BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023440
(282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H1Q1|TL225_ARATH Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis
thaliana GN=At1g12250 PE=1 SV=1
Length = 280
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 204/285 (71%), Positives = 231/285 (81%), Gaps = 8/285 (2%)
Query: 1 MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQ--- 57
MA SS+SPL +KSL+ SSS + + L Q+SS+ S+ + D SN +
Sbjct: 1 MAFSSLSPLPMKSLDISRSSSSVSRSPYHFQRYLLRRLQLSSR--SNLEIKDSSNTREGC 58
Query: 58 CAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSAD 117
C+ A+ W+ +S A+AAAV+AS SS + A+A+LN++EA+TRGEFGIGSAAQ+GSAD
Sbjct: 59 CSS--AESNTWKRILSAAMAAAVIAS-SSGVPAMAELNRFEADTRGEFGIGSAAQYGSAD 115
Query: 118 LRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 177
L K VH ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRMV
Sbjct: 116 LSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMV 175
Query: 178 LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTR 237
LNEANLTNAVLVR+VLTRSDLGGA IEGADFSDAVIDL QKQALCKYA GTNP+TGV TR
Sbjct: 176 LNEANLTNAVLVRSVLTRSDLGGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTR 235
Query: 238 KSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 282
KSLGCGNSRRNAYGSPSSPLLSAPPQ+LL RDGFCD TGLCD K
Sbjct: 236 KSLGCGNSRRNAYGSPSSPLLSAPPQRLLGRDGFCDEKTGLCDVK 280
>sp|O22160|TL15A_ARATH Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis
thaliana GN=At2g44920 PE=1 SV=2
Length = 224
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 11/123 (8%)
Query: 126 ENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM---DRMVLN--E 180
+ R +F ++ +R+++F G+K GA + A+ TGADLS+ + D + N +
Sbjct: 106 QTLIRQDFKTSILRQANFKGAKLLGASF-----FDADLTGADLSEADLRGADFSLANVTK 160
Query: 181 ANLTNAVLV-RTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKS 239
NLTNA L TV + G+ I GADF+D + Q+ LCK A+G N TG +TR +
Sbjct: 161 VNLTNANLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDT 220
Query: 240 LGC 242
L C
Sbjct: 221 LLC 223
>sp|Q52118|YMO3_ERWST Uncharacterized protein in mobD 3'region OS=Erwinia stewartii PE=4
SV=1
Length = 295
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKA---VAY--KANF 163
S A +ADL++A N A+ T+A++ ++D +GA L A +AY +A+
Sbjct: 170 SNANLSNADLKRADLSNANLSGADLTNANLNQTDLPNVNLSGANLAHANLTMAYLSEADL 229
Query: 164 TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADF 208
+ A+LS+ + R L++ANL++A L L R+DL AI++GA+
Sbjct: 230 SNANLSNADLKRADLSDANLSDANLTNVDLKRADLSNAILKGANL 274
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYK-----ANF 163
S A A+L A N AN T A + E+D S + +GA L A + N
Sbjct: 90 SDADLSDANLSDANLSGANLAHANLTMAYLSEADLSNANLSGADLTNANLNQTDLPNVNL 149
Query: 164 TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 214
+GA+L+ + L+EA+L+NA L L R+DL A + GAD ++A ++
Sbjct: 150 SGANLAHANLTMAYLSEADLSNANLSNADLKRADLSNANLSGADLTNANLN 200
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRM---------- 176
N AN T A + E+D S + + A L++A AN +GADL++ +++
Sbjct: 153 NLAHANLTMAYLSEADLSNANLSNADLKRADLSNANLSGADLTNANLNQTDLPNVNLSGA 212
Query: 177 VLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
L ANLT A L L+ ++L A ++ AD SDA
Sbjct: 213 NLAHANLTMAYLSEADLSNANLSNADLKRADLSDA 247
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
A ADL A + AN D+ + SG+ A L A +A+ + A+LS+
Sbjct: 117 AYLSEADLSNANLSGADLTNANLNQTDLPNVNLSGANLAHANLTMAYLSEADLSNANLSN 176
Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 216
+ R L+ ANL+ A L L ++DL + GA+ + A + +A
