Query 023440
Match_columns 282
No_of_seqs 351 out of 1493
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:50:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f3l_A RFR-domain; beta helix, 100.0 4.5E-30 1.5E-34 222.5 10.2 136 108-243 49-184 (184)
2 3n90_A P15, thylakoid lumenal 99.9 5.6E-27 1.9E-31 196.5 7.5 138 108-245 8-146 (152)
3 2o6w_A Repeat five residue (RF 99.8 1.4E-21 4.8E-26 163.6 5.0 106 109-214 16-134 (150)
4 2o6w_A Repeat five residue (RF 99.8 1.1E-21 3.6E-26 164.3 3.6 94 122-215 47-140 (150)
5 2bm5_A MFPA, RV3361C, pentapep 99.8 5.2E-20 1.8E-24 158.1 7.1 55 165-219 104-158 (186)
6 3n90_A P15, thylakoid lumenal 99.8 9.6E-21 3.3E-25 158.4 1.8 108 110-217 5-113 (152)
7 2w7z_A EFSQNR, pentapeptide re 99.8 7.5E-20 2.6E-24 160.2 6.2 30 192-221 176-205 (214)
8 2xty_A QNRB1; cell cycle, pent 99.8 1.6E-19 5.4E-24 158.3 7.7 69 155-223 141-209 (217)
9 2w7z_A EFSQNR, pentapeptide re 99.8 1.6E-19 5.5E-24 158.1 6.2 24 168-191 127-150 (214)
10 2f3l_A RFR-domain; beta helix, 99.8 2.1E-19 7.2E-24 155.3 5.6 110 111-220 47-156 (184)
11 3pss_A QNR; pentapeptide repea 99.8 3.1E-19 1.1E-23 155.4 5.3 44 180-223 165-208 (216)
12 2xt2_A ALBG, MCBG-like protein 99.8 6.8E-19 2.3E-23 151.5 7.4 105 109-213 27-137 (200)
13 2xt2_A ALBG, MCBG-like protein 99.7 3.5E-19 1.2E-23 153.3 3.6 13 158-170 102-114 (200)
14 3nb2_A Secreted effector prote 99.7 3E-18 1E-22 171.6 5.6 105 108-213 34-140 (613)
15 3nb2_A Secreted effector prote 99.7 3.6E-18 1.2E-22 171.0 6.1 110 108-217 39-155 (613)
16 2qyu_A Secreted effector prote 99.7 4.5E-17 1.5E-21 161.8 5.6 107 110-216 39-154 (627)
17 2qyu_A Secreted effector prote 99.6 4E-16 1.4E-20 155.1 6.0 105 108-212 42-155 (627)
No 1
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.96 E-value=4.5e-30 Score=222.47 Aligned_cols=136 Identities=39% Similarity=0.591 Sum_probs=130.7
Q ss_pred CCCceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCce
Q 023440 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV 187 (282)
Q Consensus 108 ls~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~ 187 (282)
+.+++|++++|++++|.+++|++++|.+++|++++|++++|++++|.+++|.+++|++++|++++|.+++|.+|+|++|+
T Consensus 49 ~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~a~ 128 (184)
T 2f3l_A 49 GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAV 128 (184)
T ss_dssp ---CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCB
T ss_pred ccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCCCE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCeeccceecCcEEcCccccCceeCHHHHHHHhhhhcCCCCCCCcchhhhcCCC
Q 023440 188 LVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCG 243 (282)
Q Consensus 188 l~~a~l~~a~l~~a~L~gAdf~~A~l~~~~~~~lc~~a~g~n~~tg~~tr~sLgc~ 243 (282)
|.+++|.+++|.+++|++++|++|+|++.+++.+|.+++|+||+||++||+||||+
T Consensus 129 l~~a~l~~a~f~~a~L~gadf~~a~l~~~~l~~~c~~~~g~n~~t~~~tr~sl~c~ 184 (184)
T 2f3l_A 129 LTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLRCQ 184 (184)
T ss_dssp CTTCEEEEEECTTCBCTTCBCTTCEECHHHHHHHHTTCCCBCTTTCCBHHHHTTC-
