Query 023431
Match_columns 282
No_of_seqs 280 out of 1778
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:58:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023431.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023431hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 6.8E-84 1.5E-88 589.8 34.5 278 1-282 1-289 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 1.8E-81 3.8E-86 570.0 32.8 256 19-279 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 1.8E-43 3.8E-48 311.3 25.2 177 27-217 11-201 (203)
4 cd02175 GH16_lichenase lichena 100.0 2.9E-38 6.2E-43 279.5 25.2 172 28-216 27-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 1.3E-35 2.7E-40 255.6 20.3 174 24-214 3-185 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 2.1E-33 4.5E-38 246.1 24.1 172 27-216 24-210 (210)
7 cd02178 GH16_beta_agarase Beta 100.0 2.4E-33 5.1E-38 255.2 21.8 178 31-216 56-257 (258)
8 cd08023 GH16_laminarinase_like 100.0 7.3E-33 1.6E-37 247.8 22.6 178 28-216 33-235 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 1.4E-30 3E-35 238.1 21.6 170 32-216 43-268 (269)
10 cd02180 GH16_fungal_KRE6_gluca 100.0 1.2E-30 2.5E-35 241.3 19.6 182 28-216 36-294 (295)
11 cd02182 GH16_Strep_laminarinas 100.0 3E-30 6.4E-35 235.0 20.9 180 29-216 42-258 (259)
12 cd08024 GH16_CCF Coelomic cyto 100.0 1.1E-28 2.3E-33 232.0 19.1 137 53-191 101-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 4.6E-28 1E-32 226.8 18.3 134 53-188 98-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 1E-24 2.2E-29 206.2 19.0 157 26-191 72-242 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 1.3E-20 2.8E-25 130.6 4.1 44 236-279 5-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.7 3E-16 6.6E-21 152.7 14.7 189 31-230 159-464 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.6 1.9E-14 4.1E-19 132.4 13.9 151 35-191 44-251 (293)
18 PF06439 DUF1080: Domain of Un 94.3 0.5 1.1E-05 39.9 10.0 121 38-166 28-157 (185)
19 smart00560 LamGL LamG-like jel 93.8 3 6.6E-05 33.7 14.3 69 134-220 59-129 (133)
20 PF09264 Sial-lect-inser: Vibr 93.3 0.82 1.8E-05 39.9 9.4 101 50-163 15-121 (198)
21 PF13385 Laminin_G_3: Concanav 93.2 2.6 5.7E-05 33.3 12.0 65 135-217 84-148 (157)
22 smart00210 TSPN Thrombospondin 90.6 5 0.00011 34.5 11.4 88 66-163 55-144 (184)
23 PF10287 DUF2401: Putative TOS 88.6 1.9 4E-05 39.0 7.3 77 66-148 102-207 (235)
24 cd00110 LamG Laminin G domain; 81.2 25 0.00055 27.9 15.9 86 63-162 20-106 (151)
25 PF14099 Polysacc_lyase: Polys 76.6 42 0.00091 29.2 11.0 75 129-215 145-224 (224)
26 smart00159 PTX Pentraxin / C-r 74.9 57 0.0012 28.4 17.4 73 134-217 88-162 (206)
27 cd00152 PTX Pentraxins are pla 67.6 82 0.0018 27.2 17.6 73 134-217 88-162 (201)
28 PF09224 DUF1961: Domain of un 66.1 30 0.00065 31.0 7.4 134 56-215 54-218 (218)
29 PF02973 Sialidase: Sialidase, 55.9 1.4E+02 0.0031 26.1 12.9 133 60-217 30-174 (190)
30 smart00282 LamG Laminin G doma 49.8 76 0.0016 24.9 6.8 27 135-161 61-87 (135)
31 KOG1834 Calsyntenin [Extracell 47.8 22 0.00048 36.9 3.9 52 135-191 441-492 (952)
32 PF02210 Laminin_G_2: Laminin 45.4 1.3E+02 0.0029 22.7 9.8 75 135-217 53-127 (128)
33 PF11948 DUF3465: Protein of u 35.9 1.4E+02 0.003 24.7 6.1 24 32-55 34-57 (131)
34 cd06526 metazoan_ACD Alpha-cry 27.6 1.3E+02 0.0028 22.0 4.5 52 31-85 19-70 (83)
35 cd06482 ACD_HspB10 Alpha cryst 25.4 1.1E+02 0.0023 23.3 3.6 45 32-76 21-65 (87)
36 cd00070 GLECT Galectin/galacto 24.9 2.3E+02 0.005 22.4 5.8 47 117-164 58-105 (127)
37 cd06470 ACD_IbpA-B_like Alpha- 24.7 1.2E+02 0.0026 22.6 3.9 45 31-76 23-71 (90)
38 PF07691 PA14: PA14 domain; I 21.6 1.3E+02 0.0029 23.7 3.8 29 134-163 57-85 (145)
39 PF06832 BiPBP_C: Penicillin-B 21.4 1.2E+02 0.0026 22.4 3.3 34 149-184 44-77 (89)
40 PF12248 Methyltransf_FA: Farn 21.0 2.8E+02 0.006 21.3 5.3 31 134-164 50-82 (102)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=6.8e-84 Score=589.80 Aligned_cols=278 Identities=53% Similarity=1.000 Sum_probs=250.9
Q ss_pred ChhHHHHHHHHHhhhhc-----cccccccCceeeecCCCeEEeCCCcEEEEEEeCCCcCeEEEccceEeEEEEEEEEecC
Q 023431 1 MASMLHLFLVLGTLMVA-----SAGSFYKDFDITWGDGRAKILNNGQLLTLSLDKASGSGFQSKNEYLYGKIDMQLKLVP 75 (282)
Q Consensus 1 ~a~~~~~~~~~~~~~~~-----~~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~sGs~i~Sk~~~~yG~~eariKlp~ 75 (282)
||+++.+|+.+.++.++ ...+|.++|.++|+.+|+.+.++|..|+|+||+.+|++|+||+.|+||+||||||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~ 80 (291)
T PLN03161 1 MASLKTLLVALFAALAAFDRSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVP 80 (291)
T ss_pred ChhHHHHHHHHHHHHHhcCCCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCC
Confidence 78886655554444333 3567999999999999999988888899999999999999999999999999999999
Q ss_pred CCCCceEEEEEeecCCCCCCeeEEEeCCCCCCCceEEEeeeecCCCCCceeeEeeCCCCCCCcEEEEEEEecCcEEEEEC
Q 023431 76 GNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPSAAFHTYSILWNPQRIVFFVD 155 (282)
Q Consensus 76 g~s~G~v~AFwl~~~~~~~~EIDiE~lG~~~g~p~~~~tN~~~~g~g~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVD 155 (282)
|+++|+||||||++.++.+|||||||||+++++++++|||+|.+|.+++++++.++||++++||+|+|+|+|++|+||||
T Consensus 81 G~saG~v~AFwl~s~~~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVD 160 (291)
T PLN03161 81 GNSAGTVTAYYLSSTGSRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVD 160 (291)
T ss_pred CCCCCeEEEEEecCCCCCCCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEEC
Confidence 88899999999999777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEEeeecccCCC--CCCCCCCCc
Q 023431 156 GTPIRELKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFKANNACVWSNG--KSSCASTSF 233 (282)
Q Consensus 156 G~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~g~~Wat~GG~~~~d~~~~Pf~~~~~~~~v~~~c~~~~~--~~~c~~~~~ 233 (282)
|++||++++.+..+.+||+++||+|++|||+|++|||+||++|+||+++||+|.|++|++++ |.+.++ ...|...
