Query 023439
Match_columns 282
No_of_seqs 153 out of 196
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 06:49:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1whr_A Hypothetical KIAA1002 p 100.0 1.9E-34 6.4E-39 239.5 11.3 115 13-137 7-122 (124)
2 1msz_A DNA-binding protein smu 98.7 2.8E-08 9.7E-13 77.9 6.0 64 37-104 17-80 (86)
3 2cpm_A Sperm-associated antige 98.2 3.1E-06 1.1E-10 67.0 7.7 63 37-102 12-74 (94)
4 1ug8_A Poly(A)-specific ribonu 97.2 0.0012 4E-08 51.9 7.3 44 32-76 7-50 (87)
5 3gku_A Probable RNA-binding pr 88.2 0.78 2.7E-05 41.2 6.0 60 37-101 149-209 (225)
6 3d45_A Poly(A)-specific ribonu 70.9 0.86 2.9E-05 44.8 0.0 44 32-76 170-213 (507)
7 2a1r_A Poly(A)-specific ribonu 65.6 1.3 4.4E-05 42.7 0.0 43 33-76 176-218 (430)
8 3e11_A Predicted zincin-like m 29.0 20 0.00067 28.6 1.3 17 67-83 91-107 (114)
9 3f3b_A Phage-like element PBSX 23.5 3 0.0001 34.5 -4.5 19 65-84 2-20 (126)
10 2fhm_A Probable acylphosphatas 20.3 98 0.0034 23.1 3.7 32 66-99 16-47 (91)
11 1w2i_A Acylphosphatase; hydrol 20.2 1E+02 0.0034 23.1 3.8 32 66-99 18-49 (91)
No 1
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=100.00 E-value=1.9e-34 Score=239.54 Aligned_cols=115 Identities=29% Similarity=0.498 Sum_probs=101.5
Q ss_pred hhccCCCCchHHHHHHhc-CchhHHHHHHHHHHHHHHhcCCCccccccCCCCChHHHHHHHHhhhhhccceeeeccCccC
Q 023439 13 IVNERESMVDPFLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEG 91 (282)
Q Consensus 13 ~~~~~~~~vd~~L~eAL~-npkDRl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRlA~yygL~h~v~d~~~dg 91 (282)
..+..+.+||+||++||+ ||+||++||+||++|++||+++.++.++|||| |||+|||+|+||+||||+|.+ |+
T Consensus 7 ~~d~~~~~vd~~l~eaL~~~~rdR~~il~lE~~i~~Fi~d~~~~~~ef~pm-nSy~RllvHrvAe~ygL~h~~-----d~ 80 (124)
T 1whr_A 7 GTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQM-TSYHRMLLHRVAAYFGMDHNV-----DQ 80 (124)
T ss_dssp SSCCCCSCHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHCSSCCEEECCCC-CHHHHHHHHHHHHHHTCCEEE-----CS
T ss_pred cccCCCCccCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCCCccceECCCC-CHHHHHHHHHHHHHhCcCccc-----cC
Confidence 357789999999999996 99999999999999999999999899999999 999999999999999999976 44
Q ss_pred CcceEEEEecCCCCCCcccccccccCCcCcCchhhhhhhheeeCCC
Q 023439 92 LGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPN 137 (282)
Q Consensus 92 sg~~Ivv~KT~~triP~vrLsdl~~~~~~~~~~~~~~k~~ImrR~~ 137 (282)
.+.+|+|+||++|++|+++|+|+++... + .+.++..|+||++
T Consensus 81 ~~r~VvV~Kt~~tr~P~~~lse~~~~~~--~--~~~~~~~vl~r~~ 122 (124)
T 1whr_A 81 TGKAVIINKTSNTRIPEQRFSEHIKDEK--N--TEFQQRFILSGPS 122 (124)
T ss_dssp SCSSEEEECCTTCCCCSCCGGGTSCSCS--C--CCCCCSSCCCCCC
T ss_pred CCCEEEEEeCCCCCCChHHHHHHhcccc--c--ccchheeeEecCC
Confidence 5689999999999999999999996532 2 2244667889985
No 2
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=98.66 E-value=2.8e-08 Score=77.88 Aligned_cols=64 Identities=27% Similarity=0.288 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCCCccccccCCCCChHHHHHHHHhhhhhccceeeeccCccCCcceEEEEecCCC
Q 023439 37 TILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAES 104 (282)
Q Consensus 37 ~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRlA~yygL~h~v~d~~~dgsg~~Ivv~KT~~t 104 (282)
..+.++..|..|+.+ .+..++|||..++++|++||.||+-|||.|.... +|....|+|+|...+
T Consensus 17 ~~~~i~~~l~~F~~~-~~~~l~FP~sLs~~eR~~IH~lA~~~GL~h~S~G---~G~~R~l~V~k~~~~ 80 (86)
