Citrus Sinensis ID: 023441
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 282 | 2.2.26 [Sep-21-2011] | |||||||
| Q7Z9I2 | 253 | Uncharacterized oxidoredu | yes | no | 0.833 | 0.928 | 0.316 | 6e-25 | |
| Q9P7I6 | 254 | Uncharacterized oxidoredu | no | no | 0.843 | 0.937 | 0.289 | 4e-20 | |
| Q7Z9I4 | 253 | Uncharacterized oxidoredu | no | no | 0.829 | 0.924 | 0.293 | 1e-19 | |
| Q7Z9I3 | 253 | Uncharacterized oxidoredu | no | no | 0.829 | 0.924 | 0.293 | 8e-19 | |
| P21158 | 166 | C-factor OS=Myxococcus xa | no | no | 0.553 | 0.939 | 0.316 | 9e-19 | |
| P36086 | 256 | Uncharacterized oxidoredu | yes | no | 0.812 | 0.894 | 0.292 | 3e-14 | |
| P40580 | 263 | Benzil reductase ((S)-ben | no | no | 0.843 | 0.904 | 0.242 | 5e-14 | |
| F1SWA0 | 267 | Zerumbone synthase OS=Zin | N/A | no | 0.687 | 0.726 | 0.258 | 4e-12 | |
| P55336 | 244 | 3-oxoacyl-[acyl-carrier-p | no | no | 0.705 | 0.815 | 0.273 | 2e-10 | |
| Q9PKF7 | 248 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.804 | 0.915 | 0.265 | 2e-10 |
| >sp|Q7Z9I2|YCP9_SCHPO Uncharacterized oxidoreductase C663.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC663.09c PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 130/265 (49%), Gaps = 30/265 (11%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
V + G +RGIGL K+L + + V A+ R P AT L + P + ++LD+T
Sbjct: 7 VYFIAGGNRGIGLSLVKELSSR-EGTTVFASARKPEAATELQEWSKSHP-NVKTVELDVT 64
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGIL-SIPNVLQ-PETTLNKVEKSSLMLAYEVNAV 147
+ + +A+S+ + +++L SGI S V++ PE N Y+ N +
Sbjct: 65 SQQSANEAAQSVAKAVDGIDVLWLNSGICQSYYTVMEAPEEVWNA--------HYQTNVL 116
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
GPI V K PLL ++ V S+ GS+GD R G+ +Y SKAA+N K
Sbjct: 117 GPIHVFKAFYPLL------TKKKTRQVIFTSSECGSMGDFRATGFSAYGQSKAAINFTMK 170
Query: 208 SVSVEFGRKKDPVICILLHPGTVDTDLS----RPFQRNVPEGKLFTK------EFSVQKL 257
+SVE + I I HPG V TD++ + F PE + K E SV +
Sbjct: 171 ELSVELADEHFTFISI--HPGVVKTDMNADAIKKFTETSPEMLTYLKKVTIIPEESVSSM 228
Query: 258 LNIINNIKSHDNGKFFAWDGQEIPW 282
L +++N+K +NG F+ +DG IP+
Sbjct: 229 LKVVDNLKPENNGSFYRYDGTIIPF 253
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1EC: .EC: -EC: .EC: -EC: .EC: - |
| >sp|Q9P7I6|YJNK_SCHPO Uncharacterized oxidoreductase C24B10.20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC24B10.20 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 133/266 (50%), Gaps = 28/266 (10%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G V ++ G +RGIGL K+L N +G V A+ R P A+ L D ++ + +++L
Sbjct: 6 GIVYVIVGGNRGIGLSLVKEL--SNKEGVTVFASARGPGSASELKDW-SKTHSNVHIIKL 62
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T + + +A +++ +++L SGI QP + K M Y+ N
Sbjct: 63 DVTSLRSAKDAAMQVEKVVKCIDVLWVNSGI---SKSFQP---VLKTSDELWMSHYQTNV 116
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
+GPI V + LLK G +++ ++++A +G + N + +Y SKAALN
Sbjct: 117 LGPIHVYQAFYHLLKEGKL---KNIVFTSSMAACMGGVRPNT---YSAYGQSKAALNYTM 170
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDL----SRPFQRNVPE------GKLFTKEFSVQK 256
K +S E +KD + + +HPG V+TD+ + PE + E S
Sbjct: 171 KEISFEL--EKDGFVVVSIHPGVVNTDMFVNAMQKLASKYPEMVESIKSNAISPEQSASS 228
Query: 257 LLNIINNIKSHDNGKFFAWDGQEIPW 282
+L I++N+K+ DNG F+ DG ++P+
Sbjct: 229 MLKIVDNLKTEDNGMFYNLDGTKLPF 254
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q7Z9I4|YCP6_SCHPO Uncharacterized oxidoreductase C663.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC663.06c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 128/266 (48%), Gaps = 32/266 (12%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVI-ATCRNPNGATGLLDLKNRFPERLDVLQLDL 88
+ + G +RGIGL K+L N +G V+ A+ R P AT L + ++ + +++LD+
Sbjct: 7 IYFIAGGNRGIGLSLVKEL--SNREGTVVFASARKPEAATELQEW-SKSHSNVHIIKLDI 63
Query: 89 TVESTIEASAKSIKEKYGSLNLLINASGILSIPNVL--QPETTLNKVEKSSLMLAYEVNA 146
+ + +A+ + + G +++L SGI N + P+ N Y+ N
Sbjct: 64 SSLESANEAAQEVAKAVGKVDVLWVNSGIFHSFNTVLNTPDDVWNS--------HYKTNV 115
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
+GPI V + PL+K G + I + S+ VGS+G Y SKAALN
Sbjct: 116 LGPIHVYQAFYPLVKKGESKI------IVFTSSLVGSMGAFFPFNQSGYGQSKAALNFTM 169
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGK-----LFTKEF-----SVQK 256
K +S E + + I I +HPG V TD ++ E K +F K+ S
Sbjct: 170 KEISFEL--QDEGFIVISIHPGMVRTDSAQEAVNQHAEAKPEILDIFAKQALAPDQSASD 227
Query: 257 LLNIINNIKSHDNGKFFAWDGQEIPW 282
+L +++N+K +NG FF +DG IP+
Sbjct: 228 MLKVVDNLKPENNGFFFNYDGTTIPY 253
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q7Z9I3|YCP8_SCHPO Uncharacterized oxidoreductase C663.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC663.08c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 130/266 (48%), Gaps = 32/266 (12%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVI-ATCRNPNGATGLLDLKNRFPERLDVLQLDL 88
+ + G +RGIGL K+L N KG V+ A+ R P AT L + ++ + +++LD+
Sbjct: 7 IYFIAGGNRGIGLSLVKEL--SNRKGTVVFASARKPGAATKLQEW-SKSHSNVHIIKLDV 63
Query: 89 TVESTIEASAKSIKEKYGSLNLL-INASGILSI-PNVLQPETTLNKVEKSSLMLAYEVNA 146
+ + +A+ + + ++++L +N++ S P V P+ N Y+ N
Sbjct: 64 SSLESANEAAQEVTKVVDAVDVLWVNSAVFHSFGPVVNTPDDVWNS--------HYKTNV 115
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
+GPI V + PL+K G + I + S+ GS+G +Y SKAALN
Sbjct: 116 LGPIHVYQAFYPLIKKGRSKI------IVFTSSLAGSMGAFFPSSQSAYGQSKAALNYTM 169
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGK-----LFTK-----EFSVQK 256
K +S E + + I I +HPG V TD ++ E K LF K E S
Sbjct: 170 KEISFEL--QDEGFIVISIHPGAVRTDSAQEIVNQHAEKKPEILDLFAKQALTPEKSASD 227
Query: 257 LLNIINNIKSHDNGKFFAWDGQEIPW 282
+L +++N+K +NG F+ +DG IP+
Sbjct: 228 MLKVVDNLKPENNGLFYNYDGTIIPF 253
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|P21158|CSGA_MYXXA C-factor OS=Myxococcus xanthus GN=csgA PE=1 SV=1 | Back alignment and function description |
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Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 98/177 (55%), Gaps = 21/177 (11%)
Query: 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGT 165
G +++LIN +G+ + L V+ + + + +NA+GP+ V M P L+ G
Sbjct: 11 GPVDVLINNAGVSGL------WCALGDVDYADMARTFTINALGPLRVTSAMLPGLRQGA- 63
Query: 166 GIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILL 225
+ R VA++++R+GS+ N GG ++YR SKAALN +S+S + + + + +LL
Sbjct: 64 -LRR----VAHVTSRMGSLAANTDGGAYAYRMSKAALNMAVRSMSTDL--RPEGFVTVLL 116
Query: 226 HPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282
HPG V TD+ P+ L + SV+ +L +I+ + +G+FF + G E+PW
Sbjct: 117 HPGWVQTDMGG------PDATLPAPD-SVRGMLRVIDGLNPEHSGRFFDYQGTEVPW 166
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Cell-cell signaling protein required for fruiting body morphogenesis. Necessary for cellular aggregation, for spore differentiation, and for gene expression that is initiated after 6 hour of starvation. Myxococcus xanthus (taxid: 34) |
| >sp|P36086|YKH1_YEAST Uncharacterized oxidoreductase YKL071W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL071W PE=1 SV=1 | Back alignment and function description |
|---|
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 121/263 (46%), Gaps = 34/263 (12%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN-----RFPERLDVLQL 86
+ G SRGIG K +L + VI + R G+ L K + + + ++QL
Sbjct: 10 FIIGGSRGIGFNLVK-ILSASTGNTVITSIR---GSPSLPKNKQVEDLAKIRKNIHIVQL 65
Query: 87 DLTVESTIEASAKSIKEK--YGSLNLLINASGIL-SIPNVLQPETTLNKVEKSSLMLAYE 143
DLT + +I A IK+ + +++ I S + S VL+ KS + Y
Sbjct: 66 DLTKDESIGNIADEIKKTPFFLGIDIFIACSAVSDSYYKVLE-------TPKSVWLNHYS 118
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
NA+GPIL ++ + PLL + T R + +++++ GSI +Y SKAALN
Sbjct: 119 TNALGPILALQKVYPLLLLKKT---RKIFFISSVA---GSINAFVPLSVSAYGQSKAALN 172
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL-------FTKEFSVQK 256
K++S E K + + HPG V TD+ + + E + T E S
Sbjct: 173 YAVKTLSFEL--KPEGFTVVAFHPGMVSTDMGQYGLDHFKEKNIDISGVNIITPEESASA 230
Query: 257 LLNIINNIKSHDNGKFFAWDGQE 279
L+++ I DNGKFF +DG E
Sbjct: 231 LIDVFRKILPEDNGKFFNYDGSE 253
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P40580|BZRD_YEAST Benzil reductase ((S)-benzoin forming) IRC24 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRC24 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 122/272 (44%), Gaps = 34/272 (12%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-PERLDVLQL 86
G V L+ GASRGIGL+ K ++E++D+ V R GL L+ + ++ L
Sbjct: 2 GKVILITGASRGIGLQLVKTVIEEDDECIVYGVART---EAGLQSLQREYGADKFVYRVL 58
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T S +EA + I++K+G L+ ++ +G+L + + + +++ + ++VN
Sbjct: 59 DITDRSRMEALVEEIRQKHGKLDGIVANAGMLEPVKSISQSNSEHDIKQWERL--FDVNF 116
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
+ ++ PLLK V N+ GW +Y SKAALN
Sbjct: 117 FSIVSLVALCLPLLKSS--------PFVGNIVFVSSGASVKPYNGWSAYGCSKAALNHFA 168
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNV-PEG------KLFTKEFSVQKLLN 259
++ E K +CI PG VDT + + + + P+G + FT+ + LL+
Sbjct: 169 MDIASEEPSDKVRAVCI--APGVVDTQMQKDIRETLGPQGMTPKALERFTQLYKTSSLLD 226
Query: 260 -----------IINNIKSHDNGKFFAWDGQEI 280
++ I NG++ ++ + +
Sbjct: 227 PKVPAAVLAQLVLKGIPDSLNGQYLRYNDERL 258
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Reduces benzil stereospecifically to (S)-benzoin. Is probably involved in a pathway contributing to genomic integrity. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 2 EC: 0 |
| >sp|F1SWA0|ZERSY_ZINZE Zerumbone synthase OS=Zingiber zerumbet GN=ZSD1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 109/232 (46%), Gaps = 38/232 (16%)
Query: 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLD- 82
++ +G V+LV G + GIG A+ +E K C++ +L + +RL
Sbjct: 1 MRLEGKVALVTGGASGIGESIARLFIEHGAKICIVDVQD---------ELGQQVSQRLGG 51
Query: 83 -----VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSS 137
D+TVE + + EKYG++++++N +GI + + N+ +K
Sbjct: 52 DPHACYFHCDVTVEDDVRRAVDFTAEKYGTIDIMVNNAGITGDKVIDIRDADFNEFKK-- 109
Query: 138 LMLAYEVNAVGPILVIKHMSPLL--KVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSY 195
+++N G L +KH + ++ K+ G+ + +A++S+ + G H Y
Sbjct: 110 ---VFDINVNGVFLGMKHAARIMIPKMKGS-----IVSLASVSSVIAG------AGPHGY 155
Query: 196 RASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL 247
+K A+ LTKSV+ E GR V C+ P V T LS P+ +PE ++
Sbjct: 156 TGAKHAVVGLTKSVAAELGRHGIRVNCV--SPYAVPTRLSMPY---LPESEM 202
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Catalyzes 8-hydroxy-alpha-humulene into zerumbone in presence of NAD. Also converts borneol to camphor in vitro. Zerumbone is a highly promising multi-anticancer agent. Zingiber zerumbet (taxid: 311405) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 2 EC: 6 |
| >sp|P55336|FABG_VIBHA 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Vibrio harveyi GN=fabG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 119/234 (50%), Gaps = 35/234 (14%)
Query: 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDV 83
+ +G ++LV GASRGIG A+ L+E+ VI T + GA + + E
Sbjct: 1 MNLEGKIALVTGASRGIGRAIAELLVERG--ATVIGTATSEGGAAAISEY---LGENGKG 55
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVL--QPETTLNKVEKSSLMLA 141
L L++T +IEA+ K+I ++ G++++L+N +GI + N+L + N + ++L
Sbjct: 56 LALNVTDVESIEATLKTINDECGAIDILVNNAGI-TRDNLLMRMKDDEWNDIINTNLTPI 114
Query: 142 YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
Y ++ V++ M +++ + N+ + VG++G+ G +Y A+KA
Sbjct: 115 YRMSKA----VLRGM----------MKKRAGRIINVGSVVGTMGN---AGQTNYAAAKAG 157
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---QR-----NVPEGKL 247
+ TKS++ E + V + PG ++TD+++ QR NVP G+L
Sbjct: 158 VIGFTKSMAREVASRG--VTVNTVAPGFIETDMTKALNDDQRAATLSNVPAGRL 209
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Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Vibrio harveyi (taxid: 669) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 EC: 0 |
| >sp|Q9PKF7|FABG_CHLMU 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Chlamydia muridarum (strain MoPn / Nigg) GN=fabG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 120/256 (46%), Gaps = 29/256 (11%)
Query: 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV 90
++V G SRGIG AK L ++ I G + DL ++ ++ +D++
Sbjct: 10 AIVTGGSRGIGFGIAK-LFAEHGANVQIWGINEEAGKSAAQDLSDKTGSKVSFALVDVSK 68
Query: 91 ESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEVNAVGP 149
+ A + +YG++++++N +GI +++ E + V ++L Y V +
Sbjct: 69 NDMVSAQVQKFLAEYGTIDVVVNNAGITRDSLLMRMSEEEWSSVIDTNLGSIYNVCSA-- 126
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
VI+ P++K R A+V N+S+ VG G G +Y A+KA + +K++
Sbjct: 127 --VIR---PMIKA------RSGAIV-NISSIVGLRGSP---GQTNYAAAKAGIIGFSKAL 171
Query: 210 SVEFGRKKDPVICILLHPGTVDTDLSRPFQRN--------VPEGKLFTKEFSVQKLLNII 261
S E G K V CI PG +DTD+++ N VP G++ T E L +
Sbjct: 172 SKEVGSKNIRVNCI--APGFIDTDMTKGLSDNLKNEWLKGVPLGRVGTPEEIAMAALFLA 229
Query: 262 NNIKSHDNGKFFAWDG 277
+N S+ G+ + DG
Sbjct: 230 SNQSSYITGQVLSVDG 245
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Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Chlamydia muridarum (strain MoPn / Nigg) (taxid: 243161) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 282 | ||||||
| 224115622 | 279 | predicted protein [Populus trichocarpa] | 0.985 | 0.996 | 0.837 | 1e-134 | |
| 359483478 | 289 | PREDICTED: uncharacterized oxidoreductas | 0.960 | 0.937 | 0.850 | 1e-131 | |
| 255586225 | 296 | short-chain dehydrogenase, putative [Ric | 0.911 | 0.868 | 0.872 | 1e-129 | |
| 449515941 | 289 | PREDICTED: uncharacterized oxidoreductas | 1.0 | 0.975 | 0.788 | 1e-126 | |
| 449435932 | 275 | PREDICTED: uncharacterized oxidoreductas | 0.932 | 0.956 | 0.829 | 1e-124 | |
| 297804086 | 298 | short-chain dehydrogenase/reductase fami | 0.989 | 0.936 | 0.779 | 1e-122 | |
| 30685197 | 298 | Rossmann-fold NAD(P)-binding domain-cont | 0.911 | 0.862 | 0.817 | 1e-121 | |
| 356529026 | 287 | PREDICTED: uncharacterized oxidoreductas | 0.957 | 0.940 | 0.770 | 1e-118 | |
| 255646970 | 291 | unknown [Glycine max] | 0.985 | 0.955 | 0.757 | 1e-118 | |
| 356555952 | 291 | PREDICTED: uncharacterized oxidoreductas | 0.985 | 0.955 | 0.757 | 1e-118 |
| >gi|224115622|ref|XP_002317081.1| predicted protein [Populus trichocarpa] gi|222860146|gb|EEE97693.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/283 (83%), Positives = 260/283 (91%), Gaps = 5/283 (1%)
Query: 1 MANSLFAFRSIRKVAFTSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT 60
MA L AFRSIR+ F AS+ +KW+GGVS+VQGASRGIGLEF KQLLEKNDKG VIAT
Sbjct: 1 MATPL-AFRSIRRACF---ASSGLKWEGGVSMVQGASRGIGLEFVKQLLEKNDKGHVIAT 56
Query: 61 CRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSI 120
CRNPNGATGL+DLKN+F ERL+++ +DLT+ESTIEASAK I+EKYGSLNLLINASGILSI
Sbjct: 57 CRNPNGATGLVDLKNKFAERLNIMPIDLTIESTIEASAKFIREKYGSLNLLINASGILSI 116
Query: 121 PNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGT-GIERDVAVVANLSA 179
PNVLQPETTL+KVE+SSLMLAYEVNAVGPIL IKHM PLLK GG G ERDVAVVANLSA
Sbjct: 117 PNVLQPETTLSKVERSSLMLAYEVNAVGPILAIKHMWPLLKAGGGFGTERDVAVVANLSA 176
Query: 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ 239
RVGSIGDN LGGWHSYR+SKAALNQLTK+VSVEF RK+DP+ICILLHPGTVDTDLS+PFQ
Sbjct: 177 RVGSIGDNHLGGWHSYRSSKAALNQLTKTVSVEFARKRDPIICILLHPGTVDTDLSKPFQ 236
Query: 240 RNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282
RNVP+GKLFTKEFSVQ+LL+IINN KSHDNGKFFAWDGQEIPW
Sbjct: 237 RNVPDGKLFTKEFSVQQLLSIINNAKSHDNGKFFAWDGQEIPW 279
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483478|ref|XP_002269427.2| PREDICTED: uncharacterized oxidoreductase C663.09c-like [Vitis vinifera] gi|297740911|emb|CBI31093.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 233/274 (85%), Positives = 255/274 (93%), Gaps = 3/274 (1%)
Query: 10 SIRKVAFTSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69
S+R+ A S+ SA VKW+GGVS+VQGASRGIGLEF KQLLEKN+KG VIATCRNP+GAT
Sbjct: 18 SVRR-ALLSTCSA-VKWEGGVSMVQGASRGIGLEFVKQLLEKNEKGHVIATCRNPDGATA 75
Query: 70 LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETT 129
LLDLKN F ERL++LQLDLT+ESTIEASA SI+E+YGSLNLLINASGILSIPN+LQPETT
Sbjct: 76 LLDLKNEFAERLNILQLDLTIESTIEASANSIRERYGSLNLLINASGILSIPNILQPETT 135
Query: 130 LNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKV-GGTGIERDVAVVANLSARVGSIGDNR 188
L+KV+KSSL+LAYEVNAVGPILVIKHM PLL GG+G ERDVAVVANLSARVGSIGDNR
Sbjct: 136 LSKVQKSSLLLAYEVNAVGPILVIKHMWPLLTAGGGSGTERDVAVVANLSARVGSIGDNR 195
Query: 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLF 248
LGGWHSYR+SKAALNQLTK++SVEF RKKDPVIC+LLHPGTVDTDLSRPFQRNVPEGKLF
Sbjct: 196 LGGWHSYRSSKAALNQLTKTISVEFVRKKDPVICLLLHPGTVDTDLSRPFQRNVPEGKLF 255
Query: 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282
TKEFSV KLL+IINN KSHDNGKFFAWDGQEIPW
Sbjct: 256 TKEFSVNKLLSIINNAKSHDNGKFFAWDGQEIPW 289
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255586225|ref|XP_002533767.1| short-chain dehydrogenase, putative [Ricinus communis] gi|223526304|gb|EEF28612.1| short-chain dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/258 (87%), Positives = 245/258 (94%), Gaps = 1/258 (0%)
Query: 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQ 85
W+GGVS+VQGASRGIGL+F KQLLEK++KG VIATCRNP+GATGLLDLKN+F ERL++ Q
Sbjct: 39 WEGGVSMVQGASRGIGLQFVKQLLEKDEKGHVIATCRNPDGATGLLDLKNKFDERLNIQQ 98
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
LDLT+ES+IEASA +I+EKYGSLNLLINASGILSIPN+LQPETTLNKVEKSSLMLAYEVN
Sbjct: 99 LDLTIESSIEASATAIREKYGSLNLLINASGILSIPNLLQPETTLNKVEKSSLMLAYEVN 158
Query: 146 AVGPILVIKHMSPLLKV-GGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
AVGPILVIKHM PLLK GG+G +RDVAVVANLSARVGSIGDNRLGGWHSYR+SKAALNQ
Sbjct: 159 AVGPILVIKHMWPLLKAGGGSGTQRDVAVVANLSARVGSIGDNRLGGWHSYRSSKAALNQ 218
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNI 264
LTK+VSVE RK+DPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINN
Sbjct: 219 LTKTVSVELARKRDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNA 278
Query: 265 KSHDNGKFFAWDGQEIPW 282
+S DNGKFFAWDGQEIPW
Sbjct: 279 RSQDNGKFFAWDGQEIPW 296
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449515941|ref|XP_004165006.1| PREDICTED: uncharacterized oxidoreductase C663.09c-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/284 (78%), Positives = 253/284 (89%), Gaps = 2/284 (0%)
Query: 1 MANSLFAFRSIRKVA-FTSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIA 59
+ + +FA R++R A + +S S KW+GGVS+VQGASRGIGLEF K LLEKN+KG V+A
Sbjct: 6 LNHPMFAPRTLRSFARMPTFSSLSSKWEGGVSMVQGASRGIGLEFVKHLLEKNEKGHVVA 65
Query: 60 TCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILS 119
TCRNP ATGLL+LKN+F ERL +LQLD+T E+TI+ASAKSI+E+YGSLNLLINASGILS
Sbjct: 66 TCRNPGQATGLLELKNKFDERLCILQLDVTNETTIKASAKSIEERYGSLNLLINASGILS 125
Query: 120 IPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLS 178
IPNV+QPETTL KVEKSSL+ AYEVNAVGPILVIKH+ P LK GG +G ER+VAVVANLS
Sbjct: 126 IPNVIQPETTLYKVEKSSLLHAYEVNAVGPILVIKHLWPFLKAGGGSGTEREVAVVANLS 185
Query: 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
ARVGSIGDNRLGGWHSYRASK ALNQLTK+VSVEF RKKDP++CILLHPGTVDTDLSRPF
Sbjct: 186 ARVGSIGDNRLGGWHSYRASKTALNQLTKNVSVEFARKKDPIVCILLHPGTVDTDLSRPF 245
Query: 239 QRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282
QRNVPEGKLFTKEFSVQKL+ IINN KS DNG+FFAWDGQEIPW
Sbjct: 246 QRNVPEGKLFTKEFSVQKLMTIINNAKSQDNGRFFAWDGQEIPW 289
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435932|ref|XP_004135748.1| PREDICTED: uncharacterized oxidoreductase C663.09c-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/264 (82%), Positives = 242/264 (91%), Gaps = 1/264 (0%)
Query: 20 ASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE 79
A ++KW+GGVS+VQGASRGIGLEF K LLEKN+KG V+ATCRNP ATGLL+LKN+F E
Sbjct: 12 APRTLKWEGGVSMVQGASRGIGLEFVKHLLEKNEKGHVVATCRNPGQATGLLELKNKFDE 71
Query: 80 RLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLM 139
RL +LQLD+T E+TI+ASAKSI+E+YGSLNLLINASGILSIPNV+QPETTL KVEKSSL+
Sbjct: 72 RLCILQLDVTNETTIKASAKSIEERYGSLNLLINASGILSIPNVIQPETTLYKVEKSSLL 131
Query: 140 LAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
AYEVNAVGPILVIKH+ P LK GG +G ER+VAVVANLSARVGSIGDNRLGGWHSYRAS
Sbjct: 132 HAYEVNAVGPILVIKHLWPFLKAGGGSGTEREVAVVANLSARVGSIGDNRLGGWHSYRAS 191
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLL 258
K ALNQLTK+VSVEF RKKDP++CILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKL+
Sbjct: 192 KTALNQLTKNVSVEFARKKDPIVCILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLM 251
Query: 259 NIINNIKSHDNGKFFAWDGQEIPW 282
IINN KS DNGKFFAWDGQEIPW
Sbjct: 252 TIINNAKSQDNGKFFAWDGQEIPW 275
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804086|ref|XP_002869927.1| short-chain dehydrogenase/reductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297315763|gb|EFH46186.1| short-chain dehydrogenase/reductase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/281 (77%), Positives = 250/281 (88%), Gaps = 2/281 (0%)
Query: 4 SLFAFRSIRKVAFTSSASASV-KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR 62
++ A R +R A +S+S+S KW+GGVS+VQGASRGIGLEF +QLL N+KG V+ATCR
Sbjct: 18 AVVALRKMRVSALATSSSSSFPKWEGGVSMVQGASRGIGLEFVRQLLGNNEKGYVVATCR 77
Query: 63 NPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPN 122
NP AT L DLKNRF ERL + +LD+T E+TIE SA+S++E+YGSLNLLINA+GILSIP+
Sbjct: 78 NPKEATSLSDLKNRFSERLFIQKLDVTDETTIEESAESVRERYGSLNLLINAAGILSIPS 137
Query: 123 VLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARV 181
VLQPETTLNKVEKSSLMLAYEVNAVGPILV+KHM PLLK GG +G ER+VAVVANLSARV
Sbjct: 138 VLQPETTLNKVEKSSLMLAYEVNAVGPILVMKHMWPLLKAGGGSGTEREVAVVANLSARV 197
Query: 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN 241
GSIGDNRLGGWHSYRASK ALNQLTK+VSVE GR+KDPV+CILLHPGTVDTDLSRPFQ+N
Sbjct: 198 GSIGDNRLGGWHSYRASKTALNQLTKNVSVELGRRKDPVVCILLHPGTVDTDLSRPFQKN 257
Query: 242 VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282
VPEGKLFT+E+SVQKLL+IINN K DNGKFFAWDGQEIPW
Sbjct: 258 VPEGKLFTREYSVQKLLHIINNAKKQDNGKFFAWDGQEIPW 298
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30685197|ref|NP_193808.2| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gi|15450423|gb|AAK96505.1| AT4g20760/F21C20_110 [Arabidopsis thaliana] gi|23507787|gb|AAN38697.1| At4g20760/F21C20_110 [Arabidopsis thaliana] gi|332658958|gb|AEE84358.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/258 (81%), Positives = 234/258 (90%), Gaps = 1/258 (0%)
Query: 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQ 85
WKGGVS+VQGASRGIGLEF +QLLE N G V+ATCRNP AT L DLKNRF ERL + +
Sbjct: 41 WKGGVSMVQGASRGIGLEFVRQLLENNKNGYVVATCRNPKEATSLSDLKNRFSERLFIQK 100
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
LD+T E+TIE SA+S++EKYGSLNLLINA+GILSIP VLQPETTLNKVEKSSLMLAYEVN
Sbjct: 101 LDVTDETTIEESAESVREKYGSLNLLINAAGILSIPGVLQPETTLNKVEKSSLMLAYEVN 160
Query: 146 AVGPILVIKHMSPLLKV-GGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
AVGPILV+KHM PLLK GG+G +R+VAVVANLSARVGSIGDNRLGGWHSYRASK+ALNQ
Sbjct: 161 AVGPILVMKHMWPLLKAGGGSGTDREVAVVANLSARVGSIGDNRLGGWHSYRASKSALNQ 220
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNI 264
LTK+VSVE GR+KDPV CILLHPGTVDTDLSRPFQRNVP+GKLFT+E+SVQKLL+IINN
Sbjct: 221 LTKNVSVELGRRKDPVACILLHPGTVDTDLSRPFQRNVPDGKLFTREYSVQKLLHIINNT 280
Query: 265 KSHDNGKFFAWDGQEIPW 282
K D+GKFFAWDGQEIPW
Sbjct: 281 KKQDSGKFFAWDGQEIPW 298
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529026|ref|XP_003533098.1| PREDICTED: uncharacterized oxidoreductase C663.09c-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/274 (77%), Positives = 241/274 (87%), Gaps = 4/274 (1%)
Query: 10 SIRKVAFTSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69
S+ + AF+SS S+ ++GGVS+VQGASRGIGLEF KQ+LE +DK VIATCRNP+ +TG
Sbjct: 17 SLTRRAFSSSPSS---FQGGVSMVQGASRGIGLEFVKQILEYDDKEHVIATCRNPSASTG 73
Query: 70 LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETT 129
L+ LK++F +RL +L LDLTVE++IEASA SIKE YG LNLLINASGILSIP V+ PETT
Sbjct: 74 LIHLKDKFADRLKILSLDLTVETSIEASALSIKETYGRLNLLINASGILSIPEVMHPETT 133
Query: 130 LNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKV-GGTGIERDVAVVANLSARVGSIGDNR 188
LNKVEKSSLMLAYEVNAVGPILVIKHM PLLKV GG G R AVVA+LSARV SIGDNR
Sbjct: 134 LNKVEKSSLMLAYEVNAVGPILVIKHMWPLLKVGGGHGTGRSAAVVASLSARVASIGDNR 193
Query: 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLF 248
LGGWHSYR+SKA+LNQL+K+ S+EF R+KDPV+CILLHPGTVDTDLS+PFQRNVP KLF
Sbjct: 194 LGGWHSYRSSKASLNQLSKTASLEFARRKDPVVCILLHPGTVDTDLSKPFQRNVPPDKLF 253
Query: 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282
TKEFSVQKLL+IINN+K HDNGKFFAWDGQEIPW
Sbjct: 254 TKEFSVQKLLSIINNVKIHDNGKFFAWDGQEIPW 287
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255646970|gb|ACU23954.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/280 (75%), Positives = 242/280 (86%), Gaps = 2/280 (0%)
Query: 5 LFAFRSIRKVAFTSSASASVKWKG-GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN 63
+ A S R ++ T A +S ++G GVS+VQGASRGIGLEF KQLLE +DK VIATCRN
Sbjct: 12 MMASHSPRILSLTRRAFSSCSFQGEGVSMVQGASRGIGLEFVKQLLENDDKEHVIATCRN 71
Query: 64 PNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNV 123
P+ +TGL+ LK++F +RL +L LDLTVE++IEASA SI+E YG LNLLINASGILSIP V
Sbjct: 72 PSASTGLIHLKDKFADRLRILPLDLTVENSIEASALSIRETYGHLNLLINASGILSIPEV 131
Query: 124 LQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARVG 182
+ PETTLNKVEKSSLMLAYEVNAVGPILVIKHM PLLKVGG G R AVVA+LSARV
Sbjct: 132 IHPETTLNKVEKSSLMLAYEVNAVGPILVIKHMWPLLKVGGGHGTGRSAAVVASLSARVA 191
Query: 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNV 242
SIGDNRLGGWHSYR+SKAALNQL+K+VS+EF RKKDP++CILLHPGTVDTDLS+PFQRNV
Sbjct: 192 SIGDNRLGGWHSYRSSKAALNQLSKTVSLEFARKKDPIVCILLHPGTVDTDLSKPFQRNV 251
Query: 243 PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282
P KLFTKEFSVQKLL+IINN+K HDNGKFFAWDG+EIPW
Sbjct: 252 PPDKLFTKEFSVQKLLSIINNVKIHDNGKFFAWDGKEIPW 291
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555952|ref|XP_003546293.1| PREDICTED: uncharacterized oxidoreductase C663.09c-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/280 (75%), Positives = 242/280 (86%), Gaps = 2/280 (0%)
Query: 5 LFAFRSIRKVAFTSSASASVKWKG-GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN 63
+ A S R ++ T A +S ++G GVS+VQGASRGIGLEF KQLLE +DK VIATCRN
Sbjct: 12 MMASHSPRILSLTRRAFSSCSFQGEGVSMVQGASRGIGLEFVKQLLENDDKEHVIATCRN 71
Query: 64 PNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNV 123
P+ +TGL+ LK++F +RL +L LDLTVE++IEASA SI+E YG LNLLINASGILSIP V
Sbjct: 72 PSASTGLIHLKDKFADRLRILPLDLTVENSIEASALSIRETYGRLNLLINASGILSIPEV 131
Query: 124 LQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARVG 182
+ PETTLNKVEKSSLMLAYEVNAVGPILVIKHM PLLKVGG G R AVVA+LSARV
Sbjct: 132 IHPETTLNKVEKSSLMLAYEVNAVGPILVIKHMWPLLKVGGGHGTGRSAAVVASLSARVA 191
Query: 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNV 242
SIGDNRLGGWHSYR+SKAALNQL+K+VS+EF RKKDP++CILLHPGTVDTDLS+PFQRNV
Sbjct: 192 SIGDNRLGGWHSYRSSKAALNQLSKTVSLEFARKKDPIVCILLHPGTVDTDLSKPFQRNV 251
Query: 243 PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282
P KLFTKEFSVQKLL+IINN+K HDNGKFFAWDG+EIPW
Sbjct: 252 PPDKLFTKEFSVQKLLSIINNVKIHDNGKFFAWDGKEIPW 291
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 282 | ||||||
| TAIR|locus:2121469 | 298 | AT4G20760 [Arabidopsis thalian | 0.978 | 0.926 | 0.780 | 2.2e-112 | |
| ZFIN|ZDB-GENE-040426-1502 | 262 | zgc:65997 "zgc:65997" [Danio r | 0.890 | 0.958 | 0.471 | 6.4e-60 | |
| TIGR_CMR|SO_4170 | 236 | SO_4170 "C-factor, putative" [ | 0.663 | 0.792 | 0.429 | 2.2e-34 | |
| UNIPROTKB|F1NFS8 | 279 | LOC100857820 "Uncharacterized | 0.833 | 0.842 | 0.368 | 8.5e-33 | |
| TIGR_CMR|CPS_0516 | 244 | CPS_0516 "oxidoreductase, shor | 0.539 | 0.622 | 0.443 | 6e-32 | |
| ZFIN|ZDB-GENE-050419-83 | 256 | si:dkey-12e7.4 "si:dkey-12e7.4 | 0.829 | 0.914 | 0.335 | 1.6e-31 | |
| UNIPROTKB|Q9KR32 | 235 | VC_1815 "C-factor, putative" [ | 0.659 | 0.791 | 0.388 | 2e-31 | |
| TIGR_CMR|VC_1815 | 235 | VC_1815 "C-factor, putative" [ | 0.659 | 0.791 | 0.388 | 2e-31 | |
| UNIPROTKB|F1N9C1 | 254 | LOC415661 "Uncharacterized pro | 0.840 | 0.933 | 0.363 | 8.8e-31 | |
| UNIPROTKB|F1N9B0 | 263 | LOC769608 "Uncharacterized pro | 0.833 | 0.893 | 0.353 | 1.4e-30 |
| TAIR|locus:2121469 AT4G20760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
Identities = 217/278 (78%), Positives = 245/278 (88%)
Query: 7 AFRSIRKVAFTSSASASV-KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN 65
A + +R +S+S+SV WKGGVS+VQGASRGIGLEF +QLLE N G V+ATCRNP
Sbjct: 21 ALKRMRVSGLATSSSSSVPNWKGGVSMVQGASRGIGLEFVRQLLENNKNGYVVATCRNPK 80
Query: 66 GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ 125
AT L DLKNRF ERL + +LD+T E+TIE SA+S++EKYGSLNLLINA+GILSIP VLQ
Sbjct: 81 EATSLSDLKNRFSERLFIQKLDVTDETTIEESAESVREKYGSLNLLINAAGILSIPGVLQ 140
Query: 126 PETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARVGSI 184
PETTLNKVEKSSLMLAYEVNAVGPILV+KHM PLLK GG +G +R+VAVVANLSARVGSI
Sbjct: 141 PETTLNKVEKSSLMLAYEVNAVGPILVMKHMWPLLKAGGGSGTDREVAVVANLSARVGSI 200
Query: 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
GDNRLGGWHSYRASK+ALNQLTK+VSVE GR+KDPV CILLHPGTVDTDLSRPFQRNVP+
Sbjct: 201 GDNRLGGWHSYRASKSALNQLTKNVSVELGRRKDPVACILLHPGTVDTDLSRPFQRNVPD 260
Query: 245 GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282
GKLFT+E+SVQKLL+IINN K D+GKFFAWDGQEIPW
Sbjct: 261 GKLFTREYSVQKLLHIINNTKKQDSGKFFAWDGQEIPW 298
|
|
| ZFIN|ZDB-GENE-040426-1502 zgc:65997 "zgc:65997" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 123/261 (47%), Positives = 179/261 (68%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
V+LVQG+SRG+GLEF + LL +IATCRNP+ A L L + +RL VL+LD+
Sbjct: 4 VALVQGSSRGLGLEFCRYLLLNKSPAAIIATCRNPDAAHELSALSAQHADRLTVLRLDVN 63
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
E I+ +A+S+K +G ++L+IN+S +L P+ + ET+L V ++ N VGP
Sbjct: 64 REEDIKTAAESVKTAFGKVDLIINSSAMLH-PSG-KGETSLRDVSAQGVISTLTTNTVGP 121
Query: 150 ILVIKHMSPLLK--VGGTGI---ERDV---AVVANLSARVGSIGDNRLGGWHSYRASKAA 201
+++ K+ +PLL+ G G+ E+D ++ N++ARVGSIGDN LGGW+SYR SKAA
Sbjct: 122 LVMAKYFAPLLQRGTGAFGLQPPEKDKQHNGIMVNMTARVGSIGDNALGGWYSYRMSKAA 181
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261
LN T+++S+E GR + ++C+ LHPGTV+TDLSRP+ RNV + KLF+ E+SVQ L+NII
Sbjct: 182 LNMATRNLSIELGRGRSKIVCVSLHPGTVNTDLSRPYHRNVQKDKLFSTEYSVQCLMNII 241
Query: 262 NNIKSHDNGKFFAWDGQEIPW 282
+N+ GK +AWD +EIPW
Sbjct: 242 DNLNIDKTGKAYAWDSREIPW 262
|
|
| TIGR_CMR|SO_4170 SO_4170 "C-factor, putative" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 85/198 (42%), Positives = 122/198 (61%)
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
QLD+T+E I+ +++I + L+ LIN G+L + PE +L ++ + ++
Sbjct: 50 QLDITLEEEIKQLSQNIPQ----LDWLINCIGMLHTEDK-GPEKSLQTLDGDFFLDNIKL 104
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N + +L+ KH S LK + + A A +SARVGSI DNRLGGW+SYRASKAALN
Sbjct: 105 NTLPSMLLAKHFSHALK------QSNSARFAVISARVGSISDNRLGGWYSYRASKAALNM 158
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNI 264
K++S+E+ R + + LHPGT DT LS+PFQ++VP+ KLFT E+ Q L+ II N
Sbjct: 159 FLKTLSIEWQRSIKHCVVLSLHPGTTDTPLSKPFQQSVPKDKLFTPEYVAQCLVGIIANA 218
Query: 265 KSHDNGKFFAWDGQEIPW 282
G F A+DG E+PW
Sbjct: 219 TPTQTGTFLAYDGVELPW 236
|
|
| UNIPROTKB|F1NFS8 LOC100857820 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 98/266 (36%), Positives = 145/266 (54%)
Query: 32 LVQGASRGIGLEFAKQLLE-KNDKGCVIATCRNPNG--ATGLLDLKNRFPERLDVLQLDL 88
LV GA+RGIGL + LL N V ATCR+P G A L L ++ P L ++ L++
Sbjct: 30 LVTGANRGIGLGLVQHLLALPNPPEWVFATCRDPKGQRAQELQKLASKHPN-LVIVPLEV 88
Query: 89 TVESTIEASAKSIKEKY-GS-LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
T ++I+A+A S+ E+ GS LNLLIN +G+L+ N L+ ET ++ Y N
Sbjct: 89 TDPASIKAAAASVGERLKGSGLNLLINNAGVLNA-NTLETETL------KDMLHVYTTNT 141
Query: 147 VGPILVIKHMSPLLKVG-----GTGIERDVAVVANLSARVGSIGDNRLGGWH-----SYR 196
+ P+L+ + PLLK G+G+ A + N+S+ GSI L GW SYR
Sbjct: 142 IAPLLLSQAFLPLLKKAAQESPGSGMSCSKAAIVNISSIGGSISS--LTGWDVMELVSYR 199
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQK 256
SKAA N LT+ S+ G ++ ++C+ LHPG V TD+ R P T + SV
Sbjct: 200 CSKAAQNMLTRCQSM--GYREHGILCVALHPGWVQTDMGNVAGRTPP----LTVDASVGG 253
Query: 257 LLNIINNIKSHDNGKFFAWDGQEIPW 282
+L +++N+ D+G F W+G +PW
Sbjct: 254 MLKVLSNLSEKDSGAFLDWEGNPVPW 279
|
|
| TIGR_CMR|CPS_0516 CPS_0516 "oxidoreductase, short-chain dehydrogenase/reductase family" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 70/158 (44%), Positives = 95/158 (60%)
Query: 125 QPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184
QPE L + + N + P+L +KH++PLL R ++ +ARVGSI
Sbjct: 93 QPEKRLEDFSAEAFIKVINANTITPMLWLKHLTPLL----ASQHRCKIII--FTARVGSI 146
Query: 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
DN+LGGW+SYR+SKAA+N L KS +VE R+ + I HPGT DT LS+PFQ NVP+
Sbjct: 147 SDNKLGGWYSYRSSKAAMNMLIKSAAVELARRAKNIKLISFHPGTTDTPLSKPFQANVPQ 206
Query: 245 GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282
GKLFT EF ++LL I+ + F W G++IPW
Sbjct: 207 GKLFTCEFVAKQLLTIVEDTVIDGEASFLDWQGKDIPW 244
|
|
| ZFIN|ZDB-GENE-050419-83 si:dkey-12e7.4 "si:dkey-12e7.4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 88/262 (33%), Positives = 146/262 (55%)
Query: 32 LVQGASRGIGLEFAKQLLEKN-DKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV 90
++ GASRG+GL+ + L+ G +IAT RNPNGA L L + + + +++LD+
Sbjct: 12 MITGASRGLGLQIVESLVTGGFSPGKIIATARNPNGAKELQRLAEEY-QNIHIIKLDVIS 70
Query: 91 ESTIEASAKSIKE--KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVG 148
+ +IE +A ++E + LN LIN +GI + N+ ET V ++ + N+V
Sbjct: 71 QESIERAAAEVEELVQEEGLNCLINNAGINVVANL---ET----VTADQMLENFHTNSVA 123
Query: 149 PILVIKHMSPLLK---VGGTGIERDVAVVANLSARVGSI----GDNR-LGGWHSYRASKA 200
P+++ K M PLLK GTG+ A V N+++ +GS+ GD W+ YR SK+
Sbjct: 124 PLMITKAMLPLLKRAAAKGTGMGIHRAAVINVTSLLGSVELYWGDRADTFKWYPYRTSKS 183
Query: 201 ALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNI 260
ALN +T+ ++V+ + D ++C+ LHPG V TD+ P E L +E S+ +L++
Sbjct: 184 ALNMVTRCLAVDL--EADGILCMALHPGWVRTDMGGP------EAPLSPEE-SISSVLSV 234
Query: 261 INNIKSHDNGKFFAWDGQEIPW 282
I + D+G F + G+ +PW
Sbjct: 235 IGGLTEKDHGSFLHYTGETLPW 256
|
|
| UNIPROTKB|Q9KR32 VC_1815 "C-factor, putative" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 75/193 (38%), Positives = 113/193 (58%)
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
+++T EA +++ E++ ++ LIN G+L + PE LN ++ + NA+
Sbjct: 50 LDATQEAQVQALSEQFSQVDWLINCVGVLHTASK-GPEKNLNALDADFFLYNLIHNALPS 108
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
+L+ KH + LK + + A A LSA+VGSI DN+LGGW+SYRASKAALN L K++
Sbjct: 109 LLLAKHFTAKLK------QSEAAKFATLSAKVGSICDNQLGGWYSYRASKAALNMLLKTL 162
Query: 210 SVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIKSHDN 269
++E+ R + + LHPGT DT LS PF NV KLF+ L+ +I +
Sbjct: 163 AIEWQRSLKKGVVLALHPGTTDTKLSAPFHSNVAPDKLFSPARVAHDLIGLIAAATPEQS 222
Query: 270 GKFFAWDGQEIPW 282
G F+A+DGQ +PW
Sbjct: 223 GGFYAYDGQTLPW 235
|
|
| TIGR_CMR|VC_1815 VC_1815 "C-factor, putative" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 75/193 (38%), Positives = 113/193 (58%)
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
+++T EA +++ E++ ++ LIN G+L + PE LN ++ + NA+
Sbjct: 50 LDATQEAQVQALSEQFSQVDWLINCVGVLHTASK-GPEKNLNALDADFFLYNLIHNALPS 108
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
+L+ KH + LK + + A A LSA+VGSI DN+LGGW+SYRASKAALN L K++
Sbjct: 109 LLLAKHFTAKLK------QSEAAKFATLSAKVGSICDNQLGGWYSYRASKAALNMLLKTL 162
Query: 210 SVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIKSHDN 269
++E+ R + + LHPGT DT LS PF NV KLF+ L+ +I +
Sbjct: 163 AIEWQRSLKKGVVLALHPGTTDTKLSAPFHSNVAPDKLFSPARVAHDLIGLIAAATPEQS 222
Query: 270 GKFFAWDGQEIPW 282
G F+A+DGQ +PW
Sbjct: 223 GGFYAYDGQTLPW 235
|
|
| UNIPROTKB|F1N9C1 LOC415661 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 96/264 (36%), Positives = 143/264 (54%)
Query: 32 LVQGASRGIGLEFAKQLLE-KNDKGCVIATCRNPNG--ATGLLDLKNRFPERLDVLQLDL 88
LV GA+RGIGL F + LL N V ATCR+P G A L L ++ P L ++ L++
Sbjct: 5 LVTGANRGIGLGFVQHLLALSNPPEWVFATCRDPKGQRAQELQKLASKHPN-LVIVPLEV 63
Query: 89 TVESTIEASAKSIKEKY-GS-LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
T ++I+A+A S+ E+ GS LNLLIN +GI N + ET + E Y N
Sbjct: 64 TDPASIKAAAASVGERLKGSGLNLLINNAGIARA-NTIDNETLKDMSE------VYTTNT 116
Query: 147 VGPILVIKHMSPLLKVG-----GTGIERDVAVVANLSARVGSIGDNRL---GGWHSYRAS 198
+ P+L+ + P+LK G+G+ A + N+S+ GSI D L G SYR S
Sbjct: 117 IAPLLLSQAFLPMLKKAAQENPGSGLSCSKAAIINISSTAGSIQDLYLWQYGQALSYRCS 176
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLL 258
KAALN LT+ S+ G ++ + C+ LHPG V TD+ + + T + SV +L
Sbjct: 177 KAALNMLTRCQSM--GYREHGIFCVALHPGWVKTDMGGTLE----DKSRVTVDESVGGML 230
Query: 259 NIINNIKSHDNGKFFAWDGQEIPW 282
+++N+ D+G F W+G+ + W
Sbjct: 231 KVLSNLSEKDSGAFLNWEGKVMAW 254
|
|
| UNIPROTKB|F1N9B0 LOC769608 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 94/266 (35%), Positives = 143/266 (53%)
Query: 32 LVQGASRGIGLEFAKQLLE-KNDKGCVIATCRNPNG--ATGLLDLKNRFPERLDVLQLDL 88
LV G +RGIGL + LL N V ATCR+P G A L L ++ P L ++ L++
Sbjct: 14 LVTGGNRGIGLGLVQHLLALPNPPEWVFATCRDPKGQRAQELQKLASKHPN-LVIVPLEV 72
Query: 89 TVESTIEASAKSIKEKY-GS-LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
T ++I+A+A S+ E+ GS LNLLIN +G+L+ N L+ ET ++ Y N
Sbjct: 73 TDPASIKAAAASVGERLKGSGLNLLINNAGVLNA-NTLETETL------KDMLHVYTTNT 125
Query: 147 VGPILVIKHMSPLLKVG-----GTGIERDVAVVANLSARVGSIGDNRLGGWHS-----YR 196
+ P+L+ + PLLK G+G+ A + N+S+ GSI + L W S YR
Sbjct: 126 IAPLLLSQAFLPLLKKAAQESPGSGMSCSKAAIINMSSTAGSIKEVFL--WESAQCISYR 183
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQK 256
SKAA N LT+ S+ G ++ ++C+ LHPG V TD+ + P T + SV
Sbjct: 184 CSKAAQNMLTRCQSM--GYREHGILCVALHPGWVQTDMGKAVGDKPP----LTVDASVGG 237
Query: 257 LLNIINNIKSHDNGKFFAWDGQEIPW 282
+L +++N+ D+G F W+G + W
Sbjct: 238 MLKVLSNLSEKDSGAFLDWEGNVVAW 263
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7Z9I2 | YCP9_SCHPO | 1, ., -, ., -, ., - | 0.3169 | 0.8333 | 0.9288 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 282 | |||
| cd05325 | 233 | cd05325, carb_red_sniffer_like_SDR_c, carbonyl red | 5e-90 | |
| PRK09009 | 235 | PRK09009, PRK09009, C factor cell-cell signaling p | 4e-66 | |
| cd05324 | 225 | cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu | 3e-32 | |
| cd05374 | 248 | cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster | 6e-32 | |
| cd05233 | 234 | cd05233, SDR_c, classical (c) SDRs | 9e-31 | |
| PRK06953 | 222 | PRK06953, PRK06953, short chain dehydrogenase; Pro | 4e-30 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 2e-26 | |
| PRK08177 | 225 | PRK08177, PRK08177, short chain dehydrogenase; Pro | 3e-24 | |
| PRK08264 | 238 | PRK08264, PRK08264, short chain dehydrogenase; Val | 6e-23 | |
| cd05327 | 269 | cd05327, retinol-DH_like_SDR_c_like, retinol dehyd | 1e-21 | |
| PRK06924 | 251 | PRK06924, PRK06924, short chain dehydrogenase; Pro | 1e-20 | |
| cd05354 | 235 | cd05354, SDR_c7, classical (c) SDR, subgroup 7 | 6e-20 | |
| cd05367 | 241 | cd05367, SPR-like_SDR_c, sepiapterin reductase (SP | 2e-17 | |
| cd09805 | 281 | cd09805, type2_17beta_HSD-like_SDR_c, human 17beta | 5e-17 | |
| cd05333 | 240 | cd05333, BKR_SDR_c, beta-Keto acyl carrier protein | 1e-16 | |
| COG0300 | 265 | COG0300, DltE, Short-chain dehydrogenases of vario | 1e-16 | |
| PRK07231 | 251 | PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-16 | |
| cd05339 | 243 | cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy | 2e-16 | |
| PRK05565 | 247 | PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-16 | |
| cd05326 | 249 | cd05326, secoisolariciresinol-DH_like_SDR_c, secoi | 5e-16 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 6e-16 | |
| PRK08263 | 275 | PRK08263, PRK08263, short chain dehydrogenase; Pro | 8e-16 | |
| TIGR04316 | 250 | TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben | 1e-15 | |
| PRK12826 | 251 | PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote | 1e-15 | |
| cd05341 | 247 | cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta | 1e-15 | |
| PRK08220 | 252 | PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehy | 1e-15 | |
| PRK09072 | 263 | PRK09072, PRK09072, short chain dehydrogenase; Pro | 2e-15 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-15 | |
| cd05352 | 252 | cd05352, MDH-like_SDR_c, mannitol dehydrogenase (M | 3e-15 | |
| cd05370 | 228 | cd05370, SDR_c2, classical (c) SDR, subgroup 2 | 3e-15 | |
| PRK05557 | 248 | PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) | 7e-15 | |
| cd08932 | 223 | cd08932, HetN_like_SDR_c, HetN oxidoreductase-like | 2e-14 | |
| cd08944 | 246 | cd08944, SDR_c12, classical (c) SDR, subgroup 12 | 2e-14 | |
| cd05362 | 243 | cd05362, THN_reductase-like_SDR_c, tetrahydroxynap | 8e-14 | |
| PLN02253 | 280 | PLN02253, PLN02253, xanthoxin dehydrogenase | 2e-13 | |
| cd08943 | 250 | cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate al | 3e-13 | |
| PRK07023 | 243 | PRK07023, PRK07023, short chain dehydrogenase; Pro | 3e-13 | |
| cd05347 | 248 | cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena | 3e-13 | |
| cd05345 | 248 | cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl | 5e-13 | |
| cd08939 | 239 | cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine | 6e-13 | |
| COG4221 | 246 | COG4221, COG4221, Short-chain alcohol dehydrogenas | 6e-13 | |
| cd05359 | 242 | cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_c | 6e-13 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 8e-13 | |
| PRK06914 | 280 | PRK06914, PRK06914, short chain dehydrogenase; Pro | 8e-13 | |
| cd08929 | 226 | cd08929, SDR_c4, classical (c) SDR, subgroup 4 | 1e-12 | |
| cd08941 | 290 | cd08941, 3KS_SDR_c, 3-keto steroid reductase, clas | 1e-12 | |
| PRK06172 | 253 | PRK06172, PRK06172, short chain dehydrogenase; Pro | 1e-12 | |
| cd05323 | 244 | cd05323, ADH_SDR_c_like, insect type alcohol dehyd | 2e-12 | |
| cd05332 | 257 | cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste | 5e-12 | |
| PRK12829 | 264 | PRK12829, PRK12829, short chain dehydrogenase; Pro | 9e-12 | |
| PRK08219 | 227 | PRK08219, PRK08219, short chain dehydrogenase; Pro | 1e-11 | |
| cd05331 | 244 | cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydroz | 1e-11 | |
| PRK06483 | 236 | PRK06483, PRK06483, dihydromonapterin reductase; P | 1e-11 | |
| cd05368 | 241 | cd05368, DHRS6_like_SDR_c, human DHRS6-like, class | 2e-11 | |
| PRK07326 | 237 | PRK07326, PRK07326, short chain dehydrogenase; Pro | 2e-11 | |
| PRK09730 | 247 | PRK09730, PRK09730, putative NAD(P)-binding oxidor | 2e-11 | |
| PRK07060 | 245 | PRK07060, PRK07060, short chain dehydrogenase; Pro | 3e-11 | |
| PRK06123 | 248 | PRK06123, PRK06123, short chain dehydrogenase; Pro | 3e-11 | |
| COG3967 | 245 | COG3967, DltE, Short-chain dehydrogenase involved | 3e-11 | |
| PRK08063 | 250 | PRK08063, PRK08063, enoyl-(acyl carrier protein) r | 5e-11 | |
| cd05329 | 251 | cd05329, TR_SDR_c, tropinone reductase-I and II (T | 5e-11 | |
| PRK12828 | 239 | PRK12828, PRK12828, short chain dehydrogenase; Pro | 1e-10 | |
| PRK09242 | 257 | PRK09242, PRK09242, tropinone reductase; Provision | 1e-10 | |
| cd05343 | 250 | cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, c | 1e-10 | |
| PRK07069 | 251 | PRK07069, PRK07069, short chain dehydrogenase; Val | 1e-10 | |
| TIGR01830 | 239 | TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier | 1e-10 | |
| cd05371 | 252 | cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr | 1e-10 | |
| PRK12429 | 258 | PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenas | 2e-10 | |
| PRK08324 | 681 | PRK08324, PRK08324, short chain dehydrogenase; Val | 2e-10 | |
| PRK12825 | 249 | PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-10 | |
| PRK06398 | 258 | PRK06398, PRK06398, aldose dehydrogenase; Validate | 3e-10 | |
| cd08942 | 250 | cd08942, RhlG_SDR_c, RhlG and related beta-ketoacy | 3e-10 | |
| PRK06463 | 255 | PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-10 | |
| cd05351 | 244 | cd05351, XR_like_SDR_c, xylulose reductase-like, c | 3e-10 | |
| PRK07666 | 239 | PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) | 4e-10 | |
| PRK06197 | 306 | PRK06197, PRK06197, short chain dehydrogenase; Pro | 1e-09 | |
| PRK06841 | 255 | PRK06841, PRK06841, short chain dehydrogenase; Pro | 1e-09 | |
| cd05338 | 246 | cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogena | 1e-09 | |
| PRK06550 | 235 | PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-09 | |
| PRK06171 | 266 | PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydro | 2e-09 | |
| cd08934 | 243 | cd08934, CAD_SDR_c, clavulanic acid dehydrogenase | 2e-09 | |
| cd05346 | 249 | cd05346, SDR_c5, classical (c) SDR, subgroup 5 | 3e-09 | |
| pfam13561 | 239 | pfam13561, adh_short_C2, Enoyl-(Acyl carrier prote | 3e-09 | |
| PRK07577 | 234 | PRK07577, PRK07577, short chain dehydrogenase; Pro | 5e-09 | |
| cd05357 | 234 | cd05357, PR_SDR_c, pteridine reductase (PR), class | 6e-09 | |
| pfam00106 | 167 | pfam00106, adh_short, short chain dehydrogenase | 8e-09 | |
| PRK06482 | 276 | PRK06482, PRK06482, short chain dehydrogenase; Pro | 9e-09 | |
| cd05363 | 254 | cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), | 1e-08 | |
| PRK06180 | 277 | PRK06180, PRK06180, short chain dehydrogenase; Pro | 1e-08 | |
| PRK07067 | 257 | PRK07067, PRK07067, sorbitol dehydrogenase; Provis | 1e-08 | |
| PRK08265 | 261 | PRK08265, PRK08265, short chain dehydrogenase; Pro | 2e-08 | |
| PRK06138 | 252 | PRK06138, PRK06138, short chain dehydrogenase; Pro | 2e-08 | |
| PRK12824 | 245 | PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro | 3e-08 | |
| cd08940 | 258 | cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydroge | 4e-08 | |
| PRK12939 | 250 | PRK12939, PRK12939, short chain dehydrogenase; Pro | 4e-08 | |
| cd05358 | 253 | cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (Glc | 4e-08 | |
| cd05360 | 233 | cd05360, SDR_c3, classical (c) SDR, subgroup 3 | 4e-08 | |
| PRK08226 | 263 | PRK08226, PRK08226, short chain dehydrogenase; Pro | 5e-08 | |
| TIGR01963 | 255 | TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | 6e-08 | |
| PRK08589 | 272 | PRK08589, PRK08589, short chain dehydrogenase; Val | 8e-08 | |
| cd09806 | 258 | cd09806, type1_17beta-HSD-like_SDR_c, human estrog | 8e-08 | |
| PRK12827 | 249 | PRK12827, PRK12827, short chain dehydrogenase; Pro | 9e-08 | |
| PRK07478 | 254 | PRK07478, PRK07478, short chain dehydrogenase; Pro | 9e-08 | |
| cd05344 | 253 | cd05344, BKR_like_SDR_like, putative beta-ketoacyl | 1e-07 | |
| PRK07097 | 265 | PRK07097, PRK07097, gluconate 5-dehydrogenase; Pro | 1e-07 | |
| PRK06949 | 258 | PRK06949, PRK06949, short chain dehydrogenase; Pro | 3e-07 | |
| cd11730 | 206 | cd11730, Tthb094_like_SDR_c, Tthb094 and related p | 4e-07 | |
| PRK05854 | 313 | PRK05854, PRK05854, short chain dehydrogenase; Pro | 4e-07 | |
| cd05366 | 257 | cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol | 4e-07 | |
| TIGR02632 | 676 | TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate | 4e-07 | |
| cd05364 | 253 | cd05364, SDR_c11, classical (c) SDR, subgroup 11 | 4e-07 | |
| PRK06113 | 255 | PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydro | 4e-07 | |
| PRK12747 | 252 | PRK12747, PRK12747, short chain dehydrogenase; Pro | 4e-07 | |
| PRK06947 | 248 | PRK06947, PRK06947, glucose-1-dehydrogenase; Provi | 4e-07 | |
| cd08933 | 261 | cd08933, RDH_SDR_c, retinal dehydrogenase-like, cl | 6e-07 | |
| PRK06114 | 254 | PRK06114, PRK06114, short chain dehydrogenase; Pro | 6e-07 | |
| cd08937 | 256 | cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa | 6e-07 | |
| cd08930 | 250 | cd08930, SDR_c8, classical (c) SDR, subgroup 8 | 6e-07 | |
| PRK07856 | 252 | PRK07856, PRK07856, short chain dehydrogenase; Pro | 7e-07 | |
| cd08935 | 271 | cd08935, mannonate_red_SDR_c, putative D-mannonate | 7e-07 | |
| PRK07035 | 252 | PRK07035, PRK07035, short chain dehydrogenase; Pro | 7e-07 | |
| PRK06124 | 256 | PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro | 8e-07 | |
| TIGR01500 | 256 | TIGR01500, sepiapter_red, sepiapterin reductase | 8e-07 | |
| PRK06500 | 249 | PRK06500, PRK06500, short chain dehydrogenase; Pro | 1e-06 | |
| PRK06179 | 270 | PRK06179, PRK06179, short chain dehydrogenase; Pro | 1e-06 | |
| PRK06196 | 315 | PRK06196, PRK06196, oxidoreductase; Provisional | 1e-06 | |
| cd05337 | 255 | cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl | 1e-06 | |
| cd09807 | 274 | cd09807, retinol-DH_like_SDR_c, retinol dehydrogen | 1e-06 | |
| cd05350 | 239 | cd05350, SDR_c6, classical (c) SDR, subgroup 6 | 2e-06 | |
| PRK06198 | 260 | PRK06198, PRK06198, short chain dehydrogenase; Pro | 2e-06 | |
| PRK06057 | 255 | PRK06057, PRK06057, short chain dehydrogenase; Pro | 2e-06 | |
| cd05356 | 239 | cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxyst | 7e-06 | |
| cd09761 | 242 | cd09761, A3DFK9-like_SDR_c, Clostridium thermocell | 8e-06 | |
| PRK07806 | 248 | PRK07806, PRK07806, short chain dehydrogenase; Pro | 9e-06 | |
| PRK07825 | 273 | PRK07825, PRK07825, short chain dehydrogenase; Pro | 1e-05 | |
| PRK06181 | 263 | PRK06181, PRK06181, short chain dehydrogenase; Pro | 1e-05 | |
| cd05365 | 242 | cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi | 1e-05 | |
| PRK12748 | 256 | PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-prote | 2e-05 | |
| PRK07062 | 265 | PRK07062, PRK07062, short chain dehydrogenase; Pro | 2e-05 | |
| cd05369 | 249 | cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reducta | 2e-05 | |
| cd08953 | 436 | cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup | 2e-05 | |
| PRK08217 | 253 | PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-05 | |
| cd08931 | 227 | cd08931, SDR_c9, classical (c) SDR, subgroup 9 | 2e-05 | |
| PRK13394 | 262 | PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenas | 2e-05 | |
| PRK08628 | 258 | PRK08628, PRK08628, short chain dehydrogenase; Pro | 2e-05 | |
| PRK08213 | 259 | PRK08213, PRK08213, gluconate 5-dehydrogenase; Pro | 2e-05 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 3e-05 | |
| PRK12746 | 254 | PRK12746, PRK12746, short chain dehydrogenase; Pro | 4e-05 | |
| PRK07454 | 241 | PRK07454, PRK07454, short chain dehydrogenase; Pro | 4e-05 | |
| cd05349 | 246 | cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl | 4e-05 | |
| PRK12745 | 256 | PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-prote | 5e-05 | |
| cd09809 | 284 | cd09809, human_WWOX_like_SDR_c-like, human WWOX (W | 5e-05 | |
| cd09763 | 265 | cd09763, DHRS1-like_SDR_c, human dehydrogenase/red | 5e-05 | |
| PRK05693 | 274 | PRK05693, PRK05693, short chain dehydrogenase; Pro | 6e-05 | |
| TIGR01829 | 242 | TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reducta | 6e-05 | |
| PRK07774 | 250 | PRK07774, PRK07774, short chain dehydrogenase; Pro | 7e-05 | |
| PRK05717 | 255 | PRK05717, PRK05717, oxidoreductase; Validated | 7e-05 | |
| PRK07074 | 257 | PRK07074, PRK07074, short chain dehydrogenase; Pro | 9e-05 | |
| cd09808 | 255 | cd09808, DHRS-12_like_SDR_c-like, human dehydrogen | 9e-05 | |
| PRK06523 | 260 | PRK06523, PRK06523, short chain dehydrogenase; Pro | 1e-04 | |
| PRK08267 | 260 | PRK08267, PRK08267, short chain dehydrogenase; Pro | 1e-04 | |
| PRK09186 | 256 | PRK09186, PRK09186, flagellin modification protein | 1e-04 | |
| PRK06182 | 273 | PRK06182, PRK06182, short chain dehydrogenase; Val | 2e-04 | |
| PRK08277 | 278 | PRK08277, PRK08277, D-mannonate oxidoreductase; Pr | 2e-04 | |
| PRK05872 | 296 | PRK05872, PRK05872, short chain dehydrogenase; Pro | 3e-04 | |
| PRK09135 | 249 | PRK09135, PRK09135, pteridine reductase; Provision | 3e-04 | |
| PRK05993 | 277 | PRK05993, PRK05993, short chain dehydrogenase; Pro | 3e-04 | |
| cd05330 | 257 | cd05330, cyclohexanol_reductase_SDR_c, cyclohexano | 3e-04 | |
| TIGR01832 | 248 | TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogena | 4e-04 | |
| cd05348 | 257 | cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydro | 4e-04 | |
| PRK08703 | 239 | PRK08703, PRK08703, short chain dehydrogenase; Pro | 4e-04 | |
| cd05334 | 221 | cd05334, DHPR_SDR_c_like, dihydropteridine reducta | 4e-04 | |
| PRK06077 | 252 | PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) | 5e-04 | |
| PRK06194 | 287 | PRK06194, PRK06194, hypothetical protein; Provisio | 6e-04 | |
| PRK05867 | 253 | PRK05867, PRK05867, short chain dehydrogenase; Pro | 7e-04 | |
| cd05340 | 236 | cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-li | 8e-04 | |
| PRK06125 | 259 | PRK06125, PRK06125, short chain dehydrogenase; Pro | 8e-04 | |
| PRK07063 | 260 | PRK07063, PRK07063, short chain dehydrogenase; Pro | 9e-04 | |
| PRK06101 | 240 | PRK06101, PRK06101, short chain dehydrogenase; Pro | 0.001 | |
| TIGR02415 | 254 | TIGR02415, 23BDH, acetoin reductases | 0.001 | |
| PRK07523 | 255 | PRK07523, PRK07523, gluconate 5-dehydrogenase; Pro | 0.001 | |
| PRK05866 | 293 | PRK05866, PRK05866, short chain dehydrogenase; Pro | 0.002 | |
| PRK06200 | 263 | PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydropheny | 0.002 | |
| cd05373 | 238 | cd05373, SDR_c10, classical (c) SDR, subgroup 10 | 0.002 | |
| cd09810 | 311 | cd09810, LPOR_like_SDR_c_like, light-dependent pro | 0.002 | |
| PRK12937 | 245 | PRK12937, PRK12937, short chain dehydrogenase; Pro | 0.002 | |
| TIGR01289 | 314 | TIGR01289, LPOR, light-dependent protochlorophylli | 0.002 | |
| cd08945 | 258 | cd08945, PKR_SDR_c, Polyketide ketoreductase, clas | 0.002 | |
| PRK05650 | 270 | PRK05650, PRK05650, short chain dehydrogenase; Pro | 0.002 | |
| TIGR01831 | 239 | TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-prote | 0.003 | |
| cd08951 | 260 | cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 | 0.004 | |
| cd05372 | 250 | cd05372, ENR_SDR, Enoyl acyl carrier protein (ACP) | 0.004 |
| >gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 266 bits (683), Expect = 5e-90
Identities = 113/253 (44%), Positives = 153/253 (60%), Gaps = 23/253 (9%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
L+ GASRGIGLE +QLL VIATCR+P+ AT L L RL +L+LD+T
Sbjct: 2 LITGASRGIGLELVRQLLA-RGNNTVIATCRDPSAATELAALGASHS-RLHILELDVT-- 57
Query: 92 STIEASAKSIKEKYGS--LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
I SA+++ E+ G L++LIN +GIL ++V+ L+ ++VN +GP
Sbjct: 58 DEIAESAEAVAERLGDAGLDVLINNAGILH------SYGPASEVDSEDLLEVFQVNVLGP 111
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
+L+ + PLL G A + N+S+RVGSIGDN GGW+SYRASKAALN LTKS+
Sbjct: 112 LLLTQAFLPLLLKGAR------AKIINISSRVGSIGDNTSGGWYSYRASKAALNMLTKSL 165
Query: 210 SVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIKSHDN 269
+VE K+D + + LHPG V TD+ PF +N T E SV LL +I+N+ D+
Sbjct: 166 AVEL--KRDGITVVSLHPGWVRTDMGGPFAKN---KGPITPEESVAGLLKVIDNLNEEDS 220
Query: 270 GKFFAWDGQEIPW 282
GKF +DG EIPW
Sbjct: 221 GKFLDYDGTEIPW 233
|
Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233 |
| >gnl|CDD|181609 PRK09009, PRK09009, C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 4e-66
Identities = 102/253 (40%), Positives = 143/253 (56%), Gaps = 23/253 (9%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRN--PNGATGLLDLKNRFPERLDVLQLDLT 89
L+ G S GIG KQLLE+ V AT R+ P+ + + LD+T
Sbjct: 4 LIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPDFQH----------DNVQWHALDVT 53
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
E+ I K + E++ L+ LIN G+L + PE +L ++ + +N +
Sbjct: 54 DEAEI----KQLSEQFTQLDWLINCVGMLHTQD-KGPEKSLQALDADFFLQNITLNTLPS 108
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
+L+ KH +P LK + A A +SA+VGSI DNRLGGW+SYRASKAALN K++
Sbjct: 109 LLLAKHFTPKLKQS------ESAKFAVISAKVGSISDNRLGGWYSYRASKAALNMFLKTL 162
Query: 210 SVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIKSHDN 269
S+E+ R + + LHPGT DT LS+PFQ+NVP+GKLFT E+ Q LL II N +
Sbjct: 163 SIEWQRSLKHGVVLALHPGTTDTALSKPFQQNVPKGKLFTPEYVAQCLLGIIANATPAQS 222
Query: 270 GKFFAWDGQEIPW 282
G F A+DG+ +PW
Sbjct: 223 GSFLAYDGETLPW 235
|
Length = 235 |
| >gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-32
Identities = 78/256 (30%), Positives = 119/256 (46%), Gaps = 35/256 (13%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDV--LQLD 87
V+LV GA+RGIG E +QL + G VI T R+ G ++ E L V QLD
Sbjct: 2 VALVTGANRGIGFEIVRQLAKSGP-GTVILTARDVE--RGQAAVEKLRAEGLSVRFHQLD 58
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
+T +++IEA+A ++EKYG L++L+N +GI + T + ++ + N
Sbjct: 59 VTDDASIEAAADFVEEKYGGLDILVNNAGI-AFKGFDDSTPTREQARET-----MKTNFF 112
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
G + V + + PLLK + + N+S+ +GS+ +Y SKAALN LT+
Sbjct: 113 GTVDVTQALLPLLK------KSPAGRIVNVSSGLGSL-------TSAYGVSKAALNALTR 159
Query: 208 SVSVEFGRKKDPVICILLHPGTVDTDLSRPF-QRNVPEGKLFTKEFSVQKLLNIINNIKS 266
++ E V PG V TD+ + EG E V L +
Sbjct: 160 ILAKELKETGIKVNAC--CPGWVKTDMGGGKAPKTPEEG----AETPVYLALLPPDGEP- 212
Query: 267 HDNGKFFAWDGQEIPW 282
GKFF D + +PW
Sbjct: 213 --TGKFF-SDKKVVPW 225
|
PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225 |
| >gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 6e-32
Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 29/216 (13%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
L+ G S GIGL A L + + VIAT RNP L L + L+VL+LD+T E
Sbjct: 4 LITGCSSGIGLALALALAAQGYR--VIATARNP---DKLESLGELLNDNLEVLELDVTDE 58
Query: 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPIL 151
+I+A+ K + E++G +++L+N +G + ET++ +V + +EVN GP+
Sbjct: 59 ESIKAAVKEVIERFGRIDVLVNNAGYGLFGPLE--ETSIEEVREL-----FEVNVFGPLR 111
Query: 152 VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSV 211
V + PL+ ++ + N+S+ G + LG Y ASKAAL L++S+ +
Sbjct: 112 VTRAFLPLM------RKQGSGRIVNVSSVAGLVPTPFLG---PYCASKAALEALSESLRL 162
Query: 212 E---FGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
E FG + ++ PG V T + + E
Sbjct: 163 ELAPFG-----IKVTIIEPGPVRTGFADNAAGSALE 193
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 9e-31
Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 21/207 (10%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
LV GAS GIG A++L + K V+ RN L ++ +Q D++ E
Sbjct: 2 LVTGASSGIGRAIARRLAREGAK--VVLADRNEEALAELAAIE-ALGGNAVAVQADVSDE 58
Query: 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPIL 151
+EA + E++G L++L+N +GI + E T ++ +VN G L
Sbjct: 59 EDVEALVEEALEEFGRLDILVNNAGIARPGPLE--ELTDEDWDR-----VLDVNLTGVFL 111
Query: 152 VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSV 211
+ + P +K G G + N+S+ G L G +Y ASKAAL LT+S+++
Sbjct: 112 LTRAALPHMKKQGGG------RIVNISSVAGLRP---LPGQAAYAASKAALEGLTRSLAL 162
Query: 212 EFGRKKDPVICILLHPGTVDTDLSRPF 238
E V + PG VDT +
Sbjct: 163 ELAPYGIRVNAV--APGLVDTPMLAKL 187
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234 |
| >gnl|CDD|180774 PRK06953, PRK06953, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-30
Identities = 76/253 (30%), Positives = 113/253 (44%), Gaps = 37/253 (14%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
L+ GASRGIG EF +Q + VIAT R+ L L L LD+
Sbjct: 5 LIVGASRGIGREFVRQYRADGWR--VIATARDAAALAALQALGAE------ALALDVADP 56
Query: 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPET-TLNKVEKSSLMLAYEVNAVGPI 150
+++ A + + +L+ + +G V P T + + + N +GP+
Sbjct: 57 ASVAGLAWKLDGE--ALDAAVYVAG------VYGPRTEGVEPITREDFDAVMHTNVLGPM 108
Query: 151 LVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD-NRLGGWHSYRASKAALNQLTKSV 209
++ + PL++ G V+A LS+R+GSIGD GW YRASKAALN ++
Sbjct: 109 QLLPILLPLVEAAG-------GVLAVLSSRMGSIGDATGTTGW-LYRASKAALNDALRAA 160
Query: 210 SVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIKSHDN 269
S++ CI LHPG V TD+ SV + +I DN
Sbjct: 161 SLQARH----ATCIALHPGWVRTDMGGA-------QAALDPAQSVAGMRRVIAQATRRDN 209
Query: 270 GKFFAWDGQEIPW 282
G+FF +DG E+ W
Sbjct: 210 GRFFQYDGVELSW 222
|
Length = 222 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-26
Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 22/222 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD-LKNRFPERLDVLQ 85
G V+LV GAS GIG A+ L + + V A A L +K R +
Sbjct: 4 SGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVA 63
Query: 86 LDLT-VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
D++ E ++EA + +E++G +++L+N +GI P+ L ++ + +V
Sbjct: 64 ADVSDDEESVEALVAAAEEEFGRIDILVNNAGI------AGPDAPLEELTEEDWDRVIDV 117
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N +G L+ + PL+K + N+S+ G G G +Y ASKAAL
Sbjct: 118 NLLGAFLLTRAALPLMKKQ---------RIVNISSVAGLGG---PPGQAAYAASKAALIG 165
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGK 246
LTK++++E + + + PG +DT ++ + E
Sbjct: 166 LTKALALELAPRG--IRVNAVAPGYIDTPMTAALESAELEAL 205
|
Length = 251 |
| >gnl|CDD|236173 PRK08177, PRK08177, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 3e-24
Identities = 71/254 (27%), Positives = 108/254 (42%), Gaps = 36/254 (14%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
L+ GASRG+GL +LLE V AT R P T L L E+LD+
Sbjct: 5 LIIGASRGLGLGLVDRLLE--RGWQVTATVRGPQQDTALQALPGVHIEKLDMND------ 56
Query: 92 STIEASAKSIKEKYGS--LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
AS + ++ +LL +GI + Q E L L NA+ P
Sbjct: 57 ---PASLDQLLQRLQGQRFDLLFVNAGISGPAH--QSAADATAAEIGQLFLT---NAIAP 108
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
I + + + + V+A +S+++GS+ G Y+ASKAALN +T+S
Sbjct: 109 IRLARRLLGQ-------VRPGQGVLAFMSSQLGSVELPDGGEMPLYKASKAALNSMTRSF 161
Query: 210 SVEFGRKKDPVICIL-LHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIKSHD 268
E G +P + +L +HPG V TD+ + E SV+ L+ I
Sbjct: 162 VAELG---EPTLTVLSMHPGWVKTDMG-------GDNAPLDVETSVKGLVEQIEAASGKG 211
Query: 269 NGKFFAWDGQEIPW 282
+F + G+ +PW
Sbjct: 212 GHRFIDYQGETLPW 225
|
Length = 225 |
| >gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 6e-23
Identities = 66/210 (31%), Positives = 100/210 (47%), Gaps = 29/210 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
KG V LV GA+RGIG F +QLL + V A R+P T R+ LQL
Sbjct: 5 KGKVVLVTGANRGIGRAFVEQLLAR-GAAKVYAAARDPESVTD-------LGPRVVPLQL 56
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T +++ A+A E + +L+N +GI ++L +L E N
Sbjct: 57 DVTDPASVAAAA----EAASDVTILVNNAGIFRTGSLLLEGDE------DALRAEMETNY 106
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
GP+ + + +P+L G G A+V LS V S + G +Y ASKAA LT
Sbjct: 107 FGPLAMARAFAPVLAANGGG-----AIVNVLS--VLSWVNFPNLG--TYSASKAAAWSLT 157
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
+++ E + V+ +HPG +DTD++
Sbjct: 158 QALRAELAPQGTRVLG--VHPGPIDTDMAA 185
|
Length = 238 |
| >gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 1e-21
Identities = 70/268 (26%), Positives = 117/268 (43%), Gaps = 33/268 (12%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NGATGLLDLKNRFP-ERLDVLQ 85
G V ++ GA+ GIG E A++L ++ VI CRN G ++K +++V+Q
Sbjct: 1 GKVVVITGANSGIGKETARELAKRGAH--VIIACRNEEKGEEAAAEIKKETGNAKVEVIQ 58
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
LDL+ +++ A+ ++ L++LIN +GI++ P T + E L A VN
Sbjct: 59 LDLSSLASVRQFAEEFLARFPRLDILINNAGIMAPPR----RLTKDGFE---LQFA--VN 109
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN--------RLGGWHSYRA 197
+G L+ + P+LK R + V++++ R G I N + +Y
Sbjct: 110 YLGHFLLTNLLLPVLKASAPS--R-IVNVSSIAHRAGPIDFNDLDLENNKEYSPYKAYGQ 166
Query: 198 SKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR---PFQRNVPEGKLFTK---E 251
SK A T+ ++ + V LHPG V T+L R F + F K E
Sbjct: 167 SKLANILFTRELARRL--EGTGVTVNALHPGVVRTELLRRNGSFFLLYKLLRPFLKKSPE 224
Query: 252 FSVQKLLNII-NNIKSHDNGKFFAWDGQ 278
Q L + +GK+F+
Sbjct: 225 QGAQTALYAATSPELEGVSGKYFSDCKI 252
|
Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269 |
| >gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 1e-20
Identities = 68/253 (26%), Positives = 109/253 (43%), Gaps = 44/253 (17%)
Query: 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT- 89
++ G S+G+G A QLLEK VI+ R N L L ++ L LDL
Sbjct: 4 VIITGTSQGLGEAIANQLLEKGTH--VISISRTEN--KELTKLAEQYNSNLTFHSLDLQD 59
Query: 90 ---VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
+E+ SI+E S LIN +G+++ P + K E L+ +N
Sbjct: 60 VHELETNFNEILSSIQEDNVSSIHLINNAGMVA------PIKPIEKAESEELITNVHLNL 113
Query: 147 VGPILVI----KHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
+ P+++ KH KV V N+S+ G+ N GW +Y +SKA L
Sbjct: 114 LAPMILTSTFMKHTKDW-KVDKR--------VINISS--GA-AKNPYFGWSAYCSSKAGL 161
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--------------FQRNVPEGKLF 248
+ T++V+ E ++ PV + PG +DT++ F EGKL
Sbjct: 162 DMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTNLDRFITLKEEGKLL 221
Query: 249 TKEFSVQKLLNII 261
+ E+ + L N++
Sbjct: 222 SPEYVAKALRNLL 234
|
Length = 251 |
| >gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7 | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 6e-20
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 25/209 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
K LV GA+RGIG F + LL K V A R+P A L ++ +++ L+L
Sbjct: 2 KDKTVLVTGANRGIGKAFVESLLAHGAKK-VYAAVRDPGSAA---HLVAKYGDKVVPLRL 57
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T +I+A+A K+ ++++IN +G+L +L+ +L +VN
Sbjct: 58 DVTDPESIKAAAAQAKD----VDVVINNAGVLKPATLLEEGAL------EALKQEMDVNV 107
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G + + + +P+LK G G A+V S V S+ + +Y ASK+A LT
Sbjct: 108 FGLLRLAQAFAPVLKANGGG-----AIVNLNS--VASLKN--FPAMGTYSASKSAAYSLT 158
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLS 235
+ + E + V+ +HPG +DT ++
Sbjct: 159 QGLRAELAAQGTLVLS--VHPGPIDTRMA 185
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235 |
| >gnl|CDD|187625 cd05367, SPR-like_SDR_c, sepiapterin reductase (SPR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 64/262 (24%), Positives = 117/262 (44%), Gaps = 43/262 (16%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN--RFPERLDVLQLDLT 89
++ GASRGIG A++LL++ V+ R+ L +LK R R+ ++ DL+
Sbjct: 3 ILTGASRGIGRALAEELLKRGSPSVVVLLARS---EEPLQELKEELRPGLRVTTVKADLS 59
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSS---LMLAYEVNA 146
+ +E ++I++ G +LLIN +G L ++K+E L +++N
Sbjct: 60 DAAGVEQLLEAIRKLDGERDLLINNAGSL---------GPVSKIEFIDLDELQKYFDLNL 110
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
P+ + + K G+++ V V++ +A N GW Y +SKAA +
Sbjct: 111 TSPVCLTSTLLRAFK--KRGLKKTVVNVSSGAAV------NPFKGWGLYCSSKAARDMFF 162
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE-------------GKLFTKEFS 253
+ ++ E + V + PG VDTD+ R + + G+L E S
Sbjct: 163 RVLAAE----EPDVRVLSYAPGVVDTDMQREIRETSADPETRSRFRSLKEKGELLDPEQS 218
Query: 254 VQKLLNIINNIKSHDNGKFFAW 275
+KL N++ K ++G +
Sbjct: 219 AEKLANLLEKDKF-ESGAHVDY 239
|
Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 241 |
| >gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 5e-17
Identities = 66/214 (30%), Positives = 91/214 (42%), Gaps = 35/214 (16%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKG-CVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV 90
L+ G G G AK+L + G V+A C NG G +L+ +RL LQLD+T
Sbjct: 4 LITGCDSGFGNLLAKKL---DSLGFTVLAGCLTKNGP-GAKELRRVCSDRLRTLQLDVTK 59
Query: 91 ESTIEASAKSIKEKYGSLNL--LINASGILSIPNV--LQPETTLNKVEKSSLMLAYEVNA 146
I+ +A+ +KE G L L+N +GIL L P K EVN
Sbjct: 60 PEQIKRAAQWVKEHVGEKGLWGLVNNAGILGFGGDEELLPMDDYRKC--------MEVNL 111
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G + V K PLL+ R V N+S+ G + G Y ASKAA+ +
Sbjct: 112 FGTVEVTKAFLPLLR-------RAKGRVVNVSSMGGRVPFPAGGA---YCASKAAVEAFS 161
Query: 207 KSVSVE---FGRKKDPVICILLHPGTVDTDLSRP 237
S+ E +G K V I PG T ++
Sbjct: 162 DSLRRELQPWGVK---VSII--EPGNFKTGITGN 190
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 281 |
| >gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-16
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
V+LV GASRGIG A +L + K V T R+ A ++ L+ D++
Sbjct: 2 VALVTGASRGIGRAIALRLAAEGAK--VAVTDRSEEAAAETVEEIKALGGNAAALEADVS 59
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
+EA + ++ ++G +++L+N +GI + L ++ + VN G
Sbjct: 60 DREAVEALVEKVEAEFGPVDILVNNAGITR-------DNLLMRMSEEDWDAVINVNLTGV 112
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
V + + + I+R + N+S+ VG IG N G +Y ASKA + TKS+
Sbjct: 113 FNVTQAVIRAM------IKRRSGRIINISSVVGLIG-NP--GQANYAASKAGVIGFTKSL 163
Query: 210 SVEFGRKKDPVICILLHPGTVDTDLSR 236
+ E + V + PG +DTD++
Sbjct: 164 AKELASRGITVNAVA--PGFIDTDMTD 188
|
This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240 |
| >gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 1e-16
Identities = 51/209 (24%), Positives = 97/209 (46%), Gaps = 23/209 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL-DLKNRFPERLDVLQ 85
KG +L+ GAS GIG E AKQL + +I R + L +L+++ ++V+
Sbjct: 5 KGKTALITGASSGIGAELAKQLARRGYN--LILVARREDKLEALAKELEDKTGVEVEVIP 62
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
DL+ +E +KE+ G +++L+N +G + L E +L++ E+ M+ ++N
Sbjct: 63 ADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFL--ELSLDEEEE---MI--QLN 115
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHS-YRASKAALNQ 204
+ + K + P + G G ++ N +GS + + Y A+KA +
Sbjct: 116 ILALTRLTKAVLPGMVERGAG-----HII-N----IGSAAGLIPTPYMAVYSATKAFVLS 165
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTD 233
++++ E K V + PG T+
Sbjct: 166 FSEALREEL--KGTGVKVTAVCPGPTRTE 192
|
Length = 265 |
| >gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 2e-16
Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 20/211 (9%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
G V++V GAS GIG A++ + + V+ T RN A + R + D
Sbjct: 5 GKVAIVTGASSGIGEGIARRFAAEGAR--VVVTDRNEEAAERVAAEI-LAGGRAIAVAAD 61
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
++ E+ +EA+ + E++GS+++L+N +G L + + ++ + VN
Sbjct: 62 VSDEADVEAAVAAALERFGSVDILVNNAGTTHRNGPL-LDVDEAEFDR-----IFAVNVK 115
