Citrus Sinensis ID: 023436

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
MRGRRCHSTRHPDMSGSGSGSGLESEAESETMRCISCREEYGTRDAGTCKECYEEASETEEELKREIEDLKAKVAFLRFWSPLDHHHHHHSSRSHCGPCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQVNTAALKDSPMKQ
cccccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHccEEEEEcccccccccccccccccccccccEEEEccccccccccccccHHHHHHHccccHHHHHHccccccccccccEEEccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHccccccccccccccc
cccccccccccccccccccccccccccccccEEEEccHHHccccccccHHHHHHHHcccHHHHHHHccccccccccccccccHHHHHHccHHHHHHcccccEEEEEEccccccccccccccHHHHEEEcccHHHHHHHcccccHccccEEEEccccHHHHHHHHHHHHccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccHHHHHccHHcHHHHHHHHHHHHHccccccccccccccc
mrgrrchstrhpdmsgsgsgsgleseaeseTMRCIScreeygtrdagtckECYEEASETEEELKREIEDLKAKVAFLrfwspldhhhhhhssrshcgpcyTDVVLVAasesgpagpavpvpahkavlvSRSPVFKAMLDNemeesrsgtikisDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQvntaalkdspmkq
mrgrrchstrhpdmsgsgsgsgleseAESETMRCISCreeygtrdagtcKECYEEASETEEELKREIEDLKAKVAFLRFWSPLDHHHHHHSSRSHCGPCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDnemeesrsgtikisdVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEyrelvekdprLVVEIYEAYlskqvntaalkdspmkq
MRGRRCHSTRHPDMsgsgsgsgleseaeseTMRCISCREEYGTRDAGTCKecyeeaseteeelkreIEDLKAKVAFLRFWSPLDhhhhhhssrshCGPCYTDVVLVAASESGpagpavpvpahkavlvSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQVNTAALKDSPMKQ
*********************************CISCREEYGTRDAGTCKECY***************DLKAKVAFLRFW***************CGPCYTDVVLVAA***************KAVLVS***VF**************TIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQV************
*****************************ETMRCISCR***GTRDAGTCKECYEEA***************************************CGPCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAY*****************
********************************RCISCREEYGTRDAGTCKEC************REIEDLKAKVAFLRFWSPLD************GPCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQVNTA*********
*****************************ETMRCISCREEYGTRDAGTCKECYEEASET**ELKR*IEDLKAKVAFLRFWSPLDHHHHHHSSRSHCGPCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ*************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRGRRCHSTRHPDMSGSGSGSGLESEAESETMRCISCREEYGTRDAGTxxxxxxxxxxxxxxxxxxxxxxxxxVAFLRFWSPLDHHHHHHSSRSHCGPCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQVNTAALKDSPMKQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query282 2.2.26 [Sep-21-2011]
Q6DBN1243 BTB/POZ domain-containing yes no 0.829 0.962 0.765 1e-100
P34568451 BTB and MATH domain-conta yes no 0.641 0.401 0.311 3e-22
Q6P8B3374 Speckle-type POZ protein yes no 0.524 0.395 0.364 6e-20
Q7ZX06374 Speckle-type POZ protein N/A no 0.524 0.395 0.364 6e-20
Q0IHH9374 Speckle-type POZ protein N/A no 0.524 0.395 0.364 6e-20
Q7T330374 Speckle-type POZ protein yes no 0.524 0.395 0.351 3e-19
Q5NVK7374 Speckle-type POZ protein yes no 0.524 0.395 0.358 4e-19
Q6ZWS8374 Speckle-type POZ protein yes no 0.524 0.395 0.358 4e-19
O43791374 Speckle-type POZ protein yes no 0.524 0.395 0.358 4e-19
Q0VCW1374 Speckle-type POZ protein yes no 0.524 0.395 0.358 4e-19
>sp|Q6DBN1|Y4845_ARATH BTB/POZ domain-containing protein At4g08455 OS=Arabidopsis thaliana GN=At4g08455 PE=1 SV=1 Back     alignment and function desciption
 Score =  363 bits (932), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/243 (76%), Positives = 207/243 (85%), Gaps = 9/243 (3%)

