Query 023440
Match_columns 282
No_of_seqs 351 out of 1493
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:02:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15197 secreted effector pro 99.7 1E-18 2.2E-23 162.1 3.0 110 108-217 156-266 (291)
2 PRK15197 secreted effector pro 99.7 3.1E-18 6.8E-23 158.8 3.9 83 111-193 154-236 (291)
3 PRK15196 secreted effector pro 99.6 4E-17 8.6E-22 155.5 2.9 13 108-120 169-181 (350)
4 PRK15196 secreted effector pro 99.6 4.5E-17 9.7E-22 155.2 2.3 21 111-131 192-212 (350)
5 PRK15377 E3 ubiquitin-protein 99.6 1.3E-16 2.8E-21 161.8 4.9 105 108-212 187-294 (782)
6 PRK15377 E3 ubiquitin-protein 99.6 3.6E-16 7.8E-21 158.6 4.8 108 108-215 192-308 (782)
7 KOG1665 AFH1-interacting prote 99.6 2.4E-16 5.2E-21 139.9 0.7 31 187-217 242-272 (302)
8 KOG1665 AFH1-interacting prote 99.6 5.9E-16 1.3E-20 137.4 1.2 9 111-119 136-144 (302)
9 PRK09718 hypothetical protein; 99.5 3.6E-15 7.7E-20 145.1 5.6 106 108-213 97-207 (512)
10 PRK09718 hypothetical protein; 99.5 6.2E-15 1.3E-19 143.4 3.8 8 165-172 179-186 (512)
11 PTZ00395 Sec24-related protein 26.1 2E+02 0.0043 33.1 7.0 50 163-212 434-483 (1560)
12 PF01696 Adeno_E1B_55K: Adenov 25.1 77 0.0017 31.1 3.5 8 138-145 149-156 (386)
No 1
>PRK15197 secreted effector protein PipB; Provisional
Probab=99.73 E-value=1e-18 Score=162.14 Aligned_cols=110 Identities=20% Similarity=0.251 Sum_probs=67.5
Q ss_pred CCCceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCce
Q 023440 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV 187 (282)
Q Consensus 108 ls~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~ 187 (282)
+.+++|.+++|++++|.+++|.+++|.+++|++|+|.+++|.+++|.+++|.+|+|.+++|.+++|.+++|.+++|.+|+
T Consensus 156 L~g~DLs~adL~gadLsgadLs~A~F~gAnL~~a~LsgA~L~~AnL~~A~f~~a~f~~Anf~~AdL~~A~Ls~A~L~gA~ 235 (291)
T PRK15197 156 LRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAI 235 (291)
T ss_pred CCCCCCCCCCCCCCcCCCCcccCccccccCcCCccccccccCCcEecccchhhhhhhhceeccCcCceeecCccCcCCCE
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ecCCeeccceecCcEEcCccccCc-eeCHHH
Q 023440 188 LVRTVLTRSDLGGAIIEGADFSDA-VIDLAQ 217 (282)
Q Consensus 188 l~~a~l~~a~l~~a~L~gAdf~~A-~l~~~~ 217 (282)
|.+++|++++|.+++|++++|.++ .|.+.+
T Consensus 236 L~gAdLs~A~L~gAnL~~A~L~~a~~L~gad 266 (291)
T PRK15197 236 LFGSDLTDTKLNGAKLDKIALTLAKALTGAD 266 (291)
T ss_pred eCCCCcCCCCCCCCCCCccccccCCCCCCCc
Confidence 666666655555555555555555 555443
No 2
>PRK15197 secreted effector protein PipB; Provisional
Probab=99.71 E-value=3.1e-18 Score=158.84 Aligned_cols=83 Identities=22% Similarity=0.297 Sum_probs=31.4
Q ss_pred ceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCceecC
Q 023440 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 190 (282)
Q Consensus 111 ~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~l~~ 190 (282)
.+|.+++|++++|.+++|.+++|.+++|++++|++++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|++++|.+
T Consensus 154 ldL~g~DLs~adL~gadLsgadLs~A~F~gAnL~~a~LsgA~L~~AnL~~A~f~~a~f~~Anf~~AdL~~A~Ls~A~L~g 233 (291)
T PRK15197 154 LNLRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTA 233 (291)
T ss_pred ccCCCCCCCCCCCCCCcCCCCcccCccccccCcCCccccccccCCcEecccchhhhhhhhceeccCcCceeecCccCcCC
Confidence 33444444443333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred Cee
Q 023440 191 TVL 193 (282)
Q Consensus 191 a~l 193 (282)
|+|
T Consensus 234 A~L 236 (291)
T PRK15197 234 AIL 236 (291)
T ss_pred CEe
Confidence 333
No 3
>PRK15196 secreted effector protein PipB2; Provisional
Probab=99.65 E-value=4e-17 Score=155.51 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=4.9
Q ss_pred CCCceEccccccc