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
P L + P ++ G G +VA A L R G GW Y ASK A+ LTK
Sbjct: 116 SPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPRPG-------LGW--YNASKGAVITLTK 166
Query: 208 SVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
+++ E G K V + P V+T L F
Sbjct: 167 ALAAELGPDKIRVNAV--APVVVETGLLEAF 195
|
Length = 251 |
| >gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-16
Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 19/206 (9%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
+ L+ G GIG A + ++ K VI N GA + + ++ + D++
Sbjct: 1 IVLITGGGSGIGRLLALEFAKRGAK-VVILD-INEKGAEETANNVRKAGGKVHYYKCDVS 58
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
+ +AK IK++ G + +LIN +G++S +L E ++EK+ +EVN +
Sbjct: 59 KREEVYEAAKKIKKEVGDVTILINNAGVVSGKKLL--ELPDEEIEKT-----FEVNTLAH 111
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
K P + +ER+ + +++ G I L Y ASKAA +S+
Sbjct: 112 FWTTKAFLPDM------LERNHGHIVTIASVAGLISPAGLA---DYCASKAAAVGFHESL 162
Query: 210 SVEFGRKKDPVI-CILLHPGTVDTDL 234
+E P I L+ P ++T +
Sbjct: 163 RLELKAYGKPGIKTTLVCPYFINTGM 188
|
17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243 |
| >gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 2e-16
Identities = 53/210 (25%), Positives = 98/210 (46%), Gaps = 25/210 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVL 84
G V++V GAS GIG A+ L ++ G VIA N A LL+ +
Sbjct: 4 MGKVAIVTGASGGIGRAIAELLAKE---GAKVVIAYDINEEAAQELLEEIKEEGGDAIAV 60
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
+ D++ E +E + I EK+G +++L+N +GI + L + T + ++ ++ V
Sbjct: 61 KADVSSEEDVENLVEQIVEKFGKIDILVNNAGISNF--GLVTDMTDEEWDR---VID--V 113
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVV-ANLSARVGSIGDNRLGGWHSYRASKAALN 203
N G +L+ ++ P + +G+ +++ + + A + Y ASK A+N
Sbjct: 114 NLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGASCEVL----------YSASKGAVN 163
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
TK+++ E V + PG +DT+
Sbjct: 164 AFTKALAKELAPSGIRVNAV--APGAIDTE 191
|
Length = 247 |
| >gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 5e-16
Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 26/215 (12%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG---ATGLLDLKNRFPERL 81
+ G V+++ G + GIG A+ L K+ VIA + G A L D F
Sbjct: 1 RLDGKVAIITGGASGIGEATAR-LFAKHGARVVIADIDDDAGQAVAAELGDPDISF---- 55
Query: 82 DVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLA 141
+ D+TVE+ + A+ + ++G L+++ N +G+L P ET+L + E+
Sbjct: 56 --VHCDVTVEADVRAAVDTAVARFGRLDIMFNNAGVLGAPCYSILETSLEEFERV----- 108
Query: 142 YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
+VN G L KH + ++ G VA VA + +G H+Y ASK A
Sbjct: 109 LDVNVYGAFLGTKHAARVMIPAKKGSIVSVASVAGVVGGLGP---------HAYTASKHA 159
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
+ LT+S + E G V C+ P V T L
Sbjct: 160 VLGLTRSAATELGEHGIRVNCVS--PYGVATPLLT 192
|
Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 6e-16
Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 23/221 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
+ V LV GA+ GIG ++ D+ V+ RN A D L +
Sbjct: 4 QSRVVLVTGAAGGIGRAACQRFARAGDQ--VVVADRNVERARERAD---SLGPDHHALAM 58
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D++ E+ I + + ++G +++L+N +G+ +TTL + + +N
Sbjct: 59 DVSDEAQIREGFEQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFAR-----LQAINL 113
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G LV + L+ G G A + N+++ G + L +Y ASKAA+ LT
Sbjct: 114 TGAYLVAREALRLMIEQGHG-----AAIVNVASGAGLVA---LPKRTAYSASKAAVISLT 165
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL 247
+S++ E+ K V +L PG V T + +R GKL
Sbjct: 166 RSLACEWAAKGIRVNAVL--PGYVRTQMVAELER---AGKL 201
|
Length = 520 |
| >gnl|CDD|181334 PRK08263, PRK08263, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 8e-16
Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 29/209 (13%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
V + GASRG G + + LE+ D+ V+AT R+ AT L DL ++ +RL L LD+T
Sbjct: 5 VWFITGASRGFGRAWTEAALERGDR--VVATARDT--AT-LADLAEKYGDRLLPLALDVT 59
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
+ + A+ ++ E +G L++++N +G + +V +S + N G
Sbjct: 60 DRAAVFAAVETAVEHFGRLDIVVNNAGYGLFGMI-------EEVTESEARAQIDTNFFGA 112
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
+ V + + P L+ +G ++ + +SA G Y ASK AL +++++
Sbjct: 113 LWVTQAVLPYLREQRSGHIIQISSIGGISA-FPMSG--------IYHASKWALEGMSEAL 163
Query: 210 SVE---FGRKKDPVICILLHPGTVDTDLS 235
+ E FG K L+ PG TD +
Sbjct: 164 AQEVAEFGIK-----VTLVEPGGYSTDWA 187
|
Length = 275 |
| >gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-15
Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 20/205 (9%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
LV GA++GIG A+ L E + V A RN L+ R+ +LD+
Sbjct: 2 LVTGAAQGIGYAVARALAEAGAR--VAAVDRNFEQLLELVADLRRYGYPFATYKLDVADS 59
Query: 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPIL 151
+ ++ + ++ +YG +++L+N +GIL + + + + + + VN G
Sbjct: 60 AAVDEVVQRLEREYGPIDVLVNVAGILRLGAID--SLSDEDWQAT-----FAVNTFGVFN 112
Query: 152 VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSV 211
V + +SP +K +G + V + +A V +G + Y ASKAAL LTK + +
Sbjct: 113 VSQAVSPRMKRRRSGA---IVTVGSNAANVPRMG---MAA---YAASKAALTMLTKCLGL 163
Query: 212 EFGRKKDPVICILLHPGTVDTDLSR 236
E + C ++ PG+ DT++ R
Sbjct: 164 ELAP--YGIRCNVVSPGSTDTEMQR 186
|
Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250 |
| >gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-15
Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 24/220 (10%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
G V+LV GA+RGIG A +L + VI + A +L + Q+D
Sbjct: 6 GRVALVTGAARGIGRAIAVRLAADGAE--VIVVDICGDDAAATAELVEAAGGKARARQVD 63
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ--PETTLNKVEKSSLMLAYEVN 145
+ + ++A+ + E +G L++L+ +GI + +V +VN
Sbjct: 64 VRDRAALKAAVAAGVEDFGRLDILVANAGI-FPLTPFAEMDDEQWERV--------IDVN 114
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G L+ + P L G G + S+ G G Y ASKA L
Sbjct: 115 LTGTFLLTQAALPALIRAGGG------RIVLTSSVAGPRVGYP--GLAHYAASKAGLVGF 166
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTD-LSRPFQRNVPE 244
T+++++E + V + HPG VDT E
Sbjct: 167 TRALALELAARNITVNSV--HPGGVDTPMAGNLGDAQWAE 204
|
Length = 251 |
| >gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 1e-15
Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 21/206 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
KG V++V G +RG+GL A+ L+ + K V+ + + L
Sbjct: 4 KGKVAIVTGGARGLGLAHARLLVAEGAK--VVLSDILDEEGQAAAA---ELGDAARFFHL 58
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T E A + +E +G L++L+N +GIL+ V ETT + E L+ ++N
Sbjct: 59 DVTDEDGWTAVVDTAREAFGRLDVLVNNAGILTGGTV---ETTTLE-EWRRLL---DINL 111
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G L + + P +K G G + N+S+ G +GD L Y ASK A+ LT
Sbjct: 112 TGVFLGTRAVIPPMKEAGGG------SIINMSSIEGLVGDPALAA---YNASKGAVRGLT 162
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDT 232
KS ++E + + +HPG + T
Sbjct: 163 KSAALECATQGYGIRVNSVHPGYIYT 188
|
This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247 |
| >gnl|CDD|236190 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-15
Identities = 55/214 (25%), Positives = 90/214 (42%), Gaps = 37/214 (17%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G V GA++GIG A +E VI + L
Sbjct: 7 SGKTVWVTGAAQGIGYAVALAFVEAG--AKVIGFDQAFLTQEDY---------PFATFVL 55
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D++ + + + + + G L++L+NA+GIL + + +++ + VNA
Sbjct: 56 DVSDAAAVAQVCQRLLAETGPLDVLVNAAGILRMGAT--DSLSDEDWQQT-----FAVNA 108
Query: 147 VGPILVIKHMSPLLKVGGTG-IERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G + + + P + +G I V V +N +A V I G +Y ASKAAL L
Sbjct: 109 GGAFNLFRAVMPQFRRQRSGAI---VTVGSN-AAHVPRI------GMAAYGASKAALTSL 158
Query: 206 TKSVSVE---FGRKKDPVICILLHPGTVDTDLSR 236
K V +E +G V C ++ PG+ DTD+ R
Sbjct: 159 AKCVGLELAPYG-----VRCNVVSPGSTDTDMQR 187
|
Length = 252 |
| >gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-15
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 20/178 (11%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVL 84
K L+ GAS GIG A+ L + ++ RN L + +P R +
Sbjct: 2 DLKDKRVLLTGASGGIGQALAEALAAAGAR--LLLVGRNAEKLEALAA-RLPYPGRHRWV 58
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
DLT E+ EA +E G +N+LIN +G+ L + ++ +
Sbjct: 59 VADLTSEAGREAVLARARE-MGGINVLINNAGVNH-------FALLEDQDPEAIERLLAL 110
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
N P+ + + + PLL+ + A+V N+ + GSIG G+ SY ASK AL
Sbjct: 111 NLTAPMQLTRALLPLLR------AQPSAMVVNVGSTFGSIG---YPGYASYCASKFAL 159
|
Length = 263 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 3e-15
Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 28/222 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
+G +LV GASRGIG A +L G V+ N A L VL
Sbjct: 4 QGKTALVTGASRGIGRAIALRLAA---DGAKVVIYDSNEEAAEALAAELRAAGGEARVLV 60
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL---MLAY 142
D++ E+ + A ++ E +G+L++L+N +GI T + + S
Sbjct: 61 FDVSDEAAVRALIEAAVEAFGALDILVNNAGI----------TRDALLPRMSEEDWDRVI 110
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
+VN G V++ P + G +V N+S+ G G N G +Y A+KA +
Sbjct: 111 DVNLTGTFNVVRAALPPMIKARYG-----RIV-NISSVSGVTG-NP--GQTNYSAAKAGV 161
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
TK++++E + V + PG +DTD++ V
Sbjct: 162 IGFTKALALELASRGITVNAVA--PGFIDTDMTEGLPEEVKA 201
|
Length = 246 |
| >gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-15
Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 19/211 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
KG V++V G SRGIGL A+ L E I P +L ++ + +
Sbjct: 7 KGKVAIVTGGSRGIGLAIARALAE-AGADVAIIYNSAPRAEEKAEELAKKYGVKTKAYKC 65
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEVN 145
D++ + ++E + K I++ +G +++LI +GI L NKV +VN
Sbjct: 66 DVSSQESVEKTFKQIQKDFGKIDILIANAGITVHKPALDYTYEQWNKV--------IDVN 117
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G + + + K G G + + A++S + NR +Y ASKAA+ L
Sbjct: 118 LNGVFNCAQAAAKIFKKQGKG---SLIITASMSGTIV----NRPQPQAAYNASKAAVIHL 170
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
KS++VE+ + V I PG +DTDL+
Sbjct: 171 AKSLAVEWAKYFIRVNSI--SPGYIDTDLTD 199
|
NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 252 |
| >gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2 | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 3e-15
Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 22/205 (10%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
L+ G + GIGL A++ LE + VI T R L + K P + + LD+
Sbjct: 9 LITGGTSGIGLALARKFLEAGNT--VIITGRRE---ERLAEAKKELPN-IHTIVLDVGDA 62
Query: 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPIL 151
++EA A+++ +Y +L++LIN +GI ++ P + L+K + + N +GPI
Sbjct: 63 ESVEALAEALLSEYPNLDILINNAGIQRPIDLRDPASDLDKADTE-----IDTNLIGPIR 117
Query: 152 VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSV 211
+IK P LK ++ A + N+S+ + + Y A+KAAL+ T ++
Sbjct: 118 LIKAFLPHLK------KQPEATIVNVSS---GLAFVPMAANPVYCATKAALHSYTLALRH 168
Query: 212 EFGRKKDPVICILLHPGTVDTDLSR 236
+ K V + + P VDT+L
Sbjct: 169 QL--KDTGVEVVEIVPPAVDTELHE 191
|
Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228 |
| >gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 7e-15
Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 21/209 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
+G V+LV GASRGIG A++L + VI + GA L+ + +Q
Sbjct: 4 EGKVALVTGASRGIGRAIAERLAAQGAN-VVINYASSEAGAEALVAEIGALGGKALAVQG 62
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEVN 145
D++ ++E + K ++G +++L+N +GI +++ E ++V + N
Sbjct: 63 DVSDAESVERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRV--------IDTN 114
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G + K ++ + +G ++ N+S+ VG +G+ +Y ASKA +
Sbjct: 115 LTGVFNLTKAVARPMMKQRSG-----RII-NISSVVGLMGNPGQA---NYAASKAGVIGF 165
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDL 234
TKS++ E + V + PG ++TD+
Sbjct: 166 TKSLARELASRGITVNAV--APGFIETDM 192
|
Length = 248 |
| >gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-14
Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 28/209 (13%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
V+LV GASRGIG+E A+ L + V RNP L ++ + D
Sbjct: 2 VALVTGASRGIGIEIARALARDGYR--VSLGLRNPEDLAALS----ASGGDVEAVPYDAR 55
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
A ++++++G +++L++ +GI +P T + L + +N + P
Sbjct: 56 DPEDARALVDALRDRFGRIDVLVHNAGI------GRPTTLRE-GSDAELEAHFSINVIAP 108
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
+ + + P L+ G+G V + +LS G G Y ASK AL L ++
Sbjct: 109 AELTRALLPALREAGSG---RVVFLNSLS---GKRVLAGNAG---YSASKFALRALAHAL 159
Query: 210 SVEFGRK--KDPVICILLHPGTVDTDLSR 236
E + +C PG VDT +++
Sbjct: 160 RQEGWDHGVRVSAVC----PGFVDTPMAQ 184
|
This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223 |
| >gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12 | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-14
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 24/211 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
+G V++V GA GIG A +L +G V+ + A ++ + L+
Sbjct: 2 EGKVAIVTGAGAGIGAACAARL---AREGARVVVADIDGGAAQAVVA---QIAGGALALR 55
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
+D+T E + A + E++G L+LL+N +G + + + +T L +++ +N
Sbjct: 56 VDVTDEQQVAALFERAVEEFGGLDLLVNNAGAMHLTPAII-DTDLAVWDQT-----MAIN 109
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G L +H +P + G G ++V NLS+ G GD G+ +Y ASKAA+ L
Sbjct: 110 LRGTFLCCRHAAPRMIARGGG-----SIV-NLSSIAGQSGD---PGYGAYGASKAAIRNL 160
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
T++++ E + C L PG +DT L
Sbjct: 161 TRTLAAELR--HAGIRCNALAPGLIDTPLLL 189
|
These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246 |
| >gnl|CDD|187620 cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 8e-14
Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 25/210 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVL 84
G V+LV GASRGIG AK+L G V+ + A ++ + +
Sbjct: 2 AGKVALVTGASRGIGRAIAKRLAR---DGASVVVNYASSKAAAEEVVAEIEAAGGKAIAV 58
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
Q D++ S + + ++ +G +++L+N +G++ + +P ++ E + V
Sbjct: 59 QADVSDPSQVARLFDAAEKAFGGVDILVNNAGVM----LKKPIAETSEEEFDRMF---TV 111
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N G V++ + L+ GG I N+S+ S+ + +Y SKAA+
Sbjct: 112 NTKGAFFVLQEAAKRLRDGGRII--------NISS---SLTAAYTPNYGAYAGSKAAVEA 160
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
T+ ++ E G + V + PG VDTD+
Sbjct: 161 FTRVLAKELGGRGITVNAVA--PGPVDTDM 188
|
1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|177895 PLN02253, PLN02253, xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-13
Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 46/242 (19%)
Query: 17 TSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVI--------ATCRNPNGAT 68
++S+ S + G V+LV G + GIG + + K C++ C + G
Sbjct: 7 SASSLPSQRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEP 66
Query: 69 GLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPET 128
+ D+TVE + + +K+G+L++++N +G+ P
Sbjct: 67 NVC-----------FFHCDVTVEDDVSRAVDFTVDKFGTLDIMVNNAGLTG-----PPCP 110
Query: 129 TLNKVEKSSLMLAYEVNAVGPILVIKH----MSPLLKVGGTGIERDVAVVANLSARVGSI 184
+ VE S ++VN G L +KH M PL K G+ + + ++++ +G +
Sbjct: 111 DIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKK--GSIVS-----LCSVASAIGGL 163
Query: 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
G H+Y SK A+ LT+SV+ E G+ V C+ P V T L+ ++PE
Sbjct: 164 GP------HAYTGSKHAVLGLTRSVAAELGKHGIRVNCV--SPYAVPTALALA---HLPE 212
Query: 245 GK 246
+
Sbjct: 213 DE 214
|
Length = 280 |
| >gnl|CDD|187647 cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-13
Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
G V+LV G + GIGL AK+L + V+ +P A + + R +Q D
Sbjct: 1 GKVALVTGGASGIGLAIAKRLAAEG--AAVVVADIDPEIAE-KVAEAAQGGPRALGVQCD 57
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
+T E+ ++++ + ++G L+++++ +GI + + ET+L +S ++N
Sbjct: 58 VTSEAQVQSAFEQAVLEFGGLDIVVSNAGIATSSPIA--ETSLEDWNRS-----MDINLT 110
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
G LV + ++K G G +V N S + G N +Y A+KAA L +
Sbjct: 111 GHFLVSREAFRIMKSQGIG----GNIVFNASKNAVAPGPNAA----AYSAAKAAEAHLAR 162
Query: 208 SVSVEFGR 215
+++E G
Sbjct: 163 CLALEGGE 170
|
This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|180796 PRK07023, PRK07023, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-13
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 29/207 (14%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT-- 89
+V G SRG+G A+QLL+ +A R+P L ERL ++LDL+
Sbjct: 5 IVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP-------SLAAAAGERLAEVELDLSDA 57
Query: 90 --VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
+ + + S LLIN +G ++P L ++ +++ A +N
Sbjct: 58 AAAAAWLAGDLLAAFVDGASRVLLINNAG------TVEPIGPLATLDAAAIARAVGLNVA 111
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
P+++ + L + ER + +++ +AR N GW Y A+KAAL+ +
Sbjct: 112 APLML---TAALAQAASDAAERRILHISSGAAR------NAYAGWSVYCATKAALDHHAR 162
Query: 208 SVSVEFGRKKDPVICILLHPGTVDTDL 234
+V+++ R + + L PG VDT +
Sbjct: 163 AVALDANR---ALRIVSLAPGVVDTGM 186
|
Length = 243 |
| >gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-13
Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 26/214 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
KG V+LV GASRGIG A L E G ++ RN A L +
Sbjct: 4 KGKVALVTGASRGIGFGIASGLAE---AGANIVINSRNEEKAEEAQQLIEKEGVEATAFT 60
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEV 144
D++ E I+A+ ++I+E +G +++L+N +GI+ + PE V +L + V
Sbjct: 61 CDVSDEEAIKAAVEAIEEDFGKIDILVNNAGIIRRHPAEEFPEAEWRDVIDVNLNGVFFV 120
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHS-YRASKAALN 203
+ V +HM I++ + N + S+ G Y ASK +
Sbjct: 121 SQ----AVARHM----------IKQGHGKIIN----ICSLLSELGGPPVPAYAASKGGVA 162
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP 237
LTK+++ E+ R + + PG T+++
Sbjct: 163 GLTKALATEWAR--HGIQVNAIAPGYFATEMTEA 194
|
Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|187603 cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-13
Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 20/196 (10%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
G V++V GA G G A++ ++ + VIA N +GA + E +Q D
Sbjct: 5 GKVAIVTGAGSGFGEGIARRFAQEGAR-VVIAD-INADGAERVAA---DIGEAAIAIQAD 59
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
+T + +EA ++ K+G L++L+N +GI +P + +V++ + VN
Sbjct: 60 VTKRADVEAMVEAALSKFGRLDILVNNAGITHRN---KP---MLEVDEEEFDRVFAVNVK 113
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
L + + P ++ G G+ ++A A L R G W Y ASK + TK
Sbjct: 114 SIYLSAQALVPHMEEQGGGVIINIASTAGLRPRPGLT-------W--YNASKGWVVTATK 164
Query: 208 SVSVEFGRKKDPVICI 223
+++VE + V C+
Sbjct: 165 AMAVELAPRNIRVNCL 180
|
This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 248 |
| >gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 6e-13
Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 24/209 (11%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG----LLDLKNRFPERLDV 83
G L+ G S GIG AK+L+++ VI R+ + + N +++
Sbjct: 1 GKHVLITGGSSGIGKALAKELVKEGAN--VIIVARSESKLEEAVEEIEAEANASGQKVSY 58
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYE 143
+ DL+ +E + EK G +L++N +GI SIP + + + T + E+ +
Sbjct: 59 ISADLSDYEEVEQAFAQAVEKGGPPDLVVNCAGI-SIPGLFE-DLTAEEFERG-----MD 111
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
VN G + V + PL+K G + V++ +A VG G+ +Y SK AL
Sbjct: 112 VNYFGSLNVAHAVLPLMKEQRPG---HIVFVSSQAALVGIY------GYSAYCPSKFALR 162
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDT 232
L +S+ E V + P DT
Sbjct: 163 GLAESLRQELKPYNIRVSVVY--PPDTDT 189
|
These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239 |
| >gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 6e-13
Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 26/210 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE-RLDVLQ 85
KG V+L+ GAS GIG A+ L E K V+ R L L + L
Sbjct: 5 KGKVALITGASSGIGEATARALAEAGAK--VVLAARR---EERLEALADEIGAGAALALA 59
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
LD+T + +EA+ +++ E++G +++L+N +G+ P + ++ M+ + N
Sbjct: 60 LDVTDRAAVEAAIEALPEEFGRIDILVNNAGLAL----GDPLDEAD-LDDWDRMI--DTN 112
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHS-YRASKAALNQ 204
G + + + P + +ER + NL GSI + Y A+KAA+
Sbjct: 113 VKGLLNGTRAVLPGM------VERKSGHIINL----GSIAGRYPYPGGAVYGATKAAVRA 162
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
+ + E V I PG V+T
Sbjct: 163 FSLGLRQELAGTGIRVTVI--SPGLVETTE 190
|
Length = 246 |
| >gnl|CDD|187617 cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-13
Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 25/211 (11%)
Query: 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV 90
+LV G SRGIG A +L E VI ++ + A + + V++ D++
Sbjct: 1 ALVTGGSRGIGKAIALRLAE-RGADVVINYRKSKDAAAEVAAEIEELGGKAVVVRADVSQ 59
Query: 91 ESTIEASAKSIKEKYGSLNLLIN--ASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVG 148
+E ++KE++G L++L++ A+G +P L+++ + N
Sbjct: 60 PQDVEEMFAAVKERFGRLDVLVSNAAAG------AFRP---LSELTPAHWDAKMNTNLKA 110
Query: 149 PILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLG-GWHSYRASKAALNQLTK 207
+ + + L++ G G +VA + S+G R + + +KAAL L +
Sbjct: 111 LVHCAQQAAKLMRERGGG-----RIVA-----ISSLGSIRALPNYLAVGTAKAALEALVR 160
Query: 208 SVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
++VE G + V + PG +DTD F
Sbjct: 161 YLAVELGPRGIRVNAVS--PGVIDTDALAHF 189
|
This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 8e-13
Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 26/189 (13%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
V + G +RGIG A + D+ ++ R+ GA L + E L +Q D
Sbjct: 269 PRVVAITGGARGIGRAVADRFAAAGDR--LLIIDRDAEGAKKLAEALG--DEHL-SVQAD 323
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSI--PNVLQPETTLNKVEKSSLMLAYEVN 145
+T E+ +E++ I+ ++G L++L+N +GI + P++ Q +V Y+VN
Sbjct: 324 ITDEAAVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRV--------YDVN 375
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G + + L+ GG V+ NL + + L ++Y ASKAA+ L
Sbjct: 376 LSGAFACARAAARLMSQGG--------VIVNLGSIASLLA---LPPRNAYCASKAAVTML 424
Query: 206 TKSVSVEFG 214
++S++ E+
Sbjct: 425 SRSLACEWA 433
|
Length = 520 |
| >gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 8e-13
Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 29/210 (13%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF--PERLDVLQLD 87
+++V GAS G GL +L +K VIAT RNP LL + + + V QLD
Sbjct: 5 IAIVTGASSGFGLLTTLELAKKGYL--VIATMRNPEKQENLLSQATQLNLQQNIKVQQLD 62
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
+T +++I +KE G ++LL+N +G + V E + + K +E N
Sbjct: 63 VTDQNSIHNFQLVLKE-IGRIDLLVNNAGYANGGFV--EEIPVEEYRKQ-----FETNVF 114
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
G I V + + P ++ ++ + N+S+ G +G L Y +SK AL ++
Sbjct: 115 GAISVTQAVLPYMR------KQKSGKIINISSISGRVGFPGLS---PYVSSKYALEGFSE 165
Query: 208 SVSVE---FGRKKDPVICILLHPGTVDTDL 234
S+ +E FG + L+ PG+ +T++
Sbjct: 166 SLRLELKPFG-----IDVALIEPGSYNTNI 190
|
Length = 280 |
| >gnl|CDD|187634 cd08929, SDR_c4, classical (c) SDR, subgroup 4 | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-12
Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLD--LKNRFPERLDVLQ 85
+LV GASRGIG A+ L +G + C R+ L+ DV
Sbjct: 1 KAALVTGASRGIGEATARLLHA---EGYRVGICARDEARLAAAAAQELEGVLGLAGDVRD 57
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
E+ + + +++E +G L+ L+N +G+ V++P L E ++
Sbjct: 58 -----EADVRRAVDAMEEAFGGLDALVNNAGV----GVMKPVEELTPEEWRLVLD--TNL 106
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
+ K LL+ GG + N+ + G N G +Y ASK L L
Sbjct: 107 TGAFYCIHKAAPALLRRGG-------GTIVNVGSLAGK---NAFKGGAAYNASKFGLLGL 156
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLS 235
+++ ++ V+ ++ PG+VDT +
Sbjct: 157 SEAAMLDLREANIRVVNVM--PGSVDTGFA 184
|
This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 226 |
| >gnl|CDD|187645 cd08941, 3KS_SDR_c, 3-keto steroid reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-12
Identities = 62/245 (25%), Positives = 108/245 (44%), Gaps = 40/245 (16%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGC---VIATCRN-PNGATGLLDLKNRFPE---RLD 82
V LV GA+ G+GL ++LL ++D+ +I CRN L P+ D
Sbjct: 3 VVLVTGANSGLGLAICERLLAEDDENPELTLILACRNLQRAEAACRALLASHPDARVVFD 62
Query: 83 VLQLDLTVESTIEASAKSIKEKYGSLN-LLINA-----SGILSIPNVL------------ 124
+ +DL+ ++ A+AK +K++Y L+ L +NA GI I +
Sbjct: 63 YVLVDLSNMVSVFAAAKELKKRYPRLDYLYLNAGIMPNPGIDWIGAIKEVLTNPLFAVTN 122
Query: 125 -----QPETTLNKVEKS---SLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVAN 176
Q E L++ +K+ L ++ N G +I+ + PLL G + + ++
Sbjct: 123 PTYKIQAEGLLSQGDKATEDGLGEVFQTNVFGHYYLIRELEPLLCRSDGGSQ--IIWTSS 180
Query: 177 LSARVG--SIGD-NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
L+A S+ D L G Y +SK ++ L S+++ K V ++HPG T+
Sbjct: 181 LNASPKYFSLEDIQHLKGPAPYSSSKYLVDLL--SLALNRKFNKLGVYSYVVHPGICTTN 238
Query: 234 LSRPF 238
L+
Sbjct: 239 LTYGI 243
|
3-keto steroid reductase (in concert with other enzymes) catalyzes NADP-dependent sterol C-4 demethylation, as part of steroid biosynthesis. 3-keto reductase is a classical SDR, with a well conserved canonical active site tetrad and fairly well conserved characteristic NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 290 |
| >gnl|CDD|180440 PRK06172, PRK06172, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-12
Identities = 64/233 (27%), Positives = 99/233 (42%), Gaps = 33/233 (14%)
Query: 23 SVKWKGGVSLVQGASRGIG----LEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP 78
S+ + G V+LV G + GIG L FA++ + V+ R+ G + L
Sbjct: 2 SMTFSGKVALVTGGAAGIGRATALAFAREGAK------VVVADRDAAGGEETVALIREAG 55
Query: 79 ERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL 138
+ D+T ++ ++A + YG L+ N +GI L + + E ++
Sbjct: 56 GEALFVACDVTRDAEVKALVEQTIAAYGRLDYAFNNAGIEIEQGRLAEGS---EAEFDAI 112
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG-SIGDNRLGGWHSYRA 197
M VN G L +K+ PL+ G G + A VA L A SI Y A
Sbjct: 113 M---GVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAPKMSI----------YAA 159
Query: 198 SKAALNQLTKSVSVEFGRKKDPV--ICILLHPGTVDTDLSRPFQRNVPEGKLF 248
SK A+ LTKS ++E+ +K V +C P +DTD+ R P F
Sbjct: 160 SKHAVIGLTKSAAIEYAKKGIRVNAVC----PAVIDTDMFRRAYEADPRKAEF 208
|
Length = 253 |
| >gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-12
Identities = 60/216 (27%), Positives = 89/216 (41%), Gaps = 36/216 (16%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
V+++ G + GIGL AK LL+K I GA L N + +Q D+T
Sbjct: 2 VAIITGGASGIGLATAKLLLKKG-AKVAILDRNENPGAAAELQAINPKVKAT-FVQCDVT 59
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
+ A+ K EK+G +++LIN +GIL + L EK+ +VN G
Sbjct: 60 SWEQLAAAFKKAIEKFGRVDILINNAGILDEKSYLFAGKLPPPWEKT-----IDVNLTGV 114
Query: 150 I----LVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHS------YRASK 199
I L + +M GG G V+ N +GS+ G + Y ASK
Sbjct: 115 INTTYLALHYMD--KNKGGKG-----GVIVN----IGSV-----AGLYPAPQFPVYSASK 158
Query: 200 AALNQLTKSVSVEFGRKKD-PVICILLHPGTVDTDL 234
+ T+S++ K V I PG +T L
Sbjct: 159 HGVVGFTRSLADLLEYKTGVRVNAI--CPGFTNTPL 192
|
This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-12
Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 29/220 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLD--- 82
+G V ++ GAS GIG E A L G ++ + R L ++K+ E
Sbjct: 2 QGKVVIITGASSGIGEELAYHL---ARLGARLVLSARREER---LEEVKSECLELGAPSP 55
Query: 83 -VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLA 141
V+ LD++ E + + +G L++LIN +GI S+ ++ +T+++ K +M
Sbjct: 56 HVVPLDMSDLEDAEQVVEEALKLFGGLDILINNAGI-SMRSLFH-DTSIDVDRK--IM-- 109
Query: 142 YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
EVN GP+ + K P L G + VV++++ ++G + +Y ASK A
Sbjct: 110 -EVNYFGPVALTKAALPHLIERSQGS---IVVVSSIAGKIG------VPFRTAYAASKHA 159
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN 241
L S+ E + + ++ PG +DT+++
Sbjct: 160 LQGFFDSLRAEL--SEPNISVTVVCPGLIDTNIAMNALSG 197
|
Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-12
Identities = 55/227 (24%), Positives = 82/227 (36%), Gaps = 30/227 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVL-- 84
G LV G + GIG A+ E + V L V
Sbjct: 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSE------AALAATAARLPGAKVTAT 63
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
D+ + +E + E++G L++L+N +GI P ++++ V
Sbjct: 64 VADVADPAQVERVFDTAVERFGGLDVLVNNAGIAG------PTGGIDEITPEQWEQTLAV 117
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N G + PLLK G G V+ LS+ G +G G Y ASK A+
Sbjct: 118 NLNGQFYFARAAVPLLKASGHG-----GVIIALSSVAGRLG---YPGRTPYAASKWAVVG 169
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDT------DLSRPFQRNVPEG 245
L KS+++E G V IL PG V +R Q +
Sbjct: 170 LVKSLAIELGPLGIRVNAIL--PGIVRGPRMRRVIEARAQQLGIGLD 214
|
Length = 264 |
| >gnl|CDD|181298 PRK08219, PRK08219, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-11
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 45/214 (21%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
+L+ GASRGIG A++L + ++ R A L +L P +DLT
Sbjct: 5 TALITGASRGIGAAIARELAPTHT---LLLGGRP---AERLDELAAELP-GATPFPVDLT 57
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL---MLAYEVNA 146
I A+ + + L++L++ +G+ L V +S++ EVN
Sbjct: 58 DPEAIAAAVEQLGR----LDVLVHNAGV----------ADLGPVAESTVDEWRATLEVNV 103
Query: 147 VGPILVIKHMSPLLKV-GGTGIERDVAVVA-NLSARVGSIGDNRLGGWHSYRASKAALNQ 204
V P + + + P L+ G VV N A G GW SY ASK AL
Sbjct: 104 VAPAELTRLLLPALRAAHGH-------VVFINSGA-----GLRANPGWGSYAASKFALRA 151
Query: 205 LTKSVSVEFGRKKDP-VICIL-LHPGTVDTDLSR 236
L ++ R+++P + + +HPG DTD+ R
Sbjct: 152 LADAL-----REEEPGNVRVTSVHPGRTDTDMQR 180
|
Length = 227 |
| >gnl|CDD|187592 cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-11
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 27/205 (13%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
+V GA++GIG A+ LL+ VIA L + + L + LD+
Sbjct: 2 IVTGAAQGIGRAVARHLLQAGAT--VIALDLPFV-------LLLEYGDPLRLTPLDVADA 52
Query: 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPIL 151
+ + + ++G ++ L+N +G+L + + + VN G
Sbjct: 53 AAVREVCSRLLAEHGPIDALVNCAGVLRPGA-------TDPLSTEDWEQTFAVNVTGVFN 105
Query: 152 VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSV 211
+++ ++P +K TG + VA+ +A V I +Y ASKAAL L+K + +
Sbjct: 106 LLQAVAPHMKDRRTG---AIVTVASNAAHVPRI------SMAAYGASKAALASLSKCLGL 156
Query: 212 EFGRKKDPVICILLHPGTVDTDLSR 236
E V C ++ PG+ DT + R
Sbjct: 157 ELAPYG--VRCNVVSPGSTDTAMQR 179
|
2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|180586 PRK06483, PRK06483, dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-11
Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 27/191 (14%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
L+ GA + IGL A LL + VI + R A + L+ +Q D +
Sbjct: 6 LITGAGQRIGLALAWHLLAQGQP--VIVSYRTHYPA--IDGLRQA---GAQCIQADFSTN 58
Query: 92 STIEASAKSIKEKYGSLNLLI-NASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPI 150
+ I A +K+ L +I NAS L+ L + M+ VNA P
Sbjct: 59 AGIMAFIDELKQHTDGLRAIIHNASDWLAEKPGAPLADVLAR------MMQIHVNA--PY 110
Query: 151 LVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVS 210
L+ + LL+ G D+ + + GS D + Y ASKAAL+ +T S
Sbjct: 111 LLNLALEDLLRGHGHAA-SDIIHITDYVVEKGS--DKHIA----YAASKAALDNMTLS-- 161
Query: 211 VEFGRKKDPVI 221
F K P +
Sbjct: 162 --FAAKLAPEV 170
|
Length = 236 |
| >gnl|CDD|187626 cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-11
Identities = 65/238 (27%), Positives = 102/238 (42%), Gaps = 40/238 (16%)
Query: 27 KGGVSLVQGASRGIG----LEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLD 82
G V+L+ A++GIG L FA++ VIAT N L R P +
Sbjct: 1 DGKVALITAAAQGIGRAIALAFAREGAN------VIATDINEE----KLKELERGP-GIT 49
Query: 83 VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAY 142
LD+T + + A AK G +++L N +G + ++L E A
Sbjct: 50 TRVLDVTDKEQVAALAKEE----GRIDVLFNCAGFVHHGSILD-------CEDDDWDFAM 98
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-GD-NRLGGWHSYRASKA 200
+N L+IK + P + + R + N+S+ SI G NR Y +KA
Sbjct: 99 NLNVRSMYLMIKAVLPKM------LARKDGSIINMSSVASSIKGVPNRF----VYSTTKA 148
Query: 201 ALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLL 258
A+ LTKSV+ +F ++ I PGTVDT + P+ + K F+ ++ L
Sbjct: 149 AVIGLTKSVAADFAQQGIRCNAIC--PGTVDTPSLEERIQAQPDPEEALKAFAARQPL 204
|
Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P). Length = 241 |
| >gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-11
Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 30/219 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD-LKNRFPERLDVLQ 85
KG V+L+ G S+GIG A+ LL + K V T R+ L N+ + L
Sbjct: 5 KGKVALITGGSKGIGFAIAEALLAEGYK--VAITARDQKELEEAAAELNNK--GNVLGLA 60
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
D+ E+ ++ + +I +G L++LI +G+ P L E+ L++ + N
Sbjct: 61 ADVRDEADVQRAVDAIVAAFGGLDVLIANAGV----GHFAPVEELT-PEEWRLVI--DTN 113
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G IK P LK GG I N+S+ G+ N G +Y ASK L
Sbjct: 114 LTGAFYTIKAAVPALKRGGGYI-------INISSLAGT---NFFAGGAAYNASKFGLVGF 163
Query: 206 TKSVSVEFGRKKD-PVICILLHPGTVDTDLSRPFQRNVP 243
+++ ++ R+ V I+ PG+V T F + P
Sbjct: 164 SEAAMLDL-RQYGIKVSTIM--PGSVATH----FNGHTP 195
|
Length = 237 |
| >gnl|CDD|182051 PRK09730, PRK09730, putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-11
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 26/212 (12%)
Query: 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT--CRNPNGATGLLDLKNRFPERLDVLQL 86
++LV G SRGIG A L ++ G +A +N + A +++L + + VLQ
Sbjct: 2 AIALVTGGSRGIGRATALLLAQE---GYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQA 58
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D++ E+ + A +I + L L+N +GIL + T+ + + N
Sbjct: 59 DISDENQVVAMFTAIDQHDEPLAALVNNAGILF------TQCTVENLTAERINRVLSTNV 112
Query: 147 VGPIL----VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
G L +K M+ LK GG+G + V++ ++R+G+ G+ + Y ASK A+
Sbjct: 113 TGYFLCCREAVKRMA--LKHGGSG--GAIVNVSSAASRLGAPGE-----YVDYAASKGAI 163
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
+ LT +S+E + V C+ PG + T++
Sbjct: 164 DTLTTGLSLEVAAQGIRVNCV--RPGFIYTEM 193
|
Length = 247 |
| >gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-11
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 44/239 (18%)
Query: 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPER 80
+ + + G LV GAS GIG A L ++ + V+A RN A L L
Sbjct: 2 NMAFDFSGKSVLVTGASSGIGRACAVALAQRGAR--VVAAARN---AAALDRLAGETGCE 56
Query: 81 LDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQP--ETTLNKVEKSSL 138
L+LD+ ++ I A+ + G+ + L+N +GI L+ + T ++
Sbjct: 57 --PLRLDVGDDAAIRAALAA----AGAFDGLVNCAGI----ASLESALDMTAEGFDR--- 103
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG-DNRLGGWHSYRA 197
VNA G LV +H++ + G G + N+S++ +G + L +Y A
Sbjct: 104 --VMAVNARGAALVARHVARAMIAAGRG-----GSIVNVSSQAALVGLPDHL----AYCA 152
Query: 198 SKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL----------SRPFQRNVPEGK 246
SKAAL+ +T+ + VE G + ++P T + S P +P G+
Sbjct: 153 SKAALDAITRVLCVELGPHG--IRVNSVNPTVTLTPMAAEAWSDPQKSGPMLAAIPLGR 209
|
Length = 245 |
| >gnl|CDD|180411 PRK06123, PRK06123, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-11
Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 28/212 (13%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
V ++ GASRGIG A E+ C + RN + A ++ R + D+
Sbjct: 4 VMIITGASRGIGAATALLAAERGYAVC-LNYLRNRDAAEAVVQAIRRQGGEALAVAADVA 62
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
E+ + +++ + G L+ L+N +GI L+ + L +++ + L + N VG
Sbjct: 63 DEADVLRLFEAVDRELGRLDALVNNAGI------LEAQMRLEQMDAARLTRIFATNVVGS 116
Query: 150 IL----VIKHMSPLLKVGGTGIERDVAVVANLS---ARVGSIGDNRLGGWHSYRASKAAL 202
L +K MS + GG G + N+S AR+GS G+ + Y ASK A+
Sbjct: 117 FLCAREAVKRMST--RHGGRG-----GAIVNVSSMAARLGSPGE-----YIDYAASKGAI 164
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
+ +T ++ E + V + PG + T++
Sbjct: 165 DTMTIGLAKEVAAEGIRVNAV--RPGVIYTEI 194
|
Length = 248 |
| >gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-11
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 20/185 (10%)
Query: 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDV 83
+K G L+ G + GIGL AK+ LE + VI RN L + K PE
Sbjct: 1 MKTTGNTILITGGASGIGLALAKRFLELGNT--VIICGRN---EERLAEAKAENPEIHTE 55
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYE 143
D+ + + +K++Y +LN+LIN +GI ++ E L+ E+
Sbjct: 56 -VCDVADRDSRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQE-----IA 109
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
N + PI + + P L + + A + N+S+ + + Y A+KAA++
Sbjct: 110 TNLLAPIRLTALLLPHL------LRQPEATIINVSS---GLAFVPMASTPVYCATKAAIH 160
Query: 204 QLTKS 208
T +
Sbjct: 161 SYTLA 165
|
Length = 245 |
| >gnl|CDD|236145 PRK08063, PRK08063, enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 5e-11
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 39/239 (16%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G V+LV G+SRGIG A +L E +G + R+ A + + ++
Sbjct: 4 GKVALVTGSSRGIGKAIALRLAE---EGYDIAVNYARSRKAAEETAEEIEALGRKALAVK 60
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLIN--ASGILSIPNVLQPETTLNKVEKSSLMLAYE 143
++ I+ I E++G L++ +N ASG VL+P ++E+S
Sbjct: 61 ANVGDVEKIKEMFAQIDEEFGRLDVFVNNAASG------VLRP---AMELEESHWDWTMN 111
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR-LGGWHSYRASKAAL 202
+NA + + + L++ G G +++ + S+G R L + + SKAAL
Sbjct: 112 INAKALLFCAQEAAKLMEKVGGG-----KIIS-----LSSLGSIRYLENYTTVGVSKAAL 161
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTKE 251
LT+ ++VE K V + G VDTD + F + P G++ E
Sbjct: 162 EALTRYLAVELAPKGIAVNAV--SGGAVDTDALKHFPNREELLEDARAKTPAGRMVEPE 218
|
Length = 250 |
| >gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 5e-11
Identities = 56/217 (25%), Positives = 95/217 (43%), Gaps = 31/217 (14%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDLKNRFPER---LD 82
+G +LV G ++GIG ++L G + TC RN L + E+ ++
Sbjct: 5 EGKTALVTGGTKGIGYAIVEELAGL---GAEVYTCARNQKELDECLT---EWREKGFKVE 58
Query: 83 VLQLDLTVESTIEASAKSIKEKYGS-LNLLINASGILSIPNVLQPETTLNKVEKSSLMLA 141
D++ S + ++ +G LN+L+N +G ++ E E SL+++
Sbjct: 59 GSVCDVSSRSERQELMDTVASHFGGKLNILVNNAGT-----NIRKEAKDYTEEDYSLIMS 113
Query: 142 YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA-RVGSIGDNRLGGWHSYRASKA 200
A + + H PLLK G G ++ VA + A G+ Y A+K
Sbjct: 114 TNFEAAYHLSRLAH--PLLKASGNGNIVFISSVAGVIAVPSGAP----------YGATKG 161
Query: 201 ALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP 237
ALNQLT+S++ E+ KD + + P + T L P
Sbjct: 162 ALNQLTRSLACEWA--KDNIRVNAVAPWVIATPLVEP 196
|
This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251 |
| >gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-10
Identities = 52/255 (20%), Positives = 99/255 (38%), Gaps = 29/255 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
+G V + G G+G A L + + V R + L + L + +
Sbjct: 6 QGKVVAITGGFGGLGRATAAWLAARGAR--VALIGRGAAPLSQTLP--GVPADALRIGGI 61
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
DL + + ++G L+ L+N +G T+ + + Y VN
Sbjct: 62 DLVDPQAARRAVDEVNRQFGRLDALVNIAGAF-------VWGTIADGDADTWDRMYGVNV 114
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
+ K P L G G R V + A + + G G +Y A+KA + +LT
Sbjct: 115 KTTLNASKAALPALTASGGG--RIVNIGAGAALKAGP-------GMGAYAAAKAGVARLT 165
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIKS 266
++++ E + V + P +DT +R ++P+ F++ + +++ +I + S
Sbjct: 166 EALAAELLDRGITVNAV--LPSIIDTPPNRA---DMPDAD-FSRWVTPEQIAAVIAFLLS 219
Query: 267 HDNGKFFAWDGQEIP 281
+ A G IP
Sbjct: 220 DEAQ---AITGASIP 231
|
Length = 239 |
| >gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-10
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 24/194 (12%)
Query: 25 KWK--GGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLD-LKNRFPER 80
+W+ G +L+ GAS+GIGL A++ L G V+ R+ + D L FPER
Sbjct: 4 RWRLDGQTALITGASKGIGLAIAREFL---GLGADVLIVARDADALAQARDELAEEFPER 60
Query: 81 -LDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLM 139
+ L D++ + A +++ + L++L+N +G N+ + + E +
Sbjct: 61 EVHGLAADVSDDEDRRAILDWVEDHWDGLHILVNNAGG----NIRKAAIDYTEDEWRGI- 115
Query: 140 LAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASK 199
+E N + ++ PLLK + ++ V+ L+ R G Y +K
Sbjct: 116 --FETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLT-------HVRSGA--PYGMTK 164
Query: 200 AALNQLTKSVSVEF 213
AAL Q+T++++VE+
Sbjct: 165 AALLQMTRNLAVEW 178
|
Length = 257 |
| >gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-10
Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 47/237 (19%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDK--GC---------VIATCRNPNGATGLLDL 73
+W+G V+LV GAS GIG A+ L++ K GC + A C++ T
Sbjct: 3 RWRGRVALVTGASVGIGAAVARALVQHGMKVVGCARRVDKIEALAAECQSAGYPT----- 57
Query: 74 KNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLN-K 132
FP Q DL+ E I + +I+ ++ +++ IN +G+ +PE L+ K
Sbjct: 58 --LFP-----YQCDLSNEEQILSMFSAIRTQHQGVDVCINNAGL------ARPEPLLSGK 104
Query: 133 VEKSSLMLAYEVNAVGPIL--VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRL- 189
E M V A+ + M ++ + N S+ +R+
Sbjct: 105 TEGWKEMFDVNVLALSICTREAYQSMKE------RNVDDGHIININ------SMSGHRVP 152
Query: 190 --GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
+H Y A+K A+ LT+ + E K + + PG V+T+ + N PE
Sbjct: 153 PVSVFHFYAATKHAVTALTEGLRQELREAKTHIRATSISPGLVETEFAFKLHDNDPE 209
|
Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|180822 PRK07069, PRK07069, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-10
Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 33/229 (14%)
Query: 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLD-------- 82
+ + GA+ G+G A+++ E+ K + N A GL + F ++
Sbjct: 2 AFITGAAGGLGRAIARRMAEQGAK----VFLTDINDAAGL----DAFAAEINAAHGEGVA 53
Query: 83 -VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLA 141
D+T E+ +A + G L++L+N +G+ S + Q +E
Sbjct: 54 FAAVQDVTDEAQWQALLAQAADAMGGLSVLVNNAGVGSFGAIEQ-------IELDEWRRV 106
Query: 142 YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
+N L KH P L+ +++ VA A +Y ASKAA
Sbjct: 107 MAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAEPDYT---------AYNASKAA 157
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTK 250
+ LTKS++++ R+ V C +HP + T + P + + E + K
Sbjct: 158 VASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRK 206
|
Length = 251 |
| >gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-10
Identities = 51/212 (24%), Positives = 98/212 (46%), Gaps = 31/212 (14%)
Query: 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATC--RNPNGATGLLDLKNRFPERLDVLQLDL 88
+LV GASRGIG A +L +G + + GA +++ + + + D+
Sbjct: 1 ALVTGASRGIGRAIALKL---AKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDV 57
Query: 89 TVESTIEASAKSIKEKYGSLNLLINASGI----LSIPNVLQPETTLNKVEKSSLMLAYEV 144
+ ++A + I+E+ G +++L+N +GI L + E + V ++L + +
Sbjct: 58 SDREDVKAVVEEIEEELGPIDILVNNAGITRDNLLM---RMKEEDWDAVIDTNLTGVFNL 114
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
V++ M I++ + N+S+ VG +G+ G +Y ASKA +
Sbjct: 115 TQA----VLRIM----------IKQRSGRIINISSVVGLMGN---AGQANYAASKAGVIG 157
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
TKS++ E + V + PG +DTD++
Sbjct: 158 FTKSLAKELASRNITVNAVA--PGFIDTDMTD 187
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-10
Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 28/217 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL-LDLKNRFPERLDVLQ 85
KG V++V G + G+GL ++LL + K VI N G T L RF +
Sbjct: 1 KGLVAVVTGGASGLGLATVERLLAQGAK-VVILDLPNSPGETVAKLGDNCRF------VP 53
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVL----QPETTLNKVEKSSLMLA 141
+D+T E ++A+ K K+G L++++N +GI Q +L ++
Sbjct: 54 VDVTSEKDVKAALALAKAKFGRLDIVVNCAGIAVAAKTYNKKGQQPHSLELFQR-----V 108
Query: 142 YEVNAVGPILVIKHMSPLL--KVGGTGIERDVAV-VANLSARVGSIGDNRLGGWHSYRAS 198
VN +G VI+ + + G ER V + A+++A G IG +Y AS
Sbjct: 109 INVNLIGTFNVIRLAAGAMGKNEPDQGGERGVIINTASVAAFEGQIGQA------AYSAS 162
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS 235
K + +T ++ + + V+ I PG DT L
Sbjct: 163 KGGIVGMTLPIARDLAPQGIRVVTIA--PGLFDTPLL 197
|
HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252 |
| >gnl|CDD|237100 PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-10
Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 20/210 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
KG V+LV GA+ GIGLE A L ++ K VIA + A L+ + + V +
Sbjct: 3 KGKVALVTGAASGIGLEIALALAKEGAK-VVIADLNDEAAAAAAEALQKAGGKAIGV-AM 60
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T E I A E +G +++L+N +GI + + T EK M+A +
Sbjct: 61 DVTDEEAINAGIDYAVETFGGVDILVNNAGIQHVAPIEDFPT-----EKWKKMIA--IML 113
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G L K P++K G G ++A V L VGS G +Y ++K L LT
Sbjct: 114 DGAFLTTKAALPIMKAQGGGRIINMASVHGL---VGSAGKA------AYVSAKHGLIGLT 164
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
K V++E V + PG VDT L R
Sbjct: 165 KVVALEGA--THGVTVNAICPGYVDTPLVR 192
|
Length = 258 |
| >gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 26/192 (13%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKG-CVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G V+LV GA+ GIG AK+L +G CV+ + A P+R +
Sbjct: 422 GKVALVTGAAGGIGKATAKRLAA---EGACVVLADLDEEAAEAAAAELGG-PDRALGVAC 477
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T E+ ++A+ + +G ++++++ +GI + ET+ +S ++VNA
Sbjct: 478 DVTDEAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIE--ETSDEDWRRS-----FDVNA 530
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVAN---LSARVGSIGDNRLGGWHSYRASKAALN 203
G LV + ++K G G + +A+ ++ Y A+KAA
Sbjct: 531 TGHFLVAREAVRIMKAQGLG--GSIVFIASKNAVNPGPNFGA---------YGAAKAAEL 579
Query: 204 QLTKSVSVEFGR 215
L + +++E G
Sbjct: 580 HLVRQLALELGP 591
|
Length = 681 |
| >gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-10
Identities = 52/208 (25%), Positives = 99/208 (47%), Gaps = 27/208 (12%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFP---ERLDVLQ 85
V+LV GA+RG+G A +L G V+ R+ +L R +Q
Sbjct: 8 VALVTGAARGLGRAIALRLARA---GADVVVHYRS--DEEAAEELVEAVEALGRRAQAVQ 62
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
D+T ++ +EA+ + E++G +++L+N +GI + + + ++ ++ ++ +VN
Sbjct: 63 ADVTDKAALEAAVAAAVERFGRIDILVNNAGI--FEDKPLADMSDDEWDE---VI--DVN 115
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G +++ + P ++ G +V N+S+ G G G +Y A+KA L L
Sbjct: 116 LSGVFHLLRAVVPPMRKQRGG-----RIV-NISSVAGLPG-WP--GRSNYAAAKAGLVGL 166
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTD 233
TK+++ E V + PG +DTD
Sbjct: 167 TKALARELAEYGITVNMV--APGDIDTD 192
|
Length = 249 |
| >gnl|CDD|235794 PRK06398, PRK06398, aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-10
Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 36/210 (17%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
K V++V G S+GIG +L E+ VI D+K +D ++
Sbjct: 5 KDKVAIVTGGSQGIGKAVVNRLKEEGSN--VIN-----------FDIKEPSYNDVDYFKV 51
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNV-LQPETTLNKVEKSSLMLAYEVN 145
D++ + + + KYG +++L+N +GI S + E +++ VN
Sbjct: 52 DVSNKEQVIKGIDYVISKYGRIDILVNNAGIESYGAIHAVEEDEWDRI--------INVN 103
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G L+ K+ P + G V+ N+++ +Y SK A+ L
Sbjct: 104 VNGIFLMSKYTIPYMLKQDKG------VIINIASVQSFAVTRNAA---AYVTSKHAVLGL 154
Query: 206 TKSVSVEFGRKKDPVI-CILLHPGTVDTDL 234
T+S++V++ P I C+ + PG++ T L
Sbjct: 155 TRSIAVDYA----PTIRCVAVCPGSIRTPL 180
|
Length = 258 |
| >gnl|CDD|187646 cd08942, RhlG_SDR_c, RhlG and related beta-ketoacyl reductases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-10
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 26/192 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G + LV G SRGIG A+ LE + VI + R A D + + +
Sbjct: 5 AGKIVLVTGGSRGIGRMIAQGFLEAGAR--VIISARK---AEACADAAEELSAYGECIAI 59
Query: 87 --DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYE 143
DL+ E IEA + E+ L++L+N +G + PE+ +KV +
Sbjct: 60 PADLSSEEGIEALVARVAERSDRLDVLVNNAGATWGAPLEAFPESGWDKV--------MD 111
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGW---HSYRASKA 200
+N + + + PLL+ T + A V N +GSI + +SY ASKA
Sbjct: 112 INVKSVFFLTQALLPLLRAAATA--ENPARVIN----IGSI-AGIVVSGLENYSYGASKA 164
Query: 201 ALNQLTKSVSVE 212
A++QLT+ ++ E
Sbjct: 165 AVHQLTRKLAKE 176
|
Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|180576 PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-10
Identities = 55/214 (25%), Positives = 104/214 (48%), Gaps = 26/214 (12%)
Query: 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA-TGLLDLKNRFPERL 81
S+++KG V+L+ G +RGIG A+ L + K V N A +L+ +
Sbjct: 2 SMRFKGKVALITGGTRGIGRAIAEAFLREGAKVAV-----LYNSAENEAKELREKGVF-- 54
Query: 82 DVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLA 141
++ D+ ++ S + +++++G +++L+N +GI+ L P ++ EK + M+
Sbjct: 55 -TIKCDVGNRDQVKKSKEVVEKEFGRVDVLVNNAGIM----YLMPFEEFDE-EKYNKMI- 107
Query: 142 YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
++N G I PLLK+ G + N+++ G IG G Y +KA
Sbjct: 108 -KINLNGAIYTTYEFLPLLKLSKNG------AIVNIASNAG-IGTAAEGTTF-YAITKAG 158
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS 235
+ LT+ ++ E G+ V + PG V+TD++
Sbjct: 159 IIILTRRLAFELGKYGIRVNAVA--PGWVETDMT 190
|
Length = 255 |
| >gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-10
Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 27/209 (12%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
G +LV GA +GIG K L + + V+A R L+ R ++ + +D
Sbjct: 7 GKRALVTGAGKGIGRATVKALAKAGAR--VVAVSRTQADLDSLV----RECPGIEPVCVD 60
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
L+ E + S+ G ++LL+N + + +LQP +V K + +++VN
Sbjct: 61 LSDWDATEEALGSV----GPVDLLVNNAAVA----ILQP---FLEVTKEAFDRSFDVNVR 109
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
I V + ++ + G + N+S++ L Y ++KAAL+ LTK
Sbjct: 110 AVIHVSQIVARGMIARGVP-----GSIVNVSSQASQRA---LTNHTVYCSTKAALDMLTK 161
Query: 208 SVSVEFGRKKDPVICILLHPGTVDTDLSR 236
+++E G K V + +P V TD+ R
Sbjct: 162 VMALELGPHKIRVNSV--NPTVVMTDMGR 188
|
Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 244 |
| >gnl|CDD|236074 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-10
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 32/216 (14%)
Query: 27 KGGVSLVQGASRGIG----LEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLD 82
+G +L+ GA RGIG + AK+ + V R + + + ++
Sbjct: 6 QGKNALITGAGRGIGRAVAIALAKEGVN------VGLLARTEENLKAVAEEVEAYGVKVV 59
Query: 83 VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPET-TLNKVEKSSLMLA 141
+ D++ + A+ + +K + GS+++LIN +GI L+ + K+ + +LM
Sbjct: 60 IATADVSDYEEVTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGV 119
Query: 142 YEVN-AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKA 200
Y AV P M IER + N+S+ G G +Y ASK
Sbjct: 120 YYATRAVLP-----SM----------IERQSGDIINISSTAGQKGA---AVTSAYSASKF 161
Query: 201 ALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
+ LT+S+ E +K + L P TV TD++
Sbjct: 162 GVLGLTESLMQEV--RKHNIRVTALTPSTVATDMAV 195
|
Length = 239 |
| >gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 41/243 (16%)
Query: 21 SASVKW--------KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN-GATGLL 71
KW G V++V GA+ G+G E A L K V+ RN + G
Sbjct: 1 MKMTKWTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGAH--VVLAVRNLDKGKAAAA 58
Query: 72 DLKNRFPE-RLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL 130
+ P + + +LDLT +++ A+A +++ Y ++LLIN +G++ P +TT
Sbjct: 59 RITAATPGADVTLQELDLTSLASVRAAADALRAAYPRIDLLINNAGVMYTPK----QTTA 114
Query: 131 NKVEKSSLMLAYEVNAVGP----ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-- 184
+ E L + N +G L++ LL V G+ R V V + +I
Sbjct: 115 DGFE-----LQFGTNHLGHFALTGLLLDR---LLPVPGS---RVVTVSSGGHRIRAAIHF 163
Query: 185 ----GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR 240
+ R +Y SK A T + I + HPG +T+L R
Sbjct: 164 DDLQWERRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL----AR 219
Query: 241 NVP 243
N+P
Sbjct: 220 NLP 222
|
Length = 306 |
| >gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-09
Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 43/219 (19%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
G V++V G + GIG A+ K + V R+ + A L L D
Sbjct: 15 GKVAVVTGGASGIGHAIAELFAAKGAR--VALLDRSEDVAEVAAQLL---GGNAKGLVCD 69
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQP---------ETTLNKVEKSSL 138
++ ++EA+ ++ +G +++L+N++G+ +L P + T++ K S
Sbjct: 70 VSDSQSVEAAVAAVISAFGRIDILVNSAGVA----LLAPAEDVSEEDWDKTIDINLKGSF 125
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
++A AVG +HM + GG I NL+++ G + L +Y AS
Sbjct: 126 LMA---QAVG-----RHM---IAAGGGKI-------VNLASQAGVVA---LERHVAYCAS 164
Query: 199 KAALNQLTKSVSVEFGRKKDPVICI-LLHPGTVDTDLSR 236
KA + +TK +++E+G I + + P V T+L +
Sbjct: 165 KAGVVGMTKVLALEWGPYG---ITVNAISPTVVLTELGK 200
|
Length = 255 |
| >gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 30/214 (14%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIA----TCRNPNGATGLLDLKNRFPERLDV 83
G V+ V GASRGIG A L K V+A + + A L E ++
Sbjct: 3 GKVAFVTGASRGIGRAIA-LRLAKAGATVVVAAKTASEGDNGSAKSLPGTIEETAEEIEA 61
Query: 84 -------LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKS 136
+ +D+ E + A ++ +++G L++L+N +G + + V
Sbjct: 62 AGGQALPIVVDVRDEDQVRALVEATVDQFGRLDILVNNAGAIWLSLVEDTPA-------K 114
Query: 137 SLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR 196
L VN G L+ + P + G G +++ +L G + Y
Sbjct: 115 RFDLMQRVNLRGTYLLSQAALPHMVKAGQGHILNISPPLSLRPARGDVA---------YA 165
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVICILLHPGTV 230
A KA +++LT ++ E R + L P T
Sbjct: 166 AGKAGMSRLTLGLAAELRRHG--IAVNSLWPSTA 197
|
This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|180617 PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-09
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 44/213 (20%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT--GL-LDLKNRFPERL 81
++ L+ GA+ GIGL A+ L GA G+ K
Sbjct: 2 EFMTKTVLITGAASGIGLAQARAFLA--------------QGAQVYGVDKQDKPDLSGNF 47
Query: 82 DVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQP--ETTLNKVEKSSLM 139
LQLDL+ + + + + S+++L N +GIL + +P +T+L + +
Sbjct: 48 HFLQLDLSDD------LEPLFDWVPSVDILCNTAGIL---DDYKPLLDTSLEEWQH---- 94
Query: 140 LAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASK 199
++ N L+ + P + +GI ++ +A+ A G GG +Y ASK
Sbjct: 95 -IFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVA--G-------GGGAAYTASK 144
Query: 200 AALNQLTKSVSVEFGRKKDPVICILLHPGTVDT 232
AL TK +++++ + V I PG V T
Sbjct: 145 HALAGFTKQLALDYAKDGIQVFGIA--PGAVKT 175
|
Length = 235 |
| >gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 38/200 (19%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT-GLLDLKNRFPE--RLDV 83
+G + +V G S GIGL K+LL NGA D+ +
Sbjct: 8 QGKIIIVTGGSSGIGLAIVKELLA--------------NGANVVNADIHGGDGQHENYQF 53
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLA-- 141
+ D++ + + I EK+G ++ L+N +GI +IP +L E K L
Sbjct: 54 VPTDVSSAEEVNHTVAEIIEKFGRIDGLVNNAGI-NIPRLLVDE----KDPAGKYELNEA 108
Query: 142 -----YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR 196
+ +N G L+ + ++ + +++ V+ N+S+ G G G Y
Sbjct: 109 AFDKMFNINQKGVFLMSQAVARQM------VKQHDGVIVNMSSEAGLEGSE---GQSCYA 159
Query: 197 ASKAALNQLTKSVSVEFGRK 216
A+KAALN T+S + E G+
Sbjct: 160 ATKAALNSFTRSWAKELGKH 179
|
Length = 266 |
| >gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-09
Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE---RLDVL 84
G V+LV GAS GIG A+ L + IA R L L + + VL
Sbjct: 3 GKVALVTGASSGIGEATARALAAEGAA-VAIAARR----VDRLEALADELEAEGGKALVL 57
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
+LD+T E ++A+ + E G L++L+N +GI+ +L P + + + ++ +
Sbjct: 58 ELDVTDEQQVDAAVERTVEALGRLDILVNNAGIM----LLGPVEDADTTDWTRMI---DT 110
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N +G + P + R+ + N+S+ G + Y A+K +N
Sbjct: 111 NLLGLMYTTHAALPHHLL------RNKGTIVNISSVAGRVAVRNSAV---YNATKFGVNA 161
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
++ + E + V +++ PGTVDT+L
Sbjct: 162 FSEGLRQEV--TERGVRVVVIEPGTVDTEL 189
|
CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5 | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 3e-09
Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 24/207 (11%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD-LKNRFPERLDVLQLDLTV 90
L+ GAS GIG A++ + K +I T R L D L +FP ++ LQLD++
Sbjct: 4 LITGASSGIGEATARRFAKAGAK--LILTGRRAERLQELADELGAKFPVKVLPLQLDVSD 61
Query: 91 ESTIEASAKSIKEKYGSLNLLINASGI-LSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
+IEA+ +++ E++ +++L+N +G+ L + E L E M+ + N G
Sbjct: 62 RESIEAALENLPEEFRDIDILVNNAGLALGLDPA--QEADLEDWET---MI--DTNVKGL 114
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-GDNRLGGWHSYRASKAALNQLTKS 208
+ V + + P++ I R+ + NL GSI G G + Y A+KAA+ Q + +
Sbjct: 115 LNVTRLILPIM------IARNQGHIINL----GSIAGRYPYAGGNVYCATKAAVRQFSLN 164
Query: 209 VSVEFGRKKDPVICILLHPGTVDTDLS 235
+ + V I PG V+T+ S
Sbjct: 165 LRKDLIGTGIRVTNI--EPGLVETEFS 189
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|222222 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-09
Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 25/187 (13%)
Query: 35 GASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD-LKNRFPERLDVLQLDLTVEST 93
I AK E+ + V+ T P G +D L P DV+ LD+T +
Sbjct: 3 ADDNSIAWAIAKAAAEEGAE--VVLTTWPPALRMGAVDELAKELPA--DVIPLDVTSDED 58
Query: 94 IEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVI 153
I+ + +KE G ++ L+++ + +P + + + A +++A I +
Sbjct: 59 IDELFEKVKEDGGKIDFLVHSIAMSPEIRKGKPYLDTS---REGFLKALDISAYSFISLA 115
Query: 154 KHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR---ASKAALNQLTKSVS 210
K PL+ GG+ +VA + I R+ + Y +KAAL L + ++
Sbjct: 116 KAAKPLMNEGGS-------IVA-----LSYIAAERV--FPGYGGMGVAKAALESLARYLA 161
Query: 211 VEFGRKK 217
E GRK
Sbjct: 162 YELGRKG 168
|
Length = 239 |
| >gnl|CDD|181044 PRK07577, PRK07577, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-09
Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 38/215 (17%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV 90
LV GA++GIGL + +L + G VI R+ FP L DL
Sbjct: 7 LVTGATKGIGLALSLRL---ANLGHQVIGIARSAIDD---------FPGEL--FACDLAD 52
Query: 91 ESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPI 150
A+ I E + ++ ++N GI ++P QP L K++ ++L Y++N +
Sbjct: 53 IEQTAATLAQINEIHP-VDAIVNNVGI-ALP---QP---LGKIDLAALQDVYDLNVRAAV 104
Query: 151 LVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVS 210
V + +K+ G + N+ +R +R SY A+K+AL T++ +
Sbjct: 105 QVTQAFLEGMKLREQG------RIVNICSRAIFGALDRT----SYSAAKSALVGCTRTWA 154
Query: 211 VEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEG 245
+E V + PG ++T+L F++ P G
Sbjct: 155 LELAEYGITVNAVA--PGPIETEL---FRQTRPVG 184
|
Length = 234 |
| >gnl|CDD|187615 cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 6e-09
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 25/189 (13%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNG-ATGLLDLKNRFPERLDVLQLD 87
V+LV GA++ IG A+ L + G V+ A L D N ++Q D
Sbjct: 2 VALVTGAAKRIGRAIAEALAAE---GYRVVVHYNRSEAEAQRLKDELNALRNSAVLVQAD 58
Query: 88 LTVESTIEASAKSIKEKYGSLNLLI-NASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
L+ + + +G ++L+ NAS P E + + +N
Sbjct: 59 LSDFAACADLVAAAFRAFGRCDVLVNNAS-------AFYPTPLGQGSE-DAWAELFGINL 110
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLS-ARVGSIGDNRLGGWHSYRASKAALNQL 205
P L+I+ + L G + N+ A D L G+ +Y SKAAL L
Sbjct: 111 KAPYLLIQAFARRLAGSRNG------SIINIIDAMT----DRPLTGYFAYCMSKAALEGL 160
Query: 206 TKSVSVEFG 214
T+S ++E
Sbjct: 161 TRSAALELA 169
|
Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 234 |
| >gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 8e-09
Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 33/187 (17%)
Query: 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE---RLDVLQ 85
G L+ G + G+GL A+ L + + A G +L + V
Sbjct: 1 GTVLITGGTGGLGLALARWLAAE--GARHLVLVSRRGPAPGAAELVAELEALGAEVTVAA 58
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVL-QPETTLNKVEKSSLMLAYEV 144
D+ + A ++ G L+ +++ +G+L + +V
Sbjct: 59 CDVADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERV--------LAP 110
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS---ARVGSIGDNRLGGWHSYRASKAA 201
G + + D+ S +GS G +Y A+ AA
Sbjct: 111 KVTGAWNLHELTRD----------LDLGAFVLFSSVAGVLGS------PGQANYAAANAA 154
Query: 202 LNQLTKS 208
L+ L +
Sbjct: 155 LDALAEH 161
|
This family contains a wide variety of dehydrogenases. Length = 167 |
| >gnl|CDD|235813 PRK06482, PRK06482, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 9e-09
Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 29/208 (13%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
+ GAS G G ++LL + D+ V AT R P+ L DLK R+ +RL VLQLD+T
Sbjct: 6 FITGASSGFGRGMTERLLARGDR--VAATVRRPDA---LDDLKARYGDRLWVLQLDVTDS 60
Query: 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPIL 151
+ + A G ++++++ +G + L+ + + + N +G I
Sbjct: 61 AAVRAVVDRAFAALGRIDVVVSNAGY----GLFGAAEELSDAQIRRQI---DTNLIGSIQ 113
Query: 152 VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSV 211
VI+ P L+ G G R V V S+ G I G+ Y A+K + ++V+
Sbjct: 114 VIRAALPHLRRQGGG--RIVQV----SSEGGQIA---YPGFSLYHATKWGIEGFVEAVAQ 164
Query: 212 E---FGRKKDPVICILLHPGTVDTDLSR 236
E FG + ++ PG T+
Sbjct: 165 EVAPFG-----IEFTIVEPGPARTNFGA 187
|
Length = 276 |
| >gnl|CDD|187621 cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), classical (c) SDR | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-08
Identities = 46/209 (22%), Positives = 97/209 (46%), Gaps = 26/209 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN--GATGLLDLKNRFPERLDVL 84
G +L+ G++RGIG FA+ + + + IA N AT +
Sbjct: 2 DGKTALITGSARGIGRAFAQAYVREGAR-VAIADI-NLEAARATAAEIGPAAC-----AI 54
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
LD+T +++I+ ++ +++GS+++L+N + + + ++ + + S + +
Sbjct: 55 SLDVTDQASIDRCVAALVDRWGSIDILVNNAALFDLAPIVD-------ITRESYDRLFAI 107
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N G + +++ ++ + G G + N++++ G G+ +G Y A+KAA+
Sbjct: 108 NVSGTLFMMQAVARAMIAQGRG-----GKIINMASQAGRRGEALVG---VYCATKAAVIS 159
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTD 233
LT+S + R V I PG VD +
Sbjct: 160 LTQSAGLNLIRHGINVNAIA--PGVVDGE 186
|
This bacterial subgroup includes Rhodobacter sphaeroides SDH, and other SDHs. SDH preferentially interconverts D-sorbitol (D-glucitol) and D-fructose, but also interconverts L-iditol/L-sorbose and galactitol/D-tagatose. SDH is NAD-dependent and is a dimeric member of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 254 |
| >gnl|CDD|180446 PRK06180, PRK06180, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-08
Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 28/188 (14%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
L+ G S G G A+ L + V+ T R+ D + P+R LD+T
Sbjct: 8 LITGVSSGFGRALAQAALAAGHR--VVGTVRSEAARA---DFEALHPDRALARLLDVTDF 62
Query: 92 STIEASAKSIKEKYGSLNLLINASGI--LSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
I+A + +G +++L+N +G E+ L ++ + +EVN G
Sbjct: 63 DAIDAVVADAEATFGPIDVLVNNAGYGHEGAIE----ESPLAEMRRQ-----FEVNVFGA 113
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
+ + K + P ++ R + N+++ G I + G Y SK AL +++S+
Sbjct: 114 VAMTKAVLPGMR------ARRRGHIVNITSMGGLIT---MPGIGYYCGSKFALEGISESL 164
Query: 210 SVE---FG 214
+ E FG
Sbjct: 165 AKEVAPFG 172
|
Length = 277 |
| >gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 32/212 (15%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
+G V+L+ GA+ GIG A++ L + + VIA P A + L
Sbjct: 5 QGKVALLTGAASGIGEAVAERYLAEGAR-VVIAD-IKPARARL---AALEIGPAAIAVSL 59
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T + +I+ + E++G +++L N + + + P + + + S + VN
Sbjct: 60 DVTRQDSIDRIVAAAVERFGGIDILFNNAALFD----MAP---ILDISRDSYDRLFAVNV 112
Query: 147 VGPIL----VIKHMSPLLKVGGTGIERDV-AVVANLSARVGSIGDNRLGGWHSYRASKAA 201
G V +HM +E+ + N++++ G G+ + Y A+KAA
Sbjct: 113 KGLFFLMQAVARHM----------VEQGRGGKIINMASQAGRRGEALVS---HYCATKAA 159
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
+ T+S ++ R V I PG VDT
Sbjct: 160 VISYTQSAALALIRHGINVNAIA--PGVVDTP 189
|
Length = 257 |
| >gnl|CDD|236209 PRK08265, PRK08265, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 41/193 (21%), Positives = 81/193 (41%), Gaps = 35/193 (18%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G V++V G + IG A+ L+ V + + + ER +
Sbjct: 5 AGKVAIVTGGATLIGAAVARALVAAG--ARVAIVDIDADNGAAVAA---SLGERARFIAT 59
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINAS------GILSIPNVLQPETTLNKVEKSSLML 140
D+T ++ IE + ++ ++G +++L+N + G+ S ++ +
Sbjct: 60 DITDDAAIERAVATVVARFGRVDILVNLACTYLDDGLAS--------------SRADWLA 105
Query: 141 AYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKA 200
A +VN V ++ + P L GG + N ++ + G W Y ASKA
Sbjct: 106 ALDVNLVSAAMLAQAAHPHLARGG-------GAIVNFTSISAKFA--QTGRW-LYPASKA 155
Query: 201 ALNQLTKSVSVEF 213
A+ QLT+S++++
Sbjct: 156 AIRQLTRSMAMDL 168
|
Length = 261 |
| >gnl|CDD|235712 PRK06138, PRK06138, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-08
Identities = 52/215 (24%), Positives = 87/215 (40%), Gaps = 27/215 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE--RLDVL 84
G V++V GA GIG AK L + V+A A + R
Sbjct: 4 AGRVAIVTGAGSGIGRATAK-LFAREGARVVVADRD----AEAAERVAAAIAAGGRAFAR 58
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVL-QPETTLNKVEKSSLMLAYE 143
Q D+ +EA + ++G L++L+N +G V+ E + V
Sbjct: 59 QGDVGSAEAVEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAV--------MR 110
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
VN G L K+ P+++ G G + N ++++ G G +Y ASK A+
Sbjct: 111 VNVGGVFLWAKYAIPIMQRQGGG------SIVNTASQLALAG---GRGRAAYVASKGAIA 161
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
LT++++++ V + PGT+DT R
Sbjct: 162 SLTRAMALDHATDGIRVNAVA--PGTIDTPYFRRI 194
|
Length = 252 |
| >gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-08
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 31/211 (14%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE-RLDVLQLDL 88
++LV GA RGIG A++LL + VIAT + N + F E ++ + +LD+
Sbjct: 4 IALVTGAKRGIGSAIARELLNDGYR--VIATYFSGNDCAKDWFEEYGFTEDQVRLKELDV 61
Query: 89 TVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ--PETTLNKVEKSSLMLAYEVNA 146
T + I+E+ G +++L+N +GI + +V + N V ++L + V
Sbjct: 62 TDTEECAEALAEIEEEEGPVDILVNNAGI-TRDSVFKRMSHQEWNDVINTNLNSVFNVTQ 120
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLS---ARVGSIGDNRLGGWHSYRASKAALN 203
+ M E+ + N+S G G +Y A+KA +
Sbjct: 121 ----PLFAAMC----------EQGYGRIINISSVNGLKGQFGQT------NYSAAKAGMI 160
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
TK+++ E R V CI PG + T +
Sbjct: 161 GFTKALASEGARYGITVNCIA--PGYIATPM 189
|
Length = 245 |
| >gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 4e-08
Identities = 48/212 (22%), Positives = 84/212 (39%), Gaps = 22/212 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK-NRFPERLDVLQ 85
KG V+LV G++ GIGL A+ L V+ + + + ++
Sbjct: 1 KGKVALVTGSTSGIGLGIARA-LAAAGANIVLNGFGDAAEIEAVRAGLAAKHGVKVLYHG 59
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEV 144
DL+ + IE + ++G +++L+N +GI + + P + + +
Sbjct: 60 ADLSKPAAIEDMVAYAQRQFGGVDILVNNAGIQHVAPIEDFPTEKWDAIIA--------L 111
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N + P +K G G ++A V L V S + +Y A+K +
Sbjct: 112 NLSAVFHTTRLALPHMKKQGWGRIINIASVHGL---VASANKS------AYVAAKHGVVG 162
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
LTK V++E V C + PG V T L
Sbjct: 163 LTKVVALETAGTG--VTCNAICPGWVLTPLVE 192
|
DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-08
Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 26/210 (12%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPER-LDVL-- 84
G +LV GA+RG+G FA+ L E V A +L
Sbjct: 7 GKRALVTGAARGLGAAFAEALAE--AGATVAFNDGL---AAEARELAAALEAAGGRAHAI 61
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
DL ++++ + G L+ L+N +GI + T L+ ++M V
Sbjct: 62 AADLADPASVQRFFDAAAAALGGLDGLVNNAGIT----NSKSATELDIDTWDAVM---NV 114
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N G L+++ P L+ G G +V NL++ G +LG +Y ASK A+
Sbjct: 115 NVRGTFLMLRAALPHLRDSGRG-----RIV-NLASDTALWGAPKLG---AYVASKGAVIG 165
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
+T+S++ E G + V I PG T+
Sbjct: 166 MTRSLARELGGRGITVNAIA--PGLTATEA 193
|
Length = 250 |
| >gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 4e-08
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 35/239 (14%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
KG V+LV GAS GIG A +L V+ + A +++ + +Q
Sbjct: 2 KGKVALVTGASSGIGKAIAIRLATAGAN-VVVNYRSKEDAAEEVVEEIKAVGGKAIAVQA 60
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D++ E + A +S +++G+L++L+N +G+ + E TL K +VN
Sbjct: 61 DVSKEEDVVALFQSAIKEFGTLDILVNNAGLQG--DASSHEMTLEDWNKVI-----DVNL 113
Query: 147 VGPILV----IKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
G L IK G + N+S+ I G +Y ASK +
Sbjct: 114 TGQFLCAREAIKRFRKSKIKG---------KIINMSSVHEKIP---WPGHVNYAASKGGV 161
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261
+TK+++ E+ K V I PG ++T ++ + LL++I
Sbjct: 162 KMMTKTLAQEYAPKGIRVNAI--APGAINTPINAE---------AWDDPEQRADLLSLI 209
|
GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|187618 cd05360, SDR_c3, classical (c) SDR, subgroup 3 | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-08
Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 28/209 (13%)
Query: 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDL 88
V ++ GAS GIG A E+ K + A R+ L + D+
Sbjct: 1 QVVVITGASSGIGRATALAFAERGAKVVLAA--RSAEALHELAREVRELGGEAIAVVADV 58
Query: 89 TVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVG 148
+ +E +A + E++G ++ +N +G+ + T E+ + ++VN +G
Sbjct: 59 ADAAQVERAADTAVERFGRIDTWVNNAGVAVFGRFE--DVT---PEEFRRV--FDVNYLG 111
Query: 149 PI----LVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHS-YRASKAALN 203
+ + H+ + GG I VGS+ R + Y ASK A+
Sbjct: 112 HVYGTLAALPHLRR--RGGGALIN------------VGSLLGYRSAPLQAAYSASKHAVR 157
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDT 232
