Query 023428
Match_columns 282
No_of_seqs 222 out of 520
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 06:38:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vbv_A Hypothetical protein B0 99.9 1.1E-27 3.9E-32 193.6 5.1 74 205-281 3-76 (105)
2 1e52_A Excinuclease ABC subuni 97.9 1.4E-05 4.7E-10 59.4 4.6 39 153-191 21-59 (63)
3 2d7d_A Uvrabc system protein B 96.1 0.0031 1E-07 63.4 4.0 38 153-190 623-660 (661)
4 1c4o_A DNA nucleotide excision 95.4 0.0027 9.2E-08 63.8 0.0 39 153-191 608-646 (664)
5 3pxg_A Negative regulator of g 81.9 3.6 0.00012 39.1 7.8 44 150-193 395-438 (468)
6 3he5_B Synzip2; heterodimeric 76.7 8.8 0.0003 26.7 6.3 27 157-191 21-47 (52)
7 3lay_A Zinc resistance-associa 61.9 30 0.001 29.7 7.9 39 154-192 90-130 (175)
8 1g6u_A Domain swapped dimer; d 57.0 15 0.00052 25.2 4.1 33 160-193 4-38 (48)
9 2lf0_A Uncharacterized protein 56.5 21 0.00071 29.5 5.7 45 148-192 9-53 (123)
10 2equ_A PHD finger protein 20-l 53.5 26 0.00089 26.0 5.4 54 202-282 4-60 (74)
11 4a4z_A Antiviral helicase SKI2 49.7 24 0.00081 37.2 6.3 73 154-229 552-633 (997)
12 1mhn_A SurviVal motor neuron p 47.1 45 0.0015 23.0 5.6 51 207-282 3-57 (59)
13 3ghg_A Fibrinogen alpha chain; 47.0 64 0.0022 32.6 8.5 13 123-135 114-126 (562)
14 2pih_A Protein YMCA; regulate 46.6 55 0.0019 26.9 6.9 18 115-132 7-24 (151)
15 3sja_C Golgi to ER traffic pro 44.0 66 0.0022 23.8 6.1 43 152-194 9-51 (65)
16 1ez3_A Syntaxin-1A; three heli 43.7 43 0.0015 25.8 5.6 70 116-192 9-78 (127)
17 3sjb_C Golgi to ER traffic pro 41.8 52 0.0018 25.9 5.6 45 149-193 23-67 (93)
18 3vlc_E Golgi to ER traffic pro 41.0 55 0.0019 25.8 5.6 47 147-193 28-74 (94)
19 2dig_A Lamin-B receptor; tudor 39.4 78 0.0027 23.6 5.9 55 202-282 7-65 (68)
20 3mlq_E Transcription-repair co 39.3 14 0.00046 27.2 1.8 53 207-280 2-54 (71)
21 2fzt_A Hypothetical protein TM 38.6 34 0.0012 26.1 4.0 29 158-186 4-32 (79)
22 1pjr_A PCRA; DNA repair, DNA r 35.2 8 0.00027 38.8 0.0 24 206-230 671-694 (724)
23 2k48_A Nucleoprotein; viral pr 35.1 1.6E+02 0.0054 23.7 7.5 19 175-193 82-100 (107)
24 3hht_B NitrIle hydratase beta 34.7 53 0.0018 29.4 5.3 56 202-263 136-204 (229)
25 3r8n_P 30S ribosomal protein S 34.1 18 0.00062 27.7 1.8 12 251-262 12-23 (82)
26 3m9b_A Proteasome-associated A 33.9 44 0.0015 30.5 4.6 50 157-215 55-106 (251)
27 3pxi_A Negative regulator of g 31.6 51 0.0017 33.0 5.1 41 152-192 397-437 (758)
28 4fm4_B NitrIle hydratase beta 30.1 14 0.00049 32.5 0.8 53 205-263 116-181 (206)
29 1fxk_A Prefoldin; archaeal pro 30.1 1.7E+02 0.0058 21.7 7.1 16 202-217 46-61 (107)
30 1s94_A S-syntaxin; three helix 29.7 94 0.0032 25.6 5.7 70 116-192 40-109 (180)
31 3uo3_A J-type CO-chaperone JAC 28.7 72 0.0025 27.0 4.9 37 153-189 129-165 (181)
32 3qyh_B CO-type nitrIle hydrata 27.6 44 0.0015 29.7 3.5 55 202-262 125-192 (219)
33 2p06_A Hypothetical protein AF 27.4 1.9E+02 0.0065 22.7 6.7 22 162-186 69-90 (114)
34 3v1a_A Computational design, M 27.1 1.4E+02 0.0049 20.7 5.3 37 156-192 8-44 (48)
35 4a4f_A SurviVal of motor neuro 25.6 1.3E+02 0.0045 21.0 5.1 55 202-281 3-61 (64)
36 2zzd_A Thiocyanate hydrolase s 25.6 65 0.0022 26.5 3.9 57 201-263 30-99 (126)
37 3a1g_A RNA-directed RNA polyme 25.4 1.5E+02 0.0051 22.7 5.5 47 144-190 33-79 (80)
38 3pys_P 30S ribosomal protein S 25.1 18 0.00061 27.8 0.4 11 251-261 12-22 (83)
39 3fx7_A Putative uncharacterize 24.9 2.5E+02 0.0085 22.0 9.0 76 112-190 8-85 (94)
40 4fi5_A Nucleoprotein; structur 24.7 2.8E+02 0.0096 22.5 7.5 18 175-192 69-86 (113)
41 1f5n_A Interferon-induced guan 24.4 1.4E+02 0.0049 29.8 6.9 39 152-190 543-582 (592)
42 2zqm_A Prefoldin beta subunit 23.5 2.4E+02 0.0081 21.2 7.3 15 203-217 52-66 (117)
43 1ed7_A Chitinase A1, (CHBD-CHI 22.6 16 0.00054 24.5 -0.3 28 205-232 5-37 (45)
44 2d9t_A Tudor domain-containing 22.3 1.8E+02 0.0061 21.2 5.5 26 204-229 6-35 (78)
45 1ez3_A Syntaxin-1A; three heli 20.7 2.8E+02 0.0096 21.0 8.6 62 119-185 61-123 (127)
46 3bn0_A 30S ribosomal protein S 20.3 29 0.001 28.1 0.8 12 251-262 13-24 (112)
47 1ugp_B NitrIle hydratase beta 20.1 74 0.0025 28.4 3.5 57 201-263 132-201 (226)
No 1
>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} SCOP: b.34.17.1
Probab=99.94 E-value=1.1e-27 Score=193.63 Aligned_cols=74 Identities=24% Similarity=0.394 Sum_probs=50.0
