHHHHHHHHHHHHc
Q 023425 175 KKDIASALWCFHRASEK 191 (282)
Q Consensus 175 ~~d~~~A~~~~~~A~~~ 191 (282)
.+|.++|...|+.+...
T Consensus 73 i~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 73 IQEPDDARDYFQMARAN 89 (161)
T ss_dssp HHCGGGCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 36667777777766543
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.32 E-value=1.6 Score=32.83 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHH
Q 023425 121 DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ---LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAG 195 (282)
Q Consensus 121 ~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~---g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~ 195 (282)
.+++.|+++-.+..... +.|..+++..++..... ..-++.|.|+.-+.. .+|+.+|+.+.+..++. ++..
T Consensus 38 s~~t~F~YAw~Lv~S~~-~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk----l~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTD-VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp CHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHTCCCCHH
T ss_pred cHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcCCCcHH
Confidence 45666666666655322 34456666666666654 245677777777777 77777777777777654 3444
Q ss_pred HH
Q 023425 196 AA 197 (282)
Q Consensus 196 a~ 197 (282)
|.
T Consensus 113 A~ 114 (144)
T 1y8m_A 113 VG 114 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 233
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.62 E-value=15 Score=34.61 Aligned_cols=120 Identities=10% Similarity=-0.053 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-CCCHH-HHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN-MGDPD-AQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-~g~~~-A~~~Lg~~y~~g~~~~~d~ 142 (282)
..|.+.|...|.+.....+-++.....+-..............++..|+.++.. ..+.. .....+.. +. ..|+
T Consensus 227 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~A-lr----~~d~ 301 (618)
T 1qsa_A 227 RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA-LG----TGDR 301 (618)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH-HH----HTCH
T ss_pred hcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHH-HH----CCCH
Confidence 356788888887775433334444433332222121111214677788877653 23333 33333333 33 4577
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
+.|..||.+.... ..+.+.|.+|..+.. .++.++|..+|++++...+
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~----~g~~~~a~~~~~~~a~~~~ 350 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLE----RGREAEAKEILHQLMQQRG 350 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCC
Confidence 9999999887553 568889999999888 8999999999999987644
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=85.33 E-value=8.2 Score=36.64 Aligned_cols=85 Identities=12% Similarity=-0.020 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHH
Q 023425 119 MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAI 198 (282)
Q Consensus 119 ~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~ 198 (282)
..++..+..||.++...+. ++.|..+|.++ ++......|-.. .++.++....-+.+...|.....+
T Consensus 678 ~~~~~~W~~la~~al~~~~----~~~A~~~y~~~---~d~~~l~~l~~~-------~~~~~~~~~~~~~a~~~~~~~~A~ 743 (814)
T 3mkq_A 678 ESAEMKWRALGDASLQRFN----FKLAIEAFTNA---HDLESLFLLHSS-------FNNKEGLVTLAKDAETTGKFNLAF 743 (814)
T ss_dssp CCCHHHHHHHHHHHHHTTC----HHHHHHHHHHH---TCHHHHHHHHHH-------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hCcHhHHHHHHHHHHHcCC----HHHHHHHHHHc---cChhhhHHHHHH-------cCCHHHHHHHHHHHHHcCchHHHH
Confidence 4556666666666666333 36666666654 333333222222 344444444444454455544433
Q ss_pred HHHHHHHcCCCCcccHHHHHHHHHHH
Q 023425 199 AYGSLLLRGVQVPECLTKLNAKRVSA 224 (282)
Q Consensus 199 ~Lg~~y~~g~g~~~~~~~A~~~~~~a 224 (282)
.+ |.. .+++++|++.|...
T Consensus 744 ~~---~~~----~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 744 NA---YWI----AGDIQGAKDLLIKS 762 (814)
T ss_dssp HH---HHH----HTCHHHHHHHHHHT
T ss_pred HH---HHH----cCCHHHHHHHHHHc
Confidence 33 222 35555555555433
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.03 E-value=9.8 Score=28.16 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL---HPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
+++.|+++-.+.... .+.|..+++..++...+.+ .-+++|.|+.-+.. .+|+++|+.+.+..++
T Consensus 40 ~qt~F~yAw~Lv~S~-~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk----lgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 40 IQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH----hhhHHHHHHHHHHHHh
Confidence 344444444443321 1223344444444444331 23444555555554 5555555555554443
No 236
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=84.63 E-value=11 Score=35.80 Aligned_cols=96 Identities=15% Similarity=0.082 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+++++|.+..+ ...++..|-.||.++... .+.+.|+++|.++ ++.+....|-.. ..+.+..