T+S+ E P+ L+ P ++T
Sbjct: 158 GFTESLRAELAHDGAPISVTLVQPTAMNT 186
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 233 |
| >gnl|CDD|181305 PRK08226, PRK08226, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-08
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 20/210 (9%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVL 84
K G +L+ GA +GIG A+ ++ +P +L R V
Sbjct: 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLD--ISPEIEKLADELCGRGHRCTAV- 59
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
D+ +++ A+ K KEK G +++L+N +G+ + + L ++
Sbjct: 60 VADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRD-------FHIDI 112
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N G V K + P + I R + +S+ G + + G +Y +KAA+
Sbjct: 113 NIKGVWNVTKAVLPEM------IARKDGRIVMMSSVTGDMVAD--PGETAYALTKAAIVG 164
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
LTKS++VE+ + V I PG V T +
Sbjct: 165 LTKSLAVEYAQSGIRVNAI--CPGYVRTPM 192
|
Length = 263 |
| >gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-08
Identities = 55/224 (24%), Positives = 87/224 (38%), Gaps = 28/224 (12%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G +LV GA+ GIGL A+ L G V+ GA + + L
Sbjct: 1 GKTALVTGAASGIGLAIARALAAA---GANVVVNDFGEEGAEAAAKVAGDAGGSVIYLPA 57
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T E I + ++G L++L+N +GI + + + E ++A V
Sbjct: 58 DVTKEDEIADMIAAAAAEFGGLDILVNNAGIQHVAPIEEFPP-----EDWDRIIA--VML 110
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
I+ P +K G G ++A L V S + +Y A+K L LT
Sbjct: 111 TSAFHTIRAALPHMKKQGWGRIINIASAHGL---VASPFKS------AYVAAKHGLIGLT 161
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSR---PFQ---RNVPE 244
K +++E + + PG V T L Q R +PE
Sbjct: 162 KVLALEVAEHG--ITVNAICPGYVRTPLVEKQIADQAKTRGIPE 203
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. Length = 255 |
| >gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 8e-08
Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 49/219 (22%)
Query: 30 VSLVQGASRGIGLEFAKQLLEK---------NDKGCVIATCRNPNGATGLLDLKNRFPER 80
V+++ GAS GIG A L ++ + NG
Sbjct: 8 VAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKA----------- 56
Query: 81 LDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML 140
+D++ E ++ A IKE++G +++L N +G+ + ++ + + +
Sbjct: 57 -KAYHVDISDEQQVKDFASEIKEQFGRVDVLFNNAGV---------DNAAGRIHEYPVDV 106
Query: 141 AYEVNAV---GPILVIKHMSPL-LKVGGTGIERDVAVVANLSARVGSIGD-NRLGGWHSY 195
++ AV G L+ K + PL ++ GG+ I N S+ G D R G Y
Sbjct: 107 FDKIMAVDMRGTFLMTKMLLPLMMEQGGSII--------NTSSFSGQAADLYRSG----Y 154
Query: 196 RASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
A+K A+ TKS+++E+GR I PGT++T L
Sbjct: 155 NAAKGAVINFTKSIAIEYGRDGIRANAI--APGTIETPL 191
|
Length = 272 |
| >gnl|CDD|187666 cd09806, type1_17beta-HSD-like_SDR_c, human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 8e-08
Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 22/220 (10%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLD-LKNRFPERLDVLQLD 87
V L+ G S GIGL A +L K V AT R+ L + L+ LQLD
Sbjct: 2 VVLITGCSSGIGLHLAVRLASDPSKRFKVYATMRDLKKKGRLWEAAGALAGGTLETLQLD 61
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
+ ++ A+ + + E +++L+ +G+ +L P L++ +S+ +VN
Sbjct: 62 VCDSKSVAAAVERVTE--RHVDVLVCNAGV----GLLGPLEALSEDAMASVF---DVNVF 112
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
G + +++ P +K G+G + V +++ G ++ Y ASK AL L +
Sbjct: 113 GTVRMLQAFLPDMKRRGSG---RILVTSSVGGLQGLPFND------VYCASKFALEGLCE 163
Query: 208 SVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL 247
S++V+ V L+ G V T + E
Sbjct: 164 SLAVQL--LPFNVHLSLIECGPVHTAFMEKVLGSPEEVLD 201
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-08
Identities = 48/219 (21%), Positives = 87/219 (39%), Gaps = 26/219 (11%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE----RLDV 83
L+ G S G+G A +L D VI +P D E +
Sbjct: 6 SRRVLITGGSGGLGRAIAVRL--AADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALG 63
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYE 143
L D+ + A+ + E++G L++L+N +GI + E ++ + + +
Sbjct: 64 LAFDVRDFAATRAALDAGVEEFGRLDILVNNAGI--ATDAAFAELSIEEWDD-----VID 116
Query: 144 VNAVGPILVIKH-MSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
VN G V + + P+++ G + N+++ G G+ G +Y ASKA L
Sbjct: 117 VNLDGFFNVTQAALPPMIRARRGG------RIVNIASVAGVRGN---RGQVNYAASKAGL 167
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTD-LSRPFQR 240
LTK+++ E + V + PG ++T
Sbjct: 168 IGLTKTLANELAPRGITVNAV--APGAINTPMADNAAPT 204
|
Length = 249 |
| >gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-08
Identities = 56/227 (24%), Positives = 85/227 (37%), Gaps = 29/227 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G V+++ GAS GIG AK + K V+ R L+ L
Sbjct: 5 NGKVAIITGASSGIGRAAAKLFAREGAK--VVVGARRQAELDQLVAEIRAEGGEAVALAG 62
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGIL----SIPNVLQPETTLNKVEKSSLMLAY 142
D+ E+ +A E++G L++ N +G L + + +
Sbjct: 63 DVRDEAYAKALVALAVERFGGLDIAFNNAGTLGEMGPVAEM--SLEGWRET--------L 112
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG-SIGDNRLGGWHSYRASKAA 201
N L KH P + G G + S VG + G G +Y ASKA
Sbjct: 113 ATNLTSAFLGAKHQIPAMLARGGG------SLIFTSTFVGHTAG---FPGMAAYAASKAG 163
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLF 248
L LT+ ++ E+G + V +L PG DT + R + PE F
Sbjct: 164 LIGLTQVLAAEYGAQGIRVNALL--PGGTDTPMGRAMG-DTPEALAF 207
|
Length = 254 |
| >gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 53/226 (23%), Positives = 88/226 (38%), Gaps = 24/226 (10%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDLKNRFPERLDVLQL 86
G V+LV AS GIGL A+ L +G +A C RN + +
Sbjct: 1 GKVALVTAASSGIGLAIARALA---REGARVAICARNRENLERAASELRAGGAGVLAVVA 57
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
DLT I+ + + +G +++L+N +G E T + A+++
Sbjct: 58 DLTDPEDIDRLVEKAGDAFGRVDILVNNAGGPPPGPFA--ELTDEDWLE-----AFDLKL 110
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR-LGGWHSYRASKAALNQL 205
+ I +++ + P +K G G +V S V N L ++A L L
Sbjct: 111 LSVIRIVRAVLPGMKERGWG-----RIVNISSLTVKEPEPNLVLSN-----VARAGLIGL 160
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKE 251
K++S E V +L PG +DT+ R E + + E
Sbjct: 161 VKTLSRELAPDGVTVNSVL--PGYIDTERVRRLLEARAEKEGISVE 204
|
This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|235933 PRK07097, PRK07097, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 26/222 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDV--L 84
KG ++L+ GAS GIG AK + V GL + ++
Sbjct: 9 KGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDINQELVDKGLAAYRE---LGIEAHGY 64
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILS-IPNVLQPETTLNKVEKSSLMLAYE 143
D+T E ++A I+++ G +++L+N +GI+ IP + +V +
Sbjct: 65 VCDVTDEDGVQAMVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQV--------ID 116
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
++ P +V K + P + I++ + N+ + + +G + Y A+K L
Sbjct: 117 IDLNAPFIVSKAVIPSM------IKKGHGKIINICSMMSELGRETVSA---YAAAKGGLK 167
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEG 245
LTK+++ E+G + C + PG + T + P + +G
Sbjct: 168 MLTKNIASEYGEAN--IQCNGIGPGYIATPQTAPLRELQADG 207
|
Length = 265 |
| >gnl|CDD|180773 PRK06949, PRK06949, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-07
Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 46/229 (20%)
Query: 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPER-- 80
S+ +G V+LV GAS G+G FA+ L + K V+A+ R L +L+
Sbjct: 4 SINLEGKVALVTGASSGLGARFAQVLAQAGAK-VVLASRR----VERLKELRAEIEAEGG 58
Query: 81 -LDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETT--LNKVEKSS 137
V+ LD+T +I+A+ + + G++++L+N SG+ TT L V +
Sbjct: 59 AAHVVSLDVTDYQSIKAAVAHAETEAGTIDILVNNSGV---------STTQKLVDVTPAD 109
Query: 138 LMLAYEVNAVGPILVI----KHM------SPLLKVGGTGIERDVAVVANLSARVGSIGDN 187
++ N G V K M + K GG I ++A VA L + IG
Sbjct: 110 FDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRII--NIASVAGLRV-LPQIG-- 164
Query: 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPV--ICILLHPGTVDTDL 234
Y SKAA+ +T+++++E+GR V IC PG +DT++
Sbjct: 165 ------LYCMSKAAVVHMTRAMALEWGRHGINVNAIC----PGYIDTEI 203
|
Length = 258 |
| >gnl|CDD|212496 cd11730, Tthb094_like_SDR_c, Tthb094 and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-07
Identities = 56/218 (25%), Positives = 85/218 (38%), Gaps = 36/218 (16%)
Query: 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV 90
+L+ GA+ GIG A+ L ++ + R+ A L L D+
Sbjct: 1 ALILGATGGIGRALARAL--AGRGWRLLLSGRD---AGALAGLAAEVGALARPA--DVAA 53
Query: 91 ESTIEASAKSIKEKYGSLNLLINASG-ILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
E + A A+ + G L+LL+ A+G IL P T + + N G
Sbjct: 54 ELEVWALAQEL----GPLDLLVYAAGAILGKPLA---RTKPAAWRRIL-----DANLTGA 101
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
LV+KH LL G + L A + L G +Y A+KAAL +
Sbjct: 102 ALVLKHALALLAAGARLVF--------LGAYPELV---MLPGLSAYAAAKAALEAYVEVA 150
Query: 210 SVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL 247
E + + ++ P VDT L P R +P+G L
Sbjct: 151 RKEV---RGLRLTLVR-PPAVDTGLWAPPGR-LPKGAL 183
|
Tthb094 from Thermus Thermophilus is a classical SDR which binds NADP. Members of this subgroup contain the YXXXK active site characteristic of SDRs. Also, an upstream Asn residue of the canonical catalytic tetrad is partially conserved in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 206 |
| >gnl|CDD|235627 PRK05854, PRK05854, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-07
Identities = 59/222 (26%), Positives = 106/222 (47%), Gaps = 28/222 (12%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NGATGLLDLKNRFPE-RLDVLQ 85
G ++V GAS G+GL A++L + VI RN G + ++ P+ +L +
Sbjct: 14 GKRAVVTGASDGLGLGLARRLAAAGAE--VILPVRNRAKGEAAVAAIRTAVPDAKLSLRA 71
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
LDL+ +++ A + ++ + ++LLIN +G+++ P + +TT + E L + N
Sbjct: 72 LDLSSLASVAALGEQLRAEGRPIHLLINNAGVMTPP---ERQTTADGFE-----LQFGTN 123
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
+G + H+ PLL+ G V ++++AR G+I + L SY + A +Q
Sbjct: 124 HLGHFALTAHLLPLLRAGRA----RVTSQSSIAARRGAINWDDLNWERSYAGMR-AYSQ- 177
Query: 206 TKSVSVEFGRKKD--------PVICILLHPGTVDTDL--SRP 237
+K F + D + L HPG T+L +RP
Sbjct: 178 SKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLLAARP 219
|
Length = 313 |
| >gnl|CDD|187624 cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 56/209 (26%), Positives = 87/209 (41%), Gaps = 30/209 (14%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN--GATGLLDLKNRFPERLDVLQLD 87
V+++ GA++GIG A++L G I A + + + D
Sbjct: 4 VAIITGAAQGIGRAIAERLAAD---GFNIVLADLNLEEAAKSTIQEISEAGYNAVAVGAD 60
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEVNA 146
+T + +EA EK+GS ++++N +GI I +L E L KV Y VN
Sbjct: 61 VTDKDDVEALIDQAVEKFGSFDVMVNNAGIAPITPLLTITEEDLKKV--------YAVNV 112
Query: 147 VGPILVIKHMS-PLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G + I+ + K+G G + N S+ G G LG +Y ASK A+ L
Sbjct: 113 FGVLFGIQAAARQFKKLGHGG------KIINASSIAGVQGFPNLG---AYSASKFAVRGL 163
Query: 206 TKSVSVEFGRKKDPV--ICILLHPGTVDT 232
T++ + E K V PG V T
Sbjct: 164 TQTAAQELAPKGITVNAYA----PGIVKT 188
|
2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 19/187 (10%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL-DLKNRF-PERLDVLQLD 87
V+ V G + GIG E A++L + V+ N A + ++ +F R L++D
Sbjct: 416 VAFVTGGAGGIGRETARRLA--AEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMD 473
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
+T E ++A+ + YG +++++N +GI + ETTL L ++ A
Sbjct: 474 VTDEQAVKAAFADVALAYGGVDIVVNNAGIATSSPFE--ETTL-----QEWQLNLDILAT 526
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
G LV + ++ G G ++ +A+ +A + +Y A+KAA L +
Sbjct: 527 GYFLVAREAFRQMREQGLG--GNIVFIASKNAVYAGKNAS------AYSAAKAAEAHLAR 578
Query: 208 SVSVEFG 214
++ E G
Sbjct: 579 CLAAEGG 585
|
Length = 676 |
| >gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11 | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 56/220 (25%), Positives = 90/220 (40%), Gaps = 38/220 (17%)
Query: 27 KGGVSLVQGASRGIG----LEFAKQLLEKNDKGCVIA-TCRNPNG--ATGLLDLKNRFPE 79
G V+++ G+S GIG + FA+ G +A T R+ T L+ E
Sbjct: 2 SGKVAIITGSSSGIGAGTAILFARL-------GARLALTGRDAERLEETRQSCLQAGVSE 54
Query: 80 -RLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVL--QPETTLNKVEKS 136
++ ++ DLT E + + K+G L++L+N +GIL Q +KV
Sbjct: 55 KKILLVVADLTEEEGQDRIISTTLAKFGRLDILVNNAGIL-AKGGGEDQDIEEYDKVMNL 113
Query: 137 SLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR 196
+L + L + H L+K G + N+S+ G G Y
Sbjct: 114 NLRAVIYLTK----LAVPH---LIKTKGE--------IVNVSSVAGG---RSFPGVLYYC 155
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
SKAAL+Q T+ ++E K V + PG + T R
Sbjct: 156 ISKAALDQFTRCTALELAPKGVRVNSV--SPGVIVTGFHR 193
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 253 |
| >gnl|CDD|135765 PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-07
Identities = 48/215 (22%), Positives = 91/215 (42%), Gaps = 21/215 (9%)
Query: 19 SASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP 78
S +++ G +++ GA GIG E A V+ + N + A ++D +
Sbjct: 2 FNSDNLRLDGKCAIITGAGAGIGKEIAITFATAG--ASVVVSDINADAANHVVDEIQQLG 59
Query: 79 ERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL 138
+ + D+T E + A A K G +++L+N +G P +
Sbjct: 60 GQAFACRCDITSEQELSALADFALSKLGKVDILVNNAGGGGPKPFDMPMADFRR------ 113
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
AYE+N + + ++P ++ G G V+ +++ +N+ SY +S
Sbjct: 114 --AYELNVFSFFHLSQLVAPEMEKNGGG------VILTITSMAA---ENKNINMTSYASS 162
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
KAA + L ++++ + G K V I PG + TD
Sbjct: 163 KAAASHLVRNMAFDLGEKNIRVNGIA--PGAILTD 195
|
Length = 255 |
| >gnl|CDD|183719 PRK12747, PRK12747, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 4e-07
Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 31/217 (14%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT---CRNPNGATGLLDLKNRFPERLDV 83
KG V+LV GASRGIG AK+L ND G ++A R + ++++ +
Sbjct: 3 KGKVALVTGASRGIGRAIAKRL--AND-GALVAIHYGNRKEEAEETVYEIQSNGGSAFSI 59
Query: 84 ---LQLDLTVESTIEASAKSIKEKYGS--LNLLINASGILSIPNVLQPETTLNKVEKSSL 138
L+ VE+ + ++ + GS ++LIN +GI P ETT ++
Sbjct: 60 GANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIG--PGAFIEETTEQFFDR--- 114
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
VNA P +I+ L RD + + N+S+ I L + +Y +
Sbjct: 115 --MVSVNAKAPFFIIQQALSRL--------RDNSRIINISSAATRIS---LPDFIAYSMT 161
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS 235
K A+N +T +++ + G + V IL PG + TD++
Sbjct: 162 KGAINTMTFTLAKQLGARGITVNAIL--PGFIKTDMN 196
|
Length = 252 |
| >gnl|CDD|180771 PRK06947, PRK06947, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-07
Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 14/203 (6%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
L+ GASRGIG A L I R+ A D R V+ D+ E
Sbjct: 6 LITGASRGIGRATAV-LAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANE 64
Query: 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPIL 151
+ + A +++ +G L+ L+N +GI++ P L ++ + L ++ N +G L
Sbjct: 65 ADVIAMFDAVQSAFGRLDALVNNAGIVA------PSMPLADMDAARLRRMFDTNVLGAYL 118
Query: 152 VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSV 211
+ + L G + V+++++R+GS + + Y SK A++ LT ++
Sbjct: 119 CAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNE-----YVDYAGSKGAVDTLTLGLAK 173
Query: 212 EFGRKKDPVICILLHPGTVDTDL 234
E G V + PG ++T++
Sbjct: 174 ELGPHGVRVNAV--RPGLIETEI 194
|
Length = 248 |
| >gnl|CDD|187638 cd08933, RDH_SDR_c, retinal dehydrogenase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 6e-07
Identities = 59/240 (24%), Positives = 99/240 (41%), Gaps = 21/240 (8%)
Query: 20 ASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL-LDLKNRFP 78
++ +++ V +V G SRGIG + +E K V+ R L +L P
Sbjct: 1 MASGLRYADKVVIVTGGSRGIGRGIVRAFVENGAK--VVFCARGEAAGQALESELNRAGP 58
Query: 79 ERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL 138
+ D+T E I+ E++G ++ L+N +G P T ++
Sbjct: 59 GSCKFVPCDVTKEEDIKTLISVTVERFGRIDCLVNNAGWHP------PHQTTDETSAQEF 112
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
+N + L K+ P L+ + + NLS+ VGSIG + Y A+
Sbjct: 113 RDLLNLNLISYFLASKYALPHLR-------KSQGNIINLSSLVGSIGQKQAA---PYVAT 162
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLL 258
K A+ +TK+++V+ R V CI PG + T L P+ KE + +LL
Sbjct: 163 KGAITAMTKALAVDESRYGVRVNCI--SPGNIWTPLWEELAAQTPDTLATIKEGELAQLL 220
|
These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 261 |
| >gnl|CDD|180408 PRK06114, PRK06114, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-07
Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 28/230 (12%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKN-DKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G V+ V GA GIG A L + D R +G + R +
Sbjct: 8 GQVAFVTGAGSGIGQRIAIGLAQAGADVALF--DLRTDDGLAETAEHIEAAGRRAIQIAA 65
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T ++ + A+ + + G+L L +NA+GI + P + + + ++M ++N
Sbjct: 66 DVTSKADLRAAVARTEAELGALTLAVNAAGIANA----NPAEEMEEEQWQTVM---DINL 118
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G L + + + G G ++V N+++ G I + L H Y ASKA + L+
Sbjct: 119 TGVFLSCQAEARAMLENGGG-----SIV-NIASMSGIIVNRGLLQAH-YNASKAGVIHLS 171
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDL-SRP--------FQRNVPEGKL 247
KS+++E+ + V I PG T + +RP F+ P ++
Sbjct: 172 KSLAMEWVGRGIRVNSI--SPGYTATPMNTRPEMVHQTKLFEEQTPMQRM 219
|
Length = 254 |
| >gnl|CDD|187642 cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-07
Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 24/193 (12%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVL 84
+++G V +V GA++GIG A++L + V+ R+ L ++ V
Sbjct: 1 RFEGKVVVVTGAAQGIGRGVAERLAGEG--ARVLLVDRSELVHEVLAEILAAGDAAH-VH 57
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASG--ILSIPNVLQPETTLNKVEKSSLMLAY 142
DL + + ++ E++G +++LIN G I + P E + + SL
Sbjct: 58 TADLETYAGAQGVVRAAVERFGRVDVLINNVGGTIWAKPYEHYEEEQIEAEIRRSLFPTL 117
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
V+ HM +ER V+ N+S+ + + G R+ Y A+K +
Sbjct: 118 WCCRA----VLPHM----------LERQQGVIVNVSS-IATRGIYRI----PYSAAKGGV 158
Query: 203 NQLTKSVSVEFGR 215
N LT S++ E R
Sbjct: 159 NALTASLAFEHAR 171
|
DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256 |
| >gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8 | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 20/205 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL-LDLKNRFPERLDVLQ 85
+ + L+ GA+ IG F K LL +I N L +L N + R+ L+
Sbjct: 1 EDKIILITGAAGLIGKAFCKALLSAG--ARLILADINAPALEQLKEELTNLYKNRVIALE 58
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
LD+T + +I+ +S EK+G +++LIN + P+ + + VN
Sbjct: 59 LDITSKESIKELIESYLEKFGRIDILINNAY----PSPKVWGSRFEEFPYEQWNEVLNVN 114
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN----RLGGWHS---YRAS 198
G L + L K G G + N+++ G I + +S Y
Sbjct: 115 LGGAFLCSQAFIKLFKKQGKG------SIINIASIYGVIAPDFRIYENTQMYSPVEYSVI 168
Query: 199 KAALNQLTKSVSVEFGRKKDPVICI 223
KA + LTK ++ + V I
Sbjct: 169 KAGIIHLTKYLAKYYADTGIRVNAI 193
|
This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|236116 PRK07856, PRK07856, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-07
Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 32/211 (15%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDLKNRFPERLDVLQ 85
G V LV G +RGIG A+ L G + C R +
Sbjct: 5 TGRVVLVTGGTRGIGAGIARAFL---AAGATVVVCGRRAPETVD--------GRPAEFHA 53
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
D+ + A +I E++G L++L+N +G P L E + EK E+N
Sbjct: 54 ADVRDPDQVAALVDAIVERHGRLDVLVNNAG--GSPYALAAEASPRFHEK-----IVELN 106
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLG-GWHSYRASKAALNQ 204
+ P+LV + + +++ G + N +GS+ R G +Y A+KA L
Sbjct: 107 LLAPLLVAQAANAVMQQQPGG-----GSIVN----IGSVSGRRPSPGTAAYGAAKAGLLN 157
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLS 235
LT+S++VE+ K V + G V T+ S
Sbjct: 158 LTRSLAVEWAPK---VRVNAVVVGLVRTEQS 185
|
Length = 252 |
| >gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-07
Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 21/231 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
K V+++ G + +G A+ L + K V A RN + R L
Sbjct: 4 KNKVAVITGGTGVLGGAMARALAQAGAK--VAALGRNQEKGDKVAKEITALGGRAIALAA 61
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGIL-----SIPNVLQPETTLNKVE--KSSLM 139
D+ +++E + + I ++G++++LIN +G + P +PET N + +
Sbjct: 62 DVLDRASLERAREEIVAQFGTVDILINGAGGNHPDATTDPEHYEPETEQNFFDLDEEGWE 121
Query: 140 LAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASK 199
+++N G L P G +E+ + N+S+ ++ Y A+K
Sbjct: 122 FVFDLNLNGSFL------PSQVFGKDMLEQKGGSIINISSMNAFSPLTKVPA---YSAAK 172
Query: 200 AALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTK 250
AA++ T+ ++VEF V I PG T +R N P+G +
Sbjct: 173 AAVSNFTQWLAVEFATTGVRVNAI--APGFFVTPQNRKLLIN-PDGSYTDR 220
|
D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 271 |
| >gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-07
Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 23/208 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G ++LV GASRGIG AK L ++ VI + R +G + D + + L
Sbjct: 7 TGKIALVTGASRGIGEAIAKLLAQQGAH--VIVSSRKLDGCQAVADAIVAAGGKAEALAC 64
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLI-NASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
+ I+A I+E++G L++L+ NA+ ++L +T L +K+ +VN
Sbjct: 65 HIGEMEQIDALFAHIRERHGRLDILVNNAAANPYFGHIL--DTDLGAFQKT-----VDVN 117
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHS-YRASKAALNQ 204
G + L+K G G +VA V +S G + Y +KAA+
Sbjct: 118 IRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSP----------GDFQGIYSITKAAVIS 167
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDT 232
+TK+ + E + L PG DT
Sbjct: 168 MTKAFAKECA--PFGIRVNALLPGLTDT 193
|
Length = 252 |
| >gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 8e-07
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 18/188 (9%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
G V+LV G++RG+G E A+ L V+ RN + + L D
Sbjct: 11 GQVALVTGSARGLGFEIARALAGAGAH--VLVNGRNAATLEAAVAALRAAGGAAEALAFD 68
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
+ E + A+ I ++G L++L+N G + L +++ +++ E + V
Sbjct: 69 IADEEAVAAAFARIDAEHGRLDILVNNVGA-------RDRRPLAELDDAAIRALLETDLV 121
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
PIL+ + + +K G G R +A+ + ++ +V GD Y A+K L L +
Sbjct: 122 APILLSRLAAQRMKRQGYG--RIIAITS-IAGQVARAGDA------VYPAAKQGLTGLMR 172
Query: 208 SVSVEFGR 215
+++ EFG
Sbjct: 173 ALAAEFGP 180
|
Length = 256 |
| >gnl|CDD|233441 TIGR01500, sepiapter_red, sepiapterin reductase | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 8e-07
Identities = 67/264 (25%), Positives = 106/264 (40%), Gaps = 48/264 (18%)
Query: 30 VSLVQGASRGIGLEFAKQLLE--KNDKGCVIATCRNPNGATGLLDLK-----NRFPERLD 82
V LV GASRG G A++L + K+ ++ + RN L LK R R+
Sbjct: 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARN---DEALRQLKAEIGAERSGLRVV 58
Query: 83 VLQLDLTVESTIEASAKSIKEKYGSLN----LLINASGIL----SIPNVLQPETTLNKVE 134
+ LDL E+ +E K+++E LLIN +G L L T +
Sbjct: 59 RVSLDLGAEAGLEQLLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYW 118
Query: 135 KSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHS 194
+L + + V+K G+ R V +++L A GW
Sbjct: 119 ALNLTSMLCLTS----SVLKAFKDS-----PGLNRTVVNISSLCAI------QPFKGWAL 163
Query: 195 YRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE---------- 244
Y A KAA + L + +++E K V + PG +DTD+ + + +
Sbjct: 164 YCAGKAARDMLFQVLALEE--KNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQEL 221
Query: 245 ---GKLFTKEFSVQKLLNIINNIK 265
GKL + S QKLL+++ K
Sbjct: 222 KAKGKLVDPKVSAQKLLSLLEKDK 245
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. Length = 256 |
| >gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 33/212 (15%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
+G +L+ G + GIGLE A+Q L + + V T R+P L + E V++
Sbjct: 5 QGKTALITGGTSGIGLETARQFLAEGAR--VAITGRDP---ASLEAARAELGESALVIRA 59
Query: 87 DLTVESTIEASAKSIKEKYGSLNLL-INASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
D + +A A+++ E +G L+ + INA G+ P L +++ ++ N
Sbjct: 60 DAGDVAAQKALAQALAEAFGRLDAVFINA-GVA----KFAP---LEDWDEAMFDRSFNTN 111
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVAN--LSARVGSIGDNRLGGWHSYRASKAALN 203
GP +I+ + PLL ++V N ++A +G + Y ASKAAL
Sbjct: 112 VKGPYFLIQALLPLLA-------NPASIVLNGSINAHIGMPNSS------VYAASKAALL 158
Query: 204 QLTKSVSVEF-GRKKDPVICILLHPGTVDTDL 234
L K++S E R + + PG V T L
Sbjct: 159 SLAKTLSGELLPRG---IRVNAVSPGPVQTPL 187
|
Length = 249 |
| >gnl|CDD|235725 PRK06179, PRK06179, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 25/144 (17%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
V+LV GAS GIG A++L G V T RNP A + +++L+
Sbjct: 3 NSKVALVTGASSGIGRATAEKLAR---AGYRVFGTSRNPARAAPI--------PGVELLE 51
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLA---Y 142
LD+T +++++A+ + + G +++L+N +G+ E+SS+ A +
Sbjct: 52 LDVTDDASVQAAVDEVIARAGRIDVLVNNAGV----------GLAGAAEESSIAQAQALF 101
Query: 143 EVNAVGPILVIKHMSPLLKVGGTG 166
+ N G + + + + P ++ G+G
Sbjct: 102 DTNVFGILRMTRAVLPHMRAQGSG 125
|
Length = 270 |
| >gnl|CDD|235736 PRK06196, PRK06196, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 56/238 (23%), Positives = 92/238 (38%), Gaps = 50/238 (21%)
Query: 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN-GATGLLDLKNRFPER 80
A G ++V G G+GLE + L + VI R P+ L + +
Sbjct: 20 AGHDLSGKTAIVTGGYSGLGLETTRALAQAGAH--VIVPARRPDVAREALAGI-----DG 72
Query: 81 LDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML 140
++V+ LDL ++ A A+ + +++LIN +G+++ PET +
Sbjct: 73 VEVVMLDLADLESVRAFAERFLDSGRRIDILINNAGVMAC-----PETRVGD----GWEA 123
Query: 141 AYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLG---------- 190
+ N +G ++ + P L G VVA + S G R
Sbjct: 124 QFATNHLGHFALVNLLWPALAAGAGA-----RVVA-----LSSAGHRRSPIRWDDPHFTR 173
Query: 191 ---GWHSYRASKAALNQLTKSVSVEFGR--KKDPVICILLHPGTVDTDLSRPFQRNVP 243
W +Y SK A N L +V + K V +HPG + T P QR++P
Sbjct: 174 GYDKWLAYGQSKTA-NAL---FAVHLDKLGKDQGVRAFSVHPGGILT----PLQRHLP 223
|
Length = 315 |
| >gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 58/215 (26%), Positives = 88/215 (40%), Gaps = 23/215 (10%)
Query: 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN--GATGLLDLKNRFPERLDVLQL 86
V++V GASRGIG A +L +G IA P+ AT ++ R Q
Sbjct: 2 PVAIVTGASRGIGRAIATELAA---RGFDIAINDLPDDDQATEVVAEVLAAGRRAIYFQA 58
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+ S EA E +G L+ L+N +GI +P L + + S +N
Sbjct: 59 DIGELSDHEALLDQAWEDFGRLDCLVNNAGIAV-----RPRGDLLDLTEDSFDRLIAINL 113
Query: 147 VGPIL----VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
GP V + M G R + V +++A + S NR Y SKA L
Sbjct: 114 RGPFFLTQAVARRMVEQPDR-FDGPHRSIIFVTSINAYLVSP--NR----GEYCISKAGL 166
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP 237
+ T+ ++ + V I PG + TD++ P
Sbjct: 167 SMATRLLAYRLADEGIAVHEI--RPGLIHTDMTAP 199
|
This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 255 |
| >gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 30/220 (13%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN---GATGLL--DLKNRFPERLD 82
G ++ GA+ GIG E A++L + VI CR+ A + D N +
Sbjct: 1 GKTVIITGANTGIGKETARELARRG--ARVIMACRDMAKCEEAAAEIRRDTLNH---EVI 55
Query: 83 VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAY 142
V LDL +I A A + L++LIN +G++ P + + +
Sbjct: 56 VRHLDLASLKSIRAFAAEFLAEEDRLDVLINNAGVMRCP---------YSKTEDGFEMQF 106
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
VN +G L+ + LLK + V++L+ + G I + L SY + A
Sbjct: 107 GVNHLGHFLLTNLLLDLLKKSAPS---RIVNVSSLAHKAGKINFDDLNSEKSYN-TGFAY 162
Query: 203 NQLTKSVSVEFGR------KKDPVICILLHPGTVDTDLSR 236
Q +K +V F R + V LHPG V T+L R
Sbjct: 163 CQ-SKLANVLFTRELARRLQGTGVTVNALHPGVVRTELGR 201
|
Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274 |
| >gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6 | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 57/256 (22%), Positives = 103/256 (40%), Gaps = 43/256 (16%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
L+ GAS GIG A++ + V R + L ++V LD+T E
Sbjct: 2 LITGASSGIGRALAREFAKAGYN--VALAARRTDRLDELKAELLNPNPSVEVEILDVTDE 59
Query: 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPIL 151
+ ++ + G L+L+I +G+ L K + + + N +G
Sbjct: 60 ERNQLVIAELEAELGGLDLVIINAGV-GKGTSL--GDLSFKAFRET----IDTNLLGAAA 112
Query: 152 VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSV 211
+++ P + G G + ++++++A G L G +Y ASKAAL+ L +S+
Sbjct: 113 ILEAALPQFRAKGRG---HLVLISSVAALRG------LPGAAAYSASKAALSSLAESLRY 163
Query: 212 EFGRKKDPVICILLHPGTVDTDL-----SRPFQRNVPEGKLFTKEFSVQKLLNIINNIKS 266
+ KK + +++PG +DT L + PF +V + ++ I IK
Sbjct: 164 DV--KKRGIRVTVINPGFIDTPLTANMFTMPFLMSVEQA--------AKR---IYKAIKK 210
Query: 267 HDNGKFFAWDGQEIPW 282
G PW
Sbjct: 211 ---GAAEPT----FPW 219
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239 |
| >gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 34/221 (15%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
G V+LV G ++G+G A+ E+ G VI G +L+ + + V Q D
Sbjct: 6 GKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFV-QAD 64
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
L+ + E +G L+ L+NA+G+ +L +T+ ++ A VN
Sbjct: 65 LSDVEDCRRVVAAADEAFGRLDALVNAAGLTDRGTIL--DTSPELFDR---HFA--VNVR 117
Query: 148 GPIL----VIKHMSPLLKVGGTGIERDVA-VVANLSARVGSIGDNRLGG---WHSYRASK 199
P IK M R + N +GS+ + GG +Y ASK
Sbjct: 118 APFFLMQEAIKLM----------RRRKAEGTIVN----IGSM--SAHGGQPFLAAYCASK 161
Query: 200 AALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR 240
AL LT++ + + ++ + L+ G + T+ QR
Sbjct: 162 GALATLTRNAA--YALLRNRIRVNGLNIGWMATEGEDRIQR 200
|
Length = 260 |
| >gnl|CDD|180371 PRK06057, PRK06057, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 51/209 (24%), Positives = 85/209 (40%), Gaps = 24/209 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G V+++ G GIGL A++L + V+ G ++ F +
Sbjct: 6 AGRVAVITGGGSGIGLATARRLAAEGAT-VVVGDIDPEAGKAAADEVGGLF------VPT 58
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T E + A + E YGS+++ N +GI + T L+ ++ +VN
Sbjct: 59 DVTDEDAVNALFDTAAETYGSVDIAFNNAGISPPEDDSILNTGLDAWQR-----VQDVNL 113
Query: 147 VGPILVIKHMSPLLKVGGTG-IERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
L K P + G G I + VA + + I SY ASK + +
Sbjct: 114 TSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSATSQI---------SYTASKGGVLAM 164
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDL 234
++ + V+F R+ V L PG V+T L
Sbjct: 165 SRELGVQFARQGIRVNA--LCPGPVNTPL 191
|
Length = 255 |
| >gnl|CDD|187614 cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 7e-06
Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 30/214 (14%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL-DLKNRFPERLDVLQL 86
G ++V GA+ GIG +A++L ++ VI R + +++ ++ +
Sbjct: 1 GTWAVVTGATDGIGKAYAEELAKRG--FNVILISRTQEKLDAVAKEIEEKYGVETKTIAA 58
Query: 87 DLTVESTIEASAKSIKEKYGSLN--LLINASGIL-SIPNVLQ--PETTLNKVEKSSLMLA 141
D + I + I+++ L+ +L+N GI SIP PE L + ++M
Sbjct: 59 DFSAGDDI---YERIEKELEGLDIGILVNNVGISHSIPEYFLETPEDELQDIINVNVMAT 115
Query: 142 YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
++ L++ M ++R + N+S+ G I L +Y ASKA
Sbjct: 116 LKMT----RLILPGM----------VKRKKGAIVNISSFAGLIPTPLLA---TYSASKAF 158
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS 235
L+ ++++ E+ + + L P V T +S
Sbjct: 159 LDFFSRALYEEYKSQG--IDVQSLLPYLVATKMS 190
|
This subgroup includes various 17-beta-hydroxysteroid dehydrogenases and 3-ketoacyl-CoA reductase, these are members of the SDR family, and contain the canonical active site tetrad and glycine-rich NAD-binding motif of the classical SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD type 12, encoded by HSD17B12) acts in fatty acid elongation; 17beta- hydroxysteroid dehydrogenases are isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. 17beta-estradiol dehydrogenase (aka 17beta-HSD type 1, encoded by HSD17B1) converts estrone to estradiol. Estradiol is the predominant female sex hormone. 17beta-HSD type 3 (aka testosterone 17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses the reduction of androstenedione to testosterone, it also accepts estrogens as substrates. This subgroup also contains a putative steroid dehydrogenase let-767 from Caenorhabditis elegans, mutation in which results in hypersensitivity to cholesterol limitation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239 |
| >gnl|CDD|187662 cd09761, A3DFK9-like_SDR_c, Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-06
Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 27/206 (13%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
G V++V G GIG + LE DK GA D L + D
Sbjct: 1 GKVAIVTGGGHGIGKQICLDFLEAGDKVVFADIDEE-RGA----DFAEAEGPNLFFVHGD 55
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
+ E+ ++ ++ EK G +++L+N + S + L + ++ VN
Sbjct: 56 VADETLVKFVVYAMLEKLGRIDVLVNNAARGSKGILS--SLLLEEWDRI-----LSVNLT 108
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARV-GSIGDNRLGGWHSYRASKAALNQLT 206
GP + ++ L ++ S R S D+ +Y ASK L LT
Sbjct: 109 GPYELSRYCRDELIKNKG------RIINIASTRAFQSEPDS-----EAYAASKGGLVALT 157
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDT 232
++++ G + + PG ++T
Sbjct: 158 HALAMSLGPD---IRVNCISPGWINT 180
|
This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 242 |
| >gnl|CDD|181126 PRK07806, PRK07806, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 9e-06
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
G +LV G+SRGIG + AK L V+ + A ++ R + D
Sbjct: 6 GKTALVTGSSRGIGADTAKILAGA-GAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGAD 64
Query: 88 LTVESTIEASAKSIKEKYGSLNLLI-NASG 116
LT E ++ A + +E++G L+ L+ NASG
Sbjct: 65 LTDEESVAALMDTAREEFGGLDALVLNASG 94
|
Length = 248 |
| >gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 36/214 (16%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD--LKNRFPERLDV-- 83
G V + G +RGIGL A+ L + + G LD L L +
Sbjct: 5 GKVVAITGGARGIGLATARALAALGARVAI-----------GDLDEALAKETAAELGLVV 53
Query: 84 -LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSI-PNVLQPETTLNKVEKSSLMLA 141
LD+T ++ A +++ G +++L+N +G++ + P + +P+ + +L
Sbjct: 54 GGPLDVTDPASFAAFLDAVEADLGPIDVLVNNAGVMPVGPFLDEPDAV------TRRIL- 106
Query: 142 YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
+VN G IL K +P + G G V VA+L+ ++ + G +Y ASK A
Sbjct: 107 -DVNVYGVILGSKLAAPRMVPRGRG---HVVNVASLAGKIP------VPGMATYCASKHA 156
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS 235
+ T + +E V +L P V+T+L
Sbjct: 157 VVGFTDAARLELRGTGVHVSVVL--PSFVNTELI 188
|
Length = 273 |
| >gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 28/211 (13%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIA-TCRNPNGATGL-LDLKNRFPERLDVLQ 85
G V ++ GAS GIG A +L G + RN L +L + E L V+
Sbjct: 1 GKVVIITGASEGIGRALAVRLARA---GAQLVLAARNETRLASLAQELADHGGEAL-VVP 56
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETT-LNKVEKSSLMLAYEV 144
D++ E ++ ++G +++L+N +GI E T L+ E+ +M V
Sbjct: 57 TDVSDAEACERLIEAAVARFGGIDILVNNAGITMWSRF--DELTDLSVFER--VM---RV 109
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG-DNRLGGWHSYRASKAALN 203
N +G + P LK +V +S+ G G R G Y ASK AL+
Sbjct: 110 NYLGAVYCTHAALPHLK------ASRGQIVV-VSSLAGLTGVPTRSG----YAASKHALH 158
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
S+ +E D V ++ PG V TD+
Sbjct: 159 GFFDSLRIEL--ADDGVAVTVVCPGFVATDI 187
|
Length = 263 |
| >gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 27/208 (12%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
V++V G + GIG A L + V+ GA + + + L+ ++T
Sbjct: 1 VAIVTGGAAGIGKAIAGTLAKAGAS--VVIADLKSEGAEAVAAAIQQAGGQAIGLECNVT 58
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVG- 148
E +EA K+ ++G + +L+N +G P T E A+++N
Sbjct: 59 SEQDLEAVVKATVSQFGGITILVNNAG-GGGPKPFDMPMTEEDFEW-----AFKLNLFSA 112
Query: 149 ---PILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
L HM K GG + N+S+ + R+ +Y +SKAA+N +
Sbjct: 113 FRLSQLCAPHM---QKAGG-------GAILNISSMSSENKNVRIA---AYGSSKAAVNHM 159
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTD 233
T++++ + G K V + PG V TD
Sbjct: 160 TRNLAFDLGPKGIRVNAVA--PGAVKTD 185
|
This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|237189 PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 55/252 (21%), Positives = 92/252 (36%), Gaps = 66/252 (26%)
Query: 28 GGVSLVQGASR--GIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP------- 78
++LV GASR GIG ++L K + T +P T + ++ P
Sbjct: 5 KKIALVTGASRLNGIGAAVCRRLAAKGID--IFFTYWSPYDKTMPWGMHDKEPVLLKEEI 62
Query: 79 ----ERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLIN--ASGILSIPNVLQPETTLNK 132
R + +++DL+ ++ E+ G ++LIN A T L +
Sbjct: 63 ESYGVRCEHMEIDLSQPYAPNRVFYAVSERLGDPSILINNAAYST---------HTRLEE 113
Query: 133 VEKSSLMLAYEVNAVGPILV----IKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188
+ L Y VN +L+ K K GG + NL++
Sbjct: 114 LTAEQLDKHYAVNVRATMLLSSAFAKQYDG--KAGGR--------IINLTS--------- 154
Query: 189 LGGWH--------SYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDT-----DLS 235
G +Y A+K A+ TKS++ E K V + +PG DT +L
Sbjct: 155 --GQSLGPMPDELAYAATKGAIEAFTKSLAPELAEKGITVNAV--NPGPTDTGWITEELK 210
Query: 236 RPFQRNVPEGKL 247
P+G++
Sbjct: 211 HHLVPKFPQGRV 222
|
Length = 256 |
| >gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLD-LKNRFPE-RLDV 83
+G V++V G S GIGL + LLE G +A C R+ L+ +FP RL
Sbjct: 7 EGRVAVVTGGSSGIGLATVELLLE---AGASVAICGRDEERLASAEARLREKFPGARLLA 63
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASG 116
+ D+ E+ + A A +++ ++G +++L+N +G
Sbjct: 64 ARCDVLDEADVAAFAAAVEARFGGVDMLVNNAG 96
|
Length = 265 |
| >gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 58/231 (25%), Positives = 94/231 (40%), Gaps = 34/231 (14%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVL 84
KG V+ + G GIG AK E G IA + ++ + R +
Sbjct: 2 KGKVAFITGGGTGIGKAIAKAFAEL---GASVAIAGRKPEVLEAAAEEISSATGGRAHPI 58
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLIN-ASGILSIPNVLQPETTLN-KVEKSSLMLAY 142
Q D+ +EA+ +++G +++LIN A+G N L P +L+ K+ +
Sbjct: 59 QCDVRDPEAVEAAVDETLKEFGKIDILINNAAG-----NFLAPAESLSPNGFKTVI---- 109
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGW---HSYRASK 199
+++ G K + L G + N+SA G HS A+K
Sbjct: 110 DIDLNGTFNTTKAVGKRLIEAKHG-----GSILNISATYA-----YTGSPFQVHS-AAAK 158
Query: 200 AALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTK 250
A ++ LT+S++VE+G V I PG + T +R P GK K
Sbjct: 159 AGVDALTRSLAVEWGPYGIRVNAIA--PGPIPTTEG--MERLAPSGKSEKK 205
|
TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 249 |
| >gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 17 TSSASASVKWK-GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN 75
+ A+AS K GGV LV G + GIG A+ L + ++ R+P +
Sbjct: 193 PAGAAASAPLKPGGVYLVTGGAGGIGRALARALARRYGAR-LVLLGRSPLPPEEEWKAQT 251
Query: 76 -----RFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGIL 118
R+ + D+T + + + ++E+YG+++ +I+A+G+L
Sbjct: 252 LAALEALGARVLYISADVTDAAAVRRLLEKVRERYGAIDGVIHAAGVL 299
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436 |
| >gnl|CDD|181297 PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 57/230 (24%), Positives = 94/230 (40%), Gaps = 55/230 (23%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQ- 85
K V ++ G ++G+G A+ L +K G +A L+DL E+L+
Sbjct: 4 KDKVIVITGGAQGLGRAMAEYLAQK---GAKLA----------LIDLNQ---EKLEEAVA 47
Query: 86 -------------LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPET--TL 130
++T E +EA+ I E +G LN LIN +GIL +++ +
Sbjct: 48 ECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVT 107
Query: 131 NKVEKSSLMLAYEVNAVGPIL----VIKHMSPLLKVGGTGIERDVAVVANLS--ARVGSI 184
+K+ +VN G L M G V+ N+S AR G++
Sbjct: 108 SKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKG---------VIINISSIARAGNM 158
Query: 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
G +Y ASKA + +T + + E R V I PG ++T++
Sbjct: 159 GQT------NYSASKAGVAAMTVTWAKELARYGIRVAAIA--PGVIETEM 200
|
Length = 253 |
| >gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9 | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 47/212 (22%), Positives = 73/212 (34%), Gaps = 29/212 (13%)
Query: 33 VQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-PERLDVLQLDLTVE 91
+ GA+ GIG E A V + GL L E + LD+T
Sbjct: 5 ITGAASGIGRETALLFARNGWF--VGLYDID---EDGLAALAAELGAENVVAGALDVTDR 59
Query: 92 STIEASAKSIKEKYGS-LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPI 150
+ A+ G L+ L N +G+ V ++ ++N G +
Sbjct: 60 AAWAAALADFAAATGGRLDALFNNAGVGR-------GGPFEDVPLAAHDRMVDINVKGVL 112
Query: 151 LVIKHMSPLLK--VGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKS 208
P LK G A V N ++ G L Y A+K A+ LT++
Sbjct: 113 NGAYAALPYLKATPG--------ARVINTASSSAIYGQPDLA---VYSATKFAVRGLTEA 161
Query: 209 VSVEFGRKKDPVICILLHPGTVDTDLSRPFQR 240
+ VE+ R V + P VDT + +
Sbjct: 162 LDVEWARHGIRVADVW--PWFVDTPILTKGET 191
|
This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 227 |
| >gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-05
Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 36/225 (16%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-NPNGATGLLDLKNRFPERLDVLQ 85
G ++V GA+ GIG E A +L G +A N +GA + D N+ + +
Sbjct: 6 NGKTAVVTGAASGIGKEIALELARA---GAAVAIADLNQDGANAVADEINKAGGKAIGVA 62
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL-----ML 140
+D+T E + A + E++GS+++L++ +GI +N +E S M
Sbjct: 63 MDVTNEDAVNAGIDKVAERFGSVDILVSNAGI----------QIVNPIENYSFADWKKMQ 112
Query: 141 AYEVNAVGPILVIKHMSP-LLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASK 199
A ++ G L K + K G+ V + ++ + S + +Y +K
Sbjct: 113 A--IHVDGAFLTTKAALKHMYKDDRGGV---VIYMGSVHSHEASPLKS------AYVTAK 161
Query: 200 AALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
L L + ++ E K V ++ PG V T L + +PE
Sbjct: 162 HGLLGLARVLAKE--GAKHNVRSHVVCPGFVRTPL---VDKQIPE 201
|
Length = 262 |
| >gnl|CDD|181508 PRK08628, PRK08628, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 43/191 (22%), Positives = 78/191 (40%), Gaps = 29/191 (15%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCV-IATCRNPNGATGLLDLKNRFPERLDVLQ 85
K V +V G + GIG + +L E+ G + + R+ +L+ P R + +Q
Sbjct: 6 KDKVVIVTGGASGIGAAISLRLAEE---GAIPVIFGRSAPDDEFAEELRALQP-RAEFVQ 61
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGI---LSIPNVLQPETTLNKVEKSSLMLAY 142
+DLT ++ + + K+G ++ L+N +G+ + + E S
Sbjct: 62 VDLTDDAQCRDAVEQTVAKFGRIDGLVNNAGVNDGVGL------EAGREAFVAS-----L 110
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
E N + ++ + P LK I N+S++ G GG Y A+K A
Sbjct: 111 ERNLIHYYVMAHYCLPHLKASRGAI-------VNISSKTALTGQ---GGTSGYAAAKGAQ 160
Query: 203 NQLTKSVSVEF 213
LT+ +V
Sbjct: 161 LALTREWAVAL 171
|
Length = 258 |
| >gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 31/199 (15%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPER---LDV 83
G +LV G SRG+GL+ A+ L E + V+ + R A L +
Sbjct: 11 SGKTALVTGGSRGLGLQIAEALGEAGAR--VVLSARK---AEELEEAAAHLEALGIDALW 65
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGIL-SIPNVLQPETTLNKVEKSSLMLAY 142
+ D+ E+ IE A+ E++G +++L+N +G P P +KV
Sbjct: 66 IAADVADEADIERLAEETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKV--------M 117
Query: 143 EVNAVGPILVIKHMSPL-LKVGGTGIERDVAVVA----NLSARVGSIGDNRLGGWHSYRA 197
+N G L+ + ++ + G G +VA VA N + +I Y
Sbjct: 118 NLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPEVMDTIA---------YNT 168
Query: 198 SKAALNQLTKSVSVEFGRK 216
SK A+ T++++ E+G
Sbjct: 169 SKGAVINFTRALAAEWGPH 187
|
Length = 259 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 49/201 (24%), Positives = 75/201 (37%), Gaps = 46/201 (22%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
G V L+ GAS GIG A ++ E V RN L+ D
Sbjct: 371 GKVVLITGASSGIGRATAIKVAEAG--ATVFLVARNGEALDELVAEIRAKGGTAHAYTCD 428
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYE---- 143
LT + ++ + K I ++G ++ L+N +G SI + S+ + +
Sbjct: 429 LTDSAAVDHTVKDILAEHGHVDYLVNNAG-RSI--------------RRSVENSTDRFHD 473
Query: 144 ------VNAVGPILVI----KHMSPLLKVGGTGIERDVAVVANLSARVGSIG-DNRLGGW 192
VN G + +I HM ER V N+S SIG +
Sbjct: 474 YERTMAVNYFGAVRLILGLLPHM----------RERRFGHVVNVS----SIGVQTNAPRF 519
Query: 193 HSYRASKAALNQLTKSVSVEF 213
+Y ASKAAL+ + + E
Sbjct: 520 SAYVASKAALDAFSDVAASET 540
|
Length = 657 |
| >gnl|CDD|183718 PRK12746, PRK12746, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 4e-05
Identities = 61/234 (26%), Positives = 100/234 (42%), Gaps = 30/234 (12%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCV-IATCRNPNGATGLLDLKNRFPERLDVLQL 86
G V+LV GASRGIG A +L ND V I RN A + + +++
Sbjct: 6 GKVALVTGASRGIGRAIAMRL--ANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEA 63
Query: 87 DLT----VESTIEASAKSIKEKYGS--LNLLINASGILSIPNVLQPETTLNKVEKSSLML 140
DL V+ +E ++ + G+ +++L+N +GI + + T+ +
Sbjct: 64 DLNSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIGT-------QGTIENTTEEIFDE 116
Query: 141 AYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKA 200
VN P +I+ PLL+ G I +++ R+G G +Y SK
Sbjct: 117 IMAVNIKAPFFLIQQTLPLLRAEGRVIN-----ISSAEVRLGFTGSI------AYGLSKG 165
Query: 201 ALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSV 254
ALN +T ++ G + V I+ PG TD++ + PE + F SV
Sbjct: 166 ALNTMTLPLAKHLGERGITVNTIM--PGYTKTDINAKLLDD-PEIRNFATNSSV 216
|
Length = 254 |
| >gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 36/211 (17%)
Query: 32 LVQGASRGIG----LEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE---RLDVL 84
L+ GAS GIG L FAK + + R+ + L L +
Sbjct: 10 LITGASSGIGKATALAFAKAGWD------LALVARSQDA---LEALAAELRSTGVKAAAY 60
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
+DL+ I + E++G ++LIN +G+ +L E L+ + ++ ++
Sbjct: 61 SIDLSNPEAIAPGIAELLEQFGCPDVLINNAGMAYTGPLL--EMPLSDWQW--VI---QL 113
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-GDNRLGGWHSYRASKAALN 203
N + P ++ G G+ + N+S SI N W +Y SKAAL
Sbjct: 114 NLTSVFQCCSAVLPGMRARGGGL------IINVS----SIAARNAFPQWGAYCVSKAALA 163
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
TK ++ E R +C + G V+T L
Sbjct: 164 AFTKCLAEE-ERSHGIRVCTIT-LGAVNTPL 192
|
Length = 241 |
| >gnl|CDD|187607 cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 22/189 (11%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
V LV GASRG+G A+ + + V+ R+ A + ER +Q D+
Sbjct: 2 VVLVTGASRGLGAAIARSFAREGAR-VVVNYYRSTESAEAVAAEAG---ERAIAIQADVR 57
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
++A + K +G ++ ++N + I + Q + T + ++ E G
Sbjct: 58 DRDQVQAMIEEAKNHFGPVDTIVNNALIDFPFDPDQRK-TFDTIDWEDYQQQLEGAVKGA 116
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGG----WHSYRASKAALNQL 205
+ +++ + P K G+G RV +IG N +H Y +KAAL
Sbjct: 117 LNLLQAVLPDFKERGSG-------------RVINIGTNLFQNPVVPYHDYTTAKAALLGF 163
Query: 206 TKSVSVEFG 214
T++++ E G
Sbjct: 164 TRNMAKELG 172
|
This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 49/219 (22%), Positives = 79/219 (36%), Gaps = 33/219 (15%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATC--RNPNGATGLLDLKNRFPERLDVLQLD 87
V+LV G RGIGL A+ L G +A + + D
Sbjct: 4 VALVTGGRRGIGLGIARALA---AAGFDLAINDRPDDEELAATQQELRALGVEVIFFPAD 60
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNV----LQPETTLNKVEKSSLMLAYE 143
+ S EA + + +G ++ L+N +G+ L PE S
Sbjct: 61 VADLSAHEAMLDAAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPE---------SFDRVLA 111
Query: 144 VNAVGPIL----VIKHMSPLLKVGG-TGIERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
+N GP V K M L + R + V++++A + S NR Y S
Sbjct: 112 INLRGPFFLTQAVAKRM--LAQPEPEELPHRSIVFVSSVNAIMVSP--NRG----EYCIS 163
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP 237
KA L+ + + + V + PG + TD++ P
Sbjct: 164 KAGLSMAAQLFAARLAEEGIGVYEV--RPGLIKTDMTAP 200
|
Length = 256 |
| >gnl|CDD|187669 cd09809, human_WWOX_like_SDR_c-like, human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 5e-05
Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 35/227 (15%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLD--LKNRFPERLDVL 84
G V ++ GA+ GIG E A+ G VI CRN + A+ + L+ R++ +
Sbjct: 1 GKVIIITGANSGIGFETARSFAL---HGAHVILACRNMSRASAAVSRILEEWHKARVEAM 57
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
LDL +++ A++ K K L++L+ + + ++P L + L ++V
Sbjct: 58 TLDLASLRSVQRFAEAFKAKNSPLHVLVCNAAVFALPWTLT---------EDGLETTFQV 108
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD-------NRLGG-----W 192
N +G +++ + +L+ V VV++ S R + D + L W
Sbjct: 109 NHLGHFYLVQLLEDVLRRSAPA---RVIVVSSESHRFTDLPDSCGNLDFSLLSPPKKKYW 165
Query: 193 HSYRASKAALNQLTKSVSVEFGRKKDP--VICILLHPGT-VDTDLSR 236
++A L + S E R+ P + LHPG + + + R
Sbjct: 166 SMLAYNRAKLCNIL--FSNELHRRLSPRGITSNSLHPGNMMYSSIHR 210
|
Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 284 |
| >gnl|CDD|187664 cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-05
Identities = 51/225 (22%), Positives = 86/225 (38%), Gaps = 46/225 (20%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIA-TCRNP-NGATGLLDLKNRFPERLDVL 84
G ++LV GASRGIG A QL E G + T R G + + +
Sbjct: 2 SGKIALVTGASRGIGRGIALQLGE---AGATVYITGRTILPQLPGTAEEIEARGGKCIPV 58
Query: 85 QLDLTVESTIEAS-AKSIKEKYGSLNLLIN-----ASGILSIPNV---LQPETTLNKVEK 135
+ D + + +EA + +E+ G L++L+N IL +P T + +
Sbjct: 59 RCDHSDDDEVEALFERVAREQQGRLDILVNNAYAAVQLILVGVAKPFWEEPPTIWDDINN 118
Query: 136 SSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSY 195
L Y + + +PL+ G G+ + +S+ G Y
Sbjct: 119 VGLRAHYACSV--------YAAPLMVKAGKGL------IVIISS----------TGGLEY 154
Query: 196 R------ASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
KAA++++ ++ E K V + L PG V T+L
Sbjct: 155 LFNVAYGVGKAAIDRMAADMAHEL--KPHGVAVVSLWPGFVRTEL 197
|
This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 265 |
| >gnl|CDD|168186 PRK05693, PRK05693, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-05
Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 25/183 (13%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
V L+ G S GIG A K V AT R D++ +QLD+
Sbjct: 3 VVLITGCSSGIGRALADAF--KAAGYEVWATARKAE------DVEALAAAGFTAVQLDVN 54
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
+ + A+ ++ ++G L++LIN +G ++ +L ++ +E N
Sbjct: 55 DGAALARLAEELEAEHGGLDVLINNAGYGAMGPLLDGGV-------EAMRRQFETNVFAV 107
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
+ V + + PLL+ R +V N+ + G + G +Y ASKAA++ L+ ++
Sbjct: 108 VGVTRALFPLLR-------RSRGLVVNIGSVSGVLVTPFAG---AYCASKAAVHALSDAL 157
Query: 210 SVE 212
+E
Sbjct: 158 RLE 160
|
Length = 274 |
| >gnl|CDD|188169 TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-05
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 27/217 (12%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLD--VLQL 86
++LV G GIG ++L G V A C PN L+ + D V++
Sbjct: 2 IALVTGGMGGIGTAICQRLA---KDGYRVAANCG-PNEERAEAWLQEQGALGFDFRVVEG 57
Query: 87 DLTV-ESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
D++ ES A AK ++ + G +++L+N +GI + T K+ + N
Sbjct: 58 DVSSFESCKAAVAK-VEAELGPIDVLVNNAGITR-------DATFKKMTYEQWSAVIDTN 109
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
V + + ++ ER + N+S+ G G G +Y A+KA +
Sbjct: 110 LNSVFNVTQPVIDGMR------ERGWGRIINISSVNGQKGQ---FGQTNYSAAKAGMIGF 160
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNV 242
TK+++ E K V I PG + TD+ + +V
Sbjct: 161 TKALAQEGATKGVTVNTI--SPGYIATDMVMAMREDV 195
|
This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. Length = 242 |
| >gnl|CDD|236094 PRK07774, PRK07774, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-05
Identities = 59/266 (22%), Positives = 104/266 (39%), Gaps = 35/266 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
V++V GA+ GIG +A+ L + V+ N GA + +Q+
Sbjct: 5 DDKVAIVTGAAGGIGQAYAEAL--AREGASVVVADINAEGAERVAKQIVADGGTAIAVQV 62
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D++ + +A A + +G ++ L+N + I L T+ M VN
Sbjct: 63 DVSDPDSAKAMADATVSAFGGIDYLVNNAAIYG-GMKLDLLITVPWDYYKKFM---SVNL 118
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGW---HSYRASKAALN 203
G ++ + + + G G A+V S W + Y +K LN
Sbjct: 119 DGALVCTRAVYKHMAKRGGG-----AIVNQSST----------AAWLYSNFYGLAKVGLN 163
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR---------PFQRNVPEGKLFTKEFSV 254
LT+ ++ E G V I PG +DT+ +R + +P ++ T E V
Sbjct: 164 GLTQQLARELGGMNIRVNAIA--PGPIDTEATRTVTPKEFVADMVKGIPLSRMGTPEDLV 221
Query: 255 QKLLNIINNIKSHDNGKFFAWDGQEI 280
L ++++ S G+ F DG +I
Sbjct: 222 GMCLFLLSDEASWITGQIFNVDGGQI 247
|
Length = 250 |
| >gnl|CDD|168204 PRK05717, PRK05717, oxidoreductase; Validated | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 7e-05
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 25/206 (12%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
G V+LV GA+RGIGL A L+ + + V+A G+ + E + +D
Sbjct: 10 GRVALVTGAARGIGLGIAAWLIAEGWQ-VVLADLDRERGSK----VAKALGENAWFIAMD 64
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
+ E+ + A + ++G L+ L+ + I N TTL + + VN
Sbjct: 65 VADEAQVAAGVAEVLGQFGRLDALVCNAAIADPHN-----TTLESLSLAHWNRVLAVNLT 119
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
GP+L+ KH +P L+ A+V S R + +Y ASK L LT
Sbjct: 120 GPMLLAKHCAPYLRAHNG------AIVNLASTRARQSEPDT----EAYAASKGGLLALTH 169
Query: 208 SVSVEFGRKKDPVICI-LLHPGTVDT 232
++++ G P I + + PG +D
Sbjct: 170 ALAISLG----PEIRVNAVSPGWIDA 191
|
Length = 255 |
| >gnl|CDD|180823 PRK07074, PRK07074, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 9e-05
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 29/206 (14%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP-ERLDVLQLDL 88
+LV GA+ GIG A++ L D+ V+A + D R + DL
Sbjct: 4 TALVTGAAGGIGQALARRFLAAGDR--VLALDIDAAALAAFAD---ALGDARFVPVACDL 58
Query: 89 TVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVG 148
T +++ A+ + + G +++L+ +G +L+ +S +N
Sbjct: 59 TDAASLAAALANAAAERGPVDVLVANAGAAR-------AASLHDTTPASWRADNALNLEA 111
Query: 149 PILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-GDNRLGGWH-SYRASKAALNQLT 206
L ++ + + ++R V N +GS+ G LG H +Y A+KA L T
Sbjct: 112 AYLCVEAVLEGM------LKRSRGAVVN----IGSVNGMAALG--HPAYSAAKAGLIHYT 159
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDT 232
K ++VE+GR + + PGTV T
Sbjct: 160 KLLAVEYGR--FGIRANAVAPGTVKT 183
|
Length = 257 |
| >gnl|CDD|187668 cd09808, DHRS-12_like_SDR_c-like, human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 9e-05
Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 33/217 (15%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD--LKNRFPERLDVLQ 85
G L+ GA+ GIG A + ++ G V CRN A + + +
Sbjct: 1 GRSFLITGANSGIGKAAALAIAKRG--GTVHMVCRNQTRAEEARKEIETESGNQNIFLHI 58
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
+D++ + + KE+ L++LIN +G + V + E T + +EK+ + N
Sbjct: 59 VDMSDPKQVWEFVEEFKEEGKKLHVLINNAGCM----VNKRELTEDGLEKN-----FATN 109
Query: 146 AVGPILVIKHMSPLLK---------VGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR 196
+G ++ H+ P+L+ V G+ NL + G Y
Sbjct: 110 TLGTYILTTHLIPVLEKEEDPRVITVSSGGMLVQKLNTNNLQSERT-----AFDGTMVY- 163
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVICI-LLHPGTVDT 232
A N+ + + E KK P I ++HPG DT
Sbjct: 164 ----AQNKRQQVIMTEQWAKKHPEIHFSVMHPGWADT 196
|
Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 255 |
| >gnl|CDD|180604 PRK06523, PRK06523, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 48/218 (22%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G +LV G ++GIG +LLE + V+ T R+ PE ++ +
Sbjct: 8 AGKRALVTGGTKGIGAATVARLLEAGAR--VVTTARSRPDDL---------PEGVEFVAA 56
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLIN--------ASGILSIPN-VLQPETTLNKVEKSS 137
DLT A A+++ E+ G +++L++ A G ++ + Q E LN
Sbjct: 57 DLTTAEGCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLN------ 110
Query: 138 LMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS--ARVGSIGDNRLGGWHSY 195
L+ A ++ ++ M I R V+ +++ R + ++ Y
Sbjct: 111 LLAAVRLDR----ALLPGM----------IARGSGVIIHVTSIQRRLPLPESTTA----Y 152
Query: 196 RASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
A+KAAL+ +KS+S E K V + PG ++T+
Sbjct: 153 AAAKAALSTYSKSLSKEVAPKGVRVNTV--SPGWIETE 188
|
Length = 260 |
| >gnl|CDD|236210 PRK08267, PRK08267, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 48/205 (23%), Positives = 75/205 (36%), Gaps = 25/205 (12%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP-ERLDVLQLDLTV 90
+ GA+ GIG A + + V A N GL L LD+T
Sbjct: 5 FITGAASGIGRATALLFAAEGWR--VGAYDIN---EAGLAALAAELGAGNAWTGALDVTD 59
Query: 91 ESTIEASAKSIKEKY-GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
+ +A+ G L++L N +GIL + + ++N G
Sbjct: 60 RAAWDAALADFAAATGGRLDVLFNNAGILR-------GGPFEDIPLEAHDRVIDINVKGV 112
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
+ P LK G A V N S+ G L Y A+K A+ LT+++
Sbjct: 113 LNGAHAALPYLK-ATPG-----ARVINTSSASAIYGQPGLA---VYSATKFAVRGLTEAL 163
Query: 210 SVEFGRKKDPVICILLHPGTVDTDL 234
+E+ R V ++ P VDT +
Sbjct: 164 DLEWRRHGIRVADVM--PLFVDTAM 186
|
Length = 260 |
| >gnl|CDD|236399 PRK09186, PRK09186, flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD--LKNRFPERLDVL 84
KG L+ GA IG K +LE G VIA + LL+ K ++L ++
Sbjct: 3 KGKTILITGAGGLIGSALVKAILEAG--GIVIAADIDKEALNELLESLGKEFKSKKLSLV 60
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLIN 113
+LD+T + ++E EKYG ++ +N
Sbjct: 61 ELDITDQESLEEFLSKSAEKYGKIDGAVN 89
|
Length = 256 |
| >gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 38/210 (18%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
V+LV GAS GIG A++L + V R + L L L LD+T
Sbjct: 5 VALVTGASSGIGKATARRLAAQGYT--VYGAARRVDKMEDLASLGVH------PLSLDVT 56
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLA---YEVNA 146
E++I+A+ +I + G +++L+N +G S +E + A +EVN
Sbjct: 57 DEASIKAAVDTIIAEEGRIDVLVNNAGYGS----------YGAIEDVPIDEARRQFEVNL 106
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G + + + P ++ +G + N+S+ G I LG W Y A+K AL +
Sbjct: 107 FGAARLTQLVLPHMRAQRSG------RIINISSMGGKIY-TPLGAW--YHATKFALEGFS 157
Query: 207 KSVSVE---FGRKKDPVICILLHPGTVDTD 233
++ +E FG +++ PG + T+
Sbjct: 158 DALRLEVAPFGID-----VVVIEPGGIKTE 182
|
Length = 273 |
| >gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 39/197 (19%), Positives = 82/197 (41%), Gaps = 19/197 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
KG V+++ G +G AK+L K V RN A ++ ++
Sbjct: 9 KGKVAVITGGGGVLGGAMAKELARAGAK--VAILDRNQEKAEAVVAEIKAAGGEALAVKA 66
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASG--------ILSIPNVLQPETTLNKVEKSSL 138
D+ + ++E + + I E +G ++LIN +G +++P T +++
Sbjct: 67 DVLDKESLEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGF 126
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
+++N +G +L P + R + N+S+ ++ Y A+
Sbjct: 127 EFVFDLNLLGTLL------PTQVFAKDMVGRKGGNIINISSMNAFTPLTKVPA---YSAA 177
Query: 199 KAALNQLTKSVSVEFGR 215
KAA++ T+ ++V F +
Sbjct: 178 KAAISNFTQWLAVHFAK 194
|
Length = 278 |
| >gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 36/216 (16%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIA-TCRNPNGATGLLDLKNRFPERLDVLQL 86
G V +V GA+RGIG E A++L + +G +A L L VL +
Sbjct: 9 GKVVVVTGAARGIGAELARRL---HARGAKLALVDLEE---AELAALAAELGGDDRVLTV 62
Query: 87 --DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ--PETTLNKVEKSSLMLAY 142
D+T + ++A+A+ E++G +++++ +GI S +V Q P+ +V
Sbjct: 63 VADVTDLAAMQAAAEEAVERFGGIDVVVANAGIASGGSVAQVDPDA-FRRV--------I 113
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERD--VAVVANLSARVGSIGDNRLGGWHSYRASKA 200
+VN +G ++ P L IER V V++L+A + G +Y ASKA
Sbjct: 114 DVNLLGVFHTVRATLPAL------IERRGYVLQVSSLAAFAAA------PGMAAYCASKA 161
Query: 201 ALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
+ ++ +E V + +DTDL R
Sbjct: 162 GVEAFANALRLEVAHHGVTVGSA--YLSWIDTDLVR 195
|
Length = 296 |
| >gnl|CDD|181668 PRK09135, PRK09135, pteridine reductase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 43/197 (21%), Positives = 70/197 (35%), Gaps = 43/197 (21%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL--DLKNRFPERLDVLQLD 87
V+L+ G +R IG A+ L + V L +L P LQ D
Sbjct: 8 VALITGGARRIGAAIARTLHAAGYR--VAIHYHRSAAEADALAAELNALRPGSAAALQAD 65
Query: 88 LTVESTIEASAKSIKEKYGSLNLLI-NASGILSIPNVLQPETTLNKVEKSS---LMLAYE 143
L + + +G L+ L+ NAS T L + ++ L
Sbjct: 66 LLDPDALPELVAACVAAFGRLDALVNNASSFYP--------TPLGSITEAQWDDLFA--- 114
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-------GDNRLGGWHSYR 196
N P + + +P L+ + G+I + L G+ Y
Sbjct: 115 SNLKAPFFLSQAAAPQLR-----------------KQRGAIVNITDIHAERPLKGYPVYC 157
Query: 197 ASKAALNQLTKSVSVEF 213
A+KAAL LT+S+++E
Sbjct: 158 AAKAALEMLTRSLALEL 174
|
Length = 249 |
| >gnl|CDD|180343 PRK05993, PRK05993, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
L+ G S GIG A+ L ++D V ATCR D+ E L+ QLD
Sbjct: 8 LITGCSSGIGAYCARAL--QSDGWRVFATCRKEE------DVAALEAEGLEAFQLDYAEP 59
Query: 92 STIEASAKSIKEKY-GSLNLLIN 113
+I A + E G L+ L N
Sbjct: 60 ESIAALVAQVLELSGGRLDALFN 82
|
Length = 277 |
| >gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 3e-04
Identities = 42/191 (21%), Positives = 87/191 (45%), Gaps = 25/191 (13%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE-----RLDVL 84
V L+ G G+GL A +L ++ K ++ GL K E + ++
Sbjct: 5 VVLITGGGSGLGLATAVRLAKEGAKLSLVDLNEE-----GLEAAKAALLEIAPDAEVLLI 59
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
+ D++ E+ +EA + E++G ++ N +GI N+ + + ++ +K +
Sbjct: 60 KADVSDEAQVEAYVDATVEQFGRIDGFFNNAGIEGKQNLTE-DFGADEFDK-----VVSI 113
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N G ++ + +++ G+G +V +A VG I +G Y A+K +
Sbjct: 114 NLRGVFYGLEKVLKVMREQGSG-----MIVN--TASVGGI--RGVGNQSGYAAAKHGVVG 164
Query: 205 LTKSVSVEFGR 215
LT++ +VE+G+
Sbjct: 165 LTRNSAVEYGQ 175
|
Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 23/208 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
+G V+LV GA+ G+G A L E G I + + R L
Sbjct: 4 EGKVALVTGANTGLGQGIAVGLAEA---GADIV-GAGRSEPSETQQQVEALGRRFLSLTA 59
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEVN 145
DL+ I+A S E++G +++L+N +GI+ + + E + V +L + +
Sbjct: 60 DLSDIEAIKALVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLT 119
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
KH LK G G + +A++ + G I R+ SY ASK A+ L
Sbjct: 120 Q----AAAKHF---LKQGRGG---KIINIASMLSFQGGI---RVP---SYTASKHAVAGL 163
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTD 233
TK ++ E+ K V I PG + T+
Sbjct: 164 TKLLANEWAAKGINVNAIA--PGYMATN 189
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 248 |
| >gnl|CDD|187606 cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 51/216 (23%), Positives = 88/216 (40%), Gaps = 30/216 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
KG V+L+ G G+G ++ + + V R+ L + F + + ++
Sbjct: 3 KGEVALITGGGSGLGRALVERFVAEG--AKVAVLDRSAEKVAEL---RADFGDAVVGVEG 57
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGI----LSIPNVLQPETTLNKVEKSSLMLAY 142
D+ + E + E++G L+ I +GI S+ ++ PE L++ + +
Sbjct: 58 DVRSLADNERAVARCVERFGKLDCFIGNAGIWDYSTSLVDI--PEEKLDE----AFDELF 111
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
+N G IL K P L + + V+N G GG Y ASK A+
Sbjct: 112 HINVKGYILGAKAALPALYATEGSV---IFTVSNAGFYPG-------GGGPLYTASKHAV 161
Query: 203 NQLTKSVSVEFGRKKDPVICI-LLHPGTVDTDLSRP 237
L K ++ E P I + + PG + TDL P
Sbjct: 162 VGLVKQLAYELA----PHIRVNGVAPGGMVTDLRGP 193
|
cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB) is a classical SDR, it is of particular importance for its role in the degradation of biphenyl/polychlorinated biphenyls(PCBs); PCBs are a significant source of environmental contamination. This subgroup also includes Pseudomonas putida F1 cis-biphenyl-1,2-dihydrodiol-1,2-dehydrogenase (aka cis-benzene glycol dehydrogenase, encoded by the bnzE gene), which participates in benzene metabolism. In addition it includes Pseudomonas sp. C18 putative 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase (aka dibenzothiophene dihydrodiol dehydrogenase, encoded by the doxE gene) which participates in an upper naphthalene catabolic pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|169556 PRK08703, PRK08703, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 4e-04
Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 30/213 (14%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD--LKNRFPE----RL 81
LV GAS+G+G + AK VI R+ + D ++ PE R
Sbjct: 6 DKTILVTGASQGLGEQVAKAYAAAG--ATVILVARHQKKLEKVYDAIVEAGHPEPFAIRF 63
Query: 82 DVLQLDLTVESTIEASAKSI-KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML 140
D++ E E A +I + G L+ +++ +G + L +T + +
Sbjct: 64 DLMS---AEEKEFEQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTV------AEWVN 114
Query: 141 AYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG-SIGDNRLGGWHSYRASK 199
Y +N V P+ + + + PLLK D +V+ VG S G+ W + ASK
Sbjct: 115 QYRINTVAPMGLTRALFPLLKQS-----PDASVIF-----VGESHGETPKAYWGGFGASK 164
Query: 200 AALNQLTKSVSVEFGRKKDPVICILLHPGTVDT 232
AALN L K + E+ R + +L+ PG +++
Sbjct: 165 AALNYLCKVAADEWERFGNLRANVLV-PGPINS 196
|
Length = 239 |
| >gnl|CDD|187595 cd05334, DHPR_SDR_c_like, dihydropteridine reductase (DHPR), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 44/209 (21%), Positives = 72/209 (34%), Gaps = 29/209 (13%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
V LV G +G + + I N + VL D
Sbjct: 1 ARVVLVYGGRGALGSAVVQAFKSRGWWVASIDLAENEEAD-----------ASIIVLDSD 49
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
E + A S+ G ++ LI +G + + + + V+ LM ++ N
Sbjct: 50 SFTEQAKQVVA-SVARLSGKVDALICVAGGWAGGSA----KSKSFVKNWDLM--WKQNLW 102
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
+ + L GG + A L G IG Y A+KAA++QLT+
Sbjct: 103 TSFIASHLATKHLLSGGLLV--LTGAKAALEPTPGMIG---------YGAAKAAVHQLTQ 151
Query: 208 SVSVEFGRKKDPVICILLHPGTVDTDLSR 236
S++ E + P T+DT +R
Sbjct: 152 SLAAENSGLPAGSTANAILPVTLDTPANR 180
|
Dihydropteridine reductase is an NAD-binding protein related to the SDRs. It converts dihydrobiopterin into tetrahydrobiopterin, a cofactor necessary in catecholamines synthesis. Dihydropteridine reductase has the YXXXK of these tyrosine-dependent oxidoreductases, but lacks the typical upstream Asn and Ser catalytic residues. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 221 |
| >gnl|CDD|235693 PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 21/191 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
K V +V G+ RGIG A +L ++ V A R L +K E + VL
Sbjct: 5 KDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLA- 63
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D++ E AK+ ++YG ++L+N +G+ L + L ++K +
Sbjct: 64 DVSTREGCETLAKATIDRYGVADILVNNAGLGLFSPFLNVDDKL--IDKH-----ISTDF 116
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG-SIGDNRLGGWHSYRASKAALNQL 205
I + ++ ++ GG + ++A VA + G SI Y A KAA+ L
Sbjct: 117 KSVIYCSQELAKEMREGGAIV--NIASVAGIRPAYGLSI----------YGAMKAAVINL 164
Query: 206 TKSVSVEFGRK 216
TK +++E K
Sbjct: 165 TKYLALELAPK 175
|
Length = 252 |
| >gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 13/218 (5%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G V+++ GA+ G GL FA+ K V+A + + +L+ + E L V +
Sbjct: 5 AGKVAVITGAASGFGLAFARIGAALGMK-LVLADVQQDALDRAVAELRAQGAEVLGV-RT 62
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D++ + +EA A + E++G+++LL N +G+ + V E +L E VN
Sbjct: 63 DVSDAAQVEALADAALERFGAVHLLFNNAGVGAGGLVW--ENSLADWE-----WVLGVNL 115
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G I ++ +PL+ + N ++ G + +G Y SK A+ LT
Sbjct: 116 WGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPPAMG---IYNVSKHAVVSLT 172
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
+++ + D V +L P V T + + +RN P
Sbjct: 173 ETLYQDLSLVTDQVGASVLCPYFVPTGIWQS-ERNRPA 209
|
Length = 287 |
| >gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 7e-04
Identities = 48/229 (20%), Positives = 98/229 (42%), Gaps = 26/229 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G +L+ GAS GIG A +E + + A R+ + L D ++ +
Sbjct: 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAA--RHLDALEKLADEIGTSGGKVVPVCC 65
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEVN 145
D++ + + + + G +++ + +GI+++ +L P +++ N
Sbjct: 66 DVSQHQQVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQ--------NTN 117
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G L + + + G G + A++S + ++ ++ Y ASKAA+ L
Sbjct: 118 VTGVFLTAQAAAKAMVKQGQG--GVIINTASMSGHIINV-PQQVS---HYCASKAAVIHL 171
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-------FQRNVPEGKL 247
TK+++VE K V + PG + T+L P ++ +P G+L
Sbjct: 172 TKAMAVELAPHKIRVNSV--SPGYILTELVEPYTEYQPLWEPKIPLGRL 218
|
Length = 253 |
| >gnl|CDD|187599 cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 8e-04
Identities = 51/212 (24%), Positives = 80/212 (37%), Gaps = 28/212 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG----ATGLLDLKNRFPERLD 82
+ LV GAS GIG E A VI RN A + + R P+
Sbjct: 3 NDRIILVTGASDGIGREAALTYARYG--ATVILLGRNEEKLRQVADHINEEGGRQPQ--- 57
Query: 83 VLQLDLTVEST--IEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML 140
LDL ++ + A+ I Y L+ G+L +L L++
Sbjct: 58 WFILDLLTCTSENCQQLAQRIAVNYPRLD------GVLHNAGLLGDVCPLSEQNPQVWQD 111
Query: 141 AYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKA 200
+VN ++ + + PLL + D + S+ VG G W +Y SK
Sbjct: 112 VXQVNVNATFMLTQALLPLLL------KSDAGSLVFTSSSVGRQGR---ANWGAYAVSKF 162
Query: 201 ALNQLTKSVSVEFGRKKDPVICILLHPGTVDT 232
A L + ++ E+ ++ V CI +PG T
Sbjct: 163 ATEGLXQVLADEYQQRNLRVNCI--NPGGTRT 192
|
Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 236 |
| >gnl|CDD|235703 PRK06125, PRK06125, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 8e-04
Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 33/207 (15%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLL-DLKNRFPERLDVLQLDLT 89
L+ GAS+GIG A+ +GC + R+ + L DL+ + V LDL+
Sbjct: 11 LITGASKGIGAAAAEAFAA---EGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLS 67
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
E A + G +++L+N +G + P L+ V+ ++ +E+ G
Sbjct: 68 SPEAREQLA----AEAGDIDILVNNAGAI-------PGGGLDDVDDAAWRAGWELKVFGY 116
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
I + + P +K G+G V+ N+ +G+ G+N + A AAL T+++
Sbjct: 117 IDLTRLAYPRMKARGSG------VIVNV---IGAAGENPDADYICGSAGNAALMAFTRAL 167
Query: 210 ---SVEFGRKKDPVICILLHPGTVDTD 233