Query: 32  MRCISCREEYGTRDAGTCKECYEEASETEEELKREIEDLKAKVAFLRFWSPLDHHHHHHS 91
           MRCISCREEY  R+AGTCKECY EA ETEEELKREI+DLKAKVAFLR  S LDH     +
Sbjct: 1   MRCISCREEYLPRNAGTCKECYVEAGETEEELKREIDDLKAKVAFLRLSSSLDHGTSS-T 59

Query: 92  SRSHCGPCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIK 151
           SRS     +TDVVL+A SE     P  P+PAHK+VLVSRSPVFKAML+NEMEES SGTIK
Sbjct: 60  SRS-----FTDVVLIA-SEDNAGSP--PIPAHKSVLVSRSPVFKAMLENEMEESLSGTIK 111

Query: 152 ISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNS 211
           ISDVSYDALR FV YLYTAEACLDEQ+ACDLL ++EKYQVKHLK+YCE+FLV+KL+ DNS
Sbjct: 112 ISDVSYDALRTFVYYLYTAEACLDEQMACDLLVMSEKYQVKHLKSYCERFLVTKLSPDNS 171

Query: 212 VVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQVN 271
           ++ YAFAHQHNAK +L+AALS I +NMDKLTK EEY ELVEKDPRL+VEIYEAYLSKQVN
Sbjct: 172 LMTYAFAHQHNAKHVLDAALSQIVENMDKLTKREEYMELVEKDPRLIVEIYEAYLSKQVN 231

Query: 272 TAA 274
           TAA
Sbjct: 232 TAA 234
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|P34568|BAT43_CAEEL BTB and MATH domain-containing protein 43 OS=Caenorhabditis elegans GN=bath-43 PE=3 SV=2 Back     alignment and function description
>sp|Q6P8B3|SPOP_XENTR Speckle-type POZ protein OS=Xenopus tropicalis GN=spop PE=2 SV=1 Back     alignment and function description
>sp|Q7ZX06|SPOPA_XENLA Speckle-type POZ protein A OS=Xenopus laevis GN=spop-a PE=2 SV=1 Back     alignment and function description
>sp|Q0IHH9|SPOPB_XENLA Speckle-type POZ protein B OS=Xenopus laevis GN=spop-b PE=2 SV=1 Back     alignment and function description
>sp|Q7T330|SPOP_DANRE Speckle-type POZ protein OS=Danio rerio GN=spop PE=2 SV=1 Back     alignment and function description
>sp|Q5NVK7|SPOP_PONAB Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1 Back     alignment and function description
>sp|Q6ZWS8|SPOP_MOUSE Speckle-type POZ protein OS=Mus musculus GN=Spop PE=1 SV=1 Back     alignment and function description
>sp|O43791|SPOP_HUMAN Speckle-type POZ protein OS=Homo sapiens GN=SPOP PE=1 SV=1 Back     alignment and function description
>sp|Q0VCW1|SPOP_BOVIN Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
224062980273 predicted protein [Populus trichocarpa] 0.946 0.978 0.784 1e-119
255558542267 protein binding protein, putative [Ricin 0.946 1.0 0.795 1e-118
449444076267 PREDICTED: BTB/POZ domain-containing pro 0.946 1.0 0.729 1e-112
224085012251 predicted protein [Populus trichocarpa] 0.865 0.972 0.855 1e-112
42570060243 BTB/POZ domain-containing protein [Arabi 0.829 0.962 0.765 5e-98
297809027243 BTB/POZ domain-containing protein [Arabi 0.829 0.962 0.753 6e-97
3377822331 contains similarity to Caenorhabditis el 0.886 0.755 0.681 3e-96
388521233253 unknown [Medicago truncatula] 0.808 0.901 0.688 5e-92
225459685264 PREDICTED: BTB/POZ domain-containing pro 0.851 0.909 0.788 3e-91
302141753241 unnamed protein product [Vitis vinifera] 0.851 0.995 0.784 3e-91
>gi|224062980|ref|XP_002300959.1| predicted protein [Populus trichocarpa] gi|222842685|gb|EEE80232.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/279 (78%), Positives = 242/279 (86%), Gaps = 12/279 (4%)