T Consensus 666 ~~~~~A~~~~~-----~~~~~~~W~~la~~al~~----~~~~~A~~~y~~~---~d~~~l~~l~~~-------~~~~~~~ 726 (814)
T 3mkq_A 666 GQLTLARDLLT-----DESAEMKWRALGDASLQR----FNFKLAIEAFTNA---HDLESLFLLHSS-------FNNKEGL 726 (814)
T ss_dssp TCHHHHHHHHT-----TCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHH---TCHHHHHHHHHH-------TTCHHHH
T ss_pred CCHHHHHHHHH-----hhCcHhHHHHHHHHHHHc----CCHHHHHHHHHHc---cChhhhHHHHHH-------cCCHHHH
Confidence 44666655533 336889999999999976 6789999999976 444444333332 2233444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 023425 146 FYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 146 ~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
...-+.+...|.....+.+ |+. .+++++|++.|.+
T Consensus 727 ~~~~~~a~~~~~~~~A~~~---~~~----~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 727 VTLAKDAETTGKFNLAFNA---YWI----AGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHH---HHH----HTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHH---HHH----cCCHHHHHHHHHH
Confidence 4444444445555444433 333 5677777777754
No 237
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=84.59 E-value=12 Score=29.02 Aligned_cols=28 Identities=11% Similarity=-0.084 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 023425 156 LHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 156 g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
++..-+..||..-+. .++++-|..+|++
T Consensus 32 ~~~~~Wk~Lg~~AL~----~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 32 NDSITWERLIQEALA----QGNASLAEMIYQT 59 (177)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----cCChHHHHHHHHH
Confidence 344444445554444 4555555555544
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=83.70 E-value=2.7 Score=31.65 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023425 157 HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGS 202 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~ 202 (282)
+|+-.+.||..|.. .++..+|-+.+.+|++.|-++||.++-.
T Consensus 124 ~~~~l~kia~Ay~K----lg~~r~a~eLl~~AC~kG~kEAC~~in~ 165 (172)
T 1wy6_A 124 SASILVAIANALRR----VGDERDATTLLIEACKKGEKEACNAVNT 165 (172)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred ChHHHHHHHHHHHH----hcchhhHHHHHHHHHHhhhHHHHHHHHh
Confidence 38888899999988 8999999999999999999999877654
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=82.62 E-value=6.9 Score=29.79 Aligned_cols=106 Identities=14% Similarity=0.022 Sum_probs=66.1
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCcC--HHHHHHHHHHHHhCC------CH----HHHHHHHHHHhcCCCCcCCHHHHHHH
Q 023425 81 ADNSNTHARYWLSKLHLKYHVPGAC--KAMGAALLVDAANMG------DP----DAQYELGCRLRVENDYVQSDQQAFYY 148 (282)
Q Consensus 81 ~~~g~~~a~~~Lg~~~~~~~~~~~~--~~~A~~~~~~Aa~~g------~~----~A~~~Lg~~y~~g~~~~~d~~~A~~~ 148 (282)
+.|.+++.|+.+-.+.+..+.+..| .+.-...|++|+..= .. .-+...+.. .. .+|.++|.+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e----i~D~d~aR~v 82 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA----IQEPDDARDY 82 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH----HHCGGGCHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH----hcCHHHHHHH
Confidence 6789999999998888855222111 256668899997522 21 223333332 22 3677999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 149 IEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 149 ~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
|+.+...+..-|-+.+...-++- ..++..+|.+.+.+|+..+.
T Consensus 83 y~~a~~~hKkFAKiwi~~AqFEi--Rqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 83 FQMARANCKKFAFVHISFAQFEL--SQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHHHHCTTBHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH--HcccHHHHHHHHHHHhccCC
Confidence 99997652222444444333321 17899999999999998764
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=76.80 E-value=26 Score=33.84 Aligned_cols=109 Identities=11% Similarity=0.022 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----------CCHHHH----------HH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM----------GDPDAQ----------YE 127 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----------g~~~A~----------~~ 127 (282)
++.|+..+++..+.+|... ..+....+.... ......-+|+....++++. .+..+. ..
T Consensus 265 ~~~a~~~le~L~~~~p~~~-~~~~~~~i~~~~-~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~ 342 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHD-IYYKTAMITILD-HIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI 342 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchh-HHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence 6889999999887655432 233223222211 1123456777877777631 222221 11
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
-+..+.. .++++.|+.+-++|... ..-.+++.|+.+|.. .+|++.|+--+-
T Consensus 343 Qa~FLl~----K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~----l~d~e~ALLtLN 395 (754)
T 4gns_B 343 QTNFLLN----RGDYELALGVSNTSTELALDSFESWYNLARCHIK----KEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred HHHHHhc----cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH----hccHHHHHHHHh
Confidence 1334444 45679999999999987 789999999999999 999999986544
No 241
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.31 E-value=45 Score=28.37 Aligned_cols=106 Identities=16% Similarity=0.098 Sum_probs=53.5
Q ss_pred ccchHHHHHHHHHHhhhhhHHH-HHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcC---
Q 023425 30 HSRNKKAMELIAKGWSALKEVD-RVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGAC--- 105 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~--- 105 (282)
.+++++|++++..|...+-... ....-.. .---++.|+++ -.+-+.+..-.|..++..-......