T Consensus 161 G~~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~-C~~~~~~~~~~c~~~-- 237 (291)
T PLN03161 161 GTPIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARA-CKWNGPVSIKQCADP-- 237 (291)
T ss_pred CEEEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEe-eccCCCCCccccCCC--
Confidence 99999999887778889988899999999999999999999999999999999999999999 987653 2468641
Q ss_pred CCCCcccc----cCCCHHHHHHHHHHhhcCeEEecccCCCCCCCCCCCCCcCC
Q 023431 234 RSRNSWLS----QELDSTSQNRLKWVQKNYMIYNYCTDTKRFPRGIPKECRNS 282 (282)
Q Consensus 234 ~~~~~~~~----~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~~~~ec~~~ 282 (282)
+...||+ ++|+++|+++|+|||+||||||||+|++|||+++||||.++
T Consensus 238 -~~~~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~ 289 (291)
T PLN03161 238 -TPSNWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKP 289 (291)
T ss_pred -CccccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCC
Confidence 1245776 47999999999999999999999999999998789999764
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=1.8e-81 Score=569.98 Aligned_cols=256 Identities=55% Similarity=1.100 Sum_probs=238.9
Q ss_pred ccccccCceeeecCCCeEEeCCCcEEEEEEeCCCcCeEEEccceEeEEEEEEEEecCCCCCceEEEEEeecC-CCCCCee
Q 023431 19 AGSFYKDFDITWGDGRAKILNNGQLLTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSP-GSTWDEI 97 (282)
Q Consensus 19 ~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~sGs~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~-~~~~~EI 97 (282)
+..|.++|.++|+++||++.++|+.|+|+||+.+|++|+||..|+||+||||||+|+|+++|+||||||+++ ||.++||
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~EI 82 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDEI 82 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCeE
Confidence 457999999999999999998898999999999999999999999999999999999888899999999998 5899999
Q ss_pred EEEeCCCCCCCceEEEeeeecCCCCCceeeEeeCCCCCCCcEEEEEEEecCcEEEEECCeEEEEEecCCCCCCCCCCCCC
Q 023431 98 DFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQP 177 (282)
Q Consensus 98 DiE~lG~~~g~p~~~~tN~~~~g~g~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 177 (282)
|||++|+++|+|+++|||+|.+|.+++++++.++||++++||+|+|+|+|++|+|||||++||++++.+..+.+||+++|
T Consensus 83 D~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 162 (263)
T cd02176 83 DFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQP 162 (263)
T ss_pred EEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777889998899
Q ss_pred cEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEEeeecccCCCCCCCCCCCcCCCCcccc----cCCCHHHHHHHH
Q 023431 178 MRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFKANNACVWSNGKSSCASTSFRSRNSWLS----QELDSTSQNRLK 253 (282)
Q Consensus 178 m~l~lnlw~g~~Wat~GG~~~~d~~~~Pf~~~~~~~~v~~~c~~~~~~~~c~~~~~~~~~~~~~----~~l~~~~~~~~~ 253 (282)
|+|++|||+||+|||+||++|+||+++||+|.|++|+|.+ |.++++...|... ....||+ ++|+++|+++|+
T Consensus 163 m~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~-c~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~ 238 (263)
T cd02176 163 MGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDG-CVVDPGDSFSSCS---CTEDWWNGSTYQQLSANQQRAME 238 (263)
T ss_pred EEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEee-eecCCCCccccCC---CccccccccccccCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999 9987655556541 1134766 489999999999
Q ss_pred HHhhcCeEEecccCCCCCCCCCCCCC
Q 023431 254 WVQKNYMIYNYCTDTKRFPRGIPKEC 279 (282)
Q Consensus 254 ~~~~~~~~y~yc~d~~r~~~~~~~ec 279 (282)
|||+||||||||+|++|||. +||||
T Consensus 239 ~~~~~~~~y~yC~d~~r~~~-~p~ec 263 (263)
T cd02176 239 WVRRNYMVYDYCDDRKRYPV-PPPEC 263 (263)
T ss_pred HHHHCCEEEecCCCCCcCCC-CcCCC
Confidence 99999999999999999995 89999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=1.8e-43 Score=311.32 Aligned_cols=177 Identities=33% Similarity=0.667 Sum_probs=153.7
Q ss_pred eeeecCCCeEEeCCCcEEEEEEeCC-CcCeEEEccceEeEEEEEEEEecCCCCCceEEEEEeecCCCCCCeeEEEeCCCC
Q 023431 27 DITWGDGRAKILNNGQLLTLSLDKA-SGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNL 105 (282)
Q Consensus 27 ~~~w~~~nv~~~~~G~~l~L~ld~~-sGs~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~~~~~EIDiE~lG~~ 105 (282)
..+...++|.+.++| |.|+|++. +|++|.|++.|+||+||||||+|.+ +|+||||||+++ .++|||||++|+
T Consensus 11 ~~~~~~~~~~~~~~~--~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~--~~gEIDIE~~G~- 83 (203)
T cd02183 11 DWTVTSGTVDYDDDG--ASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD--DLDEIDWEWVGG- 83 (203)
T ss_pred ccEecCCcEeECCCe--EEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC--CCCEEEEEecCC-
Confidence 345678899986433 88999776 7999999999999999999999998 899999999988 679999999997
Q ss_pred CCCceEEEeeeecCCCC---CceeeEeeCCCCCCCcEEEEEEEecCcEEEEECCeEEEEEecCCC-CCCCCCCCCCcEEE
Q 023431 106 SGDPYTLHTNVFTNGKG---DREQQFHLWFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSES-IGVPFPKNQPMRIY 181 (282)
Q Consensus 106 ~g~p~~~~tN~~~~g~g---~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~-~g~~~P~~~Pm~l~ 181 (282)
++..+|+|++.++.. ++.+.+.+.++++++||+|+|+|+|++|+|||||++++++++.+. .+..||. +||+|+
T Consensus 84 --~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~-~P~~l~ 160 (203)
T cd02183 84 --DLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQ-TPMRLQ 160 (203)
T ss_pred --CCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCC-CCcEEE
Confidence 456899999987654 455677788888899999999999999999999999999987542 3567996 999999
Q ss_pred EeeeeCCC---------ccCCCCccccCCCCCCeEEEEeEEEEee
Q 023431 182 SSLWNADD---------WATRGGLVKTDWTHAPFTASYRNFKANN 217 (282)
Q Consensus 182 lnlw~g~~---------Wat~GG~~~~d~~~~Pf~~~~~~~~v~~ 217 (282)
+|+|+||+ || ||+ +||+.+||.|.|++|+|..
T Consensus 161 ln~W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v~~ 201 (203)
T cd02183 161 IGIWAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTVTD 201 (203)
T ss_pred EEEecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEEEe
Confidence 99999985 99 775 6999999999999999864
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=2.9e-38 Score=279.53 Aligned_cols=172 Identities=33% Similarity=0.667 Sum_probs=147.0
Q ss_pred eeecCCCeEEeCCCcEEEEEEeCC-------CcCeEEEccceEeEEEEEEEEecCCCCCceEEEEEeecC---CCCCCee
Q 023431 28 ITWGDGRAKILNNGQLLTLSLDKA-------SGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSP---GSTWDEI 97 (282)
Q Consensus 28 ~~w~~~nv~~~~~G~~l~L~ld~~-------sGs~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~---~~~~~EI 97 (282)
.+|.++||.+. +|. |+|++.+. ++++|.|+.+|+||+||||||+|.+ +|+|+||||++. +..++||
T Consensus 27 ~~~~~~nv~v~-~g~-L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~EI 102 (212)
T cd02175 27 CTWSADNVEFS-DGG-LALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHDEI 102 (212)
T ss_pred eeEccccEEEE-CCe-EEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCCEE
Confidence 57889999996 665 88888543 4789999999999999999999988 899999999974 3457999
Q ss_pred EEEeCCCCCCCceEEEeeeecCCCCCceeeEeeCCCCCCCcEEEEEEEecCcEEEEECCeEEEEEecCCCCCCCCCCCCC
Q 023431 98 DFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQP 177 (282)
Q Consensus 98 DiE~lG~~~g~p~~~~tN~~~~g~g~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 177 (282)
|||++|++. ..+|+|+|.++.++.+..+.+.+++.++||+|+|+|+|++|+|||||+++++++..+ ..+|. +|
T Consensus 103 DiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p~-~p 175 (212)
T cd02175 103 DIEFLGKDT---TKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIPD-TP 175 (212)
T ss_pred EEEEccCCC---CEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCCC-CC
Confidence 999999753 468899988877766667778889999999999999999999999999999998653 35786 99
Q ss_pred cEEEEeeeeCC---CccCCCCccccCCCCCCeEEEEeEEEEe
Q 023431 178 MRIYSSLWNAD---DWATRGGLVKTDWTHAPFTASYRNFKAN 216 (282)
Q Consensus 178 m~l~lnlw~g~---~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 216 (282)
|+|++|+|.|+ +|+ |. +|. .+|+.|+||+||+.
T Consensus 176 ~~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 176 GKIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred cEEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 99999999985 598 53 466 88999999999985
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=1.3e-35 Score=255.58 Aligned_cols=174 Identities=37% Similarity=0.697 Sum_probs=149.4
Q ss_pred cCceeeecCCCeEEeCCCcEEEEEEeC-----CCcCeEEEccceEeEEEEEEEEecCCCCCceEEEEEeecC--CCCCCe
Q 023431 24 KDFDITWGDGRAKILNNGQLLTLSLDK-----ASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSP--GSTWDE 96 (282)
Q Consensus 24 ~~f~~~w~~~nv~~~~~G~~l~L~ld~-----~sGs~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~--~~~~~E 96 (282)
+.++++|+++||.+. +|..|.|++++ .++++|+|+..++||+||+|||++.+ +|+++||||.+. |+.++|
T Consensus 3 ~~~~~~~~~~nv~~~-~g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~E 79 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVE-DGGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGGE 79 (185)
T ss_dssp CTEEEEETCCGEEEE-TTSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTEE
T ss_pred CceEEeeCCCcEEEc-CCCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchhh
Confidence 578899999999995 44449999976 57899999999999999999998887 899999999764 689999
Q ss_pred eEEEeCCCCCCCceEEEeeeecCCCCCc--eeeEeeCCCCCCCcEEEEEEEecCcEEEEECCeEEEEEecCCCCCCCCCC
Q 023431 97 IDFEFLGNLSGDPYTLHTNVFTNGKGDR--EQQFHLWFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSESIGVPFPK 174 (282)
Q Consensus 97 IDiE~lG~~~g~p~~~~tN~~~~g~g~~--~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~ 174 (282)
||||++|++.. .+++|+|..+.+.. +.++.+..++.++||+|+|+|+|++|+|||||++++++......+.++|.
T Consensus 80 IDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~ 156 (185)
T PF00722_consen 80 IDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPF 156 (185)
T ss_dssp EEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSE
T ss_pred hhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcc
Confidence 99999998544 59999999888765 56677788999999999999999999999999999999987654446887
Q ss_pred CCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEE
Q 023431 175 NQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFK 214 (282)
Q Consensus 175 ~~Pm~l~lnlw~g~~Wat~GG~~~~d~~~~Pf~~~~~~~~ 214 (282)
..||+|.+++|.|++|++..| .|++||||
T Consensus 157 ~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 157 STPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred cceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 789999999999998885444 57777775
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=2.1e-33 Score=246.12 Aligned_cols=172 Identities=37% Similarity=0.614 Sum_probs=142.9
Q ss_pred eeeecCCCeEEeCCCcEEEEEEeCC------CcCeEEE-ccceEeEEEEEEEEecCCCCCceEEEEEeecCC---CCCCe
Q 023431 27 DITWGDGRAKILNNGQLLTLSLDKA------SGSGFQS-KNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPG---STWDE 96 (282)
Q Consensus 27 ~~~w~~~nv~~~~~G~~l~L~ld~~------sGs~i~S-k~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~---~~~~E 96 (282)
...|.++||.+.++|. |.|++.+. ++++|.| ++.|+||+||+|||++.+ .|+|+||||++.. +..+|
T Consensus 24 ~~~~~~~nv~~~~~G~-L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~E 100 (210)
T cd00413 24 NMTNSPNNVYVENDGG-LTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGE 100 (210)
T ss_pred eEEECccCEEEeCCCe-EEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCe
Confidence 3578899999976576 88888543 5689999 999999999999999998 8999999999983 67999
Q ss_pred eEEEeCCCCCCCceEEEeeeecCCCC-----CceeeEeeCCCCCCCcEEEEEEEecCcEEEEECCeEEEEEecCCCCCCC
Q 023431 97 IDFEFLGNLSGDPYTLHTNVFTNGKG-----DREQQFHLWFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSESIGVP 171 (282)
Q Consensus 97 IDiE~lG~~~g~p~~~~tN~~~~g~g-----~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~ 171 (282)
||||++|++ +..+++++|..+.+ .....+.+.+++.++||+|+|+|+|++|+|||||++++++.+.
