BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023428
(282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VDH1|FBX21_MOUSE F-box only protein 21 OS=Mus musculus GN=Fbxo21 PE=2 SV=1
Length = 627
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVD 261
+ +G + HK +GY VI G DP C W+ V L G QPFY VLV+
Sbjct: 503 YSIGLVMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVE 556
>sp|O94952|FBX21_HUMAN F-box only protein 21 OS=Homo sapiens GN=FBXO21 PE=2 SV=2
Length = 628
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVD 261
+ +G + HK +GY VI G DP C W+ V L G QPFY VLV+
Sbjct: 503 YSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVE 556
>sp|Q5R5S1|FBX21_PONAB F-box only protein 21 OS=Pongo abelii GN=FBXO21 PE=2 SV=1
Length = 621
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVD 261
+ +G + HK +GY VI G DP C W+ V L G QPFY VLV+
Sbjct: 496 YSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVE 549
>sp|Q6D6C5|HSPQ_ERWCT Heat shock protein HspQ OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=hspQ PE=3 SV=1
Length = 102
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDP-VCCESSSWMEIAQVEKLQQGPSQPFYQVLVD 261
F LGQ++ HK+ G+ VI +DP E+ +W EI+ + + S+P+Y V+++
Sbjct: 6 FGLGQQIRHKLLGFPGVIIDIDPEYSLETPTWEEISGNDTPR---SEPWYHVVME 57
>sp|C6DKX0|HSPQ_PECCP Heat shock protein HspQ OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=hspQ PE=3 SV=1
Length = 102
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDP-VCCESSSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ++ HK+ G+ V+ +DP E+ +W EI+ + + S+P+Y V+++
Sbjct: 6 FGIGQQIRHKLLGFPGVVIDIDPEYSLETPTWEEISGNDTPR---SEPWYHVVME 57
>sp|Q8D251|HSPQ_WIGBR Heat shock protein HspQ OS=Wigglesworthia glossinidia brevipalpis
GN=hspQ PE=3 SV=2
Length = 105
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDP-VCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADP 266
F +GQ+V HK+ GY VI +DP E S EI+ + L++ P +Y V+ D P
Sbjct: 6 FGIGQQVRHKLLGYLGVIIDVDPEYSLEKPSLEEISADDSLRRSPW--YYVVMEDEDGKP 63
>sp|Q492P5|HSPQ_BLOPB Heat shock protein HspQ OS=Blochmannia pennsylvanicus (strain BPEN)
GN=hspQ PE=3 SV=1
Length = 105
Score = 38.1 bits (87), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDP-VCCESSSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V HK+ GY VI +DP E + EI + + L++ P+Y V+++
Sbjct: 6 FGIGQQVRHKLLGYLGVIIDIDPEYSLEKPTLDEITKNDTLRKS---PWYHVVME 57
>sp|Q1LT59|HSPQ_BAUCH Heat shock protein HspQ OS=Baumannia cicadellinicola subsp.
Homalodisca coagulata GN=hspQ PE=3 SV=1
Length = 105
Score = 37.7 bits (86), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWME-IAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V HK+FGY VI +DP +++ IA + L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHKLFGYLGVIIDVDPEYSLDKPYIDKIAADDSLR---TAPWYHVVME 57
>sp|Q7VR10|HSPQ_BLOFL Heat shock protein HspQ OS=Blochmannia floridanus GN=hspQ PE=3 SV=1
Length = 105
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDP-VCCESSSWMEIAQVEKLQQGPSQPFYQVLVD 261
F++GQ+V HK+ GY V+ +DP E + E+ + + L++ P+Y V+++
Sbjct: 6 FKIGQQVRHKLLGYLGVVIDIDPEYSLEKPTLDEVTKNDSLRKF---PWYHVVME 57
>sp|Q2NU66|HSPQ_SODGM Heat shock protein HspQ OS=Sodalis glossinidius (strain morsitans)
GN=hspQ PE=3 SV=1
Length = 105
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDP-VCCESSSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V HK+ GY VI +DP E S +IA + L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHKLLGYLGVIIDVDPEYSLEKPSLDDIAADDSLR---TAPWYHVVME 57
>sp|P47319|UVRB_MYCGE UvrABC system protein B OS=Mycoplasma genitalium (strain ATCC 33530
/ G-37 / NCTC 10195) GN=uvrB PE=3 SV=1