S++ G V + ++PG V TD
Sbjct: 168 GGKSLDDG-----VRVVGVNPGPVATD 189
|
Length = 259 |
| >gnl|CDD|235924 PRK07063, PRK07063, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 9e-04
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-PERLDVLQ 85
G V+LV GA++GIG A+ + +A + R+ +
Sbjct: 6 AGKVALVTGAAQGIGAAIARAFAREGAA-VALADLDAALAERAAAAIARDVAGARVLAVP 64
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGI 117
D+T +++ A+ + +E +G L++L+N +GI
Sbjct: 65 ADVTDAASVAAAVAAAEEAFGPLDVLVNNAGI 96
|
Length = 260 |
| >gnl|CDD|180399 PRK06101, PRK06101, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.001
Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 31/208 (14%)
Query: 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL-KNRFPERLDVLQLD 87
L+ GA+ GIG + A ++ + VIA RN + L N F DV
Sbjct: 2 TAVLITGATSGIGKQLALDYAKQGWQ--VIACGRNQSVLDELHTQSANIFTLAFDVTDHP 59
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
T + + I E + NA + + KV+ + + + VN +
Sbjct: 60 GTKAAL--SQLPFIPE-----LWIFNAGDCEYMDD--------GKVDATLMARVFNVNVL 104
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
G I+ + P L G V +V ++++ + L +Y ASKAA+ +
Sbjct: 105 GVANCIEGIQPHLSCG-----HRVVIVGSIASELA------LPRAEAYGASKAAVAYFAR 153
Query: 208 SVSVEFGRKKDPVICILLHPGTVDTDLS 235
++ ++ K V+ + PG V T L+
Sbjct: 154 TLQLDLRPKGIEVVTVF--PGFVATPLT 179
|
Length = 240 |
| >gnl|CDD|131468 TIGR02415, 23BDH, acetoin reductases | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.001
Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 25/208 (12%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-NPNGATGLLDLKNRFPERLDVLQLDL 88
V+LV G ++GIG A++L + G +A N A N+ + +LD+
Sbjct: 2 VALVTGGAQGIGKGIAERLAKD---GFAVAVADLNEETAKETAKEINQAGGKAVAYKLDV 58
Query: 89 TVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVG 148
+ + + ++ EK+G ++++N +G+ I +L E T +++K Y VN G
Sbjct: 59 SDKDQVFSAIDQAAEKFGGFDVMVNNAGVAPITPIL--EITEEELKK-----VYNVNVKG 111
Query: 149 PILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKS 208
+ I+ + K G G + N ++ G G+ L +Y ++K A+ LT++
Sbjct: 112 VLFGIQAAARQFKKQGHG-----GKIINAASIAGHEGNPILS---AYSSTKFAVRGLTQT 163
Query: 209 VSVEFGRKKDPV--ICILLHPGTVDTDL 234
+ E K V C PG V T +
Sbjct: 164 AAQELAPKGITVNAYC----PGIVKTPM 187
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PMID:11577733) [Energy metabolism, Fermentation]. Length = 254 |
| >gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.001
Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 28/212 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G +LV G+S+GIG A+ L + + VI R+P + L
Sbjct: 9 TGRRALVTGSSQGIGYALAEGLAQAGAE--VILNGRDPAKLAAAAESLKGQGLSAHALAF 66
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNK--VEKSSLMLAYEV 144
D+T + A+ + + + G +++L+N +G +Q T L + +L +
Sbjct: 67 DVTDHDAVRAAIDAFEAEIGPIDILVNNAG-------MQFRTPLEDFPADAFERLLRTNI 119
Query: 145 NAVGPI--LVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
++V + V +HM G G ++A V + AR G I Y A+K A+
Sbjct: 120 SSVFYVGQAVARHMIAR----GAGKIINIASVQSALARPG-IA--------PYTATKGAV 166
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
LTK ++ ++ + + C + PG DT L
Sbjct: 167 GNLTKGMATDWAKHG--LQCNAIAPGYFDTPL 196
|
Length = 255 |
| >gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 33/206 (16%)
Query: 20 ASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE 79
V G L+ GAS GIG A+Q + V+A R L + +R
Sbjct: 32 PRQPVDLTGKRILLTGASSGIGEAAAEQFARRGAT--VVAVAR---REDLLDAVADRITR 86
Query: 80 R---LDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNK---V 133
+ DL+ ++A ++++ G +++LIN +G SI L +L++ V
Sbjct: 87 AGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAG-RSIRRPL--AESLDRWHDV 143
Query: 134 EKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVA---VVANLSARVGSIGDNRLG 190
E++ +N P+ +I+ ++P + G G +VA V++ S
Sbjct: 144 ERT-----MVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEASPLFS-------- 190
Query: 191 GWHSYRASKAALNQLTKSVSVEFGRK 216
Y ASKAAL+ +++ + E+G +
Sbjct: 191 ---VYNASKAALSAVSRVIETEWGDR 213
|
Length = 293 |
| >gnl|CDD|235739 PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 26/214 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G V+L+ G GIG ++ L + V R+ L + RF + + V++
Sbjct: 5 HGQVALITGGGSGIGRALVERFLAEG--ARVAVLERSAEKLASL---RQRFGDHVLVVEG 59
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGI--LSIPNVLQPETTLNKVEKSSLMLAYEV 144
D+T + + + + +G L+ + +GI + V P TL+ ++ + V
Sbjct: 60 DVTSYADNQRAVDQTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLD----TAFDEIFNV 115
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N G +L K P LK G + + ++N S G GG Y ASK A+
Sbjct: 116 NVKGYLLGAKAALPALKASGGSM---IFTLSNSSFYPG-------GGGPLYTASKHAVVG 165
Query: 205 LTKSVSVEFGRKKDPVICIL-LHPGTVDTDLSRP 237
L + ++ E P I + + PG TDL P
Sbjct: 166 LVRQLAYELA----PKIRVNGVAPGGTVTDLRGP 195
|
Length = 263 |
| >gnl|CDD|187631 cd05373, SDR_c10, classical (c) SDR, subgroup 10 | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.002
Identities = 55/212 (25%), Positives = 83/212 (39%), Gaps = 28/212 (13%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIA-TCRNPNGATGLLDLKNR-FPERLDVLQLD 87
V+ V GA G+G A++ + G +A R LL R + D
Sbjct: 1 VAAVVGAGDGLGAAIARRFAAE---GFSVALAARREAKLEALLVDIIRDAGGSAKAVPTD 57
Query: 88 LTVESTIEASAKSIKEKYGSLNLLI-NASGILSIPNVLQP--ETTLNKVEKSSLMLAYEV 144
E + A I+E+ G L +L+ NA NV P ETT EK +E+
Sbjct: 58 ARDEDEVIALFDLIEEEIGPLEVLVYNAGA-----NVWFPILETTPRVFEK-----VWEM 107
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
A G L + + + G G A+L R G ++ +K AL
Sbjct: 108 AAFGGFLAAREAAKRMLARGRGTIIFTGATASLRGRAGFA---------AFAGAKFALRA 158
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
L +S++ E G K V +++ G +DTD R
Sbjct: 159 LAQSMARELGPKGIHVAHVIID-GGIDTDFIR 189
|
This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 238 |
| >gnl|CDD|187670 cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 45/180 (25%), Positives = 70/180 (38%), Gaps = 25/180 (13%)
Query: 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDL 88
G ++ GAS G+GL AK L + + V+ CR+ A + VL DL
Sbjct: 2 GTVVITGASSGLGLAAAKALARR-GEWHVVMACRDFLKAEQAAQEVGMPKDSYSVLHCDL 60
Query: 89 TVESTIEASAKSIKEKYGSLN-LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
++ + + L+ L+ NA+ + +P +P T + E L VN +
Sbjct: 61 ASLDSVRQFVDNFRRTGRPLDALVCNAA--VYLPTAKEPRFTADGFE-----LTVGVNHL 113
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSAR---VGSI-GD-NRLGGWHSYRASKAAL 202
G L+ + D+ N S R VGSI + N L G RA+ L
Sbjct: 114 GHFLLT-----------NLLLEDLQRSENASPRIVIVGSITHNPNTLAGNVPPRATLGDL 162
|
Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 311 |
| >gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 50/232 (21%), Positives = 83/232 (35%), Gaps = 71/232 (30%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
V++V GASRGIG A++L G +A + A D
Sbjct: 5 NKVAIVTGASRGIGAAIARRLAAD---GFAVAVNYAGSAAAA-----------------D 44
Query: 88 LTVESTIEASAKSI-------------------KEKYGSLNLLINASGILSIPNVLQPET 128
V A ++I + +G +++L+N +G++
Sbjct: 45 ELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFGRIDVLVNNAGVMP--------- 95
Query: 129 TLNKVEKSSL-----MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183
L + L +A N G +V++ + L GG I +V+A
Sbjct: 96 -LGTIADFDLEDFDRTIA--TNLRGAFVVLREAARHLGQGGRIINLSTSVIALP------ 146
Query: 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICI-LLHPGTVDTDL 234
L G+ Y ASKAA+ L ++ E + I + + PG V T+L
Sbjct: 147 -----LPGYGPYAASKAAVEGLVHVLANELRGRG---ITVNAVAPGPVATEL 190
|
Length = 245 |
| >gnl|CDD|200089 TIGR01289, LPOR, light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.002
Identities = 64/289 (22%), Positives = 112/289 (38%), Gaps = 55/289 (19%)
Query: 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDL 88
++ GAS G+GL AK L + VI CR+ A + ++ LDL
Sbjct: 4 PTVIITGASSGLGLYAAKALAATG-EWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDL 62
Query: 89 TVESTIEASAKSIKEKYGSLNLLI-NASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
++ + +E L+ L+ NA+ + P +P T + E L+ N +
Sbjct: 63 GSLDSVRQFVQQFRESGRPLDALVCNAA--VYFPTAKEPRFTADGFE-----LSVGTNHL 115
Query: 148 GPILVIK----------HMSPLLKVGG--TGIERDVA--------------VVANLSARV 181
G L+ + L + G TG +A + A A +
Sbjct: 116 GHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANLGDLSGLAAGFKAPI 175
Query: 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICIL---LHPGTV-DTDLSR- 236
I G +Y+ SK N LT E R+ I L+PG + DT L R
Sbjct: 176 AMIDGKEFKGAKAYKDSKVC-NMLT---VRELHRRFHDETGITFASLYPGCIADTGLFRE 231
Query: 237 ----------PFQRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAW 275
PFQ+ + +G + ++E + ++L ++++ K +G +++W
Sbjct: 232 HVPLFRTLFPPFQKYITKGYV-SEEEAGERLAQVVSDPKLKKSGVYWSW 279
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 314 |
| >gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.002
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 48/229 (20%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
V+LV GA+ GIGL A++L ++ + V R G + D D+
Sbjct: 5 VALVTGATSGIGLAIARRLGKEGLR--VFVCARGEEGLATTVKELREAGVEADGRTCDVR 62
Query: 90 VESTIEASAKSIKEKYGSLNLLINASG------ILSIPNVLQ---PETTLNKVEKSSLML 140
IEA + +YG +++L+N +G + + L ET L V
Sbjct: 63 SVPEIEALVAAAVARYGPIDVLVNNAGRSGGGATAELADELWLDVVETNLTGV------- 115
Query: 141 AYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHS--YRAS 198
V K +LK GG ER + N+++ G + G H+ Y AS
Sbjct: 116 ---------FRVTKE---VLKAGGML-ERGTGRIINIASTGG-----KQGVVHAAPYSAS 157
Query: 199 KAALNQLTKSVSVEFGRKKDPV--ICILLHPGTVDTDLSRPFQRNVPEG 245
K + TK++ +E R V +C PG V+T P +V E
Sbjct: 158 KHGVVGFTKALGLELARTGITVNAVC----PGFVET----PMAASVREH 198
|
Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258 |
| >gnl|CDD|235545 PRK05650, PRK05650, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.002
Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 25/224 (11%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
++ GA+ G+G A + + + +A G L L+ + + D+
Sbjct: 4 MITGAASGLGRAIALRWAREGWRLA-LADVNEEGGEETLKLLREAGGDGF-YQRCDVRDY 61
Query: 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPIL 151
S + A A++ +EK+G +++++N +G+ S E +L + +N +G +
Sbjct: 62 SQLTALAQACEEKWGGIDVIVNNAGVASGGFFE--ELSLEDWD-----WQIAINLMGVVK 114
Query: 152 VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSV 211
K PL K +G ++A +A L SY +KA + L++++ V
Sbjct: 115 GCKAFLPLFKRQKSGRIVNIASMAGLMQGPAM---------SSYNVAKAGVVALSETLLV 165
Query: 212 EFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE-----GKLFTK 250
E D + ++ P T+L F+ P GKL K
Sbjct: 166 EL--ADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKLLEK 207
|
Length = 270 |
| >gnl|CDD|130890 TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Score = 38.0 bits (88), Expect = 0.003
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
A V + NR G +Y A+KA L TK+++VE ++K V CI PG +DT++
Sbjct: 135 ASVSGVMGNR--GQVNYSAAKAGLIGATKALAVELAKRKITVNCIA--PGLIDTEM 186
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|187654 cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.004
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
+ G+S G+GL A+ LL + + V+ R+ A D K P VL DL+
Sbjct: 11 FITGSSDGLGLAAARTLLHQGHE--VVLHARSQKRAA---DAKAACPGAAGVLIGDLSSL 65
Query: 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPIL 151
+ A + G + +I+ +GILS PN P+T + + VN + P +
Sbjct: 66 AETRKLADQVNA-IGRFDAVIHNAGILSGPNRKTPDTGIPAM--------VAVNVLAPYV 116
|
Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 260 |
| >gnl|CDD|187630 cd05372, ENR_SDR, Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.004
Identities = 44/198 (22%), Positives = 74/198 (37%), Gaps = 38/198 (19%)
Query: 37 SRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEA 96
R I AK L E + + T + + L R E VL D++ + I+
Sbjct: 12 DRSIAWGIAKALHEAGAE--LAFTYQPEALRKRVEKLAERLGESALVLPCDVSNDEEIKE 69
Query: 97 SAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNK----VEKSSLMLAYEVNAVGPILV 152
+K+ +G L+ L++ SI P+ L + + A +++A + +
Sbjct: 70 LFAEVKKDWGKLDGLVH-----SIAF--APKVQLKGPFLDTSRKGFLKALDISAYSLVSL 122
Query: 153 IKHMSPLLKVGGT-------GIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
K P++ GG+ G ER VV +G +KAAL
Sbjct: 123 AKAALPIMNPGGSIVTLSYLGSER---VVPGY----NVMGV-----------AKAALESS 164
Query: 206 TKSVSVEFGRKKDPVICI 223
+ ++ E GRK V I
Sbjct: 165 VRYLAYELGRKGIRVNAI 182
|
This bacterial subgroup of ENRs includes Escherichia coli ENR. ENR catalyzes the NAD(P)H-dependent reduction of enoyl-ACP in the last step of fatty acid biosynthesis. De novo fatty acid biosynthesis is catalyzed by the fatty acid synthetase complex, through the serial addition of 2-carbon subunits. In bacteria and plants,ENR catalyzes one of six synthetic steps in this process. Oilseed rape ENR, and also apparently the NADH-specific form of Escherichia coli ENR, is tetrameric. Although similar to the classical SDRs, this group does not have the canonical catalytic tetrad, nor does it have the typical Gly-rich NAD-binding pattern. Such so-called divergent SDRs have a GXXXXXSXA NAD-binding motif and a YXXMXXXK (or YXXXMXXXK) active site motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 282 | |||
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 100.0 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 100.0 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 100.0 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 100.0 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 100.0 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 100.0 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 100.0 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 100.0 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 100.0 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 100.0 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 100.0 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 100.0 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 100.0 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 100.0 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 100.0 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 100.0 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 100.0 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK08643 | 256 | acetoin reductase; Validated | 100.0 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 100.0 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 100.0 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 100.0 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 100.0 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 100.0 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 100.0 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 100.0 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 100.0 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 100.0 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 100.0 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 100.0 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 100.0 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 100.0 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 100.0 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 100.0 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 100.0 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05717 | 255 | oxidoreductase; Validated | 100.0 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 100.0 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 100.0 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 100.0 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 100.0 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 100.0 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 100.0 | |
| PLN00015 | 308 | protochlorophyllide reductase | 100.0 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 100.0 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 100.0 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 100.0 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 100.0 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 100.0 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 100.0 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 100.0 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 100.0 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 100.0 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 100.0 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 100.0 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 100.0 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 100.0 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 100.0 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 100.0 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 100.0 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 100.0 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 100.0 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 100.0 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 100.0 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 100.0 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 100.0 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 100.0 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.98 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.98 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.98 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.97 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.97 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.97 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.97 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.97 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.97 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.97 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.97 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.97 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.97 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.97 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.97 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.96 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.96 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.96 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.95 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.95 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.93 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.92 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 99.91 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.91 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.9 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.86 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.86 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.85 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.83 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.83 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.82 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.8 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.8 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.79 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.77 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.77 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.76 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.76 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.76 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.75 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.75 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.74 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.73 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 99.73 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.72 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.71 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.69 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.68 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.68 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.68 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.67 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.67 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.66 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.66 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.65 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.63 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.62 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.61 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 99.61 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.59 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.55 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.54 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.54 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.52 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.51 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.47 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.47 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.46 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.44 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.44 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.44 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.43 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.43 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.42 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.39 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.38 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.36 | |
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 99.36 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.36 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 99.34 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.32 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.32 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.28 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 99.27 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.25 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.19 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.17 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.16 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.16 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.16 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 99.12 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.1 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.09 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 99.06 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 98.93 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 98.91 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.9 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 98.85 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 98.84 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.83 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 98.79 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 98.78 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 98.7 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 98.7 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.69 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 98.55 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 98.54 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.53 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.51 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 98.5 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 98.34 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 98.22 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.14 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 98.13 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.1 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.09 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 98.05 | |
| PLN00106 | 323 | malate dehydrogenase | 98.02 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.02 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 98.0 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.98 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.9 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 97.89 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.78 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 97.78 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.7 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.66 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 97.65 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.52 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.44 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.43 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.38 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.31 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 97.25 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 97.16 | |
| PF12242 | 78 | Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2 | 97.11 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 97.09 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.05 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.01 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 96.99 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.96 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 96.94 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.91 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.9 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.86 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.85 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.84 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 96.84 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.77 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 96.76 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.67 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 96.65 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.63 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.62 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.62 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.53 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.51 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.47 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.41 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.35 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.31 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.25 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.25 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 96.24 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.24 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.23 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.23 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.23 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.21 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.17 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.17 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.11 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.1 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.05 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 96.03 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.98 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 95.97 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.95 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 95.95 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 95.94 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.94 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 95.92 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.88 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 95.87 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.87 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 95.84 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 95.83 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.83 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.79 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 95.78 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.78 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 95.74 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.72 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.72 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.71 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.65 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 95.6 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 95.53 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.46 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.44 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 95.37 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.37 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.36 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.35 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.33 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 95.29 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 95.25 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 95.23 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.21 | |
| COG3007 | 398 | Uncharacterized paraquat-inducible protein B [Func | 95.19 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 95.17 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.15 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 95.07 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 95.07 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 95.03 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 95.02 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 95.01 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 94.93 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.92 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 94.89 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 94.88 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 94.87 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 94.86 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 94.81 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 94.79 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 94.75 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 94.74 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 94.73 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 94.7 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 94.61 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 94.61 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 94.6 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 94.55 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 94.49 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 94.46 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 94.46 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 94.44 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 94.41 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 94.39 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 94.3 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 94.3 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 94.28 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 94.26 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 94.26 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 94.24 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 94.24 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 94.18 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 94.15 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.14 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 94.12 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 94.03 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 94.02 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 94.01 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.99 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 93.97 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 93.93 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 93.9 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 93.89 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 93.85 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 93.84 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 93.82 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.79 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 93.75 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 93.68 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 93.63 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 93.62 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 93.61 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 93.6 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 93.56 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 93.54 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 93.53 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 93.49 | |
| PRK08223 | 287 | hypothetical protein; Validated | 93.41 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 93.39 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 93.37 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 93.33 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 93.2 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 93.18 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 93.17 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 93.13 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 93.1 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 93.09 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 93.03 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 93.02 | |
| PLN02928 | 347 | oxidoreductase family protein | 92.99 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 92.97 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 92.97 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 92.96 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 92.94 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 92.94 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 92.91 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 92.9 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 92.85 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 92.79 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 92.72 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 92.7 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 92.69 | |
| PLN02602 | 350 | lactate dehydrogenase | 92.67 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 92.65 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 92.58 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.51 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.4 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 92.37 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 92.34 | |
| PLN02494 | 477 | adenosylhomocysteinase | 92.28 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 92.23 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 92.19 | |
| PRK10754 | 327 | quinone oxidoreductase, NADPH-dependent; Provision | 92.12 |
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=280.20 Aligned_cols=219 Identities=24% Similarity=0.327 Sum_probs=198.0
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.+++|+++|||||+|||.++|+.|++.|++ |++.+|..++++++.+.+.+ .++..+..|++|.++++++++.+.++
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~~--vvl~aRR~drL~~la~~~~~--~~~~~~~~DVtD~~~~~~~i~~~~~~ 78 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAGAK--VVLAARREERLEALADEIGA--GAALALALDVTDRAAVEAAIEALPEE 78 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCCCe--EEEEeccHHHHHHHHHhhcc--CceEEEeeccCCHHHHHHHHHHHHHh
Confidence 456799999999999999999999999998 99999999999887776654 68999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
|++||+||||||... ..++.+.+.++|+.++++|+.|.++.+++++|.|.+++.| .|||+||++|..
T Consensus 79 ~g~iDiLvNNAGl~~-------g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G------~IiN~~SiAG~~ 145 (246)
T COG4221 79 FGRIDILVNNAGLAL-------GDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSG------HIINLGSIAGRY 145 (246)
T ss_pred hCcccEEEecCCCCc-------CChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCc------eEEEeccccccc
Confidence 999999999999986 5788899999999999999999999999999999999887 999999999987
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC---------CCCCCCCChHHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN---------VPEGKLFTKEFSVQ 255 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~---------~~~~~~~~~~~~a~ 255 (282)
+ +++...|+++|+++..|++.|+.|+..+ +|||.+|+||.+.|..+...... +.....++|+++|+
T Consensus 146 ~---y~~~~vY~ATK~aV~~fs~~LR~e~~g~--~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y~~~~~l~p~dIA~ 220 (246)
T COG4221 146 P---YPGGAVYGATKAAVRAFSLGLRQELAGT--GIRVTVISPGLVETTEFSTVRFEGDDERADKVYKGGTALTPEDIAE 220 (246)
T ss_pred c---CCCCccchhhHHHHHHHHHHHHHHhcCC--CeeEEEecCceecceecccccCCchhhhHHHHhccCCCCCHHHHHH
Confidence 7 8899999999999999999999999977 99999999999977655543322 12345679999999
Q ss_pred HHHHHHhhcC
Q 023441 256 KLLNIINNIK 265 (282)
Q Consensus 256 ~~~~~~~~~~ 265 (282)
.+.+.++.+.
T Consensus 221 ~V~~~~~~P~ 230 (246)
T COG4221 221 AVLFAATQPQ 230 (246)
T ss_pred HHHHHHhCCC
Confidence 9999998765
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=269.79 Aligned_cols=236 Identities=22% Similarity=0.301 Sum_probs=210.3
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.++.|+++||||++|||+++++.|+++|++ |+..+++...+++....+..++++ ..+.||++++++++..+++..+.
T Consensus 11 r~~sk~~~vtGg~sGIGrAia~~la~~Gar--v~v~dl~~~~A~ata~~L~g~~~h-~aF~~DVS~a~~v~~~l~e~~k~ 87 (256)
T KOG1200|consen 11 RLMSKVAAVTGGSSGIGRAIAQLLAKKGAR--VAVADLDSAAAEATAGDLGGYGDH-SAFSCDVSKAHDVQNTLEEMEKS 87 (256)
T ss_pred HHhcceeEEecCCchHHHHHHHHHHhcCcE--EEEeecchhhHHHHHhhcCCCCcc-ceeeeccCcHHHHHHHHHHHHHh
Confidence 456799999999999999999999999998 999999998888777777766444 56899999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
+|++++||||||+.. ...+..+..++|++.+++|+.|.|.++|++...|...+.. +.+|||+||+.|..
T Consensus 88 ~g~psvlVncAGItr-------D~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~----~~sIiNvsSIVGki 156 (256)
T KOG1200|consen 88 LGTPSVLVNCAGITR-------DGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQ----GLSIINVSSIVGKI 156 (256)
T ss_pred cCCCcEEEEcCcccc-------ccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCC----CceEEeehhhhccc
Confidence 999999999999986 7788899999999999999999999999999985433211 13999999999998
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------CCCCCCCCChHHHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------NVPEGKLFTKEFSVQK 256 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~~~~~~~~~~~~~a~~ 256 (282)
+ .-+...|+++|+++.+|+++.++|++++ +||||.|+||++.|||.+.+.+ ..|..+.-.+||+|..
T Consensus 157 G---N~GQtnYAAsK~GvIgftktaArEla~k--nIrvN~VlPGFI~tpMT~~mp~~v~~ki~~~iPmgr~G~~EevA~~ 231 (256)
T KOG1200|consen 157 G---NFGQTNYAASKGGVIGFTKTAARELARK--NIRVNVVLPGFIATPMTEAMPPKVLDKILGMIPMGRLGEAEEVANL 231 (256)
T ss_pred c---cccchhhhhhcCceeeeeHHHHHHHhhc--CceEeEeccccccChhhhhcCHHHHHHHHccCCccccCCHHHHHHH
Confidence 8 5567889999999999999999999999 9999999999999999886544 4677888899999999
Q ss_pred HHHHHhhcCCCCCCceeecCCcc
Q 023441 257 LLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 257 ~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+.++.++.+++++|+.+.++|+.
T Consensus 232 V~fLAS~~ssYiTG~t~evtGGl 254 (256)
T KOG1200|consen 232 VLFLASDASSYITGTTLEVTGGL 254 (256)
T ss_pred HHHHhccccccccceeEEEeccc
Confidence 99999999999999999999874
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=292.68 Aligned_cols=237 Identities=17% Similarity=0.229 Sum_probs=204.6
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc-CCCceeEEEeeCCChhHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR-FPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~-~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.++++||++|||||++|||+++|++|+++|++ |++++|+.++++...+.+.+ .+.++.++++|++|+++++++++++
T Consensus 3 ~~~l~~k~~lItGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (263)
T PRK08339 3 KIDLSGKLAFTTASSKGIGFGVARVLARAGAD--VILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKEL 80 (263)
T ss_pred ccCCCCCEEEEeCCCCcHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 45689999999999999999999999999988 99999998776655444332 3457899999999999999999998
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
. ++|++|++|||+|... ..+..+.+.++|++.+++|+.+++.+++.+.|.|++++.| +||++||..
T Consensus 81 ~-~~g~iD~lv~nag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g------~Ii~isS~~ 146 (263)
T PRK08339 81 K-NIGEPDIFFFSTGGPK-------PGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFG------RIIYSTSVA 146 (263)
T ss_pred H-hhCCCcEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC------EEEEEcCcc
Confidence 6 5899999999999764 3456678889999999999999999999999999877655 899999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------------ccCC
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------------QRNV 242 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------------~~~~ 242 (282)
+..+ .+....|+++|+++.+|+++++.|++++ ||+||+|+||+++|++.... ....
T Consensus 147 ~~~~---~~~~~~y~asKaal~~l~~~la~el~~~--gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (263)
T PRK08339 147 IKEP---IPNIALSNVVRISMAGLVRTLAKELGPK--GITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKPI 221 (263)
T ss_pred ccCC---CCcchhhHHHHHHHHHHHHHHHHHhccc--CeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhccC
Confidence 7765 6677899999999999999999999998 89999999999999975321 1223
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 243 PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|..+..+|+++|+.+.+++++....++|+.+.+||++.
T Consensus 222 p~~r~~~p~dva~~v~fL~s~~~~~itG~~~~vdgG~~ 259 (263)
T PRK08339 222 PLGRLGEPEEIGYLVAFLASDLGSYINGAMIPVDGGRL 259 (263)
T ss_pred CcccCcCHHHHHHHHHHHhcchhcCccCceEEECCCcc
Confidence 45667799999999999999888999999999999874
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=284.63 Aligned_cols=222 Identities=22% Similarity=0.277 Sum_probs=200.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccc-ccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK-NRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~-~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..+++++++|||||+|||.++|++|+++|++ |++++|++++++++++.+ .+.+-++.++++|+++++++.++.+++.
T Consensus 2 ~~~~~~~~lITGASsGIG~~~A~~lA~~g~~--liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~ 79 (265)
T COG0300 2 GPMKGKTALITGASSGIGAELAKQLARRGYN--LILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELK 79 (265)
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHH
Confidence 3567899999999999999999999999998 999999999999876555 4455689999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+..+.||+||||||... .+++.+.+.++.++++++|+.+...+++++.|.|.+++.| .|+|++|.+|
T Consensus 80 ~~~~~IdvLVNNAG~g~-------~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G------~IiNI~S~ag 146 (265)
T COG0300 80 ERGGPIDVLVNNAGFGT-------FGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAG------HIINIGSAAG 146 (265)
T ss_pred hcCCcccEEEECCCcCC-------ccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------eEEEEechhh
Confidence 99889999999999986 7788899999999999999999999999999999999887 9999999999
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-c---cCCCCCCCCChHHHHHHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-Q---RNVPEGKLFTKEFSVQKLL 258 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-~---~~~~~~~~~~~~~~a~~~~ 258 (282)
..+ .|..+.|++||+++.+|+++|+.|+... ||+|.+++||++.|+|.+.- . ...+....++|+++|+..+
T Consensus 147 ~~p---~p~~avY~ATKa~v~~fSeaL~~EL~~~--gV~V~~v~PG~~~T~f~~~~~~~~~~~~~~~~~~~~~~va~~~~ 221 (265)
T COG0300 147 LIP---TPYMAVYSATKAFVLSFSEALREELKGT--GVKVTAVCPGPTRTEFFDAKGSDVYLLSPGELVLSPEDVAEAAL 221 (265)
T ss_pred cCC---CcchHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEEecCccccccccccccccccccchhhccCHHHHHHHHH
Confidence 987 7888999999999999999999999887 89999999999999999621 1 1223456789999999999
Q ss_pred HHHhhcC
Q 023441 259 NIINNIK 265 (282)
Q Consensus 259 ~~~~~~~ 265 (282)
..+...+
T Consensus 222 ~~l~~~k 228 (265)
T COG0300 222 KALEKGK 228 (265)
T ss_pred HHHhcCC
Confidence 9998765
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=285.71 Aligned_cols=236 Identities=18% Similarity=0.262 Sum_probs=201.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||++|||||++|||+++|++|+++|++ |++.+|+.. +...+.....+.++.++++|++|+++++++++++.+
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~--vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12481 4 FDLNGKVAIITGCNTGLGQGMAIGLAKAGAD--IVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVE 79 (251)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999998 888888643 222233334456899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||+|... ..+..+.+.++|++.+++|+.+++.+++.+.|.|.+++.+ ++||++||..+.
T Consensus 80 ~~g~iD~lv~~ag~~~-------~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~-----g~ii~isS~~~~ 147 (251)
T PRK12481 80 VMGHIDILINNAGIIR-------RQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNG-----GKIINIASMLSF 147 (251)
T ss_pred HcCCCCEEEECCCcCC-------CCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCC-----CEEEEeCChhhc
Confidence 9999999999999864 4556677889999999999999999999999999765432 399999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKEFS 253 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~~ 253 (282)
.+ .+....|++||+++++|+++++.|++++ +|+||+|+||+++|++.+... ...|..+..+|+++
T Consensus 148 ~~---~~~~~~Y~asK~a~~~l~~~la~e~~~~--girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~peev 222 (251)
T PRK12481 148 QG---GIRVPSYTASKSAVMGLTRALATELSQY--NINVNAIAPGYMATDNTAALRADTARNEAILERIPASRWGTPDDL 222 (251)
T ss_pred CC---CCCCcchHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCCccCchhhcccChHHHHHHHhcCCCCCCcCHHHH
Confidence 66 4566799999999999999999999988 899999999999999865322 12345667799999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++.+.+++++....++|+.+.+||++.
T Consensus 223 a~~~~~L~s~~~~~~~G~~i~vdgg~~ 249 (251)
T PRK12481 223 AGPAIFLSSSASDYVTGYTLAVDGGWL 249 (251)
T ss_pred HHHHHHHhCccccCcCCceEEECCCEe
Confidence 999999999888999999999999863
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=290.76 Aligned_cols=238 Identities=19% Similarity=0.251 Sum_probs=196.3
Q ss_pred ccccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
|-++||++|||||+ +|||+++|++|+++|++ |++++|+....+.+.+...+.+.+ .++++|++|.++++++++++
T Consensus 1 ~~l~~k~~lItGas~~~GIG~aiA~~la~~G~~--Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i 77 (274)
T PRK08415 1 MIMKGKKGLIVGVANNKSIAYGIAKACFEQGAE--LAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESL 77 (274)
T ss_pred CccCCcEEEEECCCCCCCHHHHHHHHHHHCCCE--EEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHH
Confidence 45689999999997 79999999999999998 889999853222222222222334 67899999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+++|++|+||||||...... ...++.+.+.++|++.+++|+.+++.+++.+.|.|.++ | +||++||..
T Consensus 78 ~~~~g~iDilVnnAG~~~~~~---~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~--g------~Iv~isS~~ 146 (274)
T PRK08415 78 KKDLGKIDFIVHSVAFAPKEA---LEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG--A------SVLTLSYLG 146 (274)
T ss_pred HHHcCCCCEEEECCccCcccc---cccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC--C------cEEEEecCC
Confidence 999999999999999853100 02456677889999999999999999999999999753 3 899999988
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKE 251 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~ 251 (282)
+..+ .+.+..|++||+++.+|+++++.|++++ +|+||+|+||+++|++.+... ...|..+..+|+
T Consensus 147 ~~~~---~~~~~~Y~asKaal~~l~~~la~el~~~--gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~r~~~pe 221 (274)
T PRK08415 147 GVKY---VPHYNVMGVAKAALESSVRYLAVDLGKK--GIRVNAISAGPIKTLAASGIGDFRMILKWNEINAPLKKNVSIE 221 (274)
T ss_pred CccC---CCcchhhhhHHHHHHHHHHHHHHHhhhc--CeEEEEEecCccccHHHhccchhhHHhhhhhhhCchhccCCHH
Confidence 7655 5677899999999999999999999988 899999999999998753211 123445677999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++++.+.+++++....++|+.+.+||++.
T Consensus 222 dva~~v~fL~s~~~~~itG~~i~vdGG~~ 250 (274)
T PRK08415 222 EVGNSGMYLLSDLSSGVTGEIHYVDAGYN 250 (274)
T ss_pred HHHHHHHHHhhhhhhcccccEEEEcCccc
Confidence 99999999999888899999999999864
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=286.33 Aligned_cols=244 Identities=18% Similarity=0.216 Sum_probs=201.4
Q ss_pred ccccccccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHH
Q 023441 20 ASASVKWKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 20 ~~~~~~~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~ 97 (282)
+...++++||++|||||+ +|||+++|++|+++|++ |++.+|+.+..+.+.+...+. ..+.+++||++|.++++++
T Consensus 2 ~~~~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~--v~l~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~ 78 (258)
T PRK07533 2 MQPLLPLAGKRGLVVGIANEQSIAWGCARAFRALGAE--LAVTYLNDKARPYVEPLAEEL-DAPIFLPLDVREPGQLEAV 78 (258)
T ss_pred CCcccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCE--EEEEeCChhhHHHHHHHHHhh-ccceEEecCcCCHHHHHHH
Confidence 345677899999999998 59999999999999998 888999865432222222222 2356899999999999999
Q ss_pred HHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 98 AKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
++++.+++|++|++|||||.....+ ...++.+.+.++|++.+++|+.+++.+++.+.|.|+++ | +|+++
T Consensus 79 ~~~~~~~~g~ld~lv~nAg~~~~~~---~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~--g------~Ii~i 147 (258)
T PRK07533 79 FARIAEEWGRLDFLLHSIAFAPKED---LHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNG--G------SLLTM 147 (258)
T ss_pred HHHHHHHcCCCCEEEEcCccCCccc---ccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccC--C------EEEEE
Confidence 9999999999999999999863100 12456677889999999999999999999999999642 3 89999
Q ss_pred eccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCC
Q 023441 178 SARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKL 247 (282)
Q Consensus 178 ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~ 247 (282)
||..+..+ .+.+..|+++|+++.+|+++++.|++++ +|+||+|+||+++|++.+... ...+..+.
T Consensus 148 ss~~~~~~---~~~~~~Y~asKaal~~l~~~la~el~~~--gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~ 222 (258)
T PRK07533 148 SYYGAEKV---VENYNLMGPVKAALESSVRYLAAELGPK--GIRVHAISPGPLKTRAASGIDDFDALLEDAAERAPLRRL 222 (258)
T ss_pred eccccccC---CccchhhHHHHHHHHHHHHHHHHHhhhc--CcEEEEEecCCcCChhhhccCCcHHHHHHHHhcCCcCCC
Confidence 99877655 5677899999999999999999999988 899999999999999854321 12344567
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 248 FTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
.+|++++..+++++++....++|+.+.+||++..|
T Consensus 223 ~~p~dva~~~~~L~s~~~~~itG~~i~vdgg~~~~ 257 (258)
T PRK07533 223 VDIDDVGAVAAFLASDAARRLTGNTLYIDGGYHIV 257 (258)
T ss_pred CCHHHHHHHHHHHhChhhccccCcEEeeCCccccc
Confidence 79999999999999888889999999999998766
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=288.12 Aligned_cols=237 Identities=17% Similarity=0.219 Sum_probs=196.6
Q ss_pred cccCcEEEEecCCC--chhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASR--GIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 25 ~~~gk~vlItGas~--giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++||++|||||++ |||+++|++|+++|++ |++.+|+....+...++..+.+. ..++++|++|.++++++++++.
T Consensus 4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~--V~~~~r~~~~~~~~~~~~~~~g~-~~~~~~Dv~d~~~v~~~~~~~~ 80 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAE--LAFTYQGEALGKRVKPLAESLGS-DFVLPCDVEDIASVDAVFEALE 80 (271)
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCE--EEEecCchHHHHHHHHHHHhcCC-ceEEeCCCCCHHHHHHHHHHHH
Confidence 36899999999996 9999999999999998 88888875433333333222232 3578999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+++|++|+||||||...... ...++.+.+.++|++.+++|+.+++.+++.+.|.|.++ | +||++||..+
T Consensus 81 ~~~g~iD~lVnnAG~~~~~~---~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~--G------~Iv~isS~~~ 149 (271)
T PRK06505 81 KKWGKLDFVVHAIGFSDKNE---LKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDG--G------SMLTLTYGGS 149 (271)
T ss_pred HHhCCCCEEEECCccCCCcc---ccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccC--c------eEEEEcCCCc
Confidence 99999999999999863100 01356678889999999999999999999999999742 3 8999999987
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~ 252 (282)
..+ .+.+..|+++|+++.+|+++|+.|++++ +|+||+|+||+++|++..... ...|..+..+|++
T Consensus 150 ~~~---~~~~~~Y~asKaAl~~l~r~la~el~~~--gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pee 224 (271)
T PRK06505 150 TRV---MPNYNVMGVAKAALEASVRYLAADYGPQ--GIRVNAISAGPVRTLAGAGIGDARAIFSYQQRNSPLRRTVTIDE 224 (271)
T ss_pred ccc---CCccchhhhhHHHHHHHHHHHHHHHhhc--CeEEEEEecCCccccccccCcchHHHHHHHhhcCCccccCCHHH
Confidence 665 5677899999999999999999999998 899999999999999754221 1234456679999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+.+++++++....++|+.+.+||++.
T Consensus 225 va~~~~fL~s~~~~~itG~~i~vdgG~~ 252 (271)
T PRK06505 225 VGGSALYLLSDLSSGVTGEIHFVDSGYN 252 (271)
T ss_pred HHHHHHHHhCccccccCceEEeecCCcc
Confidence 9999999999888899999999999863
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=283.53 Aligned_cols=198 Identities=23% Similarity=0.348 Sum_probs=178.0
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC-CC-ceeEEEeeCCChhHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-PE-RLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~-~~-~v~~~~~Dls~~~~~~~~~ 98 (282)
.....+.||+|+|||||+|||.++|++|+++|++ ++++.|..++++.+.+++.+. +. ++++++||++|++++++++
T Consensus 5 ~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~--l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~ 82 (282)
T KOG1205|consen 5 LFMERLAGKVVLITGASSGIGEALAYELAKRGAK--LVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFV 82 (282)
T ss_pred ccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCc--eEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHH
Confidence 4456789999999999999999999999999999 999999999998874444433 33 4999999999999999999
Q ss_pred HHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 99 KSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
+++.+.||++|+||||||+.. .......+.+++...|++|++|+..++++++|.|++++.| +||++|
T Consensus 83 ~~~~~~fg~vDvLVNNAG~~~-------~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~G------hIVvis 149 (282)
T KOG1205|consen 83 EWAIRHFGRVDVLVNNAGISL-------VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDG------HIVVIS 149 (282)
T ss_pred HHHHHhcCCCCEEEecCcccc-------ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCC------eEEEEe
Confidence 999999999999999999985 5566677788999999999999999999999999998866 999999
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP 237 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~ 237 (282)
|++|..+ .|....|++||+|+.+|+.+|+.|+...+..|++ +|+||+|+|++...
T Consensus 150 SiaG~~~---~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i-~V~PG~V~Te~~~~ 204 (282)
T KOG1205|consen 150 SIAGKMP---LPFRSIYSASKHALEGFFETLRQELIPLGTIIII-LVSPGPIETEFTGK 204 (282)
T ss_pred ccccccC---CCcccccchHHHHHHHHHHHHHHHhhccCceEEE-EEecCceeecccch
Confidence 9999988 6777799999999999999999999999767888 99999999997654
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=276.37 Aligned_cols=225 Identities=19% Similarity=0.290 Sum_probs=205.0
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
...|.+|++||||||++|||+++|++||++|+. +++.+.|.+..++..+..++.| +++.+.||+|+.+++.+..+++
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~--~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAK--LVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCCe--EEEEeccccchHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHH
Confidence 778899999999999999999999999999997 9999999999888777776554 8999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
+++.|+||+||||||+.. ..++.+.+.+++++++++|+.|+|+.+++|+|.|.+...| +||+++|..
T Consensus 109 k~e~G~V~ILVNNAGI~~-------~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~G------HIV~IaS~a 175 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVT-------GKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNG------HIVTIASVA 175 (300)
T ss_pred HHhcCCceEEEecccccc-------CCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCc------eEEEehhhh
Confidence 999999999999999996 7788889999999999999999999999999999998876 999999999
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCC-CeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKD-PVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNI 260 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~-~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 260 (282)
|..+ .++...|++||+|+.+|+++|..|+...+. +|+..+++|++++|.|.+.-.+.......++|+++|+.++..
T Consensus 176 G~~g---~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf~~~~~~~~l~P~L~p~~va~~Iv~a 252 (300)
T KOG1201|consen 176 GLFG---PAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMFDGATPFPTLAPLLEPEYVAKRIVEA 252 (300)
T ss_pred cccC---CccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccccccCCCCCCccccCCCCHHHHHHHHHHH
Confidence 9988 788899999999999999999999887765 499999999999999998744445556678999999999988
Q ss_pred HhhcC
Q 023441 261 INNIK 265 (282)
Q Consensus 261 ~~~~~ 265 (282)
+....
T Consensus 253 i~~n~ 257 (300)
T KOG1201|consen 253 ILTNQ 257 (300)
T ss_pred HHcCC
Confidence 87543
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=283.60 Aligned_cols=240 Identities=22% Similarity=0.298 Sum_probs=206.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||++|||||++|||++++++|+++|++ |++++|+.++.+...+.+...+.++.++.+|++|+++++++++++.+
T Consensus 5 ~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 5 FDLHGKRALITGASTGIGKRVALAYVEAGAQ--VAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999999999988 99999998877766665555566889999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|+||||+|... ..+..+.+.++|++.+++|+.+++.+++.+.|.|.+++.+ +.|+++||..+.
T Consensus 83 ~~g~id~lv~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-----g~iv~~sS~~~~ 150 (253)
T PRK05867 83 ELGGIDIAVCNAGIIT-------VTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQG-----GVIINTASMSGH 150 (253)
T ss_pred HhCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCC-----cEEEEECcHHhc
Confidence 9999999999999864 4456677789999999999999999999999999776432 389999998775
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------ccCCCCCCCCChHHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------QRNVPEGKLFTKEFSVQK 256 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------~~~~~~~~~~~~~~~a~~ 256 (282)
.... .+....|+++|+++++|+++++.|++++ +|+||+|+||+++|++.+.. ....+..+..+|+++|+.
T Consensus 151 ~~~~-~~~~~~Y~asKaal~~~~~~la~e~~~~--gI~vn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~r~~~p~~va~~ 227 (253)
T PRK05867 151 IINV-PQQVSHYCASKAAVIHLTKAMAVELAPH--KIRVNSVSPGYILTELVEPYTEYQPLWEPKIPLGRLGRPEELAGL 227 (253)
T ss_pred CCCC-CCCccchHHHHHHHHHHHHHHHHHHhHh--CeEEEEeecCCCCCcccccchHHHHHHHhcCCCCCCcCHHHHHHH
Confidence 4311 1235789999999999999999999988 89999999999999986532 123455677899999999
Q ss_pred HHHHHhhcCCCCCCceeecCCccc
Q 023441 257 LLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 257 ~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++++++....++|+.+.+||++.
T Consensus 228 ~~~L~s~~~~~~tG~~i~vdgG~~ 251 (253)
T PRK05867 228 YLYLASEASSYMTGSDIVIDGGYT 251 (253)
T ss_pred HHHHcCcccCCcCCCeEEECCCcc
Confidence 999999888999999999999863
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=281.88 Aligned_cols=242 Identities=21% Similarity=0.292 Sum_probs=207.4
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc-ccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG-ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~-~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.++++||+++||||++|||+++|++|+++|++ |++++|+.+. .+...+.+...+.++.++++|++|+++++++++++
T Consensus 3 ~~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~--v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~ 80 (254)
T PRK06114 3 LFDLDGQVAFVTGAGSGIGQRIAIGLAQAGAD--VALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVART 80 (254)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999999987 8899987653 34444444444568899999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+.++++|++|||+|... ..+..+.+.++|++.+++|+.+++.+++.+.|.|.+++.+ +||++||..
T Consensus 81 ~~~~g~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~isS~~ 147 (254)
T PRK06114 81 EAELGALTLAVNAAGIAN-------ANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGG------SIVNIASMS 147 (254)
T ss_pred HHHcCCCCEEEECCCCCC-------CCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCc------EEEEECchh
Confidence 999999999999999874 4456677889999999999999999999999999876554 999999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc---------cccCCCCCCCCChHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP---------FQRNVPEGKLFTKEF 252 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~---------~~~~~~~~~~~~~~~ 252 (282)
+..+.++ .....|+++|+++++++++++.|+.++ +|+||+|+||+++|++... +....|..+..+|++
T Consensus 148 ~~~~~~~-~~~~~Y~~sKaa~~~l~~~la~e~~~~--gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~p~~r~~~~~d 224 (254)
T PRK06114 148 GIIVNRG-LLQAHYNASKAGVIHLSKSLAMEWVGR--GIRVNSISPGYTATPMNTRPEMVHQTKLFEEQTPMQRMAKVDE 224 (254)
T ss_pred hcCCCCC-CCcchHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEeecCccCcccccccchHHHHHHHhcCCCCCCcCHHH
Confidence 8765321 235789999999999999999999988 8999999999999998642 112345567789999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
++..+++++++....++|+.+.+||++..|
T Consensus 225 va~~~~~l~s~~~~~~tG~~i~~dgg~~~~ 254 (254)
T PRK06114 225 MVGPAVFLLSDAASFCTGVDLLVDGGFVCW 254 (254)
T ss_pred HHHHHHHHcCccccCcCCceEEECcCEecC
Confidence 999999999988899999999999999998
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=281.74 Aligned_cols=239 Identities=19% Similarity=0.223 Sum_probs=197.0
Q ss_pred ccccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCCCc--ccccccccccCCCceeEEEeeCCChhHHHHHHH
Q 023441 24 VKWKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNG--ATGLLDLKNRFPERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 24 ~~~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~~~--~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
++++||+++||||+ +|||+++|++|+++|++ |++.+|+.+. .++..+.+.+.+.++.++++|++|+++++++++
T Consensus 2 ~~l~~k~~lItGas~~~GIG~aia~~la~~G~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~ 79 (258)
T PRK07370 2 LDLTGKKALVTGIANNRSIAWGIAQQLHAAGAE--LGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFE 79 (258)
T ss_pred cccCCcEEEEeCCCCCCchHHHHHHHHHHCCCE--EEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHH
Confidence 46789999999986 89999999999999998 7777765432 222222222223457789999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.+++|++|++|||+|...... ...++.+.+.++|++.+++|+.+++.+++.+.|.|.++ | +||++||
T Consensus 80 ~~~~~~g~iD~lv~nag~~~~~~---~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~--g------~Iv~isS 148 (258)
T PRK07370 80 TIKQKWGKLDILVHCLAFAGKEE---LIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEG--G------SIVTLTY 148 (258)
T ss_pred HHHHHcCCCCEEEEcccccCccc---ccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhC--C------eEEEEec
Confidence 99999999999999999753100 12456778889999999999999999999999999753 3 8999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCC
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFT 249 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~ 249 (282)
..+..+ .+.+..|+++|+++.+|+++|+.|++++ +|+||+|+||+++|++.+.+. ...+..+..+
T Consensus 149 ~~~~~~---~~~~~~Y~asKaal~~l~~~la~el~~~--gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~ 223 (258)
T PRK07370 149 LGGVRA---IPNYNVMGVAKAALEASVRYLAAELGPK--NIRVNAISAGPIRTLASSAVGGILDMIHHVEEKAPLRRTVT 223 (258)
T ss_pred cccccC---CcccchhhHHHHHHHHHHHHHHHHhCcC--CeEEEEEecCcccCchhhccccchhhhhhhhhcCCcCcCCC
Confidence 887765 6778899999999999999999999988 899999999999999754221 1224456778
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+|+++.+.+++++....++|+.+.+||++.
T Consensus 224 ~~dva~~~~fl~s~~~~~~tG~~i~vdgg~~ 254 (258)
T PRK07370 224 QTEVGNTAAFLLSDLASGITGQTIYVDAGYC 254 (258)
T ss_pred HHHHHHHHHHHhChhhccccCcEEEECCccc
Confidence 9999999999999888999999999999864
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=280.33 Aligned_cols=235 Identities=19% Similarity=0.226 Sum_probs=197.0
Q ss_pred cccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 25 ~~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++||+++||||+ +|||+++|++|+++|++ |++.+|+. +.++..+... +.++.+++||++|+++++++++++.
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~--Vi~~~r~~-~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~ 78 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGAT--VIYTYQND-RMKKSLQKLV--DEEDLLVECDVASDESIERAFATIK 78 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCE--EEEecCch-HHHHHHHhhc--cCceeEEeCCCCCHHHHHHHHHHHH
Confidence 3689999999999 79999999999999988 99999984 3322222221 2468899999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|++|||||...... ...++.+.+.++|+..+++|+.+++.+++.+.|.|.++ | +||++||..+
T Consensus 79 ~~~g~iD~lv~nAg~~~~~~---~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~--g------~Iv~iss~~~ 147 (252)
T PRK06079 79 ERVGKIDGIVHAIAYAKKEE---LGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPG--A------SIVTLTYFGS 147 (252)
T ss_pred HHhCCCCEEEEccccccccc---ccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccC--c------eEEEEeccCc
Confidence 99999999999999864100 02456677889999999999999999999999998642 3 8999999887
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~ 252 (282)
..+ .+.+..|+++|+++.+|+++++.|++++ +|+||+|+||+++|++..... ...|..+..+|++
T Consensus 148 ~~~---~~~~~~Y~asKaal~~l~~~la~el~~~--gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~ped 222 (252)
T PRK06079 148 ERA---IPNYNVMGIAKAALESSVRYLARDLGKK--GIRVNAISAGAVKTLAVTGIKGHKDLLKESDSRTVDGVGVTIEE 222 (252)
T ss_pred ccc---CCcchhhHHHHHHHHHHHHHHHHHhhhc--CcEEEEEecCcccccccccCCChHHHHHHHHhcCcccCCCCHHH
Confidence 765 5677899999999999999999999988 899999999999999754321 1234567789999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+.+.+++++....++|+.+.+||++.
T Consensus 223 va~~~~~l~s~~~~~itG~~i~vdgg~~ 250 (252)
T PRK06079 223 VGNTAAFLLSDLSTGVTGDIIYVDKGVH 250 (252)
T ss_pred HHHHHHHHhCcccccccccEEEeCCcee
Confidence 9999999999888999999999999853
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=280.21 Aligned_cols=238 Identities=25% Similarity=0.299 Sum_probs=205.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||+++||||++|||++++++|+++|++ |++.+|++++.+.+.+.+...+.++.++.+|++|+++++++++++.+
T Consensus 2 ~~~~~k~~lItGas~giG~~ia~~l~~~G~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T PRK07478 2 MRLNGKVAIITGASSGIGRAAAKLFAREGAK--VVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVE 79 (254)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999999999997 99999998877766555555566899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|++|||||... +..+..+.+.++|++.+++|+.+++.+++.+.|.|.+++.+ +||++||..+.
T Consensus 80 ~~~~id~li~~ag~~~------~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~------~iv~~sS~~~~ 147 (254)
T PRK07478 80 RFGGLDIAFNNAGTLG------EMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGG------SLIFTSTFVGH 147 (254)
T ss_pred hcCCCCEEEECCCCCC------CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------eEEEEechHhh
Confidence 9999999999999863 13455677889999999999999999999999999877654 89999998775
Q ss_pred -cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------CCCCCCCCChHH
Q 023441 184 -IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------NVPEGKLFTKEF 252 (282)
Q Consensus 184 -~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------~~~~~~~~~~~~ 252 (282)
.+ .++...|++||++++.++++++.|+++. +|+|++|+||+++|++.+.... ..+.....+|++
T Consensus 148 ~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (254)
T PRK07478 148 TAG---FPGMAAYAASKAGLIGLTQVLAAEYGAQ--GIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLHALKRMAQPEE 222 (254)
T ss_pred ccC---CCCcchhHHHHHHHHHHHHHHHHHHhhc--CEEEEEEeeCcccCcccccccCCHHHHHHHHhcCCCCCCcCHHH
Confidence 23 5677899999999999999999999987 8999999999999997653311 123445679999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++.+++++++....++|+.+.+||++.
