Query 023426
Match_columns 282
No_of_seqs 140 out of 367
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:56:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2717 Uncharacterized conser 100.0 2.4E-63 5.1E-68 441.0 21.5 241 37-281 4-245 (313)
2 PF03643 Vps26: Vacuolar prote 100.0 1.2E-53 2.7E-58 393.8 26.4 196 48-281 34-232 (275)
3 KOG3063 Membrane coat complex 100.0 2.6E-50 5.6E-55 357.9 15.3 195 48-281 41-239 (301)
4 KOG3780 Thioredoxin binding pr 99.9 2.4E-23 5.2E-28 201.2 26.8 215 34-263 3-237 (427)
5 PF00339 Arrestin_N: Arrestin 99.9 3.2E-24 7E-29 177.2 3.2 133 38-178 1-143 (149)
6 PF02752 Arrestin_C: Arrestin 98.0 0.00041 8.8E-09 55.7 14.8 122 37-177 6-131 (136)
7 PF07070 Spo0M: SpoOM protein; 97.9 0.00095 2.1E-08 60.3 16.3 117 36-177 13-131 (218)
8 KOG3865 Arrestin [Signal trans 96.4 0.18 3.9E-06 48.0 15.4 200 38-256 17-237 (402)
9 PF08737 Rgp1: Rgp1; InterPro 96.3 0.093 2E-06 51.7 14.0 41 219-259 307-349 (415)
10 PF13002 LDB19: Arrestin_N ter 96.1 0.0069 1.5E-07 53.6 4.4 44 112-162 42-88 (191)
11 PF02752 Arrestin_C: Arrestin 94.6 0.29 6.3E-06 38.9 8.9 50 214-263 3-54 (136)
12 PF07070 Spo0M: SpoOM protein; 93.8 0.5 1.1E-05 42.8 9.4 70 211-280 8-80 (218)
13 PF04425 Bul1_N: Bul1 N termin 92.6 0.5 1.1E-05 47.0 8.1 36 48-83 159-196 (438)
14 KOG3865 Arrestin [Signal trans 90.2 18 0.00039 34.9 15.2 45 38-84 197-241 (402)
15 PF03643 Vps26: Vacuolar prote 88.7 9.8 0.00021 35.6 12.5 104 38-161 166-271 (275)
16 PF01835 A2M_N: MG2 domain; I 86.0 13 0.00029 28.3 12.0 25 38-64 2-26 (99)
17 COG4326 Spo0M Sporulation cont 84.6 5.4 0.00012 36.2 7.9 113 37-178 34-152 (270)
18 KOG3780 Thioredoxin binding pr 82.1 50 0.0011 31.9 14.9 118 45-179 195-317 (427)
19 PF08737 Rgp1: Rgp1; InterPro 80.9 21 0.00046 35.3 11.4 96 47-160 313-411 (415)
20 PF00339 Arrestin_N: Arrestin 79.4 3 6.4E-05 33.7 4.1 40 223-262 9-49 (149)
21 TIGR03833 conserved hypothetic 74.7 5 0.00011 29.3 3.6 42 32-77 9-51 (62)
22 PF09962 DUF2196: Uncharacteri 71.8 6.1 0.00013 28.9 3.5 42 32-77 10-52 (62)
23 COG2373 Large extracellular al 61.3 92 0.002 36.3 11.9 21 44-64 400-420 (1621)
24 TIGR03517 GldM_gliding gliding 56.0 65 0.0014 33.0 8.8 46 45-90 242-292 (523)
25 KOG1366 Alpha-macroglobulin [P 32.1 8.5E+02 0.018 28.4 13.5 24 216-239 227-250 (1436)
26 KOG4785 Transcription factor C 31.6 1E+02 0.0022 26.5 4.9 57 25-83 47-112 (177)
27 PF04026 SpoVG: SpoVG; InterP 30.0 2.4E+02 0.0052 21.7 6.3 41 35-80 1-41 (84)
28 PF08985 DUF1888: Domain of un 26.6 1.3E+02 0.0028 25.0 4.5 29 37-65 12-44 (124)
29 KOG3265 Histone chaperone invo 23.9 98 0.0021 28.5 3.6 42 114-160 62-117 (250)
30 COG1918 FeoA Fe2+ transport sy 20.3 1.3E+02 0.0027 22.7 3.1 33 223-257 41-73 (75)
No 1
>KOG2717 consensus Uncharacterized conserved protein with similarity to embryogenesis protein H beta 58 and VPS26 [General function prediction only]
Probab=100.00 E-value=2.4e-63 Score=441.03 Aligned_cols=241 Identities=56% Similarity=0.905 Sum_probs=229.4
Q ss_pred EEEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCcc
Q 023426 37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGR 116 (282)
Q Consensus 37 ~~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G~ 116 (282)
+++|+++|.+++|+.||.+.|+|++..+..++|+||++.++|.+++|.+.+++|.||+||++++|+++++.++++..+|+
T Consensus 4 ~~~vkl~rsnriy~s~e~l~G~vvi~sa~s~~Hqgi~L~~eG~VNLQlsaksvGvfeaFYnsvKPIqiv~~tiE~~~pGK 83 (313)
T KOG2717|consen 4 TVNVKLSRSNRIYRSSEPLEGKVVIKSATSISHQGIRLSVEGSVNLQLSAKSVGVFEAFYNSVKPIQIVKKTIEVKSPGK 83 (313)
T ss_pred eEEEEEecccceeecCCccceeEEEEeccccccceEEEEEeeEEEEEEeccceeeeHHhhccccchhhhhceEEEecCCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEeeeEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEEEEEecCcccccCCCCCceeEE
Q 023426 117 IGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVF 196 (282)
Q Consensus 117 Lp~G~~~fPF~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V~~~~~dl~~~p~~~~pv~f 196 (282)
+|+|++||||+|+|.+++.| +++||+|||+|++|+|.++|+|.|.++.|++++.++|.|++.+.|+.+. +|++|.|
T Consensus 84 ~p~G~tEipFelpL~~kge~--~~lYETyHGvfiNiqY~LtcdikR~~L~K~ltkt~eFiv~s~pv~l~e~--~p~iV~F 159 (313)
T KOG2717|consen 84 IPPGTTEIPFELPLREKGEG--EKLYETYHGVFINIQYLLTCDIKRGYLHKPLTKTMEFIVESGPVDLPER--PPEIVIF 159 (313)
T ss_pred CCCCceeeeeeeeeccCCCc--cEeeeeecceEEEEEEEEEEecccchhcCchhhhheeeeccCCcccccC--CCcceEE
Confidence 99999999999999987654 8899999999999999999999999999999999999999999988765 4788999
Q ss_pred EecccccCCCccCCccccceEEEEEE-eccccCCCceEEEEEEEEecCCeeEEEEEEEEEEEEEeCCceeeeeeeEEEEE
Q 023426 197 YITQDTQRHPLLPELKSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQ 275 (282)
Q Consensus 197 ~I~~dtl~~~~i~~~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~~s~i~Ik~iElqLiR~Et~g~~~~~~~e~teiq~iq 275 (282)
.|+||+|+|...+.+..|+|.++|++ .++|++.+|++|++++++|+++|+|||+||+|+|||||++||.+||||||+||
T Consensus 160 ~itpdtlq~~~ker~~~p~FlvtG~Ld~t~c~~t~PltGeltVe~seaaI~Sie~qLvRVEtcgc~Egy~~dateIQsiQ 239 (313)
T KOG2717|consen 160 YITPDTLQHPLKERIKTPGFLVTGKLDATQCSLTDPLTGELTVEASEAAITSIEIQLVRVETCGCGEGYVTDATEIQSIQ 239 (313)
T ss_pred EEChHHhhccchhhccCCceEEEeeecceeeEecCCccceEEEEeeccceeEEEEEEEEEEEeecccceecccceeeeEE
Confidence 99999998843445788999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred eecccc
Q 023426 276 MEMSVA 281 (282)
Q Consensus 276 I~dg~~ 281 (282)
|+||+.
