BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023439
         (282 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WHR|A Chain A, Solution Structure Of The R3h Domain From Human
           Hypothetical Protein Baa76846
          Length = 124

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 11/93 (11%)

Query: 24  FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGL 80
           FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+
Sbjct: 18  FLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM 74

Query: 81  VTMVQENGIEGLGNRILVRKTAESKYPAVRLSE 113
                ++ ++  G  +++ KT+ ++ P  R SE
Sbjct: 75  -----DHNVDQTGKAVIINKTSNTRIPEQRFSE 102


>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
 pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
 pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
 pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
          Length = 372

 Score = 28.9 bits (63), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 128 IKIAIRRRPNAGCVNGANETGTKRSPVRSV----EERKEEYDRARARIFSGPSSPNSEDT 183
           IK+A     + GC +G N   T R  V+S+    +E+K E +R   +IF     PN  ++
Sbjct: 55  IKVA-----DLGCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNS 109

Query: 184 LTQV 187
           + ++
Sbjct: 110 VFKL 113


>pdb|2YNM|A Chain A, Structure Of The Adpxalf3-stabilized Transition State Of
           The Nitrogenase-like Dark-operative Protochlorophyllide
           Oxidoreductase Complex From Prochlorococcus Marinus With
           Its Substrate Protochlorophyllide A
 pdb|2YNM|B Chain B, Structure Of The Adpxalf3-stabilized Transition State Of
           The Nitrogenase-like Dark-operative Protochlorophyllide
           Oxidoreductase Complex From Prochlorococcus Marinus With
           Its Substrate Protochlorophyllide A
          Length = 301

 Score = 27.7 bits (60), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 76  QHYGLVTMVQENGIEGL--GNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKI 128
           QH     +V  N  + +   NRI+    A++K   VRL  + A +S E D++EK 
Sbjct: 171 QHANYCLIVTANDFDSIFAMNRIVAAINAKAKNYKVRLGGVIANRSAELDQIEKF 225


>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
          Length = 384

 Score = 27.3 bits (59), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 137 NAGCVNGANETGTKRSPVRSV----EERKEEYDRARARIF 172
           + GC +G N   T R  V+S+    +E+K E +R   +IF
Sbjct: 58  DLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIF 97


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,458,965
Number of Sequences: 62578
Number of extensions: 289292
Number of successful extensions: 715
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 6
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)