T ss_pred eeCCEECCCEEeCCEecCCEecCCCCCcChHHHhhccccCCCcccccchhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999996
No 2
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.93 E-value=5.6e-27 Score=196.47 Aligned_cols=138 Identities=30% Similarity=0.404 Sum_probs=121.0
Q ss_pred CCCceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCce
Q 023440 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV 187 (282)
Q Consensus 108 ls~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~ 187 (282)
+.+++|++++|++++|++++|.+++|.+++|++++|.+++|.+++|.+++|.+++|++++|++++|.+++|.+++|++++
T Consensus 8 ~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~ 87 (152)
T 3n90_A 8 YGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNAN 87 (152)
T ss_dssp CCHHHHTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCB
T ss_pred ccCceEcCCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCC
Confidence 45667777888888888888888888888888888888888888888888888888888888888888888888888999
Q ss_pred ecCCeecc-ceecCcEEcCccccCceeCHHHHHHHhhhhcCCCCCCCcchhhhcCCCCC
Q 023440 188 LVRTVLTR-SDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNS 245 (282)
Q Consensus 188 l~~a~l~~-a~l~~a~L~gAdf~~A~l~~~~~~~lc~~a~g~n~~tg~~tr~sLgc~~~ 245 (282)
|.+++|.+ ++|.+++|++|+|++++|.+.+++.+|.+++|+||.+|..||++|.|...
T Consensus 88 l~~a~~~g~~~~~~a~l~~a~~~~a~l~~~~l~~lc~~~~g~n~~~~~~tr~~~~~~~~ 146 (152)
T 3n90_A 88 LEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCNLE 146 (152)
T ss_dssp CTTCBCCSSCBCTTCBCTTCBCTTCCCCHHHHHHHHHHCCCBCTTTCCBHHHHTTTTC-
T ss_pred CCCCEEcCCceECCCEecCCEecCCccCcHHHHHHhhhhhCcCCccccchhhhhhhhhh
Confidence 99999984 99999999999999999999999999999999999999999999987643
No 3
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}
Probab=99.83 E-value=1.4e-21 Score=163.58 Aligned_cols=106 Identities=19% Similarity=0.257 Sum_probs=47.9
Q ss_pred CCceEccccccccccCCc-------------eeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccce
Q 023440 109 SAAQFGSADLRKAVHVKE-------------NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 175 (282)
Q Consensus 109 s~~~f~~~dL~~~~f~~a-------------dl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~ 175 (282)
.+++|++++|++++|.++ +|.+++|.+++|.+++|++++|.+++|.+++|.+|+|.+++|++++|.+
T Consensus 16 ~~~~l~~~dL~~~~l~~~~~~~~~~~~l~~~~f~~a~l~~~~l~~a~l~~a~l~~a~l~~a~~~~a~l~~a~l~~a~l~~ 95 (150)
T 2o6w_A 16 VGCNLEGVNLPRENFGLKYRIPRSSSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLEN 95 (150)
T ss_dssp TTCBCTTCBCTTCBCSSSCBCC---CTTCCBSTTCTTCCCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred CCcccCCCCCCCCCcccCcccccccCccccCccCCCCcCCCEeCCCCCCCCCccCCCCCCCCcCCCCCCCCEecCCCCCC
Confidence 344455544444444444 4444444444444444444444444444444444444444444444444
Q ss_pred eeeccccccCceecCCeeccceecCcEEcCccccCceeC
Q 023440 176 MVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 214 (282)
Q Consensus 176 a~f~~adL~~A~l~~a~l~~a~l~~a~L~gAdf~~A~l~ 214 (282)
++|.+|+|++++|.+++|++++|.+++|++++|++++|.