Q ss_pred ccccccCceEEeeecCeeEEEEcccccccCChhhHHhhhhcccCCCCCCCcEEEEEecCCCCCceeEEeeCCCcccC
Q 023428 205 RFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYGNCISLDPT 281 (282)
Q Consensus 205 ~vkFrIGQVvrHRryGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~gr~QPFY~VLVd~rD~~~~~~~YVAEENLe~~ 281 (282)
.++|+|||||+||+|||+|||+||||.|+++++|+..+..+ .++++|||||||++++| +....+||||+||+++
T Consensus 3 ~~kf~IGqvvrHr~~gyrGVI~d~Dp~~~~~eew~~~~~~~--~~~~~QPfYhVL~e~~~-~~~~~~YVaEenL~~~ 76 (105)
T 1vbv_A 3 ASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVN--DELRAAPWYHVVMEDDN-GLPVHTYLAEAQLSSE 76 (105)
T ss_dssp CCSSCTTCEEEETTTCCEEEEEEEECC--------------------CCCEEEEEEECSS-CCEEEEEEEGGGEEEC
T ss_pred cceecCCCEEEecccCCCEEEEeECcccCCCHHHHHhcccc--CccCCCCceEEEEeCCC-CceeeeEEcHHhcccc
Confidence 57899999999999999999999999999999999999766 46899999999999764 3345599999999864
No 2
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=97.86 E-value=1.4e-05 Score=59.37 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhhchhcHHHHHHHHHHHhhHHHhH
Q 023428 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (282)
Q Consensus 153 d~a~qL~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~Le~e~ 191 (282)
+....|..|+.+|++|.+..+||+||++||+|+.|+.++
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~l 59 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 455668899999999999999999999999999998864
No 3
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.15 E-value=0.0031 Score=63.39 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhchhcHHHHHHHHHHHhhHHHh
Q 023428 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190 (282)
Q Consensus 153 d~a~qL~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~Le~e 190 (282)
+....|.+|+.+|++|.++++||+||++||+|++|+.+
T Consensus 623 ~~~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~ 660 (661)
T 2d7d_A 623 ERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 660 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence 45566888999999999999999999999999999864
No 4
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.38 E-value=0.0027 Score=63.84 Aligned_cols=39 Identities=33% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhchhcHHHHHHHHHHHhhHHHhH
Q 023428 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (282)
Q Consensus 153 d~a~qL~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~Le~e~ 191 (282)
+....|.+|+.+|++|.++++||+||++||+|++|++++
T Consensus 608 ~~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~~ 646 (664)
T 1c4o_A 608 DLRERIAELELAMWQAAEALDFERAARLRDEIRALEARL 646 (664)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 345567889999999999999999999999999999875
No 5
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=81.94 E-value=3.6 Score=39.14 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhchhcHHHHHHHHHHHhhHHHhHhH
Q 023428 150 EAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA 193 (282)
Q Consensus 150 ea~d~a~qL~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~Le~e~~a 193 (282)
+-.+...+|.+++.+...++..++|++|+++++++.+|++++..
T Consensus 395 ~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~ 438 (468)
T 3pxg_A 395 NLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVED 438 (468)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 33456677888999999999999999999999999999998873
No 6
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=76.68 E-value=8.8 Score=26.73 Aligned_cols=27 Identities=44% Similarity=0.646 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhchhcHHHHHHHHHHHhhHHHhH
Q 023428 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (282)
Q Consensus 157 qL~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~Le~e~ 191 (282)
||++..+.|.+.| |.|||+|..||.+.
T Consensus 21 qlerdeqnlekii--------anlrdeiarlenev 47 (52)
T 3he5_B 21 QLERDEQNLEKII--------ANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHH--------HHHHHHHHHHHHHH
Confidence 3444444555444 89999999999764
No 7
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=61.93 E-value=30 Score=29.70 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhhchhcH--HHHHHHHHHHhhHHHhHh
Q 023428 154 KALSIIRLRADLQKAIDSENY--ALAADLRDQICKLEAESL 192 (282)
Q Consensus 154 ~a~qL~~Lk~~Lq~AIe~Eey--E~AA~lRD~Ik~Le~e~~ 192 (282)
...+|...+.+|+..+..+.+ +++.++.++|.+|+.++.