T 1msz_A 17 GVDHFRAMIVEFMAS-KKMQLEFPPSLNSHDRLRVHQIAEEHGLRHDSSG---EGKRRFITVSKRAGS 80 (86)
T ss_dssp CCHHHHHHHHHHHHH-TCSEEEECTTCCSHHHHHHHHHHHHTTEEEEEEC---SSSCCEEEEEECC--
T ss_pred hHHHHHHHHHHHhcC-CCcEEEcCCCCCHHHHHHHHHHHHHcCCCcceee---CCCCeEEEEEEeCCc
Confidence 456799999999954 5688999996699999999999999999999976 456678999997654
No 3
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=3.1e-06 Score=66.96 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCCCccccccCCCCChHHHHHHHHhhhhhccceeeeccCccCCcceEEEEecC
Q 023439 37 TILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTA 102 (282)
Q Consensus 37 ~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRlA~yygL~h~v~d~~~dgsg~~Ivv~KT~ 102 (282)
|--+.|+.|..|++...++.+.|+|| |+|.|-++|.+++.|||.+...+.++. ..+|||++..
T Consensus 12 yR~~re~~L~~la~~~g~~~v~L~PM-~~~eRriIH~~l~~~gl~S~S~Geep~--~R~VvI~~~~ 74 (94)
T 2cpm_A 12 FRKRMEKEVSDFIQDSGQIKKKFQPM-NKIERSILHDVVEVAGLTSFSFGEDDD--CRYVMIFKKE 74 (94)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEECCCC-CSSHHHHHHHHHHHHTCEEEEECSSSS--CCEEEEECST
T ss_pred HHHHHHHHHHHHHHhcCCCceEeCCC-CHHHHHHHHHHHHHCCCEEEEecCCCC--ceEEEEEeCC
Confidence 55688999999998887556999999 999999999999999999999775432 1479888654
No 4
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=97.16 E-value=0.0012 Score=51.87 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=40.3
Q ss_pred chhHHHHHHHHHHHHHHhcCCCccccccCCCCChHHHHHHHHhhh
Q 023439 32 PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQ 76 (282)
Q Consensus 32 pkDRl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRlA~ 76 (282)
|.++-||=.+-..|.+|++++....++++|+ |+|+|-|+++.+.
T Consensus 7 ~e~k~~id~i~~kIe~FL~s~~~~~l~l~pC-N~f~RkLIYQ~~~ 50 (87)
T 1ug8_A 7 GDQKKFIDQVIEKIEDFLQSEEKRSLELDPC-TGFQRKLIYQTLS 50 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCCEEECCCC-CSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCceecCCc-hHHHHHHHHHHHH
Confidence 5788899999999999999998788999999 9999999999854
No 5
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=88.21 E-value=0.78 Score=41.15 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCCCccccccCCCCChHHHHHHHHhhhhh-ccceeeeccCccCCcceEEEEec
Q 023439 37 TILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHY-GLVTMVQENGIEGLGNRILVRKT 101 (282)
Q Consensus 37 ~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRlA~yy-gL~h~v~d~~~dgsg~~Ivv~KT 101 (282)
.|-+|-+.+.+=+.... ..+.|.|| |+|.|-+||...+-+ |+.+.....+ ...+|||...
T Consensus 149 ~L~~lA~~~A~kV~~tg-~~v~L~PM-~~~ERriIH~al~~~~~V~T~SeGee---p~R~VVI~~~ 209 (225)
T 3gku_A 149 TLETLAKNIAYKVKRTK-RSVSLEPM-NPYERRIIHAALQNDKYVVTRSDGEE---PFRHVIISLK 209 (225)
T ss_dssp HHHHHHHHHHHHHHHHC-SCEECCCC-CHHHHHHHHHHTTTCSSEEEEEESST---TSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhC-CEEEccCC-CHHHHHHHHHHHccCCCcEEEEeecC---CCeEEEEEEc
Confidence 34444444444444443 34789999 999999999976654 8888876644 3357887653
No 6
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=70.87 E-value=0.86 Score=44.81 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHhcCCCccccccCCCCChHHHHHHHHhhh
Q 023439 32 PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQ 76 (282)
Q Consensus 32 pkDRl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRlA~ 76 (282)
+.|+.||-++-..|.+|++++....+.++++ |+|+|.|+|++-.