T Consensus 46 ~~~~~eAidlL~~ga~~ll~~~Q~~sa~DL---------a~llvev~~~~--~~~~~~~~~~rl~~l~~~~p~~~~~r~~ 114 (312)
T 2wpv_A 46 SKSYEHAIELISQGALSFLKAKQGGSGTDL---------IFYLLEVYDLA--EVKVDDISVARLVRLIAELDPSEPNLKD 114 (312)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHH---------HHHHHHHHHHT--TCCCSHHHHHHHHHHHTTCCTTCTTHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHCCCcchHHHH---------HHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCCCchHHH
Confidence 3467777777777665433211 0000000 01122334444 2334455555566665432111111
Q ss_pred -HHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHH
Q 023425 106 -KAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIE 150 (282)
Q Consensus 106 -~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~ 150 (282)
..+|++|-.+.- ..|+|+-+..+|..|.. ..++.+|..+|-
T Consensus 115 fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~H~i 158 (312)
T 2wpv_A 115 VITGMNNWSIKFSEYKFGDPYLHNTIGSKLLE----GDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHH
Confidence 255666655542 34788888888888777 344477777775
No 242
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=71.39 E-value=4.6 Score=27.43 Aligned_cols=37 Identities=27% Similarity=0.223 Sum_probs=22.7
Q ss_pred ChhhhhhhhhhHHhhhhhhhcchhhhhhcccchHHHHHHHHHHhhh
Q 023425 1 MQRQISKASTLKSAALGLLQSNQHQKRWLHSRNKKAMELIAKGWSA 46 (282)
Q Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~~ 46 (282)
|+.|-+.|-.+++.++.. ...+++++|+.+|..|+..
T Consensus 9 ~~~~~~~A~~lv~~Ave~---------D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 9 MDPQSTAAATVLKRAVEL---------DSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp --CHHHHHHHHHHHHHHH---------HHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH---------HHcCCHHHHHHHHHHHHHH
Confidence 566667777777666553 3455677777777666553
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=67.99 E-value=36 Score=25.57 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023425 121 DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLG 165 (282)
Q Consensus 121 ~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg 165 (282)
+|+-...+|..|..-+.. .+|-+.+.+|++.|-++|+.++-
T Consensus 124 ~~~~l~kia~Ay~Klg~~----r~a~eLl~~AC~kG~kEAC~~in 164 (172)
T 1wy6_A 124 SASILVAIANALRRVGDE----RDATTLLIEACKKGEKEACNAVN 164 (172)
T ss_dssp CHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhcch----hhHHHHHHHHHHhhhHHHHHHHH
Confidence 366666666666663333 66666666666666666666553
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=62.58 E-value=1e+02 Score=28.86 Aligned_cols=118 Identities=10% Similarity=-0.108 Sum_probs=69.7
Q ss_pred cccchHHHHHHHHHHhhh--hhHHHHH-HHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHhcCCCCCc
Q 023425 29 LHSRNKKAMELIAKGWSA--LKEVDRV-IDYCELNDRRLIPLLKTAKENFELALEADNSNTH-ARYWLSKLHLKYHVPGA 104 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~-a~~~Lg~~~~~~~~~~~ 104 (282)
...+.+.|...+.+.... +...... ............+...++..|+.+.... +.+.. ..+..+..+.. .
T Consensus 226 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~r~Alr~-----~ 299 (618)
T 1qsa_A 226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-SQSTSLIERRVRMALGT-----G 299 (618)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHH-----T
T ss_pred HhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc-CCChHHHHHHHHHHHHC-----C
Confidence 344667777776554322 1111111 1111222222223256777888876643 34433 33444444433 4
Q ss_pred CHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC
Q 023425 105 CKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL 156 (282)
Q Consensus 105 ~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g 156 (282)
|++.|..||.+... ...+.+.|.+|..+...+.. ++|..+|++++...
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~----~~a~~~~~~~a~~~ 349 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGRE----AEAKEILHQLMQQR 349 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCH----HHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCH----HHHHHHHHHHhcCC
Confidence 88999999988654 24688899999998884444 89999999998753
No 245
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.65 E-value=21 Score=31.76 Aligned_cols=59 Identities=12% Similarity=-0.003 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 123 DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----L-HPGALYLLGTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 123 ~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
.++..||..|.+-+.. +.|++.|.+.-+. + -.+.+..+-.++.. .+|+..+..++.+|-
T Consensus 132 ~~~~~la~~~~~~Gd~----~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~----~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDK----DNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF----YNDQLYVKEKLEAVN 195 (429)
T ss_dssp SCCHHHHHHHHHHCCC----TTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH----HTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH----HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHH
Confidence 4566666666664444 6666666665442 2 24444555555555 566666666666663
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=60.94 E-value=80 Score=27.12 Aligned_cols=106 Identities=12% Similarity=-0.032 Sum_probs=55.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHH-HHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcC---
Q 023425 30 HSRNKKAMELIAKGWSALKEVD-RVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGAC--- 105 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~--- 105 (282)
.+++++|++++..|...+-... ....-.. .---++.|+++ --+-+.+..-.|..++..-......
