BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023431
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 298 bits (764), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 147/260 (56%), Positives = 178/260 (68%), Gaps = 2/260 (0%)
Query: 21 SFYKDFDITWGDGRAKILNNGQLLTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAG 80
+F +++ TW K N G + L LDK +G+GFQSK YL+G MQ+KLVPG+SAG
Sbjct: 16 AFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAG 75
Query: 81 TVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPSAAFHT 140
TVTA+YL S S DEIDFEFLGN +G PY L TNVFT GKGDREQ+ +LWFDP+ FH
Sbjct: 76 TVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHY 135
Query: 141 YSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTD 200
YS+LWN IVF VD PIR KN + +GV FP NQPM+IYSSLWNADDWATRGGL KTD
Sbjct: 136 YSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTD 195
Query: 201 WTHAPFTASYRNFKANNACVWSNGKSSCASTSFRSRNSWLSQELDSTSQNRLKWVQKNYM 260
W+ APF ASYR+F + C S CA+ R + Q+LD+ RL WV++ Y
Sbjct: 196 WSKAPFIASYRSFHI-DGCEASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKYT 254
Query: 261 IYNYCTDTKRFPRGIPKECR 280
IYNYCTD R+P +P EC+
Sbjct: 255 IYNYCTDRSRYP-SMPPECK 273
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 194 bits (492), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 133/245 (54%), Gaps = 17/245 (6%)
Query: 30 WGDGRAKILNNGQLLTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKS 89
WG ++ LT+ LD SGSGF+S N Y G +KL G +AG +T++YL +
Sbjct: 51 WGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSN 108
Query: 90 ----PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPSAAFHTYSILW 145
PG DEID EFLG + G PYTL TNVF G GDRE + HLWFDP+ +H Y+I W
Sbjct: 109 NQDYPGKH-DEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDYHNYAIYW 167
Query: 146 NPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAP 205
P I+FFVD PIR P +P+ +Y S+W+A WAT G K D+ + P
Sbjct: 168 TPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWATENGKYKADYRYQP 224
Query: 206 FTASYRNFKANNACVWSNGKSSCASTSFRSRNSWLSQELDSTSQNRLKWVQKNYMIYNYC 265
F Y +FK + V SSC S Q++ + ++WVQKNYM+YNYC
Sbjct: 225 FVGKYEDFKLGSCTV--EAASSCNPASVSPYGQLSQQQVAA-----MEWVQKNYMVYNYC 277
Query: 266 TDTKR 270
D R
Sbjct: 278 DDPTR 282
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 194 bits (492), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 133/245 (54%), Gaps = 17/245 (6%)
Query: 30 WGDGRAKILNNGQLLTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKS 89
WG ++ LT+ LD SGSGF+S N Y G +KL G +AG +T++YL +
Sbjct: 28 WGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSN 85
Query: 90 ----PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPSAAFHTYSILW 145
PG DEID EFLG + G PYTL TNVF G GDRE + HLWFDP+ +H Y+I W
Sbjct: 86 NQDYPGKH-DEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDYHNYAIYW 144
Query: 146 NPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAP 205
P I+FFVD PIR P +P+ +Y S+W+A WAT G K D+ + P
Sbjct: 145 TPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWATENGKYKADYRYQP 201
Query: 206 FTASYRNFKANNACVWSNGKSSCASTSFRSRNSWLSQELDSTSQNRLKWVQKNYMIYNYC 265
F Y +FK + V SSC S Q++ + ++WVQKNYM+YNYC
Sbjct: 202 FVGKYEDFKLGSCTV--EAASSCNPASVSPYGQLSQQQVAA-----MEWVQKNYMVYNYC 254
Query: 266 TDTKR 270
D R
Sbjct: 255 DDPTR 259
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/250 (41%), Positives = 133/250 (53%), Gaps = 22/250 (8%)
Query: 30 WGDGRAKILNNGQLLTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKS 89
WG ++ LT+ LD SGSGF+S N Y G +KL G +AG +T++YL +
Sbjct: 27 WGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSN 84