T Consensus 101 IDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------ 171 (210)
T cd00413 101 IDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------ 171 (210)
T ss_pred EEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------
Confidence 999999975 34688888876543 2334555666678999999999999999999999999998753
Q ss_pred CCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEEe
Q 023431 172 FPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFKAN 216 (282)
Q Consensus 172 ~P~~~Pm~l~lnlw~g~~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 216 (282)
.|. +||+|+||+|.+++|+ +. .+....|..|.|++|||.
T Consensus 172 ~p~-~p~~i~ln~~~~~~~~--~~---~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 172 VPD-DPMNIILNLWSDGGWW--WG---GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred CCC-CCcEEEEEEEECCCCc--cc---CCCCCCCcEEEEEEEEEC
Confidence 566 9999999999999988 22 244678999999999973
No 7
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=2.4e-33 Score=255.19 Aligned_cols=178 Identities=21% Similarity=0.273 Sum_probs=136.1
Q ss_pred cCCCeEEeCCCcEEEEEEeCC-----------CcCeEEEccceEeEEEEEEEEecCCCCCceEEEEEeecC-CCCCCeeE
Q 023431 31 GDGRAKILNNGQLLTLSLDKA-----------SGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSP-GSTWDEID 98 (282)
Q Consensus 31 ~~~nv~~~~~G~~l~L~ld~~-----------sGs~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~-~~~~~EID 98 (282)
.++||.+ .+|. |.|++.+. ++++|.||+.|+|||||||||+|.+ . .+|||||++. ++.++|||
T Consensus 56 ~~~nv~v-~~G~-L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~~~~~gEID 130 (258)
T cd02178 56 SADNVSV-EDGN-LVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDTKDSTTEID 130 (258)
T ss_pred ccCCeEE-ECCE-EEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCCCCCCCcEE
Confidence 4678887 5787 88877433 3578999999999999999999987 3 5799999997 67899999
Q ss_pred E-EeCCCCC--CCceEEEeeeecCCCC-----Cc---eeeEeeCCCCCCCcEEEEEEEe-cCcEEEEECCeEEEEEecCC
Q 023431 99 F-EFLGNLS--GDPYTLHTNVFTNGKG-----DR---EQQFHLWFDPSAAFHTYSILWN-PQRIVFFVDGTPIRELKNSE 166 (282)
Q Consensus 99 i-E~lG~~~--g~p~~~~tN~~~~g~g-----~~---~~~~~l~~d~~~dfHtY~i~Wt-p~~I~fyVDG~~vr~~~~~~ 166 (282)
| |++|+.. ..+..+|+++|..+.+ .+ ...+...++..++||+|+|+|+ |++|+|||||++++++++.+
T Consensus 131 I~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~ 210 (258)
T cd02178 131 ILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSE 210 (258)
T ss_pred hhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCcc
Confidence 8 9999763 2245788887643221 11 2234455667899999999999 99999999999999998754
Q ss_pred CCCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEEe
Q 023431 167 SIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFKAN 216 (282)
Q Consensus 167 ~~g~~~P~~~Pm~l~lnlw~g~~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 216 (282)
. ...+|+++||+|+||+++|+ |+...+.. ..-...|..|.||+|||.
T Consensus 211 ~-~~~~~f~~p~~liln~avg~-w~g~~~~~-~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 211 I-TDGTGFDQPMYIIIDTETYD-WRGEPTDE-ELADDSKNTFYVDYVRVY 257 (258)
T ss_pred c-CcCCcCCCCeEEEEEecccc-CCCCCCcc-ccCCCCCCeEEEEEEEEe
Confidence 3 33467789999999999998 98211121 122346999999999985
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=7.3e-33 Score=247.81 Aligned_cols=178 Identities=26% Similarity=0.461 Sum_probs=141.8
Q ss_pred eeecCCCeEEeCCCcEEEEEEeCC----------CcCeEEE--ccceEeEEEEEEEEecCCCCCceEEEEEeecC-----
Q 023431 28 ITWGDGRAKILNNGQLLTLSLDKA----------SGSGFQS--KNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSP----- 90 (282)
Q Consensus 28 ~~w~~~nv~~~~~G~~l~L~ld~~----------sGs~i~S--k~~~~yG~~eariKlp~g~s~G~v~AFwl~~~----- 90 (282)
..+.++|+.+ .+|. |.|+.++. ++++|.| ++.|+|||||||||+|.+ +|++|||||+++
T Consensus 33 ~~~~~~nv~v-~~G~-L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~ 108 (235)
T cd08023 33 YTYRPENAYV-EDGN-LVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYV 108 (235)
T ss_pred EeCCCCCeEE-ECCE-EEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCC
Confidence 3567899988 4776 78877432 2568999 899999999999999998 899999999986
Q ss_pred -CCCCCeeEE-EeCCCCCCCceEEEeeeecCCCC----CceeeEeeCC-CCCCCcEEEEEEEecCcEEEEECCeEEEEEe
Q 023431 91 -GSTWDEIDF-EFLGNLSGDPYTLHTNVFTNGKG----DREQQFHLWF-DPSAAFHTYSILWNPQRIVFFVDGTPIRELK 163 (282)
Q Consensus 91 -~~~~~EIDi-E~lG~~~g~p~~~~tN~~~~g~g----~~~~~~~l~~-d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 163 (282)
|+.++|||| |++|+. +..+++++|..+.. .....+.... +..++||+|+++|+|++|+|||||+++++++
T Consensus 109 ~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~ 185 (235)
T cd08023 109 GWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYT 185 (235)
T ss_pred CCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEc
Confidence 367899998 999985 44688888877653 2233455544 6789999999999999999999999999998
Q ss_pred cCCCCC-CCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEEe
Q 023431 164 NSESIG-VPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFKAN 216 (282)
Q Consensus 164 ~~~~~g-~~~P~~~Pm~l~lnlw~g~~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 216 (282)
+..... ..+|.++||+|+||++++++|+ |.. ......|..|.||+|||.
T Consensus 186 ~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~~-~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 186 NPNTDNGGQWPFDQPFYLILNLAVGGNWP---GPP-DDDTPFPATMEVDYVRVY 235 (235)
T ss_pred ccccCCcccCCCCCCcEEEEEEEEcCCCC---CCC-CCCCCCCCEEEEEEEEEC
Confidence 764321 2356669999999999999998 431 233567999999999983
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.97 E-value=1.4e-30 Score=238.14 Aligned_cols=170 Identities=27% Similarity=0.369 Sum_probs=127.4
Q ss_pred CCCeEEeCCCcEEEEEEeCC-------------------CcCeEEEccceEeEEEEEEEEecC-CCCCceEEEEEeecC-
Q 023431 32 DGRAKILNNGQLLTLSLDKA-------------------SGSGFQSKNEYLYGKIDMQLKLVP-GNSAGTVTAYYLKSP- 90 (282)
Q Consensus 32 ~~nv~~~~~G~~l~L~ld~~-------------------sGs~i~Sk~~~~yG~~eariKlp~-g~s~G~v~AFwl~~~- 90 (282)
++|+.+ .||. |+|++.+. +++.+.||.+|+|||||||||+++ + .|+||||||+++
T Consensus 43 ~~Nv~v-~dG~-L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVI-SNGI-LELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEE-eCCE-EEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 567777 6888 77776432 456889999999999999999865 5 799999999974
Q ss_pred --------CCCCCeeEE-EeCCCCC---CCc----eEEEeeeecCCCCC--c--------eeeEeeCCCCCCCcEEEEEE
Q 023431 91 --------GSTWDEIDF-EFLGNLS---GDP----YTLHTNVFTNGKGD--R--------EQQFHLWFDPSAAFHTYSIL 144 (282)
Q Consensus 91 --------~~~~~EIDi-E~lG~~~---g~p----~~~~tN~~~~g~g~--~--------~~~~~l~~d~~~dfHtY~i~ 144 (282)
||.++|||| |.+|... +++ ..+|++++.++.+. + .+.+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 678999999 8887531 222 35666665554331 1 12455778899999999999
Q ss_pred EecCcEEEEECCeEEEEEecCCCCCCCCCCCCCcEEEEeeeeCC---------CccCCCCccccCCCCCCeEEEEeEEEE
Q 023431 145 WNPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNAD---------DWATRGGLVKTDWTHAPFTASYRNFKA 215 (282)
Q Consensus 145 Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~g~---------~Wat~GG~~~~d~~~~Pf~~~~~~~~v 215 (282)
|+|++|+|||||++++++.+. +. +.||.|.+++-.+. .|+ |+. .+.+..|-.|+||+|||
T Consensus 199 W~~~~i~~yvDg~~~~~~~~~------~w-~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~--~~~~~fP~~m~VDyVRv 267 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKPNK------YW-HRPMNVTLSLGLRKPFVKFFDNKNNA--KAR--EKASDFPTSMYVDYVRV 267 (269)
T ss_pred EeCCEEEEEECCEEEEEEcCC------cc-ccccEEeeccccCcchhhhhccccCC--CCC--CccCcCCceEEEEEEEE
Confidence 999999999999999998742 23 37888888875432 344 333 24567899999999998
Q ss_pred e
Q 023431 216 N 216 (282)
Q Consensus 216 ~ 216 (282)
.
