Query 023427
Match_columns 282
No_of_seqs 166 out of 938
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 06:37:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.1E-55 3.8E-60 383.5 14.6 152 1-155 9-171 (174)
2 1ut7_A No apical meristem prot 100.0 2.4E-55 8.3E-60 380.6 13.1 152 2-156 12-169 (171)
3 1cmb_A Met APO-repressor; DNA- 23.8 49 0.0017 25.3 2.6 39 13-55 50-88 (104)
4 4dox_A Coat protein; all helix 16.1 57 0.0019 28.8 1.7 22 5-26 153-175 (226)
5 3nr5_A MAF1, repressor of RNA 12.7 58 0.002 27.3 0.8 32 38-69 119-154 (164)
6 1ldd_A APC2WHB, anaphase promo 11.7 1.1E+02 0.0038 22.2 2.0 27 7-34 37-64 (74)
7 2nsc_A Trigger factor, TF; cha 8.5 68 0.0023 24.4 -0.3 10 2-11 36-45 (109)
8 2c4b_A Barnase mcoeeti fusion; 8.0 3E+02 0.01 22.5 3.3 42 15-59 4-53 (143)
9 2d3o_1 Trigger factor, TF; rib 7.5 74 0.0025 24.3 -0.5 10 2-11 35-44 (112)
10 1p9y_A Trigger factor, TF; alp 7.2 86 0.0029 24.3 -0.3 10 2-11 39-48 (121)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.1e-55 Score=383.55 Aligned_cols=152 Identities=50% Similarity=1.017 Sum_probs=133.6
Q ss_pred CCCCCCCC-cceEcCChHHHHHHHHHHHHcCCCCCcceeeeccCCCCCCCCCCCccccCceeEEEEeecCCcCCCCCCCc
Q 023427 1 MTPELELP-GFRFHPTEDELLNFYLRNIVFGKKSHFDIIGFLNIYHHDPWELPGLSKIGEREWYFFVPRDRKHGSGGRPN 79 (282)
Q Consensus 1 ma~~~~lP-GfRF~PTDeELV~~YL~~ki~G~pl~~~~I~evDvY~~~PwdLp~~~~~ge~ewYFFt~r~rk~~~g~R~~ 79 (282)
|+.+++|| ||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.+..|+++||||+++++|+++|.|++
T Consensus 9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSC
T ss_pred cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCce
Confidence 35667775 99999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred eecccceeeeeCCCceEEecCCCCeEEEEEEEEEeeecCCCCCCccCEEEEEEEcCCCCC----------CCCCeEEEEE
Q 023427 80 RTTEHGFWKATGSDRKIVSLSDPKRVIGLRKTLVFYEGRAPKGHKTDWVMNEYRLPDGCP----------LPKDIVLCKI 149 (282)
Q Consensus 80 R~tg~G~Wk~tG~~k~I~~~~d~g~viG~KktL~Fy~g~~~~g~kT~WvMhEY~L~~~~~----------~~~d~VLCrI 149 (282)
|+|++||||++|+++.|.+ +|.+||+||+|+||.|+++++.||+|+||||+|.+... ..++||||||
T Consensus 89 R~t~~G~WkatG~dk~I~~---~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrv 165 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAP---RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRL 165 (174)
T ss_dssp EEETTEEEEECSCCEEECC---SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEE
T ss_pred eecCCceEccCCCCcEEee---CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEE
Confidence 9999999999999999974 36899999999999999999999999999999987421 2357999999
Q ss_pred EEcCCC
Q 023427 150 YRKATS 155 (282)
Q Consensus 150 y~k~~~ 155 (282)
|+|.+.
T Consensus 166 f~K~~~ 171 (174)
T 3ulx_A 166 YNKKNE 171 (174)
T ss_dssp EESCC-
T ss_pred EEcCCC
Confidence 999764
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.4e-55 Score=380.62 Aligned_cols=152 Identities=48% Similarity=0.949 Sum_probs=129.9
Q ss_pred CCCCCC-CcceEcCChHHHHHHHHHHHHcCCCCCcceeeeccCCCCCCCCCCCccccCceeEEEEeecCCcCCCCCCCce
Q 023427 2 TPELEL-PGFRFHPTEDELLNFYLRNIVFGKKSHFDIIGFLNIYHHDPWELPGLSKIGEREWYFFVPRDRKHGSGGRPNR 80 (282)
Q Consensus 2 a~~~~l-PGfRF~PTDeELV~~YL~~ki~G~pl~~~~I~evDvY~~~PwdLp~~~~~ge~ewYFFt~r~rk~~~g~R~~R 80 (282)
+..+.| |||||||||||||.|||++|+.|.+++.++|+++|||.+|||+||+.+..|+++||||+++++|+++|.|++|
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R 91 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNR 91 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCE
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccc
Confidence 445666 5999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred ecccceeeeeCCCceEEecCCCCeEEEEEEEEEeeecCCCCCCccCEEEEEEEcCCCC-----CCCCCeEEEEEEEcCCC
Q 023427 81 TTEHGFWKATGSDRKIVSLSDPKRVIGLRKTLVFYEGRAPKGHKTDWVMNEYRLPDGC-----PLPKDIVLCKIYRKATS 155 (282)
Q Consensus 81 ~tg~G~Wk~tG~~k~I~~~~d~g~viG~KktL~Fy~g~~~~g~kT~WvMhEY~L~~~~-----~~~~d~VLCrIy~k~~~ 155 (282)
+|++||||++|+++.|.+ ++.+||+||+|+||.|+++++.||+|+||||+|.+.. ...++|||||||+|..+
T Consensus 92 ~t~~G~Wk~tG~~k~I~~---~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 92 VAGSGYWKATGTDKIIST---EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp EETTEEEEEEEEEEEEEE---TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred cCCCCEEeccCCCceEEe---cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 999999999999999986 3599999999999999999999999999999998753 13467999999999875
Q ss_pred h
Q 023427 156 L 156 (282)
Q Consensus 156 ~ 156 (282)
.
