BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023427
         (282 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 101/153 (66%), Gaps = 8/153 (5%)

Query: 8   PGFRFHPTEDELLNFYLRNIVFGKKSHFDIIGFLNIYHHDPWELPGLSKIGEREWYFFVP 67
           PGFRF+PT++EL+  YL     G      +I  +++Y  DPW LP  +  GE+EWYFF P
Sbjct: 22  PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP 81

Query: 68  RDRKHGSGGRPNRTTEHGFWKATGSDRKIVSLSDPKRVIGLRKTLVFYEGRAPKGHKTDW 127
           RDRK+ +G RPNR    G+WKATG+D KI+S    +  +G++K LVFY G+APKG KT+W
Sbjct: 82  RDRKYPNGSRPNRVAGSGYWKATGTD-KIISTEGQR--VGIKKALVFYIGKAPKGTKTNW 138

Query: 128 VMNEYRL-----PDGCPLPKDIVLCKIYRKATS 155
           +M+EYRL      +G     D VLC+IY+K +S
Sbjct: 139 IMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 171


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 101/153 (66%), Gaps = 8/153 (5%)

Query: 8   PGFRFHPTEDELLNFYLRNIVFGKKSHFDIIGFLNIYHHDPWELPGLSKIGEREWYFFVP 67
           PGFRF+PT++EL+  YL     G      +I  +++Y  DPW LP  +  GE+EWYFF P
Sbjct: 19  PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP 78

Query: 68  RDRKHGSGGRPNRTTEHGFWKATGSDRKIVSLSDPKRVIGLRKTLVFYEGRAPKGHKTDW 127
           RDRK+ +G RPNR    G+WKATG+D KI+S    +  +G++K LVFY G+APKG KT+W
Sbjct: 79  RDRKYPNGSRPNRVAGSGYWKATGTD-KIISTEGQR--VGIKKALVFYIGKAPKGTKTNW 135

Query: 128 VMNEYRL-----PDGCPLPKDIVLCKIYRKATS 155
           +M+EYRL      +G     D VLC+IY+K +S
Sbjct: 136 IMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168


>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  147 bits (372), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 101/160 (63%), Gaps = 14/160 (8%)

Query: 4   ELELP-GFRFHPTEDELLNFYLRNIVFGKKSHFDIIGFLNIYHHDPWELPGLSKIGEREW 62
           EL LP GFRFHPT+DEL+  YL     G++    II  +++Y  DPW+LP  +  G REW
Sbjct: 12  ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREW 71

Query: 63  YFFVPRDRKHGSGGRPNRTTEHGFWKATGSDRKIVSLSDPKRVIGLRKTLVFYEGRAPKG 122
           YFF PRDRK+ +G RPNR   +G+WKATG+D+ +       R +G++K LVFY G+AP+G
Sbjct: 72  YFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG---RTLGIKKALVFYAGKAPRG 128

Query: 123 HKTDWVMNEYRLPDGCPLPK----------DIVLCKIYRK 152
            KTDW+M+EYRL D                D VLC++Y K
Sbjct: 129 VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.137    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,905,463
Number of Sequences: 62578
Number of extensions: 362711
Number of successful extensions: 751
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 3
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)