Query: 1   MRGRRCHSTRHPDMSGSGSGSGLESEAESETMRCISCREEYGTRDAGTCKECYEEASETE 60
           MRG  C ++R          +  E++++SETMRCISC+E Y   DAGTCKECYEEAS+TE
Sbjct: 1   MRGHLCTASR--------VDTECETDSDSETMRCISCKEYYSRCDAGTCKECYEEASDTE 52

Query: 61  EELKREIEDLKAKVAFLRFWSPLDHHHHHHSSRSHCGPCYTDVVLVAASESGPAG-PAVP 119
           EELKREIEDLKAKVAFLRFWSPLD H  H   RS  GPC+TDVVL+A+S+ G  G P+VP
Sbjct: 53  EELKREIEDLKAKVAFLRFWSPLDLHITH---RSPAGPCFTDVVLIASSDDGFIGTPSVP 109

Query: 120 VPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLA 179
           VPAHKAVLVSRSPVFKAML+NEMEESRSGTIKISDVSYDALR+FVNYLYTAEACLDEQ+A
Sbjct: 110 VPAHKAVLVSRSPVFKAMLENEMEESRSGTIKISDVSYDALRSFVNYLYTAEACLDEQMA 169

Query: 180 CDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMD 239
           CDLL LAEKY+VKHLKAYCEKFLVSKLNWDNSV++YAFAHQHNAK +LE ALSLITDNMD
Sbjct: 170 CDLLVLAEKYEVKHLKAYCEKFLVSKLNWDNSVMSYAFAHQHNAKHMLETALSLITDNMD 229

Query: 240 KLTKCEEYRELVEKDPRLVVEIYEAYLSKQVNTAALKDS 278
           KLTK +EY ELVE+DPRLVVEIYEAYLSKQVNTAA KDS
Sbjct: 230 KLTKRKEYIELVEEDPRLVVEIYEAYLSKQVNTAAHKDS 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255558542|ref|XP_002520296.1| protein binding protein, putative [Ricinus communis] gi|223540515|gb|EEF42082.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449444076|ref|XP_004139801.1| PREDICTED: BTB/POZ domain-containing protein At4g08455-like [Cucumis sativus] gi|449507436|ref|XP_004163032.1| PREDICTED: BTB/POZ domain-containing protein At4g08455-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224085012|ref|XP_002307463.1| predicted protein [Populus trichocarpa] gi|222856912|gb|EEE94459.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|42570060|ref|NP_680660.2| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|75254656|sp|Q6DBN1.1|Y4845_ARATH RecName: Full=BTB/POZ domain-containing protein At4g08455 gi|50198819|gb|AAT70442.1| At4g08455 [Arabidopsis thaliana] gi|56381961|gb|AAV85699.1| At4g08455 [Arabidopsis thaliana] gi|332657244|gb|AEE82644.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297809027|ref|XP_002872397.1| BTB/POZ domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318234|gb|EFH48656.1| BTB/POZ domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|3377822|gb|AAC28195.1| contains similarity to Caenorhabditis elegans MEL-26 (GB:U67737) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388521233|gb|AFK48678.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225459685|ref|XP_002285888.1| PREDICTED: BTB/POZ domain-containing protein At4g08455-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302141753|emb|CBI18956.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
TAIR|locus:504955382243 AT4G08455 [Arabidopsis thalian 0.829 0.962 0.646 5.1e-74
UNIPROTKB|Q0IHH9374 spop-b "Speckle-type POZ prote 0.5 0.377 0.347 9.8e-19
UNIPROTKB|Q6P8B3374 spop "Speckle-type POZ protein 0.5 0.377 0.347 9.8e-19
UNIPROTKB|Q7ZX06374 spop-a "Speckle-type POZ prote 0.5 0.377 0.347 9.8e-19
RGD|1311613335 Spop "speckle-type POZ protein 0.5 0.420 0.340 3e-18
UNIPROTKB|E1C049374 SPOP "Uncharacterized protein" 0.5 0.377 0.340 6.2e-18
UNIPROTKB|Q0VCW1374 SPOP "Speckle-type POZ protein 0.5 0.377 0.340 6.2e-18
UNIPROTKB|E2RS90374 SPOP "Uncharacterized protein" 0.5 0.377 0.340 6.2e-18
UNIPROTKB|O43791374 SPOP "Speckle-type POZ protein 0.5 0.377 0.340 6.2e-18
UNIPROTKB|Q5NVK7374 SPOP "Speckle-type POZ protein 0.5 0.377 0.340 6.2e-18
TAIR|locus:504955382 AT4G08455 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 157/243 (64%), Positives = 178/243 (73%)