T Consensus 223 va~~~~~l~s~~~~~~~G~~~~~dgg~~ 250 (254)
T PRK07478 223 IAQAALFLASDAASFVTGTALLVDGGVS 250 (254)
T ss_pred HHHHHHHHcCchhcCCCCCeEEeCCchh
Confidence 9999999998888899999999999864
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=281.51 Aligned_cols=238 Identities=16% Similarity=0.170 Sum_probs=195.2
Q ss_pred ccccCcEEEEecCCC--chhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASR--GIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~--giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
-.++||+++||||++ |||+++|++|+++|++ |++.+|+....+.+.++..+.+.. .+++||++|+++++++++.+
T Consensus 4 ~~~~~k~~lITGas~~~GIG~a~a~~la~~G~~--v~~~~r~~~~~~~~~~l~~~~g~~-~~~~~Dv~~~~~v~~~~~~~ 80 (260)
T PRK06603 4 GLLQGKKGLITGIANNMSISWAIAQLAKKHGAE--LWFTYQSEVLEKRVKPLAEEIGCN-FVSELDVTNPKSISNLFDDI 80 (260)
T ss_pred cccCCcEEEEECCCCCcchHHHHHHHHHHcCCE--EEEEeCchHHHHHHHHHHHhcCCc-eEEEccCCCHHHHHHHHHHH
Confidence 456899999999997 9999999999999988 888888743222233333332333 46799999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+++|++|+||||+|...... ...++.+.+.++|++.+++|+.+++.+++.+.|.|.++ | +||++||..
T Consensus 81 ~~~~g~iDilVnnag~~~~~~---~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~--G------~Iv~isS~~ 149 (260)
T PRK06603 81 KEKWGSFDFLLHGMAFADKNE---LKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDG--G------SIVTLTYYG 149 (260)
T ss_pred HHHcCCccEEEEccccCCccc---ccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccC--c------eEEEEecCc
Confidence 999999999999999753100 02345677889999999999999999999999999642 3 899999988
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCChH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTKE 251 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~~~ 251 (282)
+..+ .+.+..|++||+++.+|+++++.|++++ +|+||+|+||+++|++.+.. ....|..+...|+
T Consensus 150 ~~~~---~~~~~~Y~asKaal~~l~~~la~el~~~--gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pe 224 (260)
T PRK06603 150 AEKV---IPNYNVMGVAKAALEASVKYLANDMGEN--NIRVNAISAGPIKTLASSAIGDFSTMLKSHAATAPLKRNTTQE 224 (260)
T ss_pred cccC---CCcccchhhHHHHHHHHHHHHHHHhhhc--CeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcCCcCCCCCHH
Confidence 7655 5677899999999999999999999988 89999999999999974321 1123556677999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++|+.+.+++++....++|+.+.+||++.
T Consensus 225 dva~~~~~L~s~~~~~itG~~i~vdgG~~ 253 (260)
T PRK06603 225 DVGGAAVYLFSELSKGVTGEIHYVDCGYN 253 (260)
T ss_pred HHHHHHHHHhCcccccCcceEEEeCCccc
Confidence 99999999999888899999999999864
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=281.88 Aligned_cols=236 Identities=24% Similarity=0.347 Sum_probs=202.5
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++||++|||||++|||+++|++|+++|++ |++++|+ ++.++..+.+.+.+.++.++++|++++++++++++++.+++
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~--vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAY--VLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 67999999999999999999999999988 9999998 65555544444455689999999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
+++|+||||||... ...+..+.+.+.|++.+++|+.+++.+++.+.|.+++++ | +||++||..+..+
T Consensus 81 g~id~li~~Ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g------~iv~isS~~~~~~ 147 (272)
T PRK08589 81 GRVDVLFNNAGVDN------AAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-G------SIINTSSFSGQAA 147 (272)
T ss_pred CCcCEEEECCCCCC------CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-C------EEEEeCchhhcCC
Confidence 99999999999863 123455677889999999999999999999999998654 3 8999999987765
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------------CCCCCCCCC
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------------NVPEGKLFT 249 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------------~~~~~~~~~ 249 (282)
.+....|+++|++++.|+++++.|+++. +|+||+|+||+++|++.+.... ..+..+..+
T Consensus 148 ---~~~~~~Y~asKaal~~l~~~la~e~~~~--gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (272)
T PRK08589 148 ---DLYRSGYNAAKGAVINFTKSIAIEYGRD--GIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQKWMTPLGRLGK 222 (272)
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhhhc--CeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhhccCCCCCCcC
Confidence 4566899999999999999999999988 8999999999999998653211 123445678
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
|+++++.+++++++....++|+.+.+||+.+.|
T Consensus 223 ~~~va~~~~~l~s~~~~~~~G~~i~vdgg~~~~ 255 (272)
T PRK08589 223 PEEVAKLVVFLASDDSSFITGETIRIDGGVMAY 255 (272)
T ss_pred HHHHHHHHHHHcCchhcCcCCCEEEECCCcccC
Confidence 999999999999988889999999999997654
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=280.40 Aligned_cols=239 Identities=17% Similarity=0.230 Sum_probs=197.5
Q ss_pred ccccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC-CCceeEEEeeCCChhHHHHHHHH
Q 023441 24 VKWKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-PERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 24 ~~~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~-~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
++++||+++||||+ +|||+++|++|+++|++ |++.+|+....+.+.+...+. +.++.++++|++|++++++++++
T Consensus 3 ~~~~~k~~lItGa~~s~GIG~aia~~la~~G~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 80 (257)
T PRK08594 3 LSLEGKTYVVMGVANKRSIAWGIARSLHNAGAK--LVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFET 80 (257)
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHCCCE--EEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHH
Confidence 46789999999997 89999999999999998 888887643222222222222 35788999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.+++|++|++|||+|...... ...++.+.+.++|.+.+++|+.+.+.+++.+.|.|.++ | +||++||.
T Consensus 81 ~~~~~g~ld~lv~nag~~~~~~---~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--g------~Iv~isS~ 149 (257)
T PRK08594 81 IKEEVGVIHGVAHCIAFANKED---LRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEG--G------SIVTLTYL 149 (257)
T ss_pred HHHhCCCccEEEECcccCCCCc---CCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccC--c------eEEEEccc
Confidence 9999999999999999763110 12345677888999999999999999999999999642 3 89999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCCh
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTK 250 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~~ 250 (282)
.+..+ .+.+..|++||+++.+|+++++.|++++ +|+||+|+||+++|++.+.. ....+..+..+|
T Consensus 150 ~~~~~---~~~~~~Y~asKaal~~l~~~la~el~~~--gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p 224 (257)
T PRK08594 150 GGERV---VQNYNVMGVAKASLEASVKYLANDLGKD--GIRVNAISAGPIRTLSAKGVGGFNSILKEIEERAPLRRTTTQ 224 (257)
T ss_pred CCccC---CCCCchhHHHHHHHHHHHHHHHHHhhhc--CCEEeeeecCcccCHhHhhhccccHHHHHHhhcCCccccCCH
Confidence 88766 5677899999999999999999999988 89999999999999874321 112244567799
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++++.+.+++++....++|+.+.+||++.
T Consensus 225 ~~va~~~~~l~s~~~~~~tG~~~~~dgg~~ 254 (257)
T PRK08594 225 EEVGDTAAFLFSDLSRGVTGENIHVDSGYH 254 (257)
T ss_pred HHHHHHHHHHcCcccccccceEEEECCchh
Confidence 999999999999888999999999999864
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=279.10 Aligned_cols=236 Identities=20% Similarity=0.272 Sum_probs=203.6
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc--CCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR--FPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~--~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
+++||+++||||++|||++++++|+++|++ |++++|+.+..++..+.+.. .+.++.++++|++|+++++++++++.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~--vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAA--VALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE 81 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 367999999999999999999999999988 99999998777665544443 35578999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+.++++|++|||||... ..+..+.+.++|+..+++|+.+++.+++.+.|.|.+++.| +||++||..+
T Consensus 82 ~~~g~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g------~iv~isS~~~ 148 (260)
T PRK07063 82 EAFGPLDVLVNNAGINV-------FADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRG------SIVNIASTHA 148 (260)
T ss_pred HHhCCCcEEEECCCcCC-------CCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCe------EEEEECChhh
Confidence 99999999999999864 3344566778999999999999999999999999876554 9999999987
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------------cCCCCCCCC
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------------RNVPEGKLF 248 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------------~~~~~~~~~ 248 (282)
..+ .++...|+++|+++++|+++++.|+++. +|+||+|+||+++|++...+. ...+..+..
T Consensus 149 ~~~---~~~~~~Y~~sKaa~~~~~~~la~el~~~--gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 223 (260)
T PRK07063 149 FKI---IPGCFPYPVAKHGLLGLTRALGIEYAAR--NVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQPMKRIG 223 (260)
T ss_pred ccC---CCCchHHHHHHHHHHHHHHHHHHHhCcc--CeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcCCCCCCC
Confidence 766 5667889999999999999999999988 899999999999999854321 113445667
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+++|+.+.+++++....++|+.+.+||++.
T Consensus 224 ~~~~va~~~~fl~s~~~~~itG~~i~vdgg~~ 255 (260)
T PRK07063 224 RPEEVAMTAVFLASDEAPFINATCITIDGGRS 255 (260)
T ss_pred CHHHHHHHHHHHcCccccccCCcEEEECCCee
Confidence 99999999999999888899999999999864
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=281.41 Aligned_cols=239 Identities=18% Similarity=0.247 Sum_probs=196.2
Q ss_pred ccccccCcEEEEecC--CCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc--------C--C---CceeEEEe
Q 023441 22 ASVKWKGGVSLVQGA--SRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR--------F--P---ERLDVLQL 86 (282)
Q Consensus 22 ~~~~~~gk~vlItGa--s~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~--------~--~---~~v~~~~~ 86 (282)
.+++++||++||||| ++|||+++|+.|+++|++ |++ +|+.++++.....+.+ . + .....+++
T Consensus 3 ~~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~--Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (303)
T PLN02730 3 LPIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAE--ILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPL 79 (303)
T ss_pred CCcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCE--EEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeec
Confidence 567899999999999 899999999999999998 777 7877766554322211 0 1 12568899
Q ss_pred eC--CCh------------------hHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhh
Q 023441 87 DL--TVE------------------STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146 (282)
Q Consensus 87 Dl--s~~------------------~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 146 (282)
|+ ++. ++++++++++.+++|++|+||||||.... ...++.+.+.++|++.+++|+
T Consensus 80 D~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~-----~~~~~~~~~~e~~~~~~~vN~ 154 (303)
T PLN02730 80 DAVFDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPE-----VTKPLLETSRKGYLAAISASS 154 (303)
T ss_pred ceecCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCcccc-----CCCChhhCCHHHHHHHHHHHh
Confidence 99 433 48999999999999999999999986420 125677788999999999999
Q ss_pred cHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCCCc-ccchhhHHHHHHHHHHHHHHhcc-CCCCeEEEE
Q 023441 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGW-HSYRASKAALNQLTKSVSVEFGR-KKDPVICIL 224 (282)
Q Consensus 147 ~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~-~~Y~~sKa~~~~l~~~la~e~~~-~~~~i~v~~ 224 (282)
.+++.+++.+.|.|.++ | +||++||..+..+ .+.+ ..|+++|+++.+|+++|+.|+++ + +|+||+
T Consensus 155 ~~~~~l~~~~~p~m~~~--G------~II~isS~a~~~~---~p~~~~~Y~asKaAl~~l~~~la~El~~~~--gIrVn~ 221 (303)
T PLN02730 155 YSFVSLLQHFGPIMNPG--G------ASISLTYIASERI---IPGYGGGMSSAKAALESDTRVLAFEAGRKY--KIRVNT 221 (303)
T ss_pred HHHHHHHHHHHHHHhcC--C------EEEEEechhhcCC---CCCCchhhHHHHHHHHHHHHHHHHHhCcCC--CeEEEE
Confidence 99999999999999764 3 8999999988765 4444 47999999999999999999985 6 899999
Q ss_pred EecccccCCCCcccc----------cCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 225 LHPGTVDTDLSRPFQ----------RNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 225 i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
|+||+++|++.+.+. ...+..+...|++++..+.+++++....++|+.+.+||+...
T Consensus 222 V~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~r~~~peevA~~~~fLaS~~a~~itG~~l~vdGG~~~ 288 (303)
T PLN02730 222 ISAGPLGSRAAKAIGFIDDMIEYSYANAPLQKELTADEVGNAAAFLASPLASAITGATIYVDNGLNA 288 (303)
T ss_pred EeeCCccCchhhcccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEEECCCccc
Confidence 999999999875421 123445677999999999999998889999999999998653
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=278.20 Aligned_cols=238 Identities=16% Similarity=0.190 Sum_probs=194.5
Q ss_pred ccCcEEEEecC--CCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGA--SRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGa--s~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++||+++|||| ++|||+++|++|+++|++ |++.+|+....+.+.+...+.+ ....++||++|.++++++++++.+
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~--v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAE--LAFTYVVDKLEERVRKMAAELD-SELVFRCDVASDDEINQVFADLGK 80 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCE--EEEEcCcHHHHHHHHHHHhccC-CceEEECCCCCHHHHHHHHHHHHH
Confidence 67999999997 679999999999999998 8888776432222333332222 356789999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|++|||||+...... ....+.+.+.++|+..+++|+.+++.+++.+.|.|++++ | .||++||..+.
T Consensus 81 ~~g~iD~lVnnAG~~~~~~~--~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~-g------~Iv~iss~~~~ 151 (261)
T PRK08690 81 HWDGLDGLVHSIGFAPKEAL--SGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRN-S------AIVALSYLGAV 151 (261)
T ss_pred HhCCCcEEEECCccCCcccc--ccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcC-c------EEEEEcccccc
Confidence 99999999999998641000 011234567788999999999999999999999986543 3 89999998877
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKEFS 253 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~~ 253 (282)
.+ .+++..|+++|+++.+|+++++.|++++ +|+||+|+||+++|++.+... ...|..+..+|+|+
T Consensus 152 ~~---~~~~~~Y~asKaal~~l~~~la~e~~~~--gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~peev 226 (261)
T PRK08690 152 RA---IPNYNVMGMAKASLEAGIRFTAACLGKE--GIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPLRRNVTIEEV 226 (261)
T ss_pred cC---CCCcccchhHHHHHHHHHHHHHHHhhhc--CeEEEEEecCcccchhhhcCCchHHHHHHHhhcCCCCCCCCHHHH
Confidence 65 6778899999999999999999999998 899999999999999754321 12355667799999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+.+.+++++....++|+.+.+||++.
T Consensus 227 A~~v~~l~s~~~~~~tG~~i~vdgG~~ 253 (261)
T PRK08690 227 GNTAAFLLSDLSSGITGEITYVDGGYS 253 (261)
T ss_pred HHHHHHHhCcccCCcceeEEEEcCCcc
Confidence 999999999888999999999999864
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=279.93 Aligned_cols=236 Identities=17% Similarity=0.223 Sum_probs=193.6
Q ss_pred ccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++||++|||||+ +|||+++|++|+++|++ |++.+|+....+.+.++..+.+ ....+++|++|+++++++++++.+
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~--V~l~~r~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~ 84 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGAE--LAFTYQGDALKKRVEPLAAELG-AFVAGHCDVTDEASIDAVFETLEK 84 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCCE--EEEEcCchHHHHHHHHHHHhcC-CceEEecCCCCHHHHHHHHHHHHH
Confidence 468999999997 89999999999999998 8888886432222333322222 356789999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|++|||||+..... ...++.+.+.++|++.+++|+.+++.+++.+.|.|.++ | +||++||..+.
T Consensus 85 ~~g~iD~lv~nAG~~~~~~---~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~--g------~Iv~iss~~~~ 153 (272)
T PRK08159 85 KWGKLDFVVHAIGFSDKDE---LTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDG--G------SILTLTYYGAE 153 (272)
T ss_pred hcCCCcEEEECCcccCccc---cccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCC--c------eEEEEeccccc
Confidence 9999999999999864110 02355677889999999999999999999999988643 3 89999998766
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKEFS 253 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~~ 253 (282)
.+ .+.+..|++||+++.+|+++++.|++++ +|+||+|+||+++|++.+... ...|..+..+|+|+
T Consensus 154 ~~---~p~~~~Y~asKaal~~l~~~la~el~~~--gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~peev 228 (272)
T PRK08159 154 KV---MPHYNVMGVAKAALEASVKYLAVDLGPK--NIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRRTVTIEEV 228 (272)
T ss_pred cC---CCcchhhhhHHHHHHHHHHHHHHHhccc--CeEEEEeecCCcCCHHHhcCCcchHHHHHHHhCCcccccCCHHHH
Confidence 54 6778899999999999999999999988 899999999999998753211 12344566799999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+.+++++++....++|+.+.+||++.
T Consensus 229 A~~~~~L~s~~~~~itG~~i~vdgG~~ 255 (272)
T PRK08159 229 GDSALYLLSDLSRGVTGEVHHVDSGYH 255 (272)
T ss_pred HHHHHHHhCccccCccceEEEECCCce
Confidence 999999999888899999999999963
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=277.60 Aligned_cols=236 Identities=22% Similarity=0.293 Sum_probs=203.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc-cCC-CceeEEEeeCCChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN-RFP-ERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~-~~~-~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.+++||+++||||++|||++++++|+++|++ |++++|+.++++...+.+. ..+ .++.++++|++|.++++++++++
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGAS--VAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAV 81 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 4688999999999999999999999999998 9999999887766444333 222 47889999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+.++++|++|||||... ..++.+.+.++|++.+++|+.+++.+++.+.|.|++++.| +|+++||..
T Consensus 82 ~~~~g~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g------~iv~isS~~ 148 (265)
T PRK07062 82 EARFGGVDMLVNNAGQGR-------VSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAA------SIVCVNSLL 148 (265)
T ss_pred HHhcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCc------EEEEecccc
Confidence 999999999999999864 4556677888999999999999999999999999877554 999999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------------------cC
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------------------RN 241 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------------------~~ 241 (282)
+..+ .+....|+++|+++.+|+++++.|+++. +|+||+|+||+++|++..... ..
T Consensus 149 ~~~~---~~~~~~y~asKaal~~~~~~la~e~~~~--gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (265)
T PRK07062 149 ALQP---EPHMVATSAARAGLLNLVKSLATELAPK--GVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKG 223 (265)
T ss_pred ccCC---CCCchHhHHHHHHHHHHHHHHHHHhhhc--CeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCC
Confidence 8766 5667899999999999999999999988 899999999999999754210 12
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 242 VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.+..+..+|+++|+.+.+++++....++|+.+.+||++
T Consensus 224 ~p~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgg~ 261 (265)
T PRK07062 224 IPLGRLGRPDEAARALFFLASPLSSYTTGSHIDVSGGF 261 (265)
T ss_pred CCcCCCCCHHHHHHHHHHHhCchhcccccceEEEcCce
Confidence 34456679999999999999887889999999999985
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=275.27 Aligned_cols=237 Identities=15% Similarity=0.174 Sum_probs=192.4
Q ss_pred ccCcEEEEecCCC--chhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASR--GIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~--giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++||+++||||++ |||+++|++|+++|++ |++++|+. +.+...+.+.....++.+++||++|+++++++++++.+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~--vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 80 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAE--LAFTYQND-KLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGK 80 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCE--EEEEecch-hHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHh
Confidence 6799999999986 9999999999999988 88888873 32222222222223567899999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++|++|++|||||+...... ...+..+.+.++|+..+++|+.+++.+.+.+.|.+.++ | .|+++||..+.
T Consensus 81 ~~g~iD~linnAg~~~~~~~--~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--g------~Iv~iss~~~~ 150 (262)
T PRK07984 81 VWPKFDGFVHSIGFAPGDQL--DGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPG--S------ALLTLSYLGAE 150 (262)
T ss_pred hcCCCCEEEECCccCCcccc--CCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCC--c------EEEEEecCCCC
Confidence 99999999999998631100 01124567788999999999999999999998866432 3 89999998876
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKEFS 253 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~~ 253 (282)
.+ .+++..|++||+++.+|+++++.|++++ +|+||+|+||+++|++..... ...+..+...|+++
T Consensus 151 ~~---~~~~~~Y~asKaal~~l~~~la~el~~~--gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedv 225 (262)
T PRK07984 151 RA---IPNYNVMGLAKASLEANVRYMANAMGPE--GVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDV 225 (262)
T ss_pred CC---CCCcchhHHHHHHHHHHHHHHHHHhccc--CcEEeeeecCcccchHHhcCCchHHHHHHHHHcCCCcCCCCHHHH
Confidence 55 6778899999999999999999999998 899999999999998643211 12344567799999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+..+++++++....++|+.+.+||++.
T Consensus 226 a~~~~~L~s~~~~~itG~~i~vdgg~~ 252 (262)
T PRK07984 226 GNSAAFLCSDLSAGISGEVVHVDGGFS 252 (262)
T ss_pred HHHHHHHcCcccccccCcEEEECCCcc
Confidence 999999999888899999999999853
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=279.58 Aligned_cols=240 Identities=21% Similarity=0.257 Sum_probs=199.7
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC---------CcccccccccccCCCceeEEEeeCCChhHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP---------NGATGLLDLKNRFPERLDVLQLDLTVESTIEA 96 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~---------~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~ 96 (282)
++||++|||||++|||+++|++|+++|++ |++++|+. +..+...+.+...+.++.++++|++|++++++
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~--vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGAR--VVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAAN 81 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHH
Confidence 67999999999999999999999999998 88888775 44444444444446688999999999999999
Q ss_pred HHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEE
Q 023441 97 SAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVAN 176 (282)
Q Consensus 97 ~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~ 176 (282)
+++++.+++|++|++|||||+.. ..++.+.+.++|++.+++|+.+++.+++.+.|.|.++........++||+
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~ 154 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGILR-------DRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIIN 154 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEE
Confidence 99999999999999999999874 44567788899999999999999999999999987542110111248999
Q ss_pred eeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----CCCCC--CCCCh
Q 023441 177 LSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----NVPEG--KLFTK 250 (282)
Q Consensus 177 ~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----~~~~~--~~~~~ 250 (282)
+||..+..+ .++...|+++|+++.+|+++++.|++++ +|+||+|+|| +.|++.+.... ..+.. ...+|
T Consensus 155 isS~~~~~~---~~~~~~Y~asKaal~~l~~~la~el~~~--gIrVn~v~Pg-~~T~~~~~~~~~~~~~~~~~~~~~~~p 228 (286)
T PRK07791 155 TSSGAGLQG---SVGQGNYSAAKAGIAALTLVAAAELGRY--GVTVNAIAPA-ARTRMTETVFAEMMAKPEEGEFDAMAP 228 (286)
T ss_pred eCchhhCcC---CCCchhhHHHHHHHHHHHHHHHHHHHHh--CeEEEEECCC-CCCCcchhhHHHHHhcCcccccCCCCH
Confidence 999988776 6678899999999999999999999988 8999999999 78988653211 11221 35689
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++++.+++++++....++|+.+.+||+.+
T Consensus 229 edva~~~~~L~s~~~~~itG~~i~vdgG~~ 258 (286)
T PRK07791 229 ENVSPLVVWLGSAESRDVTGKVFEVEGGKI 258 (286)
T ss_pred HHHHHHHHHHhCchhcCCCCcEEEEcCCce
Confidence 999999999999888899999999999864
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=274.25 Aligned_cols=237 Identities=17% Similarity=0.187 Sum_probs=190.2
Q ss_pred ccCcEEEEecC--CCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGA--SRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGa--s~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++||+++|||| ++|||+++|++|+++|++ |++.+|.....+.+.++..+.+. ..++++|++|+++++++++.+.+
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~--v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~d~~~v~~~~~~~~~ 80 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAE--LAFTYVGDRFKDRITEFAAEFGS-DLVFPCDVASDEQIDALFASLGQ 80 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCe--EEEEccchHHHHHHHHHHHhcCC-cceeeccCCCHHHHHHHHHHHHH
Confidence 67999999996 679999999999999998 88776542212222222222232 35789999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|++|||||....... ......+.+.++|++.+++|+.+++.+++.+.|.|.++ | +||++||..+.
T Consensus 81 ~~g~iD~lvnnAG~~~~~~~--~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~--g------~Ii~iss~~~~ 150 (260)
T PRK06997 81 HWDGLDGLVHSIGFAPREAI--AGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDD--A------SLLTLSYLGAE 150 (260)
T ss_pred HhCCCcEEEEccccCCcccc--ccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--c------eEEEEeccccc
Confidence 99999999999998631000 00123456788999999999999999999999999532 3 89999998876
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKEFS 253 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~~ 253 (282)
.+ .+.+..|++||+++.+|+++++.|++++ +|+||+|+||+++|++.+... ...|..+..+|+++
T Consensus 151 ~~---~~~~~~Y~asKaal~~l~~~la~el~~~--gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedv 225 (260)
T PRK06997 151 RV---VPNYNTMGLAKASLEASVRYLAVSLGPK--GIRANGISAGPIKTLAASGIKDFGKILDFVESNAPLRRNVTIEEV 225 (260)
T ss_pred cC---CCCcchHHHHHHHHHHHHHHHHHHhccc--CeEEEEEeeCccccchhccccchhhHHHHHHhcCcccccCCHHHH
Confidence 55 5677889999999999999999999988 899999999999998754221 12344566799999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++.+.+++++....++|+.+.+||++.
T Consensus 226 a~~~~~l~s~~~~~itG~~i~vdgg~~ 252 (260)
T PRK06997 226 GNVAAFLLSDLASGVTGEITHVDSGFN 252 (260)
T ss_pred HHHHHHHhCccccCcceeEEEEcCChh
Confidence 999999999888999999999999864
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=273.17 Aligned_cols=240 Identities=25% Similarity=0.305 Sum_probs=202.2
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC---CCceeEEEeeCCChhHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF---PERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~---~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
.+.+.||++||||+++|||+++|++|++.|++ |++++|+++..+.....+... +.++..+.||++++++++++++
T Consensus 3 ~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~--v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~ 80 (270)
T KOG0725|consen 3 GGRLAGKVALVTGGSSGIGKAIALLLAKAGAK--VVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVE 80 (270)
T ss_pred CccCCCcEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHH
Confidence 46789999999999999999999999999998 999999999877644332222 3479999999999999999999
Q ss_pred HHHHH-cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcH-HHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 100 SIKEK-YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVG-PILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 100 ~~~~~-~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~-~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
...++ +|+||+||||||... ...+..+.+.+.|++.+++|+.| .+.+.+.+.+.+++++.| .|+++
T Consensus 81 ~~~~~~~GkidiLvnnag~~~------~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg------~I~~~ 148 (270)
T KOG0725|consen 81 FAVEKFFGKIDILVNNAGALG------LTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGG------SIVNI 148 (270)
T ss_pred HHHHHhCCCCCEEEEcCCcCC------CCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCc------eEEEE
Confidence 99999 699999999999986 23378899999999999999995 666667777777766665 99999
Q ss_pred eccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc---------------cccCC
Q 023441 178 SARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP---------------FQRNV 242 (282)
Q Consensus 178 ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~---------------~~~~~ 242 (282)
||..+..+..+.+ ..|+++|+++++|+|+++.|++++ +||||+|+||.+.|++... .....
T Consensus 149 ss~~~~~~~~~~~--~~Y~~sK~al~~ltr~lA~El~~~--gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (270)
T KOG0725|consen 149 SSVAGVGPGPGSG--VAYGVSKAALLQLTRSLAKELAKH--GIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAV 224 (270)
T ss_pred eccccccCCCCCc--ccchhHHHHHHHHHHHHHHHHhhc--CcEEEEeecCcEeCCccccccccchhhHHhhhhcccccc
Confidence 9998876532221 799999999999999999999999 9999999999999997210 11233
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 243 PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|..+...|+++++.+.++.++...+++|+.+.+||+..
T Consensus 225 p~gr~g~~~eva~~~~fla~~~asyitG~~i~vdgG~~ 262 (270)
T KOG0725|consen 225 PLGRVGTPEEVAEAAAFLASDDASYITGQTIIVDGGFT 262 (270)
T ss_pred ccCCccCHHHHHHhHHhhcCcccccccCCEEEEeCCEE
Confidence 56788899999999999999886799999999999853
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=271.47 Aligned_cols=239 Identities=19% Similarity=0.291 Sum_probs=207.0
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..++++||++|||||++|||++++++|+++|++ |++.+|+.++.+...+.+...+.++.++++|++|+++++++++++
T Consensus 3 ~~~~l~~k~~lItGas~giG~~ia~~L~~~G~~--vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 3 DLFSLAGKNILITGSAQGIGFLLATGLAEYGAE--IIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred ccccCCCCEEEEECCCChHHHHHHHHHHHcCCE--EEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHH
Confidence 357789999999999999999999999999987 999999987766655555444567889999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++++++|++|||+|... ..+..+.+.++|++.+++|+.+++.+++.+.+.+.+++.+ +||++||..
T Consensus 81 ~~~~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~isS~~ 147 (254)
T PRK08085 81 EKDIGPIDVLINNAGIQR-------RHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAG------KIINICSMQ 147 (254)
T ss_pred HHhcCCCCEEEECCCcCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc------EEEEEccch
Confidence 999999999999999864 4456677889999999999999999999999999766554 899999988
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKE 251 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~ 251 (282)
+..+ .+....|+++|++++.++++++.|++++ +|++|+|+||+++|++..... ...|.....+|+
T Consensus 148 ~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 222 (254)
T PRK08085 148 SELG---RDTITPYAASKGAVKMLTRGMCVELARH--NIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQ 222 (254)
T ss_pred hccC---CCCCcchHHHHHHHHHHHHHHHHHHHhh--CeEEEEEEeCCCCCcchhhhccCHHHHHHHHhcCCCCCCcCHH
Confidence 7665 5667899999999999999999999988 899999999999999865321 123456677899
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++++.+.+++++....++|+.+.+||+..
T Consensus 223 ~va~~~~~l~~~~~~~i~G~~i~~dgg~~ 251 (254)
T PRK08085 223 ELIGAAVFLSSKASDFVNGHLLFVDGGML 251 (254)
T ss_pred HHHHHHHHHhCccccCCcCCEEEECCCee
Confidence 99999999999888999999999999863
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=271.14 Aligned_cols=237 Identities=18% Similarity=0.251 Sum_probs=200.7
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++++||+++||||++|||++++++|+++|++ |++.+++.. +...+.+...+.++.++++|++|.++++++++++.
T Consensus 5 ~~~l~~k~~lItG~~~gIG~a~a~~l~~~G~~--vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 80 (253)
T PRK08993 5 AFSLEGKVAVVTGCDTGLGQGMALGLAEAGCD--IVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAV 80 (253)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 45788999999999999999999999999998 887777543 22222233335678999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|++|||||... ..+..+.+.++|++.+++|+.+++.+++.+.|.|.+++.+ ++||++||..+
T Consensus 81 ~~~~~~D~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-----g~iv~isS~~~ 148 (253)
T PRK08993 81 AEFGHIDILVNNAGLIR-------REDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNG-----GKIINIASMLS 148 (253)
T ss_pred HHhCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCC-----eEEEEECchhh
Confidence 99999999999999864 4456677889999999999999999999999998776432 38999999987
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~ 252 (282)
..+ .+....|+++|+++++++++++.|+.++ +|+|++|+||+++|++...+. ...|..++..|++
T Consensus 149 ~~~---~~~~~~Y~~sKaa~~~~~~~la~e~~~~--gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~e 223 (253)
T PRK08993 149 FQG---GIRVPSYTASKSGVMGVTRLMANEWAKH--NINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSD 223 (253)
T ss_pred ccC---CCCCcchHHHHHHHHHHHHHHHHHhhhh--CeEEEEEeeCcccCcchhhhccchHHHHHHHhcCCCCCCcCHHH
Confidence 765 5667899999999999999999999988 899999999999999865332 1234566789999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++.+.+++++....++|+.+.+||++.
T Consensus 224 va~~~~~l~s~~~~~~~G~~~~~dgg~~ 251 (253)
T PRK08993 224 LMGPVVFLASSASDYINGYTIAVDGGWL 251 (253)
T ss_pred HHHHHHHHhCccccCccCcEEEECCCEe
Confidence 9999999999888999999999999863
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=270.01 Aligned_cols=237 Identities=20% Similarity=0.306 Sum_probs=205.0
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..++++||++|||||++|||.+++++|+++|++ |++.+|+ .+.+++.+.+...+.++.++++|+++.++++++++++
T Consensus 9 ~~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~--v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~ 85 (258)
T PRK06935 9 DFFSLDGKVAIVTGGNTGLGQGYAVALAKAGAD--IIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEA 85 (258)
T ss_pred ccccCCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 446688999999999999999999999999998 8888988 4444455555555668999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+.++++|++|||+|... ..+..+.+.++|++.+++|+.+++.+++.+.|.|.+++.| +|+++||..
T Consensus 86 ~~~~g~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g------~iv~isS~~ 152 (258)
T PRK06935 86 LEEFGKIDILVNNAGTIR-------RAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSG------KIINIASML 152 (258)
T ss_pred HHHcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCe------EEEEECCHH
Confidence 999999999999999864 4456677788999999999999999999999999877654 899999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKE 251 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~ 251 (282)
+..+ .+....|+++|++++++++++++|+.+. +|+||+|+||+++|++.+... ...+..++.+|+
T Consensus 153 ~~~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (258)
T PRK06935 153 SFQG---GKFVPAYTASKHGVAGLTKAFANELAAY--NIQVNAIAPGYIKTANTAPIRADKNRNDEILKRIPAGRWGEPD 227 (258)
T ss_pred hccC---CCCchhhHHHHHHHHHHHHHHHHHhhhh--CeEEEEEEeccccccchhhcccChHHHHHHHhcCCCCCCCCHH
Confidence 7766 5667899999999999999999999988 899999999999999754321 123456778999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++++.+.+++++....++|+.+.+||+.
T Consensus 228 dva~~~~~l~s~~~~~~~G~~i~~dgg~ 255 (258)
T PRK06935 228 DLMGAAVFLASRASDYVNGHILAVDGGW 255 (258)
T ss_pred HHHHHHHHHcChhhcCCCCCEEEECCCe
Confidence 9999999999988899999999999985
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=271.45 Aligned_cols=242 Identities=18% Similarity=0.236 Sum_probs=200.1
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec-CCCccccccccc-ccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-NPNGATGLLDLK-NRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r-~~~~~~~~~~~~-~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.+++||+++||||++|||+++|++|+++|++ |++++| +.+..+...+.+ ...+.++.++++|++|+++++++++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVN--IAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKI 81 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999998 777765 444444433322 233568999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++++++|++|||||...... .....+..+.+.+.+...+++|+.+.+.+++.+.|.|.+++.| +||++||..
T Consensus 82 ~~~~g~id~lv~nAg~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g------~iv~isS~~ 154 (260)
T PRK08416 82 DEDFDRVDFFISNAIISGRAV-VGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGG------SIISLSSTG 154 (260)
T ss_pred HHhcCCccEEEECcccccccc-ccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCE------EEEEEeccc
Confidence 999999999999998753110 0012345667788999999999999999999999999876544 999999988
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------CCCCCCCCChH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------NVPEGKLFTKE 251 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------~~~~~~~~~~~ 251 (282)
+..+ .+.+..|+++|++++.|+++++.|++++ +|+|++|+||+++|++.+.+.. ..+..+..+|+
T Consensus 155 ~~~~---~~~~~~Y~asK~a~~~~~~~la~el~~~--gi~v~~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~r~~~p~ 229 (260)
T PRK08416 155 NLVY---IENYAGHGTSKAAVETMVKYAATELGEK--NIRVNAVSGGPIDTDALKAFTNYEEVKAKTEELSPLNRMGQPE 229 (260)
T ss_pred cccC---CCCcccchhhHHHHHHHHHHHHHHhhhh--CeEEEEEeeCcccChhhhhccCCHHHHHHHHhcCCCCCCCCHH
Confidence 7655 5677899999999999999999999988 8999999999999998553321 23445677999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++++.+++++++....++|+.+.+||++
T Consensus 230 ~va~~~~~l~~~~~~~~~G~~i~vdgg~ 257 (260)
T PRK08416 230 DLAGACLFLCSEKASWLTGQTIVVDGGT 257 (260)
T ss_pred HHHHHHHHHcChhhhcccCcEEEEcCCe
Confidence 9999999999888889999999999985
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=272.00 Aligned_cols=247 Identities=21% Similarity=0.290 Sum_probs=208.4
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..+++++|+++||||++|||++++++|+++|++ |++++|+.+..+.+.+.+...+.++.++++|++|++++.++++++
T Consensus 4 ~~~~~~~k~vlVtGas~giG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (278)
T PRK08277 4 NLFSLKGKVAVITGGGGVLGGAMAKELARAGAK--VAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQI 81 (278)
T ss_pred ceeccCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 456789999999999999999999999999987 999999887766655555555668899999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCC--------CCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeE
Q 023441 102 KEKYGSLNLLINASGILSIPNV--------LQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAV 173 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~ 173 (282)
.++++++|++|||+|....... ..+..++.+.+.++|++.+++|+.+++.+++.+.|.|.+++.| +
T Consensus 82 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g------~ 155 (278)
T PRK08277 82 LEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGG------N 155 (278)
T ss_pred HHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc------E
Confidence 9999999999999997532110 1112346677889999999999999999999999999876554 8
Q ss_pred EEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------------
Q 023441 174 VANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-------------- 239 (282)
Q Consensus 174 iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-------------- 239 (282)
||++||..+..+ .+....|+++|++++.++++++.|+++. +|++|+|+||+++|++.+.+.
T Consensus 156 ii~isS~~~~~~---~~~~~~Y~~sK~a~~~l~~~la~e~~~~--girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~ 230 (278)
T PRK08277 156 IINISSMNAFTP---LTKVPAYSAAKAAISNFTQWLAVHFAKV--GIRVNAIAPGFFLTEQNRALLFNEDGSLTERANKI 230 (278)
T ss_pred EEEEccchhcCC---CCCCchhHHHHHHHHHHHHHHHHHhCcc--CeEEEEEEeccCcCcchhhhhccccccchhHHHHH
Confidence 999999988766 5677899999999999999999999988 899999999999999754321
Q ss_pred -cCCCCCCCCChHHHHHHHHHHHhh-cCCCCCCceeecCCcccC
Q 023441 240 -RNVPEGKLFTKEFSVQKLLNIINN-IKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 240 -~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~g~~~~~d~~~~~ 281 (282)
...+..+..+|+++|+.+.+++++ ....++|+.+.+||++.-
T Consensus 231 ~~~~p~~r~~~~~dva~~~~~l~s~~~~~~~tG~~i~vdgG~~~ 274 (278)
T PRK08277 231 LAHTPMGRFGKPEELLGTLLWLADEKASSFVTGVVLPVDGGFSA 274 (278)
T ss_pred hccCCccCCCCHHHHHHHHHHHcCccccCCcCCCEEEECCCeec
Confidence 123445667999999999999998 788999999999999753
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=270.17 Aligned_cols=234 Identities=18% Similarity=0.270 Sum_probs=190.9
Q ss_pred cccCcEEEEecC--CCchhHHHHHHHHhcCCCcEEEEeecCC--CcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 25 KWKGGVSLVQGA--SRGIGLEFAKQLLEKNDKGCVIATCRNP--NGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 25 ~~~gk~vlItGa--s~giG~a~a~~la~~G~~~~vi~~~r~~--~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
+++||+++|||| ++|||+++|++|+++|++ |++.+|+. +..+++.+. .+.++.++++|++|++++++++++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~--v~l~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~i~~~~~~ 78 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAE--VVLTGFGRALRLTERIAKR---LPEPAPVLELDVTNEEHLASLADR 78 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCE--EEEecCccchhHHHHHHHh---cCCCCcEEeCCCCCHHHHHHHHHH
Confidence 478999999999 899999999999999988 89988864 222333222 234678999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.++++++|++|||||+..... ...++.+.+.++|++.+++|+.+++.+++.+.|.|.++ | +|+++|+.
T Consensus 79 ~~~~~g~iD~li~nAG~~~~~~---~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~--g------~Iv~is~~ 147 (256)
T PRK07889 79 VREHVDGLDGVVHSIGFAPQSA---LGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEG--G------SIVGLDFD 147 (256)
T ss_pred HHHHcCCCcEEEEccccccccc---cCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccC--c------eEEEEeec
Confidence 9999999999999999863100 01245566788999999999999999999999999743 2 78888764
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCC-CCCC
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEG-KLFT 249 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~-~~~~ 249 (282)
. ..+ .+.+..|++||+++.+|+++++.|++++ +|+||+|+||+++|++.+.+. ...+.. +..+
T Consensus 148 ~-~~~---~~~~~~Y~asKaal~~l~~~la~el~~~--gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 221 (256)
T PRK07889 148 A-TVA---WPAYDWMGVAKAALESTNRYLARDLGPR--GIRVNLVAAGPIRTLAAKAIPGFELLEEGWDERAPLGWDVKD 221 (256)
T ss_pred c-ccc---CCccchhHHHHHHHHHHHHHHHHHhhhc--CeEEEeeccCcccChhhhcccCcHHHHHHHHhcCccccccCC
Confidence 3 222 4667789999999999999999999988 899999999999999865332 122333 4679
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+++|+.+++++++....++|+.+.+||++.
T Consensus 222 p~evA~~v~~l~s~~~~~~tG~~i~vdgg~~ 252 (256)
T PRK07889 222 PTPVARAVVALLSDWFPATTGEIVHVDGGAH 252 (256)
T ss_pred HHHHHHHHHHHhCcccccccceEEEEcCcee
Confidence 9999999999999888899999999999865
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=266.82 Aligned_cols=238 Identities=23% Similarity=0.292 Sum_probs=205.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++++|+++||||++|||.+++++|+++|++ |++++|+.+..+.+.+.+.+.+.++.++++|+++.++++++++++.+
T Consensus 4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~--Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (252)
T PRK07035 4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAH--VIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRE 81 (252)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999999999987 99999988776665555555556788999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||+|... ...+..+.+.+++++.+++|+.+++.+++.+.|.+.+++.+ +++++||..+.
T Consensus 82 ~~~~id~li~~ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~~sS~~~~ 149 (252)
T PRK07035 82 RHGRLDILVNNAAANP------YFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGG------SIVNVASVNGV 149 (252)
T ss_pred HcCCCCEEEECCCcCC------CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCc------EEEEECchhhc
Confidence 9999999999999753 12445567788999999999999999999999999876554 99999998877
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------CCCCCCCCChHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------NVPEGKLFTKEFS 253 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------~~~~~~~~~~~~~ 253 (282)
.+ .++...|++||+++++++++++.|+.++ +|++++|+||+++|++.+.... ..+..+..+|+++
T Consensus 150 ~~---~~~~~~Y~~sK~al~~~~~~l~~e~~~~--gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 224 (252)
T PRK07035 150 SP---GDFQGIYSITKAAVISMTKAFAKECAPF--GIRVNALLPGLTDTKFASALFKNDAILKQALAHIPLRRHAEPSEM 224 (252)
T ss_pred CC---CCCCcchHHHHHHHHHHHHHHHHHHhhc--CEEEEEEeeccccCcccccccCCHHHHHHHHccCCCCCcCCHHHH
Confidence 65 5677899999999999999999999988 8999999999999998654321 2344567799999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+.+.+++++....++|+.+.+||+..
T Consensus 225 a~~~~~l~~~~~~~~~g~~~~~dgg~~ 251 (252)
T PRK07035 225 AGAVLYLASDASSYTTGECLNVDGGYL 251 (252)
T ss_pred HHHHHHHhCccccCccCCEEEeCCCcC
Confidence 999999999888899999999999864
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=267.91 Aligned_cols=231 Identities=21% Similarity=0.295 Sum_probs=197.5
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||+++||||++|||++++++|+++|++ |++++|+.+..++..+.. +.++.++++|++|+++++++++.+.+.
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGAR--VAIVDIDADNGAAVAASL---GERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999987 999999987655443333 457899999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|++|||+|... ... .+.+.+.|++.+++|+.+++.+++.+.|.|. ++.| +||++||..+..
T Consensus 78 ~g~id~lv~~ag~~~-------~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~g------~ii~isS~~~~~ 142 (261)
T PRK08265 78 FGRVDILVNLACTYL-------DDG-LASSRADWLAALDVNLVSAAMLAQAAHPHLA-RGGG------AIVNFTSISAKF 142 (261)
T ss_pred hCCCCEEEECCCCCC-------CCc-CcCCHHHHHHHHhHhhHHHHHHHHHHHHHHh-cCCc------EEEEECchhhcc
Confidence 999999999999864 112 2456788999999999999999999999987 4333 899999998876
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc------------CCCCCCCCChHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR------------NVPEGKLFTKEF 252 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~------------~~~~~~~~~~~~ 252 (282)
+ .++...|+++|+++..++++++.|++++ +|++|+|+||+++|++.+.... ..+..+..+|++
T Consensus 143 ~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~d 217 (261)
T PRK08265 143 A---QTGRWLYPASKAAIRQLTRSMAMDLAPD--GIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAPFHLLGRVGDPEE 217 (261)
T ss_pred C---CCCCchhHHHHHHHHHHHHHHHHHhccc--CEEEEEEccCCccChhhhhhcccchhHHHHhhcccCCCCCccCHHH
Confidence 6 5667899999999999999999999988 8999999999999998643221 123445678999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+.+.+++++....++|+.+.+||++.
T Consensus 218 va~~~~~l~s~~~~~~tG~~i~vdgg~~ 245 (261)
T PRK08265 218 VAQVVAFLCSDAASFVTGADYAVDGGYS 245 (261)
T ss_pred HHHHHHHHcCccccCccCcEEEECCCee
Confidence 9999999998888899999999999863
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=267.77 Aligned_cols=240 Identities=21% Similarity=0.348 Sum_probs=208.0
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
...++++||+++||||++|||++++++|+++|++ |++.+|+.++.+...+..+..+.++.++++|++|.+++++++++
T Consensus 3 ~~~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~--vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 3 ENLFSLKGKIALITGASYGIGFAIAKAYAKAGAT--IVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred ccccCCCCCEEEEeCCCchHHHHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 4567899999999999999999999999999988 88889988777665555555566899999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.+.++++|++|||+|... ..+..+.+.+++++.+++|+.+++.+.+.+.|.|.+++.+ +||++||.
T Consensus 81 ~~~~~~~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g------~iv~isS~ 147 (265)
T PRK07097 81 IEKEVGVIDILVNNAGIIK-------RIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHG------KIINICSM 147 (265)
T ss_pred HHHhCCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCc------EEEEEcCc
Confidence 9999999999999999875 4456677889999999999999999999999999876554 89999998
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------------CCCC
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------------NVPE 244 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------------~~~~ 244 (282)
.+..+ .+....|+++|++++.++++++.++.+. +|+|++|+||+++|++...... ..+.
T Consensus 148 ~~~~~---~~~~~~Y~~sKaal~~l~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (265)
T PRK07097 148 MSELG---RETVSAYAAAKGGLKMLTKNIASEYGEA--NIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKTPA 222 (265)
T ss_pred cccCC---CCCCccHHHHHHHHHHHHHHHHHHhhhc--CceEEEEEeccccccchhhhhhccccccchhHHHHHHhcCCc
Confidence 87765 5667899999999999999999999988 8999999999999997643221 2233
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 245 GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
..+.+|+++|..+.+++++....++|+.+.+||++.
T Consensus 223 ~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~~ 258 (265)
T PRK07097 223 ARWGDPEDLAGPAVFLASDASNFVNGHILYVDGGIL 258 (265)
T ss_pred cCCcCHHHHHHHHHHHhCcccCCCCCCEEEECCCce
Confidence 456789999999999999888899999999999864
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=265.79 Aligned_cols=224 Identities=23% Similarity=0.325 Sum_probs=194.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||++|||||++|||+++|++|+++|++ |++.+|+.... .++.+++||++|+++++++++++.+
T Consensus 2 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~--Vi~~~r~~~~~-----------~~~~~~~~D~~~~~~i~~~~~~~~~ 68 (258)
T PRK06398 2 LGLKDKVAIVTGGSQGIGKAVVNRLKEEGSN--VINFDIKEPSY-----------NDVDYFKVDVSNKEQVIKGIDYVIS 68 (258)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCe--EEEEeCCcccc-----------CceEEEEccCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999988 89999886542 2678999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|+||||||... ..+..+.+.++|++.+++|+.+++.+++.+.|.|.+++.| +||++||..+.
T Consensus 69 ~~~~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g------~iv~isS~~~~ 135 (258)
T PRK06398 69 KYGRIDILVNNAGIES-------YGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKG------VIINIASVQSF 135 (258)
T ss_pred HcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCe------EEEEeCcchhc
Confidence 9999999999999864 4566777889999999999999999999999999876554 99999998877
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-------------------cCCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-------------------RNVPE 244 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-------------------~~~~~ 244 (282)
.+ .++...|+++|+++++++++++.|+.+ +|+||+|+||+++|++..... ...+.
T Consensus 136 ~~---~~~~~~Y~~sKaal~~~~~~la~e~~~---~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (258)
T PRK06398 136 AV---TRNAAAYVTSKHAVLGLTRSIAVDYAP---TIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREWGEMHPM 209 (258)
T ss_pred cC---CCCCchhhhhHHHHHHHHHHHHHHhCC---CCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhhhhcCCc
Confidence 65 567789999999999999999999975 499999999999999754311 11234
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 245 GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
....+|+++|+.+++++++....++|+.+.+||+.
T Consensus 210 ~~~~~p~eva~~~~~l~s~~~~~~~G~~i~~dgg~ 244 (258)
T PRK06398 210 KRVGKPEEVAYVVAFLASDLASFITGECVTVDGGL 244 (258)
T ss_pred CCCcCHHHHHHHHHHHcCcccCCCCCcEEEECCcc
Confidence 45668999999999999988889999999999986
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=266.01 Aligned_cols=235 Identities=19% Similarity=0.256 Sum_probs=199.1
Q ss_pred cccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCC-----------CcccccccccccCCCceeEEEeeCCCh
Q 023441 25 KWKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNP-----------NGATGLLDLKNRFPERLDVLQLDLTVE 91 (282)
Q Consensus 25 ~~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~-----------~~~~~~~~~~~~~~~~v~~~~~Dls~~ 91 (282)
+++||++|||||+ +|||+++|++|+++|++ |++.+|.. ....+..+.+.+.+.++.++++|++|+
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~--vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~ 80 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGAD--IFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQN 80 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCe--EEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence 5789999999998 59999999999999998 77765432 111123333445567899999999999
Q ss_pred hHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccce
Q 023441 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDV 171 (282)
Q Consensus 92 ~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~ 171 (282)
++++++++++.+.++++|++|||+|... ..+..+.+.++|++.+++|+.+++.+.+.+.|.|.+++.|
T Consensus 81 ~~i~~~~~~~~~~~g~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g----- 148 (256)
T PRK12859 81 DAPKELLNKVTEQLGYPHILVNNAAYST-------NNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGG----- 148 (256)
T ss_pred HHHHHHHHHHHHHcCCCcEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCe-----
Confidence 9999999999999999999999999864 4567788899999999999999999999999999876554
Q ss_pred eEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-----cccCCCCCC
Q 023441 172 AVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-----FQRNVPEGK 246 (282)
Q Consensus 172 ~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~-----~~~~~~~~~ 246 (282)
+||++||..+..+ .+++..|+++|++++.|+++++.+++++ +|++++|+||+++|++... .....+...
T Consensus 149 -~iv~isS~~~~~~---~~~~~~Y~~sK~a~~~l~~~la~~~~~~--~i~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~ 222 (256)
T PRK12859 149 -RIINMTSGQFQGP---MVGELAYAATKGAIDALTSSLAAEVAHL--GITVNAINPGPTDTGWMTEEIKQGLLPMFPFGR 222 (256)
T ss_pred -EEEEEcccccCCC---CCCchHHHHHHHHHHHHHHHHHHHhhhh--CeEEEEEEEccccCCCCCHHHHHHHHhcCCCCC
Confidence 9999999987655 6678899999999999999999999988 8999999999999996442 122334556
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 247 LFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
..+|+++++.+.+++++....++|+.+.+||+.
T Consensus 223 ~~~~~d~a~~~~~l~s~~~~~~~G~~i~~dgg~ 255 (256)
T PRK12859 223 IGEPKDAARLIKFLASEEAEWITGQIIHSEGGF 255 (256)
T ss_pred CcCHHHHHHHHHHHhCccccCccCcEEEeCCCc
Confidence 679999999999999888889999999999985
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=265.20 Aligned_cols=238 Identities=25% Similarity=0.325 Sum_probs=206.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||+++||||++|||.+++++|+++|++ |++++|+.++.+...+.+...+.++.++++|++|.+++.++++++.+
T Consensus 3 ~~l~~k~ilItGas~~iG~~ia~~l~~~G~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 80 (253)
T PRK06172 3 MTFSGKVALVTGGAAGIGRATALAFAREGAK--VVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIA 80 (253)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999987 99999998776655555555567899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|++|||+|... +..+..+.+.+++++.+++|+.+++.+++.+.|.+.+++.+ +++++||..+.
T Consensus 81 ~~g~id~li~~ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~ii~~sS~~~~ 148 (253)
T PRK06172 81 AYGRLDYAFNNAGIEI------EQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGG------AIVNTASVAGL 148 (253)
T ss_pred HhCCCCEEEECCCCCC------CCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc------EEEEECchhhc
Confidence 9999999999999864 12345667889999999999999999999999999776544 89999998887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-----------CCCCCCCCChHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-----------NVPEGKLFTKEF 252 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-----------~~~~~~~~~~~~ 252 (282)
.+ .++...|+++|++++.|+++++.|+.+. +|+|++|+||+++|++.++... ..+..+..+|++
T Consensus 149 ~~---~~~~~~Y~~sKaa~~~~~~~la~e~~~~--~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 223 (253)
T PRK06172 149 GA---APKMSIYAASKHAVIGLTKSAAIEYAKK--GIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMHPVGRIGKVEE 223 (253)
T ss_pred cC---CCCCchhHHHHHHHHHHHHHHHHHhccc--CeEEEEEEeCCccChhhhhhcccChHHHHHHhccCCCCCccCHHH
Confidence 66 6677899999999999999999999887 8999999999999998765421 123345668999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++.+.+++.+....++|+.+.+||+..
T Consensus 224 ia~~~~~l~~~~~~~~~G~~i~~dgg~~ 251 (253)
T PRK06172 224 VASAVLYLCSDGASFTTGHALMVDGGAT 251 (253)
T ss_pred HHHHHHHHhCccccCcCCcEEEECCCcc
Confidence 9999999999888899999999999864
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=272.62 Aligned_cols=238 Identities=18% Similarity=0.194 Sum_probs=190.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC----------cccccccccccCCCceeEEEeeCCChhH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN----------GATGLLDLKNRFPERLDVLQLDLTVEST 93 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~----------~~~~~~~~~~~~~~~v~~~~~Dls~~~~ 93 (282)
.+++||+++||||++|||+++|++|+++|++ |++.+|+.. +.+.+.+.+...+.++.+++||++|+++
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~--Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~ 81 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVELGAAGAT--VYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQ 81 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 3478999999999999999999999999987 999999853 2233334444445678899999999999
Q ss_pred HHHHHHHHHHHcCCccEEEECc-ccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCcccee
Q 023441 94 IEASAKSIKEKYGSLNLLINAS-GILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVA 172 (282)
Q Consensus 94 ~~~~~~~~~~~~~~id~lv~~a-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~ 172 (282)
++++++++.+++|+||++|||+ |..... ....++.+.+.++|.+.+++|+.+++.+++++.|.|.+++.|
T Consensus 82 v~~~~~~~~~~~g~iDilVnnA~g~~~~~---~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g------ 152 (305)
T PRK08303 82 VRALVERIDREQGRLDILVNDIWGGEKLF---EWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGG------ 152 (305)
T ss_pred HHHHHHHHHHHcCCccEEEECCccccccc---ccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCc------
Confidence 9999999999999999999999 753100 012355667788899999999999999999999999876544
Q ss_pred EEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-----------cC
Q 023441 173 VVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-----------RN 241 (282)
Q Consensus 173 ~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-----------~~ 241 (282)
+||++||..+.....+.+....|+++|+++.+|+++|+.|+++. +|+||+|+||+++|++..... ..
T Consensus 153 ~IV~isS~~~~~~~~~~~~~~~Y~asKaal~~lt~~La~el~~~--gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~ 230 (305)
T PRK08303 153 LVVEITDGTAEYNATHYRLSVFYDLAKTSVNRLAFSLAHELAPH--GATAVALTPGWLRSEMMLDAFGVTEENWRDALAK 230 (305)
T ss_pred EEEEECCccccccCcCCCCcchhHHHHHHHHHHHHHHHHHhhhc--CcEEEEecCCccccHHHHHhhccCccchhhhhcc
Confidence 99999997654332223456789999999999999999999988 899999999999999743110 01
Q ss_pred CC-CCCCCChHHHHHHHHHHHhhcC-CCCCCceee
Q 023441 242 VP-EGKLFTKEFSVQKLLNIINNIK-SHDNGKFFA 274 (282)
Q Consensus 242 ~~-~~~~~~~~~~a~~~~~~~~~~~-~~~~g~~~~ 274 (282)
.+ .....+|+++|+.+.+++++.. ..++|+.+.
T Consensus 231 ~p~~~~~~~peevA~~v~fL~s~~~~~~itG~~l~ 265 (305)
T PRK08303 231 EPHFAISETPRYVGRAVAALAADPDVARWNGQSLS 265 (305)
T ss_pred ccccccCCCHHHHHHHHHHHHcCcchhhcCCcEEE
Confidence 22 1334579999999999998774 578999876
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=263.37 Aligned_cols=235 Identities=22% Similarity=0.294 Sum_probs=199.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||+++||||++|||.++|++|+++|++ |++++|+.. .+..+...+.+.++.++++|+++++++.++++++.+
T Consensus 1 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~--vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (248)
T TIGR01832 1 FSLEGKVALVTGANTGLGQGIAVGLAEAGAD--IVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVE 76 (248)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999999987 999998753 223333334456799999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeecccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARVG 182 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~~~ 182 (282)
.++++|++|||+|... ..+..+.+.+.|++.+++|+.+++.+++.+.+.|.+++ .| ++|++||..+
T Consensus 77 ~~~~~d~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g------~iv~~sS~~~ 143 (248)
T TIGR01832 77 EFGHIDILVNNAGIIR-------RADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGG------KIINIASMLS 143 (248)
T ss_pred HcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCe------EEEEEecHHh
Confidence 9999999999999874 34555677788999999999999999999999987654 33 8999999877
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~ 252 (282)
..+ .+....|+++|++++.++++++.|+.++ +|++++|+||+++|++.+... ...+..++.+|++
T Consensus 144 ~~~---~~~~~~Y~~sKaa~~~~~~~la~e~~~~--gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 218 (248)
T TIGR01832 144 FQG---GIRVPSYTASKHGVAGLTKLLANEWAAK--GINVNAIAPGYMATNNTQALRADEDRNAAILERIPAGRWGTPDD 218 (248)
T ss_pred ccC---CCCCchhHHHHHHHHHHHHHHHHHhCcc--CcEEEEEEECcCcCcchhccccChHHHHHHHhcCCCCCCcCHHH
Confidence 655 4566789999999999999999999988 899999999999999865322 1234456789999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+.+.+++++....++|+.+.+||++.
T Consensus 219 va~~~~~l~s~~~~~~~G~~i~~dgg~~ 246 (248)
T TIGR01832 219 IGGPAVFLASSASDYVNGYTLAVDGGWL 246 (248)
T ss_pred HHHHHHHHcCccccCcCCcEEEeCCCEe
Confidence 9999999999888899999999999863
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=270.19 Aligned_cols=235 Identities=16% Similarity=0.191 Sum_probs=198.6
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC--cccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN--GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~--~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
+++||++|||||++|||+++|++|+++|++ |++.+|+.. ..+++.+.....+.++.++++|++|.+++.++++++.
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~--Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 123 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGAD--VAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAH 123 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCE--EEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 478999999999999999999999999988 888776543 3333444444446678899999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+.++++|++|||+|... ...+..+.+.++|++.+++|+.+++.+++.+.|.|.+. + +||++||..+
T Consensus 124 ~~~g~id~lv~~Ag~~~------~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--g------~iv~iSS~~~ 189 (294)
T PRK07985 124 KALGGLDIMALVAGKQV------AIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKG--A------SIITTSSIQA 189 (294)
T ss_pred HHhCCCCEEEECCCCCc------CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcC--C------EEEEECCchh
Confidence 99999999999999753 13456677889999999999999999999999998643 2 8999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc----------cccCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP----------FQRNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~----------~~~~~~~~~~~~~~~ 252 (282)
..+ .+....|+++|++++.++++++.|++++ +|+||+|+||+++|++... +....+..+..+|++
T Consensus 190 ~~~---~~~~~~Y~asKaal~~l~~~la~el~~~--gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~r~~~ped 264 (294)
T PRK07985 190 YQP---SPHLLDYAATKAAILNYSRGLAKQVAEK--GIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAE 264 (294)
T ss_pred ccC---CCCcchhHHHHHHHHHHHHHHHHHHhHh--CcEEEEEECCcCccccccccCCCHHHHHHHhccCCCCCCCCHHH
Confidence 765 5667899999999999999999999988 8999999999999997421 111234456779999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|..+.+++++....++|+.+.+||+..
T Consensus 265 va~~~~fL~s~~~~~itG~~i~vdgG~~ 292 (294)
T PRK07985 265 LAPVYVYLASQESSYVTAEVHGVCGGEH 292 (294)
T ss_pred HHHHHHhhhChhcCCccccEEeeCCCee
Confidence 9999999999888999999999999864
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=265.05 Aligned_cols=239 Identities=22% Similarity=0.340 Sum_probs=207.1
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
+.+++++||++|||||+++||++++++|+++|++ |++.+|++++.++..+.+...+.++.++++|++|++++++++++
T Consensus 3 ~~~~~~~~k~vlItGa~g~iG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 3 LNLFDLTGRRALVTGSSQGIGYALAEGLAQAGAE--VILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred ccccCCCCCEEEEECCcchHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHH
Confidence 4566789999999999999999999999999987 99999998776655555544456799999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.++++++|++|||+|... ..+..+.+.++|++.+++|+.+++++++.+.+.|.+++.| +||++||.
T Consensus 81 ~~~~~~~~d~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g------~iv~iss~ 147 (255)
T PRK07523 81 FEAEIGPIDILVNNAGMQF-------RTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAG------KIINIASV 147 (255)
T ss_pred HHHhcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCe------EEEEEccc
Confidence 9999999999999999874 4566677889999999999999999999999999876554 89999998
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCCh
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTK 250 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~ 250 (282)
.+..+ .++...|+++|++++.++++++.|++++ +|+|++|+||+++|++.+... ...+..++..|
T Consensus 148 ~~~~~---~~~~~~y~~sK~a~~~~~~~~a~e~~~~--gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (255)
T PRK07523 148 QSALA---RPGIAPYTATKGAVGNLTKGMATDWAKH--GLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRTPAGRWGKV 222 (255)
T ss_pred hhccC---CCCCccHHHHHHHHHHHHHHHHHHhhHh--CeEEEEEEECcccCchhhhhccCHHHHHHHHhcCCCCCCcCH
Confidence 77655 5677899999999999999999999988 899999999999999855321 12344567789
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+++|+.+++++++....++|+.+.+||+.
T Consensus 223 ~dva~~~~~l~~~~~~~~~G~~i~~~gg~ 251 (255)
T PRK07523 223 EELVGACVFLASDASSFVNGHVLYVDGGI 251 (255)
T ss_pred HHHHHHHHHHcCchhcCccCcEEEECCCe
Confidence 99999999999887889999999999985
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=263.95 Aligned_cols=233 Identities=22% Similarity=0.271 Sum_probs=193.5
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEee-cCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~-r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++||+++||||++|||++++++|+++|++ |++.. |+.+..+.....+...+.++..+++|+++.+++.++++++.+.
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGAL--VAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNE 79 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCe--EEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999988 77764 5555544444444444567889999999999999999888763
Q ss_pred ----cC--CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 105 ----YG--SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 105 ----~~--~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
++ ++|+||||||... ..+..+.+.+.|++++++|+.+++.+++.+.|.|.++ | +||++|
T Consensus 80 ~~~~~g~~~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~--g------~iv~is 144 (252)
T PRK12747 80 LQNRTGSTKFDILINNAGIGP-------GAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN--S------RIINIS 144 (252)
T ss_pred hhhhcCCCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcC--C------eEEEEC
Confidence 34 8999999999753 4456677788999999999999999999999998653 2 899999
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------CCCCCCCC
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------NVPEGKLF 248 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------~~~~~~~~ 248 (282)
|..+..+ .++...|++||+++++++++++.|++++ +|++|+|+||+++|++...... ..+..+..
T Consensus 145 S~~~~~~---~~~~~~Y~~sKaa~~~~~~~la~e~~~~--girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (252)
T PRK12747 145 SAATRIS---LPDFIAYSMTKGAINTMTFTLAKQLGAR--GITVNAILPGFIKTDMNAELLSDPMMKQYATTISAFNRLG 219 (252)
T ss_pred CcccccC---CCCchhHHHHHHHHHHHHHHHHHHHhHc--CCEEEEEecCCccCchhhhcccCHHHHHHHHhcCcccCCC
Confidence 9988766 5667899999999999999999999988 8999999999999998643211 11335567
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+++++.+.+++++....++|+.+.+||++.
T Consensus 220 ~~~dva~~~~~l~s~~~~~~~G~~i~vdgg~~ 251 (252)
T PRK12747 220 EVEDIADTAAFLASPDSRWVTGQLIDVSGGSC 251 (252)
T ss_pred CHHHHHHHHHHHcCccccCcCCcEEEecCCcc
Confidence 99999999999998878899999999999863
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=254.25 Aligned_cols=231 Identities=24% Similarity=0.331 Sum_probs=195.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCC-ceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE-RLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~-~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|++.||++++||+.+|||++++++|+++|.. +.++..+.+..+...++....+. ++.|++||+++..+++++++++.
T Consensus 1 m~~tGKna~vtggagGIGl~~sk~Ll~kgik--~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~ 78 (261)
T KOG4169|consen 1 MDLTGKNALVTGGAGGIGLATSKALLEKGIK--VLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKIL 78 (261)
T ss_pred CcccCceEEEecCCchhhHHHHHHHHHcCch--heeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHH
Confidence 6889999999999999999999999999998 67766667766666666554444 89999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
..||.||++||+||+.. ..+|++++++|+.|..+.+...+|+|.++..| .++.|||+||++|
T Consensus 79 ~~fg~iDIlINgAGi~~---------------dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG---~GGiIvNmsSv~G 140 (261)
T KOG4169|consen 79 ATFGTIDILINGAGILD---------------DKDWERTINVNLTGVINGTQLALPYMDKKQGG---KGGIIVNMSSVAG 140 (261)
T ss_pred HHhCceEEEEccccccc---------------chhHHHhhccchhhhhhhhhhhhhhhhhhcCC---CCcEEEEeccccc
Confidence 99999999999999974 34699999999999999999999999887543 3469999999998
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---CCC----------CCCCCC
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR---NVP----------EGKLFT 249 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---~~~----------~~~~~~ 249 (282)
+.+ .+..+.|++||+++.+|+|+++...--.+.||+++++|||++.|.+.+.+.. ... .....+
T Consensus 141 L~P---~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~~~~~~~~~e~~~~~~~~l~~~~~q~ 217 (261)
T KOG4169|consen 141 LDP---MPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAENIDASGGYLEYSDSIKEALERAPKQS 217 (261)
T ss_pred cCc---cccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHHHHhcCCcccccHHHHHHHHHcccCC
Confidence 866 8889999999999999999999874444449999999999999998776522 111 134568
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|..+++.++..++. ..+|..|.+|.+.+
T Consensus 218 ~~~~a~~~v~aiE~---~~NGaiw~v~~g~l 245 (261)
T KOG4169|consen 218 PACCAINIVNAIEY---PKNGAIWKVDSGSL 245 (261)
T ss_pred HHHHHHHHHHHHhh---ccCCcEEEEecCcE
Confidence 99999999999986 67999999887653
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=262.97 Aligned_cols=239 Identities=21% Similarity=0.301 Sum_probs=203.7
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.++.+++|+++||||++|||++++++|+++|++ |++.+|+.+..+...+.+...+.++.++.+|++|.++++++++.+
T Consensus 5 ~~~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~--vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~ 82 (255)
T PRK06113 5 DNLRLDGKCAIITGAGAGIGKEIAITFATAGAS--VVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFA 82 (255)
T ss_pred cccCcCCCEEEEECCCchHHHHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 456788999999999999999999999999988 888999887766554444444568899999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+.++++|++|||+|... ..+. +.+.+++++.+++|+.+++++++.+.|.|.+.+.+ ++|++||..
T Consensus 83 ~~~~~~~d~li~~ag~~~-------~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~isS~~ 148 (255)
T PRK06113 83 LSKLGKVDILVNNAGGGG-------PKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGG------VILTITSMA 148 (255)
T ss_pred HHHcCCCCEEEECCCCCC-------CCCC-CCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc------EEEEEeccc
Confidence 999999999999999864 2222 46778899999999999999999999999765543 899999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCChHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFTKEF 252 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~~~~ 252 (282)
+..+ .++...|+++|+++++|+++++.++.+. +|++|+++||+++|++.... .+..+.....+|++
T Consensus 149 ~~~~---~~~~~~Y~~sK~a~~~~~~~la~~~~~~--~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 223 (255)
T PRK06113 149 AENK---NINMTSYASSKAAASHLVRNMAFDLGEK--NIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQD 223 (255)
T ss_pred ccCC---CCCcchhHHHHHHHHHHHHHHHHHhhhh--CeEEEEEecccccccccccccCHHHHHHHHhcCCCCCCcCHHH
Confidence 8766 5667789999999999999999999887 89999999999999976532 12233455679999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
+++.+++++++....++|+.+.+||+++.
T Consensus 224 ~a~~~~~l~~~~~~~~~G~~i~~~gg~~~ 252 (255)
T PRK06113 224 IANAALFLCSPAASWVSGQILTVSGGGVQ 252 (255)
T ss_pred HHHHHHHHcCccccCccCCEEEECCCccc
Confidence 99999999988788999999999998753
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=264.34 Aligned_cols=232 Identities=21% Similarity=0.221 Sum_probs=195.7
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
+++||||++|||+++|++|+++|++ |++.+|+++..++..+.+.+. .++.++++|++|.++++++++++.++++++|
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGAR--VVISSRNEENLEKALKELKEY-GEVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHHHhc-CCceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 7999999999999999999999987 999999987766655544433 3688999999999999999999999999999
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhc-CCCCCccceeEEEEeeccccccCCCC
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKV-GGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~-~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
+||||+|.... ...+..+.+.++|.+.+++|+.+++.+.+.++|.+.+ ++.| +||++||..+..+
T Consensus 79 ~li~naG~~~~-----~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g------~iv~isS~~~~~~--- 144 (259)
T PRK08340 79 ALVWNAGNVRC-----EPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKG------VLVYLSSVSVKEP--- 144 (259)
T ss_pred EEEECCCCCCC-----CccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCC------EEEEEeCcccCCC---
Confidence 99999997531 1233556677889999999999999999999998764 3443 8999999987655
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--------------------cccCCCCCCCC
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--------------------FQRNVPEGKLF 248 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--------------------~~~~~~~~~~~ 248 (282)
.+....|+++|+++.+|+++++.|+++. +|+||+|+||+++|++... .....|..+..
T Consensus 145 ~~~~~~y~~sKaa~~~~~~~la~e~~~~--gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~ 222 (259)
T PRK08340 145 MPPLVLADVTRAGLVQLAKGVSRTYGGK--GIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERTPLKRTG 222 (259)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhCCC--CEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccCCccCCC
Confidence 5667899999999999999999999988 8999999999999997531 01123445677
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+|+|+.+.+++++..+.++|+.+.+||++.
T Consensus 223 ~p~dva~~~~fL~s~~~~~itG~~i~vdgg~~ 254 (259)
T PRK08340 223 RWEELGSLIAFLLSENAEYMLGSTIVFDGAMT 254 (259)
T ss_pred CHHHHHHHHHHHcCcccccccCceEeecCCcC
Confidence 99999999999999988999999999999864
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=263.10 Aligned_cols=235 Identities=22% Similarity=0.319 Sum_probs=201.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+||+++||||++|||++++++|+++|++ |++++|+.+..+.....+...+.++.++++|++++++++++++++.++++
T Consensus 1 ~~k~~lItGas~giG~~la~~l~~~G~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDGFK--VAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3799999999999999999999999987 99999988776655554444456889999999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++|||+|... ..+..+.+.+.+++.+++|+.+++.+++.+.+.+.+.+.+ ++|+++||..+..+
T Consensus 79 ~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-----~~iv~~sS~~~~~~- 145 (256)
T PRK08643 79 DLNVVVNNAGVAP-------TTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHG-----GKIINATSQAGVVG- 145 (256)
T ss_pred CCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-----CEEEEECccccccC-
Confidence 9999999999864 4556677889999999999999999999999998765422 38999999887766
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-------------------cCCCCCCC
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-------------------RNVPEGKL 247 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-------------------~~~~~~~~ 247 (282)
.++...|+++|++++.+++.++.|+.+. +|+|++|+||+++|++..... ...+..+.
T Consensus 146 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (256)
T PRK08643 146 --NPELAVYSSTKFAVRGLTQTAARDLASE--GITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKDITLGRL 221 (256)
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHhccc--CcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhccCCCCCC
Confidence 5567789999999999999999999888 899999999999999754311 12234456
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 248 FTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+|+++++.+.+++++....++|+.+.+||++.
T Consensus 222 ~~~~~va~~~~~L~~~~~~~~~G~~i~vdgg~~ 254 (256)
T PRK08643 222 SEPEDVANCVSFLAGPDSDYITGQTIIVDGGMV 254 (256)
T ss_pred cCHHHHHHHHHHHhCccccCccCcEEEeCCCee
Confidence 789999999999999888999999999999864
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=268.69 Aligned_cols=236 Identities=18% Similarity=0.201 Sum_probs=200.0
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc--ccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG--ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~--~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++||++|||||++|||++++++|+++|++ |++..++.+. .++..+.+...+.++.+++||++|.++++++++++.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~--V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGAD--IALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCE--EEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999999998 7777765432 233444555556688999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+.++++|+||||||... ...+..+.+.++|++.+++|+.+++++++.+.|.|.+. ++||++||..+
T Consensus 130 ~~~g~iD~lV~nAg~~~------~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--------~~iv~~sS~~~ 195 (300)
T PRK06128 130 KELGGLDILVNIAGKQT------AVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPG--------ASIINTGSIQS 195 (300)
T ss_pred HHhCCCCEEEECCcccC------CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcC--------CEEEEECCccc
Confidence 99999999999999753 23456677889999999999999999999999998643 28999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~~~~ 252 (282)
..+ .++...|+++|++++.|+++++.++.+. +|+||+|+||+++|++.... ....+..+...|++
T Consensus 196 ~~~---~~~~~~Y~asK~a~~~~~~~la~el~~~--gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~~p~~r~~~p~d 270 (300)
T PRK06128 196 YQP---SPTLLDYASTKAAIVAFTKALAKQVAEK--GIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSETPMKRPGQPVE 270 (300)
T ss_pred cCC---CCCchhHHHHHHHHHHHHHHHHHHhhhc--CcEEEEEEECcCcCCCcccCCCCHHHHHHHhcCCCCCCCcCHHH
Confidence 765 5667789999999999999999999988 89999999999999985421 12345566779999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
++..++++++.....++|+.+.+||+...
T Consensus 271 va~~~~~l~s~~~~~~~G~~~~v~gg~~~ 299 (300)
T PRK06128 271 MAPLYVLLASQESSYVTGEVFGVTGGLLL 299 (300)
T ss_pred HHHHHHHHhCccccCccCcEEeeCCCEeC
Confidence 99999999988778999999999998754
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=261.07 Aligned_cols=233 Identities=21% Similarity=0.354 Sum_probs=194.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||+++||||++|||+++|++|+++|++ |++.+++.+.... +. .. .++.++++|++|+++++++++++.+
T Consensus 3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~--v~~~~~~~~~~~~--~l-~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (255)
T PRK06463 3 MRFKGKVALITGGTRGIGRAIAEAFLREGAK--VAVLYNSAENEAK--EL-RE--KGVFTIKCDVGNRDQVKKSKEVVEK 75 (255)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEEeCCcHHHHH--HH-Hh--CCCeEEEecCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999987 7777665433211 11 11 1478999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||+|... ..+..+.+.+.|++.+++|+.+++.+++.+.|.|.+++.| +||++||..+.