T Consensus 96 a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a~l~~a~l~ 134 (150)
T 2o6w_A 96 AILIGANLQGANLENANLQGANLENANLRGAILTGVNLE 134 (150)
T ss_dssp CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred CEecCCCCCCCCCCCceecccEECCCCcCcCCccCCCCC
Confidence 444444444444444444444444444444444444443
No 4
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}
Probab=99.83 E-value=1.1e-21 Score=164.30 Aligned_cols=94 Identities=23% Similarity=0.368 Sum_probs=58.6
Q ss_pred ccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCceecCCeeccceecCc
Q 023440 122 VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGA 201 (282)
Q Consensus 122 ~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~l~~a~l~~a~l~~a 201 (282)
+|.+++|.+++|.+++|++++|.+++|++++|.+++|.+++|.+++|++++|.+++|.+++|++|+|.+++|.+++|.++
T Consensus 47 ~f~~a~l~~~~l~~a~l~~a~l~~a~l~~a~~~~a~l~~a~l~~a~l~~a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a 126 (150)
T 2o6w_A 47 PFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENANLRGA 126 (150)
T ss_dssp STTCTTCCCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTC
T ss_pred ccCCCCcCCCEeCCCCCCCCCccCCCCCCCCcCCCCCCCCEecCCCCCCCEecCCCCCCCCCCCceecccEECCCCcCcC
Confidence 66777666666666666666666666666666666666666666666666666666666555555555555555555555
Q ss_pred EEcCccccCceeCH
Q 023440 202 IIEGADFSDAVIDL 215 (282)
Q Consensus 202 ~L~gAdf~~A~l~~ 215 (282)
+|.+++|++++|.+
T Consensus 127 ~l~~a~l~~a~l~g 140 (150)
T 2o6w_A 127 ILTGVNLEETHLKG 140 (150)
T ss_dssp BCTTCBCTTCBCTT
T ss_pred CccCCCCCCCCcCC
Confidence 55555555555544
No 5
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=99.80 E-value=5.2e-20 Score=158.09 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=27.2
Q ss_pred cccccCcccceeeeccccccCceecCCeeccceecCcEEcCccccCceeCHHHHH
Q 023440 165 GADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQ 219 (282)
Q Consensus 165 gAdls~a~l~~a~f~~adL~~A~l~~a~l~~a~l~~a~L~gAdf~~A~l~~~~~~ 219 (282)
+++|++++|.+++|.+|+|++++|.+++|++++|.+++|++++|++|++.+.++.
T Consensus 104 ~a~f~~a~l~~a~f~~a~L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l~~~~~~ 158 (186)
T 2bm5_A 104 GLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWR 158 (186)
T ss_dssp TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHHHH
T ss_pred CCeeccCEEecCccCCCccCCCCcCCCccCCCEecCCccCCcccCCCEeeccccc
Confidence 3333334444444444444444444455555555555555555556665555543
No 6
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.79 E-value=9.6e-21 Score=158.44 Aligned_cols=108 Identities=23% Similarity=0.321 Sum_probs=55.6
Q ss_pred CceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCceec
Q 023440 110 AAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 189 (282)
Q Consensus 110 ~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~l~ 189 (282)
+++|.+++|++++|.+++|++++|.+++|.+++|.+++|.+++|.+++|.+|+|.+++|++|+|.+++|.+|+|++++|.
T Consensus 5 g~~~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~ 84 (152)
T 3n90_A 5 GGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLT 84 (152)
T ss_dssp GCCCCHHHHTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred CCcccCceEcCCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcC
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCeeccceecC-cEEcCccccCceeCHHH
Q 023440 190 RTVLTRSDLGG-AIIEGADFSDAVIDLAQ 217 (282)
Q Consensus 190 ~a~l~~a~l~~-a~L~gAdf~~A~l~~~~ 217 (282)
+++|.+++|.+ ++|++++|++|+|.+..