Query:    32 MRCISCREEYGTRDAGTCKXXXXXXXXXXXXXXXXIEDLKAKVAFLRFWSPLDXXXXXXX 91
             MRCISCREEY  R+AGTCK                I+DLKAKVAFLR  S LD       
Sbjct:     1 MRCISCREEYLPRNAGTCKECYVEAGETEEELKREIDDLKAKVAFLRLSSSLDHGTSSTS 60

Query:    92 XXXXCGPCYTDVVLVAASESGXXXXXXXXXXXXXXXXSRSPVFKAMLDNEMEESRSGTIK 151
                     +TDVVL+A+ ++                 SRSPVFKAML+NEMEES SGTIK
Sbjct:    61 RS------FTDVVLIASEDNAGSPPIPAHKSVLV---SRSPVFKAMLENEMEESLSGTIK 111

Query:   152 ISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNS 211
             ISDVSYDALR FV YLYTAEACLDEQ+ACDLL ++EKYQVKHLK+YCE+FLV+KL+ DNS
Sbjct:   112 ISDVSYDALRTFVYYLYTAEACLDEQMACDLLVMSEKYQVKHLKSYCERFLVTKLSPDNS 171

Query:   212 VVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQVN 271
             ++ YAFAHQHNAK +L+AALS I +NMDKLTK EEY ELVEKDPRL+VEIYEAYLSKQVN
Sbjct:   172 LMTYAFAHQHNAKHVLDAALSQIVENMDKLTKREEYMELVEKDPRLIVEIYEAYLSKQVN 231

Query:   272 TAA 274
             TAA
Sbjct:   232 TAA 234
GO:0005737 "cytoplasm" evidence=ISM
GO:0005515 "protein binding" evidence=IPI
UNIPROTKB|Q0IHH9 spop-b "Speckle-type POZ protein B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P8B3 spop "Speckle-type POZ protein" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZX06 spop-a "Speckle-type POZ protein A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
RGD|1311613 Spop "speckle-type POZ protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C049 SPOP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VCW1 SPOP "Speckle-type POZ protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RS90 SPOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O43791 SPOP "Speckle-type POZ protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5NVK7 SPOP "Speckle-type POZ protein" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6DBN1Y4845_ARATHNo assigned EC number0.76540.82970.9629yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 9e-26
pfam00651101 pfam00651, BTB, BTB/POZ domain 2e-23
PHA03098 534 PHA03098, PHA03098, kelch-like protein; Provisiona 1e-07
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information 
 Score = 97.4 bits (243), Expect = 9e-26
 Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 8/105 (7%)

Query: 102 DVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALR 161
           DV LV   +           AHKAVL + SP FKA+  ++ +ES    I + DVS +  R
Sbjct: 1   DVTLVVGGKK--------FHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDDVSPEDFR 52

Query: 162 AFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKL 206
           A +N+LYT +  L E+   +LLELA+  Q+  L   CE+FL+  L
Sbjct: 53  ALLNFLYTGKLDLPEENVEELLELADYLQIPGLVELCEEFLLKLL 97

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 282
PHA02713 557 hypothetical protein; Provisional 99.96
PHA02790 480 Kelch-like protein; Provisional 99.95
PHA03098 534 kelch-like protein; Provisional 99.95
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 99.95
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.92
KOG2075 521 consensus Topoisomerase TOP1-interacting protein B 99.82
KOG4591280 consensus Uncharacterized conserved protein, conta 99.8
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.79
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.73
KOG4682 488 consensus Uncharacterized conserved protein, conta 99.73
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.68
KOG0511516 consensus Ankyrin repeat protein [General function 98.88
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.6
KOG2838401 consensus Uncharacterized conserved protein, conta 98.37
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 98.3
KOG2716230 consensus Polymerase delta-interacting protein PDI 98.06
KOG2838401 consensus Uncharacterized conserved protein, conta 97.96
KOG3473112 consensus RNA polymerase II transcription elongati 97.84
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 97.82
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.8
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 97.59
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.55
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 97.08
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 97.0
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 96.99
KOG2714 465 consensus SETA binding protein SB1 and related pro 96.6
KOG0511 516 consensus Ankyrin repeat protein [General function 96.32
KOG1778 319 consensus CREB binding protein/P300 and related TA 95.95
KOG1665 302 consensus AFH1-interacting protein FIP2, contains 95.86
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 95.5
KOG2715210 consensus Uncharacterized conserved protein, conta 95.05
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 90.99
KOG2075 521 consensus Topoisomerase TOP1-interacting protein B 85.56
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 81.59
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information 
Probab=99.96  E-value=2.6e-28  Score=235.18  Aligned_cols=145  Identities=19%  Similarity=0.347  Sum_probs=137.9