T Consensus 268 ~ 268 (269)
T cd02177 268 W 268 (269)
T ss_pred e
Confidence 5
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.97 E-value=1.2e-30 Score=241.30 Aligned_cols=182 Identities=20% Similarity=0.205 Sum_probs=126.8
Q ss_pred eeecCCCeEEeCCCcEEEEEEeC-------CCcCeEEE--ccceEeEEEEEEEEecCC-CCCceEEEEEeecC-------
Q 023431 28 ITWGDGRAKILNNGQLLTLSLDK-------ASGSGFQS--KNEYLYGKIDMQLKLVPG-NSAGTVTAYYLKSP------- 90 (282)
Q Consensus 28 ~~w~~~nv~~~~~G~~l~L~ld~-------~sGs~i~S--k~~~~yG~~eariKlp~g-~s~G~v~AFwl~~~------- 90 (282)
..+.++|+.+ .+|. |+|+..+ .++++|.| |+.|+||+||||||||.+ ...|+||||||+++
T Consensus 36 q~Y~~~nv~v-~~G~-L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~ 113 (295)
T cd02180 36 EWYDPDAVTT-INGS-LRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYL 113 (295)
T ss_pred EEecCcCeEe-cCCe-EEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeeccccccccccc
Confidence 3556789887 6888 7777643 25678999 788999999999999974 23799999999984
Q ss_pred ------CCC------CCeeEE-EeCCCCCC-Cce---EEE----------------eeeecC------C-CCCcee-eE-
Q 023431 91 ------GST------WDEIDF-EFLGNLSG-DPY---TLH----------------TNVFTN------G-KGDREQ-QF- 128 (282)
Q Consensus 91 ------~~~------~~EIDi-E~lG~~~g-~p~---~~~----------------tN~~~~------g-~g~~~~-~~- 128 (282)
||. .+|||| |.+|.+.. ... ++| ..+|.. . .++..+ ..
T Consensus 114 ~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 193 (295)
T cd02180 114 ATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAIS 193 (295)
T ss_pred ccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCccccccc
Confidence 664 499999 99985431 111 111 111211 0 011101 00
Q ss_pred ---eeCC----CCCCCcEEEEEEEec-----CcEEEEECCeEEEEEecCCCC------CCCCCCCCCcEEEEeeeeCCCc
Q 023431 129 ---HLWF----DPSAAFHTYSILWNP-----QRIVFFVDGTPIRELKNSESI------GVPFPKNQPMRIYSSLWNADDW 190 (282)
Q Consensus 129 ---~l~~----d~~~dfHtY~i~Wtp-----~~I~fyVDG~~vr~~~~~~~~------g~~~P~~~Pm~l~lnlw~g~~W 190 (282)
.+.. ...++||+|+|+|+| ++|+|||||+++++++..... ..++| ++||+||||+++||+|
T Consensus 194 ~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~-~~P~ylILNlAvGg~w 272 (295)
T cd02180 194 CVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIP-EEPMYIILNLGISSNF 272 (295)
T ss_pred cccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccC-CCCeEEEEEEEecccc
Confidence 1111 125789999999999 899999999999999864321 12345 4999999999999999
Q ss_pred cCCCCccccCCCCCCeEEEEeEEEEe
Q 023431 191 ATRGGLVKTDWTHAPFTASYRNFKAN 216 (282)
Q Consensus 191 at~GG~~~~d~~~~Pf~~~~~~~~v~ 216 (282)
+ |. +.+-...|..|+||+|||.
T Consensus 273 ~---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 273 Q---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred C---CC-CcccCCCCCEEEEEEEEEE
Confidence 7 42 2344567999999999996
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.97 E-value=3e-30 Score=234.97 Aligned_cols=180 Identities=13% Similarity=0.163 Sum_probs=125.9
Q ss_pred eecCCCeEEeCCCcEEEEEEeCC-----CcCeEEEccce--Ee----EEEEEEEEecCCC---CCceEEEEEeecC----
Q 023431 29 TWGDGRAKILNNGQLLTLSLDKA-----SGSGFQSKNEY--LY----GKIDMQLKLVPGN---SAGTVTAYYLKSP---- 90 (282)
Q Consensus 29 ~w~~~nv~~~~~G~~l~L~ld~~-----sGs~i~Sk~~~--~y----G~~eariKlp~g~---s~G~v~AFwl~~~---- 90 (282)
+++++|+.+..+|. |.|+..+. ++++|.|+.++ .| |+||||||+|.+. ..|+||||||++.
T Consensus 42 ~~~~~n~~v~~dG~-L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNGT-LQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCCe-EEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 56678999865887 77776433 45788987654 33 4899999999741 3699999999984
Q ss_pred ----CCCCCeeEE-EeCCCCCCCceEEEeeeecCC----CCCceeeEe-eCCCCCCCcEEEEEEEec-----CcEEEEEC
Q 023431 91 ----GSTWDEIDF-EFLGNLSGDPYTLHTNVFTNG----KGDREQQFH-LWFDPSAAFHTYSILWNP-----QRIVFFVD 155 (282)
Q Consensus 91 ----~~~~~EIDi-E~lG~~~g~p~~~~tN~~~~g----~g~~~~~~~-l~~d~~~dfHtY~i~Wtp-----~~I~fyVD 155 (282)
||..+|||| |..|... .+.+ .+|... ..+...... ....+.++||+|+++|++ ++|+||||
T Consensus 121 ~~~~WP~~GEIDImE~~~~~~---~~~~-t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvD 196 (259)
T cd02182 121 NGTNWPACGELDIMENVNGLS---TGYG-TLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLD 196 (259)
T ss_pred CCCCCCccceeeeeeccCCCC---ceEE-EEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEEC
Confidence 678899999 9998642 2333 344321 111111111 011234799999999997 99999999
Q ss_pred CeEEEEEecCCCC---CCCCCCCCCcEEEEeeeeCCCccCCCCccc-cCCCCCCeEEEEeEEEEe
Q 023431 156 GTPIRELKNSESI---GVPFPKNQPMRIYSSLWNADDWATRGGLVK-TDWTHAPFTASYRNFKAN 216 (282)
Q Consensus 156 G~~vr~~~~~~~~---g~~~P~~~Pm~l~lnlw~g~~Wat~GG~~~-~d~~~~Pf~~~~~~~~v~ 216 (282)
|+++++++..... ..+.|.++||+||||+++||+|+ |... ..-...|..|.||+|||.
T Consensus 197 G~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~---~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 197 GVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP---GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred CEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC---CCCCcccccCCCceEEEEEEEEe
Confidence 9999999864221 12234469999999999999998 3321 112346899999999985
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=1.1e-28 Score=231.99 Aligned_cols=137 Identities=20% Similarity=0.257 Sum_probs=104.8
Q ss_pred cCeEEE--ccceEeEEEEEEEEecCCCCCceEEEEEeecC------CCCCCeeEE-EeCCCCCCCc-------eEEEeee
Q 023431 53 GSGFQS--KNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSP------GSTWDEIDF-EFLGNLSGDP-------YTLHTNV 116 (282)
Q Consensus 53 Gs~i~S--k~~~~yG~~eariKlp~g~s~G~v~AFwl~~~------~~~~~EIDi-E~lG~~~g~p-------~~~~tN~ 116 (282)
+++|.| |+.|+|||||+|||||.+ .|+||||||++. ||..+|||| |..|+....+ ..++..+
T Consensus 101 Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tl 178 (330)
T cd08024 101 SARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTL 178 (330)
T ss_pred EEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEE
Confidence 466788 688999999999999999 799999999985 788999999 9999754221 2455666
Q ss_pred ecCCCCC----ce---eeEeeCCCCCCCcEEEEEEEecCcEEEEECCeEEEEEecCC-------------------CCCC
Q 023431 117 FTNGKGD----RE---QQFHLWFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSE-------------------SIGV 170 (282)
Q Consensus 117 ~~~g~g~----~~---~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~-------------------~~g~ 170 (282)
|...... +. .......+..++||+|+|+|+|++|+|||||+++++++... ..+.
T Consensus 179 H~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~ 258 (330)
T cd08024 179 HWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGK 258 (330)
T ss_pred EeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCc
Confidence 6432211 11 11122345678899999999999999999999999998521 1124
Q ss_pred CCCCCCCcEEEEeeeeCCCcc
Q 023431 171 PFPKNQPMRIYSSLWNADDWA 191 (282)
Q Consensus 171 ~~P~~~Pm~l~lnlw~g~~Wa 191 (282)
.+|+++|++|+|||++||.|.
T Consensus 259 ~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 259 MAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CCCCCCCEEEEEEEEecCCCC
Confidence 568999999999999999875
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=4.6e-28 Score=226.78 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=99.0
Q ss_pred cCeEEE--ccceEeEEEEEEEEecCCCCCceEEEEEeecC------C-CCCCeeEE-EeCCCCCC----C---ceEEEee
Q 023431 53 GSGFQS--KNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSP------G-STWDEIDF-EFLGNLSG----D---PYTLHTN 115 (282)
Q Consensus 53 Gs~i~S--k~~~~yG~~eariKlp~g~s~G~v~AFwl~~~------~-~~~~EIDi-E~lG~~~g----~---p~~~~tN 115 (282)
.++|.| |+.|+|||+|+|||||.| .|+||||||++. | |..+|||| |..|+..- . ..++|..
T Consensus 98 Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g 175 (321)
T cd02179 98 SARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGG 175 (321)
T ss_pred eeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEcc
Confidence 467888 477899999999999999 699999999986 3 67899999 99998521 0 0133433
Q ss_pred eecCCCC-Cce---eeEeeCCCCCCCcEEEEEEEecCcEEEEECCeEEEEEecCCC----------------CCCCCCCC
Q 023431 116 VFTNGKG-DRE---QQFHLWFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSES----------------IGVPFPKN 175 (282)
Q Consensus 116 ~~~~g~g-~~~---~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~----------------~g~~~P~~ 175 (282)
.+..... .+. .......+.+++||+|+++|+|++|+|||||++++++..... .....|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD 255 (321)
T cd02179 176 PVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFD 255 (321)
T ss_pred cccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCC
Confidence 3322111 111 011112356789999999999999999999999999986321 12346889
Q ss_pred CCcEEEEeeeeCC
Q 023431 176 QPMRIYSSLWNAD 188 (282)
Q Consensus 176 ~Pm~l~lnlw~g~ 188 (282)
+|++|+|||++||
T Consensus 256 ~~FyliLNlAVGG 268 (321)
T cd02179 256 KEFYLSLGVGVGG 268 (321)
T ss_pred CCeEEEEEEEecC
Confidence 9999999999988
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1e-24 Score=206.17 Aligned_cols=157 Identities=26% Similarity=0.453 Sum_probs=131.2
Q ss_pred ceeeecCCCeEEeCCCcEEEEEEe-------CCCcCeEEEccc--eEeEEEEEEEEecCCCCCceEEEEEeecC----CC
Q 023431 26 FDITWGDGRAKILNNGQLLTLSLD-------KASGSGFQSKNE--YLYGKIDMQLKLVPGNSAGTVTAYYLKSP----GS 92 (282)
Q Consensus 26 f~~~w~~~nv~~~~~G~~l~L~ld-------~~sGs~i~Sk~~--~~yG~~eariKlp~g~s~G~v~AFwl~~~----~~ 92 (282)
.+.+|..+++.+..+|. |.|.++ ++++++++|..+ |+||++|+|||+|.+ .|+||||||++. +.
