BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023426
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 162 RGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGK 221
+G+ ++ +++++ + L P+ PE++VF D HPL ++G + +
Sbjct: 33 QGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPL---YRAGHLILQDR 89
Query: 222 MST-QCSLLDPITGELTVEASSVP 244
S LLDP G ++A + P
Sbjct: 90 ASCLPAMLLDPPPGSHVIDACAAP 113
>pdb|1UEA|B Chain B, Mmp-3TIMP-1 Complex
pdb|1UEA|D Chain D, Mmp-3TIMP-1 Complex
Length = 184
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 120 GTTEVPFSMNLKQHGEENLERFYETFHG----ADINIQYLVTVDIMRGYLHKSLSATVEF 175
GT EV L Q E + + Y+ F ADI Y ++ + GY H+S + + EF
Sbjct: 25 GTPEVA-QTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHARSEEF 83
Query: 176 IVETDKADLL 185
++ D L
Sbjct: 84 LIAGKLQDGL 93
>pdb|3V96|A Chain A, Complex Of Matrix Metalloproteinase-10 Catalytic Domain
(Mmp-10cd) With Tissue Inhibitor Of Metalloproteinases-1
(Timp-1)
Length = 184
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 120 GTTEVPFSMNLKQHGEENLERFYETFHG----ADINIQYLVTVDIMRGYLHKSLSATVEF 175
GT EV L Q E + + Y+ F ADI Y ++ + GY H+S + + EF
Sbjct: 25 GTPEVA-QTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEF 83
Query: 176 IVETDKADLL 185
++ D L
Sbjct: 84 LIAGKLQDGL 93
>pdb|1OO9|B Chain B, Orientation In Solution Of Mmp-3 Catalytic Domain And N-
Timp-1 From Residual Dipolar Couplings
pdb|2J0T|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|E Chain E, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|F Chain F, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|1D2B|A Chain A, The Mmp-Inhibitory, N-Terminal Domain Of Human Tissue
Inhibitor Of Metalloproteinases-1 (N-Timp-1), Solution
Nmr, 29 Structures
Length = 126
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 120 GTTEVPFSMNLKQHGEENLERFYETFHG----ADINIQYLVTVDIMRGYLHKSLSATVEF 175
GT EV L Q E + + Y+ F ADI Y ++ + GY H+S + + EF
Sbjct: 25 GTPEVN-QTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEF 83
Query: 176 IVETDKADLL 185
++ D L
Sbjct: 84 LIAGKLQDGL 93
>pdb|3MA2|B Chain B, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
pdb|3MA2|C Chain C, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
Length = 125
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 120 GTTEVPFSMNLKQHGEENLERFYETFHG----ADINIQYLVTVDIMRGYLHKSLSATVEF 175
GT EV L Q E + + Y+ F ADI Y ++ + GY H+S + + EF
Sbjct: 25 GTPEVN-QTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEF 83
Query: 176 IVETDKADLL 185
++ D L
Sbjct: 84 LIAGKLQDGL 93
>pdb|4DX0|A Chain A, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY A
PYRAZOLE Derivative
Length = 243
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 151 NIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPE 210
N ++ ++ RG + LS + I+ ++ L+ + E VFY+ H L E
Sbjct: 84 NEDHVSSIKEYRGKIEAELSKICDGILNLLESHLIPVASTAESKVFYLKMKGDYHRYLAE 143
Query: 211 LKSGGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHL 252
K+G + K + + +LL + + A P H I + L
Sbjct: 144 FKTGAER---KEAAENTLLAYKSAQDIALAELAPTHPIRLGL 182
>pdb|3AXY|C Chain C, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|D Chain D, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|I Chain I, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|J Chain J, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 240
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%)
Query: 151 NIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPE 210
N +++ + RG + LS + I++ + L+ + E VFY+ H L E
Sbjct: 81 NEEHVTLIKEYRGKIEAELSKICDGILKLLDSHLVPSSTAAESKVFYLKMKGDYHRYLAE 140
Query: 211 LKSGGFKVTGKMST 224
K+G + ST
Sbjct: 141 FKTGAERKEAAEST 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,435,523
Number of Sequences: 62578
Number of extensions: 291969
Number of successful extensions: 718
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 712
Number of HSP's gapped (non-prelim): 16
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)