T Consensus 240 IADGdV 245 (313)
T KOG2717|consen 240 IADGDV 245 (313)
T ss_pred eccCcc
Confidence 999975
No 2
>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.
Probab=100.00 E-value=1.2e-53 Score=393.75 Aligned_cols=196 Identities=31% Similarity=0.521 Sum_probs=153.4
Q ss_pred CcCCCCcEeEEEEEEeCC--ceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCcccCCCceEee
Q 023426 48 IYRPSEPLQGKIVIKSSS--SIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVP 125 (282)
Q Consensus 48 vY~~GE~VsG~V~i~~~~--~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G~Lp~G~~~fP 125 (282)
+|++||+|+|+|+|++++ +++|+||+|++.|+ +|++|++.+|++|++.+++|+++|+|++|++ ||
T Consensus 34 iY~~gE~V~G~V~I~~~~gk~~~H~GI~l~lvG~------------ie~~~~~~k~~~f~~~~~eL~~~G~l~~~~t-~p 100 (275)
T PF03643_consen 34 IYSDGETVSGKVVITSKPGKSLEHQGIKLELVGQ------------IEAFYDSGKPIEFLSLSIELAPPGKLPEGKT-FP 100 (275)
T ss_dssp EEETC--EEEEEEEEESSTS-EEES-EEEEEEEE------------EEEGCCTT-EEEEEEEEEEEE-SEEE-S-EE-EE
T ss_pred eEcCCCEEEEEEEEEECCCCceEEeeEEEEEEEe------------EeEeccCCCceEeEEeeEEEcCCcccCCCcE-Ee
Confidence 899999999999999987 99999999999876 5778999999999999999999999999998 99
Q ss_pred eEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEEEEEecCcccccCCCCCceeEEEecccccCC
Q 023426 126 FSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRH 205 (282)
Q Consensus 126 F~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V~~~~~dl~~~p~~~~pv~f~I~~dtl~~ 205 (282)
|+|++.++ .||||||+|++|||+|||+|.|+| +|+++++||||+... ..|+...+++++++.+
T Consensus 101 FeF~~~~k-------~yETY~G~~v~i~Y~lrv~v~R~~--~~i~k~~ef~V~~~~----~~p~~~~~ik~evgie---- 163 (275)
T PF03643_consen 101 FEFPLVEK-------PYETYHGVNVNIRYFLRVTVKRSY--KDISKEQEFWVQNFS----ITPESNQPIKMEVGIE---- 163 (275)
T ss_dssp EEE-SB----------S--EE-SSEEEEEEEEEEE--SS--S-EEEEEEEEEE-EB------------EEEEECET----
T ss_pred eEeCCCCC-------CCccEeeeEEEEEEEEEEEEEccC--CCcceEEEEEEEecc----CCCCCCCCcccccCCC----
Confidence 99999865 799999999999999999999999 589999999997542 2455667788887642
Q ss_pred CccCCccccceEEEEEE-eccccCCCceEEEEEEEEecCCeeEEEEEEEEEEEEEeCCceeeeeeeEEEEEeecccc
Q 023426 206 PLLPELKSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQMEMSVA 281 (282)
Q Consensus 206 ~~i~~~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~~s~i~Ik~iElqLiR~Et~g~~~~~~~e~teiq~iqI~dg~~ 281 (282)
+.+||+|+| +++|||+|+|+|+|+|+++++|||||||||+|+||||+++++++|+|+||+||||||+.
T Consensus 164 --------~~lhief~~~k~~~~l~d~i~G~i~f~lv~~kIk~~elqLiR~Et~g~~~~~~~e~t~i~~~eImDG~p 232 (275)
T PF03643_consen 164 --------DCLHIEFEYDKSKYHLKDVITGKIYFLLVRIKIKSMELQLIRVETCGCGENYAKESTEIQKIEIMDGAP 232 (275)
T ss_dssp --------TTEEEEEEES-SEEETT-EEEEEEEEEEESS-EEEEEEEEEEEEEECECCCEEEEEEEEEEEEEESS--
T ss_pred --------ccEEEEEEEcccceECCCCEEEEEEEEEEeecceEEEEEEEEEEEEecCCcccccceEEEEEEeecCCc
Confidence 135899999 89999999999999999999999999999999999999999999999999999999974
No 3
>KOG3063 consensus Membrane coat complex Retromer, subunit VPS26 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-50 Score=357.95 Aligned_cols=195 Identities=16% Similarity=0.319 Sum_probs=178.1
Q ss_pred CcCCCCcEeEEEEEEeCC--ceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCcccCCCceEee
Q 023426 48 IYRPSEPLQGKIVIKSSS--SIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVP 125 (282)
Q Consensus 48 vY~~GE~VsG~V~i~~~~--~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G~Lp~G~~~fP 125 (282)
+|++||+|+|+|.|++++ +++|+||+|+++|++++ +|++++.++|.+.+.+||+||+|.+.+ .||
T Consensus 41 lf~dgEtv~G~V~l~lk~gkkleH~GikiefiGqIe~------------~~drgn~~eF~~lv~eLa~pGel~~~~-~fp 107 (301)
T KOG3063|consen 41 LFYDGETVSGKVNLRLKDGKKLEHQGIKIEFIGQIEM------------YYDRGNFHEFTSLVRELARPGELTQSQ-SFP 107 (301)
T ss_pred eEecCCeeeeEEEEEEcCCcccccCceEEEEEEEEEE------------EecCCcHHHHHHHHHhhcCCcceeecc-cCC
Confidence 899999999999999885 89999999999999766 566666688999999999999999887 499
Q ss_pred eEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEEEEEecCcccccCCCCCceeEEEecc-cccC
Q 023426 126 FSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQ-DTQR 204 (282)
Q Consensus 126 F~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V~~~~~dl~~~p~~~~pv~f~I~~-dtl~ 204 (282)
|+|...+ ++||||.|+|+++||++||++.|.+ +|++++++|||+.... .|+.+++++|+++. |||
T Consensus 108 FeF~~ve-------kpyEsY~G~NV~lrY~lkvTv~Rr~--~di~ke~d~~V~~~~~----~P~~nn~IkmeVGIedCL- 173 (301)
T KOG3063|consen 108 FEFPHVE-------KPYESYIGKNVRLRYFLKVTVSRRL--TDIVKEKDLVVHNLST----YPEINNSIKMEVGIEDCL- 173 (301)
T ss_pred ccccccc-------cchhhhcCcceEEEEEEEEEEEech--hhhhhhhheeeEeccc----CCCCCCceeEeechhhce-
Confidence 9999886 4999999999999999999999998 4999999999987643 67788899999984 576
Q ss_pred CCccCCccccceEEEEEE-eccccCCCceEEEEEEEEecCCeeEEEEEEEEEEEEEeCCceeeeeeeEEEEEeecccc
Q 023426 205 HPLLPELKSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQMEMSVA 281 (282)
Q Consensus 205 ~~~i~~~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~~s~i~Ik~iElqLiR~Et~g~~~~~~~e~teiq~iqI~dg~~ 281 (282)
||+++| |++|||+|+|.|+|||+++|++|||||++|+|+||+|++++++.|+++|.++|||||+-
T Consensus 174 ------------HIEFEYnKskYhLkdvIvGkIYFlLvRikIk~Mel~iikrEstG~gpn~~~e~eTiakyeIMDGap 239 (301)
T KOG3063|consen 174 ------------HIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMELSIIKRESTGTGPNTYVETETIAKYEIMDGAP 239 (301)
T ss_pred ------------EEEEEecccccchhheEEeeEEEEEEEEEeeeeEEEEEEeecccCCCcceeccceeeeEEeccCCC
Confidence 688888 99999999999999999999999999999999999999999999999999999999974
No 4
>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only]
Probab=99.92 E-value=2.4e-23 Score=201.19 Aligned_cols=215 Identities=24% Similarity=0.303 Sum_probs=164.7
Q ss_pred CeeEEEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecC-cc--------e---eEEEeecceec
Q 023426 34 DMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGG-SA--------G---VVESLYGVIKP 101 (282)
Q Consensus 34 ~m~~~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~-~~--------g---~~e~~~~~~~~ 101 (282)
.|+.++|.||++..+|.+||.|+|+|++++.+++++++|+|++.|.+++.|... +. + .....|. ..