Q 023440 108 GSAAQFGSADLRK 120 (282)
Q Consensus 108 ls~~~f~~~dL~~ 120 (282)
+.+++|++++|++
T Consensus 169 L~gadLs~a~L~~ 181 (350)
T PRK15196 169 LCDADLSGANLEG 181 (350)
T ss_pred CCCCCcCcCcccc
Confidence 3333333333333
No 4
>PRK15196 secreted effector protein PipB2; Provisional
Probab=99.64 E-value=4.5e-17 Score=155.16 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=7.9
Q ss_pred ceEccccccccccCCceeeCc
Q 023440 111 AQFGSADLRKAVHVKENFRRA 131 (282)
Q Consensus 111 ~~f~~~dL~~~~f~~adl~~a 131 (282)
++|++++|.+++|.+++|+++
T Consensus 192 a~L~~AnLs~a~f~~a~L~~A 212 (350)
T PRK15196 192 ANFKGANLSGTSLGDSNFKNA 212 (350)
T ss_pred CeecCcchhhhhhccCccccc
Confidence 333333333333333333333
No 5
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=99.63 E-value=1.3e-16 Score=161.83 Aligned_cols=105 Identities=14% Similarity=0.242 Sum_probs=62.9
Q ss_pred CCCceEccccccccccCCceeeCcEEccceecCce-ecCccccCceeccceeccceeccccccCcccceeeeccccccCc
Q 023440 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESD-FSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 186 (282)
Q Consensus 108 ls~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~-f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A 186 (282)
+++++|.++||++++|.+++|.+++|.+++|++++ |.+|+|.+++|.+|+|.+++|.+|+|++++|.+++|.+++|.+|
T Consensus 187 Le~vdFsg~DLSGADFsg~DLSgAnFsgA~Lr~AdiL~gAdLsgAnLs~AdLs~AnFsgcnLs~AnLs~A~L~~AdFsgA 266 (782)
T PRK15377 187 GEELTYADRDFSNADFRNINFSKINPSGFMLRDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNS 266 (782)
T ss_pred CccCCcCCCcCCCCCCCCCcccCCcchhhcccCCCCcCCCccCCeEcccchhhhhhhheeeecccccCcCEeCCCEecCC
Confidence 45666777777777777777666666666666666 66666666666666666666666666555555555555555555
Q ss_pred eecCCeeccc--eecCcEEcCccccCce
Q 023440 187 VLVRTVLTRS--DLGGAIIEGADFSDAV 212 (282)
Q Consensus 187 ~l~~a~l~~a--~l~~a~L~gAdf~~A~ 212 (282)
+|.+++|.++ ++.++++.+++|+||+
T Consensus 267 dLkgADLSgS~lt~~~inLs~A~LkGA~ 294 (782)
T PRK15377 267 DMNEASLKYSITTQQQPSFIETTLKNTI 294 (782)
T ss_pred CCCCCCCCCCcccccccccchhhcCCcE
Confidence 5555555555 2233444444444443
No 6
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=99.61 E-value=3.6e-16 Score=158.60 Aligned_cols=108 Identities=22% Similarity=0.296 Sum_probs=70.9
Q ss_pred CCCceEccccccccccCCceeeCcEEccce-ecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCc
Q 023440 108 GSAAQFGSADLRKAVHVKENFRRANFTSAD-MRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 186 (282)
Q Consensus 108 ls~~~f~~~dL~~~~f~~adl~~a~f~~a~-l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A 186 (282)
.++++|.+++|++++|.+++|.+++|.+++ |++|+|.+|+|.+++|.+++|.+|+|++++|+++.|.+++|.+|+|+++
T Consensus 192 Fsg~DLSGADFsg~DLSgAnFsgA~Lr~AdiL~gAdLsgAnLs~AdLs~AnFsgcnLs~AnLs~A~L~~AdFsgAdLkgA 271 (782)
T PRK15377 192 YADRDFSNADFRNINFSKINPSGFMLRDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEA 271 (782)
T ss_pred cCCCcCCCCCCCCCcccCCcchhhcccCCCCcCCCccCCeEcccchhhhhhhheeeecccccCcCEeCCCEecCCCCCCC
Confidence 566777777777777777777777777777 7777777777777777777777777777777777777777776666666
Q ss_pred eecCC-------eeccceecCcE-EcCccccCceeCH
Q 023440 187 VLVRT-------VLTRSDLGGAI-IEGADFSDAVIDL 215 (282)
Q Consensus 187 ~l~~a-------~l~~a~l~~a~-L~gAdf~~A~l~~ 215 (282)
+|.++ ++.+++|+||+ +.+|+|.|+++++
T Consensus 272 DLSgS~lt~~~inLs~A~LkGA~I~~gAnLlGAiL~d 308 (782)
T PRK15377 272 SLKYSITTQQQPSFIETTLKNTIIIHKANLSGVILNE 308 (782)
T ss_pred CCCCCcccccccccchhhcCCcEeccCCccccceeec
Confidence 66666 23334444444 2444555555443
No 7
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=99.58 E-value=2.4e-16 Score=139.88 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=11.8