Length = 656
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 145 LSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190
L +KS A+ A I +L +++KA ++NY LA ++RD I +LE E
Sbjct: 604 LKAKSNAEKNAALIKQLTKEMKKAAANQNYELAIEIRDSIFELEKE 649
>sp|P75558|UVRB_MYCPN UvrABC system protein B OS=Mycoplasma pneumoniae (strain ATCC 29342
/ M129) GN=uvrB PE=3 SV=1
Length = 657
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 109 VQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKA 168
+Q A N + + ++ +T L L +KS Q KA I +L ++++A
Sbjct: 578 IQMAYNEQHHKTPMTVQKPIT---------LNQPIKLKTKSSEQQKAALIKQLTKEMKQA 628
Query: 169 IDSENYALAADLRDQICKLEAE 190
++NY LA ++RD I +LE +
Sbjct: 629 AANQNYELAIEIRDSIFELEKQ 650
>sp|Q3Z3F4|HSPQ_SHISS Heat shock protein HspQ OS=Shigella sonnei (strain Ss046) GN=hspQ
PE=3 SV=2
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|P0AB23|HSPQ_SHIFL Heat shock protein HspQ OS=Shigella flexneri GN=hspQ PE=3 SV=2
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|Q0T668|HSPQ_SHIF8 Heat shock protein HspQ OS=Shigella flexneri serotype 5b (strain
8401) GN=hspQ PE=3 SV=2
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|Q31YM9|HSPQ_SHIBS Heat shock protein HspQ OS=Shigella boydii serotype 4 (strain
Sb227) GN=hspQ PE=3 SV=2
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|B2TTS8|HSPQ_SHIB3 Heat shock protein HspQ OS=Shigella boydii serotype 18 (strain CDC
3083-94 / BS512) GN=hspQ PE=3 SV=1
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|Q1RDP6|HSPQ_ECOUT Heat shock protein HspQ OS=Escherichia coli (strain UTI89 / UPEC)
GN=hspQ PE=3 SV=2
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|B1LJ31|HSPQ_ECOSM Heat shock protein HspQ OS=Escherichia coli (strain SMS-3-5 /
SECEC) GN=hspQ PE=3 SV=1
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|B6I941|HSPQ_ECOSE Heat shock protein HspQ OS=Escherichia coli (strain SE11) GN=hspQ
PE=3 SV=1
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|B7N3C9|HSPQ_ECOLU Heat shock protein HspQ OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=hspQ PE=3 SV=1
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|P0AB20|HSPQ_ECOLI Heat shock protein HspQ OS=Escherichia coli (strain K12) GN=hspQ
PE=1 SV=2
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|B1IVW6|HSPQ_ECOLC Heat shock protein HspQ OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=hspQ PE=3 SV=1
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|P0AB21|HSPQ_ECOL6 Heat shock protein HspQ OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=hspQ PE=3 SV=2
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|Q0TJ94|HSPQ_ECOL5 Heat shock protein HspQ OS=Escherichia coli O6:K15:H31 (strain 536
/ UPEC) GN=hspQ PE=3 SV=2
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|A1A9N5|HSPQ_ECOK1 Heat shock protein HspQ OS=Escherichia coli O1:K1 / APEC GN=hspQ
PE=3 SV=2
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|B1X8S0|HSPQ_ECODH Heat shock protein HspQ OS=Escherichia coli (strain K12 / DH10B)
GN=hspQ PE=3 SV=1
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|C4ZQ92|HSPQ_ECOBW Heat shock protein HspQ OS=Escherichia coli (strain K12 / MC4100 /
BW2952) GN=hspQ PE=3 SV=1
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|B7M895|HSPQ_ECO8A Heat shock protein HspQ OS=Escherichia coli O8 (strain IAI1)
GN=hspQ PE=3 SV=1
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|B7MS77|HSPQ_ECO81 Heat shock protein HspQ OS=Escherichia coli O81 (strain ED1a)
GN=hspQ PE=3 SV=1
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|B7NLF0|HSPQ_ECO7I Heat shock protein HspQ OS=Escherichia coli O7:K1 (strain IAI39 /