T Consensus 3 ~~~~~~i~~d~~~~iy~~G~~vsG~v~l~~~~~~~~~~i~l~~~G~~~t~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 80 (427)
T KOG3780|consen 3 TMSSFEIVLDNPEAIYFPGEPVSGSVVLSTKEPIKVRAIKLQLKGRARTSWSESERGTKLNSKSEGSIKSSTVNYT--AK 80 (427)
T ss_pred CcceEEEEeCCCccccCCCCeEEEEEEEEeCCccceeEEEEEEEEeEEEeecccccccccccccccccccceEEee--ce
Confidence 456799999999999999999999999999999999999999999999999742 11 0 1111111 12
Q ss_pred EEEeeee--EEeeCCc--c--cCCCceEeeeEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEE
Q 023426 102 IKILKKS--QEIRTSG--R--IGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEF 175 (282)
Q Consensus 102 ~~~~~~~--~~la~~G--~--Lp~G~~~fPF~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF 175 (282)
.++++.. .|-+.+| . |++|.|+|||+|+||.+|| +||+|.+|+|||+|+|+++|||.. +....+.|
T Consensus 81 ~~y~~~~~~~~~~~~g~~~~~l~~G~~~~pF~~~LP~~~P-------~Sfeg~~G~irY~vk~~idr~~~~-~~~~~~~~ 152 (427)
T KOG3780|consen 81 ETYLDSKTILWTSSNGSNSRVLPPGNYEFPFSFTLPLNLP-------PSFEGKFGHVRYFVKAEIDRPWKL-NKKNRKPF 152 (427)
T ss_pred EEEeeeeeEEeeccCCCCceecCCCceEEeEeccCCCCCC-------CceeeCCceEEEEEEEEEecCCCC-CccceeeE
Confidence 4444442 2344566 4 8999999999999998744 699999999999999999999975 79999999
Q ss_pred EEEecCcccccCCCCCceeEEEecccccCCCccCCccccceEEEEEE-eccccCCCceEEEEEEE-EecCCeeEEEEEEE
Q 023426 176 IVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKM-STQCSLLDPITGELTVE-ASSVPIHSIDIHLL 253 (282)
Q Consensus 176 ~V~~~~~dl~~~p~~~~pv~f~I~~dtl~~~~i~~~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~-~s~i~Ik~iElqLi 253 (282)
.| ....|++..|....++.+.-.+ .+.. + .+..+.+.++..+ ++.|-.++.+...+.++ .++..++.+++.|+
T Consensus 153 ~V-~~~~~ln~~p~~~~~~~~~~~k-~~~~--~-~~~~g~v~~~~~ip~~~~~~ge~i~~~~~i~n~ss~~~~~~~~~l~ 227 (427)
T KOG3780|consen 153 TV-IETVDLNSSPSLLEPIISKASK-KLGC--V-CFSSGPVSLELTIPKTGYVPGETIPVTLEIENKSSRTIKKVKAKLI 227 (427)
T ss_pred EE-ecccccccCccccCcchhhhhh-eeeE--E-EecCCcEEEEEEcccccCcCCccEEEEEEEecCCCCcceeeEEEEE
Confidence 98 5566666555544544333222 1100 1 1344567788888 78899999999999998 77999999999999
Q ss_pred EEEEEEeCCc
Q 023426 254 RMESILLGEK 263 (282)
Q Consensus 254 R~Et~g~~~~ 263 (282)
++.++.....
T Consensus 228 q~~~~~~~~~ 237 (427)
T KOG3780|consen 228 QKISYLAFSY 237 (427)
T ss_pred EEEEEEeecC
Confidence 9999987653
No 5
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=99.89 E-value=3.2e-24 Score=177.23 Aligned_cols=133 Identities=23% Similarity=0.350 Sum_probs=88.4
Q ss_pred EEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecC-cceeEEEe--ecce---ecEEEeeeeEEe
Q 023426 38 VEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGG-SAGVVESL--YGVI---KPIKILKKSQEI 111 (282)
Q Consensus 38 ~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~-~~g~~e~~--~~~~---~~~~~~~~~~~l 111 (282)
|+|.||+++.+|++||.|+|+|.|.+.++++.++|+|++.|.+.+.|... ..+..... .... ....+++....+
T Consensus 1 ~~I~ld~~~~~y~~Ge~I~G~V~l~~~~~~~i~~i~v~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (149)
T PF00339_consen 1 FEIELDNPKPVYFPGEVISGKVVLELSKPIKIKSIKVRLKGRAKTKWSESKSSGSTFRKQTTPKVQYSEKKEYFDHESQL 80 (149)
T ss_dssp EEEEES-SEEEEESS--EEEEEEECTTT-TTTSEEEEEEEEEEEESSSSTTSTTCEEEEEEESTSSS-SSSSSSHHHHHH
T ss_pred CEEEECCCCCEECCCCEEEEEEEEEECCccceeEEEEEEEEEEEEEecCCCcceeeeeeEEecccccccceeeccceeEe
Confidence 68999999999999999999999999999999999999999999999843 22111110 0000 012333332222
Q ss_pred e----CCcccCCCceEeeeEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEEEEE
Q 023426 112 R----TSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVE 178 (282)
Q Consensus 112 a----~~G~Lp~G~~~fPF~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V~ 178 (282)
. ..+.|++|.|+|||+|+||.+ +++||+|.+++|+|.|+|.|+|||. .+...+++|+|.