T Consensus 48 ~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL---------~~llvevy~~~--~~~~~~~~~~rL~~L~~~~~~~~p~r~~ 116 (336)
T 3lpz_A 48 QGNWAAAVDILASVSQTLLRSGQGGSGGDL---------AVLLVDTFRQA--GQRVDGASRGKLLGCLRLFQPGEPVRKR 116 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHH---------HHHHHHHHHHH--TCCCCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHCCCcchHHHH---------HHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCCCCcHHHH
Confidence 5668888888877766443221 0000000 01112344444 2223344555555555432111000
Q ss_pred -HHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHH
Q 023425 106 -KAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIE 150 (282)
Q Consensus 106 -~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~ 150 (282)
..+|+.|=.+.- ..|+|+-+..+|.+|.+. .++.+|..+|-
T Consensus 117 fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e----~~~~~Ae~H~i 160 (336)
T 3lpz_A 117 FVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEE----GEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHT----TCHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHH
Confidence 256666666532 468888888888888874 44577777774
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=55.95 E-value=29 Score=33.48 Aligned_cols=48 Identities=13% Similarity=-0.054 Sum_probs=41.1
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVD 115 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~ 115 (282)
.+++++-|++.-++|+..-|..-..|+.|+.+|... .|++.|+-.+.-
T Consensus 349 ~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l----~d~e~ALLtLNS 396 (754)
T 4gns_B 349 NRGDYELALGVSNTSTELALDSFESWYNLARCHIKK----EEYEKALFAINS 396 (754)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHh----ccHHHHHHHHhc
Confidence 347799999999999999999999999999999976 677888755443
No 248
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=53.43 E-value=81 Score=24.87 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCHHH-HHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhccHH
Q 023425 179 ASALWCFHRASEKGHAGA-AIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNL 257 (282)
Q Consensus 179 ~~A~~~~~~A~~~g~~~a-~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g~~~ 257 (282)
-.-+..|.|++.-.+++| .|.|+.|...| +|.. ...++-+..+.-++|...+.-...|...++-+-..|.|+
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~G----EDp~---~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 80 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAG----GDPL---YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYE 80 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CCHH---HHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCHH---HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcH
Confidence 345667788888777775 77788887664 2332 234444455666667666666777777777777788888
Q ss_pred HHHHHHHHHH
Q 023425 258 GLRWLQRIEE 267 (282)
Q Consensus 258 a~~~l~~l~~ 267 (282)
+...|+...-
T Consensus 81 ~~i~Laqavi 90 (201)
T 3bge_A 81 GERAIAQAII 90 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777665543
No 249
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=53.42 E-value=34 Score=29.89 Aligned_cols=65 Identities=14% Similarity=-0.099 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-------CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN-------MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-------~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~ 154 (282)
.+|.|+-+||.+-..... .+...++.+|.+|+. ..+.--+..+|..+++ ..++.+|+..+-.|++
T Consensus 253 rYPmALgnLgDLEe~~pt--~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR----~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPT--PGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYR----KKKYYEAIASWVDAGY 324 (472)
T ss_dssp TCHHHHHHHHHHHHHSCC--TTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCC--CCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhh----cchHHHHHHHHHHHHH
Confidence 589999999999774422 223447788988874 3467778888888887 5555999999998876
No 250
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.39 E-value=13 Score=26.76 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=23.7
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALE 80 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 80 (282)
+...+++|.+++.+|++.... ++.+.|+.+|++.++
T Consensus 15 ik~~h~~AF~~Is~AL~~DE~----------------g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 15 IREAYKKAFLFVNKGLNTDEL----------------GQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhc----------------CCHHHHHHHHHHHHH
Confidence 456688899998888774332 235666666666653
No 251
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=53.11 E-value=53 Score=25.99 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHcC
Q 023425 178 IASALWCFHRASEKGHAGA-AIAYGSLLLRG 207 (282)
Q Consensus 178 ~~~A~~~~~~A~~~g~~~a-~~~Lg~~y~~g 207 (282)
+-.-+..|.|++.-.+++| .|.|+.|+..|
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG 44 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 3344555666666655553 55566666553
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=52.89 E-value=1.1e+02 Score=26.02 Aligned_cols=104 Identities=13% Similarity=-0.122 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcC---
Q 023425 66 PLLKTAKENFELALE--ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQ--- 140 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~--~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~--- 140 (282)
+++++|++.+...+. ++.+-..+-..|+.++. +.|+++-..=+.+..-.|..++..-....+
T Consensus 47 ~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llv-------------ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~ 113 (312)
T 2wpv_A 47 KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLL-------------EVYDLAEVKVDDISVARLVRLIAELDPSEPNLK 113 (312)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHH
T ss_pred cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHH
Confidence 347888887666554 23345555555555543 334443322345555566666544221111
Q ss_pred -CHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 141 -SDQQAFYYIEKAVD--QLHPGALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 141 -d~~~A~~~~~kAa~--~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
=.++|+.|-.+.-. .|+|+-+..+|..|.. .+++.+|..+|-
T Consensus 114 ~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~H~i 158 (312)
T 2wpv_A 114 DVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLE----GDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHH
Confidence 14678888777643 4999999999999999 789999999886
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=52.65 E-value=1.2e+02 Score=26.60 Aligned_cols=90 Identities=10% Similarity=-0.046 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-----
Q 023425 125 QYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----- 191 (282)
Q Consensus 125 ~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----- 191 (282)
-..||.+|++ ..++.+|+..+.+..+. ++ .+.+..-..+|.. .+|+.++...+.+|...