T Consensus 85 ~a~l~~a~~~g~~~~~~a~l~~a~~~~a~ 113 (152)
T 3n90_A 85 NANLEGATMMGNTSFKGSNITGADFTDVP 113 (152)
T ss_dssp TCBCTTCBCCSSCBCTTCBCTTCBCTTCC
T ss_pred CCCCCCCEEcCCceECCCEecCCEecCCc
Confidence 55555555552 55555555555554443
No 7
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=99.79 E-value=7.5e-20 Score=160.21 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=15.0
Q ss_pred eeccceecCcEEcCccccCceeCHHHHHHH
Q 023440 192 VLTRSDLGGAIIEGADFSDAVIDLAQKQAL 221 (282)
Q Consensus 192 ~l~~a~l~~a~L~gAdf~~A~l~~~~~~~l 221 (282)
+|++++|.+++|.+++|++|+|+..|...+
T Consensus 176 ~l~~a~l~~~~~~~a~l~ga~~~~~q~~~l 205 (214)
T 2w7z_A 176 DFSQNTFERLTFSPNYLSGLXVTPEQAIYL 205 (214)
T ss_dssp BCTTSBCSCCBCCGGGCTTCEECHHHHHHH
T ss_pred CcccCCcCceEcCHHHcCCcccCHHHHHHH
Confidence 333334444444444555666666665554
No 8
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A
Probab=99.78 E-value=1.6e-19 Score=158.29 Aligned_cols=69 Identities=23% Similarity=0.224 Sum_probs=35.1
Q ss_pred cceeccceeccccccCcccceeeeccccccCceecCCeeccceecCcEEcCccccCceeCHHHHHHHhh
Q 023440 155 KAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCK 223 (282)
Q Consensus 155 ~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~l~~a~l~~a~l~~a~L~gAdf~~A~l~~~~~~~lc~ 223 (282)
+++|.+++|.+++|++++|.+++|.+++|++++|++++|++++|.++++++++|++++++..|...+.+
T Consensus 141 ~~~~~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~adl~~a~l~~~~l~~a~l~ga~~~~~q~~~l~~ 209 (217)
T 2xty_A 141 ENRWIGAQVLGATFSGSDLSGGEFSTFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLME 209 (217)
T ss_dssp SCBCTTCBCTTCBCTTCBCTTCBCTTCCTTSSBCTTCBCTTCBCTTCCTTTSCCTTCEECHHHHHHHHH
T ss_pred CCCcCCCeeCcCEECCCccCCCCCCCCCcCCCcCCCCcCCCCCcCCCcCCCCccCcCEechHHHHHHHH
Confidence 333333333334444444444444444444444444555555555555555666666777777666543
No 9
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=99.77 E-value=1.6e-19 Score=158.13 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=8.5
Q ss_pred ccCcccceeeeccccccCceecCC
Q 023440 168 LSDTLMDRMVLNEANLTNAVLVRT 191 (282)
Q Consensus 168 ls~a~l~~a~f~~adL~~A~l~~a 191 (282)
|++++|.+++|.+|+|++++|.++
T Consensus 127 f~~a~l~~~~f~~~~l~~a~f~~a 150 (214)
T 2w7z_A 127 FRFANFNLVHFNQTRLVESEFFEV 150 (214)
T ss_dssp CTTCEEEEEEEESCBCTTCBCTTC
T ss_pred CCcCccCceEEEecccCCCCccCC
Confidence 333333333333333333333333
No 10
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.77 E-value=2.1e-19 Score=155.34 Aligned_cols=110 Identities=24% Similarity=0.253 Sum_probs=79.9
Q ss_pred ceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCceecC
Q 023440 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 190 (282)
Q Consensus 111 ~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~l~~ 190 (282)
..+.+++|++++|.+++|++++|.+++|.+|+|.+++|++++|.+++|.+|+|.+++|++++|.+++|.+++|++|+|.+
T Consensus 47 ~~~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~ 126 (184)
T 2f3l_A 47 VTGSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTN 126 (184)
T ss_dssp -----CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTT
T ss_pred ccccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCC
Confidence 45557777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CeeccceecCcEEcCccccCceeCHHHHHH
Q 023440 191 TVLTRSDLGGAIIEGADFSDAVIDLAQKQA 220 (282)
Q Consensus 191 a~l~~a~l~~a~L~gAdf~~A~l~~~~~~~ 220 (282)
++|++++|.+++|++++|++|+|.+..+..