Q ss_pred eecCCeeccceecCcEEcCccccCceeCHHH
Q 023440 187 VLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217 (282)
Q Consensus 187 ~l~~a~l~~a~l~~a~L~gAdf~~A~l~~~~ 217 (282)
+|+++.+.+++|++|+|.|+|+++++|.+.+
T Consensus 242 ~Lknanle~~NLrgA~LaGadLencnlsG~d 272 (302)
T KOG1665|consen 242 TLKNANLENCNLRGANLAGADLENCNLSGAD 272 (302)
T ss_pred cccccccccCccccccccCCccccCCCCCcc
Confidence 3333333333333333333333333443333
No 8
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=99.56 E-value=5.9e-16 Score=137.42 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=3.3
Q ss_pred ceEcccccc
Q 023440 111 AQFGSADLR 119 (282)
Q Consensus 111 ~~f~~~dL~ 119 (282)
++|+|+||+
T Consensus 136 vNlSGaDLs 144 (302)
T KOG1665|consen 136 VNLSGADLS 144 (302)
T ss_pred ccccccchh
Confidence 333333333
No 9
>PRK09718 hypothetical protein; Validated
Probab=99.55 E-value=3.6e-15 Score=145.06 Aligned_cols=106 Identities=15% Similarity=0.301 Sum_probs=49.3
Q ss_pred CCCceEccccccccccCCceeeCcEEccceecCceecCccccC-----ceeccceeccceeccccccCcccceeeecccc
Q 023440 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNG-----AYLEKAVAYKANFTGADLSDTLMDRMVLNEAN 182 (282)
Q Consensus 108 ls~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~-----a~f~~a~l~~a~l~gAdls~a~l~~a~f~~ad 182 (282)
+.+|+|++|+|++++|.+++|.++.|.++.|.+|+|.+|+|.+ +.|.++.|.+|++.|++|+++.+.++.|.+|+
T Consensus 97 FegCdFsgCdFS~csFs~~dLqDV~FEcA~Lg~CNFsgAdLsgA~FarA~L~rvsFinCKLsGAdFSgA~Lk~V~FsdCn 176 (512)
T PRK09718 97 LTSCHFKGDVISKVSFLSSNLQHVTFECKEIGDCNFTTAIVDNVIFKCRRLHNVIFIKASGEYVDFSKNILDTVDFSQSQ 176 (512)
T ss_pred EcccEecCCEEeeceecCCEEEeEEEeccccCccccccCCCCCCccccceecceEEEeccccCcccccCccCCcEEeeeE
Confidence 3455555555555555555555555555555555554544444 33334444444444444444444444444444
Q ss_pred ccCceecCCeeccceecCcEEcCccccCcee
Q 023440 183 LTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 213 (282)
Q Consensus 183 L~~A~l~~a~l~~a~l~~a~L~gAdf~~A~l 213 (282)
|.+++|.+++|++++|.+++|.+++|.+++|
T Consensus 177 L~yAnFsgAnLskA~F~gCDLseAdFSEcdL 207 (512)
T PRK09718 177 LTHSNFRECQIRNSNFDNCYLYASHFTRAEF 207 (512)
T ss_pred ecccCCCCCcCCCCEEeCccCCcCCccCCcc
Confidence 4444444444444444444444333333333
No 10
>PRK09718 hypothetical protein; Validated
Probab=99.51 E-value=6.2e-15 Score=143.40 Aligned_cols=8 Identities=0% Similarity=0.181 Sum_probs=2.8
Q ss_pred cccccCcc
Q 023440 165 GADLSDTL 172 (282)
Q Consensus 165 gAdls~a~ 172 (282)
+++|.+++
T Consensus 179 yAnFsgAn 186 (512)
T PRK09718 179 HSNFRECQ 186 (512)
T ss_pred ccCCCCCc
Confidence 33333333
No 11
>PTZ00395 Sec24-related protein; Provisional
Probab=26.06 E-value=2e+02 Score=33.06 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=20.4
Q ss_pred eccccccCcccceeeeccccccCceecCCeeccceecCcEEcCccccCce
Q 023440 163 FTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 212 (282)
Q Consensus 163 l~gAdls~a~l~~a~f~~adL~~A~l~~a~l~~a~l~~a~L~gAdf~~A~ 212 (282)
+.++-++++-+.+.-+.++-+.++-+.++-+.++.+.++.+..|-=..+.
T Consensus 434 ~~n~~~~n~p~~n~p~~n~p~~n~p~~n~p~~n~~~~n~~~~~~~~~~~~ 483 (1560)
T PTZ00395 434 YNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAPPSSAKDHHSA 483 (1560)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCcccCCCcccc
Confidence 33333333333333333334444444444444444444444444444443
No 12
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=25.08 E-value=77 Score=31.13 Aligned_cols=8 Identities=25% Similarity=0.534 Sum_probs=3.3
Q ss_pred ecCceecC
Q 023440 138 MRESDFSG 145 (282)
Q Consensus 138 l~~a~f~~ 145 (282)
|.||+|.|
T Consensus 149 ~hgC~F~g 156 (386)
T PF01696_consen 149 FHGCSFFG 156 (386)
T ss_pred EEeeEEec
Confidence 33444433
Done!