Q ss_pred             CccccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccCC-cCeEEeCCCCHHHHHHHHHHHhCCCCCCCH
Q 023436           98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESR-SGTIKISDVSYDALRAFVNYLYTAEACLDE  176 (282)
Q Consensus        98 ~~~sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~-~~~i~l~di~~~~~~~lL~ylYtg~~~~~~  176 (282)
                      ..+|||+|.|++       ++.|+|||.|||++|+||++||.++|+|.. ..+|.|.++++++|+.+|+|+|||.  ++.
T Consensus        23 ~~l~DV~L~v~~-------~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~   93 (557)
T PHA02713         23 DILCDVIITIGD-------GEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISS   93 (557)
T ss_pred             CCCCCEEEEeCC-------CCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCH
Confidence            579999999974       689999999999999999999999999864 7899999999999999999999997  689


Q ss_pred             HHHHHHHHHhhhcCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCChhHHhhh
Q 023436          177 QLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELV  251 (282)
Q Consensus       177 ~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~  251 (282)
                      +++.+||.+|++||++.|++.|.+||.+.++++||+.++.++..+.+..|.+.|.+||.+||.++.++++|.+|+
T Consensus        94 ~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~  168 (557)
T PHA02713         94 MNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTV  168 (557)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCC
Confidence            999999999999999999999999999999999999999999889888999999999999999999999999987

>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription] Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
3hqi_A312 Structures Of Spop-Substrate Complexes: Insights In 1e-13
4eoz_A145 Crystal Structure Of The Spop Btb Domain Complexed 3e-13
4ap2_A297 Crystal Structure Of The Human Klhl11-cul3 Complex 2e-10
3i3n_A279 Crystal Structure Of The Btb-Back Domains Of Human 2e-09
3htm_A172 Structures Of Spop-Substrate Complexes: Insights In 1e-07
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312 Back     alignment and structure 
Iteration: 1

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 64/107 (59%)
Query: 129 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEK 188
           +RSPVF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+K
Sbjct: 195 ARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADK 254
Query: 189 YQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLIT 235
           Y ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I 
Sbjct: 255 YALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFIN 301
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145 Back     alignment and structure
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 297 Back     alignment and structure
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11 Length = 279 Back     alignment and structure
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopbtb3-Box Length = 172 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 2e-41
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 2e-38
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 2e-36
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 3e-32
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 2e-31
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 9e-31
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 1e-22
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 1e-21
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 1e-21
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 7e-21
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 3e-20
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 4e-20
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 2e-19
2vpk_A116 Myoneurin; transcription regulation, transcription 4e-19
3b84_A119 Zinc finger and BTB domain-containing protein 48; 9e-19
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 1e-18
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 2e-17
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 8e-17
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 1e-16
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
 Score =  139 bits (353), Expect = 2e-41
 Identities = 49/144 (34%), Positives = 79/144 (54%), Gaps = 8/144 (5%)

Query: 100 YTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDA 159
           +TD  L  A +           AHKA+L +RSPVF AM ++EMEES+   ++I+DV  + 
Sbjct: 34  FTDCCLCVAGQE--------FQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEV 85

Query: 160 LRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAH 219
            +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A 
Sbjct: 86  FKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILAD 145