Sbjct: 177 ADLKRADLSNANLSGADLTNANLNQTDLPNVNLSGANLAHANLTMA 222
>sp|Q55837|Y516_SYNY3 Uncharacterized protein slr0516 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0516 PE=4 SV=1
Length = 166
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEAN---- 182
+ R N +A + SD SG+ +G L +A+ +AN TGA+LS+T + L EAN
Sbjct: 49 DLREFNLENARLNRSDLSGANLSGVNLRRALLDRANLTGANLSETDLTEAALTEANLAGA 108
Query: 183 -LTNAVLVRTVLTRSDLGGAIIEGADFS 209
L+ A L R+ L DL GA ++GA+ +
Sbjct: 109 DLSGANLERSFLRDVDLTGANLKGANLA 136
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 132 NFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRT 191
N AD+RE FN LE A +++ +GA+LS + R +L+ ANLT A L T
Sbjct: 44 NLAGADLRE-------FN---LENARLNRSDLSGANLSGVNLRRALLDRANLTGANLSET 93
Query: 192 VLTRSDLGGAIIEGADFSDAVID 214
LT + L A + GAD S A ++
Sbjct: 94 DLTEAALTEANLAGADLSGANLE 116
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 16/121 (13%)
Query: 92 ADLNKYEAET-RGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNG 150
ADL ++ E R S A +LR+A+ RAN T A++ E+D +
Sbjct: 48 ADLREFNLENARLNRSDLSGANLSGVNLRRAL-----LDRANLTGANLSETDLT------ 96
Query: 151 AYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD 210
+A +AN GADLS ++R L + +LT A L L ++L A + D +
Sbjct: 97 ----EAALTEANLAGADLSGANLERSFLRDVDLTGANLKGANLAWANLTAANLTDVDLEE 152
Query: 211 A 211
A
Sbjct: 153 A 153
>sp|P81760|TL17_ARATH Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis
thaliana GN=At5g53490 PE=1 SV=2
Length = 236
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 125 KENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLT 184
+ N + ++A M + F G+ + KA A +A+F G + ++ ++DR+ ++NL
Sbjct: 123 QTNLKGKTLSAALMVGAKFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDRVNFGKSNLK 182
Query: 185 NAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 242
AV TVL+ S A +E F D +I Q +C+ N R LGC
Sbjct: 183 GAVFRNTVLSGSTFEEANLEDVVFEDTIIGYIDLQKICR-----NESINEEGRLVLGC 235
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
A+F AD+ + V K A E+ F G F A +++ K+N GA +
Sbjct: 139 AKFDGADMTEVVMSK----------AYAVEASFKGVNFTNAVIDRVNFGKSNLKGAVFRN 188
Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDL 198
T++ EANL + V T++ DL
Sbjct: 189 TVLSGSTFEEANLEDVVFEDTIIGYIDL 216
>sp|P73709|Y1819_SYNY3 Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1819 PE=4 SV=1
Length = 331
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
S A+ + + + A+ N R N T S+ S ++ N A L +A KAN A+L
Sbjct: 229 SEAEMTAVNCQGAIMTHVNLNRTNLTG-----SNLSFTRMNSADLSRANLTKANLQEAEL 283
Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 213
+ R L EAN NA LVR L +++ GA +GA D +
Sbjct: 284 IEAFFARANLTEANFINANLVRADLMSANMVGADFQGATMPDGQV 328
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 100 ETRGEFGIGSAAQFGSADLR----KAVHVKE------NFRRANFTSADMRESDFSGSKFN 149
E +G + AA G ADL+ K V + N + AN D+R++D S +
Sbjct: 140 EKKGYYTNLQAAILGRADLQGANMKGVDLSRADLSYANLKEANLRDVDLRKADLSYANLK 199
Query: 150 GAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLT-----NAVLVRTVLTRSDLGGA 201
GA L A A GADL + + R ++EA +T A++ L R++L G+
Sbjct: 200 GALLTDANLSGAKLNGADLQNANLMRAKISEAEMTAVNCQGAIMTHVNLNRTNLTGS 256
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
S A A+LR K + AN A + +++ SG+K NGA L+ A +A + A++
Sbjct: 174 SYANLKEANLRDVDLRKADLSYANLKGALLTDANLSGAKLNGADLQNANLMRAKISEAEM 233
Query: 169 S-----DTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 213
+ +M + LN NLT + L T + +DL A + A+ +A +
Sbjct: 234 TAVNCQGAIMTHVNLNRTNLTGSNLSFTRMNSADLSRANLTKANLQEAEL 283