ExPEC) GN=hspQ PE=3 SV=1
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|B5YT97|HSPQ_ECO5E Heat shock protein HspQ OS=Escherichia coli O157:H7 (strain EC4115
/ EHEC) GN=hspQ PE=3 SV=1
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|P0AB22|HSPQ_ECO57 Heat shock protein HspQ OS=Escherichia coli O157:H7 GN=hspQ PE=3
SV=2
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|B7LE66|HSPQ_ECO55 Heat shock protein HspQ OS=Escherichia coli (strain 55989 / EAEC)
GN=hspQ PE=3 SV=1
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|B7MIC0|HSPQ_ECO45 Heat shock protein HspQ OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=hspQ PE=3 SV=1
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|B7UN45|HSPQ_ECO27 Heat shock protein HspQ OS=Escherichia coli O127:H6 (strain
E2348/69 / EPEC) GN=hspQ PE=3 SV=1
Length = 105
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|A1JMW1|HSPQ_YERE8 Heat shock protein HspQ OS=Yersinia enterocolitica serotype O:8 /
biotype 1B (strain 8081) GN=hspQ PE=3 SV=1
Length = 105
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDP-VCCESSSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H++ GY V+ +DP E + E+A + L+ P+Y V+++
Sbjct: 6 FGIGQQVRHRLHGYLGVVIDIDPEYSLEPPAPDEVANNDTLRLS---PWYHVVIE 57
>sp|Q32HU0|HSPQ_SHIDS Heat shock protein HspQ OS=Shigella dysenteriae serotype 1 (strain
Sd197) GN=hspQ PE=3 SV=2
Length = 105
Score = 35.0 bits (79), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME 57
>sp|B2VDG6|HSPQ_ERWT9 Heat shock protein HspQ OS=Erwinia tasmaniensis (strain DSM 17950 /
Et1/99) GN=hspQ PE=3 SV=1
Length = 105
Score = 35.0 bits (79), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVD 261
F LGQ+V H+++G+ VI +DP + + ++ A + +G P+Y V+++
Sbjct: 6 FGLGQQVRHQLYGFLGVIVDVDPEYSLADTEIDDAATSETLRG--APWYHVVME 57
>sp|B7LNX6|HSPQ_ESCF3 Heat shock protein HspQ OS=Escherichia fergusonii (strain ATCC
35469 / DSM 13698 / CDC 0568-73) GN=hspQ PE=3 SV=1
Length = 105
Score = 34.7 bits (78), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPV-CCESSSWMEIAQVEKLQQGPSQPFYQVLVD 261
F +GQ+V H + GY V+ +DPV S E+A ++L+ + P+Y V+++
Sbjct: 6 FGIGQQVRHSLLGYLGVVVDIDPVYSLAEPSPDELAVNDELR---AAPWYHVVME 57
>sp|A8GCM7|HSPQ_SERP5 Heat shock protein HspQ OS=Serratia proteamaculans (strain 568)
GN=hspQ PE=3 SV=1
Length = 105
Score = 34.7 bits (78), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDP-VCCESSSWMEIAQVEKLQQGP----------SQPFY 256
F +GQ+V HK+ GY V+ +DP E EIA L+ P QP +
Sbjct: 6 FGIGQQVRHKLLGYLGVVIDIDPEYSMEQPKADEIAANTDLRFAPWYHVVMEDEEGQPVH 65
Query: 257 QVLVDVHADPNILVAYGNCISLD 279
L + D A+ SLD
Sbjct: 66 TYLAEAQLDGEAQEAHPEQPSLD 88
>sp|O31673|CLPE_BACSU ATP-dependent Clp protease ATP-binding subunit ClpE OS=Bacillus
subtilis (strain 168) GN=clpE PE=1 SV=1
Length = 699
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 152 QDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASA-TALAFE 202
+D A + + A+ KA++ ENY LAA LRD+ LE + ++SA TA+ E
Sbjct: 322 EDAAERLTAIEAEKTKALEEENYELAAKLRDEELALEKKLNSSSAHTAVTVE 373
>sp|A3PBT3|GLO2_PROM0 Hydroxyacylglutathione hydrolase OS=Prochlorococcus marinus (strain
MIT 9301) GN=gloB PE=3 SV=2
Length = 246
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 73 LFKGGSDRGLD-------ASSERSESANEDILFFFFQLDLATRVQCALNMEEYDIAQQLR 125
LF GG R + +S ER +S +D L + + + ALN++ D Q L+
Sbjct: 139 LFSGGCGRIFEGTYQQMYSSLERIKSLPKDTLIYCAHEYTKSNILWALNLKPKD--QDLK 196
Query: 126 NKLTEVEEEIS 136
NKL+EVE+++S
Sbjct: 197 NKLSEVEKKLS 207
>sp|Q15650|TRIP4_HUMAN Activating signal cointegrator 1 OS=Homo sapiens GN=TRIP4 PE=1 SV=4
