Query 023429
Match_columns 282
No_of_seqs 364 out of 1692
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:57:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 100.0 2.6E-28 5.6E-33 235.2 16.9 145 98-251 23-168 (557)
2 PHA02790 Kelch-like protein; P 100.0 1.9E-28 4.1E-33 232.7 12.8 144 98-251 20-167 (480)
3 PHA03098 kelch-like protein; P 100.0 1.7E-27 3.7E-32 229.2 17.5 144 98-251 7-150 (534)
4 KOG4441 Proteins containing BT 100.0 1.8E-27 3.8E-32 229.1 16.9 163 98-274 34-196 (571)
5 KOG4350 Uncharacterized conser 99.9 1.6E-25 3.4E-30 198.5 10.1 148 98-253 42-192 (620)
6 KOG2075 Topoisomerase TOP1-int 99.8 2.6E-19 5.6E-24 162.3 14.9 152 98-252 112-264 (521)
7 KOG4591 Uncharacterized conser 99.8 4.4E-19 9.6E-24 144.1 10.7 155 98-264 64-220 (280)
8 PF00651 BTB: BTB/POZ domain; 99.8 2.8E-19 6E-24 136.4 8.8 101 98-205 8-110 (111)
9 smart00225 BTB Broad-Complex, 99.7 1.5E-17 3.3E-22 120.8 9.3 90 102-199 1-90 (90)
10 KOG4682 Uncharacterized conser 99.7 3.2E-17 7E-22 145.7 12.6 155 98-268 67-225 (488)
11 KOG0783 Uncharacterized conser 99.7 1.2E-16 2.5E-21 152.5 10.1 160 101-267 711-876 (1267)
12 KOG0511 Ankyrin repeat protein 98.9 1.4E-08 3E-13 90.5 10.5 134 118-252 301-444 (516)
13 KOG0783 Uncharacterized conser 98.6 4.5E-08 9.7E-13 94.8 5.1 95 98-200 556-683 (1267)
14 KOG2838 Uncharacterized conser 98.4 5E-07 1.1E-11 77.6 5.1 112 99-210 235-392 (401)
15 KOG1987 Speckle-type POZ prote 98.3 3.4E-07 7.4E-12 81.9 2.8 135 117-251 109-248 (297)
16 KOG2716 Polymerase delta-inter 98.1 3.1E-05 6.6E-10 66.0 9.5 94 103-205 7-104 (230)
17 KOG2838 Uncharacterized conser 98.0 1.8E-05 3.9E-10 68.2 6.3 89 98-194 128-221 (401)
18 KOG3473 RNA polymerase II tran 97.8 0.00012 2.7E-09 53.1 8.0 74 117-191 26-112 (112)
19 PF11822 DUF3342: Domain of un 97.8 6.8E-05 1.5E-09 66.6 7.6 102 103-206 1-104 (317)
20 PF02214 BTB_2: BTB/POZ domain 97.8 2.7E-05 5.9E-10 57.4 4.2 87 103-198 1-94 (94)
21 PF07707 BACK: BTB And C-termi 97.6 0.00025 5.4E-09 52.7 6.7 41 211-251 1-41 (103)
22 smart00512 Skp1 Found in Skp1 97.6 0.00056 1.2E-08 51.4 8.3 60 103-170 4-64 (104)
23 PF03931 Skp1_POZ: Skp1 family 97.1 0.003 6.6E-08 42.7 6.9 57 103-169 3-59 (62)
24 smart00875 BACK BTB And C-term 97.0 0.0019 4.1E-08 47.5 5.7 41 211-251 1-41 (101)
25 KOG1724 SCF ubiquitin ligase, 97.0 0.0082 1.8E-07 48.7 9.7 89 117-206 14-127 (162)
26 KOG2714 SETA binding protein S 96.6 0.009 2E-07 54.9 7.9 86 103-196 13-102 (465)
27 KOG0511 Ankyrin repeat protein 96.3 0.0023 5.1E-08 57.8 2.4 89 99-196 148-236 (516)
28 KOG1778 CREB binding protein/P 96.0 0.0052 1.1E-07 55.2 2.8 135 117-252 35-172 (319)
29 KOG1665 AFH1-interacting prote 95.9 0.021 4.6E-07 48.2 5.8 91 102-200 10-105 (302)
30 COG5201 SKP1 SCF ubiquitin lig 95.5 0.15 3.3E-06 39.3 8.7 97 101-207 2-123 (158)
31 KOG2715 Uncharacterized conser 95.1 0.069 1.5E-06 43.1 5.9 95 103-205 23-121 (210)
32 PF01466 Skp1: Skp1 family, di 91.0 0.45 9.7E-06 33.6 4.3 51 173-223 10-63 (78)
33 KOG2075 Topoisomerase TOP1-int 85.6 2.5 5.5E-05 39.9 6.5 58 206-266 185-247 (521)
34 PF11822 DUF3342: Domain of un 81.6 0.74 1.6E-05 41.3 1.3 42 205-246 71-112 (317)
35 PF07707 BACK: BTB And C-termi 74.1 7.3 0.00016 28.2 4.7 60 180-239 2-75 (103)
36 KOG2723 Uncharacterized conser 70.4 13 0.00027 31.9 5.7 95 99-202 6-106 (221)
37 KOG3840 Uncharaterized conserv 64.1 9.2 0.0002 34.2 3.7 76 117-192 104-185 (438)
38 PF00651 BTB: BTB/POZ domain; 63.0 12 0.00026 27.3 3.8 30 208-237 81-110 (111)
39 PF13248 zf-ribbon_3: zinc-rib 59.4 5.3 0.00012 21.7 1.0 23 31-54 2-24 (26)
40 PF14835 zf-RING_6: zf-RING of 57.3 4.9 0.00011 27.2 0.7 38 30-70 27-64 (65)
41 PF02519 Auxin_inducible: Auxi 55.7 43 0.00093 24.8 5.6 57 102-167 40-99 (100)
42 PF12674 Zn_ribbon_2: Putative 52.5 5.6 0.00012 28.3 0.4 28 33-60 2-40 (81)
43 KOG4350 Uncharacterized conser 48.2 43 0.00093 31.4 5.4 71 131-205 93-176 (620)
44 PHA03098 kelch-like protein; P 44.8 52 0.0011 31.7 5.9 33 206-238 73-105 (534)
45 PHA02790 Kelch-like protein; P 43.6 39 0.00084 32.4 4.8 42 162-206 111-152 (480)
46 KOG4080 Mitochondrial ribosoma 41.4 25 0.00054 28.5 2.5 31 31-63 93-123 (176)
47 KOG4682 Uncharacterized conser 41.0 26 0.00056 32.7 2.9 33 173-205 169-201 (488)
48 PF13240 zinc_ribbon_2: zinc-r 40.8 15 0.00033 19.4 0.9 20 33-53 1-20 (23)
49 PHA02713 hypothetical protein; 37.5 63 0.0014 31.6 5.3 34 205-238 90-123 (557)
50 PF01466 Skp1: Skp1 family, di 35.9 1.5E+02 0.0032 20.6 5.7 38 200-239 7-44 (78)
51 smart00875 BACK BTB And C-term 34.4 48 0.001 23.4 3.1 25 181-205 3-27 (101)
52 TIGR00100 hypA hydrogenase nic 32.4 21 0.00044 27.2 0.8 33 23-55 62-95 (115)
53 PRK12380 hydrogenase nickel in 32.0 21 0.00045 27.1 0.7 33 23-55 62-95 (113)
54 PF14260 zf-C4pol: C4-type zin 31.7 85 0.0018 21.4 3.8 47 34-80 1-47 (73)
55 PF12172 DUF35_N: Rubredoxin-l 30.9 20 0.00043 21.1 0.4 22 31-53 11-32 (37)
56 PRK00927 tryptophanyl-tRNA syn 30.1 4.2E+02 0.0092 24.0 9.2 102 141-264 193-308 (333)
57 PRK00564 hypA hydrogenase nick 30.1 23 0.00049 27.1 0.7 33 23-55 63-97 (117)
58 cd01121 Sms Sms (bacterial rad 28.7 20 0.00044 33.2 0.2 20 33-53 2-21 (372)
59 PRK11823 DNA repair protein Ra 25.6 27 0.00059 33.2 0.5 23 30-53 6-28 (446)
60 PRK07591 threonine synthase; V 24.8 35 0.00076 32.1 1.1 23 31-53 18-40 (421)
61 PRK00398 rpoP DNA-directed RNA 24.4 31 0.00068 21.3 0.4 24 32-55 4-30 (46)
62 cd00350 rubredoxin_like Rubred 23.6 43 0.00094 19.2 0.9 24 32-55 2-26 (33)
63 KOG2259 Uncharacterized conser 23.0 6.3E+02 0.014 25.6 9.0 61 212-272 466-531 (823)
64 PF01155 HypA: Hydrogenase exp 22.8 19 0.00042 27.2 -0.9 31 25-55 64-95 (113)
65 TIGR00416 sms DNA repair prote 22.1 34 0.00073 32.7 0.4 24 30-54 6-29 (454)
66 PRK03681 hypA hydrogenase nick 21.2 42 0.00092 25.4 0.7 32 24-55 63-96 (114)
67 KOG1077 Vesicle coat complex A 21.2 1.1E+02 0.0023 31.0 3.5 35 157-191 403-437 (938)
68 COG1066 Sms Predicted ATP-depe 21.1 39 0.00085 31.8 0.6 24 31-55 7-30 (456)
69 PF06556 ASFV_p27: IAP-like pr 20.5 47 0.001 24.7 0.8 30 26-55 88-117 (131)
70 PRK00762 hypA hydrogenase nick 20.3 46 0.00099 25.7 0.7 31 24-55 63-101 (124)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.96 E-value=2.6e-28 Score=235.18 Aligned_cols=145 Identities=19% Similarity=0.347 Sum_probs=137.9
Q ss_pred CccccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccCC-cCeEEeCCCCHHHHHHHHHHHhCCCCCCCH
Q 023429 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESR-SGTIKISDVSYDALRAFVNYLYTAEACLDE 176 (282)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~-~~~i~l~di~~~~~~~lL~ylYtg~~~~~~ 176 (282)
..+|||+|.|++ ++.|+|||.|||++|+||++||.++|+|.. ..+|.|.++++++|+.+|+|+|||. ++.