T Consensus 81 ~~~~~~~~~l~~G~~~fpF~f~LP~~-------lP~S~~~~~g~I~Y~l~a~l~~~~~-~~~~~~~~~~v~ 143 (149)
T PF00339_consen 81 WGSEDGPNILPPGEYEFPFEFQLPSN-------LPSSFEGSHGSIRYKLKATLDRPGK-KDHKAKREFTVV 143 (149)
T ss_dssp HHH--------C-TTEEEEEE---TT-------S--SEEEE-SEEEEEEEEEESSTTS-E--CGGEEEEEE
T ss_pred eeeccceecccCCCEEEEEEEECCCC-------CCceEeccCcCEEEEEEEEEECCCC-CCcEEEEEEEEE
Confidence 1 145799999999999999987 5679999999999999999999996 479999999993
No 6
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=98.00 E-value=0.00041 Score=55.74 Aligned_cols=122 Identities=13% Similarity=0.233 Sum_probs=68.1
Q ss_pred EEEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCcc
Q 023426 37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGR 116 (282)
Q Consensus 37 ~~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G~ 116 (282)
.+.+.+++ ..|.+||.+.-.+.|++..+.+.++|++++.-.....-..... +.......+. .....+-
T Consensus 6 ~~~~~i~~--~~~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~~~~~~~~~~~-------~~~~~~~~v~---~~~~~~~ 73 (136)
T PF02752_consen 6 SLSISIPR--TAYVPGETIPVNVEIDNQSKKKIKKIKVSLVERITYKAKGGKD-------ESKSEKRVVA---KSKNCGV 73 (136)
T ss_dssp EEEEEES---SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEE-SS-----------S-EEEEEEEE---EEECCEB
T ss_pred EEEEEECC--CEECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEeeccc-------cceEEEEEEE---EEecCCc
Confidence 36677755 6799999999999999999999999999998776543111100 0000011111 1111222
Q ss_pred cCCCceEee--eEEEcCCCCCcccccccceE--EeeeeEEEEEEEEEEEecccCCCceEEEEEEE
Q 023426 117 IGSGTTEVP--FSMNLKQHGEENLERFYETF--HGADINIQYLVTVDIMRGYLHKSLSATVEFIV 177 (282)
Q Consensus 117 Lp~G~~~fP--F~F~Lp~~~~~~~~~l~ESy--~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V 177 (282)
.+.+...|- ..|.+|.. +..|. .|..++|.|.|++++.-++...++..+.++++
T Consensus 74 ~~~~~~~~~~~~~l~lP~~-------~~~s~~~~~~~i~v~Y~l~v~~~~~~~~~~~~~~~PI~I 131 (136)
T PF02752_consen 74 DPGSSGSFEFNIQLQLPSN-------LPPSTSTNSRLIQVEYQLEVTVKLSGCTSDLRLELPITI 131 (136)
T ss_dssp -B-TTEEEEEEEEE------------B-----CGGGSEEEEEEEEEEEEEETTSEEEEEEEEEEE
T ss_pred cCCCCceEEEEEEEcCCCc-------cCcccccCCcEEEEEEEEEEEEEECCceeEEEEEccEEE
Confidence 333444455 78888854 33355 89999999999999998853345666666665
No 7
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=97.88 E-value=0.00095 Score=60.33 Aligned_cols=117 Identities=17% Similarity=0.169 Sum_probs=77.8
Q ss_pred eEEEEEECCCCCCcCCCCcEeEEEEEEeCC-ceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCC
Q 023426 36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSS-SIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTS 114 (282)
Q Consensus 36 ~~~~I~fd~~~~vY~~GE~VsG~V~i~~~~-~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~ 114 (282)
+++|-+|+++. |+|||+|+|.|.|+=.. .-+..+|.+.+.=.++..-..+.. . ....+ ....++.+
T Consensus 13 akVDT~L~~~~--~~pGe~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~d~~~------~---~~~~~--~~~~v~~~ 79 (218)
T PF07070_consen 13 AKVDTVLEKPS--VRPGETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESDDKEY------T---QEVEL--ARVRVSGP 79 (218)
T ss_pred ceEEEEECCCC--ccCCCEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecCCCeE------E---EEEEE--EEEEeCCC
Confidence 45899998755 99999999999999554 678888888887554442111100 0 00111 12345555
Q ss_pred cccCCCc-eEeeeEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEEEE
Q 023426 115 GRIGSGT-TEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIV 177 (282)
Q Consensus 115 G~Lp~G~-~~fPF~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V 177 (282)
-.|.+|. +++||+|+||...|. |- +..+|+++-.++=.+. -|-.-...+.|
T Consensus 80 f~I~~ge~~~iPF~~~lP~etPi-------T~----~~~~v~l~T~LdI~~a-vD~~D~D~i~V 131 (218)
T PF07070_consen 80 FTIEPGEEKEIPFSFPLPWETPI-------TE----GGMRVWLRTGLDIAGA-VDPGDLDPIEV 131 (218)
T ss_pred EEECCCCEEEEeEEEECCCCCCc-------cC----CCcEEEEEEEEEeCCC-CCCCCceeEEE
Confidence 5665554 589999999976432 22 5889999999988875 36666677777
No 8
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=96.40 E-value=0.18 Score=48.00 Aligned_cols=200 Identities=11% Similarity=0.204 Sum_probs=105.1
Q ss_pred EEEEECCCCCC--cCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCc
Q 023426 38 VEIKLSRSNRI--YRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSG 115 (282)
Q Consensus 38 ~~I~fd~~~~v--Y~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G 115 (282)
+++.+-+-+=+ -.-=|+|.|.|.|+.. =++-|-|.+.+.. ...+.+.....+-.-|. -+++-.+..+-|++
T Consensus 17 iT~YLgkRDFvDhvd~vdPvDGvVlvDpe-YlK~RKvfv~L~c--aFRYGREDldVlGLtFr----KdL~~~~~Qv~Pp~ 89 (402)
T KOG3865|consen 17 ITVYLGKRDFVDHVDQVDPVDGVVLVDPE-YLKDRKVFVQLTC--AFRYGREDLDVLGLTFR----KDLYLATVQVYPPP 89 (402)
T ss_pred EEEEecccccccccccccccceeEEEChH-HhccceEEEEEEe--eeecccccceeeeeEEE----eeeEEEEEEeeCCC
Confidence 56666542211 1123789999999733 4555666665532 22222222211211121 12333333444543
Q ss_pred c-------c------CCCceEeeeEEEcCCCCCcccc-cccceEEeeeeEEEEEEEEEEEecccCCCce-EEEEEEEEec
Q 023426 116 R-------I------GSGTTEVPFSMNLKQHGEENLE-RFYETFHGADINIQYLVTVDIMRGYLHKSLS-ATVEFIVETD 180 (282)
Q Consensus 116 ~-------L------p~G~~~fPF~F~Lp~~~~~~~~-~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~-~~~eF~V~~~ 180 (282)
. | .=|.+.|||-|+.|+++|--+- .+-..=.|+---|.|.||+-+--.---+.+. -.....+ .+
T Consensus 90 ~~~~plT~lQErLlkKLG~nAyPF~f~~pp~~P~SVtLQp~p~D~gKpcGVdyevkaF~~~s~edk~hKr~sVrL~I-RK 168 (402)
T KOG3865|consen 90 EDSRPLTRLQERLLKKLGSNAYPFTFEFPPNLPCSVTLQPGPEDTGKPCGVDYEVKAFVADSEEDKIHKRNSVRLVI-RK 168 (402)
T ss_pred cCCCcccHHHHHHHHHhCCCCCceEEeCCCCCCceEEeccCCccCCCcccceEEEEEEecCCcccccccccceeeee-ee
Confidence 1 1 1356779999999988541000 0112456777789999999875432111111 1111111 21
Q ss_pred CcccccCCCC--CceeEEEecccccCCCccCCccccceEEEEEE-eccccCCCceEEEEEEE-EecCCeeEEEEEEEEEE
Q 023426 181 KADLLERPVS--PEMVVFYITQDTQRHPLLPELKSGGFKVTGKM-STQCSLLDPITGELTVE-ASSVPIHSIDIHLLRME 256 (282)
Q Consensus 181 ~~dl~~~p~~--~~pv~f~I~~dtl~~~~i~~~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~-~s~i~Ik~iElqLiR~E 256 (282)
.+ .+|.. +.|. .+.+++-+ +..+..|++..+ +-.|+=+++|.-.+.+. +|+..+|+|.+.+.+.-
T Consensus 169 vq---yAP~~~GpqP~-~~v~k~Fl-------mS~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~a 237 (402)
T KOG3865|consen 169 VQ---YAPLEPGPQPS-AEVSKQFL-------MSDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQVA 237 (402)
T ss_pred ee---ecCCCCCCCch-hHhhHhhc-------cCCCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEeec
Confidence 11 12211 1221 01112111 344567899989 77788899999888888 89999999999887653
No 9
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [].