T Consensus 90 Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 90 LRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999988877 577788888888888876
No 8
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=56.99 E-value=15 Score=25.18 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=23.9
Q ss_pred HHHHHHHHhhchhcH--HHHHHHHHHHhhHHHhHhH
Q 023428 160 RLRADLQKAIDSENY--ALAADLRDQICKLEAESLA 193 (282)
Q Consensus 160 ~Lk~~Lq~AIe~Eey--E~AA~lRD~Ik~Le~e~~a 193 (282)
.||.+|| |+..|.| |+.|.+-.++..||+++.|
T Consensus 4 alkselq-alkkegfspeelaaleselqalekklaa 38 (48)
T 1g6u_A 4 ALKSELQ-ALKKEGFSPEELAALESELQALEKKLAA 38 (48)
T ss_dssp HHHHHHH-HHHHTTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4555664 4567776 7888889999999887663
No 9
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=56.54 E-value=21 Score=29.47 Aligned_cols=45 Identities=22% Similarity=0.127 Sum_probs=39.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhhchhcHHHHHHHHHHHhhHHHhHh
Q 023428 148 KSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (282)
Q Consensus 148 ~~ea~d~a~qL~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~Le~e~~ 192 (282)
+.|-.....+|..++.+|..|+...|-+..++..++|..|.++|.
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~ 53 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIA 53 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 345566777888899999999999999999999999999999887
No 10
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.49 E-value=26 Score=26.03 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=35.6
Q ss_pred cccccccccCceEEeeecC---eeEEEEcccccccCChhhHHhhhhcccCCCCCCCcEEEEEecCCCCCceeEEeeCCCc
Q 023428 202 ENARFAFRLGQKVNHKIFG---YRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYGNCISL 278 (282)
Q Consensus 202 ~~~~vkFrIGQVvrHRryG---YrGVIvGWD~~c~a~eeW~~~~~v~~l~~gr~QPFY~VLVd~rD~~~~~~~YVAEENL 278 (282)
..+...|++|+.+.=+... |+|.|...+.. .-|.|+.++. ...-|+..+|
T Consensus 4 ~~~~~~~kvGd~clA~wsDg~~Y~A~I~~v~~~----------------------~~~~V~f~Dy-----n~e~v~~~~l 56 (74)
T 2equ_A 4 GSSGFDFKAGEEVLARWTDCRYYPAKIEAINKE----------------------GTFTVQFYDG-----VIRCLKRMHI 56 (74)
T ss_dssp CCSCCCCCTTCEEEEECSSSSEEEEEEEEESTT----------------------SSEEEEETTS-----CEEEECGGGE
T ss_pred ccCCCCCCCCCEEEEECCCCCEEEEEEEEECCC----------------------CEEEEEEecC-----CeEEecHHHC
Confidence 3446689999999876544 77888775430 2388887763 3455666666
Q ss_pred ccCC
Q 023428 279 DPTP 282 (282)
Q Consensus 279 e~~p 282 (282)
.|.|
T Consensus 57 rplp 60 (74)
T 2equ_A 57 KAMP 60 (74)
T ss_dssp ECCC
T ss_pred eeCC
Confidence 6654
No 11
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=49.73 E-value=24 Score=37.24 Aligned_cols=73 Identities=10% Similarity=0.016 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhhch------hcHHHHHHHHHHHhhHHHhHhHhhHhhhhccccccccccCceEEeeec--Ce-eEE
Q 023428 154 KALSIIRLRADLQKAIDS------ENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIF--GY-RAV 224 (282)
Q Consensus 154 ~a~qL~~Lk~~Lq~AIe~------EeyE~AA~lRD~Ik~Le~e~~aasa~~~~~~~~~vkFrIGQVvrHRry--GY-rGV 224 (282)
...+|..+.+++..+-.. +++++++++|++|++++.++... ...+......+..|.||.-+.- ++ .||
T Consensus 552 ~~~~l~~l~~~~~~~~~~~c~~c~~~~~~~~~~r~~~~~~~~~~~~~---~~~~~~~~~~l~~gr~v~~~~~~~~~~~~~ 628 (997)
T 4a4z_A 552 HEKQIKVLQEELQTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQE---MVKSPSILHILKEGRLVAFRDPNDCLKLGF 628 (997)
T ss_dssp HHHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHH---HTTSTTHHHHTCTTEEEEEECTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHH---HhcCHhHHhhCCCCCEEEEecCCCCeeEEE
Confidence 344555566666543222 47899999999999999876421 1223333346899999965432 33 588
Q ss_pred EEccc
Q 023428 225 ICGMD 229 (282)
Q Consensus 225 IvGWD 229 (282)
|+..+
T Consensus 629 v~~~~ 633 (997)
T 4a4z_A 629 VFKVS 633 (997)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 88654
No 12
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=47.14 E-value=45 Score=22.99 Aligned_cols=51 Identities=18% Similarity=0.056 Sum_probs=33.9
Q ss_pred ccccCceEEeeecC----eeEEEEcccccccCChhhHHhhhhcccCCCCCCCcEEEEEecCCCCCceeEEeeCCCcccCC
Q 023428 207 AFRLGQKVNHKIFG----YRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYGNCISLDPTP 282 (282)
Q Consensus 207 kFrIGQVvrHRryG----YrGVIvGWD~~c~a~eeW~~~~~v~~l~~gr~QPFY~VLVd~rD~~~~~~~YVAEENLe~~p 282 (282)
.|++|+.+.=+... ||++|.+-++. ..-|.|+..+. +...-|+-.+|.+.|
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~---------------------~~~~~V~f~DY----Gn~e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFK---------------------RETCVVVYTGY----GNREEQNLSDLLSPI 57 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETT---------------------TTEEEEEETTT----TEEEEEEGGGCBCTT
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCC---------------------CCEEEEEEEcC----CCEEEEcHHHeeCCC
Confidence 58899988766542 88999875431 13378886553 356677877777765
No 13
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.95 E-value=64 Score=32.56 Aligned_cols=13 Identities=15% Similarity=0.557 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 023428 123 QLRNKLTEVEEEI 135 (282)
Q Consensus 123 ~l~~~l~~v~~~~ 135 (282)
+||..|+.|..+|
T Consensus 114 ELRRrIqyLKekV 126 (562)
T 3ghg_A 114 DLRSRIEVLKRKV 126 (562)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 14
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=46.56 E-value=55 Score=26.93 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023428 115 MEEYDIAQQLRNKLTEVE 132 (282)
Q Consensus 115 y~~f~~a~~l~~~l~~v~ 132 (282)
.+.|+.|.+|...|.+-+
T Consensus 7 ~~I~d~A~eL~~aI~ese 24 (151)
T 2pih_A 7 KDIVQQARNLAKMISETE 24 (151)
T ss_dssp HHHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHHHHHHcCH
Confidence 355666777777666544
No 15
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=43.98 E-value=66 Score=23.75 Aligned_cols=43 Identities=16% Similarity=0.053 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhhchhcHHHHHHHHHHHhhHHHhHhHh
Q 023428 152 QDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAA 194 (282)
Q Consensus 152 ~d~a~qL~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~Le~e~~aa 194 (282)
.....++.+|+.++...=..++|.+=|+||-++..|..++++.