T Consensus 169 ~ 169 (171)
T 1ut7_A 169 A 169 (171)
T ss_dssp -
T ss_pred C
Confidence 3
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=23.78 E-value=49 Score=25.29 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=32.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcceeeeccCCCCCCCCCCCcc
Q 023427 13 HPTEDELLNFYLRNIVFGKKSHFDIIGFLNIYHHDPWELPGLS 55 (282)
Q Consensus 13 ~PTDeELV~~YL~~ki~G~pl~~~~I~evDvY~~~PwdLp~~~ 55 (282)
|-|..||++.-...-..|+|||. +.|+-...|-++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 56888998887777889999986 6788889999998754
No 4
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=16.12 E-value=57 Score=28.79 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=16.8
Q ss_pred CCCC-cceEcCChHHHHHHHHHH
Q 023427 5 LELP-GFRFHPTEDELLNFYLRN 26 (282)
Q Consensus 5 ~~lP-GfRF~PTDeELV~~YL~~ 26 (282)
+.++ |..+.||++|+|.+=..+
T Consensus 153 l~P~~GLiR~PT~~E~iA~~t~K 175 (226)
T 4dox_A 153 MQPPSGLTRSPTQEERIANATNK 175 (226)
T ss_dssp CCCTTCCSSCCCHHHHHHHHTC-
T ss_pred cCCCCCCCCCCCHHHHHHHHHHH
Confidence 4455 999999999999984433
No 5
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=12.70 E-value=58 Score=27.31 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=18.2
Q ss_pred eeeccCCCCCCCC--CCCcc--ccCceeEEEEeecC
Q 023427 38 IGFLNIYHHDPWE--LPGLS--KIGEREWYFFVPRD 69 (282)
Q Consensus 38 I~evDvY~~~Pwd--Lp~~~--~~ge~ewYFFt~r~ 69 (282)
+.++|||++.|.. -|-.. ..=.-.+|||-++.
T Consensus 119 l~dC~IYsY~Pd~~~DPf~e~g~lWSfnYFFyNKkl 154 (164)
T 3nr5_A 119 LAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRL 154 (164)
T ss_dssp GGGCEEEEECCCGGGCTTCSCCCSCEEEEEEEETTT
T ss_pred ccCCeEEEEcCCCCCCCCCCCCceeeeeeeEEecCc
Confidence 4578999999983 24211 11123477776543
No 6
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=11.70 E-value=1.1e+02 Score=22.19 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=21.7
Q ss_pred CCcceEcC-ChHHHHHHHHHHHHcCCCCC
Q 023427 7 LPGFRFHP-TEDELLNFYLRNIVFGKKSH 34 (282)
Q Consensus 7 lPGfRF~P-TDeELV~~YL~~ki~G~pl~ 34 (282)
+.|+.|.. |++||-. ||..++....+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 34899999 8899887 599999887654
No 7
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=8.49 E-value=68 Score=24.39 Aligned_cols=10 Identities=50% Similarity=1.159 Sum_probs=6.3
Q ss_pred CCCCCCCcce
Q 023427 2 TPELELPGFR 11 (282)
Q Consensus 2 a~~~~lPGfR 11 (282)
|..+.+||||
T Consensus 36 ~k~~~ipGFR 45 (109)
T 2nsc_A 36 NQRVEIPGFR 45 (109)
T ss_dssp HTTCCCTTSC
T ss_pred hccCCCCCcC
Confidence 3456677776
No 8
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=7.95 E-value=3e+02 Score=22.53 Aligned_cols=42 Identities=19% Similarity=0.048 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCcceeee--ccCCCCCCCC------CCCccccCc
Q 023427 15 TEDELLNFYLRNIVFGKKSHFDIIGF--LNIYHHDPWE------LPGLSKIGE 59 (282)
Q Consensus 15 TDeELV~~YL~~ki~G~pl~~~~I~e--vDvY~~~Pwd------Lp~~~~~ge 59 (282)
|+.+-|..||.. -..||..+|.. ++--+.+|-+ +|+....|+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v~pgk~igG~ 53 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGD 53 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEEE
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhcCCCcccCCc
Confidence 445556678877 24567777764 5667788865 677765554
No 9
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=7.49 E-value=74 Score=24.30 Aligned_cols=10 Identities=40% Similarity=1.076 Sum_probs=6.5
Q ss_pred CCCCCCCcce
Q 023427 2 TPELELPGFR 11 (282)
Q Consensus 2 a~~~~lPGfR 11 (282)
|..+.+||||
T Consensus 35 ~k~~~ipGFR 44 (112)
T 2d3o_1 35 ARDVRVPGFR 44 (112)
T ss_dssp HTTSCBTTBC
T ss_pred HhhCCCCCcC
Confidence 3456677777
No 10
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=7.16 E-value=86 Score=24.32 Aligned_cols=10 Identities=20% Similarity=0.627 Sum_probs=7.4
Q ss_pred CCCCCCCcce
Q 023427 2 TPELELPGFR 11 (282)
Q Consensus 2 a~~~~lPGfR 11 (282)
|..+.+||||
T Consensus 39 ~k~v~ipGFR 48 (121)
T 1p9y_A 39 AKKVRIDGLR 48 (121)
T ss_dssp HTTCCCTTSC
T ss_pred HhhCccCCcC
Confidence 4567788888
Done!