Probab=96.35 E-value=0.093 Score=51.71 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=36.1
Q ss_pred EEEE-eccccCCCceEEEEEEEEec-CCeeEEEEEEEEEEEEE
Q 023426 219 TGKM-STQCSLLDPITGELTVEASS-VPIHSIDIHLLRMESIL 259 (282)
Q Consensus 219 ~g~~-k~~~~l~d~i~G~i~~~~s~-i~Ik~iElqLiR~Et~g 259 (282)
.+.+ |..|.++|.|.|-+.|..+. +++..+-+.|-..|++-
T Consensus 307 ~~~LsK~~yrlGE~I~g~idf~~~~~~~c~~v~~~LEs~E~v~ 349 (415)
T PF08737_consen 307 RLSLSKPAYRLGEDIVGTIDFNDASTIPCYQVSASLESEETVN 349 (415)
T ss_pred EEEecCCCcccCCeEEEEEEcCCCCcceeEEEEEEEEEEEEeC
Confidence 4455 78899999999999999888 99999999999999963
No 10
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=96.15 E-value=0.0069 Score=53.62 Aligned_cols=44 Identities=16% Similarity=0.325 Sum_probs=38.5
Q ss_pred eCCcccCCCceEeeeEEEcCCCCCcccccccceEE---eeeeEEEEEEEEEEEe
Q 023426 112 RTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFH---GADINIQYLVTVDIMR 162 (282)
Q Consensus 112 a~~G~Lp~G~~~fPF~F~Lp~~~~~~~~~l~ESy~---G~~g~vrY~vkv~i~R 162 (282)
+.+-.|+.|.|.|||+|-+|.. |+.|-. +..++|.|.+.|+..-
T Consensus 42 ~~~t~l~~G~h~fPFS~LiPG~-------LPaS~~lgs~~l~~I~Yel~A~a~~ 88 (191)
T PF13002_consen 42 THPTTLTKGSHAFPFSYLIPGH-------LPASMDLGSTPLVSIKYELKAEATY 88 (191)
T ss_pred cCccccCCCcccCCeeEECCCC-------CccccccCCCCcEEEEEEEEEEEEE
Confidence 3455799999999999999976 667888 8899999999999887
No 11
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=94.64 E-value=0.29 Score=38.92 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=38.1
Q ss_pred cceEEEEEE-eccccCCCceEEEEEEE-EecCCeeEEEEEEEEEEEEEeCCc
Q 023426 214 GGFKVTGKM-STQCSLLDPITGELTVE-ASSVPIHSIDIHLLRMESILLGEK 263 (282)
Q Consensus 214 ~~F~i~g~~-k~~~~l~d~i~G~i~~~-~s~i~Ik~iElqLiR~Et~g~~~~ 263 (282)
+..+++..+ ++.|..+|.+..++.++ .++.+|++|++.|+|+-++.+..+
T Consensus 3 g~i~~~~~i~~~~~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~~~~~~~~~ 54 (136)
T PF02752_consen 3 GKISLSISIPRTAYVPGETIPVNVEIDNQSKKKIKKIKVSLVERITYKAKGG 54 (136)
T ss_dssp EEEEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEE-SS--
T ss_pred CEEEEEEEECCCEECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEeec
Confidence 345788888 78899999999998888 889999999999999999987653
No 12
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=93.80 E-value=0.5 Score=42.81 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=59.2
Q ss_pred ccccceEEEEEE-eccccCCCceEEEEEEE--EecCCeeEEEEEEEEEEEEEeCCceeeeeeeEEEEEeeccc
Q 023426 211 LKSGGFKVTGKM-STQCSLLDPITGELTVE--ASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQMEMSV 280 (282)
Q Consensus 211 ~~~~~F~i~g~~-k~~~~l~d~i~G~i~~~--~s~i~Ik~iElqLiR~Et~g~~~~~~~e~teiq~iqI~dg~ 280 (282)
++++.=++.-.+ +..|..++.+.|++.+. .++-.|.+|+|.|+.+=..-.+++..+..-+++++++.++.
T Consensus 8 ~GiG~akVDT~L~~~~~~pGe~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~d~~~~~~~~~~~~~v~~~f 80 (218)
T PF07070_consen 8 IGIGGAKVDTVLEKPSVRPGETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESDDKEYTQEVELARVRVSGPF 80 (218)
T ss_pred cCCCCceEEEEECCCCccCCCEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecCCCeEEEEEEEEEEEeCCCE
Confidence 455677888888 88999999999999999 79999999999999765555666667788899999998864
No 13
>PF04425 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This domain is the N terminus of Saccharomyces cerevisiae (Baker's yeast) Bul1. Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. The C terminus is IPR007520 from INTERPRO.
Probab=92.57 E-value=0.5 Score=46.99 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=32.3
Q ss_pred CcCCCCcEeEEEEEEeCC--ceeEeeEEEEEEEEEEEE
Q 023426 48 IYRPSEPLQGKIVIKSSS--SIFHYGIHLTVNGSANLQ 83 (282)
Q Consensus 48 vY~~GE~VsG~V~i~~~~--~l~h~gI~i~~~G~~~~~ 83 (282)
=|..||.|.|-|+|++.. |+...=..|.++|.+.+-
T Consensus 159 Ey~qGD~I~GyvtI~N~S~~pIpFdMFyV~lEG~~~v~ 196 (438)
T PF04425_consen 159 EYTQGDIIHGYVTIENTSSKPIPFDMFYVSLEGTISVV 196 (438)
T ss_pred cccCCCEEEEEEEEEECCCCCcccceEEEEEEEEEEEc
Confidence 599999999999999764 899999999999998763
No 14
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=90.15 E-value=18 Score=34.85 Aligned_cols=45 Identities=22% Similarity=0.403 Sum_probs=39.9
Q ss_pred EEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEE
Q 023426 38 VEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQV 84 (282)
Q Consensus 38 ~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~ 84 (282)
+++.+|+ .+|+-||+++-.|.|++...-..+-||+.+.-.+++.+
T Consensus 197 LevsLDk--EiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~adi~L 241 (402)
T KOG3865|consen 197 LEVSLDK--EIYYHGEPISVNVHVTNNSNKTVKKIKISVRQVADICL 241 (402)
T ss_pred EEEEecc--hheecCCceeEEEEEecCCcceeeeeEEEeEeeceEEE
Confidence 7888876 68999999999999999998889999999998888753
No 15
>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.
Probab=88.71 E-value=9.8 Score=35.63 Aligned_cols=104 Identities=18% Similarity=0.276 Sum_probs=54.2
Q ss_pred EEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeCCccc
Q 023426 38 VEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRI 117 (282)
Q Consensus 38 ~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~~G~L 117 (282)
+.|.|.-.+..|.=.|.+.|+|.+.+.+ ++.+.+.|.+. ..++.-.+.+. ..|+ .++- ..++ -+|.-
T Consensus 166 lhief~~~k~~~~l~d~i~G~i~f~lv~-~kIk~~elqLi-R~Et~g~~~~~-~~e~-------t~i~--~~eI-mDG~p 232 (275)
T PF03643_consen 166 LHIEFEYDKSKYHLKDVITGKIYFLLVR-IKIKSMELQLI-RVETCGCGENY-AKES-------TEIQ--KIEI-MDGAP 232 (275)
T ss_dssp EEEEEEES-SEEETT-EEEEEEEEEEES-S-EEEEEEEEE-EEEEECECCCE-EEEE-------EEEE--EEEE-ESS--
T ss_pred EEEEEEEcccceECCCCEEEEEEEEEEe-ecceEEEEEEE-EEEEEecCCcc-cccc-------eEEE--EEEe-ecCCc
Confidence 5566654556799999999999887554 44444444443 22221111110 0110 1111 1123 56766
Q ss_pred CCCceEeeeEEEcCCCCCcccccccceEEeee--eEEEEEEEEEEE
Q 023426 118 GSGTTEVPFSMNLKQHGEENLERFYETFHGAD--INIQYLVTVDIM 161 (282)
Q Consensus 118 p~G~~~fPF~F~Lp~~~~~~~~~l~ESy~G~~--g~vrY~vkv~i~ 161 (282)
-.|. .+||-+-||.- .+..||...+ -+|+|+|.+.|-
T Consensus 233 ~rge-~IPirl~l~~l------~l~Pt~~~~~~~FsV~y~lnlvli 271 (275)
T PF03643_consen 233 CRGE-SIPIRLFLPRL------FLCPTYKNVNNKFSVEYELNLVLI 271 (275)
T ss_dssp -TT--EEEEEEECCCT-----------EEEECTTEEEEEEEEEEEE
T ss_pred cccc-eeeEEEEcCCc------ccCCcchhcCCcEEEEEEEEEEEE
Confidence 6675 59999999953 4777999655 999999998763
No 16
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=86.00 E-value=13 Score=28.31 Aligned_cols=25 Identities=28% Similarity=0.572 Sum_probs=18.2
Q ss_pred EEEEECCCCCCcCCCCcEeEEEEEEeC
Q 023426 38 VEIKLSRSNRIYRPSEPLQGKIVIKSS 64 (282)
Q Consensus 38 ~~I~fd~~~~vY~~GE~VsG~V~i~~~ 64 (282)
+-|..|| .+|+|||+|.=++.+...
T Consensus 2 ~~i~TDr--~iYrPGetV~~~~~~~~~ 26 (99)
T PF01835_consen 2 IFIQTDR--PIYRPGETVHFRAIVRDL 26 (99)
T ss_dssp EEEEESS--SEE-TTSEEEEEEEEEEE
T ss_pred EEEECCc--cCcCCCCEEEEEEEEecc
Confidence 3456666 689999999999987644
No 17
>COG4326 Spo0M Sporulation control protein [General function prediction only]
Probab=84.58 E-value=5.4 Score=36.20 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=59.2
Q ss_pred EEEEEECCCCCCcCCCCcEeEEEEEEeCC---ceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeEEeeC
Q 023426 37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSS---SIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRT 113 (282)
Q Consensus 37 ~~~I~fd~~~~vY~~GE~VsG~V~i~~~~---~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~la~ 113 (282)
++|-.+.+ .+|+||+.|.|.|.|.=.+ .++---+++..+=.+++.=++ +..+. .+.+ +.-
T Consensus 34 KVDt~L~~--~~~~PG~~v~g~vhv~GG~~AQdI~~I~LkL~t~Y~~evdDe~---~~~~~--------t~~n----~rl 96 (270)
T COG4326 34 KVDTVLQQ--EVLYPGQSVKGIVHVYGGATAQDIDNIELKLCTCYIAEVDDER---GQQQG--------TLAN----WRL 96 (270)
T ss_pred hhhhhhhh--ccccCCceEEEEEEEecCchHhhhhhhhhhheeeEEEEecccc---ceeEE--------EEEE----Eee
Confidence 45544433 4799999999999998443 444434444443333332111 11111 0111 111
Q ss_pred Cc--cc-CCCceEeeeEEEcCCCCCcccccccceEEeeeeEEEEEEEEEEEecccCCCceEEEEEEEE
Q 023426 114 SG--RI-GSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVE 178 (282)
Q Consensus 114 ~G--~L-p~G~~~fPF~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i~Rp~~~~d~~~~~eF~V~ 178 (282)
++ ++ |...+.|||+|.||-+-| =| .|++.-+|+--+|-...- |.+-+.-.+|.
T Consensus 97 ~~~fTIqpgEe~~fpf~l~lP~~tP-------vT----~G~~~V~v~TgLDI~~ai-dp~D~D~l~Vr 152 (270)
T COG4326 97 PYAFTIQPGEERNFPFELSLPWNTP-------VT----IGDAKVWVETGLDIALAI-DPTDKDILTVR 152 (270)
T ss_pred cceEEecCCceEeccEEEecCCCCc-------ee----ecceeEEEEeccchhccC-CCcccceEEEe
Confidence 22 23 334578999999997622 13 346777776666655432 44444445563
No 18
>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only]
Probab=82.12 E-value=50 Score=31.88 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=70.5
Q ss_pred CCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEEEecCcceeEEEeecceecEEEeeeeE-EeeCCcc-cCCCce
Q 023426 45 SNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQ-EIRTSGR-IGSGTT 122 (282)
Q Consensus 45 ~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~-~la~~G~-Lp~G~~ 122 (282)
+...|.+||.+...+.|.+........+++++.=.+...-...+ +.. ........+ .....+. -+..+.
T Consensus 195 p~~~~~~ge~i~~~~~i~n~ss~~~~~~~~~l~q~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~v~~~~~~ 265 (427)
T KOG3780|consen 195 PKTGYVPGETIPVTLEIENKSSRTIKKVKAKLIQKISYLAFSYG----EHT-----KTKKSEKTLIKSRGSLEVAPRSED 265 (427)
T ss_pred ccccCcCCccEEEEEEEecCCCCcceeeEEEEEEEEEEEeecCC----ccc-----cceeeeeEEeeeccccccCCCCcc
Confidence 45679999999999999998777777777777654433211100 000 000111111 1112222 233445
Q ss_pred EeeeEEEcCCCCCcccccccceEE--eeeeEEEEEEEEEEEecc-cCCCceEEEEEEEEe
Q 023426 123 EVPFSMNLKQHGEENLERFYETFH--GADINIQYLVTVDIMRGY-LHKSLSATVEFIVET 179 (282)
Q Consensus 123 ~fPF~F~Lp~~~~~~~~~l~ESy~--G~~g~vrY~vkv~i~Rp~-~~~d~~~~~eF~V~~ 179 (282)
.|-.+|.+|... + |++ ...+++.|.+++.+.-+- ...++..+....+-.
T Consensus 266 ~~~~~~~iP~~~-------P-s~~~~~~~i~v~y~l~v~~~~~~~~~~~~~l~~pi~igt 317 (427)
T KOG3780|consen 266 KFEKELRIPPVP-------P-SILPDTPIIRVEYELKVTLKTSSLRHSELALELPIIIGT 317 (427)
T ss_pred ccceEEEcCCCC-------C-ccCCCCceEEEEEEEEEEEecCcccccceeeeeceEEec
Confidence 677788888752 1 555 489999999999998762 134577777777754
No 19
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [].
Probab=80.94 E-value=21 Score=35.26 Aligned_cols=96 Identities=17% Similarity=0.320 Sum_probs=57.3
Q ss_pred CCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEEEEE--EecC-cceeEEEeecceecEEEeeeeEEeeCCcccCCCceE
Q 023426 47 RIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQ--VRGG-SAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTE 123 (282)
Q Consensus 47 ~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~--~~~~-~~g~~e~~~~~~~~~~~~~~~~~la~~G~Lp~G~~~ 123 (282)
..|+-||+|.|.+.+.....+++.++.+.++=.=.+. +.-+ +... ++. .........+.+-+. ...
T Consensus 313 ~~yrlGE~I~g~idf~~~~~~~c~~v~~~LEs~E~v~~~~~~~~~~~~-----~~~-~~~~~~~~~e~~~~~-----~~~ 381 (415)
T PF08737_consen 313 PAYRLGEDIVGTIDFNDASTIPCYQVSASLESEETVNPSYAVRSSAKI-----NRV-TRKVHAEHHEICLDS-----RSR 381 (415)
T ss_pred CCcccCCeEEEEEEcCCCCcceeEEEEEEEEEEEEeCchhcccccccc-----ccc-EEEEEEEEeeeecCC-----cce
Confidence 3799999999999998776688888888887432111 0000 0000 000 011111111221111 113
Q ss_pred eeeEEEcCCCCCcccccccceEEeeeeEEEEEEEEEE
Q 023426 124 VPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDI 160 (282)
Q Consensus 124 fPF~F~Lp~~~~~~~~~l~ESy~G~~g~vrY~vkv~i 160 (282)
-+|.+..|..++| +|.=..+.++|.|+.+.
T Consensus 382 ~~f~l~IP~~~tp-------~F~T~~v~lkW~LrfeF 411 (415)
T PF08737_consen 382 TSFSLPIPLSATP-------QFQTSGVSLKWRLRFEF 411 (415)
T ss_pred EEEEeeCCCCCCC-------ceEeCCEEEEEEEEEEE
Confidence 5899999987554 88888899999998875
No 20
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=79.35 E-value=3 Score=33.71 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=32.1
Q ss_pred eccccCCCceEEEEEEE-EecCCeeEEEEEEEEEEEEEeCC
Q 023426 223 STQCSLLDPITGELTVE-ASSVPIHSIDIHLLRMESILLGE 262 (282)
Q Consensus 223 k~~~~l~d~i~G~i~~~-~s~i~Ik~iElqLiR~Et~g~~~ 262 (282)
+..|..+|.|.|++.+. ...++|++|.|+|.=++.+....
T Consensus 9 ~~~y~~Ge~I~G~V~l~~~~~~~i~~i~v~l~G~~~~~~~~ 49 (149)
T PF00339_consen 9 KPVYFPGEVISGKVVLELSKPIKIKSIKVRLKGRAKTKWSE 49 (149)
T ss_dssp EEEEESS--EEEEEEECTTT-TTTSEEEEEEEEEEEESSSS
T ss_pred CCEECCCCEEEEEEEEEECCccceeEEEEEEEEEEEEEecC
Confidence 45588999999999999 66699999999999998887664
No 21
>TIGR03833 conserved hypothetical protein. A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895. The function is unknown.
Probab=74.65 E-value=5 Score=29.29 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=34.3
Q ss_pred CCCeeEEEEEECCCCCCcCCCCcEeEEEE-EEeCCceeEeeEEEEEE
Q 023426 32 QIDMSTVEIKLSRSNRIYRPSEPLQGKIV-IKSSSSIFHYGIHLTVN 77 (282)
Q Consensus 32 ~~~m~~~~I~fd~~~~vY~~GE~VsG~V~-i~~~~~l~h~gI~i~~~ 77 (282)
.+++. ++|++++..+ .|....|.|. |-++.+...+|||+.++
T Consensus 9 ~~G~~-V~IvlK~DQ~---tG~lt~G~V~diLT~s~~Hp~GIKVrL~ 51 (62)
T TIGR03833 9 KPGLS-VDIVLKQDQR---TGKLTRGIVKDILTNSPTHPHGIKVRLE 51 (62)
T ss_pred CCCCE-EEEEEeccCC---CCceeeEEhhhhhcCCCCCCCceEEEEe
Confidence 35555 9999998776 8999999995 54566899999999985
No 22
>PF09962 DUF2196: Uncharacterized conserved protein (DUF2196); InterPro: IPR019240 A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895 from COG. The function is unknown.
Probab=71.77 E-value=6.1 Score=28.93 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=34.1
Q ss_pred CCCeeEEEEEECCCCCCcCCCCcEeEEEE-EEeCCceeEeeEEEEEE
Q 023426 32 QIDMSTVEIKLSRSNRIYRPSEPLQGKIV-IKSSSSIFHYGIHLTVN 77 (282)
Q Consensus 32 ~~~m~~~~I~fd~~~~vY~~GE~VsG~V~-i~~~~~l~h~gI~i~~~ 77 (282)
.+++. ++|++++..+ .|+...|.|. |-+..+...+|||+.++
T Consensus 10 ~~G~~-V~IVlK~dQ~---tg~lt~GiV~~iLT~s~~HP~GIKVrL~ 52 (62)
T PF09962_consen 10 KPGIT-VEIVLKQDQR---TGKLTEGIVKDILTNSPTHPHGIKVRLE 52 (62)
T ss_pred cCCCE-EEEEECCCCC---cCccccEEhheeecCCCCCCCCcEEEec
Confidence 35555 9999998665 8999999995 55566899999999986
No 23
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=61.30 E-value=92 Score=36.29 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=17.1
Q ss_pred CCCCCcCCCCcEeEEEEEEeC
Q 023426 44 RSNRIYRPSEPLQGKIVIKSS 64 (282)
Q Consensus 44 ~~~~vY~~GE~VsG~V~i~~~ 64 (282)
.++.+|+|||+|...+.++-.
T Consensus 400 tDRglYRpGE~v~~~~~~R~~ 420 (1621)
T COG2373 400 TDRGLYRPGETVHVNALLRDF 420 (1621)
T ss_pred cCcccCCCCceeeeeeeehhh
Confidence 345699999999999998844
No 24
>TIGR03517 GldM_gliding gliding motility-associated protein GldM. This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.