T Consensus 9 ~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l 51 (65)
T 3sja_C 9 LAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNL 51 (65)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678889999998888999999999999999999888743
No 16
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=43.72 E-value=43 Score=25.78 Aligned_cols=70 Identities=11% Similarity=0.209 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHhhchhcHHHHHHHHHHHhhHHHhHh
Q 023428 116 EEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (282)
Q Consensus 116 ~~f~~a~~l~~~l~~v~~~~~~~~~gK~~~~~~~ea~d~a~qL~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~Le~e~~ 192 (282)
++|+..++|+.-|..|...+.. .++--. ..+........++.+|...+ .|--..|..|+++|+.|+....
T Consensus 9 ~F~~~v~~I~~~i~~i~~~v~~--l~~~~~----~~L~~~~~~~~~~~~l~~l~-~~i~~~a~~ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 9 EFFEQVEEIRGFIDKIAENVEE--VKRKHS----AILASPNPDEKTKEELEELM-SDIKKTANKVRSKLKSIEQSIE 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHH----HHHHCSSCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHH----HHHhcCCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888887765532 222110 00000000113555665555 2223688999999999988755
No 17
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=41.81 E-value=52 Score=25.89 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhchhcHHHHHHHHHHHhhHHHhHhH
Q 023428 149 SEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA 193 (282)
Q Consensus 149 ~ea~d~a~qL~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~Le~e~~a 193 (282)
.+-.....++.+|+.++...=..++|.+=|+||-++..|..++++
T Consensus 23 ~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~ 67 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINN 67 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566778889999999998999999999999999998888764
No 18
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=40.98 E-value=55 Score=25.81 Aligned_cols=47 Identities=15% Similarity=0.036 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhchhcHHHHHHHHHHHhhHHHhHhH
Q 023428 147 SKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA 193 (282)
Q Consensus 147 ~~~ea~d~a~qL~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~Le~e~~a 193 (282)
...+-.....++.+|+.+|...=..++|.+=|+||-++..|..++++
T Consensus 28 ~~~~~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~ 74 (94)
T 3vlc_E 28 LSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINN 74 (94)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888999999999999999999999999999999888773
No 19
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=39.38 E-value=78 Score=23.63 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=37.9
Q ss_pred cccccccccCceEEeeecC----eeEEEEcccccccCChhhHHhhhhcccCCCCCCCcEEEEEecCCCCCceeEEeeCCC
Q 023428 202 ENARFAFRLGQKVNHKIFG----YRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYGNCIS 277 (282)
Q Consensus 202 ~~~~vkFrIGQVvrHRryG----YrGVIvGWD~~c~a~eeW~~~~~v~~l~~gr~QPFY~VLVd~rD~~~~~~~YVAEEN 277 (282)
..+.++|.+|+.|.-|+-| |.+-|.+-|. +.|-|.|+..++ ...=+.+..
T Consensus 7 ~mp~~~f~vgd~VmaRW~Gd~~yYparItSits---------------------~~~~Y~VkfKdg-----T~e~L~~kD 60 (68)
T 2dig_A 7 GMPSRKFADGEVVRGRWPGSSLYYEVEILSHDS---------------------TSQLYTVKYKDG-----TELELKEND 60 (68)
T ss_dssp SSCCCSSCSSCEEEEECTTTCCEEEEEEEEEET---------------------TTTEEEEECTTS-----CEEEEETTT
T ss_pred CCCceEeecCCEEEEEccCCccceEEEEEEecc---------------------CCceEEEEecCC-----CEEEechhc
Confidence 3567799999999988766 5677777651 346699998652 344456666
Q ss_pred cccCC
Q 023428 278 LDPTP 282 (282)
Q Consensus 278 Le~~p 282 (282)
|.|.|
T Consensus 61 IKp~~ 65 (68)
T 2dig_A 61 IKSGP 65 (68)
T ss_dssp EECCC
T ss_pred cccCC
Confidence 66655
No 20
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=39.29 E-value=14 Score=27.23 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=21.6
Q ss_pred ccccCceEEeeecCeeEEEEcccccccCChhhHHhhhhcccCCCCCCCcEEEEEecCCCCCceeEEeeCCCccc
Q 023428 207 AFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYGNCISLDP 280 (282)
Q Consensus 207 kFrIGQVvrHRryGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~gr~QPFY~VLVd~rD~~~~~~~YVAEENLe~ 280 (282)
.|++|+.|.|.-+| .|.|.|....-- .|..+-||.+-..+ ....|||-+|+..