Length = 581
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 137 RQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASA 196
++L K GL + +DK L R + ID E+ A+D + KLE E+L
Sbjct: 251 QELRIKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKLERETLQKRE 310
Query: 197 TALAFENARFAFRLGQKVNHKIFGYR 222
L R A RL +KV G +
Sbjct: 311 EEL--RELRHASRLSKKVTIDFAGRK 334
>sp|P70298|CUX2_MOUSE Homeobox protein cut-like 2 OS=Mus musculus GN=Cux2 PE=2 SV=2
Length = 1426
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 101 FQLDLATRVQCALNMEEYDI------AQQLRNKLTEVEEEISRQL-EAKRGLSSKSEAQD 153
F L R++ AL ++ +I AQQLR+ L E+EE + Q+ + +R L++KSEA +
Sbjct: 228 FALCSGPRLEAALASKDREILRLLKDAQQLRHSLQELEEVSANQIADLERQLAAKSEAIE 287
Query: 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKL 187
K + +AD ++ + A L C L
Sbjct: 288 KLQEKLEAQADYEEIKTELSILRAMKLASSTCSL 321
>sp|C0MBD7|UVRB_STRE4 UvrABC system protein B OS=Streptococcus equi subsp. equi (strain
4047) GN=uvrB PE=3 SV=1
Length = 663
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 109 VQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLS-------SKSEAQDKALSIIRL 161
+Q A N E I Q ++ + ++ ISR +EAK + ++SE Q+ +I +L
Sbjct: 578 IQMAYNEEHGIIPQTIKKDIRDLIS-ISRAVEAKATEAETNYESMTRSERQE---AIKQL 633
Query: 162 RADLQKAIDSENYALAADLRDQICKLEA 189
+ ++Q+A + ++ LAA LRD I +L+A
Sbjct: 634 QKNMQEAAELLDFELAAQLRDLILELKA 661
>sp|B4U3P4|UVRB_STREM UvrABC system protein B OS=Streptococcus equi subsp. zooepidemicus
(strain MGCS10565) GN=uvrB PE=3 SV=1
Length = 663
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 109 VQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLS-------SKSEAQDKALSIIRL 161
+Q A N E I Q ++ + ++ ISR +EAK + ++SE Q+ +I +L
Sbjct: 578 IQMAYNEEHGIIPQTIKKDIRDLIS-ISRAVEAKATEAETNYESMTRSERQE---AIKQL 633
Query: 162 RADLQKAIDSENYALAADLRDQICKLEA 189
+ ++Q+A + ++ LAA LRD I +L+A
Sbjct: 634 QKNMQEAAELLDFELAAQLRDLILELKA 661
>sp|C0MDC6|UVRB_STRS7 UvrABC system protein B OS=Streptococcus equi subsp. zooepidemicus
(strain H70) GN=uvrB PE=3 SV=1
Length = 663
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 109 VQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLS-------SKSEAQDKALSIIRL 161
+Q A N E I Q ++ + ++ ISR +EAK + ++SE Q+ +I +L
Sbjct: 578 IQMAYNEEHGIIPQTIKKDIRDLIS-ISRAVEAKATEAETNYESMTRSERQE---AIKQL 633
Query: 162 RADLQKAIDSENYALAADLRDQICKLEA 189
+ ++Q+A + ++ LAA LRD I +L+A
Sbjct: 634 QKNMQEAAELLDFELAAQLRDLILELKA 661
>sp|C1CR65|UVRB_STRZT UvrABC system protein B OS=Streptococcus pneumoniae (strain
Taiwan19F-14) GN=uvrB PE=3 SV=1
Length = 662
Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 108 RVQCALNMEEYDIAQQLRNKLTE---VEEEISRQLEAKRGLSSKSEAQDKALSIIRLRAD 164
++Q A N E + Q ++ ++ + V + +S++ + + ++S ++ + K L + +L
Sbjct: 577 KIQMAYNEEHGIVPQTIKKEIRDLIAVTKAVSKEEDKEVDINSLNKQERKEL-VKKLEKQ 635
Query: 165 LQKAIDSENYALAADLRDQICKLEA 189
+Q+A++ ++ LAA +RD + +++A
Sbjct: 636 MQEAVEVLDFELAAQIRDMMLEVKA 660
>sp|Q5UYC8|UVRB_HALMA UvrABC system protein B OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=uvrB PE=3
SV=1
Length = 686
Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 144 GLSSK--SEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190
G+SS S+A + I +L +Q+A D+ + LAAD+RD+I +L E
Sbjct: 619 GISSDGASDADEATRQIEQLEERMQEAADNLEFELAADIRDRIRELREE 667
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,181,415
Number of Sequences: 539616
Number of extensions: 3532651
Number of successful extensions: 11347
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 11286
Number of HSP's gapped (non-prelim): 201
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)