Query: 90 ----PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGD-----REQQFHLWFDPSAAFHT 140
PG DEID EFLG + G PYTL TNVF G GD RE + HLWFDP+ +H
Sbjct: 85 NQDYPGKH-DEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLWFDPTQDYHN 143
Query: 141 YSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTD 200
Y+I W P I+FFVD PIR P +PM +Y S+W+A WAT G K D
Sbjct: 144 YAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPMWVYGSVWDASSWATENGKYKAD 200
Query: 201 WTHAPFTASYRNFKANNACVWSNGKSSCASTSFRSRNSWLSQELDSTSQNRLKWVQKNYM 260
+ + PF Y +FK + V SSC S Q++ + ++WVQKNYM
Sbjct: 201 YRYQPFVGKYEDFKLGSCTV--EAASSCNPASVSPYGQLSQQQVAA-----MEWVQKNYM 253
Query: 261 IYNYCTDTKR 270
+YNYC D R
Sbjct: 254 VYNYCDDPTR 263
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 187 bits (475), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 133/250 (53%), Gaps = 22/250 (8%)
Query: 30 WGDGRAKILNNGQLLTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKS 89
WG ++ LT+ LD SGSGF+S N Y G +KL G +AG +T++YL +
Sbjct: 30 WGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSN 87
Query: 90 ----PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGD-----REQQFHLWFDPSAAFHT 140
PG DEID EFLG + G PYTL TNVF G GD RE + HLWFDP+ +H
Sbjct: 88 NQDYPGKH-DEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWFDPTQDYHN 146
Query: 141 YSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTD 200
Y+I W P I+FFVD PIR P +P+ +Y S+W+A WAT G K D
Sbjct: 147 YAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWATENGKYKAD 203
Query: 201 WTHAPFTASYRNFKANNACVWSNGKSSCASTSFRSRNSWLSQELDSTSQNRLKWVQKNYM 260
+ + PF Y +FK + V SSC S Q++ + ++WVQKNYM
Sbjct: 204 YRYQPFVGKYEDFKLGSCTV--EAASSCNPASVSPYGQLSQQQVAA-----MEWVQKNYM 256
Query: 261 IYNYCTDTKR 270
+YNYC D R
Sbjct: 257 VYNYCDDPTR 266
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 29/190 (15%)
Query: 18 SAGSFYKDFD-------ITWGDGRAKILNNGQ----LLTLSLDKASGSGFQSKNEYLYGK 66
+ GSFY+ F+ W + + G+ L + S +K G G QS Y YG
Sbjct: 2 TGGSFYEPFNNYNTGLWQKWAFDHVSMTSLGEMRLSLTSPSYNKFDGGGNQSVQTYGYGL 61
Query: 67 IDMQLKLVPGNSAGTVTAYYLKS---PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGD 123
++ +K P + G V+A+Y + G+ WDEID EFLG D + N +TNG G+
Sbjct: 62 YEVNMK--PAKNVGIVSAFYTSTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGVGN 116
Query: 124 REQQFHLWFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSS 183
E+ +L FD + ++HTY+ W P I ++VDG +LK++ + +P P +IY S
Sbjct: 117 HEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATTQIP---QTPGKIYMS 169
Query: 184 LW---NADDW 190
LW D+W
Sbjct: 170 LWAGAGVDEW 179
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 22/175 (12%)
Query: 26 FDITWGDGRAKILNNGQL---LTLS-LDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGT 81
F+ TW N+G+L LT S +K + ++S N Y YG ++ +K P + G
Sbjct: 28 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 85
Query: 82 VTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPSAAF 138
V++++ + G+ WDEID EFLG D + N +TNG G E+ L FD S F
Sbjct: 86 VSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGF 142
Query: 139 HTYSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNA---DDW 190
HTY+ W P I ++VDG LK++ + +P + P +I +LWN DDW
Sbjct: 143 HTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 190
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 22/175 (12%)
Query: 26 FDITWGDGRAKILNNGQL---LTLS-LDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGT 81
F+ TW N+G+L LT S +K + ++S N Y YG ++ +K P + G
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 87
Query: 82 VTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPSAAF 138
V++++ + G+ WDEID EFLG D + N +TNG G E+ L FD S F