T Consensus 102 ~~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~----~~n~~k~k~~l~~a~~~~~ai~ 173 (394)
T 3txn_A 102 EARLIALYFD----TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA----LSNLPKARAALTSARTTANAIY 173 (394)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHH----hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhhccCC
Confidence 3477888888 55558888888777652 22 3334444566666 78888888888887432
Q ss_pred CCHHH----HHHHHHHHH-cCCCCcccHHHHHHHHHHHHH
Q 023425 192 GHAGA----AIAYGSLLL-RGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 192 g~~~a----~~~Lg~~y~-~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+|.. ..--|.+++ . .+++..|..+|-.+..
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~----~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAAD----ERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHT----TSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHh----ccCHHHHHHHHHHHHh
Confidence 23332 222366666 5 7888888877777643
No 254
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=52.04 E-value=89 Score=24.90 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhccH
Q 023425 178 IASALWCFHRASEKGHAGA-AIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 178 ~~~A~~~~~~A~~~g~~~a-~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g~~ 256 (282)
+-.-+..|.|++.-.+++| .|.|+.|...| +|.. ...++-+..+.-++|...+.-...|...++-+-..|.|
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~G----EDp~---~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAG----EDPN---FIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CCHH---HHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCHH---HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4455667777777777664 67777776654 2321 23344444555566666666666667677777777777
Q ss_pred HHHHHHHHHH
Q 023425 257 LGLRWLQRIE 266 (282)
Q Consensus 257 ~a~~~l~~l~ 266 (282)
++...|+..-
T Consensus 108 E~~i~Laqav 117 (213)
T 3ctd_A 108 EGLFFLSQAS 117 (213)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666665543
No 255
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=48.17 E-value=16 Score=24.45 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=7.7
Q ss_pred cccchHHHHHHHHHHhh
Q 023425 29 LHSRNKKAMELIAKGWS 45 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~ 45 (282)
..+++++|+.+|..|+.
T Consensus 31 ~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34444555444444433
No 256
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=47.96 E-value=93 Score=23.98 Aligned_cols=108 Identities=11% Similarity=-0.009 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHH
Q 023425 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLL 164 (282)
Q Consensus 85 ~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~L 164 (282)
||+.-|.|+.-+ .+.+.|.+..+ +.++..-+..||..-+..+.+ +-|..+|+++- +.....
T Consensus 7 D~~~rF~LAL~l-------g~l~~A~e~a~---~l~~~~~Wk~Lg~~AL~~gn~----~lAe~cy~~~~---D~~~L~-- 67 (177)
T 3mkq_B 7 DPHIRFDLALEY-------GNLDAALDEAK---KLNDSITWERLIQEALAQGNA----SLAEMIYQTQH---SFDKLS-- 67 (177)
T ss_dssp CHHHHHHHHHHT-------TCHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCH----HHHHHHHHHTT---CHHHHH--
T ss_pred ChHHHHHHHHhc-------CCHHHHHHHHH---HhCCHHHHHHHHHHHHHcCCh----HHHHHHHHHhC---CHHHHH--
Confidence 455555555433 34566655533 236677777788777774444 77777777653 333322
Q ss_pred HHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 023425 165 GTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVS 223 (282)
Q Consensus 165 g~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 223 (282)
.+|.- .+|.++=.+.-+.|...|+....+..... .+++++++..|.+
T Consensus 68 -~Ly~~----tg~~e~L~kla~iA~~~g~~n~af~~~l~-------lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 68 -FLYLV----TGDVNKLSKMQNIAQTREDFGSMLLNTFY-------NNSTKERSSIFAE 114 (177)
T ss_dssp -HHHHH----HTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------HTCHHHHHHHHHH
T ss_pred -HHHHH----hCCHHHHHHHHHHHHHCccHHHHHHHHHH-------cCCHHHHHHHHHH
Confidence 22322 45555555555666666665555444322 3556655555543
No 257
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=47.26 E-value=45 Score=22.12 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 023425 68 LKTAKENFELAL 79 (282)
Q Consensus 68 ~~~A~~~~~~a~ 79 (282)
+++|+.+|+.++
T Consensus 27 y~eAl~lY~~ai 38 (83)
T 2v6y_A 27 VEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 258
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=46.72 E-value=47 Score=22.12 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH
Q 023425 33 NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALE 80 (282)
Q Consensus 33 ~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 80 (282)
.++|+++..+++..... +++++|+.+|+.|++
T Consensus 16 ~~~Ai~lv~~Ave~D~~----------------g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 16 EEMARKYAINAVKADKE----------------GNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh----------------ccHHHHHHHHHHHHH
Confidence 46778887777653322 347777777777764
No 259
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=46.66 E-value=47 Score=29.59 Aligned_cols=65 Identities=9% Similarity=-0.146 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-------CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN-------MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-------~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~ 154 (282)
.+|.|+-+||.+-..... .....++.+|.+|+. ..+.--+..+|..+++ ..++.+|+..+-.|++
T Consensus 275 rYPmALgnLgDLEe~~pt--~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR----~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 275 RYPMALGNLADLEELEPT--PGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCR----NRNVREALQAWADTAT 346 (550)
T ss_dssp TCHHHHHHHHHHHHHSCC--TTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHhhcCCC--CCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhh----cchHHHHHHHHHHHHH
Confidence 589999999998774422 222347788888874 3467778888888877 5555999999988876
No 260
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=43.99 E-value=9 Score=26.15 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=12.1
Q ss_pred ccchHHHHHHHHHHhhh
Q 023425 30 HSRNKKAMELIAKGWSA 46 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~ 46 (282)
...++.|.+++.+|+..
T Consensus 10 k~~h~~AF~~Is~aL~~ 26 (89)
T 3eab_A 10 RVFHKQAFEYISIALRI 26 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44577888888887763
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=42.96 E-value=1.7e+02 Score=25.59 Aligned_cols=84 Identities=15% Similarity=-0.030 Sum_probs=62.5
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH----
Q 023425 161 LYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA---- 228 (282)
Q Consensus 161 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a---- 228 (282)
-.+||.+|+. .+++.+|++.+.+..+. ++ .+.+.....+|.. .+|..++..+|.+|-..+
T Consensus 102 ~~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~----~~n~~k~k~~l~~a~~~~~ai~ 173 (394)
T 3txn_A 102 EARLIALYFD----TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA----LSNLPKARAALTSARTTANAIY 173 (394)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHH----hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhhccCC
Confidence 3589999999 99999999999887552 22 3445556677776 789999999999886521
Q ss_pred -------ch--hch--hc-cCCCHHHHHHHHHHHHH
Q 023425 229 -------RA--NLE--SN-LMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 229 -------~~--~lg--~~-~~~~~~~A~~~~~~Aa~ 252 (282)
.. ..| .+ ..+|+..|..+|-.|.+
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 11 123 45 68899999999999863
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.46 E-value=68 Score=28.33 Aligned_cols=113 Identities=12% Similarity=-0.037 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----C-CHHHHHHHHHHHhcCCCCcC
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM----G-DPDAQYELGCRLRVENDYVQ 140 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g-~~~A~~~Lg~~y~~g~~~~~ 140 (282)
..+++.++.+++-...+..-..++..||..|..- +|++.|.+.|.+.-+. + -.+.+..+-.++.. ..
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~----Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~----~~ 182 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQI----GDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF----YN 182 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHH----CCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH----HT
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----hc
Confidence 4455555554442112222445788999999966 4668999999988642 3 35667777777776 67
Q ss_pred CHHHHHHHHHHHHHc----CCHHHHHH----HHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 141 SDQQAFYYIEKAVDQ----LHPGALYL----LGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 141 d~~~A~~~~~kAa~~----g~~~A~~~----Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
|+..+..++.++-.. +++.-... -|.++.. .+++..|..+|..+..