T Consensus 170 ~~~~~~~~~~~~~I~~wl~~~~~~~l~i~~~-n~~~r~Lv~q~l~ 213 (507)
T 3d45_A 170 EDQKKFIDQVIEKIEDFLQSEEKRSLELDPC-TGFQRKLIYQTLS 213 (507)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccccCCC-cHHHHHHHHHHHH
Confidence 5678889999999999999887667899999 9999999998753
No 7
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=65.57 E-value=1.3 Score=42.73 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCccccccCCCCChHHHHHHHHhhh
Q 023439 33 RHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQ 76 (282)
Q Consensus 33 kDRl~lLrlE~di~~FI~d~~~~~lel~pmpnSY~RLLvHRlA~ 76 (282)
.++.||-++-+.|.+|++++....+.++|+ |+|+|.|+|++-.
T Consensus 176 e~~~~~~~~~~~i~~~l~~~~~~~l~l~~~-~~~qr~Lv~q~l~ 218 (430)
T 2a1r_A 176 DQKKFIDQVVEKIEDLLQSEENKNLDLEPC-TGFQRKLIYQTLS 218 (430)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCC-cHHHHHHHHHHHH
Confidence 456677777788899998887677899998 9999999999754
No 8
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=29.04 E-value=20 Score=28.64 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=13.8
Q ss_pred HHHHHHHhhhhhcccee
Q 023439 67 LRLAAHRVSQHYGLVTM 83 (282)
Q Consensus 67 ~RLLvHRlA~yygL~h~ 83 (282)
+.-++|.+|.|||+...
T Consensus 91 ~~vvvhEiahh~G~~~e 107 (114)
T 3e11_A 91 RKTVVHEIAHHFGIDDE 107 (114)
T ss_dssp HHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHcCCCHH
Confidence 45689999999999643
No 9
>3f3b_A Phage-like element PBSX protein XKDH; NESG X-RAY SR362 P54328 structure, structural genomics, PSI- 2, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=23.53 E-value=3 Score=34.50 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=13.2
Q ss_pred hHHHHHHHHhhhhhccceee
Q 023439 65 SYLRLAAHRVSQHYGLVTMV 84 (282)
Q Consensus 65 SY~RLLvHRlA~yygL~h~v 84 (282)
||++||+||| +.|+|+...
T Consensus 2 Syq~lL~~RC-DIYHl~~~e 20 (126)
T 3f3b_A 2 SYRQMLIHRC-DIYHEAAQA 20 (126)
T ss_dssp --CCCCCEEE-EEECCEEEC
T ss_pred CHHHhhhccc-ceechhhcc
Confidence 8999999986 677885443
No 10
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=20.33 E-value=98 Score=23.08 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhhhccceeeeccCccCCcceEEEE
Q 023439 66 YLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVR 99 (282)
Q Consensus 66 Y~RLLvHRlA~yygL~h~v~d~~~dgsg~~Ivv~ 99 (282)
..|-.++++|.-+||.-+| .|..||+ ..|++.
T Consensus 16 GFR~~v~~~A~~lgl~G~V-~N~~dG~-Vei~~e 47 (91)
T 2fhm_A 16 GFRYFVQMEADKRKLAGWV-KNRDDGR-VEILAE 47 (91)
T ss_dssp CHHHHHHHHHHHTTCEEEE-EECTTSC-EEEEEE
T ss_pred CHHHHHHHHHHHcCCeEEE-EECCCCc-EEEEEE
Confidence 5788999999999999998 5544553 344443
No 11
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=20.22 E-value=1e+02 Score=23.13 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhhhccceeeeccCccCCcceEEEE
Q 023439 66 YLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVR 99 (282)
Q Consensus 66 Y~RLLvHRlA~yygL~h~v~d~~~dgsg~~Ivv~ 99 (282)
..|-.++++|.-+||.-+| .|..||+ ..|++.
T Consensus 18 GFR~~v~~~A~~lgL~G~V-~N~~dG~-Vei~~~ 49 (91)
T 1w2i_A 18 GFRWSMQREARKLGVNGWV-RNLPDGS-VEAVLE 49 (91)
T ss_dssp SHHHHHHHHHHHHTCEEEE-EECTTSC-EEEEEE
T ss_pred CHHHHHHHHHHHcCCeEEE-EECCCCC-EEEEEE
Confidence 5789999999999999998 5544553 344443
Done!