Score = 37.7 bits (86), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 29/138 (21%)
Query: 98 EAETRGE---FGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLE 154
EA+ RG F + A G A+L V N A+ AD+ +D + F+GA L+
Sbjct: 39 EADLRGANLLFCYLNRANLGQANL-----VAANLSGASLNQADLAGADLRSANFHGAMLQ 93
Query: 155 KAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV---------------------RTVL 193
A+ ++ T A L DT + L A+L+ A L +L
Sbjct: 94 GAILRDSDMTLATLQDTNLIGADLRGADLSGATLTGACLRGANMRQEKKGYYTNLQAAIL 153
Query: 194 TRSDLGGAIIEGADFSDA 211
R+DL GA ++G D S A
Sbjct: 154 GRADLQGANMKGVDLSRA 171
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%)
Query: 113 FGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTL 172
ADLR A + RAN A++ ++ SG+ N A L A ANF GA L +
Sbjct: 37 LNEADLRGANLLFCYLNRANLGQANLVAANLSGASLNQADLAGADLRSANFHGAMLQGAI 96
Query: 173 MDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGA 206
+ + A L + L+ L +DL GA + GA
Sbjct: 97 LRDSDMTLATLQDTNLIGADLRGADLSGATLTGA 130
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 140 ESDFSGSKFNGAYLEKA-----VAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLT 194
E+ F+G K G LE A V +A+ GA+L ++R L +ANL A L L
Sbjct: 14 ETLFTGLKLPGINLEAADLIGIVLNEADLRGANLLFCYLNRANLGQANLVAANLSGASLN 73
Query: 195 RSDLGGAIIEGADFSDAVI 213
++DL GA + A+F A++
Sbjct: 74 QADLAGADLRSANFHGAML 92
>sp|P74297|SPKB_SYNY3 Serine/threonine-protein kinase B OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=spkB PE=1 SV=1
Length = 574
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 71 FVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRR 130
V LA A V + + L + N +AE + A FG A L+ + N
Sbjct: 456 LVGIVLAKAFVPGINCYQANLTNANFEQAEL-------TRADFGKARLKNVIFKGANLSD 508
Query: 131 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
A F AD+R +D G+ NG + A ANF+GADL
Sbjct: 509 AYFGYADLRGADLRGANLNGVNFKYANLQGANFSGADL 546
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 186
N +AN T+A+ +++ + + F A L+ + F GA+LSD L A+L A
Sbjct: 470 NCYQANLTNANFEQAELTRADFGKARLKNVI-----FKGANLSDAYFGYADLRGADLRGA 524
Query: 187 VLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217
L ++L GA GAD A + Q
Sbjct: 525 NLNGVNFKYANLQGANFSGADLGSAKVSPEQ 555
>sp|Q9SE95|FIP2_ARATH FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2
PE=1 SV=1
Length = 298
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%)
Query: 112 QFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 171
+F SA+LR A+ N + AN A + F G+ A+L+ A AN GA+L
Sbjct: 192 EFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHLQNADLTNANLEGANLEGA 251
Query: 172 LMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
+ L+ AN A L R L +L A +EGA+ A
Sbjct: 252 NLKGAKLSNANFKGANLQRAYLRHVNLREAHMEGANLGGA 291
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
A+F +AD ++ R FTSA++R + +G+ A L+ A +F GADL
Sbjct: 171 AKFRNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRT 230
Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
L A+LTNA L L ++L GA + A+F A
Sbjct: 231 A-----HLQNADLTNANLEGANLEGANLKGAKLSNANFKGA 266
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 128 FRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV 187
F R N A R +D GS F+ A L + AN GA L+ T L ANL +A
Sbjct: 163 FSRTNLQCAKFRNADAEGSIFHNAILRECEFTSANLRGALLAGT-----NLQSANLQDAC 217
Query: 188 LVRTVLTRSDLGGAIIEGADFSDAVID 214
LV +DL A ++ AD ++A ++
Sbjct: 218 LVGCSFCGADLRTAHLQNADLTNANLE 244
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 17/104 (16%)
Query: 99 AETRGEFGIGSAAQFGSADLRKAVHVKENF-----RRANFTSADMRESDFSGSKFNGAYL 153