Sbjct: 88 VSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGF 144
Query: 139 HTYSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNA---DDW 190
HTY+ W P I ++VDG LK++ + +P + P +I +LWN DDW
Sbjct: 145 HTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 192
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 22/175 (12%)
Query: 26 FDITWGDGRAKILNNGQL---LTLS-LDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGT 81
F+ TW N+G+L LT S +K + ++S N Y YG ++ +K P + G
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 87
Query: 82 VTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPSAAF 138
V++++ + G+ WD+ID +FLG D + N +TNG G E+ L FD S F
Sbjct: 88 VSSFFTYTGPAHGTQWDQIDIQFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGF 144
Query: 139 HTYSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNA---DDW 190
HTY+ W P I ++VDG LK++ + +P + P +I +LWN DDW
Sbjct: 145 HTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 192
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 18/141 (12%)
Query: 56 FQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTL 112
++S N Y YG ++ +K P + G V++++ + G+ WDEID EFLG D +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 113 HTNVFTNGKGDREQQFHLWFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSESIGVPF 172
N +TNG G E+ L FD S FHTY+ W P I ++VDG LK++ + +P
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP- 115
Query: 173 PKNQPMRIYSSLWNA---DDW 190
+ P +I +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 18/141 (12%)
Query: 56 FQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTL 112
++S N Y YG ++ +K P + G V++++ + G+ WDEID EFLG D +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 113 HTNVFTNGKGDREQQFHLWFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSESIGVPF 172
N +TNG G E+ L FD S FHTY+ W P I ++VDG LK++ + +P
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP- 115
Query: 173 PKNQPMRIYSSLWNA---DDW 190
+ P +I +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 18/141 (12%)
Query: 56 FQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTL 112
++S N Y YG ++ +K P + G V++++ + G+ WDEID EFLG D +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 113 HTNVFTNGKGDREQQFHLWFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSESIGVPF 172
N +TNG G E+ L FD S FHTY+ W P I ++VDG LK++ + +P
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP- 115
Query: 173 PKNQPMRIYSSLWNA---DDW 190
+ P +I +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 24/176 (13%)
Query: 26 FDITWGDGRAKILNNGQLLTLSLDKASGSGF-----QSKNEYLYGKIDMQLKLVPGNSAG 80
F+ TW + + G++ LSL S + F +S Y YG ++ +K P + G
Sbjct: 30 FNCTWRANNVSMTSLGEM-RLSLTSPSYNKFDCGENRSVQTYGYGLYEVNMK--PAKNVG 86
Query: 81 TVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPSAA 137
V++++ + G+ WDEID EFLG D + N +TNG G+ E+ +L FD + +
Sbjct: 87 IVSSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGVGNHEKIVNLGFDAANS 143
Query: 138 FHTYSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNA---DDW 190
+HTY+ W P I ++VDG +LK++ + +P P +I +LWN D+W
Sbjct: 144 YHTYAFDWQPNSIKWYVDG----QLKHTATTQIP---QTPGKIMMNLWNGAGVDEW 192
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 24/176 (13%)
Query: 26 FDITWGDGRAKILNNGQLLTLSLDKASGSGF-----QSKNEYLYGKIDMQLKLVPGNSAG 80
F+ TW + + G++ L+L + + F +S Y YG ++++K P + G
Sbjct: 54 FNCTWRANNVSMTSLGEM-RLALTSPAYNKFDCGENRSVQTYGYGLYEVRMK--PAKNTG 110
Query: 81 TVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPSAA 137
V++++ + G+ WDEID EFLG D + N +TNG G+ E+ L FD + A
Sbjct: 111 IVSSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGAGNHEKIVDLGFDAANA 167
Query: 138 FHTYSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNA---DDW 190
+HTY+ W P I ++VDG +LK++ + +P P +I +LWN D+W
Sbjct: 168 YHTYAFDWQPNSIKWYVDG----QLKHTATNQIP---TTPGKIMMNLWNGTGVDEW 216
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 91 GSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPSAAFHTYSILWNPQRI 150
G+ WDEID EFLG D + N +TNG G E+ L FD S FHTY+ W P I
Sbjct: 17 GTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYI 73
Query: 151 VFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNA---DDW 190
++VDG LK++ + +P + P +I +LWN DDW
Sbjct: 74 KWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 109
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 18/145 (12%)
Query: 52 SGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKS---PGSTWDEIDFEFLGNLSGD 108
+G+ +++++++ YG Q+++ P + G V++++ + G+ WDEID EFLG D
Sbjct: 80 AGAEYRTRDKFGYGL--YQVRMKPAKNPGIVSSFFTYTGPVHGTPWDEIDIEFLGK---D 134
Query: 109 PYTLHTNVFTNGKGDREQQFHLWFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSESI 168
+ N +TN G+ E + L FD S FH Y+ W P I + VDG + + +
Sbjct: 135 TTKVQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDGEEVYRAYDDIPV 194
Query: 169 GVPFPKNQPMRIYSSLW---NADDW 190
P +I ++W D+W
Sbjct: 195 -------HPGKIMLNIWPGIGVDEW 212
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 46 LSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDF 99
+S+ SG+ + EY YGK + ++K+ ++GTV++ +L GS W E+D
Sbjct: 2 VSMKDFSGAELYTLEEYQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDI 59
Query: 100 EFLGNLSGDPYTLHTNVFTNGKG-DREQQFHLWFDPSA--AFHTYSILWNPQRIVFFVDG 156
E LG P + +N+ T G + + H P+A AFHTY + W P + + VDG
Sbjct: 60 EVLGK---SPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 157 TPIRELKNSE 166
+R+ + +
Sbjct: 117 QEVRKTEGGQ 126
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 52 SGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 105
SG+ + E YGK + ++K+ ++GTV++ +L GS W E+D E LG
Sbjct: 6 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK- 62
Query: 106 SGDPYTLHTNVFTNGKGDREQQF-HLWFDPSA--AFHTYSILWNPQRIVFFVDGTPIREL 162
+P + +N+ T G ++ H P+A AFHTY + W P + + VDG +R+
Sbjct: 63 --NPGSFQSNIITGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 120
Query: 163 KNSE 166
+ +
Sbjct: 121 EGGQ 124
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 52 SGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 105
SG+ + E YGK + ++K+ ++GTV++ +L GS W E+D E LG
Sbjct: 5 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK- 61
Query: 106 SGDPYTLHTNVFTNGKG-DREQQFHLWFDPSA--AFHTYSILWNPQRIVFFVDGTPIREL 162
+P + +N+ T G + + H P+A AFHTY + W P + + VDG +R+
Sbjct: 62 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 119
Query: 163 KNSE 166
+ +
Sbjct: 120 EGGQ 123
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 52 SGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 105
SG+ + E YGK + ++K+ ++GTV++ L GS W E+D E LG
Sbjct: 6 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMILYQNGSEIADGRPWVEVDIEVLGK- 62
Query: 106 SGDPYTLHTNVFTNGKG-DREQQFHLWFDPSA--AFHTYSILWNPQRIVFFVDGTPIREL 162
+P + +N+ T G + + H P+A AFHTY + W P + + VDG +R+
Sbjct: 63 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 120
Query: 163 KNSE 166
+ +
Sbjct: 121 EGGQ 124
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 46 LSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDF 99
+S SG+ + E YGK + + K ++GTV++ +L GS W E+D
Sbjct: 2 VSAKDFSGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDI 59
Query: 100 EFLGNLSGDPYTLHTNVFTNGKG-DREQQFHLWFDPSA--AFHTYSILWNPQRIVFFVDG 156
E LG +P + +N+ T G + + H P+A AFHTY + W P + + VDG
Sbjct: 60 EVLGK---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 157 TPIRELKNSE 166
+R+ + +
Sbjct: 117 QEVRKTEGGQ 126
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 52 SGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 105
SG+ + E YGK + + K ++GTV++ +L GS W E+D E LG
Sbjct: 5 SGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK- 61
Query: 106 SGDPYTLHTNVFTNGKG-DREQQFHLWFDPSA--AFHTYSILWNPQRIVFFVDGTPIREL 162
+P + +N+ T G + + H P+A AFHTY + W P + + VDG +R+
Sbjct: 62 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 119
Query: 163 KNSE 166
+ +
Sbjct: 120 EGGQ 123
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 122 GDREQQFHLWFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIY 181
G E+ L FD S FHTY+ W P I ++VDG LK++ + +P + P +I
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIM 54
Query: 182 SSLWNA---DDW 190
+LWN DDW
Sbjct: 55 MNLWNGTGVDDW 66
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 26 FDITWGDGRAKILNNGQL---LTLS-LDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGT 81
F+ TW N+G+L LT S +K + ++S N Y YG ++ +K P + G
Sbjct: 118 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 175
Query: 82 VTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNG 120
V++++ + G+ WDEID EFLG D + N +TNG
Sbjct: 176 VSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNG 214
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 81/177 (45%), Gaps = 21/177 (11%)
Query: 32 DGRAK--ILNNGQLLTLSLDKASGSGF-------QSKNEYLYGKIDMQLKLVPGNSAGTV 82
D RA + NG L+ + +A G G+ Q+K + YG+++ +++ G G
Sbjct: 47 DSRANSALDGNGNLVITARQEADG-GYTSARLTTQNKVQPQYGRVEASIQIPRGQ--GIW 103
Query: 83 TAYYLKS---PGSTW-DEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPSA-- 136
A+++ P + W D + + + N+ +P+ +H ++ G E + P
Sbjct: 104 PAFWMLGADFPNTPWPDSGEIDIMENIGREPHLVHGSLHGPGYFGGEPLTGSYMHPQGWS 163
Query: 137 ---AFHTYSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNADDW 190
FHT+++ W P I + VDG + ++++ G P+ +QP + ++ DW
Sbjct: 164 FADTFHTFAVDWRPGSITWSVDGVAYQTYTSADTRGNPWVFDQPFFMILNVAVGGDW 220
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 57 QSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKS---PGSTW---DEIDFEFLGNLSGDPY 110
Q K + YG+I+ ++++ G G A+++ PG+ W EID + N+ +P+
Sbjct: 76 QGKYQPQYGRIEARIQIPRGQ--GIWPAFWMLGGSFPGTPWPSSGEIDI--MENVGFEPH 131
Query: 111 TLHTNVFTNGKGDREQQFHLWFDPSA-----AFHTYSILWNPQRIVFFVDG 156
+H V G ++ P FHT+++ W P I +FVDG
Sbjct: 132 RVHGTVHGPGYSGGSGITGMYQHPQGWSFADTFHTFAVDWKPGEITWFVDG 182
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 96 EIDF-EFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPSAA------FHTYSILWNPQ 148
EID EFLG+ +P T+H V G + + P FH + I+W P
Sbjct: 137 EIDIMEFLGH---EPRTIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPD 193
Query: 149 RIVFFVDGTPIREL--KNSESIGVPFPKNQPMRIYSSL 184
+I ++VDGT E+ + E++G + ++P I +L
Sbjct: 194 KIKWYVDGTFYHEVTKEQVEAMGYEWVFDKPFYIILNL 231
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 35/193 (18%)
Query: 34 RAKILN---NGQLLTLSLDKASGSGFQ---------SKNEYLYGKIDMQLKLVPGNSAGT 81
RA+I N G +L + + S G + K + YG+ +++ +L G GT
Sbjct: 43 RARIENARVGGGVLIIEARRESYEGREYTSARLVTRGKASWTYGRFEIRARLPSGR--GT 100
Query: 82 VTAYYL----KSPGSTW--DEIDFEFLGNLSGDPYTLHTNVFTNGKG-----DREQQFHL 130
A ++ ++ GS + D + + ++ +P +H V T R +
Sbjct: 101 WPAIWMLPDRQTYGSAYWPDNGEIDIAEHVGFNPDVVHGTVHTKAYNHLLGTQRGGSIRV 160
Query: 131 WFDPSAA--FHTYSILWNPQRIVFFVDGT-----PIRELKNSESIGVPFPKNQPMRIYSS 183
P+A FH Y+I W P+ I +FVD + P L N E+ +P +QP + +
Sbjct: 161 ---PTARTDFHVYAIEWTPEEIRWFVDDSLYYRFPNERLTNPEADWRHWPFDQPFHLIMN 217
Query: 184 LWNADDWATRGGL 196
+ W + G+
Sbjct: 218 IAVGGTWGGQQGV 230