Query: 220 QHNAKQLLEAALSLITDNMDKLTK 243
            H+A QL   A+  I  +   + +
Sbjct: 146 LHSADQLKTQAVDFINYHATDVLE 169
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.97
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.97
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.96
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.95
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.94
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.91
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.9
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.9
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.89
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.89
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.89
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.88
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.88
2vpk_A116 Myoneurin; transcription regulation, transcription 99.88
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.86
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.86
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.85
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.85
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.83
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.82
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.57
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.4
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.26
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 99.18
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.81
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.77
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.76
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.48
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 98.45
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 98.37
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 97.46
3kvt_A115 Potassium channel protein SHAW; tetramerization do 96.26
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 95.87
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 95.52
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 95.25
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 95.21
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 86.41
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 84.13
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=99.97  E-value=3.1e-30  Score=224.68  Aligned_cols=146  Identities=21%  Similarity=0.359  Sum_probs=133.1

Q ss_pred             CccccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccc--cCCcCeEEeCCCCHHHHHHHHHHHhCCCCCCC
Q 023436           98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEME--ESRSGTIKISDVSYDALRAFVNYLYTAEACLD  175 (282)
Q Consensus        98 ~~~sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~--e~~~~~i~l~di~~~~~~~lL~ylYtg~~~~~  175 (282)
                      ..+|||+|+|+        |+.|+|||.||+++|+||++||.+++.  ++....|.++++++++|..+|+|+|||.+.++
T Consensus        29 ~~~~Dv~l~v~--------~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~  100 (256)
T 3hve_A           29 SRFCDAHLVLD--------GEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLN  100 (256)
T ss_dssp             -CCCCEEEEET--------TEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC
T ss_pred             CCCcceEEEEC--------CEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCccc
Confidence            57999999999        899999999999999999999999877  67778999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHhHHHhhCChhHHhhh
Q 023436          176 EQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELV  251 (282)
Q Consensus       176 ~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~L~  251 (282)
                      .+++.+++.+|++|+++.|+..|+++|.+.++++||+.++.+|..|++..|.+.|.+||.+||..+..+++|.+|+
T Consensus       101 ~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~  176 (256)
T 3hve_A          101 EDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELS  176 (256)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSC
T ss_pred             HhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999997
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 282
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 9e-16
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 1e-13
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 9e-16
 Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 8/103 (7%)

Query: 100 YTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDA 159
            TDVV+V + E           AHK VL++ S +F ++  ++++ + S      +++ + 
Sbjct: 25  LTDVVIVVSREQ--------FRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEG 76

Query: 160 LRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFL 202
               ++++YT+   L E     ++  A   Q++H+   C KF+
Sbjct: 77  FNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFI 119
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.89
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.88
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 98.28
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 98.2
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 97.37
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.92
d1t1da_100 Shaker potassium channel {California sea hare (Apl 96.66
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 96.33
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 95.83
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 92.95
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 91.21
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-23  Score=160.81  Aligned_cols=99  Identities=23%  Similarity=0.384  Sum_probs=94.3

Q ss_pred             CccccEEEEccCCCCCCCCCeeEehhHHHHhhcCHHHHHhhcCccccCCcCeEEeCCCCHHHHHHHHHHHhCCCCCCCHH
Q 023436           98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ  177 (282)
Q Consensus        98 ~~~sDv~l~v~~~~~~~~~~~~~~aHk~iLa~~S~yF~~mf~~~~~e~~~~~i~l~di~~~~~~~lL~ylYtg~~~~~~~  177 (282)
                      ..+|||+|+++        |+.|+|||.||+++|+||++||.+.+.++....+.++++++++|..+|+|+|||++.++.+
T Consensus        23 ~~~~Dv~l~v~--------~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~   94 (122)
T d1r29a_          23 DILTDVVIVVS--------REQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREG   94 (122)
T ss_dssp             TCSCCEEEEET--------TEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTT
T ss_pred             CCCeEEEEEEC--------CEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCeecCchh
Confidence            57999999999        8999999999999999999999999998887778888999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCcHhHHHHHHHHHHh
Q 023436          178 LACDLLELAEKYQVKHLKAYCEKFLVS  204 (282)
Q Consensus       178 ~~~~ll~~A~~~~l~~L~~~c~~~l~~  204 (282)
                      ++.+++.+|++|+++.|++.|.++|..
T Consensus        95 ~v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          95 NIMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            999999999999999999999999875
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure