Query 023433
Match_columns 282
No_of_seqs 156 out of 570
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 06:43:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4doo_A Chalcone-flavanone isom 100.0 1.2E-48 4.2E-53 345.5 25.6 201 80-280 2-203 (205)
2 4dol_A AT1G53520, 94270-95700, 100.0 5.3E-43 1.8E-47 311.7 20.3 195 80-280 11-216 (217)
3 4doi_A Chalcone--flavonone iso 100.0 8.6E-42 2.9E-46 308.7 19.5 194 84-282 19-226 (246)
4 1eyq_A Chalcone-flavonone isom 100.0 1.8E-40 6.1E-45 296.8 19.9 192 87-282 10-215 (222)
5 4dok_A Similarity to chalcone- 100.0 2.9E-40 1E-44 292.6 19.4 189 88-280 8-207 (208)
6 3uep_A YSCQ-C, type III secret 74.8 5.6 0.00019 30.2 5.5 27 217-243 40-66 (96)
7 1o6a_A Putative flagellar moto 69.8 7.4 0.00025 29.3 5.1 26 217-242 40-65 (96)
8 1o9y_A HRCQ2; secretory protei 66.9 5.7 0.00019 29.2 3.8 27 217-243 36-62 (84)
9 2e63_A KIAA1787 protein; struc 53.3 13 0.00044 31.0 4.1 29 217-245 118-146 (170)
10 2yue_A Protein neuralized; str 33.0 53 0.0018 27.2 4.8 28 218-245 107-134 (168)
11 2yyo_A SPRY domain-containing 31.6 59 0.002 26.5 4.8 30 216-245 100-135 (171)
12 2v73_A CBM40, putative EXO-alp 28.5 56 0.0019 27.8 4.2 28 221-248 108-135 (191)
13 2oka_A Hypothetical protein; P 21.2 1.7E+02 0.006 22.2 5.4 34 205-243 27-60 (104)
No 1
>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}
Probab=100.00 E-value=1.2e-48 Score=345.52 Aligned_cols=201 Identities=67% Similarity=1.075 Sum_probs=190.8
Q ss_pred CCceeccCCCccCCCcccCCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccCCchhHhhhhh-hHHHHh
Q 023433 80 SATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLM 158 (282)
Q Consensus 80 ~~~~~E~~TGv~FP~~l~~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~~s~~el~~~~-~~~~ll 158 (282)
++.++||+||++||++++.+++|+|+|+|++.|+|+++||||++|||+++.+++++|+.||.+++++||.+++ |+++|+
T Consensus 2 ~~~~vep~tgv~FP~~~~~~~~L~G~GvR~~~i~~~~~ikvYa~GlYl~~~~~~~~L~~k~~~~~~~el~~~~~~~~~il 81 (205)
T 4doo_A 2 DESVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDLM 81 (205)
T ss_dssp -CCEECTTTCCEECSEETTTEEEEEEEEEEEECSTTCEEEEEEEEEEEEHHHHHHHHHHHSTTCCHHHHHTCTTHHHHHH
T ss_pred CCccccCCcCCcCCCccCCCceEEEeeeeEEEEeeccceEEEEEEEEeCHHHHHHHHHhhhcCCCHHHHcccHHHHHHHH
Confidence 4669999999999999988899999999999999877899999999999998988999999999999999888 999999
Q ss_pred hCCcceEEEEEEEecCCChHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccccCCCCCCCEEEEEEecCCEEEEEEC
Q 023433 159 EADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTID 238 (282)
Q Consensus 159 ~~~~~~~lrL~~~~R~v~~~~l~daf~~sl~~rl~~~~~~~~~~~L~~f~~~F~~~~kl~kGd~i~~~~~p~~~l~v~~n 238 (282)
+++.+|++||++++|+++.++++++|+++++.|+++.+..+.+++|++|.++|+++++++|||+|+|+|.|++++++++|
T Consensus 82 ~~~~~k~iri~~~~~~i~~~~~~da~~~~i~~~~~~~~~~~~~~~l~~f~~~F~~~~~~~kGd~i~~~~~p~~~l~~~~~ 161 (205)
T 4doo_A 82 EADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDNDELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAIE 161 (205)
T ss_dssp HSCCCEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHGGGTTCCCCCTTCEEEEEEETTTEEEEEET
T ss_pred cCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhccCCCCCCCCEEEEEEcCCCcEEEEEC
Confidence 99999999999985689999999999999999999988777899999999999877788999999999999999999999
Q ss_pred CEEEEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q 023433 239 GKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLI 280 (282)
Q Consensus 239 G~~~G~I~s~~f~~Alf~IwLG~~Pvsp~lK~~llg~l~~ll 280 (282)
|+++|+|+++.|++|+|+||||++|+||++|++|++++++|.
T Consensus 162 g~~~g~I~~~~f~~al~~iwLG~~pvsp~lk~~l~~~l~~l~ 203 (205)
T 4doo_A 162 GNHVGSVKSHLLCRSILDLYIGEEPFDKNAREDFLDNAASLA 203 (205)
T ss_dssp TEEEEEEECHHHHHHHHHHHHSSSCSCHHHHHHHHHHHHHHT
T ss_pred CeeeEEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999985
No 2
>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana}
Probab=100.00 E-value=5.3e-43 Score=311.70 Aligned_cols=195 Identities=22% Similarity=0.386 Sum_probs=178.0
Q ss_pred CCceeccCCCccCCCccc-----CCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccCCchhHhhhhh-h
Q 023433 80 SATVVESKTGTSFPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-L 153 (282)
Q Consensus 80 ~~~~~E~~TGv~FP~~l~-----~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~~s~~el~~~~-~ 153 (282)
...++||+||++||+++. ++++|+|+|+|+|.|.|+ +||||++|||+++..+ .+|+ +|.+.++++|.+++ |
T Consensus 11 ~~~v~e~~tgv~fp~~~~~~~~~~~l~L~G~GvR~~~i~~~-~ikvYa~glYl~~~~~-~~L~-~~~~~~~~el~~~~~~ 87 (217)
T 4dol_A 11 EDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAII-GVKVYAAGYYVNESIL-SGLS-AWTGRSADEIQRDSSL 87 (217)
T ss_dssp CCEEECTTTCCEEESEECCTTCSSCEEEEEEEEEEEESSSS-EEEEEEEEEEECGGGT-GGGG-GGTTCCHHHHHTCHHH
T ss_pred cceeecCCCCccCCCcccCCCCCCceEEEEEEEEEEEEeee-EEEEEEEEEEcCHHHH-HHHH-hhcCCCHHHHcccHHH
Confidence 347899999999999984 579999999999987543 7999999999998855 4576 89999999999888 9
Q ss_pred HHHHhhCCcceEEEEEEEecCCChHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccccCCCCCCCEEEEEEecCCEE
Q 023433 154 NEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVL 233 (282)
Q Consensus 154 ~~~ll~~~~~~~lrL~~~~R~v~~~~l~daf~~sl~~rl~~~~~~~~~~~L~~f~~~F~~~~kl~kGd~i~~~~~p~~~l 233 (282)
+++|++.+.+|+|||+|+ |+++++++++++++++++||++.+ .+.+++|++|.++|++. +++|||+|+|+|.|++++
T Consensus 88 ~~~il~~~~~k~lri~~~-R~i~~~~l~~a~~e~i~~~~~~~~-~~~~~~l~~f~~~F~d~-~v~kGd~i~~~~~p~~~l 164 (217)
T 4dol_A 88 FVSIFQAQAEKSLQIVLV-RDVDGKTFWDALDEAISPRIKSPS-SEDTTALSTFCCIFQNR-PLNKGSVILLTWINTSNM 164 (217)
T ss_dssp HHHHHHSSSCEEEEEEES-SCBCHHHHHHHHHHHHTTTCSSCC-HHHHHHHHHHHHHHTTC-CBCTTCEEEEEEEETTEE
T ss_pred HHHHHcCCCceEEEEEEE-ecCCHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHhCCC-cCCCCCEEEEEEcCCCCE
Confidence 999999999999999996 999999999999999999998765 36789999999999874 789999999999999999
Q ss_pred EEEEC--C---EEEEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q 023433 234 WTTID--G---KEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLI 280 (282)
Q Consensus 234 ~v~~n--G---~~~G~I~s~~f~~Alf~IwLG~~Pvsp~lK~~llg~l~~ll 280 (282)
++++| | +.+|+|+|++|++|||+||||++|+||++|++|+.++++||
T Consensus 165 ~i~~~~~g~~~~~~g~I~~~~f~~A~~~iwLG~~p~sp~lk~~L~~~l~~l~ 216 (217)
T 4dol_A 165 LVSVSSGGLPTNVDATIESGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTL 216 (217)
T ss_dssp EEEEESSSCCCSCCEEEECHHHHHHHHHHHHSSSCSCHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCccccceeEeCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhh
Confidence 99996 5 56899999999999999999999999999999999999986
No 3
>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}
Probab=100.00 E-value=8.6e-42 Score=308.69 Aligned_cols=194 Identities=21% Similarity=0.289 Sum_probs=177.2
Q ss_pred eccCCCccCCCccc-----CCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccCCchhHhhhhh-hHHHH
Q 023433 84 VESKTGTSFPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDL 157 (282)
Q Consensus 84 ~E~~TGv~FP~~l~-----~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~~s~~el~~~~-~~~~l 157 (282)
++. +||+||+++. +.|+|+|+|+|++.|.|+ +||||++|||+++. +..+|+.||.|++++||.++. |+++|
T Consensus 19 v~V-~gV~FP~~v~~p~~~~~L~L~GaGvR~k~I~~~-~vKvYAiGlYl~~~-~~~~L~~kwkgk~~~eL~~~~~ff~~i 95 (246)
T 4doi_A 19 LHV-DSVTFVPSVKSPASSNPLFLGGAGVRGLDIQGK-FVIFTVIGVYLEGN-AVPSLSVKWKGKTTEELTESIPFFREI 95 (246)
T ss_dssp EEE-TTEEECSEEECTTTCCEEEEEEEEEEEEEETTE-EEEEEEEEEEECTT-HHHHHHHHHTTCCHHHHHHCHHHHHHH
T ss_pred eEE-CceECCCeeccCCCCCceeEecceeeceeeeee-EEEEEEEEEEechh-HHHHhhhhhcCCCHHHhcccHHHHHHH
Confidence 443 8999999983 579999999999987765 59999999999987 677899999999999999999 99999
Q ss_pred hhCCcceEEEEEEEecCCChHHHHHHHHHHHHHhhhcCCCC--CcHHHHHHHHHhccccCCCCCCCEEEEEEecCCEEEE
Q 023433 158 MEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGS--DNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWT 235 (282)
Q Consensus 158 l~~~~~~~lrL~~~~R~v~~~~l~daf~~sl~~rl~~~~~~--~~~~~L~~f~~~F~~~~kl~kGd~i~~~~~p~~~l~v 235 (282)
++.+.+|+|||+++ |+++++++++++++++++||++.+.. ++++.|++|.++|++. .+++|+.|+|+|.|++++++
T Consensus 96 l~~p~eK~lrl~~i-r~l~g~~~~~al~e~l~~rlk~~g~~~~~e~~aL~~F~~~F~~~-~l~kGs~I~~~~~p~g~l~i 173 (246)
T 4doi_A 96 VTGAFEKFIKVTMK-LPLTGQQYSEKVTENCVAIWKQLGLYTDCEAKAVEKFLEIFKEE-TFPPGSSILFALSPTGSLTV 173 (246)
T ss_dssp HHCSSCEEEEEEES-SCEEHHHHHHHHTTTHHHHHHHHTCCCHHHHHHHHHHHHHHTTC-EECTTCEEEEEECTTSEEEE
T ss_pred HcCCcceEEEEEEE-ecCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccC-cCCCCCEEEEEEeCCCcEEE
Confidence 99999999999997 99999999999999999999886544 4688999999999875 78999999999999999888
Q ss_pred EE--CCE----EEEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhC
Q 023433 236 TI--DGK----EVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK 282 (282)