Probab=56.00 E-value=65 Score=33.03 Aligned_cols=46 Identities=24% Similarity=0.412 Sum_probs=35.4
Q ss_pred CCCCcCCCCcEeEEEEEEeCC-----ceeEeeEEEEEEEEEEEEEecCcce
Q 023426 45 SNRIYRPSEPLQGKIVIKSSS-----SIFHYGIHLTVNGSANLQVRGGSAG 90 (282)
Q Consensus 45 ~~~vY~~GE~VsG~V~i~~~~-----~l~h~gI~i~~~G~~~~~~~~~~~g 90 (282)
....|++||+..|+|.|...+ .+...|-.+...|.+.+.++..++|
T Consensus 242 ~s~~v~~Ge~~~a~vvL~a~ds~~~P~~~vnG~~l~~~G~g~~~~~aggvG 292 (523)
T TIGR03517 242 KSDAVFAGETYEAEVVLGASDSTLQPTMFVNGQLLTVEGIGVYTFKAGGVG 292 (523)
T ss_pred CCceeecCCeEEEEEEEEecCCCcCceEEECCeEcccCCcEEEEEecCCce
Confidence 455799999999999998432 4888888888788877777655554
No 25
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=32.08 E-value=8.5e+02 Score=28.41 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=18.1
Q ss_pred eEEEEEEeccccCCCceEEEEEEE
Q 023426 216 FKVTGKMSTQCSLLDPITGELTVE 239 (282)
Q Consensus 216 F~i~g~~k~~~~l~d~i~G~i~~~ 239 (282)
.++++.....|.-+.|+.|..++.
T Consensus 227 ~~~~~~v~a~y~ygkpV~g~~~v~ 250 (1436)
T KOG1366|consen 227 KELEVTVCARYTYGKPVTGKATVS 250 (1436)
T ss_pred ceeEEEEeeeeecCCcccceEEEE
Confidence 456666667788899999997665
No 26
>KOG4785 consensus Transcription factor CBF, beta subunit [Transcription]
Probab=31.58 E-value=1e+02 Score=26.53 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=38.6
Q ss_pred hhhcccCCCCeeE----EEEEECCCCCCcCCC-----CcEeEEEEEEeCCceeEeeEEEEEEEEEEEE
Q 023426 25 FVLKLKLQIDMST----VEIKLSRSNRIYRPS-----EPLQGKIVIKSSSSIFHYGIHLTVNGSANLQ 83 (282)
Q Consensus 25 ~~~~~~~~~~m~~----~~I~fd~~~~vY~~G-----E~VsG~V~i~~~~~l~h~gI~i~~~G~~~~~ 83 (282)
-+.++.+++.... +.++|.-...-|-.. +.-.|+|.| +.++=.+||-+.|.|.+++.
T Consensus 47 ~cr~g~~e~sFvatGtNl~l~f~~~q~qt~~~e~~d~~re~gkv~~--k~p~i~NGvcV~~~GwidlE 112 (177)
T KOG4785|consen 47 ACRDGRSEIAFVATGTNLSLQFFGEQRQTPSREYVDLEREAGKVYL--KAPMILNGVCVIWKGWIDLE 112 (177)
T ss_pred HhhcCCceeeEEeecCceeEEEeeccCCCCcchhhhhhhhcCceec--ccceEeeeeEEEEEeeechh
Confidence 3455556655542 777777544444222 333599988 56799999999999988763
No 27
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=30.03 E-value=2.4e+02 Score=21.67 Aligned_cols=41 Identities=12% Similarity=0.324 Sum_probs=30.4
Q ss_pred eeEEEEEECCCCCCcCCCCcEeEEEEEEeCCceeEeeEEEEEEEEE
Q 023426 35 MSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSA 80 (282)
Q Consensus 35 m~~~~I~fd~~~~vY~~GE~VsG~V~i~~~~~l~h~gI~i~~~G~~ 80 (282)
|...+|.... +.+...+.|-+.|++...+-.++|+| ++|.-
T Consensus 1 M~itdVri~~----~~~~~~lka~asV~~dd~f~I~~ikV-ieg~~ 41 (84)
T PF04026_consen 1 MKITDVRIRK----IEPEGKLKAFASVTFDDCFVIHDIKV-IEGEK 41 (84)
T ss_dssp --EEEEEEEE----TTSSSSEEEEEEEEETTTEEEEEEEE-EEETT
T ss_pred CccEEEEEEE----ecCCCCEEEEEEEEECCEEEEEeEEE-EECCC
Confidence 4444555533 44568999999999999999999999 77753
No 28
>PF08985 DUF1888: Domain of unknown function (DUF1888); InterPro: IPR015078 This entry represents a family of hypothetical bacterial proteins.; PDB: 3NJG_A 3NJF_A 3NJH_D 3N55_A 3NJN_B 3NJI_B 3NJJ_A 3NJL_A 3NJM_A 3NJK_A ....
Probab=26.63 E-value=1.3e+02 Score=25.00 Aligned_cols=29 Identities=17% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCc--C--CCCcEeEEEEEEeCC
Q 023426 37 TVEIKLSRSNRIY--R--PSEPLQGKIVIKSSS 65 (282)
Q Consensus 37 ~~~I~fd~~~~vY--~--~GE~VsG~V~i~~~~ 65 (282)
.+.|.|++...+| . +|+.++|-|+|+...
T Consensus 12 ~V~V~l~n~ep~F~Yt~~~G~~~~G~v~Vt~~~ 44 (124)
T PF08985_consen 12 QVNVTLENGEPVFSYTDASGEPCTGDVTVTEAT 44 (124)
T ss_dssp EEEEEEETTEEEEEEE-TTSBEE-S-EEESSSE
T ss_pred EEEEEeCCCCcEEEEEcCCCCCccCCEEEeccc
Confidence 4778888655543 2 499999999998654
No 29
>KOG3265 consensus Histone chaperone involved in gene silencing [Transcription; Chromatin structure and dynamics]
Probab=23.85 E-value=98 Score=28.52 Aligned_cols=42 Identities=17% Similarity=0.337 Sum_probs=25.7
Q ss_pred CcccCCCceEeeeEEEcCCCCCcccccc-------------cceEEee-eeEEEEEEEEEE
Q 023426 114 SGRIGSGTTEVPFSMNLKQHGEENLERF-------------YETFHGA-DINIQYLVTVDI 160 (282)
Q Consensus 114 ~G~Lp~G~~~fPF~F~Lp~~~~~~~~~l-------------~ESy~G~-~g~vrY~vkv~i 160 (282)
-|=+|.|+|.|-|+=--|. ..++ -.||+|. |++|-|+|....
T Consensus 62 VGPVP~G~~~FVf~AD~Pd-----~~kIP~~d~vGVTviLltC~Y~gQEFIRvGYyVnNeY 117 (250)
T KOG3265|consen 62 VGPVPVGRHKFVFQADAPD-----PSKIPEDDIVGVTVILLTCSYRGQEFIRVGYYVNNEY 117 (250)
T ss_pred eccccccceEEEEecCCCC-----cccCcccceeeeEEEEEEEEEcCceeEEEEEEecCCC
Confidence 3679999985555433332 2333 3478874 678888885543
No 30
>COG1918 FeoA Fe2+ transport system protein A [Inorganic ion transport and metabolism]
Probab=20.32 E-value=1.3e+02 Score=22.72 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=28.4
Q ss_pred eccccCCCceEEEEEEEEecCCeeEEEEEEEEEEE
Q 023426 223 STQCSLLDPITGELTVEASSVPIHSIDIHLLRMES 257 (282)
Q Consensus 223 k~~~~l~d~i~G~i~~~~s~i~Ik~iElqLiR~Et 257 (282)
.....++||+. +.+..+++.+++=|.+.|.+|-
T Consensus 41 i~~aplgdPi~--v~v~g~~~aLRr~eA~~I~V~~ 73 (75)
T COG1918 41 VRKAPLGDPIL--VEVRGTRLALRKGEAAKIEVEE 73 (75)
T ss_pred EEecCCCCCEE--EEECCEEEEEccccccceEEEe
Confidence 34567789999 8888999999999999999884
Done!