T Consensus 127 a~l~~a~l~~a~f~~a~L~gadf~~a~l~~ 156 (184)
T 2f3l_A 127 AVLTEAIMMRTKFDDAKITGADFSLAVLDV 156 (184)
T ss_dssp CBCTTCEEEEEECTTCBCTTCBCTTCEECH
T ss_pred CEeeCCEECCCEEeCCEecCCEecCCCCCc
Confidence 777777777777777777777777665443
No 11
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=99.76 E-value=3.1e-19 Score=155.41 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=22.9
Q ss_pred cccccCceecCCeeccceecCcEEcCccccCceeCHHHHHHHhh
Q 023440 180 EANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCK 223 (282)
Q Consensus 180 ~adL~~A~l~~a~l~~a~l~~a~L~gAdf~~A~l~~~~~~~lc~ 223 (282)
+++|.+++|++++|++++|.++++++++|++++++..|+..+++
T Consensus 165 ~a~l~~~~l~~a~l~~a~l~~~~l~~~~l~ga~~~~~q~~~l~~ 208 (216)
T 3pss_A 165 QIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLE 208 (216)
T ss_dssp SCCGGGSBCTTCBCTTCCCTTCCTTTSCCTTCEEEGGGHHHHHH
T ss_pred CCeecCcccCCCCccCCEecCcccccCcccCcEeCHHHHHHHHH
Confidence 33333444444444444455555555566666666666666554
No 12
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.76 E-value=6.8e-19 Score=151.51 Aligned_cols=105 Identities=11% Similarity=0.224 Sum_probs=54.8
Q ss_pred CCceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcc------cceeeecccc
Q 023440 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTL------MDRMVLNEAN 182 (282)
Q Consensus 109 s~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~------l~~a~f~~ad 182 (282)
.+++|++++|++++|++++|.+++|.+|+|++|+|++++|.+++|.++.|.+|+|.+++|++++ +.+++|.+|+
T Consensus 27 ~~~~~~~~~f~~~~~~~~~l~~~~~~~~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~f~~a~~~~~~~l~~~~f~~~~ 106 (200)
T 2xt2_A 27 ESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCI 106 (200)
T ss_dssp ESCEEESCEEESCBCTTCEEESCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBGGGSCCCSSCCTTSEEEESCB
T ss_pred ccCEEccCEEEeeeccCCeecCCEEEecEeeecccccCccccCeeeeeEEEcCEecCCccccCcccccccccceEEEcCc
Confidence 3455555555555555555555555555555666666666666666666666666666655555 4444444444
Q ss_pred ccCceecCCeeccceecCcEEcCccccCcee
Q 023440 183 LTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 213 (282)
Q Consensus 183 L~~A~l~~a~l~~a~l~~a~L~gAdf~~A~l 213 (282)
|++++|.+++|.+++|.+++|++++|++|+|
T Consensus 107 l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l 137 (200)
T 2xt2_A 107 LNDSLFYGLYLAGVKMVECRIHDANFTEADC 137 (200)
T ss_dssp CTTCBCTTCBCTTCEEESCBCTTCBCTTCBC
T ss_pred ccccEEccCccCCCEecCCEeecccCCCCcc
Confidence 4444444444444444444333333333333
No 13
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.75 E-value=3.5e-19 Score=153.31 Aligned_cols=13 Identities=0% Similarity=-0.118 Sum_probs=4.7
Q ss_pred eccceeccccccC
Q 023440 158 AYKANFTGADLSD 170 (282)
Q Consensus 158 l~~a~l~gAdls~ 170 (282)
|.+|+|++++|.+
T Consensus 102 f~~~~l~~a~f~~ 114 (200)
T 2xt2_A 102 FERCILNDSLFYG 114 (200)
T ss_dssp EESCBCTTCBCTT