T Consensus 183 d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~----~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 183 DQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLA----VRNFKEAAKLLVDSLA 236 (429)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGG----TSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH----hChHHHHHHHHHHHhc
Confidence 889999999998653 55544433 3555555 7889998888876654
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=40.33 E-value=1.8e+02 Score=24.97 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH----hCCCHHHHHHHHHHHhc----
Q 023425 67 LLKTAKENFELALEADNSN----THARYWLSKLHLKYHVPGACKAMGAALLVDAA----NMGDPDAQYELGCRLRV---- 134 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~----~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa----~~g~~~A~~~Lg~~y~~---- 134 (282)
.+++-+.-++..++. |+ -+|+-.+=.++.+- ...+++++|+..+...+ +.|...+-..|+.++.+
T Consensus 11 ~~~~~i~rl~~~I~~--G~y~~~YEAHQ~~RTi~~Ry-~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~ 87 (336)
T 3lpz_A 11 KIERIIARLQRRIAE--GQPEEQYEAAQETRLVAARY-SKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQ 87 (336)
T ss_dssp HHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCccccHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHH
Confidence 355666666666543 33 34554443333211 11256677777666654 34555555555543321
Q ss_pred CC-C---------------CcC-C------HHHHHHHHHHHH--HcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 135 EN-D---------------YVQ-S------DQQAFYYIEKAV--DQLHPGALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 135 g~-~---------------~~~-d------~~~A~~~~~kAa--~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
.+ . .+. + .++|+.|=.+.- ..|+|+-+..+|.+|.. .+++.+|..+|-
T Consensus 88 ~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~----e~~~~~Ae~H~i 160 (336)
T 3lpz_A 88 AGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVE----EGEFEAAEKHLV 160 (336)
T ss_dssp HTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHH----TTCHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHH
Confidence 10 0 111 1 346777776643 35899999999999998 788999988885
No 264
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=38.97 E-value=84 Score=23.05 Aligned_cols=44 Identities=11% Similarity=-0.073 Sum_probs=27.6
Q ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Q 023425 174 VKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK 227 (282)
Q Consensus 174 ~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 227 (282)
..+|.+++..|+++|.. ....+..... .++++.|.....+|++.
T Consensus 2 ~~~~~ee~~~wl~~A~~------dl~~A~~~~~----~g~y~~a~F~aqQA~Ek 45 (141)
T 3o10_A 2 SVGNPVEARRWLRQARA------NFSAARNDLH----KNANEWVCFKCYLSTKL 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHH------HHHHHGGGTT----TTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHh------hhhHHhhHHh----hCccceEeeehhHHHHH
Confidence 45688888888888643 2233333333 45677777777777764
No 265
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=38.92 E-value=35 Score=22.65 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=5.2
Q ss_pred HHHHHHHHHHh
Q 023425 34 KKAMELIAKGW 44 (282)
Q Consensus 34 ~~A~e~~~~~~ 44 (282)
++|+++..+++
T Consensus 11 ~~A~~l~~~Av 21 (85)
T 2v6x_A 11 TKGIELVQKAI 21 (85)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555544443
No 266
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=36.96 E-value=78 Score=27.69 Aligned_cols=65 Identities=22% Similarity=0.141 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 120 GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 120 g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
..|-|+.+||.+-.-... .+...++..|.+|+.. .|..-+.-+|-+|.. .+++.+|++++-.|++
T Consensus 253 rYPmALgnLgDLEe~~pt--~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR----~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPT--PGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYR----KKKYYEAIASWVDAGY 324 (472)
T ss_dssp TCHHHHHHHHHHHHHSCC--TTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCC--CCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhh----cchHHHHHHHHHHHHH
Confidence 368899999987553211 1113478888888763 567777777777777 7999999999988865
No 267
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=36.46 E-value=87 Score=27.91 Aligned_cols=66 Identities=11% Similarity=-0.087 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-------CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH
Q 023425 83 NSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN-------MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 83 ~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-------~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~ 154 (282)
..+|.|.-+||.+-...... ..+.++.+|.+|+. ..+.--+..+|-.+..- .++.+|+..+-.|++
T Consensus 259 ~~YPmALgnLgDLEei~pt~--grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~----~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 259 ERYPMALGNLADLEELEPTP--GRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRN----RNVREALQAWADTAT 331 (489)
T ss_dssp TTCHHHHHHHHHHHHHSCCT--TSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHT----TCHHHHHHHHHHHHH
T ss_pred hhcchhhhcccCHhhcCCCC--CCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHh----hhHHHHHHHhhhhhh
Confidence 36899999999998754222 22456678988875 35667777778777763 445899999998876
No 268
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=35.72 E-value=84 Score=21.28 Aligned_cols=13 Identities=8% Similarity=0.248 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHhh
Q 023425 33 NKKAMELIAKGWS 45 (282)
Q Consensus 33 ~~~A~e~~~~~~~ 45 (282)
.++|++++.+++.
T Consensus 12 l~~Ai~lv~~Ave 24 (93)
T 1wfd_A 12 STAAVAVLKRAVE 24 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4577777776655
No 269
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=33.59 E-value=1.7e+02 Score=22.82 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=16.4
Q ss_pred CCCHHHHHH-HHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 119 MGDPDAQYE-LGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 119 ~g~~~A~~~-Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
+++.+-.++ +|.++...+.. ++|+.+|..+-..
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r----~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYR----EEGIGHYVRSFGK 143 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCH----HHhhhHhhhhcCC
Confidence 345444443 34444443333 6666666666554
No 270
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=27.99 E-value=1.6e+02 Score=20.83 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHhh
Q 023425 33 NKKAMELIAKGWS 45 (282)
Q Consensus 33 ~~~A~e~~~~~~~ 45 (282)
.++|++++.+++.