T Consensus 72 ~~~~w~~~~~~lt~~~~-l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~ 148 (355)
T COG2273 72 KNLTWYVSNVVLTIGGT-LELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGG 148 (355)
T ss_pred cccceeecceeEeeCCe-eeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCC
Confidence 33577778888866665 777775 346788999777 999999999999977 899999999985 35
Q ss_pred CCCeeEEEeCCCCCCCceEEEeeeecCCCCCceeeEeeCC-CCCCCcEEEEEEEecCcEEEEECCeEEEEEecCCCCCCC
Q 023431 93 TWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWF-DPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSESIGVP 171 (282)
Q Consensus 93 ~~~EIDiE~lG~~~g~p~~~~tN~~~~g~g~~~~~~~l~~-d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~ 171 (282)
.++|||||++|+.+. +..+|+|.+.++.++.+....+.+ +..++||+|.++|.++.|+|||||++++++... ..
T Consensus 149 wp~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~ 223 (355)
T COG2273 149 WPDEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DY 223 (355)
T ss_pred CCcceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----cc
Confidence 679999999997553 346999999999888877777777 888999999999999999999999999999854 23
Q ss_pred CCCCCCcEEEEeeeeCCCcc
Q 023431 172 FPKNQPMRIYSSLWNADDWA 191 (282)
Q Consensus 172 ~P~~~Pm~l~lnlw~g~~Wa 191 (282)
.|. .||++++|+|.++.+.
T Consensus 224 ~~~-~p~y~~~nl~~~~~~~ 242 (355)
T COG2273 224 IPQ-IPFYVLVNLWMGGYAG 242 (355)
T ss_pred CcC-CcceeEEeecccCccC
Confidence 476 8999999999998765
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.81 E-value=1.3e-20 Score=130.62 Aligned_cols=44 Identities=52% Similarity=1.217 Sum_probs=36.7
Q ss_pred CCcccccC---CCHHHHHHHHHHhhcCeEEecccCCCCCCCCCCCCC
Q 023431 236 RNSWLSQE---LDSTSQNRLKWVQKNYMIYNYCTDTKRFPRGIPKEC 279 (282)
Q Consensus 236 ~~~~~~~~---l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~~~~ec 279 (282)
...||++. |+++|+++|+|||+||||||||+|++|||.++|+||
T Consensus 5 ~~~w~~~~~~~L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 5 SKSWWNQPYAQLSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TTSGGCSCCCS--HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CcccccCcccCCCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 45688865 999999999999999999999999999998779999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.69 E-value=3e-16 Score=152.73 Aligned_cols=189 Identities=23% Similarity=0.358 Sum_probs=124.7
Q ss_pred cCCCeEEeCCCcEEEEEEeCC-------CcCeEEE--ccceEeEEEEEEEEecCC-CCCceEEEEEeecC----------
Q 023431 31 GDGRAKILNNGQLLTLSLDKA-------SGSGFQS--KNEYLYGKIDMQLKLVPG-NSAGTVTAYYLKSP---------- 90 (282)
Q Consensus 31 ~~~nv~~~~~G~~l~L~ld~~-------sGs~i~S--k~~~~yG~~eariKlp~g-~s~G~v~AFwl~~~---------- 90 (282)
+++.|.. .+|. |+|++++. .++.++| |+-|+-|++|++++||.. +..|+|||||++++
T Consensus 159 ~p~~vtt-~~G~-l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast 236 (504)
T PF03935_consen 159 DPDAVTT-ENGS-LVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGAST 236 (504)
T ss_pred cCCCcEe-eCCE-EEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCcccccccc
Confidence 3555654 6787 88888643 3466777 788899999999999864 35799999999985
Q ss_pred ---C---------------------------------------------CCCCeeEE-EeCCCCCC-Cce---EEEeee-
Q 023431 91 ---G---------------------------------------------STWDEIDF-EFLGNLSG-DPY---TLHTNV- 116 (282)
Q Consensus 91 ---~---------------------------------------------~~~~EIDi-E~lG~~~g-~p~---~~~tN~- 116 (282)
| ....|||| |....... .+. .+|..=
T Consensus 237 ~g~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~ 316 (504)
T PF03935_consen 237 DGMWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPF 316 (504)
T ss_pred CceecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeeccc
Confidence 1 02369998 97643211 111 222210
Q ss_pred -------------ecCCC-------CCceee-E----ee---CC--CCCCCcEEEEEEEecC-----cEEEEECCeEEEE
Q 023431 117 -------------FTNGK-------GDREQQ-F----HL---WF--DPSAAFHTYSILWNPQ-----RIVFFVDGTPIRE 161 (282)
Q Consensus 117 -------------~~~g~-------g~~~~~-~----~l---~~--d~~~dfHtY~i~Wtp~-----~I~fyVDG~~vr~ 161 (282)
|.... |+.-|+ + .+ ++ ....+||+|++||.|. .|+|+|||+++.+
T Consensus 317 d~~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twt 396 (504)
T PF03935_consen 317 DIWYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWT 396 (504)
T ss_pred ccCCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEE
Confidence 10000 011111 0 11 11 1237899999999874 8999999999999
Q ss_pred EecCCCC------CCCCCCCCCcEEEEeeeeCCCccCCCCccccCCC--CCCeEEEEeEEEEeeecccCCCCCCCCC
Q 023431 162 LKNSESI------GVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWT--HAPFTASYRNFKANNACVWSNGKSSCAS 230 (282)
Q Consensus 162 ~~~~~~~------g~~~P~~~Pm~l~lnlw~g~~Wat~GG~~~~d~~--~~Pf~~~~~~~~v~~~c~~~~~~~~c~~ 230 (282)
+...... ....|. .||+|++||....+|+ . +||. ..|..|.||+|||+. ..+...-.|.+
T Consensus 397 i~a~Al~~~~~I~~R~Ip~-EPMyIIlNlgmS~sf~----~--vd~~~L~FP~~M~IDYVRVYQ--~~~~~~vgCDP 464 (504)
T PF03935_consen 397 INAEALGPNPNIGQRPIPE-EPMYIILNLGMSSSFG----Y--VDWNHLCFPATMRIDYVRVYQ--PEDAINVGCDP 464 (504)
T ss_pred EEhhhcCCCCCcCccccCc-CCceeeeccccccccC----c--cccccccccceEEEeEEEEec--cCCCCeeeeCC
Confidence 9865431 235787 9999999999999996 2 4665 478899999999987 11112356875
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.59 E-value=1.9e-14 Score=132.42 Aligned_cols=151 Identities=25% Similarity=0.407 Sum_probs=98.1
Q ss_pred eEEeCCCcEEEEEEeCCC---------cCeEEEccceEeEEEEEEE-EecCCCCCceEEEEEeecC-CCCCCeeEE-EeC
Q 023431 35 AKILNNGQLLTLSLDKAS---------GSGFQSKNEYLYGKIDMQL-KLVPGNSAGTVTAYYLKSP-GSTWDEIDF-EFL 102 (282)
Q Consensus 35 v~~~~~G~~l~L~ld~~s---------Gs~i~Sk~~~~yG~~eari-Klp~g~s~G~v~AFwl~~~-~~~~~EIDi-E~l 102 (282)
+.+ .+|. |.|.+|..+ .++|.||++|.+|++|+|+ |||.+ .|+||||||++. ||..+|||| |.+
T Consensus 44 ~~v-~~g~-l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~v 119 (293)
T cd02181 44 AYV-NSGN-VYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEGV 119 (293)
T ss_pred eEe-eCCe-EEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCCCCCCCCcEEEEecc
Confidence 444 4566 888886432 3679999999999999998 99998 899999999987 999999999 999
Q ss_pred CCCCCCceEEEeee----ecCC--CC-------------C--------ceeeEeeCCCCCCCcEEEEEEEecCcEEEEE-
Q 023431 103 GNLSGDPYTLHTNV----FTNG--KG-------------D--------REQQFHLWFDPSAAFHTYSILWNPQRIVFFV- 154 (282)
Q Consensus 103 G~~~g~p~~~~tN~----~~~g--~g-------------~--------~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyV- 154 (282)
+.......++||.- -..+ .| + ....+-..|+. .+=-.|+++|+++.|+.+.
T Consensus 120 n~~~~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN~-~GGGvyA~ew~~~~I~vWff 198 (293)
T cd02181 120 NLQTSNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFNA-AGGGVYAMEWTSDGIKVWFF 198 (293)
T ss_pred CCCCceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCcccccccc-CCCcEEEEEEccCcEEEEEe
Confidence 86443334666531 0010 00 0 00112223332 3347999999999998554
Q ss_pred --CCeEEEEEecCCC-------CCCCCCC--------CCCcEEEEeeeeCCCcc
Q 023431 155 --DGTPIRELKNSES-------IGVPFPK--------NQPMRIYSSLWNADDWA 191 (282)
Q Consensus 155 --DG~~vr~~~~~~~-------~g~~~P~--------~~Pm~l~lnlw~g~~Wa 191 (282)
+.+|- .++.... +-..||. -++++|++|+--=|+||
T Consensus 199 ~R~~iP~-di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 199 PRGSIPA-DITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred cCCCCCc-ccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEeecccccc
Confidence 22221 2221111 1123442 17899999999999999
No 18
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=94.29 E-value=0.5 Score=39.86 Aligned_cols=121 Identities=17% Similarity=0.318 Sum_probs=62.4
Q ss_pred eCCCcEEEEEE--eCCCcCeEEEccceEeEEEEEEEEecCCCCCceEEEEEeecC-------CCCCCeeEEEeCCCCCCC
Q 023431 38 LNNGQLLTLSL--DKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSP-------GSTWDEIDFEFLGNLSGD 108 (282)
Q Consensus 38 ~~~G~~l~L~l--d~~sGs~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~-------~~~~~EIDiE~lG~~~g~ 108 (282)
..||. |. .. ....++-+.++..|.=..+++.+|+.++ | -.++++... ....-|+.|.--+.....