T ss_pred EEcCcccccEEcc
Confidence 3333333333333
No 14
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=99.71 E-value=3e-18 Score=171.62 Aligned_cols=105 Identities=23% Similarity=0.333 Sum_probs=46.8
Q ss_pred CCCceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCce
Q 023440 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV 187 (282)
Q Consensus 108 ls~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~ 187 (282)
+++++|++++|++++|.+++|.+++|.+|+|++|+|.+|+|.+++|.+|+|.+|+|.+|+|++|+|. +.|.+|+|++|+
T Consensus 34 fsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~-a~L~~A~LsgAd 112 (613)
T 3nb2_A 34 YSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIR-ALFENSNFSNSN 112 (613)
T ss_dssp CTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEE-EECTTCBCTTCB
T ss_pred eCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCccc-ceeccCEecCCe
Confidence 3444444444444444444444444444444444555555555555555555555555555544411 114444444444
Q ss_pred ecCCeeccceecC--cEEcCccccCcee
Q 023440 188 LVRTVLTRSDLGG--AIIEGADFSDAVI 213 (282)
Q Consensus 188 l~~a~l~~a~l~~--a~L~gAdf~~A~l 213 (282)
|.+|+|++++|.+ |+|++|+|++|.|
T Consensus 113 L~~AdL~gA~f~~~~adL~gAdL~gA~L 140 (613)
T 3nb2_A 113 LKNASFKGSSYIQYPPILNEADLTGAII 140 (613)
T ss_dssp CTTCBCTTCBCSSSCCBCTTCBCTTCEE
T ss_pred ecccEEeccEEecCccceeccccCCCee
Confidence 4444444444433 3333333333333
No 15
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=99.71 E-value=3.6e-18 Score=171.04 Aligned_cols=110 Identities=17% Similarity=0.274 Sum_probs=71.5
Q ss_pred CCCceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceecccc----ccCcccceeeeccccc
Q 023440 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD----LSDTLMDRMVLNEANL 183 (282)
Q Consensus 108 ls~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAd----ls~a~l~~a~f~~adL 183 (282)
+++++|.+++|++++|.+++|.+++|.+|+|.+|+|.+|+|.+++|.+|+|.+|+|++|+ |.+|+|.+++|.+|+|
T Consensus 39 Lsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~a~L~~A~LsgAdL~~AdL 118 (613)
T 3nb2_A 39 LSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNLKNASF 118 (613)
T ss_dssp CTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEECTTCBCTTCBCTTCBC
T ss_pred ecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCcccceeccCEecCCeecccEE
Confidence 556666666666666666666666666666666666666666666666666666666666 6666666666666666
Q ss_pred cCceecC--CeeccceecCcEE-cCccccCceeCHHH
Q 023440 184 TNAVLVR--TVLTRSDLGGAII-EGADFSDAVIDLAQ 217 (282)
Q Consensus 184 ~~A~l~~--a~l~~a~l~~a~L-~gAdf~~A~l~~~~ 217 (282)
++++|.+ |+|++++|.+|+| ++++|++|+|++.+
T Consensus 119 ~gA~f~~~~adL~gAdL~gA~Ll~gAdLsgA~L~~a~ 155 (613)
T 3nb2_A 119 KGSSYIQYPPILNEADLTGAIIIPGMVLSGAILGDVK 155 (613)
T ss_dssp TTCBCSSSCCBCTTCBCTTCEECTTCCCTTCBCCCCS
T ss_pred eccEEecCccceeccccCCCeeCCCceecCCCccCCe
Confidence 6666665 6666666666666 66666666665543