T Consensus 2 ~l~~GD~VVh~~hG-iG~~~gi~~~~v---------------~g~~~ey~~l~y~~-----~~~l~VPv~~~~~ 54 (71)
T 3mlq_E 2 PHMPGDYLIHPEHG-VGQYLGLETREV---------------LGVKRDYLVLRYKG-----EGKLYLPVEQLPL 54 (71)
T ss_dssp ---------------CEEEEEEEEEEE---------------TTEEEEEEEEEETT-----TEEEEEESSSCC-
T ss_pred cCCCCCEEEECCCe-eEEEeEEEEEEe---------------CCeeEEEEEEEECC-----CCEEEEEhhhhcc
Confidence 48999999999888 466666433111 22345566665543 3589999998864
No 21
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=38.64 E-value=34 Score=26.14 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhchhcHHHHHHHHHHHhh
Q 023428 158 IIRLRADLQKAIDSENYALAADLRDQICK 186 (282)
Q Consensus 158 L~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~ 186 (282)
|..+..+..+||+.||||..-.|-++=.+
T Consensus 4 I~EIEk~ID~aIE~edyE~L~~LL~kREk 32 (79)
T 2fzt_A 4 IDEIERKIDEAIEKEDYETLLSLLNKRKE 32 (79)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45566778889999999866666555433
No 22
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=35.15 E-value=8 Score=38.81 Aligned_cols=24 Identities=17% Similarity=0.527 Sum_probs=0.0
Q ss_pred cccccCceEEeeecCeeEEEEcccc
Q 023428 206 FAFRLGQKVNHKIFGYRAVICGMDP 230 (282)
Q Consensus 206 vkFrIGQVvrHRryGYrGVIvGWD~ 230 (282)
..|++|+.|+|+.||. |+|+..+.
T Consensus 671 ~~~~~g~~v~h~~fg~-g~v~~~~~ 694 (724)
T 1pjr_A 671 GSWKVGDRANHRKWGI-GTVVSVRG 694 (724)
T ss_dssp -------------------------
T ss_pred cccccCCEeeccCCCC-ceEEEEec
Confidence 3599999999999996 99988664
No 23
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=35.06 E-value=1.6e+02 Score=23.71 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhHHHhHhH
Q 023428 175 ALAADLRDQICKLEAESLA 193 (282)
Q Consensus 175 E~AA~lRD~Ik~Le~e~~a 193 (282)
.....|+++|.+|+.++..
T Consensus 82 ~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677899999999998763
No 24
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=34.68 E-value=53 Score=29.43 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=33.4
Q ss_pred cccccccccCceEEe---------ee----cCeeEEEEcccccccCChhhHHhhhhcccCCCCCCCcEEEEEecC
Q 023428 202 ENARFAFRLGQKVNH---------KI----FGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVH 263 (282)
Q Consensus 202 ~~~~vkFrIGQVvrH---------Rr----yGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~gr~QPFY~VLVd~r 263 (282)
.....+|+|||.|+= |. -|-.|+|.-....+--++. .. .. .....||+|+|-++..
T Consensus 136 ~~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g~~~~pd~----~a-~g-~~~~p~~lY~V~F~~~ 204 (229)
T 3hht_B 136 ISASPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVYGAHVFPDD----AA-HR-KGENPQYLYRVRFEAE 204 (229)
T ss_dssp CSSCCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEEEEECCHHH----HT-TT-SCCCCEEEEEEEEEHH
T ss_pred CCCCCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEecCccCccc----cc-CC-CCCCCceeEEEEecch
Confidence 344578999999964 22 2447999765443333221 11 11 1224599999999754
No 25
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=34.13 E-value=18 Score=27.73 Aligned_cols=12 Identities=50% Similarity=0.874 Sum_probs=9.6
Q ss_pred CCCCcEEEEEec
Q 023428 251 PSQPFYQVLVDV 262 (282)
Q Consensus 251 r~QPFY~VLVd~ 262 (282)
+++|||+|.|-+
T Consensus 12 kk~PfYrIVvad 23 (82)
T 3r8n_P 12 KKRPFYQVVVAD 23 (82)
T ss_dssp TTSCCEEEEEEE
T ss_pred CCCCEEEEEEee
Confidence 579999999743
No 26
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=33.90 E-value=44 Score=30.53 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhchhcH--HHHHHHHHHHhhHHHhHhHhhHhhhhccccccccccCceEE
Q 023428 157 SIIRLRADLQKAIDSENY--ALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVN 215 (282)
Q Consensus 157 qL~~Lk~~Lq~AIe~Eey--E~AA~lRD~Ik~Le~e~~aasa~~~~~~~~~vkFrIGQVvr 215 (282)
++.+|+.+++.+-+..+| +.-..+|++|..|+++++ .. .++.+.+|.++.
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEle--rL-------~sPPL~iGtvle 106 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD--RL-------GQPPSGYGVLLA 106 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH--HH-------HSCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh-------cCCCceEEEEEE
Confidence 344566666666655554 566788999999999887 22 245567777776
No 27
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=31.57 E-value=51 Score=32.96 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhhchhcHHHHHHHHHHHhhHHHhHh
Q 023428 152 QDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (282)
Q Consensus 152 ~d~a~qL~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~Le~e~~ 192 (282)
.+...++.+++.+...++..++|+.++.++++++.++.++.