T Consensus 15 l~kAi~lv~~Ave 27 (117)
T 2cpt_A 15 LQKAIDLASKAAQ 27 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666543
No 271
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=27.76 E-value=1.2e+02 Score=27.01 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 120 GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 120 g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
..|-|+.+||.+-.-... ..-..++..|.+|+.. .|..-+.-+|-+|.. .+++.+|+..+-.|++
T Consensus 275 rYPmALgnLgDLEe~~pt--~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR----~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 275 RYPMALGNLADLEELEPT--PGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCR----NRNVREALQAWADTAT 346 (550)
T ss_dssp TCHHHHHHHHHHHHHSCC--TTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHhhcCCC--CCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhh----cchHHHHHHHHHHHHH
Confidence 368899999987553211 1113477788887663 567777777777766 7899999998887754
No 272
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.14 E-value=80 Score=19.18 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=17.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHH
Q 023425 113 LVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEK 151 (282)
Q Consensus 113 ~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~k 151 (282)
+..-++.|++.....++.---.+.++ +.|++|+.|
T Consensus 13 lq~L~eMGFd~erae~Alk~Tg~~Gl----e~AmewL~k 47 (54)
T 2cos_A 13 LQELVNAGCDQEMAGRALKQTGSRSI----EAALEYISK 47 (54)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTSCCH----HHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhCcccH----HHHHHHHHH
Confidence 44445555555555554433332233 666666655
No 273
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.36 E-value=2.7e+02 Score=22.12 Aligned_cols=49 Identities=12% Similarity=0.059 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH--HhcCCCCccCHHHHHHHHHHHHHc
Q 023425 142 DQQAFYYIEKAVDQLHPGALYLLGTV--YLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 142 ~~~A~~~~~kAa~~g~~~A~~~Lg~~--y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
...|...++.+-..|.|++...|+.+ |+---...... .|+..-.+.++.
T Consensus 91 l~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~APKSNs~-~A~~~A~~~v~~ 141 (213)
T 3ctd_A 91 IVVVQSCCDAFDRVGFPEGLFFLSQASLYLAISPKSNST-KSIFKAMEAIKA 141 (213)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSCCCCGG-GHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccHHH-HHHHHHHHHHHh
Confidence 35666666666666888888888754 44322222223 444444444443
No 274
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=23.19 E-value=2.2e+02 Score=25.36 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 120 GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD-------QLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 120 g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~-------~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
-.|-|+.+||.+-.-.... ..+.++..|.+|+. ..+...+.-+|-.+.. .+++.+|+.++-.|++
T Consensus 260 ~YPmALgnLgDLEei~pt~--grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R----~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 260 RYPMALGNLADLEELEPTP--GRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCR----NRNVREALQAWADTAT 331 (489)
T ss_dssp TCHHHHHHHHHHHHHSCCT--TSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred hcchhhhcccCHhhcCCCC--CCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHH----hhhHHHHHHHhhhhhh
Confidence 3677888888876432211 11345667777766 2566666666655555 5778888888877754
No 275
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=22.65 E-value=1.9e+02 Score=23.90 Aligned_cols=51 Identities=16% Similarity=0.017 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG 120 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g 120 (282)
+++++|+...+..+..+|.|+..-..|-.++.-. .+++.|.+-++.++++.
T Consensus 11 g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~----G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 11 GQLQQALELLIEAIKASPKDASLRSSFIELLCID----GDFERADEQLMQSIKLF 61 (273)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhC
Confidence 4589999999999999999999999888887733 58899999999988753
No 276
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.13 E-value=3.1e+02 Score=21.61 Aligned_cols=49 Identities=16% Similarity=-0.074 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH--HhcCCCCccCHHHHHHHHHHHHHc
Q 023425 143 QQAFYYIEKAVDQLHPGALYLLGTV--YLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 143 ~~A~~~~~kAa~~g~~~A~~~Lg~~--y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
..|...++.+-..|.|++...|+.+ |+---......-.|+..-.+.++.
T Consensus 70 ~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~aPKSNs~y~A~~~A~~~v~~ 120 (204)
T 2r9g_A 70 ARTVNAVLAAEKLGLPEARIPLADVVVDLCLSPKSNSAYMALDAALADIRE 120 (204)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHh
Confidence 4455555555555888888887744 433222233344555555555554
No 277
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=20.81 E-value=4.8e+02 Score=23.71 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHcCCH
Q 023425 178 IASALWCFHRASEKGHA 194 (282)
Q Consensus 178 ~~~A~~~~~~A~~~g~~ 194 (282)
+++|+.+++++-...++
T Consensus 455 Y~~Ai~~L~k~~~tdd~ 471 (526)
T 2wb7_A 455 YKAAINDLQKAAQQDDY 471 (526)
T ss_dssp HHHHHHHHHHHTTCCSH
T ss_pred HHHHHHHHHhhhccCCH
Confidence 56666666666555553
Done!