Q Consensus 236 ~~--nG~----~~G~I~s~~f~~Alf~IwLG~~Pvsp~lK~~llg~l~~ll~~ 282 (282)
.+ ||+ ..++|+++.||+|+|++|||++|+||++|+++++++++||++
T Consensus 174 ~~s~~G~~p~~~~~~I~s~~l~~All~~ylG~~pVsp~lK~sla~~la~ll~~ 226 (246)
T 4doi_A 174 AFSKDDSIPETGIAVIENKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLMMK 226 (246)
T ss_dssp EEESSSCCCSSCSEEEECHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHHTT
T ss_pred EEecCCccccccccccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhc
Confidence 87 997 468999999999999999999999999999999999999975
No 4
>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A*
Probab=100.00 E-value=1.8e-40 Score=296.76 Aligned_cols=192 Identities=24% Similarity=0.319 Sum_probs=174.1
Q ss_pred CCCccCCCccc-----CCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccCCchhHhhhhh-hHHHHhhC
Q 023433 87 KTGTSFPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEA 160 (282)
Q Consensus 87 ~TGv~FP~~l~-----~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~~s~~el~~~~-~~~~ll~~ 160 (282)
.||++||+++. ++|+|+|+|+|+|.|.| ++||||++|||+++. +.++|..||.|.+++||.++. |+++|++.
T Consensus 10 v~gv~FP~~~~~p~~~~~L~L~GaGvR~k~i~~-~~iKvYa~GlYl~~~-~~~~L~~k~kg~~a~el~~~~~f~~~li~~ 87 (222)
T 1eyq_A 10 VENLEYPAVVTSPVTGKSYFLGGAGERGLTIEG-NFIKFTAIGVYLEDI-AVASLAAKWKGKSSEELLETLDFYRDIISG 87 (222)
T ss_dssp ETTEEECSEEECTTTCCEEEEEEEEEEEEEETT-EEEEEEEEEEEEETT-HHHHHHHHHTTCCHHHHHTCHHHHHHHHHC
T ss_pred EcceECCCccccCCCCCceEEeeeEEEEEEeec-eEEEEEEEEEEeCHH-HhhHhhhhhcCCCHHHhcccHHHHHHHHcC
Confidence 38999999884 57999999999999765 469999999999986 566888999999999999998 99999999
Q ss_pred CcceEEEEEEEecCCChHHHHHHHHHHHHHhhhcCCCC--CcHHHHHHHHHhccccCCCCCCCEEEEEEecCCEEEE--E
Q 023433 161 DVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGS--DNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWT--T 236 (282)
Q Consensus 161 ~~~~~lrL~~~~R~v~~~~l~daf~~sl~~rl~~~~~~--~~~~~L~~f~~~F~~~~kl~kGd~i~~~~~p~~~l~v--~ 236 (282)
+.+|++||+++ |+++++++++++++++++||++.+.. ++++.|++|.++|+++ .++|||+|+|+|.|++++.+ +
T Consensus 88 ~~~k~irl~~i-~~v~g~~~~~a~~e~~~~~~~~~g~~~~~e~~~L~~f~~~F~~~-~~~kG~~i~~~~~p~g~l~is~~ 165 (222)
T 1eyq_A 88 PFEKLIRGSKI-RELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPV-NFPPGASVFYRQSPDGILGLSFS 165 (222)
T ss_dssp SSCEEEEEEES-SCEEHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-EECTTCEEEEEEETTTEEEEEEE
T ss_pred CCceEEEEEEE-eCCCHHHHHHHHHHHHHHHHhccCccccchHHHHHHHHHHhCCC-CCCCCCEEEEEEcCCCceEEEEE
Confidence 99999999997 89999999999999999999876543 4578999999999765 48899999999999997766 5
Q ss_pred ECCE----EEEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhC
Q 023433 237 IDGK----EVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK 282 (282)
Q Consensus 237 ~nG~----~~G~I~s~~f~~Alf~IwLG~~Pvsp~lK~~llg~l~~ll~~ 282 (282)
.||+ ..++|+++.||+|+|++|||++|+||++|+++++++++||++
T Consensus 166 ~~g~~p~~~~~~I~~~~~~~Al~~i~lG~~pvsp~lK~sl~~~l~~ll~~ 215 (222)
T 1eyq_A 166 PDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALLNE 215 (222)
T ss_dssp SSSSCCSSCSEEEECHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHC
T ss_pred eCCccccccccccCCHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhh
Confidence 6898 789999999999999999999999999999999999999974
No 5
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=100.00 E-value=2.9e-40 Score=292.64 Aligned_cols=189 Identities=21% Similarity=0.299 Sum_probs=173.3
Q ss_pred CCccCCCccc--CCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccCCchhHhhhhh-hHHHHhhCCcce
Q 023433 88 TGTSFPSVLG--GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCM 164 (282)
Q Consensus 88 TGv~FP~~l~--~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~~s~~el~~~~-~~~~ll~~~~~~ 164 (282)
.||+||+.+. +.|+|+|+|+|++.|.|+ +||||++|||+++++++.+| .||.+.+++||.++. |+++|++.+.+|
T Consensus 8 ~gv~FP~~~~~~~~L~L~GaGvR~~~I~~~-~iKvYa~GlYl~~~~~~~~l-~kwk~~~~~eL~~~~~f~~~ii~~p~eK 85 (208)
T 4dok_A 8 HEVPFPPQIITSKPLSLLGQGITDIEIHFL-QVKFTAIGVYLDPSDVKTHL-DNWKGKTGKELAGDDDFFDALASAEMEK 85 (208)
T ss_dssp TTEEECSEEESSSEEEEEEEEEEEEEETTE-EEEEEEEEEEECHHHHHHHC-GGGTTCCHHHHHTCHHHHHHHHHSSSCE
T ss_pred ccEECCccccCCCcceeeeeeeeeEeeeee-EEEEEEEEEEecHHHHHHHH-hhhcCCCHHHHccchHHHHHHhcCcccc
Confidence 7999999885 679999999999988765 69999999999998899888 899999999999999 999999999999
Q ss_pred EEEEEEEecCCChHHHHHHHHHHHHHhhhcCCCC--CcHHHHHHHHHhccccCCCCCCCEEEEEEecC-CEEE--EEECC
Q 023433 165 TVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGS--DNKELLQKFTSQFKDEYKIPKGSVIELSKERG-HVLW--TTIDG 239 (282)
Q Consensus 165 ~lrL~~~~R~v~~~~l~daf~~sl~~rl~~~~~~--~~~~~L~~f~~~F~~~~kl~kGd~i~~~~~p~-~~l~--v~~nG 239 (282)
.+||+++ |+++++++++++++++++||++.+.. .+++.|++|.++|++. .++||++|+|+|.|+ +.|+ +..||
T Consensus 86 ~iri~~i-r~l~g~~~~~a~~e~~~~~~~~~~~~~~~e~~aL~~f~~~F~~~-~~~~G~~I~~~~~p~~G~L~i~~s~~G 163 (208)
T 4dok_A 86 VIRVVVI-KEIKGAQYGVQLENTVRDRLAEEDKYEEEEETELEKVVGFFQSK-YFKANSVITYHFSAKDGICEIGFETEG 163 (208)
T ss_dssp EEEEEES-SCEEHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHTC-EECTTCEEEEEECSSSCCEEEEEECTT
T ss_pred eEEEEEE-ecCCcHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHhccC-CCCCCCEEEEEEeCCCCeEEEEEEeCC