A RG G+ Q SA+L+ A V +F R A+ +AD+ ++ G+ GA L
Sbjct: 196 ANLRGALLAGTNLQ--SANLQDACLVGCSFCGADLRTAHLQNADLTNANLEGANLEGANL 253
Query: 154 EKAVAYKANFTGADLSDTLMDRMVLNEA----------NLTNAV 187
+ A ANF GA+L + + L EA N+T A+
Sbjct: 254 KGAKLSNANFKGANLQRAYLRHVNLREAHMEGANLGGANMTGAI 297
>sp|Q8ZMM8|PIPB2_SALTY Secreted effector protein pipB2 OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=pipB2 PE=1 SV=1
Length = 350
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 114 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM 173
G +L+ AV AN TS ++ ++D SG+ GA L A ANF GA+LS T
Sbjct: 150 GGMNLKGAV-----LTGANLTSENLCDADLSGANLEGAVLFMADCEGANFKGANLSGT-- 202
Query: 174 DRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 213
L ++N NA L +++ + L A + GA+ A +
Sbjct: 203 ---SLGDSNFKNACLEDSIMCGATLDHANLTGANLQHASL 239
Score = 38.9 bits (89), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAY-----KANFTG 165
A A+L AV + ANF A++ + S F A LE ++ AN TG
Sbjct: 172 ADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTG 231
Query: 166 ADLSDTLMDRMVLNEANLTNAVLVRT-----VLTRSDLGGAIIEGADFSDAVID 214
A+L + + E N + A + T L R+D+ GA ++GA A+++
Sbjct: 232 ANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIME 285
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT---- 171
A L A N + A+ M E + SG+ + L A +A+ +GA L
Sbjct: 222 ATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIMA 281
Query: 172 -LMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI-DLAQKQA 220
+M+ VL ANL A + T L +DL A + F D + DL + A
Sbjct: 282 AIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTLTDLRTEDA 332
>sp|P74221|Y1152_SYNY3 Uncharacterized protein slr1152 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1152 PE=4 SV=1
Length = 331
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 123 HVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEAN 182
H + N+ A+ T A + ++D S + A L A A K NF GA LS L AN
Sbjct: 89 HCQMNW--ADLTYAKLNQADLSHADLTKASLYGAFAVKTNFKGAKLSGA-----TLAHAN 141
Query: 183 LTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALC 222
L A L +T LT ++L A + A+F A A Q C
Sbjct: 142 LRGANLEQTNLTGANLFAANLREANFQKADFSWANLQEAC 181
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMR-----ESDFSGSKFNGAYLEKAVAYKANFTG 165
A F A+L++A N R A + D+R E D S +G ++ A TG
Sbjct: 170 ADFSWANLQEACLSLANLRDARLWATDLRRAFMKEMDLSALSLHGLAMDGA-----KLTG 224
Query: 166 ADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 212
+ L DT + L ANL A L LT DL GA + GA+ + V
Sbjct: 225 SCLRDTNLSHSSLRGANLRGADLTGANLTGVDLTGADLMGANLTQVV 271
Score = 34.7 bits (78), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 16/130 (12%)
Query: 74 TALAAAVVASCSSNISAL--ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRA 131
T L A + C N + L A LN+ + S A A L A VK NF+ A
Sbjct: 80 TFLTKARLGHCQMNWADLTYAKLNQADL---------SHADLTKASLYGAFAVKTNFKGA 130
Query: 132 NFT-----SADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 186
+ A++R ++ + GA L A +ANF AD S + L+ ANL +A
Sbjct: 131 KLSGATLAHANLRGANLEQTNLTGANLFAANLREANFQKADFSWANLQEACLSLANLRDA 190
Query: 187 VLVRTVLTRS 196
L T L R+
Sbjct: 191 RLWATDLRRA 200
>sp|Q57KZ6|PIPB2_SALCH Secreted effector protein pipB2 OS=Salmonella choleraesuis (strain
SC-B67) GN=pipB2 PE=3 SV=1
Length = 350
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 114 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM 173
G +L+ AV AN T+ ++ ++D SG+ GA L A ANF GA+LS T
Sbjct: 150 GGMNLKGAV-----LTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGT-- 202
Query: 174 DRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