T Consensus 76 ~~~~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g------~iv~isS~~~~ 142 (255)
T PRK06463 76 EFGRVDVLVNNAGIMY-------LMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNG------AIVNIASNAGI 142 (255)
T ss_pred HcCCCCEEEECCCcCC-------CCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCc------EEEEEcCHHhC
Confidence 9999999999999864 4456667788999999999999999999999999866554 99999998776
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-------------cCCCCCCCCCh
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-------------RNVPEGKLFTK 250 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-------------~~~~~~~~~~~ 250 (282)
.. +.++...|++||+++++|+++++.|+++. +|+|++|+||+++|++..... ...+.....+|
T Consensus 143 ~~--~~~~~~~Y~asKaa~~~~~~~la~e~~~~--~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (255)
T PRK06463 143 GT--AAEGTTFYAITKAGIIILTRRLAFELGKY--GIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKTVLKTTGKP 218 (255)
T ss_pred CC--CCCCccHhHHHHHHHHHHHHHHHHHhhhc--CeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCCCcCCCcCH
Confidence 32 13456789999999999999999999988 899999999999999864311 12234556789
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++++.+.++++.....++|+.+.+||+.+
T Consensus 219 ~~va~~~~~l~s~~~~~~~G~~~~~dgg~~ 248 (255)
T PRK06463 219 EDIANIVLFLASDDARYITGQVIVADGGRI 248 (255)
T ss_pred HHHHHHHHHHcChhhcCCCCCEEEECCCee
Confidence 999999999998888899999999999865
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=263.68 Aligned_cols=241 Identities=24% Similarity=0.315 Sum_probs=200.0
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
....+++||++|||||++|||++++++|+++|++ |++.+|+.+..++..+.+.. +.++.++++|++|.++++++++.
T Consensus 11 ~~~~~l~~k~~lItGas~gIG~~la~~l~~~G~~--v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~ 87 (280)
T PLN02253 11 LPSQRLLGKVALVTGGATGIGESIVRLFHKHGAK--VCIVDLQDDLGQNVCDSLGG-EPNVCFFHCDVTVEDDVSRAVDF 87 (280)
T ss_pred ccccccCCCEEEEECCCchHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHhcC-CCceEEEEeecCCHHHHHHHHHH
Confidence 3456788999999999999999999999999988 99999987655544433322 35789999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.++++++|+||||||.... ...+..+.+.+++++.+++|+.+++++++.+.+.|.+++.| ++++++|.
T Consensus 88 ~~~~~g~id~li~~Ag~~~~-----~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g------~ii~isS~ 156 (280)
T PLN02253 88 TVDKFGTLDIMVNNAGLTGP-----PCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKG------SIVSLCSV 156 (280)
T ss_pred HHHHhCCCCEEEECCCcCCC-----CCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCc------eEEEecCh
Confidence 99999999999999998631 12345677789999999999999999999999999776554 89999998
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc------------------CC
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR------------------NV 242 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~------------------~~ 242 (282)
.+..+ .++...|+++|++++.++++++.|+++. +|++++++||+++|++.....+ ..
T Consensus 157 ~~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (280)
T PLN02253 157 ASAIG---GLGPHAYTGSKHAVLGLTRSVAAELGKH--GIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNA 231 (280)
T ss_pred hhccc---CCCCcccHHHHHHHHHHHHHHHHHhhhc--CeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCC
Confidence 88766 4456789999999999999999999987 8999999999999986432110 01
Q ss_pred CC-CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 243 PE-GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 243 ~~-~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+. ....+|+++++.+.+++++...+++|+.+.+||++.
T Consensus 232 ~l~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~vdgG~~ 270 (280)
T PLN02253 232 NLKGVELTVDDVANAVLFLASDEARYISGLNLMIDGGFT 270 (280)
T ss_pred CCcCCCCCHHHHHHHHHhhcCcccccccCcEEEECCchh
Confidence 11 233689999999999998888899999999999874
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=254.39 Aligned_cols=235 Identities=42% Similarity=0.671 Sum_probs=193.4
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++++||||++|||++++++|+++|..+.|++..|+.... . .+.++++++||++|.++++++ .++++++
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~------~--~~~~~~~~~~Dls~~~~~~~~----~~~~~~i 68 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD------F--QHDNVQWHALDVTDEAEIKQL----SEQFTQL 68 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc------c--ccCceEEEEecCCCHHHHHHH----HHhcCCC
Confidence 479999999999999999999997554577767655321 1 134789999999999988874 3456899
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|++|||+|...... ..+..++.+.+.+.|+..+++|+.+++.+++.+.|.|++++.+ +++++||..+.....+
T Consensus 69 d~li~~aG~~~~~~-~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~------~i~~iss~~~~~~~~~ 141 (235)
T PRK09009 69 DWLINCVGMLHTQD-KGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESA------KFAVISAKVGSISDNR 141 (235)
T ss_pred CEEEECCccccccc-cCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCc------eEEEEeecccccccCC
Confidence 99999999874211 1123455677788899999999999999999999999876544 7999998776554334
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhcCCCC
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIKSHD 268 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 268 (282)
.+++..|+++|++++.|+++|+.|+.+...+++|++|+||+++|++.+.+....+.....+|+++|+.+++++.+..+..
T Consensus 142 ~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~ 221 (235)
T PRK09009 142 LGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKPFQQNVPKGKLFTPEYVAQCLLGIIANATPAQ 221 (235)
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcchhhccccCCCCCHHHHHHHHHHHHHcCChhh
Confidence 56678999999999999999999998755589999999999999998776656666677899999999999999888889
Q ss_pred CCceeecCCcccCC
Q 023441 269 NGKFFAWDGQEIPW 282 (282)
Q Consensus 269 ~g~~~~~d~~~~~~ 282 (282)
+|+++.+||+|+||
T Consensus 222 ~g~~~~~~g~~~~~ 235 (235)
T PRK09009 222 SGSFLAYDGETLPW 235 (235)
T ss_pred CCcEEeeCCcCCCC
Confidence 99999999999999
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=262.95 Aligned_cols=233 Identities=22% Similarity=0.258 Sum_probs=193.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+.++||+++||||++|||++++++|+++|++ |++++|+.+..+.+.+. .+.++.++++|++|+++++++++++.+
T Consensus 2 ~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (263)
T PRK06200 2 GWLHGQVALITGGGSGIGRALVERFLAEGAR--VAVLERSAEKLASLRQR---FGDHVLVVEGDVTSYADNQRAVDQTVD 76 (263)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHH---hCCcceEEEccCCCHHHHHHHHHHHHH
Confidence 3478999999999999999999999999988 99999988765544332 245788999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchh----hhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKS----SLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~----~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
.++++|++|||+|+... ..+..+.+.+ .|++.+++|+.+++.+++.+.|.|++++ | +||++||
T Consensus 77 ~~g~id~li~~ag~~~~------~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g------~iv~~sS 143 (263)
T PRK06200 77 AFGKLDCFVGNAGIWDY------NTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASG-G------SMIFTLS 143 (263)
T ss_pred hcCCCCEEEECCCCccc------CCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcC-C------EEEEECC
Confidence 99999999999998631 1223333333 4889999999999999999999987653 3 8999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------------cc
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------------QR 240 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------------~~ 240 (282)
..+..+ .++...|+++|++++.|+++++.|+++ +|+||+|+||+++|++.... ..
T Consensus 144 ~~~~~~---~~~~~~Y~~sK~a~~~~~~~la~el~~---~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (263)
T PRK06200 144 NSSFYP---GGGGPLYTASKHAVVGLVRQLAYELAP---KIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAA 217 (263)
T ss_pred hhhcCC---CCCCchhHHHHHHHHHHHHHHHHHHhc---CcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhc
Confidence 888765 456678999999999999999999986 49999999999999975311 11
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhc-CCCCCCceeecCCccc
Q 023441 241 NVPEGKLFTKEFSVQKLLNIINNI-KSHDNGKFFAWDGQEI 280 (282)
Q Consensus 241 ~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~g~~~~~d~~~~ 280 (282)
..|..+..+|+++++.+.+++++. ...++|+.+.+||++.
T Consensus 218 ~~p~~r~~~~~eva~~~~fl~s~~~~~~itG~~i~vdgG~~ 258 (263)
T PRK06200 218 ITPLQFAPQPEDHTGPYVLLASRRNSRALTGVVINADGGLG 258 (263)
T ss_pred CCCCCCCCCHHHHhhhhhheecccccCcccceEEEEcCcee
Confidence 124456779999999999999988 8899999999999853
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=261.91 Aligned_cols=232 Identities=22% Similarity=0.288 Sum_probs=196.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc-cCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN-RFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~-~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|+++||+++||||++|||++++++|+++|++ |++++|+.++.+...+.+. ..+.++.++.+|++|+++++++++.
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~-- 78 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCH--LHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAE-- 78 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHH--
Confidence 5678999999999999999999999999987 9999999877665544443 2355789999999999999888764
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++|++|||+|... ..+..+.+.++|+.++++|+.+++.+++.+.|.|.+++.| +||++||..+
T Consensus 79 --~g~id~lv~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g------~iv~iss~~~ 143 (259)
T PRK06125 79 --AGDIDILVNNAGAIP-------GGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSG------VIVNVIGAAG 143 (259)
T ss_pred --hCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc------EEEEecCccc
Confidence 578999999999864 4566678889999999999999999999999999877654 8999999877
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc------------------ccCCCC
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF------------------QRNVPE 244 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~------------------~~~~~~ 244 (282)
..+ .+.+..|+++|+++++++++++.|+.+. +|+||+|+||+++|++.... ....+.
T Consensus 144 ~~~---~~~~~~y~ask~al~~~~~~la~e~~~~--gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (259)
T PRK06125 144 ENP---DADYICGSAGNAALMAFTRALGGKSLDD--GVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAGLPL 218 (259)
T ss_pred cCC---CCCchHhHHHHHHHHHHHHHHHHHhCcc--CeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhccCCc
Confidence 655 5567789999999999999999999988 89999999999999964321 112344
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 245 GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
....+|+++++.+++++++....++|+.+.+||++
T Consensus 219 ~~~~~~~~va~~~~~l~~~~~~~~~G~~i~vdgg~ 253 (259)
T PRK06125 219 GRPATPEEVADLVAFLASPRSGYTSGTVVTVDGGI 253 (259)
T ss_pred CCCcCHHHHHHHHHHHcCchhccccCceEEecCCe
Confidence 56678999999999999887889999999999985
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=259.09 Aligned_cols=239 Identities=20% Similarity=0.253 Sum_probs=204.4
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC--CCceeEEEeeCCChhHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF--PERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~--~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
.++++||+++||||++|||++++++|+++|++ |++++|+.+..++..+.+... +.++.++.+|+++++++++++++
T Consensus 4 ~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~--v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (257)
T PRK09242 4 RWRLDGQTALITGASKGIGLAIAREFLGLGAD--VLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDW 81 (257)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 45688999999999999999999999999988 999999987766554443322 45789999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.+.++++|++|||+|... ..+..+.+.+++++.+.+|+.+++.+++++.|.|++++.+ +||++||.
T Consensus 82 ~~~~~g~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~ii~~sS~ 148 (257)
T PRK09242 82 VEDHWDGLHILVNNAGGNI-------RKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASS------AIVNIGSV 148 (257)
T ss_pred HHHHcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc------eEEEECcc
Confidence 9999999999999999864 4456677889999999999999999999999999876554 89999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------CCCCCCCCCh
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------NVPEGKLFTK 250 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------~~~~~~~~~~ 250 (282)
.+..+ .+....|+++|++++.++++++.|+.+. +|++++|+||+++|++...... ..+.....+|
T Consensus 149 ~~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (257)
T PRK09242 149 SGLTH---VRSGAPYGMTKAALLQMTRNLAVEWAED--GIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTPMRRVGEP 223 (257)
T ss_pred ccCCC---CCCCcchHHHHHHHHHHHHHHHHHHHHh--CeEEEEEEECCCCCcccccccCChHHHHHHHhcCCCCCCcCH
Confidence 88766 5667889999999999999999999887 8999999999999998654321 2234456689
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
++++.++.+++++....++|+.+..||+...
T Consensus 224 ~~va~~~~~l~~~~~~~~~g~~i~~~gg~~~ 254 (257)
T PRK09242 224 EEVAAAVAFLCMPAASYITGQCIAVDGGFLR 254 (257)
T ss_pred HHHHHHHHHHhCcccccccCCEEEECCCeEe
Confidence 9999999999987777889999999998653
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=262.07 Aligned_cols=238 Identities=18% Similarity=0.243 Sum_probs=197.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc-------cccccccccCCCceeEEEeeCCChhHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA-------TGLLDLKNRFPERLDVLQLDLTVESTIEA 96 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~-------~~~~~~~~~~~~~v~~~~~Dls~~~~~~~ 96 (282)
|+++||+++||||++|||.++|++|+++|++ |++++|+.+.. +...+.+...+.++.++++|+++++++.+
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 79 (273)
T PRK08278 2 MSLSGKTLFITGASRGIGLAIALRAARDGAN--IVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAA 79 (273)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHH
Confidence 5678999999999999999999999999987 99999987542 22223334446689999999999999999
Q ss_pred HHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEE
Q 023441 97 SAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVAN 176 (282)
Q Consensus 97 ~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~ 176 (282)
+++++.+.++++|++|||+|... ..+..+.+.+++++.+++|+.+++.+++.+.|.|.+++.| .|++
T Consensus 80 ~~~~~~~~~g~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g------~iv~ 146 (273)
T PRK08278 80 AVAKAVERFGGIDICVNNASAIN-------LTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENP------HILT 146 (273)
T ss_pred HHHHHHHHhCCCCEEEECCCCcC-------CCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCC------EEEE
Confidence 99999999999999999999864 4456677888999999999999999999999999877654 8999
Q ss_pred eeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecc-cccCCCCccccc-CCCCCCCCChHHHH
Q 023441 177 LSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPG-TVDTDLSRPFQR-NVPEGKLFTKEFSV 254 (282)
Q Consensus 177 ~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg-~v~t~~~~~~~~-~~~~~~~~~~~~~a 254 (282)
+||..+..+. ..+++..|++||++++.++++++.|+.++ +|+|++|+|| +++|++.+.... ..+.....+|++++
T Consensus 147 iss~~~~~~~-~~~~~~~Y~~sK~a~~~~~~~la~el~~~--~I~v~~i~Pg~~i~t~~~~~~~~~~~~~~~~~~p~~va 223 (273)
T PRK08278 147 LSPPLNLDPK-WFAPHTAYTMAKYGMSLCTLGLAEEFRDD--GIAVNALWPRTTIATAAVRNLLGGDEAMRRSRTPEIMA 223 (273)
T ss_pred ECCchhcccc-ccCCcchhHHHHHHHHHHHHHHHHHhhhc--CcEEEEEeCCCccccHHHHhcccccccccccCCHHHHH
Confidence 9998765441 12677899999999999999999999987 8999999999 688986554322 22334567999999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCccc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.+++++++.....+|+++. |++.+
T Consensus 224 ~~~~~l~~~~~~~~~G~~~~-~~~~~ 248 (273)
T PRK08278 224 DAAYEILSRPAREFTGNFLI-DEEVL 248 (273)
T ss_pred HHHHHHhcCccccceeEEEe-ccchh
Confidence 99999999888899999884 66543
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=258.40 Aligned_cols=234 Identities=20% Similarity=0.254 Sum_probs=196.9
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
||+++||||++|||++++++|+++|++ |++++|+.+..+.+.+.+...+.++.++++|++|+++++++++++.+.+++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~--Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGAN--VVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 689999999999999999999999987 999999987766655555444568999999999999999999999999999
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++|||+|... ..+..+.+.++|++.+++|+.+++++++++.+.|.+++.. ++|+++||..+..+
T Consensus 79 id~lI~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-----g~ii~isS~~~~~~-- 144 (252)
T PRK07677 79 IDALINNAAGNF-------ICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIK-----GNIINMVATYAWDA-- 144 (252)
T ss_pred ccEEEECCCCCC-------CCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCC-----EEEEEEcChhhccC--
Confidence 999999999753 3455677889999999999999999999999998654321 38999999988765
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhcc-CCCCeEEEEEecccccCC-CCcc----------cccCCCCCCCCChHHHHH
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGR-KKDPVICILLHPGTVDTD-LSRP----------FQRNVPEGKLFTKEFSVQ 255 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~-~~~~i~v~~i~Pg~v~t~-~~~~----------~~~~~~~~~~~~~~~~a~ 255 (282)
.+....|+++|+++++|+++++.|+.+ + +|++++|+||+++|. +... ..+..+...+.+|+++++
T Consensus 145 -~~~~~~Y~~sKaa~~~~~~~la~e~~~~~--gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~ 221 (252)
T PRK07677 145 -GPGVIHSAAAKAGVLAMTRTLAVEWGRKY--GIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVPLGRLGTPEEIAG 221 (252)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHhCccc--CeEEEEEeecccccccccccccCCHHHHHHHhccCCCCCCCCHHHHHH
Confidence 456678999999999999999999974 5 899999999999853 2211 112234456779999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCccc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+.+++++....++|+.+.+||+.+
T Consensus 222 ~~~~l~~~~~~~~~g~~~~~~gg~~ 246 (252)
T PRK07677 222 LAYFLLSDEAAYINGTCITMDGGQW 246 (252)
T ss_pred HHHHHcCccccccCCCEEEECCCee
Confidence 9999998877899999999999854
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=259.62 Aligned_cols=235 Identities=20% Similarity=0.237 Sum_probs=200.6
Q ss_pred cccCcEEEEecCCC-chhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc-CC-CceeEEEeeCCChhHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASR-GIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR-FP-ERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 25 ~~~gk~vlItGas~-giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~-~~-~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.++||+++||||++ |||++++++|+++|++ |++.+|+.++.+...+.+.+ .+ .++.++++|++++++++++++++
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 91 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR--VVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAA 91 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 45689999999985 9999999999999988 99999988776654443332 33 47889999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeecc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSAR 180 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~ 180 (282)
.+.++++|++|||+|... ..+..+.+.++|++.+++|+.+++.+++.+.|.|..++ .| .|++++|.
T Consensus 92 ~~~~g~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g------~iv~~ss~ 158 (262)
T PRK07831 92 VERLGRLDVLVNNAGLGG-------QTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGG------VIVNNASV 158 (262)
T ss_pred HHHcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCc------EEEEeCch
Confidence 999999999999999764 44566777899999999999999999999999998765 43 89999998
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCChH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFTKE 251 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~~~ 251 (282)
.+..+ .++...|+++|+++++++++++.|++++ +|+|++|+||+++|++.+.. ....+..+..+|+
T Consensus 159 ~~~~~---~~~~~~Y~~sKaal~~~~~~la~e~~~~--gI~v~~i~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~r~~~p~ 233 (262)
T PRK07831 159 LGWRA---QHGQAHYAAAKAGVMALTRCSALEAAEY--GVRINAVAPSIAMHPFLAKVTSAELLDELAAREAFGRAAEPW 233 (262)
T ss_pred hhcCC---CCCCcchHHHHHHHHHHHHHHHHHhCcc--CeEEEEEeeCCccCcccccccCHHHHHHHHhcCCCCCCcCHH
Confidence 87765 5677899999999999999999999988 89999999999999976432 1233455677999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++++.+.+++++....++|+.+.+|+++
T Consensus 234 ~va~~~~~l~s~~~~~itG~~i~v~~~~ 261 (262)
T PRK07831 234 EVANVIAFLASDYSSYLTGEVVSVSSQH 261 (262)
T ss_pred HHHHHHHHHcCchhcCcCCceEEeCCCC
Confidence 9999999999988889999999999853
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=262.72 Aligned_cols=232 Identities=21% Similarity=0.303 Sum_probs=190.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||+++||||++|||++++++|+++|++ |++++|+.+..+++.+ ..+.++.++++|++|.+++.++++++.+
T Consensus 1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~l~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (262)
T TIGR03325 1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGAR--VAVLDKSAAGLQELEA---AHGDAVVGVEGDVRSLDDHKEAVARCVA 75 (262)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHh---hcCCceEEEEeccCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999988 9999998766554332 2345789999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccc----hhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVE----KSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~----~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
+++++|++|||||.... ..+..+.+ .+.|++.+++|+.+++.+++++.|.|.+++ | ++|+++|
T Consensus 76 ~~g~id~li~~Ag~~~~------~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g------~iv~~sS 142 (262)
T TIGR03325 76 AFGKIDCLIPNAGIWDY------STALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASR-G------SVIFTIS 142 (262)
T ss_pred HhCCCCEEEECCCCCcc------CCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcC-C------CEEEEec
Confidence 99999999999997531 11222222 257999999999999999999999997653 3 7888888
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc------------------ccC
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF------------------QRN 241 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~------------------~~~ 241 (282)
..+..+ .++...|+++|+++++|+++++.|+++ +|+||+|+||+++|++.... ...
T Consensus 143 ~~~~~~---~~~~~~Y~~sKaa~~~l~~~la~e~~~---~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (262)
T TIGR03325 143 NAGFYP---NGGGPLYTAAKHAVVGLVKELAFELAP---YVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKSV 216 (262)
T ss_pred cceecC---CCCCchhHHHHHHHHHHHHHHHHhhcc---CeEEEEEecCCCcCCCccccccccccccccccchhhhhhhc
Confidence 877755 456678999999999999999999976 49999999999999985421 112
Q ss_pred CCCCCCCChHHHHHHHHHHHhhc-CCCCCCceeecCCcc
Q 023441 242 VPEGKLFTKEFSVQKLLNIINNI-KSHDNGKFFAWDGQE 279 (282)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~~g~~~~~d~~~ 279 (282)
.|..+..+|+++|+.+.+++++. ...++|+.+.+||++
T Consensus 217 ~p~~r~~~p~eva~~~~~l~s~~~~~~~tG~~i~vdgg~ 255 (262)
T TIGR03325 217 LPIGRMPDAEEYTGAYVFFATRGDTVPATGAVLNYDGGM 255 (262)
T ss_pred CCCCCCCChHHhhhheeeeecCCCcccccceEEEecCCe
Confidence 34456679999999999999875 467999999999985
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=258.77 Aligned_cols=239 Identities=23% Similarity=0.359 Sum_probs=207.3
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..++++||+++||||+++||++++++|+++|++ |++++|+.+.++...+.+...+.++.++++|++|++++.++++++
T Consensus 5 ~~~~~~~k~ilItGas~~IG~~la~~l~~~G~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 5 QRFSLAGQVALVTGSARGLGFEIARALAGAGAH--VLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred cccCCCCCEEEEECCCchHHHHHHHHHHHcCCe--EEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 356789999999999999999999999999987 999999987666555555555668999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++++++|++|||+|... ..+..+.+.++|++.+++|+.+++.+.+.+.+.|.+++.+ ++|++||..
T Consensus 83 ~~~~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~iv~~ss~~ 149 (256)
T PRK06124 83 DAEHGRLDILVNNVGARD-------RRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYG------RIIAITSIA 149 (256)
T ss_pred HHhcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------EEEEEeech
Confidence 999999999999999864 4566677788999999999999999999999999876654 899999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKE 251 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~ 251 (282)
+..+ .++...|+++|++++.+++.++.|+.+. ++++++|+||+++|++..... ...+...+.+|+
T Consensus 150 ~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (256)
T PRK06124 150 GQVA---RAGDAVYPAAKQGLTGLMRALAAEFGPH--GITSNAIAPGYFATETNAAMAADPAVGPWLAQRTPLGRWGRPE 224 (256)
T ss_pred hccC---CCCccHhHHHHHHHHHHHHHHHHHHHHh--CcEEEEEEECCccCcchhhhccChHHHHHHHhcCCCCCCCCHH
Confidence 8766 5677899999999999999999999887 899999999999999754321 122445677899
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++++.+++++++....++|+.+.+||++.
T Consensus 225 ~~a~~~~~l~~~~~~~~~G~~i~~dgg~~ 253 (256)
T PRK06124 225 EIAGAAVFLASPAASYVNGHVLAVDGGYS 253 (256)
T ss_pred HHHHHHHHHcCcccCCcCCCEEEECCCcc
Confidence 99999999999888899999999998764
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=256.76 Aligned_cols=229 Identities=24% Similarity=0.296 Sum_probs=196.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||++|||||++|||++++++|+++|++ |++++|+.+. ...+.++.++++|++|+++++++++.+.+
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~--v~~~~r~~~~--------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 71 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGAT--VVVCGRRAPE--------TVDGRPAEFHAADVRDPDQVAALVDAIVE 71 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCChhh--------hhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999999999987 9999998754 11245788999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||+|... ..+..+.+.+.|++.+++|+.+++.+++.+.+.|.++..+ ++||++||..+.
T Consensus 72 ~~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-----g~ii~isS~~~~ 139 (252)
T PRK07856 72 RHGRLDVLVNNAGGSP-------YALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGG-----GSIVNIGSVSGR 139 (252)
T ss_pred HcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-----cEEEEEcccccC
Confidence 9999999999999864 4455667788999999999999999999999998765321 389999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCChHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTKEFS 253 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~~~~~ 253 (282)
.+ .++...|+++|++++.|+++++.|+++. |++++|+||+++|++.... ....+.....+|+++
T Consensus 140 ~~---~~~~~~Y~~sK~a~~~l~~~la~e~~~~---i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 213 (252)
T PRK07856 140 RP---SPGTAAYGAAKAGLLNLTRSLAVEWAPK---VRVNAVVVGLVRTEQSELHYGDAEGIAAVAATVPLGRLATPADI 213 (252)
T ss_pred CC---CCCCchhHHHHHHHHHHHHHHHHHhcCC---eEEEEEEeccccChHHhhhccCHHHHHHHhhcCCCCCCcCHHHH
Confidence 65 5677899999999999999999999764 9999999999999975432 122344566789999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++.+++++++....++|+.+.+||++.
T Consensus 214 a~~~~~L~~~~~~~i~G~~i~vdgg~~ 240 (252)
T PRK07856 214 AWACLFLASDLASYVSGANLEVHGGGE 240 (252)
T ss_pred HHHHHHHcCcccCCccCCEEEECCCcc
Confidence 999999998878899999999999864
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=257.97 Aligned_cols=234 Identities=22% Similarity=0.335 Sum_probs=200.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||++|||||+++||.+++++|+++|++ |++++|+....+...+. . +.++.++++|++++++++++++++.+
T Consensus 11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~--Vi~~~r~~~~~~~~~~~-~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 85 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKGAR--VALLDRSEDVAEVAAQL-L--GGNAKGLVCDVSDSQSVEAAVAAVIS 85 (255)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHh-h--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999999999987 99999987643222222 1 34677999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||+|... ..+..+.+.++++..+++|+.+++++++.+.+.|.+++.+ +||++||..+.
T Consensus 86 ~~~~~d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~~sS~~~~ 152 (255)
T PRK06841 86 AFGRIDILVNSAGVAL-------LAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGG------KIVNLASQAGV 152 (255)
T ss_pred HhCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCc------eEEEEcchhhc
Confidence 9999999999999864 4455667788999999999999999999999999876554 89999999877
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCChHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFTKEFSV 254 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~~~~~a 254 (282)
.+ .+....|+++|++++.++++++.|+++. +|++++|+||+++|++.... ....+...+.+|++++
T Consensus 153 ~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va 227 (255)
T PRK06841 153 VA---LERHVAYCASKAGVVGMTKVLALEWGPY--GITVNAISPTVVLTELGKKAWAGEKGERAKKLIPAGRFAYPEEIA 227 (255)
T ss_pred cC---CCCCchHHHHHHHHHHHHHHHHHHHHhh--CeEEEEEEeCcCcCcccccccchhHHHHHHhcCCCCCCcCHHHHH
Confidence 66 6677899999999999999999999988 89999999999999975432 1233455678999999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCccc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.+++++++....++|+.+.+||++.
T Consensus 228 ~~~~~l~~~~~~~~~G~~i~~dgg~~ 253 (255)
T PRK06841 228 AAALFLASDAAAMITGENLVIDGGYT 253 (255)
T ss_pred HHHHHHcCccccCccCCEEEECCCcc
Confidence 99999999888999999999999864
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=284.58 Aligned_cols=235 Identities=24% Similarity=0.356 Sum_probs=201.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
....||++|||||++|||+++|++|+++|++ |++.+|+.++++.+.+.. +.++.++++|++|+++++++++++.+
T Consensus 265 ~~~~~k~~lItGas~gIG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 339 (520)
T PRK06484 265 LAESPRVVAITGGARGIGRAVADRFAAAGDR--LLIIDRDAEGAKKLAEAL---GDEHLSVQADITDEAAVESAFAQIQA 339 (520)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHh---CCceeEEEccCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999987 999999887665544332 45778899999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|+||||||... +..+..+.+.++|++.+++|+.+++++++.++|.|.+ .| +||++||..+.
T Consensus 340 ~~g~id~li~nAg~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~g------~iv~isS~~~~ 405 (520)
T PRK06484 340 RWGRLDVLVNNAGIAE------VFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQ--GG------VIVNLGSIASL 405 (520)
T ss_pred HcCCCCEEEECCCCcC------CCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhcc--CC------EEEEECchhhc
Confidence 9999999999999863 1345667788999999999999999999999999932 23 89999999988
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-----------cCCCCCCCCChHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-----------RNVPEGKLFTKEF 252 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-----------~~~~~~~~~~~~~ 252 (282)
.+ .++...|+++|++++.|+++++.|++++ +|+||+|+||+++|++.+... +..+.....+|++
T Consensus 406 ~~---~~~~~~Y~asKaal~~l~~~la~e~~~~--gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 480 (520)
T PRK06484 406 LA---LPPRNAYCASKAAVTMLSRSLACEWAPA--GIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIPLGRLGDPEE 480 (520)
T ss_pred CC---CCCCchhHHHHHHHHHHHHHHHHHhhhh--CeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCCCCCCcCHHH
Confidence 76 6677899999999999999999999988 899999999999999864321 2234456679999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
+|+.+++++++....++|+.+.+||++..|
T Consensus 481 ia~~~~~l~s~~~~~~~G~~i~vdgg~~~~ 510 (520)
T PRK06484 481 VAEAIAFLASPAASYVNGATLTVDGGWTAF 510 (520)
T ss_pred HHHHHHHHhCccccCccCcEEEECCCccCC
Confidence 999999999887889999999999997543
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=258.47 Aligned_cols=235 Identities=19% Similarity=0.239 Sum_probs=194.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.++++|+++||||++|||++++++|+++|++ |++++|+.. .+...+.+...+.++.++++|++|.+++.++++++.+
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~~--v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGAR--VVLVDRSEL-VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVE 80 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHH
Confidence 4478999999999999999999999999987 899999853 2233333334456788999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|++|||||... ...+..+.+.++|++.+++|+.+++.+++.+.|.|.+++.| +||++||..+.
T Consensus 81 ~~~~id~lv~nAg~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g------~iv~~sS~~~~ 148 (260)
T PRK12823 81 AFGRIDVLINNVGGTI------WAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGG------AIVNVSSIATR 148 (260)
T ss_pred HcCCCeEEEECCcccc------CCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC------eEEEEcCcccc
Confidence 9999999999999642 13456677888999999999999999999999999876654 89999998653
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------------------ccCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------------------QRNV 242 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------------------~~~~ 242 (282)
+ .....|+++|++++.|+++++.|++++ +|++++|+||+++|++.... ....
T Consensus 149 -~----~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (260)
T PRK12823 149 -G----INRVPYSAAKGGVNALTASLAFEYAEH--GIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSS 221 (260)
T ss_pred -C----CCCCccHHHHHHHHHHHHHHHHHhccc--CcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccC
Confidence 2 234679999999999999999999988 89999999999999852110 0112
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 243 PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.....+|+++++.+.+++++....++|+.+.+||++.
T Consensus 222 ~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~~ 259 (260)
T PRK12823 222 LMKRYGTIDEQVAAILFLASDEASYITGTVLPVGGGDL 259 (260)
T ss_pred CcccCCCHHHHHHHHHHHcCcccccccCcEEeecCCCC
Confidence 33455689999999999998877889999999999875
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=263.85 Aligned_cols=237 Identities=17% Similarity=0.239 Sum_probs=184.5
Q ss_pred ccccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCC---------CcccccccccccCCC-----ceeEEEee
Q 023441 24 VKWKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNP---------NGATGLLDLKNRFPE-----RLDVLQLD 87 (282)
Q Consensus 24 ~~~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~---------~~~~~~~~~~~~~~~-----~v~~~~~D 87 (282)
.+++||++||||++ +|||+++|++|+++|++ |++.++.+ +..+.........+. ++..+.+|
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~--Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d 81 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGAT--ILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDAS 81 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCE--EEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhh
Confidence 56789999999995 99999999999999998 77776541 111100000001111 12223445
Q ss_pred CCChh------------------HHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHH
Q 023441 88 LTVES------------------TIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149 (282)
Q Consensus 88 ls~~~------------------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 149 (282)
+++.+ +++++++++.+++|++|+||||||.... ...++.+.+.++|++.+++|+.++
T Consensus 82 ~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~-----~~~~~~~~~~e~~~~~~~vNl~g~ 156 (299)
T PRK06300 82 FDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPE-----ISKPLLETSRKGYLAALSTSSYSF 156 (299)
T ss_pred cCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcc-----cCCChhhCCHHHHHHHHHHHhHHH
Confidence 44443 5899999999999999999999997520 135667888999999999999999
Q ss_pred HHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCCCcc-cchhhHHHHHHHHHHHHHHhcc-CCCCeEEEEEec
Q 023441 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWH-SYRASKAALNQLTKSVSVEFGR-KKDPVICILLHP 227 (282)
Q Consensus 150 ~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~~-~Y~~sKa~~~~l~~~la~e~~~-~~~~i~v~~i~P 227 (282)
+++++++.|.|.++ | +|++++|..+..+ .+.+. .|++||+++.+|+++++.|+++ + +||||+|+|
T Consensus 157 ~~l~~a~~p~m~~~--G------~ii~iss~~~~~~---~p~~~~~Y~asKaAl~~lt~~la~el~~~~--gIrVn~V~P 223 (299)
T PRK06300 157 VSLLSHFGPIMNPG--G------STISLTYLASMRA---VPGYGGGMSSAKAALESDTKVLAWEAGRRW--GIRVNTISA 223 (299)
T ss_pred HHHHHHHHHHhhcC--C------eEEEEeehhhcCc---CCCccHHHHHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEe
Confidence 99999999999754 2 7999999888766 44543 7999999999999999999986 5 899999999
Q ss_pred ccccCCCCccc----------ccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 228 GTVDTDLSRPF----------QRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 228 g~v~t~~~~~~----------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+++|++.... ....+..+..+|++++..+.+++++....++|+.+.+||++.
T Consensus 224 G~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdGG~~ 286 (299)
T PRK06300 224 GPLASRAGKAIGFIERMVDYYQDWAPLPEPMEAEQVGAAAAFLVSPLASAITGETLYVDHGAN 286 (299)
T ss_pred CCccChhhhcccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 99999986432 122344567799999999999999888899999999999863
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=257.65 Aligned_cols=238 Identities=19% Similarity=0.239 Sum_probs=200.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC-cccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN-GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~-~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+++||+++||||++|||+++|++|+++|+. |++.+|+.. ..+...+.+...+.++.++.+|++|.++++++++.+.
T Consensus 3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~--vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~ 80 (261)
T PRK08936 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAK--VVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAV 80 (261)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999987 888888553 3333444444445678899999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|++|||+|... ..+..+.+.+.|++.+++|+.+++.+++.+.+.|.+++.. ++||++||..+
T Consensus 81 ~~~g~id~lv~~ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~-----g~iv~~sS~~~ 148 (261)
T PRK08936 81 KEFGTLDVMINNAGIEN-------AVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIK-----GNIINMSSVHE 148 (261)
T ss_pred HHcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-----cEEEEEccccc
Confidence 99999999999999864 4456677889999999999999999999999999875421 38999999877
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~ 252 (282)
..+ .+....|+++|+++..++++++.++.+. +|+|++|+||+++|++.+... ...+.....+|++
T Consensus 149 ~~~---~~~~~~Y~~sKaa~~~~~~~la~e~~~~--gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (261)
T PRK08936 149 QIP---WPLFVHYAASKGGVKLMTETLAMEYAPK--GIRVNNIGPGAINTPINAEKFADPKQRADVESMIPMGYIGKPEE 223 (261)
T ss_pred cCC---CCCCcccHHHHHHHHHHHHHHHHHHhhc--CeEEEEEEECcCCCCccccccCCHHHHHHHHhcCCCCCCcCHHH
Confidence 655 6677899999999999999999999987 899999999999999854211 1234456778999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++.+.+++++....++|..+.+|++..
T Consensus 224 va~~~~~l~s~~~~~~~G~~i~~d~g~~ 251 (261)
T PRK08936 224 IAAVAAWLASSEASYVTGITLFADGGMT 251 (261)
T ss_pred HHHHHHHHcCcccCCccCcEEEECCCcc
Confidence 9999999999888899999999998853
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=263.80 Aligned_cols=225 Identities=30% Similarity=0.472 Sum_probs=195.6
Q ss_pred cCC--CchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc-CCccE
Q 023441 35 GAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY-GSLNL 110 (282)
Q Consensus 35 Gas--~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~-~~id~ 110 (282)
|++ +|||+++|++|+++|++ |++.+|+.++.++ +.++..+.+.+ ++++|++++++++++++++.+.+ |+||+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~--V~~~~~~~~~~~~~~~~l~~~~~~~--~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGAN--VILTDRNEEKLADALEELAKEYGAE--VIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEE--EEEEESSHHHHHHHHHHHHHHTTSE--EEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHCCCE--EEEEeCChHHHHHHHHHHHHHcCCc--eEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 666 99999999999999998 9999999987644 44555555545 59999999999999999999999 99999
Q ss_pred EEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCC
Q 023441 111 LINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLG 190 (282)
Q Consensus 111 lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~ 190 (282)
||||+|...... ...++.+.+.++|++.+++|+.+++.+++.+.|.|.+++ +||++||..+..+ .+
T Consensus 77 lV~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------sii~iss~~~~~~---~~ 142 (241)
T PF13561_consen 77 LVNNAGISPPSN---VEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGG--------SIINISSIAAQRP---MP 142 (241)
T ss_dssp EEEEEESCTGGG---TSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEE--------EEEEEEEGGGTSB---ST
T ss_pred EEeccccccccc---CCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--------Ccccccchhhccc---Cc
Confidence 999999875100 135677788999999999999999999999999887753 8999999987766 67
Q ss_pred CcccchhhHHHHHHHHHHHHHHhcc-CCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCChHHHHHHHHH
Q 023441 191 GWHSYRASKAALNQLTKSVSVEFGR-KKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTKEFSVQKLLN 259 (282)
Q Consensus 191 ~~~~Y~~sKa~~~~l~~~la~e~~~-~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~~~~~a~~~~~ 259 (282)
++..|+++|+++++|+|+++.|+++ + |||||+|+||++.|++.+.. ....|..+..+|+|+|+.+.+
T Consensus 143 ~~~~y~~sKaal~~l~r~lA~el~~~~--gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~pl~r~~~~~evA~~v~f 220 (241)
T PF13561_consen 143 GYSAYSASKAALEGLTRSLAKELAPKK--GIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIPLGRLGTPEEVANAVLF 220 (241)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHGGHG--TEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHSTTSSHBEHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhcccc--CeeeeeecccceeccchhccccccchhhhhhhhhccCCCcCHHHHHHHHHH
Confidence 7789999999999999999999999 8 99999999999999975432 234667777899999999999
Q ss_pred HHhhcCCCCCCceeecCCcc
Q 023441 260 IINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 260 ~~~~~~~~~~g~~~~~d~~~ 279 (282)
++++....+||+.+.+|||+
T Consensus 221 L~s~~a~~itG~~i~vDGG~ 240 (241)
T PF13561_consen 221 LASDAASYITGQVIPVDGGF 240 (241)
T ss_dssp HHSGGGTTGTSEEEEESTTG
T ss_pred HhCccccCccCCeEEECCCc
Confidence 99999999999999999986
|
... |
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=256.51 Aligned_cols=232 Identities=23% Similarity=0.364 Sum_probs=196.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||++|||||++|||.+++++|+++|++ |++++|+.+.. .+.++.++++|++|+++++++++++.+
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~--v~~~~r~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGAR--VVTTARSRPDD---------LPEGVEFVAADLTTAEGCAAVARAVLE 73 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCE--EEEEeCChhhh---------cCCceeEEecCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999999987 99999986532 134688999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||+|.... ...++.+.+.+.|++.+++|+.+++.+++.+.|.|.+++.| +||++||..+.
T Consensus 74 ~~~~id~vi~~ag~~~~-----~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g------~ii~isS~~~~ 142 (260)
T PRK06523 74 RLGGVDILVHVLGGSSA-----PAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSG------VIIHVTSIQRR 142 (260)
T ss_pred HcCCCCEEEECCccccc-----CCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCc------EEEEEeccccc
Confidence 99999999999997531 12345567788999999999999999999999999876554 89999998876
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------------------cC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------------------RN 241 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------------------~~ 241 (282)
.+. ......|+++|++++.|+++++.++++. +|++++|+||+++|++...+. ..
T Consensus 143 ~~~--~~~~~~Y~~sK~a~~~l~~~~a~~~~~~--gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (260)
T PRK06523 143 LPL--PESTTAYAAAKAALSTYSKSLSKEVAPK--GVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLGG 218 (260)
T ss_pred CCC--CCCcchhHHHHHHHHHHHHHHHHHHhhc--CcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhcc
Confidence 542 1256889999999999999999999988 899999999999999753211 11
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 242 VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
.+..+..+|+++++.+.+++++....++|+.+.+||++.+
T Consensus 219 ~p~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdgg~~~ 258 (260)
T PRK06523 219 IPLGRPAEPEEVAELIAFLASDRAASITGTEYVIDGGTVP 258 (260)
T ss_pred CccCCCCCHHHHHHHHHHHhCcccccccCceEEecCCccC
Confidence 3445567899999999999998888999999999998764
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=265.51 Aligned_cols=223 Identities=17% Similarity=0.222 Sum_probs=192.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++++|++|||||++|||++++++|+++|++ |++++|+++.++++.+.+.+.+.++.++.+|++|.++++++++++.+
T Consensus 3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~--Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (330)
T PRK06139 3 GPLHGAVVVITGASSGIGQATAEAFARRGAR--LVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAAS 80 (330)
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999998 99999999888776666666677899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||||... ..++.+.+.+++++.+++|+.+++++++.+.|.|.+++.| .||++||..+.
T Consensus 81 ~~g~iD~lVnnAG~~~-------~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g------~iV~isS~~~~ 147 (330)
T PRK06139 81 FGGRIDVWVNNVGVGA-------VGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHG------IFINMISLGGF 147 (330)
T ss_pred hcCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC------EEEEEcChhhc
Confidence 9999999999999875 5566778889999999999999999999999999887665 89999998887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-----CCCCCCCCChHHHHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-----NVPEGKLFTKEFSVQKLL 258 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-----~~~~~~~~~~~~~a~~~~ 258 (282)
.+ .+....|++||+++.+|+++++.|+... .+|+|++|+||+++|++...... ..+.....+|+++|+.++
T Consensus 148 ~~---~p~~~~Y~asKaal~~~~~sL~~El~~~-~gI~V~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~pe~vA~~il 223 (330)
T PRK06139 148 AA---QPYAAAYSASKFGLRGFSEALRGELADH-PDIHVCDVYPAFMDTPGFRHGANYTGRRLTPPPPVYDPRRVAKAVV 223 (330)
T ss_pred CC---CCCchhHHHHHHHHHHHHHHHHHHhCCC-CCeEEEEEecCCccCcccccccccccccccCCCCCCCHHHHHHHHH
Confidence 66 6677899999999999999999999753 27999999999999998643111 112334579999999999
Q ss_pred HHHhhcC
Q 023441 259 NIINNIK 265 (282)
Q Consensus 259 ~~~~~~~ 265 (282)
.++....
T Consensus 224 ~~~~~~~ 230 (330)
T PRK06139 224 RLADRPR 230 (330)
T ss_pred HHHhCCC
Confidence 9987543
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=254.87 Aligned_cols=234 Identities=19% Similarity=0.259 Sum_probs=197.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec-CCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-NPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r-~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++|++|||||++|||++++++|+++|++ |+++.+ +.+..+.+.+.+...+.++.++++|++|.++++++++++.+++
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G~~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFD--IGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999998 777755 4444444445555556789999999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
+++|++|||+|... .....+.+.+++++.+++|+.+++.+++++.+.|.+++.+ ++||++||..+..+
T Consensus 79 ~~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~-----g~ii~isS~~~~~~ 146 (256)
T PRK12743 79 GRIDVLVNNAGAMT-------KAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQG-----GRIINITSVHEHTP 146 (256)
T ss_pred CCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-----eEEEEEeeccccCC
Confidence 99999999999874 3445567789999999999999999999999999765422 38999999877665
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHHHHHH
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFSVQKL 257 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~a~~~ 257 (282)
.++...|+++|++++.++++++.++.++ +|++++|+||+++|++..... ...+.....+|+++++.+
T Consensus 147 ---~~~~~~Y~~sK~a~~~l~~~la~~~~~~--~i~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~ 221 (256)
T PRK12743 147 ---LPGASAYTAAKHALGGLTKAMALELVEH--GILVNAVAPGAIATPMNGMDDSDVKPDSRPGIPLGRPGDTHEIASLV 221 (256)
T ss_pred ---CCCcchhHHHHHHHHHHHHHHHHHhhhh--CeEEEEEEeCCccCccccccChHHHHHHHhcCCCCCCCCHHHHHHHH
Confidence 5677899999999999999999999988 899999999999999864321 123445567899999999
Q ss_pred HHHHhhcCCCCCCceeecCCcc
Q 023441 258 LNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 258 ~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.++++.....++|..+.+||+.
T Consensus 222 ~~l~~~~~~~~~G~~~~~dgg~ 243 (256)
T PRK12743 222 AWLCSEGASYTTGQSLIVDGGF 243 (256)
T ss_pred HHHhCccccCcCCcEEEECCCc
Confidence 9999887889999999999985
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=257.48 Aligned_cols=235 Identities=23% Similarity=0.373 Sum_probs=197.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||++|||||++|||++++++|+++|++ |++.+|+....+ ..++.++++|++|+++++++++++.+
T Consensus 5 ~~l~~k~vlItG~s~gIG~~la~~l~~~G~~--v~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (266)
T PRK06171 5 LNLQGKIIIVTGGSSGIGLAIVKELLANGAN--VVNADIHGGDGQ---------HENYQFVPTDVSSAEEVNHTVAEIIE 73 (266)
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEEeCCccccc---------cCceEEEEccCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999999999988 899888876542 23688999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCC--CcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQ--PETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~--~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++++|++|||||......... ...+..+.+.++|++.+++|+.+++.+++++.+.|.+++.| +||++||..
T Consensus 74 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g------~iv~isS~~ 147 (266)
T PRK06171 74 KFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDG------VIVNMSSEA 147 (266)
T ss_pred HcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCc------EEEEEcccc
Confidence 9999999999999764211110 01223457789999999999999999999999999876654 899999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEeccccc-CCCCcc--------------------ccc
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVD-TDLSRP--------------------FQR 240 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~-t~~~~~--------------------~~~ 240 (282)
+..+ .++...|+++|+++++|+++++.|++++ +|++|+|+||+++ |++... +..
T Consensus 148 ~~~~---~~~~~~Y~~sK~a~~~l~~~la~e~~~~--gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (266)
T PRK06171 148 GLEG---SEGQSCYAATKAALNSFTRSWAKELGKH--NIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQLRAGYTK 222 (266)
T ss_pred ccCC---CCCCchhHHHHHHHHHHHHHHHHHhhhc--CeEEEEEeccccccCCCcChhhhhhhccccCCCHHHHHhhhcc
Confidence 8766 5677899999999999999999999988 8999999999996 555321 111
Q ss_pred --CCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 241 --NVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 241 --~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
..|..+...|+++|+.+.+++++....++|+.+.+||+.-
T Consensus 223 ~~~~p~~r~~~~~eva~~~~fl~s~~~~~itG~~i~vdgg~~ 264 (266)
T PRK06171 223 TSTIPLGRSGKLSEVADLVCYLLSDRASYITGVTTNIAGGKT 264 (266)
T ss_pred cccccCCCCCCHHHhhhheeeeeccccccceeeEEEecCccc
Confidence 3355677799999999999999888999999999999853
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=262.86 Aligned_cols=242 Identities=20% Similarity=0.259 Sum_probs=196.9
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC-cccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN-GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~-~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..+++||+++||||++|||+++|++|+++|++ |++.+++.. ..+...+.+...+.++.++++|++|.++++++++.+
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~--Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~ 84 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGAT--VVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATA 84 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999999999998 888887543 344444444455678999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCC-ccceeEEEEeecc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGI-ERDVAVVANLSAR 180 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~-~~~~~~iv~~ss~ 180 (282)
.+ ++++|++|||||... ...+.+.+.++|+..+++|+.+++++++.+.++|.++.... ....++||++||.
T Consensus 85 ~~-~g~iD~li~nAG~~~-------~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~ 156 (306)
T PRK07792 85 VG-LGGLDIVVNNAGITR-------DRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSE 156 (306)
T ss_pred HH-hCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCc
Confidence 99 999999999999875 44566777889999999999999999999999887532100 0011389999998
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCC-----CCCCCChHHHHH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVP-----EGKLFTKEFSVQ 255 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~-----~~~~~~~~~~a~ 255 (282)
.+..+ .++...|+++|+++++|+++++.|+.++ +|+||+|+||. .|++........+ .....+|++++.
T Consensus 157 ~~~~~---~~~~~~Y~asKaal~~l~~~la~e~~~~--gI~vn~i~Pg~-~t~~~~~~~~~~~~~~~~~~~~~~pe~va~ 230 (306)
T PRK07792 157 AGLVG---PVGQANYGAAKAGITALTLSAARALGRY--GVRANAICPRA-RTAMTADVFGDAPDVEAGGIDPLSPEHVVP 230 (306)
T ss_pred ccccC---CCCCchHHHHHHHHHHHHHHHHHHhhhc--CeEEEEECCCC-CCchhhhhccccchhhhhccCCCCHHHHHH
Confidence 88766 5567789999999999999999999988 89999999994 8887554322111 123358999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCccc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+.+++++....++|+.+.++|+.+
T Consensus 231 ~v~~L~s~~~~~~tG~~~~v~gg~~ 255 (306)
T PRK07792 231 LVQFLASPAAAEVNGQVFIVYGPMV 255 (306)
T ss_pred HHHHHcCccccCCCCCEEEEcCCeE
Confidence 9999998877889999999998764
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=255.41 Aligned_cols=235 Identities=21% Similarity=0.304 Sum_probs=200.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|.+++|+++||||++|||.++|++|+++|++ |++++|+.+..++..+.. +.++.++++|++|+++++++++++.+
T Consensus 2 ~~l~~~~vlItGas~~iG~~ia~~l~~~G~~--v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (257)
T PRK07067 2 MRLQGKVALLTGAASGIGEAVAERYLAEGAR--VVIADIKPARARLAALEI---GPAAIAVSLDVTRQDSIDRIVAAAVE 76 (257)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHcCCE--EEEEcCCHHHHHHHHHHh---CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999988 999999987665543332 34688999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|++|||+|... ..+..+.+.+++++.+++|+.+++.+++++.+.+.+++.+ ++||++||..+.
T Consensus 77 ~~~~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-----~~iv~~sS~~~~ 144 (257)
T PRK07067 77 RFGGIDILFNNAALFD-------MAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRG-----GKIINMASQAGR 144 (257)
T ss_pred HcCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCC-----cEEEEeCCHHhC
Confidence 9999999999999864 4456667788999999999999999999999998765322 389999998777
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-------------------cCCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-------------------RNVPE 244 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-------------------~~~~~ 244 (282)
.+ .+....|++||++++.++++++.|+.++ +|+++++.||+++|++.+... ...+.
T Consensus 145 ~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
T PRK07067 145 RG---EALVSHYCATKAAVISYTQSAALALIRH--GINVNAIAPGVVDTPMWDQVDALFARYENRPPGEKKRLVGEAVPL 219 (257)
T ss_pred CC---CCCCchhhhhHHHHHHHHHHHHHHhccc--CeEEEEEeeCcccchhhhhhhhhhhhccCCCHHHHHHHHhhcCCC
Confidence 66 5667899999999999999999999887 899999999999998754211 12344
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 245 GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+..+|+++|+.+.++++.....++|+.+.+||+..
T Consensus 220 ~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~~ 255 (257)
T PRK07067 220 GRMGVPDDLTGMALFLASADADYIVAQTYNVDGGNW 255 (257)
T ss_pred CCccCHHHHHHHHHHHhCcccccccCcEEeecCCEe
Confidence 567789999999999999888899999999999864
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=239.21 Aligned_cols=230 Identities=24% Similarity=0.317 Sum_probs=202.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.++.|+++++||+..|||++++++|++.|+. |+..+|++..+..+..+. +..+..+..|+++++.+.+++...
T Consensus 3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~--ViAvaR~~a~L~sLV~e~---p~~I~Pi~~Dls~wea~~~~l~~v-- 75 (245)
T KOG1207|consen 3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQ--VIAVARNEANLLSLVKET---PSLIIPIVGDLSAWEALFKLLVPV-- 75 (245)
T ss_pred ccccceEEEeecccccccHHHHHHHHhcCCE--EEEEecCHHHHHHHHhhC---CcceeeeEecccHHHHHHHhhccc--
Confidence 3678999999999999999999999999998 999999998877665554 457999999999988887776654
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcC-CCCCccceeEEEEeecccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVG-GTGIERDVAVVANLSARVG 182 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~-~~g~~~~~~~iv~~ss~~~ 182 (282)
+.+|++|||||+.. ..++.+.+.+.++..|++|+.+.+.+.|...+.+..+ ..| .|+|+||.++
T Consensus 76 --~pidgLVNNAgvA~-------~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~G------aIVNvSSqas 140 (245)
T KOG1207|consen 76 --FPIDGLVNNAGVAT-------NHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKG------AIVNVSSQAS 140 (245)
T ss_pred --Cchhhhhccchhhh-------cchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCc------eEEEecchhc
Confidence 68999999999986 7788899999999999999999999999977765543 443 7999999999
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc----------cccCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP----------FQRNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~----------~~~~~~~~~~~~~~~ 252 (282)
.++ ...+..|+++|+++++++++|+.|++++ +||||+++|..+-|+|.+. +..+.|..++...++
T Consensus 141 ~R~---~~nHtvYcatKaALDmlTk~lAlELGp~--kIRVNsVNPTVVmT~MG~dnWSDP~K~k~mL~riPl~rFaEV~e 215 (245)
T KOG1207|consen 141 IRP---LDNHTVYCATKAALDMLTKCLALELGPQ--KIRVNSVNPTVVMTDMGRDNWSDPDKKKKMLDRIPLKRFAEVDE 215 (245)
T ss_pred ccc---cCCceEEeecHHHHHHHHHHHHHhhCcc--eeEeeccCCeEEEecccccccCCchhccchhhhCchhhhhHHHH
Confidence 887 7889999999999999999999999999 9999999999999998653 223455667778999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+..++.+++++.++..+|..+.++||..
T Consensus 216 VVnA~lfLLSd~ssmttGstlpveGGfs 243 (245)
T KOG1207|consen 216 VVNAVLFLLSDNSSMTTGSTLPVEGGFS 243 (245)
T ss_pred HHhhheeeeecCcCcccCceeeecCCcc
Confidence 9999999999999999999999999975
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=261.20 Aligned_cols=228 Identities=21% Similarity=0.278 Sum_probs=194.3
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..+++||++|||||++|||++++++|+++|++ |++++|+.++++.+.+.+.. +.++..++||++|.++++++++++.
T Consensus 4 ~~~l~gk~vlItGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~ 80 (296)
T PRK05872 4 MTSLAGKVVVVTGAARGIGAELARRLHARGAK--LALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAV 80 (296)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 34678999999999999999999999999987 99999998877665554432 3567788899999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|++|||+|... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++ | +||++||..+
T Consensus 81 ~~~g~id~vI~nAG~~~-------~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~-g------~iv~isS~~~ 146 (296)
T PRK05872 81 ERFGGIDVVVANAGIAS-------GGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERR-G------YVLQVSSLAA 146 (296)
T ss_pred HHcCCCCEEEECCCcCC-------CcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-C------EEEEEeCHhh
Confidence 99999999999999874 45667788899999999999999999999999987643 3 8999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC------------CCCCCCCCh
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN------------VPEGKLFTK 250 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~------------~~~~~~~~~ 250 (282)
..+ .++...|+++|++++.|+++++.|+++. +|++++++||+++|++.+..... .+.....+|
T Consensus 147 ~~~---~~~~~~Y~asKaal~~~~~~l~~e~~~~--gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 221 (296)
T PRK05872 147 FAA---APGMAAYCASKAGVEAFANALRLEVAHH--GVTVGSAYLSWIDTDLVRDADADLPAFRELRARLPWPLRRTTSV 221 (296)
T ss_pred cCC---CCCchHHHHHHHHHHHHHHHHHHHHHHH--CcEEEEEecCcccchhhhhccccchhHHHHHhhCCCcccCCCCH
Confidence 766 6677899999999999999999999988 89999999999999986643221 133456799
Q ss_pred HHHHHHHHHHHhhcCCCCCCce
Q 023441 251 EFSVQKLLNIINNIKSHDNGKF 272 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~ 272 (282)
+++++.+.+++......+++..
T Consensus 222 ~~va~~i~~~~~~~~~~i~~~~ 243 (296)
T PRK05872 222 EKCAAAFVDGIERRARRVYAPR 243 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEchH
Confidence 9999999999987776666553
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=252.56 Aligned_cols=238 Identities=24% Similarity=0.322 Sum_probs=204.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||+++||||+++||.+++++|+++|++ |++.+|+.+..+...+... .+.++.++++|++|+++++++++++.+
T Consensus 1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~~--v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~ 77 (252)
T PRK06138 1 MRLAGRVAIVTGAGSGIGRATAKLFAREGAR--VVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAA 77 (252)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHHCCCe--EEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999987 9999999876655444333 356789999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|++|||+|... ..+..+.+.++++..+++|+.+++.+.+.+.+.+++++.+ +++++||..+.
T Consensus 78 ~~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~ii~~sS~~~~ 144 (252)
T PRK06138 78 RWGRLDVLVNNAGFGC-------GGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGG------SIVNTASQLAL 144 (252)
T ss_pred HcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCe------EEEEECChhhc
Confidence 9999999999999864 4455667788999999999999999999999999876544 89999999877
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC--------------CCCCCCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN--------------VPEGKLFT 249 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~--------------~~~~~~~~ 249 (282)
.+ .++...|+.+|++++.+++.++.|+... ++++++++||++.|++..+.... .+...+.+
T Consensus 145 ~~---~~~~~~Y~~sK~a~~~~~~~l~~~~~~~--~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (252)
T PRK06138 145 AG---GRGRAAYVASKGAIASLTRAMALDHATD--GIRVNAVAPGTIDTPYFRRIFARHADPEALREALRARHPMNRFGT 219 (252)
T ss_pred cC---CCCccHHHHHHHHHHHHHHHHHHHHHhc--CeEEEEEEECCccCcchhhhhccccChHHHHHHHHhcCCCCCCcC
Confidence 66 4567889999999999999999999887 89999999999999986543211 12223568
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
++++++.+++++.......+|..+.+|+++..|
T Consensus 220 ~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~ 252 (252)
T PRK06138 220 AEEVAQAALFLASDESSFATGTTLVVDGGWLAA 252 (252)
T ss_pred HHHHHHHHHHHcCchhcCccCCEEEECCCeecC
Confidence 999999999999888889999999999999887
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=257.18 Aligned_cols=224 Identities=19% Similarity=0.243 Sum_probs=184.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.+|+++|||+ +|||+++|++|+ +|++ |++++|+.++++...+.+...+.++.++++|++|++++.++++++ ++++
T Consensus 1 ~~k~~lItGa-~gIG~~la~~l~-~G~~--Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~-~~~g 75 (275)
T PRK06940 1 MKEVVVVIGA-GGIGQAIARRVG-AGKK--VLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATA-QTLG 75 (275)
T ss_pred CCCEEEEECC-ChHHHHHHHHHh-CCCE--EEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH-HhcC
Confidence 3689999998 699999999996 8987 999999887666554444444568899999999999999999988 5689
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++|||||... . .++|++.+++|+.+++++++.+.|.|.+++ .++++||..+....
T Consensus 76 ~id~li~nAG~~~-------~-------~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g--------~iv~isS~~~~~~~ 133 (275)
T PRK06940 76 PVTGLVHTAGVSP-------S-------QASPEAILKVDLYGTALVLEEFGKVIAPGG--------AGVVIASQSGHRLP 133 (275)
T ss_pred CCCEEEECCCcCC-------c-------hhhHHHHHHHhhHHHHHHHHHHHHHHhhCC--------CEEEEEecccccCc
Confidence 9999999999752 1 256889999999999999999999997542 56888888776431
Q ss_pred C------------------------C---CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc
Q 023441 187 N------------------------R---LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ 239 (282)
Q Consensus 187 ~------------------------~---~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~ 239 (282)
. + .+++..|++||+++..++++++.|++++ +|+||+|+||+++|++.....
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~--gIrvn~i~PG~v~T~~~~~~~ 211 (275)
T PRK06940 134 ALTAEQERALATTPTEELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGER--GARINSISPGIISTPLAQDEL 211 (275)
T ss_pred ccchhhhccccccccccccccccccccccCCccchhHHHHHHHHHHHHHHHHHHccC--CeEEEEeccCcCcCccchhhh
Confidence 0 0 0246789999999999999999999988 899999999999999864311
Q ss_pred ------------cCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 240 ------------RNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 240 ------------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
...+..+..+|+++|+.+.+++++....++|+.+.+||+.
T Consensus 212 ~~~~~~~~~~~~~~~p~~r~~~peeia~~~~fL~s~~~~~itG~~i~vdgg~ 263 (275)
T PRK06940 212 NGPRGDGYRNMFAKSPAGRPGTPDEIAALAEFLMGPRGSFITGSDFLVDGGA 263 (275)
T ss_pred cCCchHHHHHHhhhCCcccCCCHHHHHHHHHHHcCcccCcccCceEEEcCCe
Confidence 1224456779999999999999988899999999999985
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=251.70 Aligned_cols=236 Identities=21% Similarity=0.285 Sum_probs=197.0
Q ss_pred ccccCcEEEEecCCC--chhHHHHHHHHhcCCCcEEEEeecCCC-----------cccccccccccCCCceeEEEeeCCC
Q 023441 24 VKWKGGVSLVQGASR--GIGLEFAKQLLEKNDKGCVIATCRNPN-----------GATGLLDLKNRFPERLDVLQLDLTV 90 (282)
Q Consensus 24 ~~~~gk~vlItGas~--giG~a~a~~la~~G~~~~vi~~~r~~~-----------~~~~~~~~~~~~~~~v~~~~~Dls~ 90 (282)
|+++||++|||||++ |||.+++++|+++|++ |++.+|++. ....+.+.....+.+++++++|+++
T Consensus 1 ~~l~~k~vlItGas~~~giG~~la~~l~~~G~~--vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 78 (256)
T PRK12748 1 LPLMKKIALVTGASRLNGIGAAVCRRLAAKGID--IFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQ 78 (256)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCc--EEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCC
Confidence 567899999999994 9999999999999988 899998722 1111223333445689999999999
Q ss_pred hhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccc
Q 023441 91 ESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERD 170 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~ 170 (282)
+++++++++++.++++++|++|||+|... ..+..+.+.+++++.+++|+.+++.+.+.+.+.|.++..+
T Consensus 79 ~~~~~~~~~~~~~~~g~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---- 147 (256)
T PRK12748 79 PYAPNRVFYAVSERLGDPSILINNAAYST-------HTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGG---- 147 (256)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCcCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCe----
Confidence 99999999999999999999999999864 4456667788899999999999999999999998765544
Q ss_pred eeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-----cccCCCCC
Q 023441 171 VAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-----FQRNVPEG 245 (282)
Q Consensus 171 ~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~-----~~~~~~~~ 245 (282)
+++++||..+..+ .++...|+++|++++.++++++.++... ++++++++||+++|++... .....+..
T Consensus 148 --~iv~~ss~~~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--~i~v~~i~Pg~~~t~~~~~~~~~~~~~~~~~~ 220 (256)
T PRK12748 148 --RIINLTSGQSLGP---MPDELAYAATKGAIEAFTKSLAPELAEK--GITVNAVNPGPTDTGWITEELKHHLVPKFPQG 220 (256)
T ss_pred --EEEEECCccccCC---CCCchHHHHHHHHHHHHHHHHHHHHHHh--CeEEEEEEeCcccCCCCChhHHHhhhccCCCC
Confidence 8999999877654 5567889999999999999999999877 8999999999999986542 12233445
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
...+|+++++.+.+++.+....++|.++.+|+++
T Consensus 221 ~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g~ 254 (256)
T PRK12748 221 RVGEPVDAARLIAFLVSEEAKWITGQVIHSEGGF 254 (256)
T ss_pred CCcCHHHHHHHHHHHhCcccccccCCEEEecCCc
Confidence 5678999999999999887788999999999874
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=251.62 Aligned_cols=213 Identities=18% Similarity=0.219 Sum_probs=179.1
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCC-ceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE-RLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~-~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
++++||||++|||+++|++|+ +|++ |++++|+.++++++.+.+.+.+. ++.+++||++|+++++++++++.+.+|+
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~--Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 77 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGED--VVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGE 77 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCE--EEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCC
Confidence 579999999999999999999 5877 99999998887766555544443 5889999999999999999999999999
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeeccccccCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
+|++|||+|... .....+.+.+.+.+.+++|+.+.+.+.+.+.|.|.+++ .| +||++||..+..+
T Consensus 78 id~lv~nag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g------~Iv~isS~~~~~~- 143 (246)
T PRK05599 78 ISLAVVAFGILG-------DQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPA------AIVAFSSIAGWRA- 143 (246)
T ss_pred CCEEEEecCcCC-------CchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCC------EEEEEeccccccC-
Confidence 999999999864 22333455667888899999999999999999997654 33 9999999988766
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhcC
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 265 (282)
.++...|+++|+++.+|+++++.|+.+. +|+|++++||+++|++.....+ .....+||++|+.+++++....
T Consensus 144 --~~~~~~Y~asKaa~~~~~~~la~el~~~--~I~v~~v~PG~v~T~~~~~~~~---~~~~~~pe~~a~~~~~~~~~~~ 215 (246)
T PRK05599 144 --RRANYVYGSTKAGLDAFCQGLADSLHGS--HVRLIIARPGFVIGSMTTGMKP---APMSVYPRDVAAAVVSAITSSK 215 (246)
T ss_pred --CcCCcchhhHHHHHHHHHHHHHHHhcCC--CceEEEecCCcccchhhcCCCC---CCCCCCHHHHHHHHHHHHhcCC
Confidence 5677899999999999999999999887 8999999999999998654332 1223589999999999998653
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=253.33 Aligned_cols=235 Identities=22% Similarity=0.331 Sum_probs=197.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||++|||||++|||+++|++|+++|++ |++.+|+++.. +..+.+...+.++.++++|++++++++++++++.+
T Consensus 3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~--v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAI--PVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVA 79 (258)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHcCCc--EEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999998 88889988765 33344444466899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||+|... ........ ++|+..+++|+.+++.+.+.+.|.++++. + +|+++||..+.
T Consensus 80 ~~~~id~vi~~ag~~~-------~~~~~~~~-~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~------~iv~~ss~~~~ 144 (258)
T PRK08628 80 KFGRIDGLVNNAGVND-------GVGLEAGR-EAFVASLERNLIHYYVMAHYCLPHLKASR-G------AIVNISSKTAL 144 (258)
T ss_pred hcCCCCEEEECCcccC-------CCcccCCH-HHHHHHHhhhhHHHHHHHHHHHHHhhccC-c------EEEEECCHHhc
Confidence 9999999999999753 23333334 88999999999999999999999887543 2 89999998887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------------CCCC-CCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------------NVPE-GKLF 248 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------------~~~~-~~~~ 248 (282)
.+ .+....|+++|++++.++++++.|+.+. +|++++|+||.++|++...... ..+. ....
T Consensus 145 ~~---~~~~~~Y~~sK~a~~~~~~~l~~e~~~~--~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (258)
T PRK08628 145 TG---QGGTSGYAAAKGAQLALTREWAVALAKD--GVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKIPLGHRMT 219 (258)
T ss_pred cC---CCCCchhHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcCCccccCC
Confidence 65 5667899999999999999999999877 8999999999999997542110 1122 2567
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
+|+++++.+++++.+.....+|+.+.+||++..
T Consensus 220 ~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~~~ 252 (258)
T PRK08628 220 TAEEIADTAVFLLSERSSHTTGQWLFVDGGYVH 252 (258)
T ss_pred CHHHHHHHHHHHhChhhccccCceEEecCCccc
Confidence 899999999999998888999999999998753
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=253.01 Aligned_cols=221 Identities=11% Similarity=0.102 Sum_probs=184.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||+++||||++|||++++++|+++|++ |++.+|+.+++++..+.+.+.+.++..+++|++|+++++++++++.+
T Consensus 1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~~--V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (227)
T PRK08862 1 MDIKSSIILITSAGSVLGRTISCHFARLGAT--LILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQ 78 (227)
T ss_pred CCCCCeEEEEECCccHHHHHHHHHHHHCCCE--EEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999988 99999999887776555555566788999999999999999999999
Q ss_pred HcC-CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeeccc
Q 023441 104 KYG-SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARV 181 (282)
Q Consensus 104 ~~~-~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~~ 181 (282)
+++ ++|++|||+|... ...++.+.+.++|.+.+++|+.+++.+++.+.|+|.+++ .| .||++||..
T Consensus 79 ~~g~~iD~li~nag~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g------~Iv~isS~~ 146 (227)
T PRK08862 79 QFNRAPDVLVNNWTSSP------LPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKG------VIVNVISHD 146 (227)
T ss_pred HhCCCCCEEEECCccCC------CCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCc------eEEEEecCC
Confidence 999 9999999998653 234566778889999999999999999999999998654 33 899999965
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCCh-HHHHHHHHHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTK-EFSVQKLLNI 260 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~-~~~a~~~~~~ 260 (282)
+. +++..|+++|+++.+|+++++.|++++ +|+||+|+||+++|+.... +. .+... ++++.++.++
T Consensus 147 ~~------~~~~~Y~asKaal~~~~~~la~el~~~--~Irvn~v~PG~i~t~~~~~-----~~-~~~~~~~~~~~~~~~l 212 (227)
T PRK08862 147 DH------QDLTGVESSNALVSGFTHSWAKELTPF--NIRVGGVVPSIFSANGELD-----AV-HWAEIQDELIRNTEYI 212 (227)
T ss_pred CC------CCcchhHHHHHHHHHHHHHHHHHHhhc--CcEEEEEecCcCcCCCccC-----HH-HHHHHHHHHHhheeEE
Confidence 43 346789999999999999999999988 8999999999999983111 10 11122 7888888888
Q ss_pred HhhcCCCCCCceee
Q 023441 261 INNIKSHDNGKFFA 274 (282)
Q Consensus 261 ~~~~~~~~~g~~~~ 274 (282)
++ .+.++|+.+.
T Consensus 213 ~~--~~~~tg~~~~ 224 (227)
T PRK08862 213 VA--NEYFSGRVVE 224 (227)
T ss_pred Ee--cccccceEEe
Confidence 86 5688888765
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=253.45 Aligned_cols=236 Identities=22% Similarity=0.271 Sum_probs=196.0
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.+++|+++||||++|||++++++|+++|++ |++++|+... ....+.....+.++.++++|++++++++++++++.++
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~--Vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 79 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGAN--LILLDISPEI-EKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEK 79 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEecCCHHH-HHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999988 9999998642 2222222233457889999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|++|||+|... ..+..+.+.+.+++.+++|+.+++.+++.+.+.+.+++.+ ++|++||..+..
T Consensus 80 ~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~iv~isS~~~~~ 146 (263)
T PRK08226 80 EGRIDILVNNAGVCR-------LGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDG------RIVMMSSVTGDM 146 (263)
T ss_pred cCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc------EEEEECcHHhcc
Confidence 999999999999864 4455666778899999999999999999999988765443 899999977632
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------------cCCCCCCCC
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------------RNVPEGKLF 248 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------------~~~~~~~~~ 248 (282)
. +.+++..|+++|+++++++++++.++.+. +|+|++|+||+++|++.+... ...|..+..
T Consensus 147 ~--~~~~~~~Y~~sK~a~~~~~~~la~~~~~~--~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 222 (263)
T PRK08226 147 V--ADPGETAYALTKAAIVGLTKSLAVEYAQS--GIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPLRRLA 222 (263)
T ss_pred c--CCCCcchHHHHHHHHHHHHHHHHHHhccc--CcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCCCCCCC
Confidence 2 14567789999999999999999999887 899999999999999754321 112344567
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+++++.+.+++++....++|+.+.+||+..
T Consensus 223 ~~~~va~~~~~l~~~~~~~~~g~~i~~dgg~~ 254 (263)
T PRK08226 223 DPLEVGELAAFLASDESSYLTGTQNVIDGGST 254 (263)
T ss_pred CHHHHHHHHHHHcCchhcCCcCceEeECCCcc
Confidence 99999999999998878899999999999853
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=253.08 Aligned_cols=237 Identities=18% Similarity=0.256 Sum_probs=201.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|.+++|+++||||++|||+++|++|+++|++ |++++|++++.+...+.....+.++.++.+|++|+++++++++++.+
T Consensus 1 ~~l~~k~vlItGa~~~IG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (258)
T PRK07890 1 MLLKGKVVVVSGVGPGLGRTLAVRAARAGAD--VVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALE 78 (258)
T ss_pred CccCCCEEEEECCCCcHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999987 99999998776665555544456789999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|++|||+|... +..+..+.+.+++++.+++|+.+++.+++.+.+.+.+++ + +||++||..+.
T Consensus 79 ~~g~~d~vi~~ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~------~ii~~sS~~~~ 145 (258)
T PRK07890 79 RFGRVDALVNNAFRVP------SMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESG-G------SIVMINSMVLR 145 (258)
T ss_pred HcCCccEEEECCccCC------CCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC-C------EEEEEechhhc
Confidence 9999999999999763 124556677899999999999999999999999987653 2 89999998876
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------------ccCCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------------QRNVPE 244 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------------~~~~~~ 244 (282)
.+ .++...|+++|++++.++++++.++++. +|++++++||++.|++...+ .+..+.
T Consensus 146 ~~---~~~~~~Y~~sK~a~~~l~~~~a~~~~~~--~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (258)
T PRK07890 146 HS---QPKYGAYKMAKGALLAASQSLATELGPQ--GIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAANSDL 220 (258)
T ss_pred cC---CCCcchhHHHHHHHHHHHHHHHHHHhhc--CcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhcCCc
Confidence 55 5677899999999999999999999988 89999999999999865321 112233
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 245 GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
....+|+++++++.++++.....++|+.+.+|++++
T Consensus 221 ~~~~~~~dva~a~~~l~~~~~~~~~G~~i~~~gg~~ 256 (258)
T PRK07890 221 KRLPTDDEVASAVLFLASDLARAITGQTLDVNCGEY 256 (258)
T ss_pred cccCCHHHHHHHHHHHcCHhhhCccCcEEEeCCccc
Confidence 456689999999999998777799999999999875
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=235.00 Aligned_cols=239 Identities=40% Similarity=0.624 Sum_probs=201.4
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH--cC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK--YG 106 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~--~~ 106 (282)
|.|+||||+.|||+.++++|.+.-...+++..+|+++.+....++......+++.+++|+++.+++..+++++.+- ..
T Consensus 4 ksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~~ 83 (249)
T KOG1611|consen 4 KSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGSD 83 (249)
T ss_pred ccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcccC
Confidence 5699999999999999999998643335777788888763333443444679999999999999999999999987 45
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCC-----CCccceeEEEEeeccc
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGT-----GIERDVAVVANLSARV 181 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~-----g~~~~~~~iv~~ss~~ 181 (282)
.+|+|++|||+.. +..+..+.+.+.|-+.+++|..|+..+.|.|+|.+++..+ +.-.+-..|||+||.+
T Consensus 84 GlnlLinNaGi~~------~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~ 157 (249)
T KOG1611|consen 84 GLNLLINNAGIAL------SYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSA 157 (249)
T ss_pred CceEEEeccceee------ecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccc
Confidence 7999999999985 4555566667789999999999999999999999986532 1122234799999999
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 261 (282)
+..+.....+..+|.+||+|++.|+|+++.|+.+. +|-|..+|||||.|+|... ...+++|+.+..++..+
T Consensus 158 ~s~~~~~~~~~~AYrmSKaAlN~f~ksls~dL~~~--~ilv~sihPGwV~TDMgg~-------~a~ltveeSts~l~~~i 228 (249)
T KOG1611|consen 158 GSIGGFRPGGLSAYRMSKAALNMFAKSLSVDLKDD--HILVVSIHPGWVQTDMGGK-------KAALTVEESTSKLLASI 228 (249)
T ss_pred cccCCCCCcchhhhHhhHHHHHHHHHHhhhhhcCC--cEEEEEecCCeEEcCCCCC-------CcccchhhhHHHHHHHH
Confidence 88776556778999999999999999999999977 9999999999999999663 33469999999999999
Q ss_pred hhcCCCCCCceeecCCcccCC
Q 023441 262 NNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 262 ~~~~~~~~g~~~~~d~~~~~~ 282 (282)
....+..+|.||..|+..+||
T Consensus 229 ~kL~~~hnG~ffn~dlt~ipf 249 (249)
T KOG1611|consen 229 NKLKNEHNGGFFNRDGTPIPF 249 (249)
T ss_pred HhcCcccCcceEccCCCcCCC
Confidence 999999999999999999998
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=249.97 Aligned_cols=243 Identities=23% Similarity=0.331 Sum_probs=204.5
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..+++||+++||||+++||++++++|+++|++ |++++|+.++++.+...+...+.+++++.+|+++.++++++++++.