T Consensus 28 v~dG~-l~-~~~~~~~~~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~~~ 101 (185)
T PF06439_consen 28 VKDGV-LV-SNGSSGSGGGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGTGL 101 (185)
T ss_dssp EETTE-EE--GGGGESSS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCSTT
T ss_pred eeCCE-EE-ecccCCCCcceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCccCC
Confidence 46785 33 11 2233466888888888899999998444 2 344444332 234556666332211000
Q ss_pred ceEEEeeeecCCCCCceeeEeeCCCCCCCcEEEEEEEecCcEEEEECCeEEEEEecCC
Q 023431 109 PYTLHTNVFTNGKGDREQQFHLWFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSE 166 (282)
Q Consensus 109 p~~~~tN~~~~g~g~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~ 166 (282)
+ .....++.. .............+..+||++.|.-..++|+.+|||++|.++....
T Consensus 102 ~-~~~G~~~~~-~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~~ 157 (185)
T PF06439_consen 102 P-NSTGSLYDE-PPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDPS 157 (185)
T ss_dssp T-TSTTSBTTT-B-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETTS
T ss_pred C-CccceEEEe-ccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcCC
Confidence 0 000000000 0000000011122457999999999999999999999999988643
No 19
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=93.76 E-value=3 Score=33.68 Aligned_cols=69 Identities=12% Similarity=0.235 Sum_probs=44.1
Q ss_pred CCCCcEEEEEEEec--CcEEEEECCeEEEEEecCCCCCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEe
Q 023431 134 PSAAFHTYSILWNP--QRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYR 211 (282)
Q Consensus 134 ~~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~g~~Wat~GG~~~~d~~~~Pf~~~~~ 211 (282)
+...||...+.++. .+|++||||+++.+.... ..+...|+.+-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 34789999999998 799999999988654321 1222234333211111 11 12358999999
Q ss_pred EEEEeeecc
Q 023431 212 NFKANNACV 220 (282)
Q Consensus 212 ~~~v~~~c~ 220 (282)
.++|.. +.
T Consensus 122 evriy~-~a 129 (133)
T smart00560 122 EVRVYN-RA 129 (133)
T ss_pred EEEEec-cc
Confidence 999987 54
No 20
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=93.32 E-value=0.82 Score=39.89 Aligned_cols=101 Identities=23% Similarity=0.354 Sum_probs=54.9
Q ss_pred CCCcCeEEEccce---EeE-EEEEEEEecCCCCCceEEEEEeecCCCCCCeeEEEeCCCCCCCceEEEeeeecCCCCCce
Q 023431 50 KASGSGFQSKNEY---LYG-KIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDRE 125 (282)
Q Consensus 50 ~~sGs~i~Sk~~~---~yG-~~eariKlp~g~s~G~v~AFwl~~~~~~~~EIDiE~lG~~~g~p~~~~tN~~~~g~g~~~ 125 (282)
.-.|+++-||+.- .+| +....+|+..| |..+-.+.-+. ..--++|-.-.+ |+ +-.+. .|.+.+
T Consensus 15 gw~gse~ys~~~~~~S~~gW~ls~~~RV~~G---~~n~~yyAnG~--~r~l~~lsvn~s--G~---LvA~L--~g~ss~- 81 (198)
T PF09264_consen 15 GWGGSELYSKQTELNSQQGWSLSWESRVVSG---GCNTNYYANGS--KRYLPILSVNES--GS---LVAEL--EGQSSN- 81 (198)
T ss_dssp ETTEEEEECCCHHHHCCC-EEEEEEEEEEEE---S-EEEEEEESS--EEEEEEEEE-TT--S----EEEEE--TTS-S--
T ss_pred ccccchhhhhhhhhhhhcCcceeeeEEEecC---cceeEEEcCCc--eEEEEEEEEcCC--CC---EEEEE--ecCCCc-
Confidence 3678888886543 366 78889998887 66665555443 111122211111 11 11111 122111
Q ss_pred eeEeeCCCCCCCcEEEEEEEec--CcEEEEECCeEEEEEe
Q 023431 126 QQFHLWFDPSAAFHTYSILWNP--QRIVFFVDGTPIRELK 163 (282)
Q Consensus 126 ~~~~l~~d~~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~ 163 (282)
..+.+......+||.|.|...| ..-.|||||++|++..
T Consensus 82 ~~~~~~~~di~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 82 TLLATTGADIHGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp EEEE-CHHHHCSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred EEEecccccccceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 1223321113589999999988 7899999999999864
No 21
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=93.23 E-value=2.6 Score=33.27 Aligned_cols=65 Identities=12% Similarity=0.359 Sum_probs=39.8
Q ss_pred CCCcEEEEEEEecCcEEEEECCeEEEEEecCCCCCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEE
Q 023431 135 SAAFHTYSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFK 214 (282)
Q Consensus 135 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~g~~Wat~GG~~~~d~~~~Pf~~~~~~~~ 214 (282)
...||..++.|....+.+||||+.+.+...... ...+...+ +. .|... ....+|...++.++
T Consensus 84 ~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~--~~~~~~~~--~~----iG~~~----------~~~~~~~g~i~~~~ 145 (157)
T PF13385_consen 84 DNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN--ISLNSNGP--LF----IGGSG----------GGSSPFNGYIDDLR 145 (157)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEETTCTEESS--SSTTSCCE--EE----ESS-S----------TT--B-EEEEEEEE
T ss_pred CCCEEEEEEEEECCeEEEEECCEEEEeEeccCC--cCCCCcce--EE----EeecC----------CCCCceEEEEEEEE
Confidence 488999999999999999999998865543221 01111122 21 12221 22578999999999
Q ss_pred Eee
Q 023431 215 ANN 217 (282)
Q Consensus 215 v~~ 217 (282)
+..
T Consensus 146 i~~ 148 (157)
T PF13385_consen 146 IYN 148 (157)
T ss_dssp EES
T ss_pred EEC
Confidence 976
No 22
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=90.57 E-value=5 Score=34.49 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=51.3
Q ss_pred EEEEEEEecCCCCCceEEEEEeecCCCCCCeeEEEeCCCCCCCceEEEeeeecCCCCCceeeEeeC-C-CCCCCcEEEEE
Q 023431 66 KIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLW-F-DPSAAFHTYSI 143 (282)
Q Consensus 66 ~~eariKlp~g~s~G~v~AFwl~~~~~~~~EIDiE~lG~~~g~p~~~~tN~~~~g~g~~~~~~~l~-~-d~~~dfHtY~i 143 (282)
.+.+.+|..+. ..|+.-++.-. + ...++-++.-|.. + .+.. +..+..+..+..... . -....||...+
T Consensus 55 si~~~~r~~~~-~~g~L~si~~~-~--~~~~l~v~l~g~~---~-~~~~--~~~~~~g~~~~~~f~~~~l~dg~WH~lal 124 (184)
T smart00210 55 SLLTTFRQTPK-SRGVLFAIYDA-Q--NVRQFGLEVDGRA---N-TLLL--RYQGVDGKQHTVSFRNLPLADGQWHKLAL 124 (184)
T ss_pred EEEEEEEeCCC-CCeEEEEEEcC-C--CcEEEEEEEeCCc---c-EEEE--EECCCCCcEEEEeecCCccccCCceEEEE
Confidence 46777777643 35665555442 2 3345555655532 1 2332 221222223322221 1 23578999999
Q ss_pred EEecCcEEEEECCeEEEEEe
Q 023431 144 LWNPQRIVFFVDGTPIRELK 163 (282)
Q Consensus 144 ~Wtp~~I~fyVDG~~vr~~~ 163 (282)
.+..+++++|||++++.+..
T Consensus 125 ~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 125 SVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EEeCCEEEEEECCcccccee
Confidence 99999999999999987764
No 23
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=88.64 E-value=1.9 Score=39.01 Aligned_cols=77 Identities=14% Similarity=0.260 Sum_probs=48.0
Q ss_pred EEEEEEEecCCC-----CCceEEEEEeecC---------------CC-CCCeeEE-EeCCCCCCCceEEEeeeec-CCC-
Q 023431 66 KIDMQLKLVPGN-----SAGTVTAYYLKSP---------------GS-TWDEIDF-EFLGNLSGDPYTLHTNVFT-NGK- 121 (282)
Q Consensus 66 ~~eariKlp~g~-----s~G~v~AFwl~~~---------------~~-~~~EIDi-E~lG~~~g~p~~~~tN~~~-~g~- 121 (282)
-|-.+++||... ...=.||+||++. |. .++|+|| |.|.... . .+-+.+|. +|.
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g~--~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSGD--D-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCCC--c-eeEEEEecccCcc
Confidence 477888888831 1356899999975 43 6899998 9997643 2 34444554 332
Q ss_pred -----CCceeeEeeCCCCCCCcEEEEEEEecC
Q 023431 122 -----GDREQQFHLWFDPSAAFHTYSILWNPQ 148 (282)
Q Consensus 122 -----g~~~~~~~l~~d~~~dfHtY~i~Wtp~ 148 (282)
++...-+. .|++..-++++.++.+
T Consensus 179 ~~~~g~G~~~yf~---RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 179 DINGGGGSSDYFK---RPTSGTMKVAVIFDSS 207 (235)
T ss_pred ccCCCCCCCCccc---CCCCCCeEEEEEEcCC
Confidence 11111111 2567788888888643
No 24
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=81.24 E-value=25 Score=27.90 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=48.3
Q ss_pred EeEEEEEEEEecCCCCCceEEEEEeecCCCCCCeeEEEeCCCCCCCceEEEeeeecCCCCCceeeEeeCC-CCCCCcEEE
Q 023431 63 LYGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWF-DPSAAFHTY 141 (282)
Q Consensus 63 ~yG~~eariKlp~g~s~G~v~AFwl~~~~~~~~EIDiE~lG~~~g~p~~~~tN~~~~g~g~~~~~~~l~~-d~~~dfHtY 141 (282)
....+++++|.... .|+. |++.+. ...+-+-+|... | .++..+-. + .....+.... -....||..