L ++N NA L +++ + L A + GA+ A
Sbjct: 203 ---SLGDSNFKNACLEDSIMCGATLDHANLTGANLQHA 237
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAY-----KANFTG 165
A A+L AV + ANF A++ + S F A LE ++ AN TG
Sbjct: 172 ADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTG 231
Query: 166 ADLSDT--LMDRMV--------LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 213
A+L L M+ ++ NL+ A L+R ++ + L GA I A DAV+
Sbjct: 232 ANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEDAVL 289
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD----- 170
A L A N + A+ M E + SG+ + L A +A+ +GA L
Sbjct: 222 ATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIMA 281
Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 213
+M+ VL ANL A + T L +DL A + F D +
Sbjct: 282 AIMEDAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTL 324
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 28/69 (40%)
Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 186
N A ADM + G+ A +E AV +AN A T +D L EANL N
Sbjct: 258 NLSGATLIRADMSGATLQGATIMAAIMEDAVLTRANLRKASFISTNLDGADLAEANLNNT 317
Query: 187 VLVRTVLTR 195
LT
Sbjct: 318 CFKDCTLTH 326
>sp|Q8Z4G9|PIPB2_SALTI Secreted effector protein pipB2 OS=Salmonella typhi GN=pipB2 PE=3
SV=1
Length = 350
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 53/136 (38%), Gaps = 35/136 (25%)
Query: 114 GSADLRKAVHVKENFRRANFTSADMRESDFSGS----------KFNGAYLEKAVAYKANF 163
G +L+ AV N N AD+ +D G+ F GA L A +N
Sbjct: 150 GGMNLKGAVLTGANLTAENLCDADLSGADLEGAILFMADCDGANFKGANLSGASLGDSNL 209
Query: 164 TGADLSDTLMDRMVLNEANLTNAVLVRT-------------------------VLTRSDL 198
T A L D++M L+ ANLT A L T L R+D+
Sbjct: 210 TNACLEDSIMCGATLDRANLTGANLQHTSLLGCSMVECNCSGANMDHANVSGSTLIRADM 269
Query: 199 GGAIIEGADFSDAVID 214
GA ++GA A+++
Sbjct: 270 SGATLKGATIMAAIME 285
Score = 37.7 bits (86), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 111 AQFGSADLRKAVHVKE-----NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTG 165
A ADL A+ NF+ AN + A + +S+ + + + + A +AN TG
Sbjct: 172 ADLSGADLEGAILFMADCDGANFKGANLSGASLGDSNLTNACLEDSIMCGATLDRANLTG 231
Query: 166 ADLSDT--LMDRMV--------LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDL 215
A+L T L MV ++ AN++ + L+R ++ + L GA I A AV+
Sbjct: 232 ANLQHTSLLGCSMVECNCSGANMDHANVSGSTLIRADMSGATLKGATIMAAIMEGAVLTR 291
Query: 216 AQKQ 219
A Q
Sbjct: 292 ANLQ 295
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 127 NFRRANFTSADMRESDFSGSKFNGA-----YLEKAVAYKANFTGADLSDTLMDRMVLNEA 181
N AN + + + +D SG+ GA +E AV +AN A + T +D L+EA
Sbjct: 253 NMDHANVSGSTLIRADMSGATLKGATIMAAIMEGAVLTRANLQKASFTATNLDGADLSEA 312
Query: 182 NLTNAVLVRTVLT 194
NL N LT
Sbjct: 313 NLRNTSFKDCTLT 325
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD----- 170
A L +A N + + M E + SG+ + A + + +A+ +GA L
Sbjct: 222 ATLDRANLTGANLQHTSLLGCSMVECNCSGANMDHANVSGSTLIRADMSGATLKGATIMA 281
Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI-DLAQKQA 220
+M+ VL ANL A T L +DL A + F D + DL + A
Sbjct: 282 AIMEGAVLTRANLQKASFTATNLDGADLSEANLRNTSFKDCTLTDLRTEDA 332
>sp|P73063|Y1851_SYNY3 Uncharacterized protein slr1851 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1851 PE=4 SV=1
Length = 162
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
AQ SA L+ A N AD+ +D SG+ GA L A A GADL
Sbjct: 53 AQLDSATLKNANLALANMTEVCLIYADLSNADLSGANLVGADLTNADLSGAKLGGADLRK 112
Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD-AVIDL 215
+ L A+L L+ LT +D A + GA SD AVI++
Sbjct: 113 ANLSEASLRGADLRGVNLIEANLTNTDFSEADLTGAYISDGAVINV 158