T Consensus 4 ~~~~~~k~ilItGasg~IG~~~a~~l~~~G~~--Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (258)
T PRK06949 4 SINLEGKVALVTGASSGLGARFAQVLAQAGAK--VVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 34588999999999999999999999999987 9999999887666555544445678999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCC--CccceeEEEEeecc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTG--IERDVAVVANLSAR 180 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g--~~~~~~~iv~~ss~ 180 (282)
+.++++|++|||+|... ..+..+.+.++++.++++|+.+++.+++.+.+.+..+..+ .....+.++++||.
T Consensus 82 ~~~~~~d~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~ 154 (258)
T PRK06949 82 TEAGTIDILVNNSGVST-------TQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASV 154 (258)
T ss_pred HhcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcc
Confidence 99999999999999864 3445566678899999999999999999999998765431 11123589999998
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCChH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFTKE 251 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~~~ 251 (282)
.+..+ .+....|+++|++++.++++++.++.+. ++++++|+||+++|++.+.. .+..+......|+
T Consensus 155 ~~~~~---~~~~~~Y~~sK~a~~~~~~~la~~~~~~--~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 229 (258)
T PRK06949 155 AGLRV---LPQIGLYCMSKAAVVHMTRAMALEWGRH--GINVNAICPGYIDTEINHHHWETEQGQKLVSMLPRKRVGKPE 229 (258)
T ss_pred cccCC---CCCccHHHHHHHHHHHHHHHHHHHHHhc--CeEEEEEeeCCCcCCcchhccChHHHHHHHhcCCCCCCcCHH
Confidence 87655 5667889999999999999999999887 89999999999999986532 1123456677899
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++++.+.+++++....++|+.+.+||++
T Consensus 230 ~~~~~~~~l~~~~~~~~~G~~i~~dgg~ 257 (258)
T PRK06949 230 DLDGLLLLLAADESQFINGAIISADDGF 257 (258)
T ss_pred HHHHHHHHHhChhhcCCCCcEEEeCCCC
Confidence 9999999999988899999999999975
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=249.76 Aligned_cols=235 Identities=23% Similarity=0.305 Sum_probs=199.0
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEE-eecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIA-TCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~-~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+.||+++||||+++||++++++|+++|++ |++ ..|+.++.+.+.+.+...+.++.++.+|++|++++.++++++.+.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~--v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYD--IAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEE 79 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999999987 554 578876665555555555668999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|++|||+|... ..+..+.+.+.++..+++|+.+++.+++++.+.+.+++.| +||++||..+..
T Consensus 80 ~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g------~iv~~sS~~~~~ 146 (250)
T PRK08063 80 FGRLDVFVNNAASGV-------LRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGG------KIISLSSLGSIR 146 (250)
T ss_pred cCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCe------EEEEEcchhhcc
Confidence 999999999999864 4566677788999999999999999999999999876654 999999987665
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------CCCCCCCCChHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------NVPEGKLFTKEFSV 254 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------~~~~~~~~~~~~~a 254 (282)
+ .+....|+++|++++.|+++++.++.+. +|++++|+||++.|++...+.. ..+.....++++++
T Consensus 147 ~---~~~~~~y~~sK~a~~~~~~~~~~~~~~~--~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva 221 (250)
T PRK08063 147 Y---LENYTTVGVSKAALEALTRYLAVELAPK--GIAVNAVSGGAVDTDALKHFPNREELLEDARAKTPAGRMVEPEDVA 221 (250)
T ss_pred C---CCCccHHHHHHHHHHHHHHHHHHHHhHh--CeEEEeEecCcccCchhhhccCchHHHHHHhcCCCCCCCcCHHHHH
Confidence 5 4567799999999999999999999887 8999999999999987653221 12334567899999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCccc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.+++++++.....+|+.+.+||+..
T Consensus 222 ~~~~~~~~~~~~~~~g~~~~~~gg~~ 247 (250)
T PRK08063 222 NAVLFLCSPEADMIRGQTIIVDGGRS 247 (250)
T ss_pred HHHHHHcCchhcCccCCEEEECCCee
Confidence 99999998777789999999998753
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=253.84 Aligned_cols=236 Identities=20% Similarity=0.243 Sum_probs=200.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc-ccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG-ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~-~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+++||++|||||++|||.+++++|+++|++ |++++|+... .+...+.+...+.++.++.+|++|.+++.++++++.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~--V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~ 119 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGAD--IAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETV 119 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 6788999999999999999999999999988 8999998643 333444444445689999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|++|||+|... ......+.+.++|.+.+++|+.+++.+++.+.+.|++. + ++|++||..+
T Consensus 120 ~~~~~iD~lI~~Ag~~~------~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~--g------~iV~isS~~~ 185 (290)
T PRK06701 120 RELGRLDILVNNAAFQY------PQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQG--S------AIINTGSITG 185 (290)
T ss_pred HHcCCCCEEEECCcccC------CCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhC--C------eEEEEecccc
Confidence 99999999999999863 13445667788999999999999999999999988643 2 8999999887
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCChHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFTKEFS 253 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~~~~~ 253 (282)
..+ .+....|+++|++++.++++++.++.+. +|++++|+||+++|++.... ....+.....+|+++
T Consensus 186 ~~~---~~~~~~Y~~sK~a~~~l~~~la~~~~~~--gIrv~~i~pG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 260 (290)
T PRK06701 186 YEG---NETLIDYSATKGAIHAFTRSLAQSLVQK--GIRVNAVAPGPIWTPLIPSDFDEEKVSQFGSNTPMQRPGQPEEL 260 (290)
T ss_pred cCC---CCCcchhHHHHHHHHHHHHHHHHHhhhc--CeEEEEEecCCCCCcccccccCHHHHHHHHhcCCcCCCcCHHHH
Confidence 765 4566789999999999999999999987 89999999999999975421 123345667889999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+.+++++++....++|..+.+||+..
T Consensus 261 a~~~~~ll~~~~~~~~G~~i~idgg~~ 287 (290)
T PRK06701 261 APAYVFLASPDSSYITGQMLHVNGGVI 287 (290)
T ss_pred HHHHHHHcCcccCCccCcEEEeCCCcc
Confidence 999999999888899999999999854
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=249.06 Aligned_cols=235 Identities=20% Similarity=0.261 Sum_probs=197.4
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEe-ecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT-CRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~-~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++||+++||||++|||+++|++|+++|++ |++. .++....+...+.+...+.++.++.+|++|.+++.++++++.+.
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~--vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFK--VVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAE 78 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCE--EEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999987 6654 44444433333433444567889999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|++|||+|... ..+..+.+.++|++.+++|+.+++.+.+.+.+.+.+++.+ +|+++||..+..
T Consensus 79 ~~~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~iv~isS~~~~~ 145 (246)
T PRK12938 79 VGEIDVLVNNAGITR-------DVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWG------RIINISSVNGQK 145 (246)
T ss_pred hCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCe------EEEEEechhccC
Confidence 999999999999864 3456677889999999999999999999999999876554 899999988776
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------CCCCCCCCChHHHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------NVPEGKLFTKEFSVQK 256 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~~~~~~~~~~~~~a~~ 256 (282)
+ .++...|+++|++++.++++++.++.+. ++++++|+||+++|++.+...+ ..+.....+|+++++.
T Consensus 146 ~---~~~~~~y~~sK~a~~~~~~~l~~~~~~~--gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (246)
T PRK12938 146 G---QFGQTNYSTAKAGIHGFTMSLAQEVATK--GVTVNTVSPGYIGTDMVKAIRPDVLEKIVATIPVRRLGSPDEIGSI 220 (246)
T ss_pred C---CCCChhHHHHHHHHHHHHHHHHHHhhhh--CeEEEEEEecccCCchhhhcChHHHHHHHhcCCccCCcCHHHHHHH
Confidence 5 5677899999999999999999999887 8999999999999998654321 2344566799999999
Q ss_pred HHHHHhhcCCCCCCceeecCCccc
Q 023441 257 LLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 257 ~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++++++....++|+.+.+|+++.
T Consensus 221 ~~~l~~~~~~~~~g~~~~~~~g~~ 244 (246)
T PRK12938 221 VAWLASEESGFSTGADFSLNGGLH 244 (246)
T ss_pred HHHHcCcccCCccCcEEEECCccc
Confidence 999998877899999999999853
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=253.60 Aligned_cols=221 Identities=17% Similarity=0.226 Sum_probs=187.9
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.++||++|||||++|||+++|++|+++|++ |++.+|+.+.++...+.+...+.++.++++|++|++++.++++++.++
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~--Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGAR--VVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999988 899999987776655555444567899999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|++|||||... ..+..+.+.+.|+..+++|+.+++.+++.+.|.|.+++.+ ++||++||..+..
T Consensus 81 ~g~id~li~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~-----g~iv~isS~~~~~ 148 (275)
T PRK05876 81 LGHVDVVFSNAGIVV-------GGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTG-----GHVVFTASFAGLV 148 (275)
T ss_pred cCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC-----CEEEEeCChhhcc
Confidence 999999999999874 4566778889999999999999999999999999776522 3899999998876
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------------CCC-CCCC
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------------NVP-EGKL 247 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------------~~~-~~~~ 247 (282)
+ .++...|+++|+++.+|+++++.|++++ +|++++++||+++|++...... ..+ ....
T Consensus 149 ~---~~~~~~Y~asK~a~~~~~~~l~~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (275)
T PRK05876 149 P---NAGLGAYGVAKYGVVGLAETLAREVTAD--GIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPLQDDN 223 (275)
T ss_pred C---CCCCchHHHHHHHHHHHHHHHHHHhhhc--CcEEEEEEeCccccccccchhhhcCccccccccccccccccccccC
Confidence 6 5677899999999999999999999887 8999999999999997643210 001 1235
Q ss_pred CChHHHHHHHHHHHhhc
Q 023441 248 FTKEFSVQKLLNIINNI 264 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~ 264 (282)
.+|+++|+.++..+...
T Consensus 224 ~~~~dva~~~~~ai~~~ 240 (275)
T PRK05876 224 LGVDDIAQLTADAILAN 240 (275)
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 79999999999988754
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=248.64 Aligned_cols=240 Identities=20% Similarity=0.267 Sum_probs=194.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC-CCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN-PNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~-~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|.+++|++|||||++|||++++++|+++|++ |++..++ .+..+.+.. ..+.++.++++|++|+++++++++++.
T Consensus 1 ~~l~~k~ilItGas~gIG~~la~~l~~~G~~--vv~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (253)
T PRK08642 1 MQISEQTVLVTGGSRGLGAAIARAFAREGAR--VVVNYHQSEDAAEALAD---ELGDRAIALQADVTDREQVQAMFATAT 75 (253)
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHHHHCCCe--EEEEcCCCHHHHHHHHH---HhCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999999999998 7766553 333322222 223578899999999999999999999
Q ss_pred HHcCC-ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 103 EKYGS-LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 103 ~~~~~-id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
+.+++ +|++|||+|....... ....+..+.+.+++++.+++|+.+++.+++.+.+.|.+++.| +|+++||..
T Consensus 76 ~~~g~~id~li~~ag~~~~~~~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g------~iv~iss~~ 148 (253)
T PRK08642 76 EHFGKPITTVVNNALADFSFDG-DARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFG------RIINIGTNL 148 (253)
T ss_pred HHhCCCCeEEEECCCccccccc-cCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCe------EEEEECCcc
Confidence 99987 9999999987421000 012345677788999999999999999999999998766554 899999976
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCChHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFTKEF 252 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~~~~ 252 (282)
+..+ ..++..|+++|++++.+++++++++++. +|+||+|+||+++|+..... ....+.....+|++
T Consensus 149 ~~~~---~~~~~~Y~~sK~a~~~l~~~la~~~~~~--~i~v~~i~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (253)
T PRK08642 149 FQNP---VVPYHDYTTAKAALLGLTRNLAAELGPY--GITVNMVSGGLLRTTDASAATPDEVFDLIAATTPLRKVTTPQE 223 (253)
T ss_pred ccCC---CCCccchHHHHHHHHHHHHHHHHHhCcc--CeEEEEEeecccCCchhhccCCHHHHHHHHhcCCcCCCCCHHH
Confidence 5433 4556789999999999999999999988 89999999999999754321 12234566789999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++..+.+++++....++|+.+.+||++.
T Consensus 224 va~~~~~l~~~~~~~~~G~~~~vdgg~~ 251 (253)
T PRK08642 224 FADAVLFFASPWARAVTGQNLVVDGGLV 251 (253)
T ss_pred HHHHHHHHcCchhcCccCCEEEeCCCee
Confidence 9999999999888899999999999864
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=245.50 Aligned_cols=228 Identities=19% Similarity=0.179 Sum_probs=186.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.+|++|||||++|||++++++|+++|++ |++++|+.++... .+... .+.++.+|++|+++++++++++.+.++
T Consensus 1 ~~k~vlItGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~---~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 73 (236)
T PRK06483 1 MPAPILITGAGQRIGLALAWHLLAQGQP--VIVSYRTHYPAID---GLRQA--GAQCIQADFSTNAGIMAFIDELKQHTD 73 (236)
T ss_pred CCceEEEECCCChHHHHHHHHHHHCCCe--EEEEeCCchhHHH---HHHHc--CCEEEEcCCCCHHHHHHHHHHHHhhCC
Confidence 3689999999999999999999999998 9999998764322 11111 367899999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++|||+|... .....+.+.++|++.+++|+.+++.+++.+.|.|.+++.+ .+.||++||..+..+
T Consensus 74 ~id~lv~~ag~~~-------~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~----~g~iv~~ss~~~~~~- 141 (236)
T PRK06483 74 GLRAIIHNASDWL-------AEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHA----ASDIIHITDYVVEKG- 141 (236)
T ss_pred CccEEEECCcccc-------CCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCC----CceEEEEcchhhccC-
Confidence 9999999999763 2223455678999999999999999999999999875410 138999999877655
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc------cccCCCCCCCCChHHHHHHHHHH
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------FQRNVPEGKLFTKEFSVQKLLNI 260 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~------~~~~~~~~~~~~~~~~a~~~~~~ 260 (282)
.+++..|+++|+++++|+++++.|+++ +|++|+|+||++.|+.... .....+......|+++++.+.++
T Consensus 142 --~~~~~~Y~asKaal~~l~~~~a~e~~~---~irvn~v~Pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l 216 (236)
T PRK06483 142 --SDKHIAYAASKAALDNMTLSFAAKLAP---EVKVNSIAPALILFNEGDDAAYRQKALAKSLLKIEPGEEEIIDLVDYL 216 (236)
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHCC---CcEEEEEccCceecCCCCCHHHHHHHhccCccccCCCHHHHHHHHHHH
Confidence 567789999999999999999999976 5999999999997764321 11123445567899999999999
Q ss_pred HhhcCCCCCCceeecCCccc
Q 023441 261 INNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 261 ~~~~~~~~~g~~~~~d~~~~ 280 (282)
++ ...++|+.+.+||+..
T Consensus 217 ~~--~~~~~G~~i~vdgg~~ 234 (236)
T PRK06483 217 LT--SCYVTGRSLPVDGGRH 234 (236)
T ss_pred hc--CCCcCCcEEEeCcccc
Confidence 96 5789999999999864
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=247.33 Aligned_cols=236 Identities=22% Similarity=0.308 Sum_probs=203.0
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++++|+++||||+++||++++++|+++|++ |++++|++++.+...+.+...+.++.++++|++|+++++++++++.++
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGAT--VAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999987 888899887766554444444568999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|++|||+|... ..+..+.+.+.+++.+++|+.+++.+.+.+.+.+.+++.| ++|++||..+..
T Consensus 82 ~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g------~iv~isS~~~~~ 148 (250)
T PRK12939 82 LGGLDGLVNNAGITN-------SKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRG------RIVNLASDTALW 148 (250)
T ss_pred cCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCe------EEEEECchhhcc
Confidence 999999999999875 4556677788999999999999999999999998876654 999999988776
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---------CCCCCCCCChHHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR---------NVPEGKLFTKEFSVQ 255 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---------~~~~~~~~~~~~~a~ 255 (282)
+ .+....|+++|++++.+++.++.++.+. +|++++|+||+++|++...... ..+.....+|+++++
T Consensus 149 ~---~~~~~~y~~sK~~~~~~~~~l~~~~~~~--~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~ 223 (250)
T PRK12939 149 G---APKLGAYVASKGAVIGMTRSLARELGGR--GITVNAIAPGLTATEATAYVPADERHAYYLKGRALERLQVPDDVAG 223 (250)
T ss_pred C---CCCcchHHHHHHHHHHHHHHHHHHHhhh--CEEEEEEEECCCCCccccccCChHHHHHHHhcCCCCCCCCHHHHHH
Confidence 6 5566789999999999999999999877 8999999999999998654322 234556789999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCccc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+.+++......++|+.+.+||+..
T Consensus 224 ~~~~l~~~~~~~~~G~~i~~~gg~~ 248 (250)
T PRK12939 224 AVLFLLSDAARFVTGQLLPVNGGFV 248 (250)
T ss_pred HHHHHhCccccCccCcEEEECCCcc
Confidence 9999998777789999999999853
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=251.54 Aligned_cols=236 Identities=18% Similarity=0.252 Sum_probs=198.4
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.|++++|+++||||++|||.+++++|+++|++ |++++|+.+..+...+.+...+.++.++++|++|+++++++++++.
T Consensus 4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGAN--VAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999988 9999998776655444444445578899999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+.++++|++|||+|... ..+..+.+.+++++.+++|+.+++++++.+.|.+.+++ | +|+++||..+
T Consensus 82 ~~~~~iD~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~-g------~iv~iss~~~ 147 (264)
T PRK07576 82 DEFGPIDVLVSGAAGNF-------PAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPG-A------SIIQISAPQA 147 (264)
T ss_pred HHcCCCCEEEECCCCCC-------CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-C------EEEEECChhh
Confidence 99999999999998653 34455677889999999999999999999999987543 3 8999999887
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEeccccc-CCCCccc----------ccCCCCCCCCChH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVD-TDLSRPF----------QRNVPEGKLFTKE 251 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~-t~~~~~~----------~~~~~~~~~~~~~ 251 (282)
..+ .+....|+++|++++.|+++++.|+.+. +|++++++||+++ |+..... ....+..+...|+
T Consensus 148 ~~~---~~~~~~Y~asK~a~~~l~~~la~e~~~~--gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (264)
T PRK07576 148 FVP---MPMQAHVCAAKAGVDMLTRTLALEWGPE--GIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQSVPLKRNGTKQ 222 (264)
T ss_pred ccC---CCCccHHHHHHHHHHHHHHHHHHHhhhc--CeEEEEEecccccCcHHHhhcccCHHHHHHHHhcCCCCCCCCHH
Confidence 655 5677899999999999999999999887 8999999999996 5532211 1123345567899
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++++.+++++++....++|..+.+||++
T Consensus 223 dva~~~~~l~~~~~~~~~G~~~~~~gg~ 250 (264)
T PRK07576 223 DIANAALFLASDMASYITGVVLPVDGGW 250 (264)
T ss_pred HHHHHHHHHcChhhcCccCCEEEECCCc
Confidence 9999999999877788999999999986
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=248.09 Aligned_cols=237 Identities=24% Similarity=0.343 Sum_probs=196.7
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
....+++||+++||||+++||+++|++|+++|++ |++++|+..+.+...+. .+.++.++++|++|.+++++++++
T Consensus 3 ~~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~--v~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (255)
T PRK05717 3 EPNPGHNGRVALVTGAARGIGLGIAAWLIAEGWQ--VVLADLDRERGSKVAKA---LGENAWFIAMDVADEAQVAAGVAE 77 (255)
T ss_pred CCCcccCCCEEEEeCCcchHHHHHHHHHHHcCCE--EEEEcCCHHHHHHHHHH---cCCceEEEEccCCCHHHHHHHHHH
Confidence 3457789999999999999999999999999987 88888887654433222 245788999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.++++++|++|||+|.... ...+..+.+.++|+..+++|+.+++.+++.+.|.|.+++ | +||++||.
T Consensus 78 ~~~~~g~id~li~~ag~~~~-----~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-g------~ii~~sS~ 145 (255)
T PRK05717 78 VLGQFGRLDALVCNAAIADP-----HNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHN-G------AIVNLAST 145 (255)
T ss_pred HHHHhCCCCEEEECCCcccC-----CCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-c------EEEEEcch
Confidence 99999999999999998641 123556677889999999999999999999999987543 2 89999998
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCChH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFTKE 251 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~~~ 251 (282)
.+..+ .+....|+++|++++.++++++.++.. ++++++++||+++|++.... ....+..+..+|+
T Consensus 146 ~~~~~---~~~~~~Y~~sKaa~~~~~~~la~~~~~---~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (255)
T PRK05717 146 RARQS---EPDTEAYAASKGGLLALTHALAISLGP---EIRVNAVSPGWIDARDPSQRRAEPLSEADHAQHPAGRVGTVE 219 (255)
T ss_pred hhcCC---CCCCcchHHHHHHHHHHHHHHHHHhcC---CCEEEEEecccCcCCccccccchHHHHHHhhcCCCCCCcCHH
Confidence 88766 456678999999999999999999875 59999999999999874321 1123445667899
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++++.+.++++.....++|+.+.+||+..
T Consensus 220 ~va~~~~~l~~~~~~~~~g~~~~~~gg~~ 248 (255)
T PRK05717 220 DVAAMVAWLLSRQAGFVTGQEFVVDGGMT 248 (255)
T ss_pred HHHHHHHHHcCchhcCccCcEEEECCCce
Confidence 99999999998777789999999998753
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=259.25 Aligned_cols=223 Identities=17% Similarity=0.211 Sum_probs=193.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.++++|+++||||++|||++++++|+++|++ |++++|+.+.++...+.+...+.++.++++|++|+++++++++.+.+
T Consensus 4 ~~l~~k~vlITGas~gIG~~la~~la~~G~~--Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 4 KPIGRQVVVITGASAGVGRATARAFARRGAK--VVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 4578899999999999999999999999987 99999998877666665555677899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|++|||+|... ..+..+.+.+++++.+++|+.+.+.+++.+.+.|.+++.| +||++||..+.
T Consensus 82 ~~g~iD~lInnAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g------~iV~isS~~~~ 148 (334)
T PRK07109 82 ELGPIDTWVNNAMVTV-------FGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRG------AIIQVGSALAY 148 (334)
T ss_pred HCCCCCEEEECCCcCC-------CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------EEEEeCChhhc
Confidence 9999999999999864 4566778889999999999999999999999999887554 99999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-----CCCCCCCCChHHHHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-----NVPEGKLFTKEFSVQKLL 258 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-----~~~~~~~~~~~~~a~~~~ 258 (282)
.+ .+....|+++|+++.+|+++++.|+...+.+|++++|+||.++|++.+.... ..+.....+|+++|+.++
T Consensus 149 ~~---~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~pe~vA~~i~ 225 (334)
T PRK07109 149 RS---IPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDWARSRLPVEPQPVPPIYQPEVVADAIL 225 (334)
T ss_pred cC---CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhhhhhhccccccCCCCCCCHHHHHHHHH
Confidence 66 5677899999999999999999999876568999999999999997653211 122345679999999999
Q ss_pred HHHhhc
Q 023441 259 NIINNI 264 (282)
Q Consensus 259 ~~~~~~ 264 (282)
++++..
T Consensus 226 ~~~~~~ 231 (334)
T PRK07109 226 YAAEHP 231 (334)
T ss_pred HHHhCC
Confidence 999864
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=249.28 Aligned_cols=235 Identities=21% Similarity=0.280 Sum_probs=199.4
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||++|||||++|||.+++++|+++|++ |++++|+.+..+...+.+...+.++.++.+|+++++++.++++++.+
T Consensus 6 ~~~~~~~vlItGasggIG~~~a~~l~~~G~~--Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (263)
T PRK07814 6 FRLDDQVAVVTGAGRGLGAAIALAFAEAGAD--VLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVE 83 (263)
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999987 99999998766655444444456889999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcC-CCCCccceeEEEEeecccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVG-GTGIERDVAVVANLSARVG 182 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~-~~g~~~~~~~iv~~ss~~~ 182 (282)
.++++|++|||||... .....+.+.++++..+++|+.+++.+.+.+.+.|.+. +. ++++++||..+
T Consensus 84 ~~~~id~vi~~Ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------g~iv~~sS~~~ 150 (263)
T PRK07814 84 AFGRLDIVVNNVGGTM-------PNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGG------GSVINISSTMG 150 (263)
T ss_pred HcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCC------eEEEEEccccc
Confidence 9999999999999764 3455667788999999999999999999999998763 33 38999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~ 252 (282)
..+ .++...|+++|++++.++++++.|+.+ +|++++|+||++.|++..... ...+.....+|++
T Consensus 151 ~~~---~~~~~~Y~~sK~a~~~~~~~~~~e~~~---~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (263)
T PRK07814 151 RLA---GRGFAAYGTAKAALAHYTRLAALDLCP---RIRVNAIAPGSILTSALEVVAANDELRAPMEKATPLRRLGDPED 224 (263)
T ss_pred cCC---CCCCchhHHHHHHHHHHHHHHHHHHCC---CceEEEEEeCCCcCchhhhccCCHHHHHHHHhcCCCCCCcCHHH
Confidence 766 566789999999999999999999864 599999999999998754221 1223344568999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+|+.+++++++.....+|..+.+|++.
T Consensus 225 va~~~~~l~~~~~~~~~g~~~~~~~~~ 251 (263)
T PRK07814 225 IAAAAVYLASPAGSYLTGKTLEVDGGL 251 (263)
T ss_pred HHHHHHHHcCccccCcCCCEEEECCCc
Confidence 999999999887789999999999874
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=245.33 Aligned_cols=234 Identities=23% Similarity=0.290 Sum_probs=197.1
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc-ccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG-ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~-~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|++++|+++||||++|||++++++|+++|++ |+++.|+.+. .+...+.+...+.++.++++|+++.++++++++++.
T Consensus 1 ~~~~~~~vlItG~~~~iG~~la~~l~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 78 (245)
T PRK12937 1 MTLSNKVAIVTGASRGIGAAIARRLAADGFA--VAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAE 78 (245)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999999999987 7777765543 333444444456789999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|++|||+|... ..+..+.+.+++++++++|+.+++.+++.+.+.+... ++++++||..+
T Consensus 79 ~~~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--------~~iv~~ss~~~ 143 (245)
T PRK12937 79 TAFGRIDVLVNNAGVMP-------LGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQG--------GRIINLSTSVI 143 (245)
T ss_pred HHcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccC--------cEEEEEeeccc
Confidence 99999999999999864 4556677788999999999999999999999988643 28999999877
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCChHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFTKEFS 253 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~~~~~ 253 (282)
..+ .++...|+++|++++.++++++.++.+. ++++++++||+++|++.... ....+.....+|+++
T Consensus 144 ~~~---~~~~~~Y~~sK~a~~~~~~~~a~~~~~~--~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 218 (245)
T PRK12937 144 ALP---LPGYGPYAASKAAVEGLVHVLANELRGR--GITVNAVAPGPVATELFFNGKSAEQIDQLAGLAPLERLGTPEEI 218 (245)
T ss_pred cCC---CCCCchhHHHHHHHHHHHHHHHHHhhhc--CeEEEEEEeCCccCchhcccCCHHHHHHHHhcCCCCCCCCHHHH
Confidence 655 5677899999999999999999999887 89999999999999984321 123345566799999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++.+.++++.....++|..+..|++.
T Consensus 219 a~~~~~l~~~~~~~~~g~~~~~~~g~ 244 (245)
T PRK12937 219 AAAVAFLAGPDGAWVNGQVLRVNGGF 244 (245)
T ss_pred HHHHHHHcCccccCccccEEEeCCCC
Confidence 99999999887789999999999874
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=246.25 Aligned_cols=236 Identities=27% Similarity=0.378 Sum_probs=201.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|++++|++|||||+++||.+++++|+++|++ |++++|+..+.+.....+.. +.++.++++|++|+++++++++++.+
T Consensus 1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (251)
T PRK07231 1 MRLEGKVAIVTGASSGIGEGIARRFAAEGAR--VVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAALE 77 (251)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999999999988 99999998776554444333 45789999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|++|||+|... ...+..+.+.+.+++.+++|+.+++.+++.+.+.+.+++.+ ++|++||..+.
T Consensus 78 ~~~~~d~vi~~ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~~sS~~~~ 145 (251)
T PRK07231 78 RFGSVDILVNNAGTTH------RNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGG------AIVNVASTAGL 145 (251)
T ss_pred HhCCCCEEEECCCCCC------CCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc------EEEEEcChhhc
Confidence 9999999999999854 23445667788999999999999999999999999876554 89999998877
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc------------CCCCCCCCChH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR------------NVPEGKLFTKE 251 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~------------~~~~~~~~~~~ 251 (282)
.+ .++...|+.+|++++.+++.++.++.+. +|++++++||+++|++...... ..+.....+|+
T Consensus 146 ~~---~~~~~~y~~sk~~~~~~~~~~a~~~~~~--~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (251)
T PRK07231 146 RP---RPGLGWYNASKGAVITLTKALAAELGPD--KIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLATIPLGRLGTPE 220 (251)
T ss_pred CC---CCCchHHHHHHHHHHHHHHHHHHHhhhh--CeEEEEEEECccCCCcchhhhcccChHHHHHHhcCCCCCCCcCHH
Confidence 65 5667889999999999999999999887 8999999999999997554322 22334567899
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++|+.+++++......++|+++.+||+.
T Consensus 221 dva~~~~~l~~~~~~~~~g~~~~~~gg~ 248 (251)
T PRK07231 221 DIANAALFLASDEASWITGVTLVVDGGR 248 (251)
T ss_pred HHHHHHHHHhCccccCCCCCeEEECCCc
Confidence 9999999999877788999999999874
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=247.40 Aligned_cols=232 Identities=21% Similarity=0.280 Sum_probs=200.5
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|+++||||+++||.+++++|+++|++ |++++|+....+...+.+...+.++.++.+|++|++++.++++++.++++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~--v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFA--VAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999987 9999998766655555555556689999999999999999999999999999
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|++|||+|... ..+..+.+.+.+++.+++|+.+++.+++.+.+.|++++.+ ++++++||..+..+
T Consensus 79 d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-----~~iv~~sS~~~~~~--- 143 (254)
T TIGR02415 79 DVMVNNAGVAP-------ITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHG-----GKIINAASIAGHEG--- 143 (254)
T ss_pred CEEEECCCcCC-------CCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCC-----eEEEEecchhhcCC---
Confidence 99999999874 4566677889999999999999999999999998876432 38999999888766
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-------------------CCCCCCCCC
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-------------------NVPEGKLFT 249 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-------------------~~~~~~~~~ 249 (282)
.+....|+++|++++.|++.++.++.+. +|++++++||+++|++.+.... ..+.....+
T Consensus 144 ~~~~~~Y~~sK~a~~~~~~~l~~~~~~~--~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (254)
T TIGR02415 144 NPILSAYSSTKFAVRGLTQTAAQELAPK--GITVNAYCPGIVKTPMWEEIDEETSEIAGKPIGEGFEEFSSEIALGRPSE 221 (254)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhccc--CeEEEEEecCcccChhhhhhhhhhhhcccCchHHHHHHHHhhCCCCCCCC
Confidence 5677899999999999999999999987 8999999999999998653221 123345679
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
|+++++.+.++++.....++|+++.+||+.
T Consensus 222 ~~~~a~~~~~l~~~~~~~~~g~~~~~d~g~ 251 (254)
T TIGR02415 222 PEDVAGLVSFLASEDSDYITGQSILVDGGM 251 (254)
T ss_pred HHHHHHHHHhhcccccCCccCcEEEecCCc
Confidence 999999999999988889999999999975
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=248.27 Aligned_cols=235 Identities=20% Similarity=0.268 Sum_probs=197.7
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc-cCC-CceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN-RFP-ERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~-~~~-~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
+|++|||||+++||.+++++|+++|++ |++++|+....+...+.+. ..+ .++.++.+|++|.+++.++++++.+++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~--vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 79 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYR--VAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIF 79 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999999987 9999998776655443332 222 478999999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeecccccc
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~~~~~ 184 (282)
+++|++|||+|... ..+..+.+.+.|++.+++|+.+++++++.+.+.|.+++ .+ ++|++||..+..
T Consensus 80 ~~id~vv~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~------~iv~~ss~~~~~ 146 (259)
T PRK12384 80 GRVDLLVYNAGIAK-------AAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQG------RIIQINSKSGKV 146 (259)
T ss_pred CCCCEEEECCCcCC-------CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCc------EEEEecCccccc
Confidence 99999999999875 44566778889999999999999999999999998765 33 899999987766
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccc-cCCCCccc-------------------ccCCCC
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTV-DTDLSRPF-------------------QRNVPE 244 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v-~t~~~~~~-------------------~~~~~~ 244 (282)
+ .+....|+++|++++.++++++.|++++ +|+|++++||++ .|++.... ....+.
T Consensus 147 ~---~~~~~~Y~~sKaa~~~l~~~la~e~~~~--gi~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (259)
T PRK12384 147 G---SKHNSGYSAAKFGGVGLTQSLALDLAEY--GITVHSLMLGNLLKSPMFQSLLPQYAKKLGIKPDEVEQYYIDKVPL 221 (259)
T ss_pred C---CCCCchhHHHHHHHHHHHHHHHHHHHHc--CcEEEEEecCCcccchhhhhhhHHHHHhcCCChHHHHHHHHHhCcc
Confidence 5 4566789999999999999999999988 899999999975 66654321 112345
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 245 GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
.+..+|+|+++.++++++.....++|+.+.+|+++-.|
T Consensus 222 ~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g~~~~ 259 (259)
T PRK12384 222 KRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQVMF 259 (259)
T ss_pred cCCCCHHHHHHHHHHHcCcccccccCceEEEcCCEEeC
Confidence 66779999999999999877778999999999998766
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=244.45 Aligned_cols=227 Identities=25% Similarity=0.388 Sum_probs=196.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|++++|++|||||+++||.+++++|+++|++ |++.+|+. ....+.++.++++|++|.++++++++++.+
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~--v~~~~~~~---------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAK--VIGFDQAF---------LTQEDYPFATFVLDVSDAAAVAQVCQRLLA 72 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEecch---------hhhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999988 99999876 112245789999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|++|||+|... ..+..+.+.++++..+++|+.+++.+++.+.+.|++++.| +|+++||..+.
T Consensus 73 ~~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g------~iv~~ss~~~~ 139 (252)
T PRK08220 73 ETGPLDVLVNAAGILR-------MGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSG------AIVTVGSNAAH 139 (252)
T ss_pred HcCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC------EEEEECCchhc
Confidence 9999999999999864 4455666788999999999999999999999999876654 89999998776
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc------------------cCCCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ------------------RNVPEG 245 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~------------------~~~~~~ 245 (282)
.+ .++...|+++|++++.++++++.|+++. +|+++++.||++.|++..... ...+..
T Consensus 140 ~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (252)
T PRK08220 140 VP---RIGMAAYGASKAALTSLAKCVGLELAPY--GVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKLGIPLG 214 (252)
T ss_pred cC---CCCCchhHHHHHHHHHHHHHHHHHhhHh--CeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhhcCCCc
Confidence 55 5667889999999999999999999987 899999999999999754321 122445
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
...+|+++|+.+++++++....++|+.+..||+.
T Consensus 215 ~~~~~~dva~~~~~l~~~~~~~~~g~~i~~~gg~ 248 (252)
T PRK08220 215 KIARPQEIANAVLFLASDLASHITLQDIVVDGGA 248 (252)
T ss_pred ccCCHHHHHHHHHHHhcchhcCccCcEEEECCCe
Confidence 6779999999999999888889999999999974
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=246.75 Aligned_cols=242 Identities=22% Similarity=0.293 Sum_probs=202.3
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
+..++++||++|||||+++||.++|++|+++|++ |++++|+.++.+...+.+...+.++.+++||++|++++++++++
T Consensus 5 ~~~~~~~~k~ilItGa~g~IG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 5 LELFDLSGKTALVTGGSRGLGLQIAEALGEAGAR--VVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred hhhhCcCCCEEEEECCCchHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 4567789999999999999999999999999987 99999988766555554444556889999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhh-hhcCCCCCccceeEEEEeec
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPL-LKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-l~~~~~g~~~~~~~iv~~ss 179 (282)
+.++++++|++|||+|... ..+..+.+.+.|++.+++|+.+++.+++.+.+. +.+++.+ ++|++||
T Consensus 83 ~~~~~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~------~~v~~sS 149 (259)
T PRK08213 83 TLERFGHVDILVNNAGATW-------GAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYG------RIINVAS 149 (259)
T ss_pred HHHHhCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCe------EEEEECC
Confidence 9999999999999999764 344556677899999999999999999999998 6655443 8999999
Q ss_pred cccccCCCCC-CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCCh
Q 023441 180 RVGSIGDNRL-GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTK 250 (282)
Q Consensus 180 ~~~~~~~~~~-~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~ 250 (282)
..+..+..+. .+...|+++|++++.++++++.++.+. ++++++++||+++|++..... ...+.....+|
T Consensus 150 ~~~~~~~~~~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~--gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (259)
T PRK08213 150 VAGLGGNPPEVMDTIAYNTSKGAVINFTRALAAEWGPH--GIRVNAIAPGFFPTKMTRGTLERLGEDLLAHTPLGRLGDD 227 (259)
T ss_pred hhhccCCCccccCcchHHHHHHHHHHHHHHHHHHhccc--CEEEEEEecCcCCCcchhhhhHHHHHHHHhcCCCCCCcCH
Confidence 8776553221 345789999999999999999999988 899999999999998754322 22344455689
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+++++.+.+++.......+|+.+.+|++.
T Consensus 228 ~~va~~~~~l~~~~~~~~~G~~~~~~~~~ 256 (259)
T PRK08213 228 EDLKGAALLLASDASKHITGQILAVDGGV 256 (259)
T ss_pred HHHHHHHHHHhCccccCccCCEEEECCCe
Confidence 99999999999888889999999999874
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=244.28 Aligned_cols=237 Identities=22% Similarity=0.337 Sum_probs=193.4
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEe-ecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT-CRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~-~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++|||||++|||.+++++|+++|++ |++. .|+.+..+...+.+...+.++.+++||++|+++++++++++.++++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWS--VGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFG 79 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCE--EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 479999999999999999999999987 6665 4565555555554555566899999999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++|||+|... +..+..+.+.++++..+++|+.+++.+++.+.+.+..++.+ ..+++|++||..+..+.
T Consensus 80 ~id~li~~ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~~~~ii~~sS~~~~~~~ 150 (248)
T PRK06947 80 RLDALVNNAGIVA------PSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGG---RGGAIVNVSSIASRLGS 150 (248)
T ss_pred CCCEEEECCccCC------CCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCC---CCcEEEEECchhhcCCC
Confidence 9999999999864 23445677788999999999999999999999988654321 11389999998877652
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCChHHHHHHH
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFTKEFSVQKL 257 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~~~~~a~~~ 257 (282)
. ..+..|+++|++++.++++++.++.+. +++++.++||+++|++.... ....+.....+|+++++.+
T Consensus 151 ~--~~~~~Y~~sK~~~~~~~~~la~~~~~~--~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~e~va~~~ 226 (248)
T PRK06947 151 P--NEYVDYAGSKGAVDTLTLGLAKELGPH--GVRVNAVRPGLIETEIHASGGQPGRAARLGAQTPLGRAGEADEVAETI 226 (248)
T ss_pred C--CCCcccHhhHHHHHHHHHHHHHHhhhh--CcEEEEEeccCcccccccccCCHHHHHHHhhcCCCCCCcCHHHHHHHH
Confidence 1 234689999999999999999999887 89999999999999975421 1122334567899999999
Q ss_pred HHHHhhcCCCCCCceeecCCcc
Q 023441 258 LNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 258 ~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+++++......+|.++.+||+.
T Consensus 227 ~~l~~~~~~~~~G~~~~~~gg~ 248 (248)
T PRK06947 227 VWLLSDAASYVTGALLDVGGGR 248 (248)
T ss_pred HHHcCccccCcCCceEeeCCCC
Confidence 9999888889999999999873
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=271.05 Aligned_cols=237 Identities=25% Similarity=0.346 Sum_probs=201.3
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.++||++|||||++|||+++|++|+++|++ |++++|+.++++...+.+ +.++.++++|++|+++++++++++.++
T Consensus 2 ~~~~k~~lITGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (520)
T PRK06484 2 KAQSRVVLVTGAAGGIGRAACQRFARAGDQ--VVVADRNVERARERADSL---GPDHHALAMDVSDEAQIREGFEQLHRE 76 (520)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHh---CCceeEEEeccCCHHHHHHHHHHHHHH
Confidence 457999999999999999999999999987 999999887765443332 457889999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||+|.... ...++.+.+.++|++.+++|+.+++.+++.+.|.|.+++.| ++||++||..+..
T Consensus 77 ~g~iD~li~nag~~~~-----~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g-----~~iv~isS~~~~~ 146 (520)
T PRK06484 77 FGRIDVLVNNAGVTDP-----TMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHG-----AAIVNVASGAGLV 146 (520)
T ss_pred hCCCCEEEECCCcCCC-----CCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-----CeEEEECCcccCC
Confidence 9999999999998420 12345667789999999999999999999999999765443 3899999998877
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-----------CCCCCCCCChHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-----------NVPEGKLFTKEFS 253 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-----------~~~~~~~~~~~~~ 253 (282)
+ .++...|+++|+++.+|+++++.|+.+. +|+|++|+||+++|++...+.. ..+.....+|+++
T Consensus 147 ~---~~~~~~Y~asKaal~~l~~~la~e~~~~--~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (520)
T PRK06484 147 A---LPKRTAYSASKAAVISLTRSLACEWAAK--GIRVNAVLPGYVRTQMVAELERAGKLDPSAVRSRIPLGRLGRPEEI 221 (520)
T ss_pred C---CCCCchHHHHHHHHHHHHHHHHHHhhhh--CeEEEEEccCCcCchhhhhhcccchhhhHHHHhcCCCCCCcCHHHH
Confidence 6 5677899999999999999999999988 8999999999999998654221 1233445689999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
++.+.++++.....++|..+.+|+++..
T Consensus 222 a~~v~~l~~~~~~~~~G~~~~~~gg~~~ 249 (520)
T PRK06484 222 AEAVFFLASDQASYITGSTLVVDGGWTV 249 (520)
T ss_pred HHHHHHHhCccccCccCceEEecCCeec
Confidence 9999999998888999999999988654
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=242.26 Aligned_cols=232 Identities=22% Similarity=0.259 Sum_probs=194.9
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC-CCceeEEEeeCCC--hhHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-PERLDVLQLDLTV--ESTIEASAKSI 101 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~-~~~v~~~~~Dls~--~~~~~~~~~~~ 101 (282)
+++||+++||||++|||++++++|+++|++ |++.+|+.+..+...+.+.+. +..+.++++|+++ .+++.++++++
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i 80 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGAT--VILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATI 80 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCE--EEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHH
Confidence 478899999999999999999999999987 999999998766554444322 3467889999986 56899999999
Q ss_pred HHHc-CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 102 KEKY-GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 102 ~~~~-~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
.+++ +++|++|||+|... +..+..+.+.+++.+.+++|+.+++.+++.+.|.+.+.+.+ .++++||.
T Consensus 81 ~~~~~~~id~vi~~ag~~~------~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~------~iv~~ss~ 148 (239)
T PRK08703 81 AEATQGKLDGIVHCAGYFY------ALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDA------SVIFVGES 148 (239)
T ss_pred HHHhCCCCCEEEEeccccc------cCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCC------EEEEEecc
Confidence 9988 88999999999753 13456677789999999999999999999999999876554 89999998
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNI 260 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 260 (282)
.+..+ .+....|+++|++++.|+++++.|+.+.+ +++|++|+||+++|++..+..+.........++++++.+.++
T Consensus 149 ~~~~~---~~~~~~Y~~sKaa~~~~~~~la~e~~~~~-~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (239)
T PRK08703 149 HGETP---KAYWGGFGASKAALNYLCKVAADEWERFG-NLRANVLVPGPINSPQRIKSHPGEAKSERKSYGDVLPAFVWW 224 (239)
T ss_pred ccccC---CCCccchHHhHHHHHHHHHHHHHHhccCC-CeEEEEEecCcccCccccccCCCCCccccCCHHHHHHHHHHH
Confidence 77655 56678899999999999999999998762 699999999999999866543333344567999999999999
Q ss_pred HhhcCCCCCCceee
Q 023441 261 INNIKSHDNGKFFA 274 (282)
Q Consensus 261 ~~~~~~~~~g~~~~ 274 (282)
+++....++|+.+.
T Consensus 225 ~~~~~~~~~g~~~~ 238 (239)
T PRK08703 225 ASAESKGRSGEIVY 238 (239)
T ss_pred hCccccCcCCeEee
Confidence 99888999999875
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=244.32 Aligned_cols=230 Identities=26% Similarity=0.353 Sum_probs=193.8
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||+++||||+++||.+++++|+++|++ |++++|+.+..+...+ +.+.++.++++|++|.+++.++++.+.+.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~--v~~~~r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGAR--VAITGRDPASLEAARA---ELGESALVIRADAGDVAAQKALAQALAEA 77 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEecCCHHHHHHHHH---HhCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999999987 9999998765443332 22557889999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|++|||+|... ..+..+.+.+++++.+++|+.+++.+++++.|.|..+ + ++++++|..+..
T Consensus 78 ~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~------~~i~~~S~~~~~ 142 (249)
T PRK06500 78 FGRLDAVFINAGVAK-------FAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANP--A------SIVLNGSINAHI 142 (249)
T ss_pred hCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC--C------EEEEEechHhcc
Confidence 999999999999864 4455677889999999999999999999999988543 2 677888877766
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------------ccCCCCCCCCCh
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--------------QRNVPEGKLFTK 250 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--------------~~~~~~~~~~~~ 250 (282)
+ .+....|+++|++++.++++++.|+.+. +|++++++||+++|++.+.. ....+.....+|
T Consensus 143 ~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (249)
T PRK06500 143 G---MPNSSVYAASKAALLSLAKTLSGELLPR--GIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPLGRFGTP 217 (249)
T ss_pred C---CCCccHHHHHHHHHHHHHHHHHHHhhhc--CeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCCCCCcCH
Confidence 5 5667899999999999999999999877 89999999999999975321 111233456689
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+++++.+.+++++....++|..+.+||+.
T Consensus 218 ~~va~~~~~l~~~~~~~~~g~~i~~~gg~ 246 (249)
T PRK06500 218 EEIAKAVLYLASDESAFIVGSEIIVDGGM 246 (249)
T ss_pred HHHHHHHHHHcCccccCccCCeEEECCCc
Confidence 99999999999877789999999999985
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=244.56 Aligned_cols=236 Identities=21% Similarity=0.289 Sum_probs=187.3
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC----cccccccccccCCCceeEEEeeCCChhHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN----GATGLLDLKNRFPERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~----~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~ 98 (282)
.++++||+++||||++|||.++|++|+++|++ |++++++.. ..+...+.+...+.++.++++|++|++++++++
T Consensus 3 ~~~l~~k~vlItGa~~gIG~~~a~~l~~~G~~--vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 80 (257)
T PRK12744 3 DHSLKGKVVLIAGGAKNLGGLIARDLAAQGAK--AVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLF 80 (257)
T ss_pred CCCCCCcEEEEECCCchHHHHHHHHHHHCCCc--EEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHH
Confidence 35678999999999999999999999999988 666655432 222233333344567899999999999999999
Q ss_pred HHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe-
Q 023441 99 KSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL- 177 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~- 177 (282)
+++.+.++++|++|||+|... ..+..+.+.+++++.+++|+.+++.+++.+.|.|.+++ .++++
T Consensus 81 ~~~~~~~~~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--------~iv~~~ 145 (257)
T PRK12744 81 DDAKAAFGRPDIAINTVGKVL-------KKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNG--------KIVTLV 145 (257)
T ss_pred HHHHHhhCCCCEEEECCcccC-------CCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCC--------CEEEEe
Confidence 999999999999999999864 34556677889999999999999999999999886542 44444
Q ss_pred eccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc------------CCCC-
Q 023441 178 SARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR------------NVPE- 244 (282)
Q Consensus 178 ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~------------~~~~- 244 (282)
||..+.. .+.+..|+++|++++.|+++++.|+.+. +|+|++++||++.|++...... ..+.
T Consensus 146 ss~~~~~----~~~~~~Y~~sK~a~~~~~~~la~e~~~~--~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
T PRK12744 146 TSLLGAF----TPFYSAYAGSKAPVEHFTRAASKEFGAR--GISVTAVGPGPMDTPFFYPQEGAEAVAYHKTAAALSPFS 219 (257)
T ss_pred cchhccc----CCCcccchhhHHHHHHHHHHHHHHhCcC--ceEEEEEecCccccchhccccccchhhcccccccccccc
Confidence 5554432 3567889999999999999999999987 8999999999999987532110 0011
Q ss_pred -CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 245 -GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 245 -~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
....+|+|++..+.+++++ ...++|+.+.+|+++.-|
T Consensus 220 ~~~~~~~~dva~~~~~l~~~-~~~~~g~~~~~~gg~~~~ 257 (257)
T PRK12744 220 KTGLTDIEDIVPFIRFLVTD-GWWITGQTILINGGYTTK 257 (257)
T ss_pred cCCCCCHHHHHHHHHHhhcc-cceeecceEeecCCccCC
Confidence 1456899999999999985 468899999999987654
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=246.54 Aligned_cols=217 Identities=22% Similarity=0.254 Sum_probs=187.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||+++||||++|||++++++|+++|++ |++.+|+.+.+++..+... ++.++++|++|++++.++++.+.+
T Consensus 1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~~--v~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~ 74 (273)
T PRK07825 1 DDLRGKVVAITGGARGIGLATARALAALGAR--VAIGDLDEALAKETAAELG----LVVGGPLDVTDPASFAAFLDAVEA 74 (273)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHhc----cceEEEccCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999988 9999998877655433322 578899999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||+|... ..+..+.+.+.+++++++|+.+++.+++.+.|.|.+++.| +||++||..+.
T Consensus 75 ~~~~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g------~iv~isS~~~~ 141 (273)
T PRK07825 75 DLGPIDVLVNNAGVMP-------VGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRG------HVVNVASLAGK 141 (273)
T ss_pred HcCCCCEEEECCCcCC-------CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------EEEEEcCcccc
Confidence 9999999999999875 4556667788999999999999999999999999887765 99999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhh
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
.+ .++...|+++|+++.+|+++++.|+.+. +|++++|+||+++|++...... .......+|+++|+.++..+..
T Consensus 142 ~~---~~~~~~Y~asKaa~~~~~~~l~~el~~~--gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~va~~~~~~l~~ 215 (273)
T PRK07825 142 IP---VPGMATYCASKHAVVGFTDAARLELRGT--GVHVSVVLPSFVNTELIAGTGG-AKGFKNVEPEDVAAAIVGTVAK 215 (273)
T ss_pred CC---CCCCcchHHHHHHHHHHHHHHHHHhhcc--CcEEEEEeCCcCcchhhccccc-ccCCCCCCHHHHHHHHHHHHhC
Confidence 76 6778899999999999999999999887 8999999999999998765322 1223457999999999999976
Q ss_pred cC
Q 023441 264 IK 265 (282)
Q Consensus 264 ~~ 265 (282)
..
T Consensus 216 ~~ 217 (273)
T PRK07825 216 PR 217 (273)
T ss_pred CC
Confidence 54
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=239.58 Aligned_cols=222 Identities=22% Similarity=0.321 Sum_probs=186.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||+++||||++|||++++++|+++|++ |++++|+..... ..++.++++|++++ ++++.+
T Consensus 1 ~~l~~k~~lVtGas~~iG~~ia~~l~~~G~~--v~~~~r~~~~~~---------~~~~~~~~~D~~~~------~~~~~~ 63 (235)
T PRK06550 1 QEFMTKTVLITGAASGIGLAQARAFLAQGAQ--VYGVDKQDKPDL---------SGNFHFLQLDLSDD------LEPLFD 63 (235)
T ss_pred CCCCCCEEEEcCCCchHHHHHHHHHHHCCCE--EEEEeCCccccc---------CCcEEEEECChHHH------HHHHHH
Confidence 5688999999999999999999999999987 888898754321 24688999999987 445555
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||+|... ...+..+.+.+++++.+++|+.+++++++.+.|.+.+++.+ +|+++||..+.
T Consensus 64 ~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~~sS~~~~ 131 (235)
T PRK06550 64 WVPSVDILCNTAGILD------DYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSG------IIINMCSIASF 131 (235)
T ss_pred hhCCCCEEEECCCCCC------CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc------EEEEEcChhhc
Confidence 6789999999999763 12445667788999999999999999999999999876654 89999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKEFS 253 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~~ 253 (282)
.+ .++...|+++|++++.++++++.|+.++ +|++++|+||+++|++..... ...+..++.+|+++
T Consensus 132 ~~---~~~~~~Y~~sK~a~~~~~~~la~~~~~~--gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (235)
T PRK06550 132 VA---GGGGAAYTASKHALAGFTKQLALDYAKD--GIQVFGIAPGAVKTPMTAADFEPGGLADWVARETPIKRWAEPEEV 206 (235)
T ss_pred cC---CCCCcccHHHHHHHHHHHHHHHHHhhhc--CeEEEEEeeCCccCcccccccCchHHHHHHhccCCcCCCCCHHHH
Confidence 65 5667899999999999999999999887 899999999999999754211 12334567799999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
|+.+++++++....++|+++.+||++
T Consensus 207 a~~~~~l~s~~~~~~~g~~~~~~gg~ 232 (235)
T PRK06550 207 AELTLFLASGKADYMQGTIVPIDGGW 232 (235)
T ss_pred HHHHHHHcChhhccCCCcEEEECCce
Confidence 99999999888889999999999986
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=243.90 Aligned_cols=241 Identities=20% Similarity=0.251 Sum_probs=195.4
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccc-ccCC-CceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK-NRFP-ERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~-~~~~-~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++||+++||||++|||+++|++|+++|++ |++++|+.+..+...+.+ ...+ ..+.+++||++|++++.++++++.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~--v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGI--VIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAE 79 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999999987 899999987766544333 2222 3567789999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||||..... ...+..+.+.+.+...+++|+.+++.+++++.|.|++++.+ +||++||..+.
T Consensus 80 ~~~~id~vi~~A~~~~~~----~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~iv~~sS~~~~ 149 (256)
T PRK09186 80 KYGKIDGAVNCAYPRNKD----YGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGG------NLVNISSIYGV 149 (256)
T ss_pred HcCCccEEEECCcccccc----ccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc------eEEEEechhhh
Confidence 999999999999865310 12345667788999999999999999999999999876654 89999998765
Q ss_pred cCC-------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc----ccccCCCCCCCCChHH
Q 023441 184 IGD-------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR----PFQRNVPEGKLFTKEF 252 (282)
Q Consensus 184 ~~~-------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~----~~~~~~~~~~~~~~~~ 252 (282)
.+. .+......|+++|+++++++++++.|+.+. +|++++++||++.++... .+....+.....+|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~--~i~v~~i~Pg~~~~~~~~~~~~~~~~~~~~~~~~~~~d 227 (256)
T PRK09186 150 VAPKFEIYEGTSMTSPVEYAAIKAGIIHLTKYLAKYFKDS--NIRVNCVSPGGILDNQPEAFLNAYKKCCNGKGMLDPDD 227 (256)
T ss_pred ccccchhccccccCCcchhHHHHHHHHHHHHHHHHHhCcC--CeEEEEEecccccCCCCHHHHHHHHhcCCccCCCCHHH
Confidence 431 011122469999999999999999999887 899999999999876432 2222334456789999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+.+++++++....++|+.+.+|+++.
T Consensus 228 va~~~~~l~~~~~~~~~g~~~~~~~g~~ 255 (256)
T PRK09186 228 ICGTLVFLLSDQSKYITGQNIIVDDGFS 255 (256)
T ss_pred hhhhHhheeccccccccCceEEecCCcc
Confidence 9999999998888899999999999865
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=246.46 Aligned_cols=230 Identities=25% Similarity=0.317 Sum_probs=185.7
Q ss_pred EEEEecCCCchhHHHHHHHHh----cCCCcEEEEeecCCCccccccccccc--CCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLE----KNDKGCVIATCRNPNGATGLLDLKNR--FPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~----~G~~~~vi~~~r~~~~~~~~~~~~~~--~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++||||++|||+++|++|++ +|++ |++.+|+.+.++.+.+.+.. .+.++.++++|++|+++++++++.+.+
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~--V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~ 79 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSV--LVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRE 79 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcE--EEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHh
Confidence 689999999999999999997 7887 99999998877665544433 244789999999999999999999998
Q ss_pred HcCCc----cEEEECcccCCCCCCCCCcccccc-cchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 104 KYGSL----NLLINASGILSIPNVLQPETTLNK-VEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 104 ~~~~i----d~lv~~ag~~~~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
+++++ |++|||||..... .....+ .+.+.|++.+++|+.+++.+++.+.|.|.+++. ..+.|+++|
T Consensus 80 ~~g~~~~~~~~lv~nAG~~~~~-----~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~----~~~~iv~is 150 (256)
T TIGR01500 80 LPRPKGLQRLLLINNAGTLGDV-----SKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPG----LNRTVVNIS 150 (256)
T ss_pred ccccCCCceEEEEeCCcccCcc-----ccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCC----CCCEEEEEC
Confidence 87653 6999999975310 111222 245789999999999999999999999986521 013899999
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-------------CCCCC
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-------------NVPEG 245 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-------------~~~~~ 245 (282)
|..+..+ .++...|+++|++++.|+++++.|+++. +|+||+++||+++|++.+.+.+ ..+..
T Consensus 151 S~~~~~~---~~~~~~Y~asKaal~~l~~~la~e~~~~--~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (256)
T TIGR01500 151 SLCAIQP---FKGWALYCAGKAARDMLFQVLALEEKNP--NVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQELKAKG 225 (256)
T ss_pred CHHhCCC---CCCchHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEecCCcccchHHHHHHHhcCChhHHHHHHHHHhcC
Confidence 9988765 5677899999999999999999999987 8999999999999998653211 12345
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecC
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWD 276 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d 276 (282)
+..+|+++|+.++++++. .+.++|+++.+.
T Consensus 226 ~~~~p~eva~~~~~l~~~-~~~~~G~~~~~~ 255 (256)
T TIGR01500 226 KLVDPKVSAQKLLSLLEK-DKFKSGAHVDYY 255 (256)
T ss_pred CCCCHHHHHHHHHHHHhc-CCcCCcceeecc
Confidence 678999999999999974 578999988753
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=243.70 Aligned_cols=236 Identities=21% Similarity=0.234 Sum_probs=199.5
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||++|||||+++||.+++++|+++|++ |++.+|++++.+...+.++..+.++.++++|++|.++++++++.+.++
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAA--VAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCe--EEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 367999999999999999999999999998 999999987766655555555668899999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhh-hcCCCCCccceeEEEEeeccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLL-KVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l-~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++++|++|||+|... .....+.+.+.++..+++|+.+++.+++.+++.+ ++++. ++||++||..+.
T Consensus 82 ~~~~d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~------~~iv~~ss~~~~ 148 (262)
T PRK13394 82 FGSVDILVSNAGIQI-------VNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRG------GVVIYMGSVHSH 148 (262)
T ss_pred cCCCCEEEECCccCC-------CCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCC------cEEEEEcchhhc
Confidence 999999999999864 3445556678899999999999999999999999 55444 399999998776
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------------------cCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------------------RNVP 243 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------------------~~~~ 243 (282)
.+ .+....|+++|++++.+++.++.++.+. ++++++++||++.|++..... ...+
T Consensus 149 ~~---~~~~~~y~~sk~a~~~~~~~la~~~~~~--~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (262)
T PRK13394 149 EA---SPLKSAYVTAKHGLLGLARVLAKEGAKH--NVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGKTV 223 (262)
T ss_pred CC---CCCCcccHHHHHHHHHHHHHHHHHhhhc--CeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHHhcCCC
Confidence 55 4566789999999999999999999877 899999999999998643211 1122
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 244 EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
...+.+++++++.++++++......+|+.|.+|+++.
T Consensus 224 ~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~g~~ 260 (262)
T PRK13394 224 DGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSHGWF 260 (262)
T ss_pred CCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCCcee
Confidence 3467799999999999998777788999999999853
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=252.62 Aligned_cols=235 Identities=18% Similarity=0.288 Sum_probs=187.7
Q ss_pred EEecCCCchhHHHHHHHHhcC-CCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccE
Q 023441 32 LVQGASRGIGLEFAKQLLEKN-DKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNL 110 (282)
Q Consensus 32 lItGas~giG~a~a~~la~~G-~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~ 110 (282)
|||||++|||++++++|+++| ++ |++.+|+.++.+.+.+.+...+.++.++++|++|.++++++++++.+.++++|+
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~ 78 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWH--VVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDV 78 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCE--EEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCE
Confidence 699999999999999999999 77 999999887766554444333457889999999999999999999988899999
Q ss_pred EEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC----
Q 023441 111 LINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD---- 186 (282)
Q Consensus 111 lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~---- 186 (282)
||||||+.. +..+..+.+.++|++.+++|+.+++.+++.++|.|.+++.. .++||++||..+..+.
T Consensus 79 lInnAG~~~------~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~----~g~IV~vsS~~~~~~~~~~~ 148 (308)
T PLN00015 79 LVCNAAVYL------PTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYP----SKRLIIVGSITGNTNTLAGN 148 (308)
T ss_pred EEECCCcCC------CCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC----CCEEEEEecccccccccccc
Confidence 999999863 12244566788999999999999999999999999876410 1389999998764320
Q ss_pred ----------------------------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccc-cCCCCcc
Q 023441 187 ----------------------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTV-DTDLSRP 237 (282)
Q Consensus 187 ----------------------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v-~t~~~~~ 237 (282)
.+..+...|++||++...+++.+++++.+. .+|+|++++||+| .|++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~-~gi~v~~v~PG~v~~t~~~~~ 227 (308)
T PLN00015 149 VPPKANLGDLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEE-TGITFASLYPGCIATTGLFRE 227 (308)
T ss_pred CCCccchhhhhhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhccc-CCeEEEEecCCcccCcccccc
Confidence 011345779999999889999999999652 2899999999999 7888653
Q ss_pred ccc----------CCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 238 FQR----------NVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 238 ~~~----------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
... ..+.....+|++.|+.+++++.+.....+|.++.++|+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~~~l~~~~~~~~~G~~~~~~g~~ 279 (308)
T PLN00015 228 HIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLTKSGVYWSWNGGS 279 (308)
T ss_pred ccHHHHHHHHHHHHHHhcccccHHHhhhhhhhhccccccCCCccccccCCcc
Confidence 210 112234578999999999999887778899999988753
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=239.45 Aligned_cols=234 Identities=20% Similarity=0.282 Sum_probs=197.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++++|+++||||+++||++++++|+++|+. |++.+|+.++.+..... .+.++.++.+|++|.++++++++++.+
T Consensus 2 ~~~~~~~vlItGa~g~iG~~la~~l~~~g~~--v~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (245)
T PRK12936 2 FDLSGRKALVTGASGGIGEEIARLLHAQGAI--VGLHGTRVEKLEALAAE---LGERVKIFPANLSDRDEVKALGQKAEA 76 (245)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEcCCHHHHHHHHHH---hCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999986 88888887665543322 245788999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||+|... ..+..+.+.+++++.+++|+.+++.+++.+.+.+.+++.+ .+|++||..+.
T Consensus 77 ~~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~~sS~~~~ 143 (245)
T PRK12936 77 DLEGVDILVNNAGITK-------DGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYG------RIINITSVVGV 143 (245)
T ss_pred HcCCCCEEEECCCCCC-------CCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC------EEEEECCHHhC
Confidence 9999999999999864 3445566678899999999999999999999888665443 89999998877
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFSVQ 255 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~a~ 255 (282)
.+ .+....|+++|+++..+++.++.++.+. ++++++++||+++|++..... ...+..+..+|+++++
T Consensus 144 ~~---~~~~~~Y~~sk~a~~~~~~~la~~~~~~--~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~ 218 (245)
T PRK12936 144 TG---NPGQANYCASKAGMIGFSKSLAQEIATR--NVTVNCVAPGFIESAMTGKLNDKQKEAIMGAIPMKRMGTGAEVAS 218 (245)
T ss_pred cC---CCCCcchHHHHHHHHHHHHHHHHHhhHh--CeEEEEEEECcCcCchhcccChHHHHHHhcCCCCCCCcCHHHHHH
Confidence 66 5667899999999999999999999887 899999999999998765321 2234455668999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCccc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+.++++.....++|+.+..|++..
T Consensus 219 ~~~~l~~~~~~~~~G~~~~~~~g~~ 243 (245)
T PRK12936 219 AVAYLASSEAAYVTGQTIHVNGGMA 243 (245)
T ss_pred HHHHHcCccccCcCCCEEEECCCcc
Confidence 9999987766788999999999865
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=242.48 Aligned_cols=234 Identities=20% Similarity=0.279 Sum_probs=199.9
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
+++|++|||||+++||.+++++|+++|++ |++.+|+.+..+.+.+.....+.++.++++|++|+++++++++++.+++
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAK--VAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999987 9999998876655544444445689999999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
+++|++|||+|... ..+..+.+.+.++..+++|+.+++.+.+.+.+.|++++.+ +++++||..+..+
T Consensus 79 ~~~d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~ii~iss~~~~~~ 145 (250)
T TIGR03206 79 GPVDVLVNNAGWDK-------FGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAG------RIVNIASDAARVG 145 (250)
T ss_pred CCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCe------EEEEECchhhccC
Confidence 99999999999864 4455566778899999999999999999999999876544 8999999888766
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------------cCCCCCCCCChH
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------------RNVPEGKLFTKE 251 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------------~~~~~~~~~~~~ 251 (282)
.++...|+++|++++.++++++.++.+. +++++.++||+++|++..... ...+.....+|+
T Consensus 146 ---~~~~~~Y~~sK~a~~~~~~~la~~~~~~--~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (250)
T TIGR03206 146 ---SSGEAVYAACKGGLVAFSKTMAREHARH--GITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIPLGRLGQPD 220 (250)
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhHh--CcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCCccCCcCHH
Confidence 5667899999999999999999999877 899999999999999754321 123334566899
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++|+.+.+++++....++|+.+..|++.
T Consensus 221 dva~~~~~l~~~~~~~~~g~~~~~~~g~ 248 (250)
T TIGR03206 221 DLPGAILFFSSDDASFITGQVLSVSGGL 248 (250)
T ss_pred HHHHHHHHHcCcccCCCcCcEEEeCCCc
Confidence 9999999999888889999999999874
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=240.09 Aligned_cols=236 Identities=22% Similarity=0.336 Sum_probs=191.3
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec-CCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-NPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r-~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+|++|||||+++||.+++++|+++|++ |++..+ +++..+...+.+...+.++.++++|++|.+++.++++.+.++++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~--vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYA--VCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELG 79 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCe--EEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999987 777664 43333334444444456788999999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++|||+|... +..+..+.+.++|++.+++|+.+++.+++.+.+.+.++..+. .++++++||..+..+
T Consensus 80 ~id~li~~ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~---~g~iv~~sS~~~~~~- 149 (248)
T PRK06123 80 RLDALVNNAGILE------AQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGR---GGAIVNVSSMAARLG- 149 (248)
T ss_pred CCCEEEECCCCCC------CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCC---CeEEEEECchhhcCC-
Confidence 9999999999864 123456677889999999999999999999999987543210 138999999887765
Q ss_pred CCCCC-cccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCChHHHHHH
Q 023441 187 NRLGG-WHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFTKEFSVQK 256 (282)
Q Consensus 187 ~~~~~-~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~~~~~a~~ 256 (282)
.+. +..|+++|++++.|+++++.++.+. +|++++++||++.|++.... ....+.....+|+++++.
T Consensus 150 --~~~~~~~Y~~sKaa~~~~~~~la~~~~~~--~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~a~~ 225 (248)
T PRK06123 150 --SPGEYIDYAASKGAIDTMTIGLAKEVAAE--GIRVNAVRPGVIYTEIHASGGEPGRVDRVKAGIPMGRGGTAEEVARA 225 (248)
T ss_pred --CCCCccchHHHHHHHHHHHHHHHHHhccc--CeEEEEEecCcccCchhhccCCHHHHHHHHhcCCCCCCcCHHHHHHH
Confidence 333 3579999999999999999999887 89999999999999975421 112344555689999999
Q ss_pred HHHHHhhcCCCCCCceeecCCcc
Q 023441 257 LLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 257 ~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+.++++......+|+.+.++|++
T Consensus 226 ~~~l~~~~~~~~~g~~~~~~gg~ 248 (248)
T PRK06123 226 ILWLLSDEASYTTGTFIDVSGGR 248 (248)
T ss_pred HHHHhCccccCccCCEEeecCCC
Confidence 99999877778999999999864
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=246.60 Aligned_cols=223 Identities=21% Similarity=0.251 Sum_probs=185.2
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..++++||+++||||++|||+++|++|+++|++ |++++|+.+.++.+.+.+...+.++.++++|++|.+++.++++++
T Consensus 34 ~~~~~~~k~vlItGasggIG~~la~~La~~G~~--Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 111 (293)
T PRK05866 34 QPVDLTGKRILLTGASSGIGEAAAEQFARRGAT--VVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADV 111 (293)
T ss_pred CCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 457788999999999999999999999999987 999999987776655555444567889999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccc--cchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNK--VEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~--~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
.+.++++|++|||||... ..+..+ .+.++++..+++|+.+++.+++.+.|.|.+++.| +||++||
T Consensus 112 ~~~~g~id~li~~AG~~~-------~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g------~iv~isS 178 (293)
T PRK05866 112 EKRIGGVDILINNAGRSI-------RRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDG------HIINVAT 178 (293)
T ss_pred HHHcCCCCEEEECCCCCC-------CcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------EEEEECC
Confidence 999999999999999864 222222 1346788999999999999999999999877655 8999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHH
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLN 259 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~ 259 (282)
..+..+ +.+....|+++|+++++|+++++.|+.++ +|++++++||+++|++.+...... .....+|+++|+.++.
T Consensus 179 ~~~~~~--~~p~~~~Y~asKaal~~l~~~la~e~~~~--gI~v~~v~pg~v~T~~~~~~~~~~-~~~~~~pe~vA~~~~~ 253 (293)
T PRK05866 179 WGVLSE--ASPLFSVYNASKAALSAVSRVIETEWGDR--GVHSTTLYYPLVATPMIAPTKAYD-GLPALTADEAAEWMVT 253 (293)
T ss_pred hhhcCC--CCCCcchHHHHHHHHHHHHHHHHHHhccc--CcEEEEEEcCcccCcccccccccc-CCCCCCHHHHHHHHHH
Confidence 765432 14566789999999999999999999988 899999999999999976532211 2234699999999999
Q ss_pred HHhhc
Q 023441 260 IINNI 264 (282)
Q Consensus 260 ~~~~~ 264 (282)
.+...
T Consensus 254 ~~~~~ 258 (293)
T PRK05866 254 AARTR 258 (293)
T ss_pred HHhcC
Confidence 88754
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=241.76 Aligned_cols=238 Identities=19% Similarity=0.285 Sum_probs=199.8
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.+++|+++||||+++||..++++|+++|++ .|++++|+.++.....+.+...+.++.++.+|+++++++.++++.+.++
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAA-GLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEA 81 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCC-eEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 468899999999999999999999999986 5888899876655444444445668899999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|++|||+|... ..+..+.+.+.++..+++|+.+++.+++.+.+.+.+++.. ++++++||..+..
T Consensus 82 ~g~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-----g~iv~~ss~~~~~ 149 (260)
T PRK06198 82 FGRLDALVNAAGLTD-------RGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAE-----GTIVNIGSMSAHG 149 (260)
T ss_pred hCCCCEEEECCCcCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-----CEEEEECCccccc
Confidence 999999999999864 3455667889999999999999999999999999765321 3899999988765
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc----c-----------ccCCCCCCCCC
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP----F-----------QRNVPEGKLFT 249 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~----~-----------~~~~~~~~~~~ 249 (282)
+ .+....|+++|+++++++++++.|+... +|++++++||++.|++... + ....+.....+
T Consensus 150 ~---~~~~~~Y~~sK~a~~~~~~~~a~e~~~~--~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (260)
T PRK06198 150 G---QPFLAAYCASKGALATLTRNAAYALLRN--RIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQPFGRLLD 224 (260)
T ss_pred C---CCCcchhHHHHHHHHHHHHHHHHHhccc--CeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccCCccCCcC
Confidence 5 4567899999999999999999999987 8999999999999986421 1 01123345679
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++++++.+.+++.+.....+|+.+.+|++.+
T Consensus 225 ~~~~a~~~~~l~~~~~~~~~G~~~~~~~~~~ 255 (260)
T PRK06198 225 PDEVARAVAFLLSDESGLMTGSVIDFDQSVW 255 (260)
T ss_pred HHHHHHHHHHHcChhhCCccCceEeECCccc
Confidence 9999999999998877899999999999875
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=239.80 Aligned_cols=230 Identities=20% Similarity=0.272 Sum_probs=192.3
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC-CcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~-~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++||||++|||+++|++|+++|++ |++++|.. +..+...+.++..+.++.++++|++|.+++.++++++.+.++++|
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~--v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~ 78 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFE--ICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYY 78 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCE--EEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 589999999999999999999998 87877654 333444444444466899999999999999999999999999999
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhh-hhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMS-PLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~-~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
++|||+|... ..+..+.+.++|+..+++|+.+++++.+.+. |.+++++.+ ++|++||..+..+
T Consensus 79 ~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~------~iv~vsS~~~~~~--- 142 (239)
T TIGR01831 79 GVVLNAGITR-------DAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGG------RIITLASVSGVMG--- 142 (239)
T ss_pred EEEECCCCCC-------CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCe------EEEEEcchhhccC---
Confidence 9999999874 3445566788999999999999999999875 555544433 8999999888776
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-------CCCCCCCCChHHHHHHHHHHH
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-------NVPEGKLFTKEFSVQKLLNII 261 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-------~~~~~~~~~~~~~a~~~~~~~ 261 (282)
.++...|+++|++++.++++++.|+... +|++++++||+++|++.....+ ..+.....+|+++++.+.+++
T Consensus 143 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~ 220 (239)
T TIGR01831 143 NRGQVNYSAAKAGLIGATKALAVELAKR--KITVNCIAPGLIDTEMLAEVEHDLDEALKTVPMNRMGQPAEVASLAGFLM 220 (239)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhHh--CeEEEEEEEccCccccchhhhHHHHHHHhcCCCCCCCCHHHHHHHHHHHc
Confidence 5667899999999999999999999887 8999999999999998764322 234456679999999999999
Q ss_pred hhcCCCCCCceeecCCccc
Q 023441 262 NNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 262 ~~~~~~~~g~~~~~d~~~~ 280 (282)
++....++|..+.+||+.+
T Consensus 221 ~~~~~~~~g~~~~~~gg~~ 239 (239)
T TIGR01831 221 SDGASYVTRQVISVNGGMV 239 (239)
T ss_pred CchhcCccCCEEEecCCcC
Confidence 9888999999999999853
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=239.80 Aligned_cols=231 Identities=25% Similarity=0.327 Sum_probs=194.5
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecC-CCcccccccccccC-C-CceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN-PNGATGLLDLKNRF-P-ERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~-~~~~~~~~~~~~~~-~-~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
++||||++|||++++++|+++|++ |++++|+ .+.++...+.+... + ..+.++++|++|+++++++++++.+.+++
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAK--VFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGG 79 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCE--EEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 799999999999999999999987 9999998 55444444333322 2 24567899999999999999999999999
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++|||+|... ..+..+.+.+++++.+++|+.+.+.+++.+.+.|.+++.+ +|+++||..+..+
T Consensus 80 id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~ii~~ss~~~~~~-- 144 (251)
T PRK07069 80 LSVLVNNAGVGS-------FGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPA------SIVNISSVAAFKA-- 144 (251)
T ss_pred ccEEEECCCcCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCc------EEEEecChhhccC--
Confidence 999999999874 4556677788999999999999999999999999876554 8999999988766
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-------------cCCCCCCCCChHHHH
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-------------RNVPEGKLFTKEFSV 254 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-------------~~~~~~~~~~~~~~a 254 (282)
.++...|+++|++++.++++++.|+.+++.+|++++|+||+++|++..... +..+.....+|++++
T Consensus 145 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va 223 (251)
T PRK07069 145 -EPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGVPLGRLGEPDDVA 223 (251)
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccCCCCCCcCHHHHH
Confidence 566788999999999999999999998877899999999999999865321 122334566899999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCcc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+.+++++++.....+|+.+.+|++.