T Consensus 20 ~~~~i~~~frt~~~--~g~l--~~~~~~-~~~~~~~l~l~~---g---~l~~~~~~-g--~~~~~~~~~~~v~dg~Wh~v 85 (151)
T cd00110 20 TRLSISFSFRTTSP--NGLL--LYAGSQ-NGGDFLALELED---G---RLVLRYDL-G--SGSLVLSSKTPLNDGQWHSV 85 (151)
T ss_pred ceeEEEEEEEeCCC--CeEE--EEecCC-CCCCEEEEEEEC---C---EEEEEEcC-C--cccEEEEccCccCCCCEEEE
Confidence 44567777777654 4654 233222 134555566653 2 23332222 2 2222333221 234689999
Q ss_pred EEEEecCcEEEEECCeEEEEE
Q 023431 142 SILWNPQRIVFFVDGTPIREL 162 (282)
Q Consensus 142 ~i~Wtp~~I~fyVDG~~vr~~ 162 (282)
.|.+....++.+|||.+..+.
T Consensus 86 ~i~~~~~~~~l~VD~~~~~~~ 106 (151)
T cd00110 86 SVERNGRSVTLSVDGERVVES 106 (151)
T ss_pred EEEECCCEEEEEECCccEEee
Confidence 999999999999999854333
No 25
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=76.58 E-value=42 Score=29.23 Aligned_cols=75 Identities=12% Similarity=0.242 Sum_probs=44.7
Q ss_pred eeCCCCCCCcEEEEE--EEec---CcEEEEECCeEEEEEecCCCCCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCC
Q 023431 129 HLWFDPSAAFHTYSI--LWNP---QRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTH 203 (282)
Q Consensus 129 ~l~~d~~~dfHtY~i--~Wtp---~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~g~~Wat~GG~~~~d~~~ 203 (282)
.+.......||.+.| .|.+ ..|..++||+++....... .++.....++.+.|--.+. .+..+.
T Consensus 145 ~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~~~-~~~~~~------- 212 (224)
T PF14099_consen 145 DLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRSGW-KNDPNE------- 212 (224)
T ss_dssp ECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEHCC-HHHSC--------
T ss_pred cCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECCCC-cCCCcc-------
Confidence 333344588999886 5765 5799999999998887632 2332366778888875432 211111
Q ss_pred CCeEEEEeEEEE
Q 023431 204 APFTASYRNFKA 215 (282)
Q Consensus 204 ~Pf~~~~~~~~v 215 (282)
.+-.+.||+|++
T Consensus 213 ~~~~vy~D~v~~ 224 (224)
T PF14099_consen 213 SDTQVYYDNVRI 224 (224)
T ss_dssp -SS-EEEEEEE-
T ss_pred cccEEEeccccC
Confidence 111188998875
No 26
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=74.86 E-value=57 Score=28.43 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=42.6
Q ss_pred CCCCcEEEEEEEe--cCcEEEEECCeEEEEEecCCCCCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEe
Q 023431 134 PSAAFHTYSILWN--PQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYR 211 (282)
Q Consensus 134 ~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~g~~Wat~GG~~~~d~~~~Pf~~~~~ 211 (282)
...+||...+.|+ ..++.+||||+++.. . .-..+..++. .-.|+|.-- -+.+ ||-. + ....|.-.++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~-~~~~g~~i~~--~G~lvlGq~-qd~~---gg~f--~-~~~~f~G~i~ 156 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR-K-GLAKGYTVKP--GGSIILGQE-QDSY---GGGF--D-ATQSFVGEIG 156 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc-c-cccCCcEECC--CCEEEEEec-ccCC---CCCC--C-CCcceeEEEe
Confidence 3578999999997 457999999998621 1 1111222221 223444331 1222 3422 3 2457888999
Q ss_pred EEEEee
Q 023431 212 NFKANN 217 (282)
Q Consensus 212 ~~~v~~ 217 (282)
+|+|-+
T Consensus 157 ~v~iw~ 162 (206)
T smart00159 157 DLNMWD 162 (206)
T ss_pred eeEEec
Confidence 998866
No 27
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=67.62 E-value=82 Score=27.24 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=42.9
Q ss_pred CCCCcEEEEEEEe--cCcEEEEECCeEEEEEecCCCCCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEe
Q 023431 134 PSAAFHTYSILWN--PQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYR 211 (282)
Q Consensus 134 ~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~g~~Wat~GG~~~~d~~~~Pf~~~~~ 211 (282)
....||...+.|+ ..++.+||||+++..-. -..+..++. ...|+|.-- --.-||. .+ ....|.-.++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~~--~g~l~lG~~----q~~~gg~--~~-~~~~f~G~I~ 156 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVGP--GGSIILGQE----QDSYGGG--FD-ATQSFVGEIS 156 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEECC--CCeEEEeec----ccCCCCC--CC-CCcceEEEEc
Confidence 4678999999998 45799999999875332 111222322 223333321 1111342 23 2357888999
Q ss_pred EEEEee
Q 023431 212 NFKANN 217 (282)
Q Consensus 212 ~~~v~~ 217 (282)
+|++.+
T Consensus 157 ~v~iw~ 162 (201)
T cd00152 157 DVNMWD 162 (201)
T ss_pred eeEEEc
Confidence 998865
No 28
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=66.07 E-value=30 Score=30.96 Aligned_cols=134 Identities=20% Similarity=0.266 Sum_probs=66.9
Q ss_pred EEEccceEeE-EEEEEEEecCCCCCceEEEEEeecCCCCCCeeEE--EeCCCCCC--------CceEEEeeeecCCCCC-
Q 023431 56 FQSKNEYLYG-KIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDF--EFLGNLSG--------DPYTLHTNVFTNGKGD- 123 (282)
Q Consensus 56 i~Sk~~~~yG-~~eariKlp~g~s~G~v~AFwl~~~~~~~~EIDi--E~lG~~~g--------~p~~~~tN~~~~g~g~- 123 (282)
+-.+..|.=+ +++...+-..- +|+..=|+--.. ..+| || +-|-..+| +-..+|..+|......
T Consensus 54 lW~p~~Fp~~i~IsweF~p~~e--pGLamlfF~Aag--~~G~-d~fd~~l~~RtG~y~qyhs~dina~HiSYfrr~~~ee 128 (218)
T PF09224_consen 54 LWCPEVFPDDIRISWEFTPLAE--PGLAMLFFAAAG--MNGE-DIFDPSLKPRTGSYPQYHSGDINAYHISYFRRKWPEE 128 (218)
T ss_dssp EE-SS-B-SSEEEEEEEEEEE---SEEEEEEEEEEE--TTS---TT-TTS----S-THHHHSSSEEEEEEEEEEESSHHH
T ss_pred EECcccCCCCeEEEEEEEEcCC--CCEEEEEeeccc--CCCC-cccCCccccccCcccceecccHHHHHHHHhcccCccc
Confidence 4445555433 45555554444 788887776543 2333 33 33333332 3346777777643210
Q ss_pred c----------------eeeEe---eCCCCCCCcEEEEEEEecCcEEEEECCeEEEEEecCCCCCCCCCCCCCcEEEEee
Q 023431 124 R----------------EQQFH---LWFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSL 184 (282)
Q Consensus 124 ~----------------~~~~~---l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnl 184 (282)
| .|... ...|+ ..|+.-.|.=....|.|.|||.+|..++..... ..|.-
T Consensus 129 raf~t~nLRKs~gf~lvaqGaDplp~~~d~-~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~~--~gPvl--------- 196 (218)
T PF09224_consen 129 RAFHTCNLRKSPGFHLVAQGADPLPPVEDA-RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGST--YGPVL--------- 196 (218)
T ss_dssp HTS-EEEEEEETTTEEEEEEE-----GGG---S-EEEEEEEETTEEEEEETTEEEEEEE--SSS--SSS-----------
T ss_pred ccccccchhhCCCcceeeccCCCCCCcccc-CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCCc--cCCcc---------
Confidence 0 01111 11232 366666778899999999999999999765321 12320
Q ss_pred eeCCCccCCCCccccCCCCCCeEEEEeEEEE
Q 023431 185 WNADDWATRGGLVKTDWTHAPFTASYRNFKA 215 (282)
Q Consensus 185 w~g~~Wat~GG~~~~d~~~~Pf~~~~~~~~v 215 (282)
.+|++-.- .=+|..|.|+++.|
T Consensus 197 --------~~G~IGfR-qMapl~A~Yrnl~V 218 (218)
T PF09224_consen 197 --------RGGRIGFR-QMAPLVARYRNLEV 218 (218)
T ss_dssp ---------SBEEEEE-EETT-EEEEEEEEE
T ss_pred --------cCcEeeee-ccchhhhhhccccC
Confidence 14554221 23799999999986
No 29
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=55.91 E-value=1.4e+02 Score=26.15 Aligned_cols=133 Identities=18% Similarity=0.291 Sum_probs=67.9
Q ss_pred cceEeEEEEEEEEecCCCCCceEEEEEeecCCC----------CCCeeEEEeCCCCCCCceEEEeeeecCCCCCceeeEe
Q 023431 60 NEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGS----------TWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFH 129 (282)
Q Consensus 60 ~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~~----------~~~EIDiE~lG~~~g~p~~~~tN~~~~g~g~~~~~~~ 129 (282)
....-|.+-+|.|.... .+ .-|++-.++.. ..+++=+|+.+......+...+..-..+.
T Consensus 30 k~L~~gTI~i~Fk~~~~--~~-~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~-------- 98 (190)
T PF02973_consen 30 KKLEEGTIVIRFKSDSN--SG-IQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGG-------- 98 (190)
T ss_dssp CT-SSEEEEEEEEESS---SS-EEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SE--------
T ss_pred hcccccEEEEEEecCCC--cc-eeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEeccc--------
Confidence 44556778888887443 33 34455554410 12377778877654443333333111100
Q ss_pred eCCCCCCCcEEEEEEEe--cCcEEEEECCeEEEEEecCCCCCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeE
Q 023431 130 LWFDPSAAFHTYSILWN--PQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFT 207 (282)
Q Consensus 130 l~~d~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~g~~Wat~GG~~~~d~~~~Pf~ 207 (282)
-+ ....||+-++.=+ ..+..+|+||..+.++.... ..|-.+-|--= ++-.|+. .++|. ..-||.