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%)
Query: 114 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM 173
G D V+ A+ A + D G+ A L+ A AN A++++ +
Sbjct: 16 GQRDFSHINLVRVCLSNASLIGAQLIFVDLGGANLTRAQLDSATLKNANLALANMTEVCL 75
Query: 174 DRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
L+ A+L+ A LV LT +DL GA + GAD A
Sbjct: 76 IYADLSNADLSGANLVGADLTNADLSGAKLGGADLRKA 113
>sp|Q5PEX4|PIPB2_SALPA Secreted effector protein pipB2 OS=Salmonella paratyphi A (strain
ATCC 9150 / SARB42) GN=pipB2 PE=3 SV=1
Length = 350
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 114 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM 173
G +L+ AV AN T+ ++ ++D SG+ GA L A ANF GA+LS T
Sbjct: 150 GGMNLKGAV-----LTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGT-- 202
Query: 174 DRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
L ++N NA L ++ + L A + GA+ A
Sbjct: 203 ---SLGDSNFKNACLEDGIMCGATLDHANLTGANLQHA 237
Score = 38.9 bits (89), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAY-----KANFTG 165
A A+L AV + ANF A++ + S F A LE + AN TG
Sbjct: 172 ADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDGIMCGATLDHANLTG 231
Query: 166 ADLSDT--LMDRMV--------LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 213
A+L L M+ ++ NL+ A L+R ++ + L GA I A DAV+
Sbjct: 232 ANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEDAVL 289
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 104 EFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANF 163
E GI A A+L A N + A+ M E + SG+ + L A +A+
Sbjct: 215 EDGIMCGATLDHANLTGA-----NLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADM 269
Query: 164 TGADLSD-----TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 213
+GA L +M+ VL ANL A + T L +DL A + F D +
Sbjct: 270 SGATLQGATIMAAIMEDAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTL 324
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 28/69 (40%)
Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 186
N A ADM + G+ A +E AV +AN A T +D L EANL N
Sbjct: 258 NLSGATLIRADMSGATLQGATIMAAIMEDAVLTRANLRKASFISTNLDGADLAEANLNNT 317
Query: 187 VLVRTVLTR 195
LT
Sbjct: 318 CFKDCTLTH 326
>sp|Q57756|Y308_METJA Uncharacterized protein MJ0308 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0308 PE=4 SV=1
Length = 233
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 159 YKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQK 218
Y + D +D + D +V L LV+ +L GG ADFS
Sbjct: 121 YATVYAPLDETDFIPDSIVFIGEPLYALRLVQAILYHK--GGRF--QADFSGI------- 169
Query: 219 QALCKYANGTNPITGVSTRK----SLGCGNSRRNAYGSPSSPLLSAPPQKLLD 267
Q+LC + + V TRK +LGC SR+ A P +++ PP+KL D
Sbjct: 170 QSLC-----ADAVAAVYTRKAPNMTLGCNGSRKYAGIKPEEVVVAFPPEKLKD 217
>sp|P05530|MCBG_ECOLX Protein McbG OS=Escherichia coli GN=mcbG PE=4 SV=1
Length = 187
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 10/137 (7%)
Query: 35 WVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADL 94
+ C + F DC +C +KN + L + C L +
Sbjct: 23 YYNCIFERIQLDNFNFRDCEFEKCRFVNCSIKNLK------LNFFKLIDCEFKDCLLQGV 76
Query: 95 NKYEAETRGEFGIGSA----AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNG 150
N + F + + F S L+K++ + FR F D+R+SDF+GS+FN
Sbjct: 77 NAADIMFPCTFSLVNCDLRFVDFISLRLQKSIFLSCRFRDCLFEETDLRKSDFTGSEFNN 136
Query: 151 AYLEKAVAYKANFTGAD 167
+ +F+ +
Sbjct: 137 TEFRHSDLSHCDFSMTE 153
>sp|P85304|TL18_SPIOL Thylakoid lumenal 18.3 kDa protein (Fragment) OS=Spinacia oleracea
PE=1 SV=1
Length = 18
Score = 34.3 bits (77), Expect = 0.91, Method: Composition-based stats.