Confidence 9999997 99999999999999999999998764 4689999999999875 799999999999988 5555 55699
Q ss_pred EEEE--EECCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHhh
Q 023433 240 KEVG--SIQSKLLCRSLLDLYI-GEEPFDRKAKEDIELNLSSLI 280 (282)
Q Consensus 240 ~~~G--~I~s~~f~~Alf~IwL-G~~Pvsp~lK~~llg~l~~ll 280 (282)
++.+ +|+|+.||+|+|++|| |++|+||++|+++..++++||
T Consensus 164 ~~~~~~~I~~~~l~~All~~yl~G~~pvsp~lK~sla~~l~~ll 207 (208)
T 4dok_A 164 KEEEKLKVENANVVGMMQRWYLSGSRGVSPSTIVSIADSISAVL 207 (208)
T ss_dssp SCCEEEEECCHHHHHHHHHHHSCTTTCSCHHHHHHHHHHHHHHH
T ss_pred EeccccccCCHHHHHHHHHHeeCCCCCCCHHHHHHHHHHHHHhh
Confidence 8664 7999999999999999 999999999999999999987
No 6
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=74.83 E-value=5.6 Score=30.17 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.7
Q ss_pred CCCCCEEEEEEecCCEEEEEECCEEEE
Q 023433 217 IPKGSVIELSKERGHVLWTTIDGKEVG 243 (282)
Q Consensus 217 l~kGd~i~~~~~p~~~l~v~~nG~~~G 243 (282)
+++||.|.+....+..+.+++||+.++
T Consensus 40 L~~GdVI~Ld~~~~~~v~i~vng~~i~ 66 (96)
T 3uep_A 40 LEPGSLIDLTTPVDGEVRLLANGRLLG 66 (96)
T ss_dssp CCTTCEEEEEEESSCEEEEEETTEEEE
T ss_pred CCCCCEEEeCCCCCCcEEEEECCEEEE
Confidence 359999999999899999999998753
No 7
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=69.83 E-value=7.4 Score=29.29 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=22.8
Q ss_pred CCCCCEEEEEEecCCEEEEEECCEEE
Q 023433 217 IPKGSVIELSKERGHVLWTTIDGKEV 242 (282)
Q Consensus 217 l~kGd~i~~~~~p~~~l~v~~nG~~~ 242 (282)
+++||.|.+....+..+.+++||+.+
T Consensus 40 L~~GdVI~Ld~~~~~~v~v~v~g~~i 65 (96)
T 1o6a_A 40 MIHGSIIELDKLTGEPVDILVNGKLI 65 (96)
T ss_dssp CCTTCEEEEEEETTCCEEEEETTEEE
T ss_pred CCCCCEEEeCCCCCCcEEEEECCEEE
Confidence 35999999999888899999999875
No 8
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=66.90 E-value=5.7 Score=29.21 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=23.0
Q ss_pred CCCCCEEEEEEecCCEEEEEECCEEEE
Q 023433 217 IPKGSVIELSKERGHVLWTTIDGKEVG 243 (282)
Q Consensus 217 l~kGd~i~~~~~p~~~l~v~~nG~~~G 243 (282)
+++||.|.+...-+..+.+++||+.++
T Consensus 36 L~~GdVi~Ld~~~~e~v~i~vng~~~~ 62 (84)
T 1o9y_A 36 LDAGTILEVTGISPGHATLCHGEQVVA 62 (84)
T ss_dssp CCTTCEEEECSSCTTEEEEEETTEEEE
T ss_pred CCCCCEEEeCCCCCCCEEEEECCEEEE
Confidence 469999999987678999999998754
No 9
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.27 E-value=13 Score=31.02 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=25.9
Q ss_pred CCCCCEEEEEEecCCEEEEEECCEEEEEE
Q 023433 217 IPKGSVIELSKERGHVLWTTIDGKEVGSI 245 (282)
Q Consensus 217 l~kGd~i~~~~~p~~~l~v~~nG~~~G~I 245 (282)
+..||.+.|.+.+++.+.+++||...|..
