BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023429
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 64/107 (59%)
Query: 129 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEK 188
+RSPVF AM ++EMEES+ ++I+DV + + + ++YT +A +++A DLL A+K
Sbjct: 195 ARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADK 254
Query: 189 YQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLIT 235
Y ++ LK CE L S L+ +N+ A H+A QL A+ I
Sbjct: 255 YALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFIN 301
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 61/98 (62%)
Query: 129 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEK 188
+RSPVF AM ++EMEES+ ++I+DV + + + ++YT +A +++A DLL A+K
Sbjct: 46 ARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADK 105
Query: 189 YQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQL 226
Y ++ LK CE L S L+ +N+ A H+A QL
Sbjct: 106 YALERLKVMCEDALCSNLSVENAAEILILADLHSADQL 143
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 134 FKAMLDNEMEESRSGTIKISDVSY------DALRAFVNYLYTAEACLDEQLACDLLELAE 187
F +L + ESRSG +++ S D + A + Y+YT + ++LELA+
Sbjct: 79 FTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELAD 138
Query: 188 KYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEY 247
++ + LK +C +FL KL+ N V ++ AH + QL A +I N K+ + EE+
Sbjct: 139 RFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEF 198
Query: 248 REL 250
L
Sbjct: 199 YTL 201
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 134 FKAMLDNEMEESRSGTIKISDVSY------DALRAFVNYLYTAEACLDEQLACDLLELAE 187
F +L + ESRSG ++ S D + A + Y YT + ++LELA+
Sbjct: 61 FTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTGRIRVSTGSVHEVLELAD 120
Query: 188 KYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEY 247
++ + LK +C +FL KL+ N V ++ AH + QL A I N K+ + EE+
Sbjct: 121 RFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHXYTLSQLALKAADXIRRNFHKVIQDEEF 180
Query: 248 REL 250
L
Sbjct: 181 YTL 183
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 60/107 (56%)
Query: 129 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEK 188
+RSPVF A ++E EES+ ++I+DV + + ++YT +A ++ A DLL A+K
Sbjct: 55 ARSPVFSAXFEHEXEESKKNRVEINDVEPEVFKEXXCFIYTGKAPNLDKXADDLLAAADK 114
Query: 189 YQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLIT 235
Y ++ LK CE L S L+ +N+ A H+A QL A+ I
Sbjct: 115 YALERLKVXCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFIN 161
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 131 SPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQ 190
S VF A ++ E +S I I DV A + Y Y+ E L+ L A+KY
Sbjct: 35 SSVFYAXFYGDLAEVKS-EIHIPDVEPAAFLILLKYXYSDEIDLEADTVLATLYAAKKYI 93
Query: 191 VKHLKAYCEKFLVSKL 206
V L C FL + L
Sbjct: 94 VPALAKACVNFLETSL 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,957,634
Number of Sequences: 62578
Number of extensions: 183971
Number of successful extensions: 591
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 14
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)