T Consensus 397 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 437 (758)
T 3pxi_A 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVE 437 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 34556677888899999999999999999999999988776
No 28
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=30.10 E-value=14 Score=32.50 Aligned_cols=53 Identities=32% Similarity=0.477 Sum_probs=30.5
Q ss_pred ccccccCceEEee-------------ecCeeEEEEcccccccCChhhHHhhhhcccCCCCCCCcEEEEEecC
Q 023428 205 RFAFRLGQKVNHK-------------IFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVH 263 (282)
Q Consensus 205 ~vkFrIGQVvrHR-------------ryGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~gr~QPFY~VLVd~r 263 (282)
..+|+|||.|+=| .-|-.|+|+--....--|+. +. .. .....||.|+|-++.+
T Consensus 116 ~~~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~g~~v~Pd~---~A--~g-~ge~p~~lY~V~F~~~ 181 (206)
T 4fm4_B 116 EGGFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGISPAYPYPDA---AA--HG-EYGFSEPTYDVCFKSK 181 (206)
T ss_dssp TTCCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEECCCEECHHH---HT--TT-CCSCEECEEEEEEEHH
T ss_pred CCCCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEecCcCCccc---cc--CC-CCCCcceeEEEEEecc
Confidence 4579999999742 22447999854433222221 11 11 1223489999998754
No 29
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=30.05 E-value=1.7e+02 Score=21.71 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=12.2
Q ss_pred cccccccccCceEEee
Q 023428 202 ENARFAFRLGQKVNHK 217 (282)
Q Consensus 202 ~~~~vkFrIGQVvrHR 217 (282)
..+.+-+.||-||.+.
T Consensus 46 ~d~~vy~~iG~vfv~~ 61 (107)
T 1fxk_A 46 DDAEVYKSSGNILIRV 61 (107)
T ss_dssp TTCCEEEEETTEEEEE
T ss_pred CCchHHHHHhHHHHhc
Confidence 3455789999999864
No 30
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=29.68 E-value=94 Score=25.59 Aligned_cols=70 Identities=13% Similarity=0.250 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHhhchhcHHHHHHHHHHHhhHHHhHh
Q 023428 116 EEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (282)
Q Consensus 116 ~~f~~a~~l~~~l~~v~~~~~~~~~gK~~~~~~~ea~d~a~qL~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~Le~e~~ 192 (282)
++|+..+.|+.-|..|...+.. ..+--........ ....++.+|...+ .+--..|..|+.+|+.|++...
T Consensus 40 ~F~~~v~~I~~~i~~i~~~v~~--l~~~~~~~L~~~~----~~~~~k~~le~l~-~~i~~~a~~ik~~Lk~l~~~~~ 109 (180)
T 1s94_A 40 EFFEQVEEIRAMIDKISDNVDA--VKKKHSDILSAPQ----TDDQMKEELEELM-TDIKRTANKVRGKLKTIELNIE 109 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC-----------CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCC----chHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888999988888866633 2222100000011 1124555665555 2233678889999999987654
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=28.68 E-value=72 Score=27.01 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhchhcHHHHHHHHHHHhhHHH
Q 023428 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEA 189 (282)
Q Consensus 153 d~a~qL~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~Le~ 189 (282)
+...++..+..+|..+++.++|+.|+.+-.+++=+..
T Consensus 129 ~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~k 165 (181)
T 3uo3_A 129 QNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYN 165 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3455667778899999999999999988888876664
No 32
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=27.62 E-value=44 Score=29.69 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=33.3
Q ss_pred cccccccccCceEEe---------ee----cCeeEEEEcccccccCChhhHHhhhhcccCCCCCCCcEEEEEec
Q 023428 202 ENARFAFRLGQKVNH---------KI----FGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDV 262 (282)
Q Consensus 202 ~~~~vkFrIGQVvrH---------Rr----yGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~gr~QPFY~VLVd~ 262 (282)
.....+|+|||.|+= |. -|-.|+|.-....+--++. .. .. .....||+|+|-++.
T Consensus 125 ~~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g~~~~pd~---~a--~g-~~~~p~~lY~V~F~~ 192 (219)
T 3qyh_B 125 EGARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDT---AA--HG-KGEHPQHVYTVSFTS 192 (219)
T ss_dssp CCSCCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEEEEECCHHH---HT--TT-SCCCCEEEEEEEEEH
T ss_pred CCCCCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEecCccCccc---cc--cC-CCCCCceeEEEEecc
Confidence 345578999999964 22 2447999665443333321 11 11 123469999999974
No 33
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=27.45 E-value=1.9e+02 Score=22.68 Aligned_cols=22 Identities=27% Similarity=0.678 Sum_probs=16.4
Q ss_pred HHHHHHhhchhcHHHHHHHHHHHhh
Q 023428 162 RADLQKAIDSENYALAADLRDQICK 186 (282)
Q Consensus 162 k~~Lq~AIe~EeyE~AA~lRD~Ik~ 186 (282)
-.+|.+||+.|+.| .|||++-.
T Consensus 69 mdelreavekedwe---nlrdelld 90 (114)
T 2p06_A 69 MDELREAVEKEDWE---NLRDELLD 90 (114)
T ss_dssp HHHHHHHHHTTCHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHH
Confidence 34788899999987 47887653
No 34
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=27.11 E-value=1.4e+02 Score=20.69 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhchhcHHHHHHHHHHHhhHHHhHh
Q 023428 156 LSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (282)
Q Consensus 156 ~qL~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~Le~e~~ 192 (282)
.|+-.++.-+++|-..-.|++.+.|..-|++|+.++.
T Consensus 8 EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 8 QQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 4556677888889888899999999999999998876
No 35
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=25.64 E-value=1.3e+02 Score=20.97 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=34.4
Q ss_pred cccccccccCceEEeeec--C--eeEEEEcccccccCChhhHHhhhhcccCCCCCCCcEEEEEecCCCCCceeEEeeCCC
Q 023428 202 ENARFAFRLGQKVNHKIF--G--YRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYGNCIS 277 (282)
Q Consensus 202 ~~~~vkFrIGQVvrHRry--G--YrGVIvGWD~~c~a~eeW~~~~~v~~l~~gr~QPFY~VLVd~rD~~~~~~~YVAEEN 277 (282)
.++...+++|+.+.=+.. | ||++|.+.+.. ..-|.|+..+. ....-|+-.+
T Consensus 3 ~~~~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~---------------------~~~~~V~fvdY----Gn~e~V~~~~ 57 (64)
T 4a4f_A 3 TQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEE---------------------NGTAAITFAGY----GNAEVTPLLN 57 (64)
T ss_dssp SCCSSCCCTTCEEEEECTTTSSEEEEEEEEEETT---------------------TTEEEEEETTT----TEEEEEEGGG
T ss_pred CCcCCCCCCCCEEEEEECCCCCEEEEEEEEEcCC---------------------CCEEEEEEEec----CCEEEEeHHH
Confidence 456678999999875543 2 78888875531 12377776543 3455566666
Q ss_pred cccC
Q 023428 278 LDPT 281 (282)
Q Consensus 278 Le~~ 281 (282)
|.|.
T Consensus 58 Lrpl 61 (64)
T 4a4f_A 58 LKPV 61 (64)
T ss_dssp EECC
T ss_pred cEeC
Confidence 6554
No 36
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=25.62 E-value=65 Score=26.55 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=34.0
Q ss_pred ccccccccccCceEEee---------e----cCeeEEEEcccccccCChhhHHhhhhcccCCCCCCCcEEEEEecC
Q 023428 201 FENARFAFRLGQKVNHK---------I----FGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVH 263 (282)
Q Consensus 201 ~~~~~vkFrIGQVvrHR---------r----yGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~gr~QPFY~VLVd~r 263 (282)
......+|+||+.|+=| . -|-.|+|.-.-..+--++. .. .. .....||+|+|-++..
T Consensus 30 ~~~~~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~G~~v~Pd~----~A-~G-~ge~p~~lY~VrF~~~ 99 (126)
T 2zzd_A 30 GMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAED----EA-FG-NEENVEWFYSIVFAQK 99 (126)
T ss_dssp TTTCSCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEEEEECCHHH----HT-TT-CCSCCEEEEEEEEEHH
T ss_pred CCCCCCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEecccCCcch----hc-cC-CCCCcceeEEEEecch
Confidence 34456789999999642 2 3457999654433333322 11 11 1334699999999753
No 37
>3a1g_A RNA-directed RNA polymerase catalytic subunit; influenza virus, RNA polymerase, nucleotide-binding, nucleotidyltransferase, nucleus, RNA replication; 1.70A {Influenza a virus} PDB: 2ztt_A
Probab=25.40 E-value=1.5e+02 Score=22.65 Aligned_cols=47 Identities=21% Similarity=0.125 Sum_probs=29.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhchhcHHHHHHHHHHHhhHHHh
Q 023428 144 GLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190 (282)
Q Consensus 144 ~~~~~~ea~d~a~qL~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~Le~e 190 (282)
|.++..|+......+..-=.----+|++++||++-.+-.+|+.+..+
T Consensus 33 G~~Sm~EAm~~rlr~dAr~d~esGri~k~efeeim~i~~~i~~~r~~ 79 (80)
T 3a1g_A 33 GISSMVEAMVSRARIDARIDFESGRIKKEEFTEIMKICSTIEELRRQ 79 (80)
T ss_dssp TTSBHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHHhhhhhhccccHHHHHHHHHHHHHHHHHHhc
Confidence 33566777655433322111233578999999998888888876543
No 38
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=25.09 E-value=18 Score=27.83 Aligned_cols=11 Identities=27% Similarity=0.757 Sum_probs=9.1
Q ss_pred CCCCcEEEEEe
Q 023428 251 PSQPFYQVLVD 261 (282)
Q Consensus 251 r~QPFY~VLVd 261 (282)
+++|||+|.|-
T Consensus 12 kkrPfYrIVva 22 (83)
T 3pys_P 12 KHNPHYRIVVT 22 (83)
T ss_dssp TTCCCCCCEEE
T ss_pred CCCCeEEEEEE
Confidence 56999999874
No 39
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.95 E-value=2.5e+02 Score=21.95 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=53.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchh--HHHHHHHHHHHHHHHHHhhchhcHHHHHHHHHHHhhHHH
Q 023428 112 ALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSE--AQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEA 189 (282)
Q Consensus 112 ~~~y~~f~~a~~l~~~l~~v~~~~~~~~~gK~~~~~~~e--a~d~a~qL~~Lk~~Lq~AIe~EeyE~AA~lRD~Ik~Le~ 189 (282)
|.....|. ++|+.-++++.+++...+..=...++|.. .....-.+++|...|+..++ .--+...-|+.+|+-|+.
T Consensus 8 peElr~Fa--~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e-~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 8 TEEVREFV--GHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDE-AAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHH-hhHHHhHHHHHHHHHhHH
Confidence 55566776 58888888888877654333333334543 34566677888888888875 455788889999998887
Q ss_pred h
Q 023428 190 E 190 (282)
Q Consensus 190 e 190 (282)
.
T Consensus 85 ~ 85 (94)
T 3fx7_A 85 D 85 (94)
T ss_dssp H
T ss_pred H
Confidence 5
No 40
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.69 E-value=2.8e+02 Score=22.46 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhHHHhHh
Q 023428 175 ALAADLRDQICKLEAESL 192 (282)
Q Consensus 175 E~AA~lRD~Ik~Le~e~~ 192 (282)
.....|+++|.+|+.++.