No 16
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.66 E-value=4.5e-17 Score=161.83 Aligned_cols=107 Identities=16% Similarity=0.213 Sum_probs=52.6
Q ss_pred CceEccccccccccCCc------eeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccc
Q 023440 110 AAQFGSADLRKAVHVKE------NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANL 183 (282)
Q Consensus 110 ~~~f~~~dL~~~~f~~a------dl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL 183 (282)
+.+|+++||++++|.++ +..+++|.+++|++|+|.+++|++++|.+|+|.+|+|++|+|.+|+|.+|+|.+|+|
T Consensus 39 drDFsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAnL 118 (627)
T 2qyu_A 39 DRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFL 118 (627)
T ss_dssp TTBCTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCEE
T ss_pred CCcCCCCCCCCCccccccccccccccCCccCCCccCCCccCCCCCCCCccCCcccCCCchhhhccccceECCcCCCCccc
Confidence 46677777777776664 223333444444444444444444444444444444444444444444444444444
Q ss_pred cCceec--CCeeccceecCcEE-cCccccCceeCHH
Q 023440 184 TNAVLV--RTVLTRSDLGGAII-EGADFSDAVIDLA 216 (282)
Q Consensus 184 ~~A~l~--~a~l~~a~l~~a~L-~gAdf~~A~l~~~ 216 (282)
.+|+|. +|+|.+|+|.+++| +||+|++|+|++.
T Consensus 119 ~gA~L~~~gAnLsgAdL~gA~L~~gAdLsGA~L~~a 154 (627)
T 2qyu_A 119 QYSITTQQQPSFIDTTLKNTLIRHKANLSGVILNEP 154 (627)
T ss_dssp CCCTTCCSCCEEEEEECTTCEECSCCEEEEEECCCC
T ss_pred CCccccCCCCeeCCCCCCCCccccCccCCCCcCCCC
Confidence 444443 45555555555555 4566666666544
No 17
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.60 E-value=4e-16 Score=155.06 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=44.5
Q ss_pred CCCceEcccccccc------ccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccc
Q 023440 108 GSAAQFGSADLRKA------VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEA 181 (282)
Q Consensus 108 ls~~~f~~~dL~~~------~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~a 181 (282)
+++++|++++|.++ +..+|+|.|++|++++|++++|++++|++|+|.+|+|.+|+|++|+|++|+|.+++|.+|
T Consensus 42 Fsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAnL~gA 121 (627)
T 2qyu_A 42 FSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYS 121 (627)
T ss_dssp CTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCEECCC
T ss_pred CCCCCCCCCccccccccccccccCCccCCCccCCCccCCCCCCCCccCCcccCCCchhhhccccceECCcCCCCcccCCc
Confidence 55666666665554 233333333333333333333333333333333333333333333333333333333333
Q ss_pred ccc--CceecCCeecccee-cCcEEcCccccCce
Q 023440 182 NLT--NAVLVRTVLTRSDL-GGAIIEGADFSDAV 212 (282)
Q Consensus 182 dL~--~A~l~~a~l~~a~l-~~a~L~gAdf~~A~ 212 (282)
+|+ +|+|.+|+|++++| .+|+|+||+|.++.
T Consensus 122 ~L~~~gAnLsgAdL~gA~L~~gAdLsGA~L~~ad 155 (627)
T 2qyu_A 122 ITTQQQPSFIDTTLKNTLIRHKANLSGVILNEPD 155 (627)
T ss_dssp TTCCSCCEEEEEECTTCEECSCCEEEEEECCCCC
T ss_pred cccCCCCeeCCCCCCCCccccCccCCCCcCCCCc
Confidence 332 34444444444444 34444444444444
Done!