T Consensus 99 ~~--~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~~~n--~~~iG~t--~R~g~-----~~y~f~ 164 (190)
T PF02973_consen 99 YK--NNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIPGLN--SVQIGGT--NRAGS-----NAYPFN 164 (190)
T ss_dssp ET--TEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGSTT----EEEESSE--EETTE-----EES--E
T ss_pred cc--CCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCcCCc--eEEEcce--EeCCC-----ceeccc
Confidence 01 1246888888886 67899999998888775432 22322222000 1112321 12332 246999
Q ss_pred EEEeEEEEee
Q 023431 208 ASYRNFKANN 217 (282)
Q Consensus 208 ~~~~~~~v~~ 217 (282)
-.+++++|..
T Consensus 165 G~I~~l~iYn 174 (190)
T PF02973_consen 165 GTIDNLKIYN 174 (190)
T ss_dssp EEEEEEEEES
T ss_pred ceEEEEEEEc
Confidence 9999999988
No 30
>smart00282 LamG Laminin G domain.
Probab=49.76 E-value=76 Score=24.91 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.3
Q ss_pred CCCcEEEEEEEecCcEEEEECCeEEEE
Q 023431 135 SAAFHTYSILWNPQRIVFFVDGTPIRE 161 (282)
Q Consensus 135 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~ 161 (282)
...||.-.|.-....+..+|||.....
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~ 87 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVS 87 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCcccc
Confidence 468999999999999999999975543
No 31
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=47.77 E-value=22 Score=36.91 Aligned_cols=52 Identities=19% Similarity=0.383 Sum_probs=37.3
Q ss_pred CCCcEEEEEEEecCcEEEEECCeEEEEEecCCCCCCCCCCCCCcEEEEeeeeCCCcc
Q 023431 135 SAAFHTYSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNADDWA 191 (282)
Q Consensus 135 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~g~~Wa 191 (282)
.++||.|.+.-.--.++.||||+-..-..-. ..||- .|.++-..|=+|-=|.
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~----ddwpl-Hpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT----DDWPL-HPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCceec----cCCcc-CcccccceeEEeeecc
Confidence 5789999999976669999999865432221 35777 6666666666677777
No 32
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=45.38 E-value=1.3e+02 Score=22.68 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=46.2
Q ss_pred CCCcEEEEEEEecCcEEEEECCeEEEEEecCCCCCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEE
Q 023431 135 SAAFHTYSILWNPQRIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFK 214 (282)
Q Consensus 135 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~g~~Wat~GG~~~~d~~~~Pf~~~~~~~~ 214 (282)
...||+-.|.-....++..||+............. .-+...-.++.||.-...... ..-....|.--+++++
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~~------~~~~~~~~l~iGg~~~~~~~~--~~~~~~~f~Gci~~l~ 124 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSSS------DSLDPDGSLYIGGLPESNQPS--GSVDTPGFVGCIRDLR 124 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSSTTH------HCBESEEEEEESSTTTTCTCT--TSSTTSB-EEEEEEEE
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEeccccce------ecccCCCCEEEecccCccccc--cccCCCCcEEEcCeEE
Confidence 57799999999999999999999988776432110 022234456667653311111 0101567777888887
Q ss_pred Eee
Q 023431 215 ANN 217 (282)
Q Consensus 215 v~~ 217 (282)
+.+
T Consensus 125 vng 127 (128)
T PF02210_consen 125 VNG 127 (128)
T ss_dssp ETT
T ss_pred ECC
Confidence 753
No 33
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=35.92 E-value=1.4e+02 Score=24.74 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=17.8
Q ss_pred CCCeEEeCCCcEEEEEEeCCCcCe
Q 023431 32 DGRAKILNNGQLLTLSLDKASGSG 55 (282)
Q Consensus 32 ~~nv~~~~~G~~l~L~ld~~sGs~ 55 (282)
.+++.+...|..+.+.-|...|++
T Consensus 34 qs~~qv~g~G~V~~vLpdd~~Gsr 57 (131)
T PF11948_consen 34 QSDVQVSGCGTVVKVLPDDNKGSR 57 (131)
T ss_pred ccCeeEeccEEEEEECcccCCCCc
Confidence 567888778886666667778876
No 34
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=27.60 E-value=1.3e+02 Score=21.99 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=31.4
Q ss_pred cCCCeEEeCCCcEEEEEEeCCCcCeEEEccceEeEEEEEEEEecCCCCCceEEEE
Q 023431 31 GDGRAKILNNGQLLTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAY 85 (282)
Q Consensus 31 ~~~nv~~~~~G~~l~L~ld~~sGs~i~Sk~~~~yG~~eariKlp~g~s~G~v~AF 85 (282)
.++++.+.-++..|.++..+..... ...+.+|.|+=+++||..-.+.-+.|-
T Consensus 19 ~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~vd~~~i~A~ 70 (83)
T cd06526 19 KPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEGVDPDSVTSS 70 (83)
T ss_pred CHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCCCChHHeEEE
Confidence 3556666555566777775432211 345678999999999976333334443
No 35
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=25.43 E-value=1.1e+02 Score=23.28 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=26.2
Q ss_pred CCCeEEeCCCcEEEEEEeCCCcCeEEEccceEeEEEEEEEEecCC
Q 023431 32 DGRAKILNNGQLLTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPG 76 (282)
Q Consensus 32 ~~nv~~~~~G~~l~L~ld~~sGs~i~Sk~~~~yG~~eariKlp~g 76 (282)
++.|.+.-.+..|.++..+..-..-.....+.||.|+=++.||.+
T Consensus 21 kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~ 65 (87)
T cd06482 21 PDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPG 65 (87)
T ss_pred HHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCC
Confidence 444555434444777764322111011235799999999999975
No 36
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=24.85 E-value=2.3e+02 Score=22.38 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=32.7
Q ss_pred ecCCCCCceeeEe-eCCCCCCCcEEEEEEEecCcEEEEECCeEEEEEec
Q 023431 117 FTNGKGDREQQFH-LWFDPSAAFHTYSILWNPQRIVFFVDGTPIRELKN 164 (282)
Q Consensus 117 ~~~g~g~~~~~~~-l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~ 164 (282)
+.+|.-++|++.. .+|.+ .+..+-.|.=++++...+|||+++..+..
T Consensus 58 ~~~g~Wg~Eer~~~~pf~~-g~~F~l~i~~~~~~f~i~vng~~~~~F~~ 105 (127)
T cd00070 58 FLNGNWGPEERSGGFPFQP-GQPFELTILVEEDKFQIFVNGQHFFSFPH 105 (127)
T ss_pred CCCCEecHhhccCCCCCCC-CCeEEEEEEEcCCEEEEEECCEeEEEecC
Confidence 3334334455543 55554 44558889999999999999999988763
No 37
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=24.71 E-value=1.2e+02 Score=22.64 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=28.9
Q ss_pred cCCCeEEeCCCcEEEEEEeCCCcC----eEEEccceEeEEEEEEEEecCC
Q 023431 31 GDGRAKILNNGQLLTLSLDKASGS----GFQSKNEYLYGKIDMQLKLVPG 76 (282)
Q Consensus 31 ~~~nv~~~~~G~~l~L~ld~~sGs----~i~Sk~~~~yG~~eariKlp~g 76 (282)
.++++.+.-+|..|.++..+.... .+. .+.+.+|.|+-++.||..
T Consensus 23 ~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~-~~e~~~g~f~R~~~LP~~ 71 (90)
T cd06470 23 SEDDLEIEVENNQLTVTGKKADEENEEREYL-HRGIAKRAFERSFNLADH 71 (90)
T ss_pred CHHHeEEEEECCEEEEEEEEcccccCCCcEE-EEEEeceEEEEEEECCCC
Confidence 456677765666677776433222 111 235679999999999875
No 38
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=21.59 E-value=1.3e+02 Score=23.69 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCCCcEEEEEEEecCcEEEEECCeEEEEEe
Q 023431 134 PSAAFHTYSILWNPQRIVFFVDGTPIRELK 163 (282)
Q Consensus 134 ~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 163 (282)
+.++-|++.+. ..+.++++|||+++-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 45677888888 788899999999996655
No 39
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=21.40 E-value=1.2e+02 Score=22.44 Aligned_cols=34 Identities=18% Similarity=0.401 Sum_probs=20.0
Q ss_pred cEEEEECCeEEEEEecCCCCCCCCCCCCCcEEEEee
Q 023431 149 RIVFFVDGTPIRELKNSESIGVPFPKNQPMRIYSSL 184 (282)
Q Consensus 149 ~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnl 184 (282)
.+.|||||+++.+..... ...|+-..|-.-.|.+
T Consensus 44 ~~~W~vdg~~~g~~~~~~--~~~~~~~~~G~h~l~v 77 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGH--QLFWQPDRPGEHTLTV 77 (89)
T ss_pred cEEEEECCEEcccCCCCC--eEEeCCCCCeeEEEEE
Confidence 788999999996544332 1223322455555555
No 40
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=20.99 E-value=2.8e+02 Score=21.29 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=26.8
Q ss_pred CCCCcEEEEEEEecCcEEEEECCe--EEEEEec
Q 023431 134 PSAAFHTYSILWNPQRIVFFVDGT--PIRELKN 164 (282)
Q Consensus 134 ~~~dfHtY~i~Wtp~~I~fyVDG~--~vr~~~~ 164 (282)
...+|..|.|.|....|.+..||. |+-+++.
T Consensus 50 s~~e~~~fwI~~~~G~I~vg~~g~~~pfl~~~D 82 (102)
T PF12248_consen 50 SPSEFRMFWISWRDGTIRVGRGGEDEPFLEWTD 82 (102)
T ss_pred CCCccEEEEEEECCCEEEEEECCCccEEEEEEC
Confidence 357899999999999999999987 7777764
Done!