T Consensus 69 ~~Vs~lq~KiaeLKrqLA 86 (113)
T 4fi5_A 69 GVAVSIQAKIDELKRQLA 86 (113)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367789999999999876
No 41
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.35 E-value=1.4e+02 Score=29.78 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhchhcH-HHHHHHHHHHhhHHHh
Q 023428 152 QDKALSIIRLRADLQKAIDSENY-ALAADLRDQICKLEAE 190 (282)
Q Consensus 152 ~d~a~qL~~Lk~~Lq~AIe~Eey-E~AA~lRD~Ik~Le~e 190 (282)
+.....++..|.+-|+.+-.|+| ++|..+..+|..|+.+
T Consensus 543 ~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 543 LKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455566666667777777 6888889999988876
No 42
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.51 E-value=2.4e+02 Score=21.18 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=11.7
Q ss_pred ccccccccCceEEee
Q 023428 203 NARFAFRLGQKVNHK 217 (282)
Q Consensus 203 ~~~vkFrIGQVvrHR 217 (282)
...+-+.||-||.++
T Consensus 52 d~~vy~~iG~vfv~~ 66 (117)
T 2zqm_A 52 DAVVYKTVGTLIVKT 66 (117)
T ss_dssp TCCEEEEETTEEEEE
T ss_pred CcHhHHHhhHHHhhc
Confidence 445789999999864
No 43
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=22.56 E-value=16 Score=24.48 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=20.8
Q ss_pred ccccccCceEEeeecCeeEEE-----Ecccccc
Q 023428 205 RFAFRLGQKVNHKIFGYRAVI-----CGMDPVC 232 (282)
Q Consensus 205 ~vkFrIGQVvrHRryGYrGVI-----vGWD~~c 232 (282)
...|.+|++|.|.-..|+++. .||+|..
T Consensus 5 ~~~Y~~Gd~Vty~G~~Y~c~q~hts~~~w~P~~ 37 (45)
T 1ed7_A 5 NTAYTAGQLVTYNGKTYKCLQPHTSLAGWEPSN 37 (45)
T ss_dssp SEEECTTCCEEETTEEECBCSCEEECTTCSSCC
T ss_pred CceEcCCCEEEECCeEEEEEecCcCcCCcccCC
Confidence 567999999998777777665 2677643
No 44
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=22.27 E-value=1.8e+02 Score=21.19 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=18.3
Q ss_pred cccccccCceEEeeec-C---eeEEEEccc
Q 023428 204 ARFAFRLGQKVNHKIF-G---YRAVICGMD 229 (282)
Q Consensus 204 ~~vkFrIGQVvrHRry-G---YrGVIvGWD 229 (282)
+...+++|+++.=+.. . ||++|...+
T Consensus 6 ~~~~~~~G~~c~A~~s~Dg~wYRA~I~~i~ 35 (78)
T 2d9t_A 6 SGKVWKPGDECFALYWEDNKFYRAEVEALH 35 (78)
T ss_dssp CCCCCCTTCEEEEECTTTCCEEEEEEEEEC
T ss_pred CccCCCcCCEEEEEECCCCCEEEEEEEEEe
Confidence 4457899999875543 1 788888754
No 45
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=20.73 E-value=2.8e+02 Score=21.01 Aligned_cols=62 Identities=19% Similarity=0.312 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHhhchhcHH-HHHHHHHHHh
Q 023428 119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYA-LAADLRDQIC 185 (282)
Q Consensus 119 ~~a~~l~~~l~~v~~~~~~~~~gK~~~~~~~ea~d~a~qL~~Lk~~Lq~AIe~EeyE-~AA~lRD~Ik 185 (282)
..|..|+.+|..|..+..+ -+|+.| . ..+..-...+..-|+..++.++ .+|- .-...|++++
T Consensus 61 ~~a~~ik~~Lk~l~~~~~~-~~~~~~-~-s~~~Rir~~q~~~L~~kf~e~m--~~y~~~q~~yre~~k 123 (127)
T 1ez3_A 61 KTANKVRSKLKSIEQSIEQ-EEGLNR-S-SADLRIRKTQHSTLSRKFVEVM--SEYNATQSDYRERCK 123 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHTTSC-C-CHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-hcccCC-C-cHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4567899999999887744 234444 2 2233344667777888888888 5663 3334444443
No 46
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1
Probab=20.32 E-value=29 Score=28.12 Aligned_cols=12 Identities=25% Similarity=0.575 Sum_probs=9.5
Q ss_pred CCCCcEEEEEec
Q 023428 251 PSQPFYQVLVDV 262 (282)
Q Consensus 251 r~QPFY~VLVd~ 262 (282)
+++|||+|.|-+
T Consensus 13 KkrPfYrIVVaD 24 (112)
T 3bn0_A 13 KHHPIYRIVVMD 24 (112)
T ss_dssp TTEEEEEEEEEE
T ss_pred CCCCeEEEEEEe
Confidence 468999999743
No 47
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=20.11 E-value=74 Score=28.36 Aligned_cols=57 Identities=11% Similarity=0.084 Sum_probs=34.0
Q ss_pred ccccccccccCceEEe---------eec----CeeEEEEcccccccCChhhHHhhhhcccCCCCCCCcEEEEEecC
Q 023428 201 FENARFAFRLGQKVNH---------KIF----GYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVH 263 (282)
Q Consensus 201 ~~~~~vkFrIGQVvrH---------Rry----GYrGVIvGWD~~c~a~eeW~~~~~v~~l~~gr~QPFY~VLVd~r 263 (282)
......+|+||+.|+= |.= |-.|+|.-.-..+--++. .. .. .....||+|+|-++..
T Consensus 132 ~~~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~g~~~~pd~---~a--~g-~~~~p~~lY~V~F~~~ 201 (226)
T 1ugp_B 132 EVDRPPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHHGAYIYPDT---AG--NG-LGECPEHLYTVRFTAQ 201 (226)
T ss_dssp CCSSCCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEEEEECCHHH---HT--TT-SCCCCEEEEEEEEEHH
T ss_pred CCCCCCcCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEecCCCCcch---hc--cC-CCCCCceeEEEEechh
Confidence 3455678999999964 222 447999854433333322 11 11 2334689999999753
Done!