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 57/147 (38%), Gaps = 22/147 (14%)
Query: 39 NNGQLLTLSLDKASGSGFQSKNEYLYGKIDMQLK---LVPGNSAG-----TVTAYYLKSP 90
N Q+ L SG +S+ YG + ++K PG S T+ K
Sbjct: 73 NQQQVANYPLYYTSGVA-KSRATGNYGYYEARIKGASTFPGVSPAFWXYSTIDRSLTKEG 131
Query: 91 GSTWDEIDFEFLGNLSG---DPYTLHTNVFTNGK------GDREQQ----FHLWFDPSAA 137
+ EID L S + LH V NGK G Q +HL FDP
Sbjct: 132 DVQYSEIDVVELTQKSAVRESDHDLHNIVVKNGKPTWXRPGSFPQTNHNGYHLPFDPRND 191
Query: 138 FHTYSILWNPQRIVFFVDGTPIRELKN 164
FHTY + +I ++VDG + E N
Sbjct: 192 FHTYGVNVTKDKITWYVDGEIVGEKDN 218
>pdb|3AZX|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZX|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZZ|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3B00|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B01|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
Length = 272
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 8/118 (6%)
Query: 57 QSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGS----TWDEIDF-EFLGNLSGDPYT 111
+ K E YGKI+++ KL G + G T EID E LG+ + Y
Sbjct: 89 EGKFEIKYGKIEIRAKLPKGKGIWPALWMLGNNIGEVGWPTCGEIDIMEMLGHDTRTVYG 148
Query: 112 LHTNVFTNGKGDREQQFHL---WFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSE 166
+G +HL D S FH +SI W+ + ++VDG L E
Sbjct: 149 TAHGPGYSGGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVDGQLYHVLSKDE 206
>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
Length = 267
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 8/118 (6%)
Query: 57 QSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGS----TWDEIDF-EFLGNLSGDPYT 111
+ K E YGKI+++ KL G + G T EID E LG+ + Y
Sbjct: 97 EGKFEIKYGKIEIRAKLPKGKGIWPALWMLGNNIGEVGWPTCGEIDIMEMLGHDTRTVYG 156
Query: 112 LHTNVFTNGKGDREQQFHL---WFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSE 166
+G +HL D S FH +SI W+ + ++VDG L E
Sbjct: 157 TAHGPGYSGGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVDGQLYHVLSKDE 214
>pdb|2KSN|A Chain A, Solution Structure Of The N-Terminal Domain Of Dc-UbpUBTD2
Length = 137
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 163 KNSESIGVPFPKNQPMRIYSSLWNADDWATRGGL-VKTD--WTHAPFTASYRNFKANNAC 219
+NSE GV +NQP++ W +D T G L K D W AP +
Sbjct: 5 ENSEGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKE------- 57
Query: 220 VWSNGKSSCASTSFRSRNSWLSQEL 244
+W K+ A+ +F S + L+Q +
Sbjct: 58 IWDALKA--AAHAFESNDHELAQAI 80
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 55 GFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHT 114
GF ++ E L ++ ++ P +TA+Y + G DE + E+L ++ D
Sbjct: 144 GFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYL-KIAQDLEMYGV 202
Query: 115 NVFT--NGKG 122
N FT N KG
Sbjct: 203 NYFTIRNKKG 212
>pdb|1UPS|A Chain A, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
pdb|1UPS|B Chain B, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
Length = 420
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 133 DPSAAFHTYSILWNPQRIVFFVD 155
DP++ +H Y++ W P + F+ D
Sbjct: 209 DPTSEYHIYAMEWTPTALKFYYD 231
>pdb|4GS5|A Chain A, The Crystal Structure Of Acyl-Coa Synthetase
(Amp-Forming)AMP-Acid Ligase Ii-Like Protein From
Dyadobacter Fermentans Dsm 18053
Length = 358
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 216 NNACVWSNGKSSCASTSFRSRNSWLSQELD 245
+NA +W+ GK+ C T R RN + +Q D
Sbjct: 1 SNAXIWTTGKTLC-KTQKRPRNPYFAQAYD 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,555,321
Number of Sequences: 62578
Number of extensions: 423062
Number of successful extensions: 939
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 39
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)