T Consensus 23 ~~l~DV~L~v~~-------~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~ 93 (557)
T PHA02713 23 DILCDVIITIGD-------GEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISS 93 (557)
T ss_pred CCCCCEEEEeCC-------CCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCH
Confidence 579999999974 689999999999999999999999999864 7899999999999999999999997 689
Q ss_pred HHHHHHHHHhhhcCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCChhHHhhh
Q 023429 177 QLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELV 251 (282)
Q Consensus 177 ~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~ 251 (282)
+++.+||.+|++||++.|++.|.+||.+.++++||+.++.++..+.+..|.+.|.+||.+||.++.++++|.+|+
T Consensus 94 ~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~ 168 (557)
T PHA02713 94 MNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTV 168 (557)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCC
Confidence 999999999999999999999999999999999999999999889888999999999999999999999999987
No 2
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=1.9e-28 Score=232.65 Aligned_cols=144 Identities=17% Similarity=0.290 Sum_probs=136.1
Q ss_pred CccccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccCCcCeEEe--CCCCHHHHHHHHHHHhCCCCCCC
Q 023429 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKI--SDVSYDALRAFVNYLYTAEACLD 175 (282)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~~~i~l--~di~~~~~~~lL~ylYtg~~~~~ 175 (282)
..+|||++.++ +.|+|||.|||+.|+||++||.++|+|+.. .|.+ .++++++++.+|+|+|||++.++
T Consensus 20 ~~~~~~~~~~~---------~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it 89 (480)
T PHA02790 20 KKFKTIIEAIG---------GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYID 89 (480)
T ss_pred hhhceEEEEcC---------cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEe
Confidence 57999999885 799999999999999999999999999864 5655 38999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCC--hhHHhhh
Q 023429 176 EQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKC--EEYRELV 251 (282)
Q Consensus 176 ~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~--~~f~~L~ 251 (282)
.+|+.+++.+|++||++.+++.|.+||.++|+++||+.++.+|+.|++++|.+.+.+||.+||.++.++ ++|..|+
T Consensus 90 ~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~ 167 (480)
T PHA02790 90 SHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLS 167 (480)
T ss_pred cccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 8998876
No 3
>PHA03098 kelch-like protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=229.20 Aligned_cols=144 Identities=22% Similarity=0.404 Sum_probs=137.7
Q ss_pred CccccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccCCcCeEEeCCCCHHHHHHHHHHHhCCCCCCCHH
Q 023429 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (282)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~~~i~l~di~~~~~~~lL~ylYtg~~~~~~~ 177 (282)
..||||+|++.-+ +++|+|||.||+++|+||++||.++|. +..|.|++ ++++|+.+|+|+|||++.++.+
T Consensus 7 ~~~~Dv~l~~~~~------~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~ 76 (534)
T PHA03098 7 QKFCDESIIIVNG------GGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSN 76 (534)
T ss_pred CCCCCEEEEEEcC------CEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHH
Confidence 5799999998211 899999999999999999999999887 57899999 9999999999999999999999
Q ss_pred HHHHHHHHhhhcCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCChhHHhhh
Q 023429 178 LACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELV 251 (282)
Q Consensus 178 ~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~ 251 (282)
++.+|+.+|++|+++.|+..|+++|.+.++.+||+.++.+|..|++..|.+.|.+||.+||.++.++++|.+|+
T Consensus 77 ~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~ 150 (534)
T PHA03098 77 NVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLS 150 (534)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.95 E-value=1.8e-27 Score=229.12 Aligned_cols=163 Identities=29% Similarity=0.424 Sum_probs=152.8
Q ss_pred CccccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccCCcCeEEeCCCCHHHHHHHHHHHhCCCCCCCHH
Q 023429 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (282)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~~~i~l~di~~~~~~~lL~ylYtg~~~~~~~ 177 (282)
..+|||+|.++ +++|+|||.|||+.|+||++||.++++|+.+.+|.|.++++.++..+|+|+||+.+.++.+
T Consensus 34 ~~lcDv~L~v~--------~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~ 105 (571)
T KOG4441|consen 34 GLLCDVTLLVG--------DREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISED 105 (571)
T ss_pred CCCceEEEEEC--------CeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechH
Confidence 67999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCChhHHhhhhhChHH
Q 023429 178 LACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRL 257 (282)
Q Consensus 178 ~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~~~~~~l 257 (282)
++.+|+.+|++||++.+.+.|.+||.++++++||+.+..+|+.|++.+|.+.+..||.+||.++.++++|++|+.
T Consensus 106 nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~----- 180 (571)
T KOG4441|consen 106 NVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSL----- 180 (571)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCH-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred HHHHHHHHhhccccccC
Q 023429 258 VVEIYEAYLSKQVNTAA 274 (282)
Q Consensus 258 ~~el~~~l~~~~~~~~~ 274 (282)
.++...+.+..+++..
T Consensus 181 -~~l~~ll~~d~l~v~~ 196 (571)
T KOG4441|consen 181 -EELIGLLSSDDLNVDS 196 (571)
T ss_pred -HHHHhhccccCCCcCC
Confidence 4455555555555544
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.92 E-value=1.6e-25 Score=198.45 Aligned_cols=148 Identities=27% Similarity=0.456 Sum_probs=142.1
Q ss_pred CccccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccCCcCeEEeCCCCHHHHHHHHHHHhCCCCCC---
Q 023429 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACL--- 174 (282)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~~~i~l~di~~~~~~~lL~ylYtg~~~~--- 174 (282)
..++||+|+|+ ++.|+|||.|||+||.||++|+.++|.|+.+..|.|++.+.++|+.+|+|||||.+.+
T Consensus 42 e~y~DVtfvve--------~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~ 113 (620)
T KOG4350|consen 42 EDYSDVTFVVE--------DTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGV 113 (620)
T ss_pred CcccceEEEEe--------ccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccc
Confidence 57899999999 7999999999999999999999999999999999999999999999999999999876
Q ss_pred CHHHHHHHHHHhhhcCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCChhHHhhhhh
Q 023429 175 DEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEK 253 (282)
Q Consensus 175 ~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~~~ 253 (282)
..+...+.|.+|++|++++|.....+|+.+.+..+|++.++..|..|++++|.+.|+.|+.+|..+++..+.|..|++.
T Consensus 114 ~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~ 192 (620)
T KOG4350|consen 114 EEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKD 192 (620)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999999999999999854
No 6
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.82 E-value=2.6e-19 Score=162.29 Aligned_cols=152 Identities=30% Similarity=0.423 Sum_probs=140.7
Q ss_pred CccccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccCCcCeEEeCCCCHHHHHHHHHHHhCCCCCCCHH
Q 023429 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (282)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~~~i~l~di~~~~~~~lL~ylYtg~~~~~~~ 177 (282)
..++||.|+|+++++ ....||+||.||+..|.+|.+||++++.+....+|.+||+.+.+|..+|+|||++.+.+..+
T Consensus 112 ~~~adv~fivg~~~~---~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~~d 188 (521)
T KOG2075|consen 112 ELLADVHFIVGEEDG---GSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLAAD 188 (521)
T ss_pred cccceeEEEeccCCC---cccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhhHH
Confidence 568999999996422 25899999999999999999999999999878999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCcHhHHHHHHHHHHhcCCHHHHHHHHHH-HHHcChHHHHHHHHHHHHHhHHHhhCChhHHhhhh
Q 023429 178 LACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAF-AHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVE 252 (282)
Q Consensus 178 ~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~-A~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~~ 252 (282)
++..++.+|++|-++.|.+.|.++|..++...|.+..+.. |..++-++|...|++.|..++...+..+.|.++-.
T Consensus 189 tvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~ 264 (521)
T KOG2075|consen 189 TVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDS 264 (521)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhh
Confidence 9999999999999999999999999999888888777776 99999999999999999999999999999988753
No 7
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.80 E-value=4.4e-19 Score=144.14 Aligned_cols=155 Identities=30% Similarity=0.506 Sum_probs=133.2
Q ss_pred CccccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccCCcCeEEeCCCCHHHHHHHHHHHhCCCCCC--C
Q 023429 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACL--D 175 (282)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~~~i~l~di~~~~~~~lL~ylYtg~~~~--~ 175 (282)
..|||++|.++++. .+.+++||.||++||.+++- .++- .....+..+.|+++++|...|+||||+++.+ +
T Consensus 64 ~qfSDlk~K~~gns-----~k~i~AHKfVLAARsD~Wkf--aN~~-dekse~~~~dDad~Ea~~t~iRWIYTDEidfk~d 135 (280)
T KOG4591|consen 64 EQFSDLKFKFAGNS-----DKHIPAHKFVLAARSDFWKF--ANGG-DEKSEELDLDDADFEAFHTAIRWIYTDEIDFKED 135 (280)
T ss_pred ccccceeEEecCCc-----cccCchhhhhhhhhcchhhh--ccCC-CcchhhhcccccCHHHHHHhheeeeccccccccc
Confidence 67999999998432 68999999999999999863 3221 2234567888999999999999999999887 5
Q ss_pred HHHHHHHHHHhhhcCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCChhHHhhhhhCh
Q 023429 176 EQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDP 255 (282)
Q Consensus 176 ~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~~~~~ 255 (282)
+..+.++..+|++|+++.|+..|++-+...++++||+.+|.+|+..++.+|...|...|+.+|+.+- ..+|.+++ |
T Consensus 136 D~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~-~a~FaqMs---~ 211 (280)
T KOG4591|consen 136 DEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLG-KADFAQMS---A 211 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccC-hHHHHhcc---H
Confidence 6788999999999999999999999999999999999999999999999999999999999999865 57888886 6
Q ss_pred HHHHHHHHH
Q 023429 256 RLVVEIYEA 264 (282)
Q Consensus 256 ~l~~el~~~ 264 (282)
.++..++..