Identities = 15/18 (83%), Positives = 16/18 (88%)
Query: 93 DLNKYEAETRGEFGIGSA 110
DLNK+EAE RGEFGI SA
Sbjct: 1 DLNKFEAEMRGEFGIXSA 18
>sp|Q8ZQ59|PIPB_SALTY Secreted effector protein PipB OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=pipB PE=2 SV=1
Length = 291
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%)
Query: 126 ENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTN 185
E+ + + ++AD RE+ S GA L A + N G++++ + L AN++
Sbjct: 169 EDLSKIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSG 228
Query: 186 AVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217
L +L SDL + GA + LA+
Sbjct: 229 VNLTAAILFGSDLTDTKLNGAKLDKIALTLAK 260
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEK-AVAYKANFTGAD 167
+ A ADL A N N T+A + SD + +K NGA L+K A+ TGAD
Sbjct: 212 TKANLTHADLTCA-----NMSGVNLTAAILFGSDLTDTKLNGAKLDKIALTLAKALTGAD 266
Query: 168 LS 169
L+
Sbjct: 267 LT 268
>sp|Q7L273|KCTD9_HUMAN BTB/POZ domain-containing protein KCTD9 OS=Homo sapiens GN=KCTD9
PE=2 SV=1
Length = 389
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 162 NFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQA- 220
NF+GADLS R+ L N A L R L ++L A +E AD S +V+D A Q
Sbjct: 224 NFSGADLS-----RLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGV 278
Query: 221 --LCKYANG 227
LC A G
Sbjct: 279 KMLCSNAEG 287
>sp|Q58EE9|GFAP_DANRE Glial fibrillary acidic protein OS=Danio rerio GN=gfap PE=1 SV=2
Length = 444
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 162 NFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAII 203
NFT DT MD + EA++ +++VRTV TR G II
Sbjct: 395 NFTNLQFRDTSMDTKLTPEAHVKRSIVVRTVETRD---GEII 433
>sp|O06733|YISX_BACSU Uncharacterized protein YisX OS=Bacillus subtilis (strain 168)
GN=yisX PE=4 SV=1
Length = 212
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 20/112 (17%)
Query: 118 LRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 177
R V + +FR T + D S + F+GA + + ++ G ++++ + +
Sbjct: 55 FRNVVFIDVSFRHIELTDVIFEKCDLSNADFSGAVIHRTSVKQSKMVGMNVAEATLRNVS 114
Query: 178 LNEAN-------LTNAVLVR-------------TVLTRSDLGGAIIEGADFS 209
E + +N VR TVL ++ G +EGA F+
Sbjct: 115 FEECHGHFSSFSYSNMKQVRFDHCALMQSECSDTVLQQTHFDGCELEGASFT 166
>sp|P37497|YYBG_BACSU Uncharacterized protein YybG OS=Bacillus subtilis (strain 168)
GN=yybG PE=4 SV=1
Length = 279
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 115 SADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGA-YLEKAVAYKAN 162
+ADLR A + R +F ADMR++D SG+ G+ +L +A AN
Sbjct: 218 AADLRNA-----DLRMTDFIGADMRDADLSGADLTGSIFLTQAQVNAAN 261
>sp|P32704|YJCF_ECOLI Uncharacterized protein YjcF OS=Escherichia coli (strain K12)
GN=yjcF PE=4 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 137 DMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANL 183
D+ S+F+G + A + YK NF A + L D +L+++N
Sbjct: 163 DLSNSNFAGCRLQNAIFQDCNMYKTNFNFAIMEKILFDNCILDDSNF 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,567,048
Number of Sequences: 539616
Number of extensions: 3954032
Number of successful extensions: 9863
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 9560
Number of HSP's gapped (non-prelim): 143
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)