BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023433
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DOO|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid
Binding Protein At3g63170 (Atfap1)
pdb|4DOO|B Chain B, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid
Binding Protein At3g63170 (Atfap1)
Length = 205
Score = 278 bits (712), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/199 (67%), Positives = 167/199 (83%), Gaps = 1/199 (0%)
Query: 82 TVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYG 141
+VVE KTG SFP+ +G SR+LLG+GLRKKS+LGLKNIDVYAFGVYAD DDVKK++ +KY
Sbjct: 4 SVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYA 63
Query: 142 NMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDN 200
N+ +E++ NK +DLMEAD+ MT+RLQI+Y KL+IRSVR+AF+ESVG+RL+KFGGSDN
Sbjct: 64 NLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDN 123
Query: 201 KELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKEVGSIQSKLLCRSLLDLYIG 260
ELLQ FTS FKDEYKIP+ S I+L+K+ GHVL I+G VGS++S LLCRS+LDLYIG
Sbjct: 124 DELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAIEGNHVGSVKSHLLCRSILDLYIG 183
Query: 261 EEPFDRKAKEDIELNLSSL 279
EEPFD+ A+ED N +SL
Sbjct: 184 EEPFDKNAREDFLDNAASL 202
>pdb|3K5W|A Chain A, Crystal Structure Of A Carbohydrate Kinase (Yjef
Family)from Helicobacter Pylori
Length = 475
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 197 GSDNKELLQKFTSQFKD---EYKIPKGSVIELSKERGHVLWTTIDGKEVGSIQSKLLCRS 253
G D L ++ +F+ E K+ K +L KER I E ++ L C
Sbjct: 59 GGDGYALARRLVGRFRVLVFEXKLTKSPXCQLQKERAKKAGVVIKTYEENALNQNLECDV 118
Query: 254 LLDLYIGEEPFDRKAKEDIELNLSSLIQK 282
L+D IG K K + LN SL QK
Sbjct: 119 LIDCVIGSH---FKGKLEPFLNFESLSQK 144
>pdb|4DOI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Chalcone
Isomerase At3g55120 (Atchi)
pdb|4DOI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Chalcone
Isomerase At3g55120 (Atchi)
Length = 246
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 82/191 (42%), Gaps = 15/191 (7%)
Query: 102 LLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKEN-----KLNED 156
L G G+R + G K + GVY + + V LS K+ + EL E+ ++
Sbjct: 41 LGGAGVRGLDIQG-KFVIFTVIGVYLEGNAVPS-LSVKWKGKTTEELTESIPFFREIVTG 98
Query: 157 LMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYK 216
E + +T++L + + S + + ++ +L + + K + +KF FK+E
Sbjct: 99 AFEKFIKVTMKLPLTGQQYSEKVTENCV--AIWKQLGLYTDCEAKAV-EKFLEIFKEETF 155
Query: 217 IPKGSVIELSKERGHVLWT-----TIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKED 271
P S++ G + +I + I++KLL ++L+ IG+ +
Sbjct: 156 PPGSSILFALSPTGSLTVAFSKDDSIPETGIAVIENKLLAEAVLESIIGKNGVSPGTRLS 215
Query: 272 IELNLSSLIQK 282
+ LS L+ K
Sbjct: 216 VAERLSQLMMK 226
>pdb|1BC3|A Chain A, Recombinant Rat Annexin V, Triple Mutant (T72k, S144k,
S228k)
Length = 319
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 24/168 (14%)
Query: 130 DDVKKILSEKYGNMSVAELKENKLNED------LMEADVCMTVRLQIIYNKL--SIRSVR 181
+D+K L K+ + VA +K ++L + L A V +II ++ +R+++
Sbjct: 65 NDMKSELKGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIK 124
Query: 182 SAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSV----IELSK----ERGHVL 233
A+EE GS L+ D K Q+ + P ++ +EL + G +
Sbjct: 125 QAYEEEYGSNLEDDVVGDTKGYYQRMLVVLLQANRDPDTAIDDAQVELDAQALFQAGELK 184
Query: 234 WTTIDGKEVGSIQSKLL--CRSLLDLYIG------EEPFDRKAKEDIE 273
W T + K + + ++ + R + D Y+ EE DR+ K ++E
Sbjct: 185 WGTDEEKFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETKGNLE 232
>pdb|1BC1|A Chain A, Recombinant Rat Annexin V, Quadruple Mutant (T72k, S144k,
S228k, S303k)
Length = 319
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 24/168 (14%)
Query: 130 DDVKKILSEKYGNMSVAELKENKLNED------LMEADVCMTVRLQIIYNKL--SIRSVR 181
+D+K L K+ + VA +K ++L + L A V +II ++ +R+++
Sbjct: 65 NDMKSELKGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIK 124
Query: 182 SAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSV----IELSK----ERGHVL 233
A+EE GS L+ D K Q+ + P ++ +EL + G +
Sbjct: 125 QAYEEEYGSNLEDDVVGDTKGYYQRMLVVLLQANRDPDTAIDDAQVELDAQALFQAGELK 184
Query: 234 WTTIDGKEVGSIQSKLL--CRSLLDLYIG------EEPFDRKAKEDIE 273
W T + K + + ++ + R + D Y+ EE DR+ K ++E
Sbjct: 185 WGTDEEKFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETKGNLE 232
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 217 IPKGSVIELSKERGHVLWTTIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAK 269
+P+GS + L ++ + I G VG +KLL ++ +D+ + E DR+A+
Sbjct: 15 VPRGSHMNLLSDKNVAI---IGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR 64
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 217 IPKGSVIELSKERGHVLWTTIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAK 269
+P+GS + L ++ + I G VG +KLL ++ +D+ + E DR+A+
Sbjct: 15 VPRGSHMNLLSDKNVAI---IGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR 64
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 217 IPKGSVIELSKERGHVLWTTIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAK 269
+P+GS + L ++ + I G VG +KLL ++ +D+ + E DR+A+
Sbjct: 15 VPRGSHMNLLSDKNVAI---IGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR 64
>pdb|3QBR|A Chain A, Bakbh3 In Complex With Sja
pdb|3QBR|X Chain X, Bakbh3 In Complex With Sja
Length = 179
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 183 AFEESVGSRLQKFGGSDNKELLQKFTSQFKDE 214
AF + RL K G SD ++L K TSQ+ DE
Sbjct: 127 AFLRILVLRLSKHGHSDAIQMLIKTTSQYSDE 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,994,233
Number of Sequences: 62578
Number of extensions: 256624
Number of successful extensions: 668
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 9
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)