T Consensus 212 aLLYklId~ 220 (280)
T KOG4591|consen 212 ALLYKLIDG 220 (280)
T ss_pred HHHHHHHcC
Confidence 666665543
No 8
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.79 E-value=2.8e-19 Score=136.42 Aligned_cols=101 Identities=36% Similarity=0.615 Sum_probs=90.8
Q ss_pred CccccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCc-cccCCcCeEEeCCCCHHHHHHHHHHHhCCCCCCC-
Q 023429 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNE-MEESRSGTIKISDVSYDALRAFVNYLYTAEACLD- 175 (282)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~-~~e~~~~~i~l~di~~~~~~~lL~ylYtg~~~~~- 175 (282)
..++|++|.+++ +..|+|||.||+++|+||+.||.+. +.+.....|.++++++++|..+|+|+|+|.+.++
T Consensus 8 ~~~~D~~i~v~d-------~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 8 NEFSDVTIRVGD-------GKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp TTS--EEEEETT-------TEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred CCCCCEEEEECC-------CEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 468999999995 6999999999999999999999997 5666666899999999999999999999999998
Q ss_pred HHHHHHHHHHhhhcCcHhHHHHHHHHHHhc
Q 023429 176 EQLACDLLELAEKYQVKHLKAYCEKFLVSK 205 (282)
Q Consensus 176 ~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~ 205 (282)
.+++.+++.+|++|+++.|+..|.++|.++
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999864
No 9
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.73 E-value=1.5e-17 Score=120.78 Aligned_cols=90 Identities=41% Similarity=0.616 Sum_probs=85.2
Q ss_pred cEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccCCcCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHH
Q 023429 102 DVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACD 181 (282)
Q Consensus 102 Dv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~~~i~l~di~~~~~~~lL~ylYtg~~~~~~~~~~~ 181 (282)
|++|.++ ++.|++||.+|+++|+||+.||.+++.+.....+.++++++.+|+.+|+|+|++.+.++..++..
T Consensus 1 dv~i~v~--------~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~ 72 (90)
T smart00225 1 DVTLVVG--------GKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEE 72 (90)
T ss_pred CeEEEEC--------CEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHH
Confidence 7889999 89999999999999999999999988877788999999999999999999999999999999999
Q ss_pred HHHHhhhcCcHhHHHHHH
Q 023429 182 LLELAEKYQVKHLKAYCE 199 (282)
Q Consensus 182 ll~~A~~~~l~~L~~~c~ 199 (282)
++.+|++|+++.|+..|+
T Consensus 73 l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 73 LLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHCcHHHHhhhC
Confidence 999999999999998884
No 10
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.73 E-value=3.2e-17 Score=145.72 Aligned_cols=155 Identities=20% Similarity=0.271 Sum_probs=140.8
Q ss_pred CccccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccCCcCeEEe----CCCCHHHHHHHHHHHhCCCCC
Q 023429 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKI----SDVSYDALRAFVNYLYTAEAC 173 (282)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~~~i~l----~di~~~~~~~lL~ylYtg~~~ 173 (282)
..-+||++.+- |+++++||..| ..|+||++||.|.|+|++.+.|.+ |.|+..++..++.-+|.+++.
T Consensus 67 ~enSDv~l~al--------g~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve 137 (488)
T KOG4682|consen 67 GENSDVILEAL--------GFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE 137 (488)
T ss_pred CCCcceehhhc--------cceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee
Confidence 46799999998 89999999999 469999999999999999987766 469999999999999999999
Q ss_pred CCHHHHHHHHHHhhhcCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCChhHHhhhhh
Q 023429 174 LDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEK 253 (282)
Q Consensus 174 ~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~~~ 253 (282)
|..+.+..++.+|.++++++|.+.|.+.|++.+++.+++..|..+.+|+...+++.|.+++..|+..+....-+.+++
T Consensus 138 I~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~-- 215 (488)
T KOG4682|consen 138 IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEIS-- 215 (488)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999988776555665
Q ss_pred ChHHHHHHHHHHhhc
Q 023429 254 DPRLVVEIYEAYLSK 268 (282)
Q Consensus 254 ~~~l~~el~~~l~~~ 268 (282)
.+++..++.+
T Consensus 216 -----~~Lm~~ll~S 225 (488)
T KOG4682|consen 216 -----INLMKQLLGS 225 (488)
T ss_pred -----HHHHHHHhCC
Confidence 5566655544
No 11
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.68 E-value=1.2e-16 Score=152.52 Aligned_cols=160 Identities=24% Similarity=0.369 Sum_probs=134.9
Q ss_pred ccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccCCcCeEEeCCCCHHHHHHHHHHHhC-CCCCC-----
Q 023429 101 TDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYT-AEACL----- 174 (282)
Q Consensus 101 sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~~~i~l~di~~~~~~~lL~ylYt-g~~~~----- 174 (282)
-|+.|++.| |+.++||+.+|++|++||..||..-|.|+..-.+.+.-+..+.+..+|+|+|+ ++..+
T Consensus 711 ~d~~i~~KD-------Gkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~ 783 (1267)
T KOG0783|consen 711 MDTVIKLKD-------GKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLK 783 (1267)
T ss_pred eeEEEEecC-------CcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccc
Confidence 366777765 89999999999999999999999999998876666666779999999999994 44332
Q ss_pred CHHHHHHHHHHhhhcCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCChhHHhhhhhC
Q 023429 175 DEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKD 254 (282)
Q Consensus 175 ~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~~~~ 254 (282)
..+.+.+++.+||.|-+.+|+..|+..|.+.++..++..++++|..|++.+|+..|++||..|+..++......++....
T Consensus 784 ~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~~ 863 (1267)
T KOG0783|consen 784 ESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGFH 863 (1267)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcchH
Confidence 34678899999999999999999999999999999999999999999999999999999999999998766655555444
Q ss_pred hHHHHHHHHHHhh
Q 023429 255 PRLVVEIYEAYLS 267 (282)
Q Consensus 255 ~~l~~el~~~l~~ 267 (282)
..-+.+-++++++
T Consensus 864 LK~l~~~yrkm~~ 876 (1267)
T KOG0783|consen 864 LKKLAQRYRKMLS 876 (1267)
T ss_pred HHHHHHHHHHHhh
Confidence 4444555555555
No 12
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.88 E-value=1.4e-08 Score=90.53 Aligned_cols=134 Identities=18% Similarity=0.157 Sum_probs=112.2
Q ss_pred eeEehhHHHHhhcCHHHHHhhcCccccCC-c---CeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhcCcH-
Q 023429 118 VPVPAHKAVLVSRSPVFKAMLDNEMEESR-S---GTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVK- 192 (282)
Q Consensus 118 ~~~~aHk~iLa~~S~yF~~mf~~~~~e~~-~---~~i~l~di~~~~~~~lL~ylYtg~~~~~~~~~~~ll~~A~~~~l~- 192 (282)
..+|||..+++ |.+||+.||.|++.|+. . ....+|.....+.+.+++|+|+++..+.+.-+.+++-+|+++.+.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 56999999995 67899999999999854 2 234566777889999999999999999999999999999999765
Q ss_pred -h-HHHHHHHHHHhc---CCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCChhHHhhhh
Q 023429 193 -H-LKAYCEKFLVSK---LNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVE 252 (282)
Q Consensus 193 -~-L~~~c~~~l~~~---l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~~ 252 (282)
. |+.++...|.+. ++.-++.+++.+++......|...+..|++.|+..+...|++.+...
T Consensus 380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~ 444 (516)
T KOG0511|consen 380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLR 444 (516)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 2 555555555443 45567999999999999999999999999999999999999987643
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.60 E-value=4.5e-08 Score=94.77 Aligned_cols=95 Identities=22% Similarity=0.364 Sum_probs=70.7
Q ss_pred CccccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccC------------CcCeEEeCCCCHHHHHHHHH
Q 023429 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEES------------RSGTIKISDVSYDALRAFVN 165 (282)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~------------~~~~i~l~di~~~~~~~lL~ 165 (282)
..+.||||.|+ ++.|+|||.||++||++|+.+|...-..+ ....|.+++++|..|+.+|+
T Consensus 556 ds~hDVtf~vg--------~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~ 627 (1267)
T KOG0783|consen 556 DSFHDVTFYVG--------TSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLH 627 (1267)
T ss_pred cccceEEEEec--------CeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHH
Confidence 56789999999 99999999999999999999996532221 12345678899999999999
Q ss_pred HHhCCCCCCC--------------HHHHH-------HHHHHhhhcCcHhHHHHHHH
Q 023429 166 YLYTAEACLD--------------EQLAC-------DLLELAEKYQVKHLKAYCEK 200 (282)
Q Consensus 166 ylYtg~~~~~--------------~~~~~-------~ll~~A~~~~l~~L~~~c~~ 200 (282)
||||+..--+ ..|.. -+...+.+|++.+|......
T Consensus 628 ~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s 683 (1267)
T KOG0783|consen 628 YIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVS 683 (1267)
T ss_pred HHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhh
Confidence 9999854222 12222 36777788887777654443
No 14
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.37 E-value=5e-07 Score=77.59 Aligned_cols=112 Identities=23% Similarity=0.337 Sum_probs=70.0
Q ss_pred ccccEEEEccCCC---CCCC----CCeeEehhHHHHhhcCHHHHHhhcCccccCC---------cCeEEeCC-CCHHHHH
Q 023429 99 CYTDVVLVAASES---GPAG----PAVPVPAHKAVLVSRSPVFKAMLDNEMEESR---------SGTIKISD-VSYDALR 161 (282)
Q Consensus 99 ~~sDv~l~v~~~~---~~~~----~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~---------~~~i~l~d-i~~~~~~ 161 (282)
.+-|+++.+.+.. ..++ ++.+++||+.|.++||++|+.++....+++. ...|.+.+ +-|.+|.
T Consensus 235 ~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA 314 (401)
T KOG2838|consen 235 KHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFA 314 (401)
T ss_pred ccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhh
Confidence 4456666665321 1122 3678999999999999999999865444332 23566664 4455544
Q ss_pred -HHHHHHhCCCCCCCH----------------------------HHHHHHHHHhhhcCcHhHHHHHHHHHHhcCCHHH
Q 023429 162 -AFVNYLYTAEACLDE----------------------------QLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDN 210 (282)
Q Consensus 162 -~lL~ylYtg~~~~~~----------------------------~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n 210 (282)
.+|.++||+.+.++. ..+.+|+.+|-+|.+..|.+.|+..+......++
T Consensus 315 ~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadl 392 (401)
T KOG2838|consen 315 PIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAADL 392 (401)
T ss_pred hhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 688999999876532 3344556666666666666666665555444443
No 15
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.30 E-value=3.4e-07 Score=81.88 Aligned_cols=135 Identities=25% Similarity=0.201 Sum_probs=113.8
Q ss_pred CeeEehhHHHHhhcCHHHHHhhcCccccCCcCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHH---HHHHHhhhcCcHh
Q 023429 117 AVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLAC---DLLELAEKYQVKH 193 (282)
Q Consensus 117 ~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~~~i~l~di~~~~~~~lL~ylYtg~~~~~~~~~~---~ll~~A~~~~l~~ 193 (282)
+..+.+|+.++++++++|+.|+..+..+.....+.+.+..+..++.+..|+|+..-........ .++.+|.+++.+.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~ 188 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH 188 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence 5669999999999999999999987666666677888999999999999999866554444444 8889999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHHH--hHHHhhCChhHHhhh
Q 023429 194 LKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITD--NMDKLTKCEEYRELV 251 (282)
Q Consensus 194 L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~--~~~~v~~~~~f~~L~ 251 (282)
|+..|...+...+...++...+..+..++...+...+..++.. +++.+....++....