T Consensus 118 l~~Gd~ig~~~~~~G~l~~~iNg~~~g~~ 146 (170)
T 2e63_A 118 LGEGDRVGVERTVAGELRLWVNGRDCGVA 146 (170)
T ss_dssp CCSSCCEEEEECTTSCEEEEESSCEEEEE
T ss_pred cCCCCEEEEEEcCCcEEEEEECCccceee
Confidence 46999999999999999999999887764
No 10
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=33.04 E-value=53 Score=27.16 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=24.8
Q ss_pred CCCCEEEEEEecCCEEEEEECCEEEEEE
Q 023433 218 PKGSVIELSKERGHVLWTTIDGKEVGSI 245 (282)
Q Consensus 218 ~kGd~i~~~~~p~~~l~v~~nG~~~G~I 245 (282)
..||.+.|..++++.+.+.+||...|..
T Consensus 107 ~~g~~l~f~v~~~G~l~~~iNg~~~g~~ 134 (168)
T 2yue_A 107 EKDNILYYYVNGAGDVIYGINNEEKGVI 134 (168)
T ss_dssp CSSCEEEEEECTTSEEEEEESSCEEEEE
T ss_pred cCCCEEEEEEcCCCEEEEEECCCccEEE
Confidence 5799999999999999999999887654
No 11
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=31.55 E-value=59 Score=26.50 Aligned_cols=30 Identities=33% Similarity=0.358 Sum_probs=25.4
Q ss_pred CCCCCCEEEEEEecC------CEEEEEECCEEEEEE
Q 023433 216 KIPKGSVIELSKERG------HVLWTTIDGKEVGSI 245 (282)
Q Consensus 216 kl~kGd~i~~~~~p~------~~l~v~~nG~~~G~I 245 (282)
++.+||+|-.-++.+ +.+.++.||+.+|..
T Consensus 100 ~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~a 135 (171)
T 2yyo_A 100 KCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGST 135 (171)
T ss_dssp CCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEE
T ss_pred CCCCCCEEEEEEEeccCCCCcEEEEEEECCEEcCce
Confidence 457999999999864 688999999999874
No 12
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens}
Probab=28.53 E-value=56 Score=27.80 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=22.7
Q ss_pred CEEEEEEecCCEEEEEECCEEEEEECCH
Q 023433 221 SVIELSKERGHVLWTTIDGKEVGSIQSK 248 (282)
Q Consensus 221 d~i~~~~~p~~~l~v~~nG~~~G~I~s~ 248 (282)
-+++|+++.+.++++|+||+.+.+.+.+
T Consensus 108 ntvaf~~d~~~~~~ly~NG~~V~t~~~~ 135 (191)
T 2v73_A 108 NTLALKIEKGIGAKIFLNGSLVKTVSDP 135 (191)
T ss_dssp EEEEEEEETTTEEEEEETTEEEEEEECT
T ss_pred EEEEEEEcCCccEEEEECCEEEEEEecc
Confidence 3567777777899999999999987544
No 13
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=21.20 E-value=1.7e+02 Score=22.22 Aligned_cols=34 Identities=32% Similarity=0.420 Sum_probs=25.1
Q ss_pred HHHHHhccccCCCCCCCEEEEEEecCCEEEEEECCEEEE
Q 023433 205 QKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKEVG 243 (282)
Q Consensus 205 ~~f~~~F~~~~kl~kGd~i~~~~~p~~~l~v~~nG~~~G 243 (282)
+++.+.|++++ ..+.+.-..+|..+|++||+.+-
T Consensus 27 qeLl~tF~~~l-----~~v~l~P~~~G~FEV~vng~lV~ 60 (104)
T 2oka_A 27 QELLSTFADDL-----GKVCLEPGTGGVFRITCDGVQVW 60 (104)
T ss_dssp HHHHHHSTTTC-----SEEEEEEECTTCEEEEETTEEEE
T ss_pred HHHHHHcCccc-----ceEEEEeCCCceEEEEECCEEEE
Confidence 56777887653 25677666778999999998763
Done!