T Consensus 189 lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~k 248 (297)
T KOG1987|consen 189 LKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKEK 248 (297)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999986 777776555554443
No 16
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.06 E-value=3.1e-05 Score=66.03 Aligned_cols=94 Identities=27% Similarity=0.363 Sum_probs=79.2
Q ss_pred EEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccc-c-CCcCeEEeCCCCHHHHHHHHHHHhCCCCCC--CHHH
Q 023429 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEME-E-SRSGTIKISDVSYDALRAFVNYLYTAEACL--DEQL 178 (282)
Q Consensus 103 v~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~-e-~~~~~i~l~di~~~~~~~lL~ylYtg~~~~--~~~~ 178 (282)
|.|-|| |..|.-.+.-|.....||++|+..++. + ..++.|-| |=+|.-|..+|+||-.|.+.+ +...
T Consensus 7 vkLnvG--------G~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~ke 77 (230)
T KOG2716|consen 7 VKLNVG--------GTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKE 77 (230)
T ss_pred EEEecC--------CeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHH
Confidence 457888 999999999999999999999998763 2 22344555 679999999999999887766 4577
Q ss_pred HHHHHHHhhhcCcHhHHHHHHHHHHhc
Q 023429 179 ACDLLELAEKYQVKHLKAYCEKFLVSK 205 (282)
Q Consensus 179 ~~~ll~~A~~~~l~~L~~~c~~~l~~~ 205 (282)
+.+|+.=|.+|.++.|.+.|...|...
T Consensus 78 l~El~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 78 LKELLREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 889999999999999999999987654
No 17
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.96 E-value=1.8e-05 Score=68.17 Aligned_cols=89 Identities=27% Similarity=0.392 Sum_probs=67.0
Q ss_pred CccccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccCCc--CeEEeCCCCHHHHHHHHHHHhCCCCCCC
Q 023429 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRS--GTIKISDVSYDALRAFVNYLYTAEACLD 175 (282)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~--~~i~l~di~~~~~~~lL~ylYtg~~~~~ 175 (282)
....|+-|+.. ...|+|||++|++|||+|+.+....-..... -.|..-.++.++|.++|+|+|+|+....
T Consensus 128 k~c~dldiiFk--------eTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmE 199 (401)
T KOG2838|consen 128 KVCGDLDIIFK--------ETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGME 199 (401)
T ss_pred eeeccceeeee--------eccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchh
Confidence 34568888888 7899999999999999999998764222211 2455567899999999999999987653
Q ss_pred H---HHHHHHHHHhhhcCcHhH
Q 023429 176 E---QLACDLLELAEKYQVKHL 194 (282)
Q Consensus 176 ~---~~~~~ll~~A~~~~l~~L 194 (282)
. +|+.-|-.++.-|+.+.-
T Consensus 200 d~~fqn~diL~QL~edFG~~kk 221 (401)
T KOG2838|consen 200 DLGFQNSDILEQLCEDFGCFKK 221 (401)
T ss_pred hcCCchHHHHHHHHHhhCCchh
Confidence 3 556667777777776543
No 18
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.84 E-value=0.00012 Score=53.09 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=61.6
Q ss_pred CeeEehhHHHHhhcCHHHHHhhcCc--cccCCcCeEEeCCCCHHHHHHHHHHH-----hCCC------CCCCHHHHHHHH
Q 023429 117 AVPVPAHKAVLVSRSPVFKAMLDNE--MEESRSGTIKISDVSYDALRAFVNYL-----YTAE------ACLDEQLACDLL 183 (282)
Q Consensus 117 ~~~~~aHk~iLa~~S~yF~~mf~~~--~~e~~~~~i~l~di~~~~~~~lL~yl-----Ytg~------~~~~~~~~~~ll 183 (282)
+..|-+-|.+- .-|+-.|+||.++ +.+...++|.+++++...++.+.+|+ |++. ++|+++.+.+||
T Consensus 26 dhefiikre~A-mtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL 104 (112)
T KOG3473|consen 26 DHEFIIKREHA-MTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELL 104 (112)
T ss_pred CcEEEEeehhh-hhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHH
Confidence 78888877654 5699999999986 56677789999999999999999997 4443 466889999999
Q ss_pred HHhhhcCc
Q 023429 184 ELAEKYQV 191 (282)
Q Consensus 184 ~~A~~~~l 191 (282)
.+|+++.+
T Consensus 105 ~aAn~Lec 112 (112)
T KOG3473|consen 105 MAANYLEC 112 (112)
T ss_pred HHhhhhcC
Confidence 99998863
No 19
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.82 E-value=6.8e-05 Score=66.62 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=80.1
Q ss_pred EEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCcccc-CCcCeEEeC-CCCHHHHHHHHHHHhCCCCCCCHHHHH
Q 023429 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEE-SRSGTIKIS-DVSYDALRAFVNYLYTAEACLDEQLAC 180 (282)
Q Consensus 103 v~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e-~~~~~i~l~-di~~~~~~~lL~ylYtg~~~~~~~~~~ 180 (282)
|+|.|-|+ ..+..+.|.+.+.+|...=.||+..+.....+ .....|.|. .-+..+|+-+++|+......++..|+.
T Consensus 1 v~ihV~De--~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~Nvv 78 (317)
T PF11822_consen 1 VVIHVCDE--ARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVV 78 (317)
T ss_pred CEEEEEcC--CCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEE
Confidence 35555432 23447899999999999999999999652211 122344443 457899999999999988889999999
Q ss_pred HHHHHhhhcCcHhHHHHHHHHHHhcC
Q 023429 181 DLLELAEKYQVKHLKAYCEKFLVSKL 206 (282)
Q Consensus 181 ~ll~~A~~~~l~~L~~~c~~~l~~~l 206 (282)
.++.-|++++|++|.+.|..|+.+++
T Consensus 79 sIliSS~FL~M~~Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 79 SILISSEFLQMESLVEECLQYCHDHM 104 (317)
T ss_pred EeEehhhhhccHHHHHHHHHHHHHhH
Confidence 99999999999999999999997654
No 20
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.80 E-value=2.7e-05 Score=57.39 Aligned_cols=87 Identities=23% Similarity=0.287 Sum_probs=66.0
Q ss_pred EEEEccCCCCCCCCCeeEehhHHHHh-hcCHHHHHhhcCc---cccCCcCeEEeCCCCHHHHHHHHHHHhC-CCCCCC-H
Q 023429 103 VVLVAASESGPAGPAVPVPAHKAVLV-SRSPVFKAMLDNE---MEESRSGTIKISDVSYDALRAFVNYLYT-AEACLD-E 176 (282)
Q Consensus 103 v~l~v~~~~~~~~~~~~~~aHk~iLa-~~S~yF~~mf~~~---~~e~~~~~i~l~di~~~~~~~lL~ylYt-g~~~~~-~ 176 (282)
|+|.|| |+.|.+-+..|. ....+|..|+.+. ........+-+ |-+|..|+.+|+|+-+ +.+..+ .
T Consensus 1 V~lNVG--------G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~ 71 (94)
T PF02214_consen 1 VRLNVG--------GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDE 71 (94)
T ss_dssp EEEEET--------TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TT
T ss_pred CEEEEC--------CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCc
Confidence 678999 999999999998 4457999999864 33444566666 6799999999999999 666653 5
Q ss_pred HHHHHHHHHhhhcCcHhH-HHHH
Q 023429 177 QLACDLLELAEKYQVKHL-KAYC 198 (282)
Q Consensus 177 ~~~~~ll~~A~~~~l~~L-~~~c 198 (282)
.....++.-|.+|+++.| ++.|
T Consensus 72 ~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 72 ICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp S-HHHHHHHHHHHT-HHHHBHHC
T ss_pred hhHHHHHHHHHHcCCCccccCCC
Confidence 677889999999999998 5554
No 21
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.59 E-value=0.00025 Score=52.72 Aligned_cols=41 Identities=29% Similarity=0.506 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCChhHHhhh
Q 023429 211 SVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELV 251 (282)
Q Consensus 211 ~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~ 251 (282)
|+.++.+|..|+...|.+.|.+||..||.++..+++|.+|+
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~ 41 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELP 41 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCC
Confidence 68899999999999999999999999999999999999998
No 22
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.55 E-value=0.00056 Score=51.41 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=47.4
Q ss_pred EEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccc-cCCcCeEEeCCCCHHHHHHHHHHHhCC
Q 023429 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEME-ESRSGTIKISDVSYDALRAFVNYLYTA 170 (282)
Q Consensus 103 v~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~-e~~~~~i~l~di~~~~~~~lL~ylYtg 170 (282)
|+|+..+ |..|.+.+.+. ..|..++.|+..... ......|.+++++..+++.+++|++..
T Consensus 4 v~L~S~D-------g~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h 64 (104)
T smart00512 4 IKLISSD-------GEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHH 64 (104)
T ss_pred EEEEeCC-------CCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHc
Confidence 5666654 89999999987 689999999976322 222258999999999999999999653
No 23
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=97.08 E-value=0.003 Score=42.74 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=45.4
Q ss_pred EEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccCCcCeEEeCCCCHHHHHHHHHHHhC
Q 023429 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYT 169 (282)
Q Consensus 103 v~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~~~i~l~di~~~~~~~lL~ylYt 169 (282)
|+|+..| |..|.+.+.++ ..|..++.|+.+...+.. .|.+++++...++.+++|++.
T Consensus 3 v~L~SsD-------g~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSD-------GQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETT-------SEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCC-------CCEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 5566655 89999999988 579999999976432222 799999999999999999963
No 24
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.00 E-value=0.0019 Score=47.46 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCChhHHhhh
Q 023429 211 SVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELV 251 (282)
Q Consensus 211 ~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~ 251 (282)
|+.++.+|..|+...|.+.|..||..||..+.++++|..|+
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~ 41 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELS 41 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCC
Confidence 46788899999999999999999999999999999999997
No 25
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0082 Score=48.69 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=67.0
Q ss_pred CeeEehhHHHHhhcCHHHHHhhcCccccCCcCeEEeCCCCHHHHHHHHHHHhCCCCC---------------C-------
Q 023429 117 AVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEAC---------------L------- 174 (282)
Q Consensus 117 ~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~~~i~l~di~~~~~~~lL~ylYtg~~~---------------~------- 174 (282)
|..|.+-..++ ..|..+.+++...--......|.|+.++...|..+|.|++...-. +
T Consensus 14 G~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~F 92 (162)
T KOG1724|consen 14 GEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEF 92 (162)
T ss_pred CceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHH
Confidence 89999998887 568888888864211111157999999999999999999874321 1
Q ss_pred ---CHHHHHHHHHHhhhcCcHhHHHHHHHHHHhcC
Q 023429 175 ---DEQLACDLLELAEKYQVKHLKAYCEKFLVSKL 206 (282)
Q Consensus 175 ---~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l 206 (282)
+..++.+|+.+|++++++.|..+|.+.+...+
T Consensus 93 lk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 93 LKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred HhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 22577888888999999999888888776554
No 26
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.60 E-value=0.009 Score=54.94 Aligned_cols=86 Identities=19% Similarity=0.160 Sum_probs=69.7
Q ss_pred EEEEccCCCCCCCCCeeEehhHHHHhhcC--HHHHHhhcCccccCCcCe-EEeCCCCHHHHHHHHHHHhCCCCCCCHHHH
Q 023429 103 VVLVAASESGPAGPAVPVPAHKAVLVSRS--PVFKAMLDNEMEESRSGT-IKISDVSYDALRAFVNYLYTAEACLDEQLA 179 (282)
Q Consensus 103 v~l~v~~~~~~~~~~~~~~aHk~iLa~~S--~yF~~mf~~~~~e~~~~~-i~l~di~~~~~~~lL~ylYtg~~~~~~~~~ 179 (282)
|.|-|+ |+.|.-.+.-|+... .+|.+++.+.|.-..... ..+-|=+|+.|..+|+|+-||++++.....
T Consensus 13 V~lNVG--------GriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~ 84 (465)
T KOG2714|consen 13 VKLNVG--------GRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFP 84 (465)
T ss_pred EEEecC--------ceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCch
Confidence 678999 999999999997765 699999988776544432 344477999999999999999999966555
Q ss_pred HHHHH-HhhhcCcHhHHH
Q 023429 180 CDLLE-LAEKYQVKHLKA 196 (282)
Q Consensus 180 ~~ll~-~A~~~~l~~L~~ 196 (282)
..++. -|.+|++..|..
T Consensus 85 ~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 85 ERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhhhhhcCcHHHHH
Confidence 55555 899999999886
No 27
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.32 E-value=0.0023 Score=57.78 Aligned_cols=89 Identities=20% Similarity=0.231 Sum_probs=65.5
Q ss_pred ccccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccCCcCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHH
Q 023429 99 CYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQL 178 (282)
Q Consensus 99 ~~sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~~~i~l~di~~~~~~~lL~ylYtg~~~~~~~~ 178 (282)
...|+++.+.. |+.|.|||..|+++|.+|...+-.-|. ...+|.-..+-+.+|..|++|+|-..-.+-...
T Consensus 148 ~~~di~f~~q~-------g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~~~v~~~~f~~flk~lyl~~na~~~~q 218 (516)
T KOG0511|consen 148 CCHDIDFLQQE-------GANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQ 218 (516)
T ss_pred cccchHHHhhc-------cccccHHHHHHHhhhcccCchhhhhcc--ccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhH
Confidence 34588888875 899999999999999998766544332 224555556778999999999997644444455
Q ss_pred HHHHHHHhhhcCcHhHHH
Q 023429 179 ACDLLELAEKYQVKHLKA 196 (282)
Q Consensus 179 ~~~ll~~A~~~~l~~L~~ 196 (282)
..+|+.+..+|+++.|..
T Consensus 219 ynallsi~~kF~~e~l~~ 236 (516)
T KOG0511|consen 219 YNALLSIEVKFSKEKLSL 236 (516)
T ss_pred HHHHHhhhhhccHHHhHH
Confidence 577888888888776653
No 28
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=95.95 E-value=0.0052 Score=55.21 Aligned_cols=135 Identities=27% Similarity=0.320 Sum_probs=109.7
Q ss_pred CeeEehhHHHHhhcCHHHHHhhcCccccCCcCeEEeCCCCHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHhhhcCcHhH
Q 023429 117 AVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDE--QLACDLLELAEKYQVKHL 194 (282)
Q Consensus 117 ~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~~~i~l~di~~~~~~~lL~ylYtg~~~~~~--~~~~~ll~~A~~~~l~~L 194 (282)
...+.+|+.+|...|+.|..+....-..+....+.+-.+....+..+..++|.. +..-+ .....++.+...|.++.+
T Consensus 35 ~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~~ 113 (319)
T KOG1778|consen 35 KDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQP 113 (319)
T ss_pred hhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccCc
Confidence 789999999999999999988765523333456677778889999999999987 43332 445667777788999999
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCChhHHhhhh
Q 023429 195 KAYCEKFLVS-KLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVE 252 (282)
Q Consensus 195 ~~~c~~~l~~-~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~~ 252 (282)
+.-|...+.. .++..+++.++..+..+....|.......+...+.....++.+.....
T Consensus 114 ~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c 172 (319)
T KOG1778|consen 114 KADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTC 172 (319)
T ss_pred cccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeec
Confidence 9888887775 678889999999999999999999999999999999988777665543
No 29
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.86 E-value=0.021 Score=48.21 Aligned_cols=91 Identities=22% Similarity=0.186 Sum_probs=70.0
Q ss_pred cEEEEccCCCCCCCCCeeEehhHHHHhhcC--HHHHHhhcCc--cccCCcCeEEeCCCCHHHHHHHHHHHhCCCCCC-CH
Q 023429 102 DVVLVAASESGPAGPAVPVPAHKAVLVSRS--PVFKAMLDNE--MEESRSGTIKISDVSYDALRAFVNYLYTAEACL-DE 176 (282)
Q Consensus 102 Dv~l~v~~~~~~~~~~~~~~aHk~iLa~~S--~yF~~mf~~~--~~e~~~~~i~l~di~~~~~~~lL~ylYtg~~~~-~~ 176 (282)
=|.+.++ |+.|.--...|..+- ..+.+||.+. +.+....-..+-|-+|..|+.+|.|+-.|.+.. +.
T Consensus 10 ~vrlnig--------Gk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~ 81 (302)
T KOG1665|consen 10 MVRLNIG--------GKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSD 81 (302)
T ss_pred hheeecC--------CeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCC
Confidence 4567777 788877776666654 3778888764 223333445555789999999999999999875 56
Q ss_pred HHHHHHHHHhhhcCcHhHHHHHHH
Q 023429 177 QLACDLLELAEKYQVKHLKAYCEK 200 (282)
Q Consensus 177 ~~~~~ll~~A~~~~l~~L~~~c~~ 200 (282)
-++..++..|++|++-.|++..+.
T Consensus 82 i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 82 IDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred ccHHHHHHHhhHHhhHhHHhHHhh
Confidence 789999999999999999987776
No 30
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.15 Score=39.32 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=69.6
Q ss_pred ccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccCCcCeEEeCCCCHHHHHHHHHHHhCCCCCCC-----
Q 023429 101 TDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLD----- 175 (282)
Q Consensus 101 sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~~~i~l~di~~~~~~~lL~ylYtg~~~~~----- 175 (282)
|-+.|+.++ |..|.+.+.+ |.+|-..+.|+... .+. .-.|.++.+...+|..+++|+-...-..+
T Consensus 2 s~i~l~s~d-------ge~F~vd~~i-AerSiLikN~l~d~-~~~-n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d 71 (158)
T COG5201 2 SMIELESID-------GEIFRVDENI-AERSILIKNMLCDS-TAC-NYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDEND 71 (158)
T ss_pred CceEEEecC-------CcEEEehHHH-HHHHHHHHHHhccc-ccc-CCCCcccchhHHHHHHHHHHHHhccccCCCccCh
Confidence 345666654 8899988765 57888888887542 222 23467789999999999999865432211
Q ss_pred --------------------HHHHHHHHHHhhhcCcHhHHHHHHHHHHhcCC
Q 023429 176 --------------------EQLACDLLELAEKYQVKHLKAYCEKFLVSKLN 207 (282)
Q Consensus 176 --------------------~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~ 207 (282)
.+.+.++.-+|+++.++.|.++|.+.+...+.
T Consensus 72 ~~~rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 72 LEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred HhhhccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 15667888899999999999999888776554
No 31
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=95.05 E-value=0.069 Score=43.11 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=74.4
Q ss_pred EEEEccCCCCCCCCCeeEehhHHHHhhcCHHHH-HhhcCcc---ccCCcCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHH
Q 023429 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFK-AMLDNEM---EESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQL 178 (282)
Q Consensus 103 v~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~-~mf~~~~---~e~~~~~i~l~di~~~~~~~lL~ylYtg~~~~~~~~ 178 (282)
|.|.|| |..|.--|..|..-+.-|- .+....+ ......--.+-|-+|..|..+|+|+-.|.+.++.-.
T Consensus 23 VRlNVG--------Gt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~ 94 (210)
T KOG2715|consen 23 VRLNVG--------GTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLS 94 (210)
T ss_pred EEEecC--------CEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhh
Confidence 677888 9999999999988884444 4444331 122223345667899999999999999999998866
Q ss_pred HHHHHHHhhhcCcHhHHHHHHHHHHhc
Q 023429 179 ACDLLELAEKYQVKHLKAYCEKFLVSK 205 (282)
Q Consensus 179 ~~~ll~~A~~~~l~~L~~~c~~~l~~~ 205 (282)
-..+|.-|++|.++.|+++..+.|.+.
T Consensus 95 eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 95 EEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred hhccchhhhccCChHHHHHHHHHHHHH
Confidence 677999999999999999999988754
No 32
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=90.99 E-value=0.45 Score=33.62 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHhhhcCcHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCh
Q 023429 173 CLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKL---NWDNSVVNYAFAHQHNA 223 (282)
Q Consensus 173 ~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l---~~~n~~~~l~~A~~~~~ 223 (282)
.++...+.+|+.+|++++++.|...|...+...+ +++.+..++.+...+..
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~ 63 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTP 63 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSH
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCH
Confidence 3467789999999999999999999999887654 45555555555544443
No 33
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=85.56 E-value=2.5 Score=39.87 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCChhHHhhhh-----hChHHHHHHHHHHh
Q 023429 206 LNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVE-----KDPRLVVEIYEAYL 266 (282)
Q Consensus 206 l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~~-----~~~~l~~el~~~l~ 266 (282)
+..+|++.++..|.+|..+.|.+.|++||..+ +....+|..|+. ..|+++..+++.+.
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~---l~~~naf~~L~q~A~lf~ep~Li~~c~e~id 247 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRKN---LMADNAFLELFQRAKLFDEPSLISICLEVID 247 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---cCChHHHHHHHHHHHhhcCHHHHHHHHHHhh
Confidence 67899999999999999999999999999876 344566777665 56777666666554
No 34
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=81.59 E-value=0.74 Score=41.32 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCChh
Q 023429 205 KLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEE 246 (282)
Q Consensus 205 ~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~~ 246 (282)
.++++|++.++.-+.....+.|.+.|+.|+..|+.+|+.++-
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~ 112 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPC 112 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCC
Confidence 478999999999999999999999999999999999998763
No 35
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=74.12 E-value=7.3 Score=28.20 Aligned_cols=60 Identities=22% Similarity=0.417 Sum_probs=39.2
Q ss_pred HHHHHHhhhcCcHhHHHHHHHHHHhcC------------CHHHHHHHHHHHHH--cChHHHHHHHHHHHHHhHH
Q 023429 180 CDLLELAEKYQVKHLKAYCEKFLVSKL------------NWDNSVVNYAFAHQ--HNAKQLLEAALSLITDNMD 239 (282)
Q Consensus 180 ~~ll~~A~~~~l~~L~~~c~~~l~~~l------------~~~n~~~~l~~A~~--~~~~~L~~~~~~~i~~~~~ 239 (282)
.+++.+|..|+++.|...|.+++..++ +.+....++.--.. .+-..+.+.++.|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH
Confidence 468999999999999999999998653 22233333322111 2335688888888886654
No 36
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=70.44 E-value=13 Score=31.87 Aligned_cols=95 Identities=22% Similarity=0.193 Sum_probs=58.7
Q ss_pred ccccE-EEEccCCCCCCCCCeeEehhHHHH-hhcCHHHHHhhcCccc--cCCcCeEEeCCCCHHHHHHHHHHHhCCCCCC
Q 023429 99 CYTDV-VLVAASESGPAGPAVPVPAHKAVL-VSRSPVFKAMLDNEME--ESRSGTIKISDVSYDALRAFVNYLYTAEACL 174 (282)
Q Consensus 99 ~~sDv-~l~v~~~~~~~~~~~~~~aHk~iL-a~~S~yF~~mf~~~~~--e~~~~~i~l~di~~~~~~~lL~ylYtg~~~~ 174 (282)
.+.|+ .|-|+ |..|..-..-| .-.-....+||.+... ........| |=+-..|+.+|+|+-+..+.+
T Consensus 6 ~~~~~v~lnvG--------G~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~l 76 (221)
T KOG2723|consen 6 EYPDVVELNVG--------GAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLL 76 (221)
T ss_pred ccCCceeeccC--------CeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhccccccc
Confidence 45554 44555 54444333323 2233456666665211 111233333 456789999999999966666
Q ss_pred CH--HHHHHHHHHhhhcCcHhHHHHHHHHH
Q 023429 175 DE--QLACDLLELAEKYQVKHLKAYCEKFL 202 (282)
Q Consensus 175 ~~--~~~~~ll~~A~~~~l~~L~~~c~~~l 202 (282)
+. .++..|+..|++|+++.+.....+-.
T Consensus 77 pe~f~e~~~L~rEA~f~~l~~~~~~l~~~~ 106 (221)
T KOG2723|consen 77 PEDFAEVERLVREAEFFQLEAPVTYLLNSG 106 (221)
T ss_pred chhhhhHHHHHHHHHHHccccHHHHHhccc
Confidence 65 67889999999999997776555433
No 37
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=64.15 E-value=9.2 Score=34.21 Aligned_cols=76 Identities=12% Similarity=0.218 Sum_probs=52.1
Q ss_pred CeeEehhHHHHhhcC-HHHHHhhcCccc---cCCcCeEEe-CCCCHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHhhhcC
Q 023429 117 AVPVPAHKAVLVSRS-PVFKAMLDNEME---ESRSGTIKI-SDVSYDALRAFVNYLYTAEACL-DEQLACDLLELAEKYQ 190 (282)
Q Consensus 117 ~~~~~aHk~iLa~~S-~yF~~mf~~~~~---e~~~~~i~l-~di~~~~~~~lL~ylYtg~~~~-~~~~~~~ll~~A~~~~ 190 (282)
+..|.+-+.+|.+.- ...-.||.+++. ....++..+ ++++..+|+++|+|--+|.+.- +.-.+.+|-.++|++.
T Consensus 104 ~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLl 183 (438)
T KOG3840|consen 104 QTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYLL 183 (438)
T ss_pred eEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEE
Confidence 788888888885532 234456665431 122245555 4699999999999999998865 3456778888888876
Q ss_pred cH
Q 023429 191 VK 192 (282)
Q Consensus 191 l~ 192 (282)
++
T Consensus 184 ip 185 (438)
T KOG3840|consen 184 VP 185 (438)
T ss_pred ee
Confidence 54
No 38
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=62.98 E-value=12 Score=27.35 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHHh
Q 023429 208 WDNSVVNYAFAHQHNAKQLLEAALSLITDN 237 (282)
Q Consensus 208 ~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~ 237 (282)
.+++..++.+|..++.+.|...|..++.++
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 788999999999999999999999999876
No 39
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=59.44 E-value=5.3 Score=21.71 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=17.9
Q ss_pred cceecccccccccCCCCcchhhhh
Q 023429 31 TMRCISCREEYGTRDAGTCKECYE 54 (282)
Q Consensus 31 ~~~c~~~~~~~~~~~~~~c~~c~~ 54 (282)
.+.|.+||. ....+...|+.|..
T Consensus 2 ~~~Cp~Cg~-~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 2 EMFCPNCGA-EIDPDAKFCPNCGA 24 (26)
T ss_pred cCCCcccCC-cCCcccccChhhCC
Confidence 368999999 45688888888864
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=57.35 E-value=4.9 Score=27.25 Aligned_cols=38 Identities=21% Similarity=0.482 Sum_probs=19.4
Q ss_pred ccceecccccccccCCCCcchhhhhhhhhhHHHHHHHHHHH
Q 023429 30 ETMRCISCREEYGTRDAGTCKECYEEASETEEELKREIEDL 70 (282)
Q Consensus 30 ~~~~c~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~ 70 (282)
++.+|++|-.+.-.. -|+-|+.-|+.-|-...++++.+
T Consensus 27 eH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~ 64 (65)
T PF14835_consen 27 EHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSM 64 (65)
T ss_dssp S--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHH
T ss_pred ccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhcc
Confidence 568999999876543 49999999998888887777654
No 41
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=55.67 E-value=43 Score=24.81 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=41.9
Q ss_pred cEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCc---cccCCcCeEEeCCCCHHHHHHHHHHH
Q 023429 102 DVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNE---MEESRSGTIKISDVSYDALRAFVNYL 167 (282)
Q Consensus 102 Dv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~---~~e~~~~~i~l~di~~~~~~~lL~yl 167 (282)
-+++.||++ .+.|-++...|. .|.|+.++... +.-...+.|.|| .+...|+.+|..|
T Consensus 40 ~~~VyVG~~------~~Rfvvp~~~L~--hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 40 HFAVYVGEE------RRRFVVPVSYLN--HPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred eEEEEeCcc------ceEEEechHHcC--chhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 457777754 789999999984 68999999652 222335678887 6788898888765
No 42
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=52.46 E-value=5.6 Score=28.33 Aligned_cols=28 Identities=29% Similarity=0.656 Sum_probs=18.7
Q ss_pred eecccccc-----------cccCCCCcchhhhhhhhhhH
Q 023429 33 RCISCREE-----------YGTRDAGTCKECYEEASETE 60 (282)
Q Consensus 33 ~c~~~~~~-----------~~~~~~~~c~~c~~~~~~~~ 60 (282)
+|||||=- .......+|..||+.-.-+.
T Consensus 2 ~CQSCGMPl~~~~~~Gte~dGs~s~~YC~yCy~~G~Ft~ 40 (81)
T PF12674_consen 2 FCQSCGMPLSKDEDFGTEADGSKSEDYCSYCYQNGEFTQ 40 (81)
T ss_pred cCCcCcCccCCccccccccCCCCchhHHHHHhcCCceee
Confidence 68999852 22334458999999866544
No 43
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=48.18 E-value=43 Score=31.38 Aligned_cols=71 Identities=25% Similarity=0.436 Sum_probs=46.0
Q ss_pred CHHHHHhhcCccccCCcCeEEeCCCCHHHHHHHHHHHhC-CCCCC------------CHHHHHHHHHHhhhcCcHhHHHH
Q 023429 131 SPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYT-AEACL------------DEQLACDLLELAEKYQVKHLKAY 197 (282)
Q Consensus 131 S~yF~~mf~~~~~e~~~~~i~l~di~~~~~~~lL~ylYt-g~~~~------------~~~~~~~ll~~A~~~~l~~L~~~ 197 (282)
+.-|+.++.- --++.+.+.++..+.+-.+|..... |-..+ ..+|+..++.+|..|++++|...
T Consensus 93 ~eAF~~lLrY----iYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~ 168 (620)
T KOG4350|consen 93 SEAFRALLRY----IYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDY 168 (620)
T ss_pred HHHHHHHHHH----HhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHH
Confidence 4455555432 1235677888877776555544322 11111 22667778899999999999999
Q ss_pred HHHHHHhc
Q 023429 198 CEKFLVSK 205 (282)
Q Consensus 198 c~~~l~~~ 205 (282)
|..|+..+
T Consensus 169 C~mfmDrn 176 (620)
T KOG4350|consen 169 CMMFMDRN 176 (620)
T ss_pred HHHHHhcC
Confidence 99998754
No 44
>PHA03098 kelch-like protein; Provisional
Probab=44.78 E-value=52 Score=31.72 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhH
Q 023429 206 LNWDNSVVNYAFAHQHNAKQLLEAALSLITDNM 238 (282)
Q Consensus 206 l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~ 238 (282)
++.+|+..++..|..++.+.|+..|.+|+..++
T Consensus 73 i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l 105 (534)
T PHA03098 73 ITSNNVKDILSIANYLIIDFLINLCINYIIKII 105 (534)
T ss_pred EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 678999999999999999999999999998653
No 45
>PHA02790 Kelch-like protein; Provisional
Probab=43.64 E-value=39 Score=32.36 Aligned_cols=42 Identities=10% Similarity=0.325 Sum_probs=34.0
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhhhcCcHhHHHHHHHHHHhcC
Q 023429 162 AFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKL 206 (282)
Q Consensus 162 ~lL~ylYtg~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l 206 (282)
...+||- -.++.+|..+++.+|+.|++++|...+.+|+.+++
T Consensus 111 ~C~~fL~---~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF 152 (480)
T PHA02790 111 TCINFIL---RDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHF 152 (480)
T ss_pred HHHHHHH---hhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhH
Confidence 3334554 25677899999999999999999999999998763
No 46
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=41.39 E-value=25 Score=28.47 Aligned_cols=31 Identities=19% Similarity=0.481 Sum_probs=22.9
Q ss_pred cceecccccccccCCCCcchhhhhhhhhhHHHH
Q 023429 31 TMRCISCREEYGTRDAGTCKECYEEASETEEEL 63 (282)
Q Consensus 31 ~~~c~~~~~~~~~~~~~~c~~c~~~~~~~~~~~ 63 (282)
...|-+||..-+ .+..|.+||.-.....++.
T Consensus 93 l~~CP~CGh~k~--a~~LC~~Cy~kV~ket~ei 123 (176)
T KOG4080|consen 93 LNTCPACGHIKP--AHTLCDYCYAKVHKETSEI 123 (176)
T ss_pred cccCcccCcccc--ccccHHHHHHHHHHHHHHH
Confidence 367999998766 7889999998755443333
No 47
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=41.00 E-value=26 Score=32.71 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHhhhcCcHhHHHHHHHHHHhc
Q 023429 173 CLDEQLACDLLELAEKYQVKHLKAYCEKFLVSK 205 (282)
Q Consensus 173 ~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~ 205 (282)
.++++++...|.+|.+|+++.++..|.++|..+
T Consensus 169 ~lspkta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 169 TLSPKTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred hcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999754
No 48
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=40.79 E-value=15 Score=19.37 Aligned_cols=20 Identities=35% Similarity=0.723 Sum_probs=13.4
Q ss_pred eecccccccccCCCCcchhhh
Q 023429 33 RCISCREEYGTRDAGTCKECY 53 (282)
Q Consensus 33 ~c~~~~~~~~~~~~~~c~~c~ 53 (282)
+|..||.... +....|..|.
T Consensus 1 ~Cp~CG~~~~-~~~~fC~~CG 20 (23)
T PF13240_consen 1 YCPNCGAEIE-DDAKFCPNCG 20 (23)
T ss_pred CCcccCCCCC-CcCcchhhhC
Confidence 4777777775 5566676664
No 49
>PHA02713 hypothetical protein; Provisional
Probab=37.53 E-value=63 Score=31.64 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhH
Q 023429 205 KLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNM 238 (282)
Q Consensus 205 ~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~ 238 (282)
.++.+|+..++..|..++.+.|.+.|.+|+..++
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l 123 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIKDYT 123 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence 3789999999999999999999999999998653
No 50
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=35.90 E-value=1.5e+02 Score=20.56 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=30.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhHH
Q 023429 200 KFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMD 239 (282)
Q Consensus 200 ~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 239 (282)
+|+ .++....+.++..|...+...|.+.|.++|+..+.
T Consensus 7 ~F~--~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 7 EFL--DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp HHT---S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred HHH--HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 455 56888999999999999999999999999986654
No 51
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=34.37 E-value=48 Score=23.38 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.8
Q ss_pred HHHHHhhhcCcHhHHHHHHHHHHhc
Q 023429 181 DLLELAEKYQVKHLKAYCEKFLVSK 205 (282)
Q Consensus 181 ~ll~~A~~~~l~~L~~~c~~~l~~~ 205 (282)
.++.+|+.|+.+.|...|..++..+
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHH
Confidence 5778899999999999999998754
No 52
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=32.43 E-value=21 Score=27.20 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=24.4
Q ss_pred CccccccccceecccccccccCC-CCcchhhhhh
Q 023429 23 LESEAESETMRCISCREEYGTRD-AGTCKECYEE 55 (282)
Q Consensus 23 ~~~~~~~~~~~c~~~~~~~~~~~-~~~c~~c~~~ 55 (282)
-..+......+|..|+..+.... ...|+.|...
T Consensus 62 L~I~~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (115)
T TIGR00100 62 LNIEDEPVECECEDCSEEVSPEIDLYRCPKCHGI 95 (115)
T ss_pred EEEEeeCcEEEcccCCCEEecCCcCccCcCCcCC
Confidence 33445556699999999998754 6679999754
No 53
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=31.99 E-value=21 Score=27.08 Aligned_cols=33 Identities=18% Similarity=0.417 Sum_probs=23.9
Q ss_pred CccccccccceecccccccccC-CCCcchhhhhh
Q 023429 23 LESEAESETMRCISCREEYGTR-DAGTCKECYEE 55 (282)
Q Consensus 23 ~~~~~~~~~~~c~~~~~~~~~~-~~~~c~~c~~~ 55 (282)
-..+......+|..|+..+... ....|+.|...
T Consensus 62 L~I~~vp~~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 62 LHIVYKPAQAWCWDCSQVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred EEEEeeCcEEEcccCCCEEecCCcCccCcCCCCC
Confidence 3344555668999999988874 55669999854
No 54
>PF14260 zf-C4pol: C4-type zinc-finger of DNA polymerase delta
Probab=31.71 E-value=85 Score=21.37 Aligned_cols=47 Identities=17% Similarity=0.404 Sum_probs=33.3
Q ss_pred ecccccccccCCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHhhc
Q 023429 34 CISCREEYGTRDAGTCKECYEEASETEEELKREIEDLKAKVAFLRFW 80 (282)
Q Consensus 34 c~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (282)
|..|+..-.......|..|......+--.+..++...+.+..-+...
T Consensus 1 C~~C~~~~~~~~~~lC~~C~~~~~~~~~~l~~~~~~~E~~~~~l~~i 47 (73)
T PF14260_consen 1 CLVCGAKTQEGESPLCSNCRSDPQQTIYNLLSRLRELERRFNELWTI 47 (73)
T ss_pred CCCCCCcCCCCCCCcCcccCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788877766678999999777666666666677777766555443
No 55
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=30.90 E-value=20 Score=21.07 Aligned_cols=22 Identities=23% Similarity=0.461 Sum_probs=14.2
Q ss_pred cceecccccccccCCCCcchhhh
Q 023429 31 TMRCISCREEYGTRDAGTCKECY 53 (282)
Q Consensus 31 ~~~c~~~~~~~~~~~~~~c~~c~ 53 (282)
..+|..||..+-++. ..|..|.
T Consensus 11 ~~rC~~Cg~~~~pPr-~~Cp~C~ 32 (37)
T PF12172_consen 11 GQRCRDCGRVQFPPR-PVCPHCG 32 (37)
T ss_dssp EEE-TTT--EEES---SEETTTT
T ss_pred EEEcCCCCCEecCCC-cCCCCcC
Confidence 379999999988666 8899885
No 56
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=30.13 E-value=4.2e+02 Score=24.04 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=51.1
Q ss_pred ccccCCc---CeEEeCCCCHHHHHHHHHHHhCCCCCC-----------CHHHHHHHHHHhhhcCcHhHHHHHHHHHHhcC
Q 023429 141 EMEESRS---GTIKISDVSYDALRAFVNYLYTAEACL-----------DEQLACDLLELAEKYQVKHLKAYCEKFLVSKL 206 (282)
Q Consensus 141 ~~~e~~~---~~i~l~di~~~~~~~lL~ylYtg~~~~-----------~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l 206 (282)
.|+.+.. +.|.|.|-..+..+.+.. .||+...+ ...++..++.+-.. ..+.++...+-.
T Consensus 193 KMSKS~~~~~~~I~l~D~~~~I~~KI~~-a~td~~~~~~~~~~~~~~p~~~~l~~~~~~~~~---~~~eel~~~~~~--- 265 (333)
T PRK00927 193 KMSKSDPNDNNTINLLDDPKTIAKKIKK-AVTDSERLREIRYDLPNKPEVSNLLTIYSALSG---ESIEELEAEYEA--- 265 (333)
T ss_pred CCCCCCCCCCCeEEeeCCHHHHHHHHHh-CCCCCCcccccccCCCCCCccccHHHHHHHhCC---CCHHHHHHHHhc---
Confidence 3555554 689998855555555555 88765432 11244444443221 111111111111
Q ss_pred CHHHHHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCChhHHhhhhhChHHHHHHHHH
Q 023429 207 NWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEA 264 (282)
Q Consensus 207 ~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~~~~~~l~~el~~~ 264 (282)
...+..+++..+.+.|.+.+..+. +.|..+. .++..+.++++.
T Consensus 266 ------------g~~~~~~lK~~la~~i~~~l~pir--e~~~~~~-~~~~~~~~il~~ 308 (333)
T PRK00927 266 ------------GGKGYGDFKKDLAEAVVEFLAPIR--ERYEELL-ADPAYLDEILAE 308 (333)
T ss_pred ------------CCCChHHHHHHHHHHHHHHHHHHH--HHHHHHH-cCHHHHHHHHHH
Confidence 123456677777777766666553 4444554 255556666554
No 57
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=30.07 E-value=23 Score=27.06 Aligned_cols=33 Identities=18% Similarity=0.514 Sum_probs=23.6
Q ss_pred CccccccccceecccccccccCCC-C-cchhhhhh
Q 023429 23 LESEAESETMRCISCREEYGTRDA-G-TCKECYEE 55 (282)
Q Consensus 23 ~~~~~~~~~~~c~~~~~~~~~~~~-~-~c~~c~~~ 55 (282)
-..+......+|..|+..+..+.. - .|+.|...
T Consensus 63 L~Ie~vp~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 97 (117)
T PRK00564 63 LDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSK 97 (117)
T ss_pred EEEEecCCEEEhhhCCCccccCCccCCcCcCCCCC
Confidence 344555666899999998887643 3 49998754
No 58
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=28.72 E-value=20 Score=33.17 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=18.1
Q ss_pred eecccccccccCCCCcchhhh
Q 023429 33 RCISCREEYGTRDAGTCKECY 53 (282)
Q Consensus 33 ~c~~~~~~~~~~~~~~c~~c~ 53 (282)
+|++||.... .+.|.|+.|.
T Consensus 2 ~c~~cg~~~~-~~~g~cp~c~ 21 (372)
T cd01121 2 VCSECGYVSP-KWLGKCPECG 21 (372)
T ss_pred CCCCCCCCCC-CccEECcCCC
Confidence 6999999887 9999999994
No 59
>PRK11823 DNA repair protein RadA; Provisional
Probab=25.61 E-value=27 Score=33.19 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=20.0
Q ss_pred ccceecccccccccCCCCcchhhh
Q 023429 30 ETMRCISCREEYGTRDAGTCKECY 53 (282)
Q Consensus 30 ~~~~c~~~~~~~~~~~~~~c~~c~ 53 (282)
..-+|++||.... .+.+.|+.|.
T Consensus 6 ~~y~C~~Cg~~~~-~~~g~Cp~C~ 28 (446)
T PRK11823 6 TAYVCQECGAESP-KWLGRCPECG 28 (446)
T ss_pred CeEECCcCCCCCc-ccCeeCcCCC
Confidence 4468999999887 8999999994
No 60
>PRK07591 threonine synthase; Validated
Probab=24.75 E-value=35 Score=32.13 Aligned_cols=23 Identities=30% Similarity=0.918 Sum_probs=19.9
Q ss_pred cceecccccccccCCCCcchhhh
Q 023429 31 TMRCISCREEYGTRDAGTCKECY 53 (282)
Q Consensus 31 ~~~c~~~~~~~~~~~~~~c~~c~ 53 (282)
..+|..||.+|..+..-+|+.|.
T Consensus 18 ~l~C~~Cg~~~~~~~~~~C~~cg 40 (421)
T PRK07591 18 ALKCRECGAEYPLGPIHVCEECF 40 (421)
T ss_pred EEEeCCCCCcCCCCCCccCCCCC
Confidence 48999999999987778898884
No 61
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=24.41 E-value=31 Score=21.34 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=14.8
Q ss_pred ceecccccccccCC---CCcchhhhhh
Q 023429 32 MRCISCREEYGTRD---AGTCKECYEE 55 (282)
Q Consensus 32 ~~c~~~~~~~~~~~---~~~c~~c~~~ 55 (282)
-+|..||....-+. ..+|+.|...
T Consensus 4 y~C~~CG~~~~~~~~~~~~~Cp~CG~~ 30 (46)
T PRK00398 4 YKCARCGREVELDEYGTGVRCPYCGYR 30 (46)
T ss_pred EECCCCCCEEEECCCCCceECCCCCCe
Confidence 46788887654222 4677777643
No 62
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=23.55 E-value=43 Score=19.16 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=18.3
Q ss_pred ceecccccccccC-CCCcchhhhhh
Q 023429 32 MRCISCREEYGTR-DAGTCKECYEE 55 (282)
Q Consensus 32 ~~c~~~~~~~~~~-~~~~c~~c~~~ 55 (282)
..|..||..|.+. ..-.|+.|...
T Consensus 2 ~~C~~CGy~y~~~~~~~~CP~Cg~~ 26 (33)
T cd00350 2 YVCPVCGYIYDGEEAPWVCPVCGAP 26 (33)
T ss_pred EECCCCCCEECCCcCCCcCcCCCCc
Confidence 3688999998876 56688888654
No 63
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.99 E-value=6.3e+02 Score=25.63 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=41.3
Q ss_pred HHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCCh-----hHHhhhhhChHHHHHHHHHHhhccccc
Q 023429 212 VVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCE-----EYRELVEKDPRLVVEIYEAYLSKQVNT 272 (282)
Q Consensus 212 ~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~-----~f~~L~~~~~~l~~el~~~l~~~~~~~ 272 (282)
+.-+.-+.++........|+.-+..++...-+.. ....+-++++.+++.++.+++......
T Consensus 466 l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGqnH~~lv~s~m~rfl~kh~~f 531 (823)
T KOG2259|consen 466 LRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQNHRRLVLSNMGRFLEKHTSF 531 (823)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhccChhhHHHHHHHHHHhcccc
Confidence 3334444556667788888888888877664432 223567789999999999988654433
No 64
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=22.76 E-value=19 Score=27.23 Aligned_cols=31 Identities=23% Similarity=0.568 Sum_probs=18.9
Q ss_pred cccccccceecccccccccCCCC-cchhhhhh
Q 023429 25 SEAESETMRCISCREEYGTRDAG-TCKECYEE 55 (282)
Q Consensus 25 ~~~~~~~~~c~~~~~~~~~~~~~-~c~~c~~~ 55 (282)
.+.....-+|..|+..+.+.... .|+.|...
T Consensus 64 Ie~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PF01155_consen 64 IEEVPARARCRDCGHEFEPDEFDFSCPRCGSP 95 (113)
T ss_dssp EEEE--EEEETTTS-EEECHHCCHH-SSSSSS
T ss_pred EEecCCcEECCCCCCEEecCCCCCCCcCCcCC
Confidence 33444568999999999865554 57777654
No 65
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=22.10 E-value=34 Score=32.66 Aligned_cols=24 Identities=21% Similarity=0.601 Sum_probs=20.4
Q ss_pred ccceecccccccccCCCCcchhhhh
Q 023429 30 ETMRCISCREEYGTRDAGTCKECYE 54 (282)
Q Consensus 30 ~~~~c~~~~~~~~~~~~~~c~~c~~ 54 (282)
..-+|+.||-... .+.+.|+.|..
T Consensus 6 ~~y~C~~Cg~~~~-~~~g~Cp~C~~ 29 (454)
T TIGR00416 6 SKFVCQHCGADSP-KWQGKCPACHA 29 (454)
T ss_pred CeEECCcCCCCCc-cccEECcCCCC
Confidence 4578999999887 99999999943
No 66
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=21.21 E-value=42 Score=25.42 Aligned_cols=32 Identities=16% Similarity=0.420 Sum_probs=22.7
Q ss_pred ccccccccceecccccccccCCC--Ccchhhhhh
Q 023429 24 ESEAESETMRCISCREEYGTRDA--GTCKECYEE 55 (282)
Q Consensus 24 ~~~~~~~~~~c~~~~~~~~~~~~--~~c~~c~~~ 55 (282)
..+......+|..|+..+..... ..|+.|...
T Consensus 63 ~i~~~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 96 (114)
T PRK03681 63 HLEEQEAECWCETCQQYVTLLTQRVRRCPQCHGD 96 (114)
T ss_pred EEEeeCcEEEcccCCCeeecCCccCCcCcCcCCC
Confidence 33445566899999998876433 559999854
No 67
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.18 E-value=1.1e+02 Score=31.03 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhcCc
Q 023429 157 YDALRAFVNYLYTAEACLDEQLACDLLELAEKYQV 191 (282)
Q Consensus 157 ~~~~~~lL~ylYtg~~~~~~~~~~~ll~~A~~~~l 191 (282)
...+..+|+|+-|.++.+.++.+..+..+|.+|--
T Consensus 403 k~IV~elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 403 KQIVAELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 45677888898888888888888888888888854
No 68
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.10 E-value=39 Score=31.82 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=20.2
Q ss_pred cceecccccccccCCCCcchhhhhh
Q 023429 31 TMRCISCREEYGTRDAGTCKECYEE 55 (282)
Q Consensus 31 ~~~c~~~~~~~~~~~~~~c~~c~~~ 55 (282)
.-.|+.||.... .|.|.|+.|..-
T Consensus 7 ~f~C~~CG~~s~-KW~GkCp~Cg~W 30 (456)
T COG1066 7 AFVCQECGYVSP-KWLGKCPACGAW 30 (456)
T ss_pred EEEcccCCCCCc-cccccCCCCCCc
Confidence 357999998776 999999999854
No 69
>PF06556 ASFV_p27: IAP-like protein p27 C-terminus; InterPro: IPR010549 This entry represents the C-terminal region of the African swine fever virus (ASFV) IAP-like protein p27. This domain is found in conjunction with IPR001370 from INTERPRO. It has been suggested that the domain may be incoded by the gene involved in aspects of infection in the arthropod host, ticks of the genus Ornithodoros [].
Probab=20.52 E-value=47 Score=24.70 Aligned_cols=30 Identities=23% Similarity=0.564 Sum_probs=24.9
Q ss_pred ccccccceecccccccccCCCCcchhhhhh
Q 023429 26 EAESETMRCISCREEYGTRDAGTCKECYEE 55 (282)
Q Consensus 26 ~~~~~~~~c~~~~~~~~~~~~~~c~~c~~~ 55 (282)
.-++.+-+|-.||-+....+..-|.+|-..
T Consensus 88 nldnqttycmtcgie~i~kdenfc~acktl 117 (131)
T PF06556_consen 88 NLDNQTTYCMTCGIEQINKDENFCNACKTL 117 (131)
T ss_pred ccCCceEEEEeeCceecccchhhhhhhccc
Confidence 346677899999999999999999998643
No 70
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=20.31 E-value=46 Score=25.66 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=20.6
Q ss_pred ccccccccceecccccccccCC--------CCcchhhhhh
Q 023429 24 ESEAESETMRCISCREEYGTRD--------AGTCKECYEE 55 (282)
Q Consensus 24 ~~~~~~~~~~c~~~~~~~~~~~--------~~~c~~c~~~ 55 (282)
.........+| .|+..+.... ...|+.|...
T Consensus 63 ~I~~vp~~~~C-~Cg~~~~~~~~~~~~~~~~~~CP~Cgs~ 101 (124)
T PRK00762 63 IVEMIPVEIEC-ECGYEGVVDEDEIDHYAAVIECPVCGNK 101 (124)
T ss_pred EEEecCeeEEe-eCcCcccccccchhccccCCcCcCCCCC
Confidence 34455566899 9998876431 1468888744
Done!