T Consensus 224 ~~~~~l~~~~~~~~~g~~i~~~~g~ 248 (251)
T PRK07069 224 HAVLYLASDESRFVTGAELVIDGGI 248 (251)
T ss_pred HHHHHHcCccccCccCCEEEECCCe
Confidence 9999998887789999999999874
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=239.12 Aligned_cols=234 Identities=19% Similarity=0.331 Sum_probs=194.1
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec-CCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-NPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r-~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++|+++||||++|||.+++++|+++|++ |++..+ +.+..++..+.+...+.++.++++|++|++++.++++++.++
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~--v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAK--VVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCE--EEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999988 665544 444444444444444567999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|++|||+|... .....+.+.+.+++.+++|+.+++.+++.++|.+.+++.+ ++|++||..+..
T Consensus 82 ~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~~sS~~~~~ 148 (247)
T PRK12935 82 FGKVDILVNNAGITR-------DRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEG------RIISISSIIGQA 148 (247)
T ss_pred cCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc------EEEEEcchhhcC
Confidence 999999999999874 3445566778999999999999999999999999766544 899999988876
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------CCCCCCCCChHHHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------NVPEGKLFTKEFSVQK 256 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~~~~~~~~~~~~~a~~ 256 (282)
+ .++...|+++|++++.++++++.++.+. +++++.++||+++|++...... ..+......|+++++.
T Consensus 149 ~---~~~~~~Y~~sK~a~~~~~~~l~~~~~~~--~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~edva~~ 223 (247)
T PRK12935 149 G---GFGQTNYSAAKAGMLGFTKSLALELAKT--NVTVNAICPGFIDTEMVAEVPEEVRQKIVAKIPKKRFGQADEIAKG 223 (247)
T ss_pred C---CCCCcchHHHHHHHHHHHHHHHHHHHHc--CcEEEEEEeCCCcChhhhhccHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 6 4567899999999999999999999887 8999999999999987554321 2233456799999999
Q ss_pred HHHHHhhcCCCCCCceeecCCccc
Q 023441 257 LLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 257 ~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.++++.. ...+|..+.++++..
T Consensus 224 ~~~~~~~~-~~~~g~~~~i~~g~~ 246 (247)
T PRK12935 224 VVYLCRDG-AYITGQQLNINGGLY 246 (247)
T ss_pred HHHHcCcc-cCccCCEEEeCCCcc
Confidence 99988753 478999999998853
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=238.72 Aligned_cols=237 Identities=23% Similarity=0.303 Sum_probs=196.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||+++||||+++||++++++|+++|++ |++.+|+....+.+.+.....+.++.++.+|++|.++++++++++.+
T Consensus 2 ~~~~~k~vlItGasg~iG~~la~~l~~~g~~--vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (250)
T PRK07774 2 GRFDDKVAIVTGAAGGIGQAYAEALAREGAS--VVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVS 79 (250)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999987 99999987665555444444345788999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|+||||+|..... ...+..+.+.+.+++.+++|+.+++++++++.+.+.+++.+ +|+++||..+.
T Consensus 80 ~~~~id~vi~~ag~~~~~----~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~~sS~~~~ 149 (250)
T PRK07774 80 AFGGIDYLVNNAAIYGGM----KLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGG------AIVNQSSTAAW 149 (250)
T ss_pred HhCCCCEEEECCCCcCCC----CCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc------EEEEEeccccc
Confidence 999999999999986311 12345566778899999999999999999999999776554 89999998764
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc---------cCCCCCCCCChHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ---------RNVPEGKLFTKEFSV 254 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~---------~~~~~~~~~~~~~~a 254 (282)
. +...|+++|++++.+++++++++... +|++++++||+++|++..... ...+.....+|++++
T Consensus 150 ~------~~~~Y~~sK~a~~~~~~~l~~~~~~~--~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a 221 (250)
T PRK07774 150 L------YSNFYGLAKVGLNGLTQQLARELGGM--NIRVNAIAPGPIDTEATRTVTPKEFVADMVKGIPLSRMGTPEDLV 221 (250)
T ss_pred C------CccccHHHHHHHHHHHHHHHHHhCcc--CeEEEEEecCcccCccccccCCHHHHHHHHhcCCCCCCcCHHHHH
Confidence 3 34689999999999999999999877 899999999999999865322 122334456899999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCccc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.++.++.......+|+.+.++++.+
T Consensus 222 ~~~~~~~~~~~~~~~g~~~~v~~g~~ 247 (250)
T PRK07774 222 GMCLFLLSDEASWITGQIFNVDGGQI 247 (250)
T ss_pred HHHHHHhChhhhCcCCCEEEECCCee
Confidence 99999988765667899999988754
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=241.99 Aligned_cols=245 Identities=21% Similarity=0.247 Sum_probs=181.8
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC-CCcccccccccc-cCCCceeEEEeeCCChhHH----HHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN-PNGATGLLDLKN-RFPERLDVLQLDLTVESTI----EASAKSIK 102 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~-~~~~~~~~~~~~-~~~~~v~~~~~Dls~~~~~----~~~~~~~~ 102 (282)
++++||||++|||++++++|+++|++ |++.+|. .+..+.+.+.+. ..+.++.++.+|++|++++ +++++++.
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~--V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~ 79 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYR--VVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACF 79 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCe--EEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999998 7776654 445544433332 2345778899999999865 55666666
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcc----cccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPET----TLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
+.++++|+||||||.....+...... ...+....+|.+.+++|+.+++.+++.+.+.+...........+.|++++
T Consensus 80 ~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~ 159 (267)
T TIGR02685 80 RAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLC 159 (267)
T ss_pred HccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEeh
Confidence 78899999999999764111100000 00111123588999999999999999999988643211112234899999
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCC--cc----cccCCCCC-CCCChH
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS--RP----FQRNVPEG-KLFTKE 251 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~--~~----~~~~~~~~-~~~~~~ 251 (282)
|..+..+ .+++..|++||+++++|+++++.|+++. +|++++|+||++.|+.. .. +....+.. ...+|+
T Consensus 160 s~~~~~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (267)
T TIGR02685 160 DAMTDQP---LLGFTMYTMAKHALEGLTRSAALELAPL--QIRVNGVAPGLSLLPDAMPFEVQEDYRRKVPLGQREASAE 234 (267)
T ss_pred hhhccCC---CcccchhHHHHHHHHHHHHHHHHHHhhh--CeEEEEEecCCccCccccchhHHHHHHHhCCCCcCCCCHH
Confidence 9877655 5677899999999999999999999987 89999999999876522 11 11122222 456999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++++.+++++++....++|..+.+||++.
T Consensus 235 ~va~~~~~l~~~~~~~~~G~~~~v~gg~~ 263 (267)
T TIGR02685 235 QIADVVIFLVSPKAKYITGTCIKVDGGLS 263 (267)
T ss_pred HHHHHHHHHhCcccCCcccceEEECCcee
Confidence 99999999999888899999999998853
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=240.17 Aligned_cols=235 Identities=27% Similarity=0.344 Sum_probs=201.1
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
+++|++|||||+++||.+++++|+++|++ |++++|+.++.+.....+...+.+++++.||++|+++++++++++.+.+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAK--VVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999988 9999999887766555554456789999999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
+++|++|||+|... .....+.+.+.++..+++|+.+++.+.+.+.+.|++++.+ ++|++||..+..+
T Consensus 80 ~~~d~vi~~a~~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~iss~~~~~~ 146 (258)
T PRK12429 80 GGVDILVNNAGIQH-------VAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGG------RIINMASVHGLVG 146 (258)
T ss_pred CCCCEEEECCCCCC-------CCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCe------EEEEEcchhhccC
Confidence 99999999999864 4455566778899999999999999999999999876654 8999999887766
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------------------cCCCCC
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------------------RNVPEG 245 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------------------~~~~~~ 245 (282)
.++...|+++|++++.+++.++.++.+. +|++++++||++.|++..... ...+..
T Consensus 147 ---~~~~~~y~~~k~a~~~~~~~l~~~~~~~--~i~v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (258)
T PRK12429 147 ---SAGKAAYVSAKHGLIGLTKVVALEGATH--GVTVNAICPGYVDTPLVRKQIPDLAKERGISEEEVLEDVLLPLVPQK 221 (258)
T ss_pred ---CCCcchhHHHHHHHHHHHHHHHHHhccc--CeEEEEEecCCCcchhhhhhhhhhccccCCChHHHHHHHHhccCCcc
Confidence 5677899999999999999999999877 899999999999998754211 111234
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
...+++++++.+++++.......+|+.+.+|+++.
T Consensus 222 ~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~ 256 (258)
T PRK12429 222 RFTTVEEIADYALFLASFAAKGVTGQAWVVDGGWT 256 (258)
T ss_pred ccCCHHHHHHHHHHHcCccccCccCCeEEeCCCEe
Confidence 56789999999999998777788999999999864
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=237.54 Aligned_cols=237 Identities=27% Similarity=0.373 Sum_probs=202.4
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEe-ecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT-CRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~-~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|++++|++|||||+++||.+++++|+++|++ |++. +|+.+..+...+.+...+.++.++.+|++|++++.++++.+.
T Consensus 1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~~--v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (247)
T PRK05565 1 MKLMGKVAIVTGASGGIGRAIAELLAKEGAK--VVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIV 78 (247)
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 5688999999999999999999999999987 7777 888776655444444445679999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+.++++|++|||+|... ..+..+.+.++++..+++|+.+++.+.+.+.+.+.+++.+ ++|++||..+
T Consensus 79 ~~~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~~v~~sS~~~ 145 (247)
T PRK05565 79 EKFGKIDILVNNAGISN-------FGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSG------VIVNISSIWG 145 (247)
T ss_pred HHhCCCCEEEECCCcCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc------EEEEECCHhh
Confidence 99999999999999874 4455667788999999999999999999999999876554 8999999887
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------CCCCCCCCChHHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------NVPEGKLFTKEFSV 254 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~~~~~~~~~~~~~a 254 (282)
..+ .+....|+.+|++++.++++++.++... ++++++++||+++|++...... ..+.....++++++
T Consensus 146 ~~~---~~~~~~y~~sK~a~~~~~~~~~~~~~~~--gi~~~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~va 220 (247)
T PRK05565 146 LIG---ASCEVLYSASKGAVNAFTKALAKELAPS--GIRVNAVAPGAIDTEMWSSFSEEDKEGLAEEIPLGRLGKPEEIA 220 (247)
T ss_pred ccC---CCCccHHHHHHHHHHHHHHHHHHHHHHc--CeEEEEEEECCccCccccccChHHHHHHHhcCCCCCCCCHHHHH
Confidence 766 4566789999999999999999999877 8999999999999987654331 12334556899999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCccc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.+++++......++|+++.+|+++.
T Consensus 221 ~~~~~l~~~~~~~~~g~~~~~~~~~~ 246 (247)
T PRK05565 221 KVVLFLASDDASYITGQIITVDGGWT 246 (247)
T ss_pred HHHHHHcCCccCCccCcEEEecCCcc
Confidence 99999999888899999999999864
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=235.98 Aligned_cols=218 Identities=15% Similarity=0.130 Sum_probs=176.2
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
+++||||++|||++++++|+++|++ |++.+|+.++++...+.. ++.++++|++|+++++++++++.+ ++|
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~--v~~~~r~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~---~id 71 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHK--VTLVGARRDDLEVAAKEL-----DVDAIVCDNTDPASLEEARGLFPH---HLD 71 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHhc-----cCcEEecCCCCHHHHHHHHHHHhh---cCc
Confidence 5899999999999999999999987 999999876655433322 367889999999999999887653 699
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCC
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRL 189 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~ 189 (282)
++|||+|....... ....++.+ +.++|++.+++|+.+++.+++.+.|.|+++ | +||++||.. .
T Consensus 72 ~lv~~ag~~~~~~~-~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--g------~Iv~isS~~-------~ 134 (223)
T PRK05884 72 TIVNVPAPSWDAGD-PRTYSLAD-TANAWRNALDATVLSAVLTVQSVGDHLRSG--G------SIISVVPEN-------P 134 (223)
T ss_pred EEEECCCccccCCC-Ccccchhc-CHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--C------eEEEEecCC-------C
Confidence 99999985321000 00112333 467899999999999999999999999643 3 899999965 2
Q ss_pred CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhcCCCCC
Q 023441 190 GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIKSHDN 269 (282)
Q Consensus 190 ~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 269 (282)
+....|+++|+++.+|+++++.|++++ +|+||+|+||+++|++.+... ..+ ..+|+++++.+.+++++....++
T Consensus 135 ~~~~~Y~asKaal~~~~~~la~e~~~~--gI~v~~v~PG~v~t~~~~~~~-~~p---~~~~~~ia~~~~~l~s~~~~~v~ 208 (223)
T PRK05884 135 PAGSAEAAIKAALSNWTAGQAAVFGTR--GITINAVACGRSVQPGYDGLS-RTP---PPVAAEIARLALFLTTPAARHIT 208 (223)
T ss_pred CCccccHHHHHHHHHHHHHHHHHhhhc--CeEEEEEecCccCchhhhhcc-CCC---CCCHHHHHHHHHHHcCchhhccC
Confidence 345789999999999999999999988 899999999999999754322 122 23899999999999998889999
Q ss_pred CceeecCCccc
Q 023441 270 GKFFAWDGQEI 280 (282)
Q Consensus 270 g~~~~~d~~~~ 280 (282)
|+.+.+||+++
T Consensus 209 G~~i~vdgg~~ 219 (223)
T PRK05884 209 GQTLHVSHGAL 219 (223)
T ss_pred CcEEEeCCCee
Confidence 99999999986
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=236.03 Aligned_cols=225 Identities=20% Similarity=0.281 Sum_probs=182.0
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC-CCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN-PNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~-~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++||++|||||++|||++++++|+++|++ |++.+|. .+..+.+.. +. .+.++.+|++|.+++.++++
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~--v~~~~~~~~~~~~~l~~---~~--~~~~~~~D~~~~~~~~~~~~---- 71 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGAN--VRFTYAGSKDAAERLAQ---ET--GATAVQTDSADRDAVIDVVR---- 71 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEecCCCHHHHHHHHH---Hh--CCeEEecCCCCHHHHHHHHH----
Confidence 467999999999999999999999999987 7776653 333322211 11 35678999999998877765
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|++|||+|... ..+..+.+.++|++.+++|+.+++.+++.+.+.+.+. + ++|++||..+.
T Consensus 72 ~~~~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--g------~iv~isS~~~~ 136 (237)
T PRK12742 72 KSGALDILVVNAGIAV-------FGDALELDADDIDRLFKINIHAPYHASVEAARQMPEG--G------RIIIIGSVNGD 136 (237)
T ss_pred HhCCCcEEEECCCCCC-------CCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcC--C------eEEEEeccccc
Confidence 3578999999999864 3344566788999999999999999999999988643 2 89999998764
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-------cCCCCCCCCChHHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-------RNVPEGKLFTKEFSVQK 256 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-------~~~~~~~~~~~~~~a~~ 256 (282)
. .+.++...|+++|++++.+++.++.++.+. +|+|++|+||+++|++..... ...+..+..+|+++++.
T Consensus 137 ~--~~~~~~~~Y~~sKaa~~~~~~~la~~~~~~--gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~ 212 (237)
T PRK12742 137 R--MPVAGMAAYAASKSALQGMARGLARDFGPR--GITINVVQPGPIDTDANPANGPMKDMMHSFMAIKRHGRPEEVAGM 212 (237)
T ss_pred c--CCCCCCcchHHhHHHHHHHHHHHHHHHhhh--CeEEEEEecCcccCCccccccHHHHHHHhcCCCCCCCCHHHHHHH
Confidence 2 124677899999999999999999999888 899999999999999854321 12234566799999999
Q ss_pred HHHHHhhcCCCCCCceeecCCcc
Q 023441 257 LLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 257 ~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+.+++++....++|+.+.+||++
T Consensus 213 ~~~l~s~~~~~~~G~~~~~dgg~ 235 (237)
T PRK12742 213 VAWLAGPEASFVTGAMHTIDGAF 235 (237)
T ss_pred HHHHcCcccCcccCCEEEeCCCc
Confidence 99999988889999999999985
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=247.33 Aligned_cols=237 Identities=19% Similarity=0.277 Sum_probs=187.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcC-CCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKN-DKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G-~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++|+++||||++|||+++|++|+++| ++ |++++|+.++.+++.+.+...+.++.++.+|++|.++++++++++.+.+
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~--V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 79 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWH--VIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESG 79 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCE--EEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999 76 9999999877665544444345578899999999999999999999989
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
+++|++|||||+.. +..+..+.+.++|+..+++|+.+++.+++.++|.|.+++.+ .++||++||..+...
T Consensus 80 ~~iD~lI~nAG~~~------~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~----~g~IV~vsS~~~~~~ 149 (314)
T TIGR01289 80 RPLDALVCNAAVYF------PTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNK----DKRLIIVGSITGNTN 149 (314)
T ss_pred CCCCEEEECCCccc------cCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCC----CCeEEEEecCccccc
Confidence 99999999999753 12223355778999999999999999999999999876311 139999999876421
Q ss_pred C------------------------------CCCCCcccchhhHHHHHHHHHHHHHHhc-cCCCCeEEEEEecccc-cCC
Q 023441 186 D------------------------------NRLGGWHSYRASKAALNQLTKSVSVEFG-RKKDPVICILLHPGTV-DTD 233 (282)
Q Consensus 186 ~------------------------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~-~~~~~i~v~~i~Pg~v-~t~ 233 (282)
. .+..++..|++||+++..+++.+++++. +. +|++++|+||++ +|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~--gi~v~~v~PG~v~~T~ 227 (314)
T TIGR01289 150 TLAGNVPPKANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDET--GITFASLYPGCIADTG 227 (314)
T ss_pred cCCCcCCCcccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCC--CeEEEEecCCcccCCc
Confidence 0 1123457799999999999999999985 34 799999999999 699
Q ss_pred CCccccc----------CCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 234 LSRPFQR----------NVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 234 ~~~~~~~----------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
+.+.... ........+|++.++.++.++.+.....+|.+|.+++
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~ 281 (314)
T TIGR01289 228 LFREHVPLFRTLFPPFQKYITKGYVSEEEAGERLAQVVSDPKLKKSGVYWSWGN 281 (314)
T ss_pred ccccccHHHHHHHHHHHHHHhccccchhhhhhhhHHhhcCcccCCCceeeecCC
Confidence 8653211 0011235689999999999888766567899887654
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=240.55 Aligned_cols=238 Identities=21% Similarity=0.293 Sum_probs=198.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC--CCceeEEEeeCCChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF--PERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~--~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
+++++|++|||||+++||.+++++|+++|++ |++++|+.+..+...+.+... +.++.++++|++|+++++++++++
T Consensus 3 ~~~~~k~vlItGasg~IG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (276)
T PRK05875 3 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGAA--VMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAA 80 (276)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999987 999999876655433333222 357899999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++++++|++|||+|... ...+..+.+.+++..++++|+.+++.+++.+.+.+.+++.+ +|+++||..
T Consensus 81 ~~~~~~~d~li~~ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g------~iv~~sS~~ 148 (276)
T PRK05875 81 TAWHGRLHGVVHCAGGSE------TIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGG------SFVGISSIA 148 (276)
T ss_pred HHHcCCCCEEEECCCccc------CCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc------EEEEEechh
Confidence 999999999999999753 12445566778899999999999999999999998766554 899999988
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------CCCCCCCCChH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------NVPEGKLFTKE 251 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------~~~~~~~~~~~ 251 (282)
+..+ .+....|+++|++++.+++.++.++... +|++++|+||+++|++...... ..+......++
T Consensus 149 ~~~~---~~~~~~Y~~sK~a~~~~~~~~~~~~~~~--~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (276)
T PRK05875 149 ASNT---HRWFGAYGVTKSAVDHLMKLAADELGPS--WVRVNSIRPGLIRTDLVAPITESPELSADYRACTPLPRVGEVE 223 (276)
T ss_pred hcCC---CCCCcchHHHHHHHHHHHHHHHHHhccc--CeEEEEEecCccCCccccccccCHHHHHHHHcCCCCCCCcCHH
Confidence 7655 4566889999999999999999999887 8999999999999998653221 22334456899
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++++.+.++++.....++|+.+.+++++.
T Consensus 224 dva~~~~~l~~~~~~~~~g~~~~~~~g~~ 252 (276)
T PRK05875 224 DVANLAMFLLSDAASWITGQVINVDGGHM 252 (276)
T ss_pred HHHHHHHHHcCchhcCcCCCEEEECCCee
Confidence 99999999998877788999999998865
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=236.69 Aligned_cols=240 Identities=18% Similarity=0.195 Sum_probs=196.5
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC-cccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN-GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~-~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||||+++||.+++++|+++|++ |++++|+.. ..+...+.++..+.++.++.+|++|++++.++++++.+.++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~--vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFD--LAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWG 79 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCE--EEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 479999999999999999999999987 888888754 32333333333456899999999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++|||+|.... ...+..+.+.+.+++.+++|+.+++.+++.+.+.|.++..+.......++++||..+..+
T Consensus 80 ~id~vi~~ag~~~~-----~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~- 153 (256)
T PRK12745 80 RIDCLVNNAGVGVK-----VRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMV- 153 (256)
T ss_pred CCCEEEECCccCCC-----CCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccC-
Confidence 99999999997631 123456677889999999999999999999999998765432222358999999887766
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---------CCCCCCCCChHHHHHHH
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR---------NVPEGKLFTKEFSVQKL 257 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---------~~~~~~~~~~~~~a~~~ 257 (282)
.++...|+++|++++.++++++.++.++ ++++++++||++.|++...... ..+...+..|+++++.+
T Consensus 154 --~~~~~~Y~~sK~a~~~~~~~l~~~~~~~--gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~i 229 (256)
T PRK12745 154 --SPNRGEYCISKAGLSMAAQLFAARLAEE--GIGVYEVRPGLIKTDMTAPVTAKYDALIAKGLVPMPRWGEPEDVARAV 229 (256)
T ss_pred --CCCCcccHHHHHHHHHHHHHHHHHHHHh--CCEEEEEecCCCcCccccccchhHHhhhhhcCCCcCCCcCHHHHHHHH
Confidence 4566789999999999999999999887 8999999999999987653211 23444566899999999
Q ss_pred HHHHhhcCCCCCCceeecCCcc
Q 023441 258 LNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 258 ~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.+++.......+|..+.+||+.
T Consensus 230 ~~l~~~~~~~~~G~~~~i~gg~ 251 (256)
T PRK12745 230 AALASGDLPYSTGQAIHVDGGL 251 (256)
T ss_pred HHHhCCcccccCCCEEEECCCe
Confidence 9999877778899999999875
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=238.10 Aligned_cols=232 Identities=24% Similarity=0.324 Sum_probs=192.8
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++||+++||||++|||.+++++|+++|++ |++++|+....+...+.. ...++++|++|+++++++++++.+.+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~--v~~~~r~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGAT--VVVGDIDPEAGKAAADEV-----GGLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHc-----CCcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 67999999999999999999999999988 999999876654433322 12688999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
+++|++|||+|.... ...+..+.+.+.+++.+++|+.+++.+++.+.|.+++++.+ +++++||..+..+
T Consensus 78 ~~id~vi~~ag~~~~-----~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g------~iv~~sS~~~~~g 146 (255)
T PRK06057 78 GSVDIAFNNAGISPP-----EDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKG------SIINTASFVAVMG 146 (255)
T ss_pred CCCCEEEECCCcCCC-----CCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCc------EEEEEcchhhccC
Confidence 999999999997631 02344566778899999999999999999999999876554 8999999776654
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-----------CCCCCCCCChHHHH
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-----------NVPEGKLFTKEFSV 254 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-----------~~~~~~~~~~~~~a 254 (282)
. .++...|+++|+++..+++.++.++.+. ++++++|+||+++|++.+.... ..+.....+|++++
T Consensus 147 ~--~~~~~~Y~~sKaal~~~~~~l~~~~~~~--gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 222 (255)
T PRK06057 147 S--ATSQISYTASKGGVLAMSRELGVQFARQ--GIRVNALCPGPVNTPLLQELFAKDPERAARRLVHVPMGRFAEPEEIA 222 (255)
T ss_pred C--CCCCcchHHHHHHHHHHHHHHHHHHHhh--CcEEEEEeeCCcCCchhhhhccCCHHHHHHHHhcCCCCCCcCHHHHH
Confidence 2 1355689999999999999999999988 8999999999999998653321 12334567899999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCcc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+.+++++.+.....+|..+.+|++.
T Consensus 223 ~~~~~l~~~~~~~~~g~~~~~~~g~ 247 (255)
T PRK06057 223 AAVAFLASDDASFITASTFLVDGGI 247 (255)
T ss_pred HHHHHHhCccccCccCcEEEECCCe
Confidence 9999999888889999999999875
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=247.23 Aligned_cols=217 Identities=21% Similarity=0.264 Sum_probs=173.1
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc-CC-CceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR-FP-ERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~-~~-~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
..|++++||||++|||+++|++|+++|++ |++++|++++++++.+.+.+ ++ .++..+.+|+++ ++.+.++++.+
T Consensus 51 ~~g~~~lITGAs~GIG~alA~~La~~G~~--Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~l~~ 126 (320)
T PLN02780 51 KYGSWALVTGPTDGIGKGFAFQLARKGLN--LVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG--DIDEGVKRIKE 126 (320)
T ss_pred ccCCEEEEeCCCcHHHHHHHHHHHHCCCC--EEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC--CcHHHHHHHHH
Confidence 46999999999999999999999999998 99999999887765544432 22 478889999995 23344444444
Q ss_pred HcC--CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 104 KYG--SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 104 ~~~--~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++ ++|++|||||.... ...+..+.+.+++++.+++|+.+++.+++.++|.|.+++.| .||++||..
T Consensus 127 ~~~~~didilVnnAG~~~~-----~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g------~IV~iSS~a 195 (320)
T PLN02780 127 TIEGLDVGVLINNVGVSYP-----YARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKG------AIINIGSGA 195 (320)
T ss_pred HhcCCCccEEEEecCcCCC-----CCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCc------EEEEEechh
Confidence 444 46799999998631 01345667788999999999999999999999999887665 999999988
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 261 (282)
+... ++.+....|++||+++++|+++++.|+++. +|+|++|+||+++|++.+.... .....+|+++|+.++..+
T Consensus 196 ~~~~-~~~p~~~~Y~aSKaal~~~~~~L~~El~~~--gI~V~~v~PG~v~T~~~~~~~~---~~~~~~p~~~A~~~~~~~ 269 (320)
T PLN02780 196 AIVI-PSDPLYAVYAATKAYIDQFSRCLYVEYKKS--GIDVQCQVPLYVATKMASIRRS---SFLVPSSDGYARAALRWV 269 (320)
T ss_pred hccC-CCCccchHHHHHHHHHHHHHHHHHHHHhcc--CeEEEEEeeCceecCcccccCC---CCCCCCHHHHHHHHHHHh
Confidence 7641 113567899999999999999999999988 8999999999999998663211 112468999999999988
Q ss_pred hh
Q 023441 262 NN 263 (282)
Q Consensus 262 ~~ 263 (282)
..
T Consensus 270 ~~ 271 (320)
T PLN02780 270 GY 271 (320)
T ss_pred CC
Confidence 53
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=238.07 Aligned_cols=216 Identities=19% Similarity=0.248 Sum_probs=181.3
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
+|+++||||++|||.+++++|+++|++ |++++|+.+.++...+.+...+ ++.++++|++|++++.++++++.+++++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~--v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGAT--LGLVARRTDALQAFAARLPKAA-RVSVYAADVRDADALAAAAADFIAAHGL 78 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHhcccCC-eeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 579999999999999999999999987 9999999877655444443323 7899999999999999999999999999
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++|||+|... ......+.+.++++..+++|+.+++.+++.+.|.|.+++.+ +||++||..+..+
T Consensus 79 id~lv~~ag~~~------~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~------~iv~isS~~~~~~-- 144 (257)
T PRK07024 79 PDVVIANAGISV------GTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRG------TLVGIASVAGVRG-- 144 (257)
T ss_pred CCEEEECCCcCC------CccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCC------EEEEEechhhcCC--
Confidence 999999999864 11222335678899999999999999999999999877654 8999999988776
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhcC
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 265 (282)
.+....|+++|++++.++++++.|+.+. ++++++++||+++|++..... .+.....+|+++++.++..+....
T Consensus 145 -~~~~~~Y~asK~a~~~~~~~l~~e~~~~--gi~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~~a~~~~~~l~~~~ 217 (257)
T PRK07024 145 -LPGAGAYSASKAAAIKYLESLRVELRPA--GVRVVTIAPGYIRTPMTAHNP--YPMPFLMDADRFAARAARAIARGR 217 (257)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHhhcc--CcEEEEEecCCCcCchhhcCC--CCCCCccCHHHHHHHHHHHHhCCC
Confidence 5677899999999999999999999887 899999999999999765322 122234689999999999997543
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=246.76 Aligned_cols=238 Identities=21% Similarity=0.313 Sum_probs=185.0
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc-cC-CCceeEEEeeCCChhHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN-RF-PERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~-~~-~~~v~~~~~Dls~~~~~~~~~ 98 (282)
....+++||+++||||++|||+++|++|+++|++ |++++|+.++.++..+.+. .. +.++.+++||++|.+++++++
T Consensus 7 ~~~~~l~gk~~lITGas~GIG~~~a~~La~~G~~--Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~ 84 (313)
T PRK05854 7 ITVPDLSGKRAVVTGASDGLGLGLARRLAAAGAE--VILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALG 84 (313)
T ss_pred ccCcccCCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHH
Confidence 3446789999999999999999999999999987 9999999887766444332 22 247899999999999999999
Q ss_pred HHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 99 KSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
+++.++++++|+||||||... .+..+.+.++++..+++|+.+++.+++.++|.|.++ .+ +||++|
T Consensus 85 ~~~~~~~~~iD~li~nAG~~~--------~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~-~~------riv~vs 149 (313)
T PRK05854 85 EQLRAEGRPIHLLINNAGVMT--------PPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG-RA------RVTSQS 149 (313)
T ss_pred HHHHHhCCCccEEEECCcccc--------CCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC-CC------CeEEEe
Confidence 999999999999999999864 122345678899999999999999999999999765 22 899999
Q ss_pred ccccccCC---------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---CCC---
Q 023441 179 ARVGSIGD---------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR---NVP--- 243 (282)
Q Consensus 179 s~~~~~~~---------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---~~~--- 243 (282)
|..+..+. .++++...|+.||+++..|++.+++++...+.+|+||+++||++.|++...... ..+
T Consensus 150 S~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~ 229 (313)
T PRK05854 150 SIAARRGAINWDDLNWERSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLLAARPEVGRDKDTLM 229 (313)
T ss_pred chhhcCCCcCcccccccccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCccccccccccchhHHH
Confidence 98765431 123456789999999999999999876543448999999999999998643110 000
Q ss_pred ----------CCCCCChHHHHHHHHHHHhhcCCCCCCceeecC
Q 023441 244 ----------EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWD 276 (282)
Q Consensus 244 ----------~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d 276 (282)
.....++++.+...+++...... .+|.+|..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~ga~~~l~~a~~~~~-~~g~~~~~~ 271 (313)
T PRK05854 230 VRLIRSLSARGFLVGTVESAILPALYAATSPDA-EGGAFYGPR 271 (313)
T ss_pred HHHHHHHhhcccccCCHHHHHHHhhheeeCCCC-CCCcEECCC
Confidence 01234778888888777754332 357777644
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=234.87 Aligned_cols=232 Identities=22% Similarity=0.313 Sum_probs=195.6
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec-CCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-NPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r-~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
|++|||||+++||++++++|+++|++ |++..| +.+..+...+.....+.++.++.+|++|+++++++++++.+.+++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYR--VAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGP 78 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 78999999999999999999999987 888777 444443333333333567999999999999999999999999999
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++|||+|... ..+..+.+.+.+++.+++|+.+++.+++.+.+.+++.+.+ +++++||..+..+
T Consensus 79 id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~iv~iss~~~~~~-- 143 (242)
T TIGR01829 79 IDVLVNNAGITR-------DATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWG------RIINISSVNGQKG-- 143 (242)
T ss_pred CcEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------EEEEEcchhhcCC--
Confidence 999999999864 3455667788999999999999999999999999876554 8999999887766
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHHHHHHHH
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFSVQKLLN 259 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~a~~~~~ 259 (282)
..++..|+++|++++.++++++.++.+. +++++++.||++.|++..... ...+.....+|+++++.+.+
T Consensus 144 -~~~~~~y~~sk~a~~~~~~~la~~~~~~--~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 220 (242)
T TIGR01829 144 -QFGQTNYSAAKAGMIGFTKALAQEGATK--GVTVNTISPGYIATDMVMAMREDVLNSIVAQIPVGRLGRPEEIAAAVAF 220 (242)
T ss_pred -CCCcchhHHHHHHHHHHHHHHHHHhhhh--CeEEEEEeeCCCcCccccccchHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 5667899999999999999999999887 899999999999999765432 12345567799999999999
Q ss_pred HHhhcCCCCCCceeecCCccc
Q 023441 260 IINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 260 ~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++.+....++|+.+.+||+.+
T Consensus 221 l~~~~~~~~~G~~~~~~gg~~ 241 (242)
T TIGR01829 221 LASEEAGYITGATLSINGGLY 241 (242)
T ss_pred HcCchhcCccCCEEEecCCcc
Confidence 888777789999999999864
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=235.31 Aligned_cols=231 Identities=23% Similarity=0.314 Sum_probs=194.7
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc-ccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG-ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~-~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
|+++||||+++||+++|++|+++|++ |++.+|+..+ .+...+.....+.++.++++|++|.++++++++.+.+++++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~--vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 80 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYR--VIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGP 80 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCE--EEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999987 9999998642 11122222233457999999999999999999999999999
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++|||+|... ..+..+.+.+.|+..+++|+.+++++++.+.+.+.+++.+ ++|++||..+..+
T Consensus 81 id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~iss~~~~~~-- 145 (245)
T PRK12824 81 VDILVNNAGITR-------DSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYG------RIINISSVNGLKG-- 145 (245)
T ss_pred CCEEEECCCCCC-------CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCe------EEEEECChhhccC--
Confidence 999999999864 4455667789999999999999999999999999876554 9999999887755
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHHHHHHHH
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFSVQKLLN 259 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~a~~~~~ 259 (282)
.++...|+++|++++++++.++.++.+. +++++.++||++.|++.+... ...+.....+++++++.+.+
T Consensus 146 -~~~~~~Y~~sK~a~~~~~~~l~~~~~~~--~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~ 222 (245)
T PRK12824 146 -QFGQTNYSAAKAGMIGFTKALASEGARY--GITVNCIAPGYIATPMVEQMGPEVLQSIVNQIPMKRLGTPEEIAAAVAF 222 (245)
T ss_pred -CCCChHHHHHHHHHHHHHHHHHHHHHHh--CeEEEEEEEcccCCcchhhcCHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence 5677899999999999999999999887 899999999999999765432 22344566799999999999
Q ss_pred HHhhcCCCCCCceeecCCcc
Q 023441 260 IINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 260 ~~~~~~~~~~g~~~~~d~~~ 279 (282)
++......++|+.+.+|++.
T Consensus 223 l~~~~~~~~~G~~~~~~~g~ 242 (245)
T PRK12824 223 LVSEAAGFITGETISINGGL 242 (245)
T ss_pred HcCccccCccCcEEEECCCe
Confidence 99777778999999999885
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=236.70 Aligned_cols=215 Identities=16% Similarity=0.185 Sum_probs=176.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcC-CCcEEEEeecCCCc-ccccccccccCC-CceeEEEeeCCChhHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKN-DKGCVIATCRNPNG-ATGLLDLKNRFP-ERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G-~~~~vi~~~r~~~~-~~~~~~~~~~~~-~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++|+++||||++|||+++|++|+++| ++ |++.+|+.++ ++.+.+.+...+ .+++++++|++|.++++++++++.+
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~--V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPAR--VVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCe--EEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 57899999999999999999999996 66 9999999886 555444443333 3799999999999999999999886
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++++|++|||+|... .......+.+...+.+++|+.+++.+++.+.|.|.+++.+ +|+++||..+.
T Consensus 85 -~g~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~------~iv~isS~~g~ 150 (253)
T PRK07904 85 -GGDVDVAIVAFGLLG-------DAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFG------QIIAMSSVAGE 150 (253)
T ss_pred -cCCCCEEEEeeecCC-------chhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCc------eEEEEechhhc
Confidence 589999999999864 1111112334556789999999999999999999987655 99999999876
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhh
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
.+ .++...|++||+++.+|+++++.|+.++ +|++++++||+++|++.+..... ....+|+++|+.++..+..
T Consensus 151 ~~---~~~~~~Y~~sKaa~~~~~~~l~~el~~~--~i~v~~v~Pg~v~t~~~~~~~~~---~~~~~~~~~A~~i~~~~~~ 222 (253)
T PRK07904 151 RV---RRSNFVYGSTKAGLDGFYLGLGEALREY--GVRVLVVRPGQVRTRMSAHAKEA---PLTVDKEDVAKLAVTAVAK 222 (253)
T ss_pred CC---CCCCcchHHHHHHHHHHHHHHHHHHhhc--CCEEEEEeeCceecchhccCCCC---CCCCCHHHHHHHHHHHHHc
Confidence 54 4566789999999999999999999988 89999999999999987764322 2346999999999999976
Q ss_pred cC
Q 023441 264 IK 265 (282)
Q Consensus 264 ~~ 265 (282)
..
T Consensus 223 ~~ 224 (253)
T PRK07904 223 GK 224 (253)
T ss_pred CC
Confidence 54
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=234.49 Aligned_cols=232 Identities=22% Similarity=0.286 Sum_probs=195.9
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC-CCceeEEEeeCC--ChhHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-PERLDVLQLDLT--VESTIEASAKSI 101 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~-~~~v~~~~~Dls--~~~~~~~~~~~~ 101 (282)
.+++|+++||||+++||.+++++|+++|++ |++++|+.++.+...+.+.+. +.++.++.+|++ +.++++++++.+
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~--Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGAT--VILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCc--EEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHH
Confidence 568999999999999999999999999987 999999987665544444333 346788888886 789999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+.++++|++|||||... +..+..+.+.+.+++.+++|+.+.+++++.+.+.|.+++.+ +|+++||..
T Consensus 87 ~~~~~~id~vi~~Ag~~~------~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~------~iv~~ss~~ 154 (247)
T PRK08945 87 EEQFGRLDGVLHNAGLLG------ELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAA------SLVFTSSSV 154 (247)
T ss_pred HHHhCCCCEEEECCcccC------CCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCC------EEEEEccHh
Confidence 999999999999999864 23445566778899999999999999999999999877654 899999988
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 261 (282)
+..+ .+....|+++|++++.+++.++.++... ++++++++||+++|++.....+........+|+++++.+.+++
T Consensus 155 ~~~~---~~~~~~Y~~sK~a~~~~~~~~~~~~~~~--~i~~~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (247)
T PRK08945 155 GRQG---RANWGAYAVSKFATEGMMQVLADEYQGT--NLRVNCINPGGTRTAMRASAFPGEDPQKLKTPEDIMPLYLYLM 229 (247)
T ss_pred hcCC---CCCCcccHHHHHHHHHHHHHHHHHhccc--CEEEEEEecCCccCcchhhhcCcccccCCCCHHHHHHHHHHHh
Confidence 7766 5667799999999999999999999876 8999999999999997654444344456789999999999999
Q ss_pred hhcCCCCCCceeec
Q 023441 262 NNIKSHDNGKFFAW 275 (282)
Q Consensus 262 ~~~~~~~~g~~~~~ 275 (282)
+.....++|+.+..
T Consensus 230 ~~~~~~~~g~~~~~ 243 (247)
T PRK08945 230 GDDSRRKNGQSFDA 243 (247)
T ss_pred CccccccCCeEEeC
Confidence 88788899998764
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=234.97 Aligned_cols=238 Identities=25% Similarity=0.370 Sum_probs=202.2
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++++|+++||||+++||.+++++|+++|++ |++++|+.++.....+.+.+.+.++.++.+|++|.++++++++++.++
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAE--VIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999987 999999977665544444444567999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc-
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS- 183 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~- 183 (282)
++++|++|||+|... ..+..+.+.+++++.++.|+.+++.+++.+.+.+.+++.+ +++++||..+.
T Consensus 81 ~~~~d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~ii~~ss~~~~~ 147 (251)
T PRK12826 81 FGRLDILVANAGIFP-------LTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGG------RIVLTSSVAGPR 147 (251)
T ss_pred hCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc------EEEEEechHhhc
Confidence 999999999999875 4455667788999999999999999999999998876543 89999998776
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---------CCCCCCCCChHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR---------NVPEGKLFTKEFSV 254 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---------~~~~~~~~~~~~~a 254 (282)
.+ .+....|+++|++++.+++.++.++.+. +++++.+.||++.|+....... ..+.....++++++
T Consensus 148 ~~---~~~~~~y~~sK~a~~~~~~~~~~~~~~~--~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva 222 (251)
T PRK12826 148 VG---YPGLAHYAASKAGLVGFTRALALELAAR--NITVNSVHPGGVDTPMAGNLGDAQWAEAIAAAIPLGRLGEPEDIA 222 (251)
T ss_pred cC---CCCccHHHHHHHHHHHHHHHHHHHHHHc--CeEEEEEeeCCCCcchhhhcCchHHHHHHHhcCCCCCCcCHHHHH
Confidence 44 5667789999999999999999999877 8999999999999987654322 22444667899999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
+.++.++.......+|+.+.++++.+.|
T Consensus 223 ~~~~~l~~~~~~~~~g~~~~~~~g~~~~ 250 (251)
T PRK12826 223 AAVLFLASDEARYITGQTLPVDGGATLP 250 (251)
T ss_pred HHHHHHhCccccCcCCcEEEECCCccCC
Confidence 9999988777778899999999998875
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=235.57 Aligned_cols=233 Identities=21% Similarity=0.237 Sum_probs=187.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC-CCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN-PNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~-~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
++..+|++|||||++|||++++++|+++|++ |++.++. .+..+.+...+...+.++.++++|++|.+++.++++++.
T Consensus 5 ~~~~~k~vlItGas~giG~~la~~l~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 82 (258)
T PRK09134 5 SMAAPRAALVTGAARRIGRAIALDLAAHGFD--VAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARAS 82 (258)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 4457899999999999999999999999987 7666554 344433444333345678999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+.++++|++|||+|... ..+..+.+.+.+++.+++|+.+++.+++.+.+.+.++..+ .+++++|..+
T Consensus 83 ~~~~~iD~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~~~s~~~ 149 (258)
T PRK09134 83 AALGPITLLVNNASLFE-------YDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARG------LVVNMIDQRV 149 (258)
T ss_pred HHcCCCCEEEECCcCCC-------CCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc------eEEEECchhh
Confidence 99999999999999864 3455667788999999999999999999999998765444 8898888655
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc---c---ccCCCCCCCCChHHHHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP---F---QRNVPEGKLFTKEFSVQK 256 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~---~---~~~~~~~~~~~~~~~a~~ 256 (282)
..+ .+.+..|+++|++++.++++++.++.+ ++++++++||++.|+.... + ....+.....+++++|+.
T Consensus 150 ~~~---~p~~~~Y~~sK~a~~~~~~~la~~~~~---~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~ 223 (258)
T PRK09134 150 WNL---NPDFLSYTLSKAALWTATRTLAQALAP---RIRVNAIGPGPTLPSGRQSPEDFARQHAATPLGRGSTPEEIAAA 223 (258)
T ss_pred cCC---CCCchHHHHHHHHHHHHHHHHHHHhcC---CcEEEEeecccccCCcccChHHHHHHHhcCCCCCCcCHHHHHHH
Confidence 433 455678999999999999999999865 4999999999998865321 1 112334456789999999
Q ss_pred HHHHHhhcCCCCCCceeecCCcc
Q 023441 257 LLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 257 ~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++++++. ..++|+.+.+||++
T Consensus 224 ~~~~~~~--~~~~g~~~~i~gg~ 244 (258)
T PRK09134 224 VRYLLDA--PSVTGQMIAVDGGQ 244 (258)
T ss_pred HHHHhcC--CCcCCCEEEECCCe
Confidence 9999974 56899999999865
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=239.80 Aligned_cols=228 Identities=19% Similarity=0.213 Sum_probs=186.9
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++++|++|||||++|||++++++|+++|++ |++++|+.+.++...+.+...+.++.++++|++|.++++++++++.+.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMK--LVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCE--EEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999987 999999877666554444444567899999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||... ..+..+.+.+.|+..+++|+.+++++++.+.|.|.++........+++|++||..+..
T Consensus 81 ~g~id~vi~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~ 153 (287)
T PRK06194 81 FGAVHLLFNNAGVGA-------GGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL 153 (287)
T ss_pred cCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc
Confidence 999999999999975 4556667788999999999999999999999998876431111123899999998876
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCC---------------------
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVP--------------------- 243 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~--------------------- 243 (282)
+ .+....|+++|++++.|+++++.++.....+|++++++||++.|++.+....+..
T Consensus 154 ~---~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (287)
T PRK06194 154 A---PPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIWQSERNRPADLANTAPPTRSQLIAQAMSQK 230 (287)
T ss_pred C---CCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCccccccccCchhcccCccccchhhHHHHHHHh
Confidence 6 4667889999999999999999999876668999999999999998754321100
Q ss_pred --CCCCCChHHHHHHHHHHHhhc
Q 023441 244 --EGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 244 --~~~~~~~~~~a~~~~~~~~~~ 264 (282)
.....+++++|+.++..+...
T Consensus 231 ~~~~~~~s~~dva~~i~~~~~~~ 253 (287)
T PRK06194 231 AVGSGKVTAEEVAQLVFDAIRAG 253 (287)
T ss_pred hhhccCCCHHHHHHHHHHHHHcC
Confidence 012358999999999988643
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=237.54 Aligned_cols=216 Identities=19% Similarity=0.262 Sum_probs=186.4
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|+++||||++|||++++++|+++|++ |++.+|+.++.+.....+...+.++.++++|++|++++.++++++.++++++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWR--LALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 57999999999999999999999988 9999999877766555555556789999999999999999999999999999
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|++|||+|... .....+.+.++++..+++|+.+++.+++.+.|.|.+++.+ +||++||..+..+
T Consensus 79 d~lI~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~iv~vsS~~~~~~--- 142 (270)
T PRK05650 79 DVIVNNAGVAS-------GGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSG------RIVNIASMAGLMQ--- 142 (270)
T ss_pred CEEEECCCCCC-------CCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCC------EEEEECChhhcCC---
Confidence 99999999875 4556677788999999999999999999999999876544 8999999988766
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCC----------CCCCCChHHHHHHHH
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVP----------EGKLFTKEFSVQKLL 258 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~----------~~~~~~~~~~a~~~~ 258 (282)
.++...|+++|+++++++++++.|+.+. +|++++|+||+++|++.+......+ .....+++++|+.++
T Consensus 143 ~~~~~~Y~~sKaa~~~~~~~l~~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~i~ 220 (270)
T PRK05650 143 GPAMSSYNVAKAGVVALSETLLVELADD--EIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKLLEKSPITAADIADYIY 220 (270)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhccc--CcEEEEEecCccccCcccccccCchhHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 6778899999999999999999999888 8999999999999998765432222 123468999999999
Q ss_pred HHHhhc
Q 023441 259 NIINNI 264 (282)
Q Consensus 259 ~~~~~~ 264 (282)
..+...
T Consensus 221 ~~l~~~ 226 (270)
T PRK05650 221 QQVAKG 226 (270)
T ss_pred HHHhCC
Confidence 999764
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=220.35 Aligned_cols=245 Identities=22% Similarity=0.278 Sum_probs=204.4
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
.+..+.+|-+.+||||.+|+|++.|++|+++|+. |++.+....+.....+++ +.++.|.++|++++++++.+++.
T Consensus 2 sa~rs~kglvalvtggasglg~ataerlakqgas--v~lldlp~skg~~vakel---g~~~vf~padvtsekdv~aala~ 76 (260)
T KOG1199|consen 2 SALRSTKGLVALVTGGASGLGKATAERLAKQGAS--VALLDLPQSKGADVAKEL---GGKVVFTPADVTSEKDVRAALAK 76 (260)
T ss_pred chhhhhcCeeEEeecCcccccHHHHHHHHhcCce--EEEEeCCcccchHHHHHh---CCceEEeccccCcHHHHHHHHHH
Confidence 3456788999999999999999999999999999 999988877766554444 78999999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
++.+||++|.+|||||+...-.... ...-...+-++++..+++|+.|+|++++.-.-.|..+.....+.-+.|||..|+
T Consensus 77 ak~kfgrld~~vncagia~a~ktyn-~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasv 155 (260)
T KOG1199|consen 77 AKAKFGRLDALVNCAGIAYAFKTYN-VQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASV 155 (260)
T ss_pred HHhhccceeeeeeccceeeeeeeee-ecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeecee
Confidence 9999999999999999874110000 011223456889999999999999999999888877655555666799999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC--------CC-CCCCCChH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN--------VP-EGKLFTKE 251 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~--------~~-~~~~~~~~ 251 (282)
+++-+ ..+.++||+||.++.+++--++++++.. +||++.|.||.++||+.....+. .| +.++-.|.
T Consensus 156 aafdg---q~gqaaysaskgaivgmtlpiardla~~--gir~~tiapglf~tpllsslpekv~~fla~~ipfpsrlg~p~ 230 (260)
T KOG1199|consen 156 AAFDG---QTGQAAYSASKGAIVGMTLPIARDLAGD--GIRFNTIAPGLFDTPLLSSLPEKVKSFLAQLIPFPSRLGHPH 230 (260)
T ss_pred eeecC---ccchhhhhcccCceEeeechhhhhcccC--ceEEEeecccccCChhhhhhhHHHHHHHHHhCCCchhcCChH
Confidence 98877 6778999999999999999999999988 99999999999999987754332 12 35667899
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
|.+..+...++. ...+|..+.+||-
T Consensus 231 eyahlvqaiien--p~lngevir~dga 255 (260)
T KOG1199|consen 231 EYAHLVQAIIEN--PYLNGEVIRFDGA 255 (260)
T ss_pred HHHHHHHHHHhC--cccCCeEEEecce
Confidence 999998888876 6899999999974
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=236.46 Aligned_cols=220 Identities=25% Similarity=0.365 Sum_probs=185.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|++++|++|||||++|||.+++++|+++|++ |++++|+.+..+.....+ ..+.++.++++|++|+++++++++.+.+
T Consensus 1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 77 (263)
T PRK09072 1 MDLKDKRVLLTGASGGIGQALAEALAAAGAR--LLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARARE 77 (263)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999999999987 999999987766554444 3356899999999999999999999876
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++++|++|||+|... ..+..+.+.+++++.+++|+.+++.+++.+.+.+.+++.+ .++++||..+.
T Consensus 78 -~~~id~lv~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~------~iv~isS~~~~ 143 (263)
T PRK09072 78 -MGGINVLINNAGVNH-------FALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSA------MVVNVGSTFGS 143 (263)
T ss_pred -cCCCCEEEECCCCCC-------ccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC------EEEEecChhhC
Confidence 789999999999864 4456667788999999999999999999999999876544 89999998887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCC---CCCCCCChHHHHHHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNV---PEGKLFTKEFSVQKLLNI 260 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~---~~~~~~~~~~~a~~~~~~ 260 (282)
.+ .++...|+++|+++.+++++++.++.+. +|++++++||+++|++.+...... ......+|+++|+.++++
T Consensus 144 ~~---~~~~~~Y~~sK~a~~~~~~~l~~~~~~~--~i~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~va~~i~~~ 218 (263)
T PRK09072 144 IG---YPGYASYCASKFALRGFSEALRRELADT--GVRVLYLAPRATRTAMNSEAVQALNRALGNAMDDPEDVAAAVLQA 218 (263)
T ss_pred cC---CCCccHHHHHHHHHHHHHHHHHHHhccc--CcEEEEEecCcccccchhhhcccccccccCCCCCHHHHHHHHHHH
Confidence 66 5667889999999999999999999887 899999999999999865432211 112456899999999999
Q ss_pred HhhcC
Q 023441 261 INNIK 265 (282)
Q Consensus 261 ~~~~~ 265 (282)
+....
T Consensus 219 ~~~~~ 223 (263)
T PRK09072 219 IEKER 223 (263)
T ss_pred HhCCC
Confidence 98653
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=232.50 Aligned_cols=235 Identities=21% Similarity=0.272 Sum_probs=194.5
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC----cccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN----GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~----~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
++++++++||||+++||+++|++|+++|++ |++++|... ..+...+.....+.++.++.+|++|.+++++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGAD--VIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDA 80 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCe--EEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 367899999999999999999999999998 777665432 22223334444466899999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhh-hhhhcCCCCCccceeEEEEeec
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMS-PLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~-~~l~~~~~g~~~~~~~iv~~ss 179 (282)
+.++++++|++|||+|... ..+..+.+.+.++..+++|+.+++.+++.+. +.+++++. +++|++||
T Consensus 81 ~~~~~~~~d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~~iv~~sS 147 (249)
T PRK12827 81 GVEEFGRLDILVNNAGIAT-------DAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRG------GRIVNIAS 147 (249)
T ss_pred HHHHhCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCC------eEEEEECC
Confidence 9999999999999999875 4556677788899999999999999999999 55555443 38999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc------CCCCCCCCChHHH
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR------NVPEGKLFTKEFS 253 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~------~~~~~~~~~~~~~ 253 (282)
..+..+ .++...|+.+|++++.+++.++.++++. ++++++++||+++|++...... ..+.....+++++
T Consensus 148 ~~~~~~---~~~~~~y~~sK~a~~~~~~~l~~~~~~~--~i~~~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (249)
T PRK12827 148 VAGVRG---NRGQVNYAASKAGLIGLTKTLANELAPR--GITVNAVAPGAINTPMADNAAPTEHLLNPVPVQRLGEPDEV 222 (249)
T ss_pred chhcCC---CCCCchhHHHHHHHHHHHHHHHHHhhhh--CcEEEEEEECCcCCCcccccchHHHHHhhCCCcCCcCHHHH
Confidence 888766 4567789999999999999999999877 8999999999999998654321 2333445589999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++.+++++.+.....+|+.+.+|++.
T Consensus 223 a~~~~~l~~~~~~~~~g~~~~~~~g~ 248 (249)
T PRK12827 223 AALVAFLVSDAASYVTGQVIPVDGGF 248 (249)
T ss_pred HHHHHHHcCcccCCccCcEEEeCCCC
Confidence 99999999877788999999999874
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=262.92 Aligned_cols=223 Identities=19% Similarity=0.251 Sum_probs=191.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
..++++++|||||++|||++++++|+++|++ |++++|+.++++.+.+.++..+.++.+++||++|+++++++++++.+
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 388 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGAE--VVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRA 388 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5567899999999999999999999999998 99999998777666555555566899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++|++|++|||||+.. ..+..+.+.++++..+++|+.+++++++.+.|.|.+++.+ ++||++||..+.
T Consensus 389 ~~g~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~-----g~iv~~sS~~~~ 456 (582)
T PRK05855 389 EHGVPDIVVNNAGIGM-------AGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTG-----GHIVNVASAAAY 456 (582)
T ss_pred hcCCCcEEEECCccCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-----cEEEEECChhhc
Confidence 9999999999999975 4566677889999999999999999999999999876532 399999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-cC---------------CCCCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-RN---------------VPEGKL 247 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-~~---------------~~~~~~ 247 (282)
.+ .++...|++||+++++++++++.|++++ ||+|++|+||+++|++..... .. ......
T Consensus 457 ~~---~~~~~~Y~~sKaa~~~~~~~l~~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (582)
T PRK05855 457 AP---SRSLPAYATSKAAVLMLSECLRAELAAA--GIGVTAICPGFVDTNIVATTRFAGADAEDEARRRGRADKLYQRRG 531 (582)
T ss_pred cC---CCCCcHHHHHHHHHHHHHHHHHHHhccc--CcEEEEEEeCCCcccchhccccCCcccchhhhHHhhhhhhccccC
Confidence 66 5677899999999999999999999988 899999999999999866421 00 011223
Q ss_pred CChHHHHHHHHHHHhhcC
Q 023441 248 FTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~ 265 (282)
.+|+++|+.+++.+....
T Consensus 532 ~~p~~va~~~~~~~~~~~ 549 (582)
T PRK05855 532 YGPEKVAKAIVDAVKRNK 549 (582)
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 589999999999998644
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=239.28 Aligned_cols=213 Identities=23% Similarity=0.316 Sum_probs=179.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc-
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY- 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~- 105 (282)
.+|+++||||++|||++++++|+++|++ |++++|+.+.++.+.+ ..+.++.+|++|.++++++++++.+.+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~--Vi~~~r~~~~~~~l~~------~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 74 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWR--VFATCRKEEDVAALEA------EGLEAFQLDYAEPESIAALVAQVLELSG 74 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHH------CCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999987 9999998776543322 247889999999999999999998876
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
+++|++|||+|... .....+.+.++++..+++|+.+++.+++.++|.|.+++.| +||++||..+..+
T Consensus 75 g~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g------~iv~isS~~~~~~ 141 (277)
T PRK05993 75 GRLDALFNNGAYGQ-------PGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQG------RIVQCSSILGLVP 141 (277)
T ss_pred CCccEEEECCCcCC-------CCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCC------EEEEECChhhcCC
Confidence 68999999999875 4456667788999999999999999999999999887665 8999999988766
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC------------------------
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN------------------------ 241 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~------------------------ 241 (282)
.+....|+++|++++.|+++++.|+.+. +|++++|+||+++|++.+.....
T Consensus 142 ---~~~~~~Y~asK~a~~~~~~~l~~el~~~--gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (277)
T PRK05993 142 ---MKYRGAYNASKFAIEGLSLTLRMELQGS--GIHVSLIEPGPIETRFRANALAAFKRWIDIENSVHRAAYQQQMARLE 216 (277)
T ss_pred ---CCccchHHHHHHHHHHHHHHHHHHhhhh--CCEEEEEecCCccCchhhHHHHHHhhhhccccchhHHHHHHHHHHHH
Confidence 5667899999999999999999999988 89999999999999986532100
Q ss_pred ---CCCCCCCChHHHHHHHHHHHhhcC
Q 023441 242 ---VPEGKLFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 242 ---~~~~~~~~~~~~a~~~~~~~~~~~ 265 (282)
.+.....+|+++++.++..+....
T Consensus 217 ~~~~~~~~~~~~~~va~~i~~a~~~~~ 243 (277)
T PRK05993 217 GGGSKSRFKLGPEAVYAVLLHALTAPR 243 (277)
T ss_pred hhhhccccCCCHHHHHHHHHHHHcCCC
Confidence 011224689999999999887553
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=232.84 Aligned_cols=220 Identities=20% Similarity=0.262 Sum_probs=185.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++|+++||||+++||++++++|+++|++ |++++|+.++.+.+.+.+.+.+.++.++.+|++|++++.++++++.++++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWD--LALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999987 99999998766555444444456899999999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++|||+|... ..+..+.+.++++..+++|+.+++.+++.+.+.+.+++.+ ++|++||..+..+
T Consensus 83 ~id~lv~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~iv~isS~~~~~~- 148 (241)
T PRK07454 83 CPDVLINNAGMAY-------TGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGG------LIINVSSIAARNA- 148 (241)
T ss_pred CCCEEEECCCccC-------CCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc------EEEEEccHHhCcC-
Confidence 9999999999864 3455667778899999999999999999999999876544 8999999887655
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--cCCCCCCCCChHHHHHHHHHHHhhc
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--RNVPEGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~ 264 (282)
.+++..|+++|++++.++++++.++.+. ++++++|.||+++|++.+... .........+|+++|+.++++++..
T Consensus 149 --~~~~~~Y~~sK~~~~~~~~~~a~e~~~~--gi~v~~i~pg~i~t~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~ 224 (241)
T PRK07454 149 --FPQWGAYCVSKAALAAFTKCLAEEERSH--GIRVCTITLGAVNTPLWDTETVQADFDRSAMLSPEQVAQTILHLAQLP 224 (241)
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHhhhh--CCEEEEEecCcccCCcccccccccccccccCCCHHHHHHHHHHHHcCC
Confidence 5667899999999999999999999888 899999999999999855311 1122234579999999999999866
Q ss_pred CC
Q 023441 265 KS 266 (282)
Q Consensus 265 ~~ 266 (282)
..
T Consensus 225 ~~ 226 (241)
T PRK07454 225 PS 226 (241)
T ss_pred cc
Confidence 43
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=232.46 Aligned_cols=241 Identities=24% Similarity=0.322 Sum_probs=195.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++|++++||||++|||.+++++|+++|++ |++++|+..+.+...+.....+.++.++++|+++.++++++++.+.+
T Consensus 1 ~~~~~~~~lItG~~g~iG~~~a~~l~~~G~~--vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (253)
T PRK08217 1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGAK--LALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAE 78 (253)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999987 89999998766655554444466899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCC-CCCcccc-cccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 104 KYGSLNLLINASGILSIPNV-LQPETTL-NKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++++|++|||+|....... ..+.... .+.+.+.++..+++|+.+++.+.+.+.+.+.++..+ +.++++||..
T Consensus 79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~-----~~iv~~ss~~ 153 (253)
T PRK08217 79 DFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSK-----GVIINISSIA 153 (253)
T ss_pred HcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC-----eEEEEEcccc
Confidence 88999999999997541110 0111222 566778899999999999999999999998765322 3788888864
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------CCCCCCCCChHHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------NVPEGKLFTKEFS 253 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~~~~~~~~~~~~~ 253 (282)
. .+ .++...|+++|++++.++++++.++.+. ++++++++||+++|++.....+ ..+.....+|+++
T Consensus 154 ~-~~---~~~~~~Y~~sK~a~~~l~~~la~~~~~~--~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (253)
T PRK08217 154 R-AG---NMGQTNYSASKAGVAAMTVTWAKELARY--GIRVAAIAPGVIETEMTAAMKPEALERLEKMIPVGRLGEPEEI 227 (253)
T ss_pred c-cC---CCCCchhHHHHHHHHHHHHHHHHHHHHc--CcEEEEEeeCCCcCccccccCHHHHHHHHhcCCcCCCcCHHHH
Confidence 3 33 4567899999999999999999999887 8999999999999998654321 2233456689999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++.+.+++.. ..++|..+.+||++
T Consensus 228 a~~~~~l~~~--~~~~g~~~~~~gg~ 251 (253)
T PRK08217 228 AHTVRFIIEN--DYVTGRVLEIDGGL 251 (253)
T ss_pred HHHHHHHHcC--CCcCCcEEEeCCCc
Confidence 9999999953 57899999999986
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=242.56 Aligned_cols=231 Identities=21% Similarity=0.289 Sum_probs=183.0
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..+++||+++||||++|||++++++|+++|++ |++++|+.++.+...+.+. ++.++++|++|.++++++++++.
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~--Vv~~~R~~~~~~~~~~~l~----~v~~~~~Dl~d~~~v~~~~~~~~ 94 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAH--VIVPARRPDVAREALAGID----GVEVVMLDLADLESVRAFAERFL 94 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHhh----hCeEEEccCCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999987 9999999876654433322 37889999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+.++++|+||||||.... + ...+.+.|+..+++|+.+++.+++.+.|.+.+++.+ +||++||..+
T Consensus 95 ~~~~~iD~li~nAg~~~~--------~-~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~------~iV~vSS~~~ 159 (315)
T PRK06196 95 DSGRRIDILINNAGVMAC--------P-ETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGA------RVVALSSAGH 159 (315)
T ss_pred hcCCCCCEEEECCCCCCC--------C-CccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCC------eEEEECCHHh
Confidence 999999999999998631 1 234567899999999999999999999999876544 8999999765
Q ss_pred ccCC---------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC------------
Q 023441 183 SIGD---------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN------------ 241 (282)
Q Consensus 183 ~~~~---------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~------------ 241 (282)
..+. .+.+....|++||+++..+++.++.++.+. +|++++|+||++.|++.......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~ 237 (315)
T PRK06196 160 RRSPIRWDDPHFTRGYDKWLAYGQSKTANALFAVHLDKLGKDQ--GVRAFSVHPGGILTPLQRHLPREEQVALGWVDEHG 237 (315)
T ss_pred ccCCCCccccCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC--CcEEEEeeCCcccCCccccCChhhhhhhhhhhhhh
Confidence 3221 123456789999999999999999999877 89999999999999986543211
Q ss_pred CCC-CCCCChHHHHHHHHHHHhhcCCCCCCceeecC
Q 023441 242 VPE-GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWD 276 (282)
Q Consensus 242 ~~~-~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d 276 (282)
.+. ....+|+++|..+++++........|..+..|
T Consensus 238 ~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~g~~~~~ 273 (315)
T PRK06196 238 NPIDPGFKTPAQGAATQVWAATSPQLAGMGGLYCED 273 (315)
T ss_pred hhhhhhcCCHhHHHHHHHHHhcCCccCCCCCeEeCC
Confidence 011 13568999999999999765433333344334
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=237.26 Aligned_cols=211 Identities=23% Similarity=0.322 Sum_probs=179.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++|+++||||++|||++++++|+++|++ |++.+|+.++++.+.. ..++++++|++|.++++++++++.+.++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~--V~~~~r~~~~l~~~~~------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYT--VYGAARRVDKMEDLAS------LGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHh------CCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999988 9999998766543221 2478999999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++|||+|... ..+..+.+.++++..+++|+.+++.+++.++|.|++++.| +||++||..+..+
T Consensus 74 ~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g------~iv~isS~~~~~~- 139 (273)
T PRK06182 74 RIDVLVNNAGYGS-------YGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSG------RIINISSMGGKIY- 139 (273)
T ss_pred CCCEEEECCCcCC-------CCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCC------EEEEEcchhhcCC-
Confidence 9999999999874 4566677889999999999999999999999999877655 8999999887655
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc------------------------CC
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR------------------------NV 242 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~------------------------~~ 242 (282)
.+....|+++|+++++|+++++.|+.+. +|++++++||+++|++...... ..
T Consensus 140 --~~~~~~Y~~sKaa~~~~~~~l~~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (273)
T PRK06182 140 --TPLGAWYHATKFALEGFSDALRLEVAPF--GIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAASMRSTY 215 (273)
T ss_pred --CCCccHhHHHHHHHHHHHHHHHHHhccc--CCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHHHHHhh
Confidence 4556689999999999999999999888 8999999999999997531100 01
Q ss_pred CCCCCCChHHHHHHHHHHHhh
Q 023441 243 PEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~ 263 (282)
+.....+|+++|+.++++++.
T Consensus 216 ~~~~~~~~~~vA~~i~~~~~~ 236 (273)
T PRK06182 216 GSGRLSDPSVIADAISKAVTA 236 (273)
T ss_pred ccccCCCHHHHHHHHHHHHhC
Confidence 123556999999999999985
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=233.06 Aligned_cols=233 Identities=23% Similarity=0.325 Sum_probs=191.5
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEE-eecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIA-TCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~-~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++|+++||||+++||.++|++|+++|++ |++ ..|+.++.++..+.....+.++.++++|++|++++.++++++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~--v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~ 80 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGAL--VAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKN 80 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999987 655 47776655444433333345789999999999999999999998
Q ss_pred Hc------CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 104 KY------GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 104 ~~------~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
++ +++|++|||+|... .....+.+.+.|+..+++|+.+++++++.+.+.+... + +++++
T Consensus 81 ~~~~~~~~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~------~~v~~ 145 (254)
T PRK12746 81 ELQIRVGTSEIDILVNNAGIGT-------QGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAE--G------RVINI 145 (254)
T ss_pred HhccccCCCCccEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC--C------EEEEE
Confidence 87 47999999999764 4455667788899999999999999999999988653 2 89999
Q ss_pred eccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------CCCCCCC
Q 023441 178 SARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------NVPEGKL 247 (282)
Q Consensus 178 ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------~~~~~~~ 247 (282)
||..+..+ .++...|+++|++++.++++++.++.+. ++++++++||+++|++...... ..+....
T Consensus 146 sS~~~~~~---~~~~~~Y~~sK~a~~~~~~~~~~~~~~~--~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (254)
T PRK12746 146 SSAEVRLG---FTGSIAYGLSKGALNTMTLPLAKHLGER--GITVNTIMPGYTKTDINAKLLDDPEIRNFATNSSVFGRI 220 (254)
T ss_pred CCHHhcCC---CCCCcchHhhHHHHHHHHHHHHHHHhhc--CcEEEEEEECCccCcchhhhccChhHHHHHHhcCCcCCC
Confidence 99877655 5667889999999999999999999887 8999999999999998653221 1223445
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 248 FTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.+++++++.+.+++++....++|..+.++++.
T Consensus 221 ~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~~ 252 (254)
T PRK12746 221 GQVEDIADAVAFLASSDSRWVTGQIIDVSGGF 252 (254)
T ss_pred CCHHHHHHHHHHHcCcccCCcCCCEEEeCCCc
Confidence 68999999999988876677899999988874
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=230.42 Aligned_cols=230 Identities=21% Similarity=0.288 Sum_probs=191.5
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++++|+++||||+++||++++++|+++|++ |++++|+.++.+...+.+...+.++.++.+|++++++++++++++.++
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~--Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGVN--VGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999987 999999987766554444445668999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|++|||+|... ..+..+.+.+++++.+++|+.+++.+.+.+.+.+.+++.+ ++|++||..+..
T Consensus 82 ~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~~ss~~~~~ 148 (239)
T PRK07666 82 LGSIDILINNAGISK-------FGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSG------DIINISSTAGQK 148 (239)
T ss_pred cCCccEEEEcCcccc-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCc------EEEEEcchhhcc
Confidence 999999999999864 3445567788899999999999999999999998876554 899999988776
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-cCCCCCCCCChHHHHHHHHHHHhh
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-RNVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
+ .++...|+++|+++..+++.++.|+.+. ++++++++||++.|++..... .........+++++|+.+..+++.
T Consensus 149 ~---~~~~~~Y~~sK~a~~~~~~~~a~e~~~~--gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 223 (239)
T PRK07666 149 G---AAVTSAYSASKFGVLGLTESLMQEVRKH--NIRVTALTPSTVATDMAVDLGLTDGNPDKVMQPEDLAEFIVAQLKL 223 (239)
T ss_pred C---CCCCcchHHHHHHHHHHHHHHHHHhhcc--CcEEEEEecCcccCcchhhccccccCCCCCCCHHHHHHHHHHHHhC
Confidence 6 5566789999999999999999999887 899999999999999865432 222234567899999999999976
Q ss_pred cCCCCCCceeecCCc
Q 023441 264 IKSHDNGKFFAWDGQ 278 (282)
Q Consensus 264 ~~~~~~g~~~~~d~~ 278 (282)
. .+.++..-|.
T Consensus 224 ~----~~~~~~~~~~ 234 (239)
T PRK07666 224 N----KRTFIKSAGL 234 (239)
T ss_pred C----CceEEEEEEE
Confidence 4 2444444333
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=218.17 Aligned_cols=188 Identities=24% Similarity=0.299 Sum_probs=166.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|.+.|.++|||||++|||+++|++|.+.|.. ||+++|+++.++++.... ..++...||+.|.++.+++++++++
T Consensus 1 mk~tgnTiLITGG~sGIGl~lak~f~elgN~--VIi~gR~e~~L~e~~~~~----p~~~t~v~Dv~d~~~~~~lvewLkk 74 (245)
T COG3967 1 MKTTGNTILITGGASGIGLALAKRFLELGNT--VIICGRNEERLAEAKAEN----PEIHTEVCDVADRDSRRELVEWLKK 74 (245)
T ss_pred CcccCcEEEEeCCcchhhHHHHHHHHHhCCE--EEEecCcHHHHHHHHhcC----cchheeeecccchhhHHHHHHHHHh
Confidence 5678999999999999999999999999998 999999999988765554 4688899999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.|+.+|+||||||+....+.. -.+...+..+..+++|+.++..++..++|.+.++..+ .||++||-.++
T Consensus 75 ~~P~lNvliNNAGIqr~~dlt-----~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a------~IInVSSGLaf 143 (245)
T COG3967 75 EYPNLNVLINNAGIQRNEDLT-----GAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEA------TIINVSSGLAF 143 (245)
T ss_pred hCCchheeeecccccchhhcc-----CCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc------eEEEecccccc
Confidence 999999999999999733322 1223345567789999999999999999999998765 99999999998
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~ 233 (282)
.+ +...+.|+++|||+++++.+|+.++... .|.|.-+.|-.|+|+
T Consensus 144 vP---m~~~PvYcaTKAaiHsyt~aLR~Qlk~t--~veVIE~~PP~V~t~ 188 (245)
T COG3967 144 VP---MASTPVYCATKAAIHSYTLALREQLKDT--SVEVIELAPPLVDTT 188 (245)
T ss_pred Cc---ccccccchhhHHHHHHHHHHHHHHhhhc--ceEEEEecCCceecC
Confidence 88 7778899999999999999999999887 799999999999996
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=241.71 Aligned_cols=237 Identities=22% Similarity=0.301 Sum_probs=185.5
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc-C-CCceeEEEeeCCChhHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR-F-PERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~-~-~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
..+++||+++||||++|||+++|++|+++|++ |++++|+.++.+...+.+.+ . +.++.++++|++|.+++++++++
T Consensus 11 ~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~--vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~ 88 (306)
T PRK06197 11 IPDQSGRVAVVTGANTGLGYETAAALAAKGAH--VVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADA 88 (306)
T ss_pred cccCCCCEEEEcCCCCcHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHH
Confidence 46789999999999999999999999999987 99999988766543333222 1 34788999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.++++++|++|||||... . ....+.++++..+++|+.+++.+++.++|.+++++.+ +||++||.
T Consensus 89 ~~~~~~~iD~li~nAg~~~-------~--~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~------~iV~vSS~ 153 (306)
T PRK06197 89 LRAAYPRIDLLINNAGVMY-------T--PKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGS------RVVTVSSG 153 (306)
T ss_pred HHhhCCCCCEEEECCcccc-------C--CCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCC------EEEEECCH
Confidence 9999999999999999864 1 1234567888999999999999999999999876543 89999998
Q ss_pred cccc-CC---------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCC-------
Q 023441 181 VGSI-GD---------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVP------- 243 (282)
Q Consensus 181 ~~~~-~~---------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~------- 243 (282)
.+.. +. .+.++...|++||++++.|++.++++++..+++|.+++++||+++|++.+.+.....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~~~~~~~~~~~~~~~~ 233 (306)
T PRK06197 154 GHRIRAAIHFDDLQWERRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELARNLPRALRPVATVLA 233 (306)
T ss_pred HHhccCCCCccccCcccCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcccccCcHHHHHHHHHHH
Confidence 6543 10 123456789999999999999999999988666777777899999998764322100
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 244 EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
.....++++.+...+++.... +..+|.++..++
T Consensus 234 ~~~~~~~~~g~~~~~~~~~~~-~~~~g~~~~~~~ 266 (306)
T PRK06197 234 PLLAQSPEMGALPTLRAATDP-AVRGGQYYGPDG 266 (306)
T ss_pred hhhcCCHHHHHHHHHHHhcCC-CcCCCeEEccCc
Confidence 112346788887777776543 345788887665
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=235.74 Aligned_cols=230 Identities=23% Similarity=0.294 Sum_probs=186.1
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCC-ceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE-RLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~-~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
|+++||||++|||++++++|+++|++ |++++|+.+..+...+.+...+. .+.++++|++|+++++++++++.+.+++
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~--vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAE--LFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGS 78 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 57999999999999999999999987 89999988766554443333333 4567899999999999999999999999
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++|||+|... ..+..+.+.++++..+++|+.+++.+++.+.|.|.+++.+ ++||++||..+..+
T Consensus 79 id~lv~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~-----g~ii~isS~~~~~~-- 144 (272)
T PRK07832 79 MDVVMNIAGISA-------WGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRG-----GHLVNVSSAAGLVA-- 144 (272)
T ss_pred CCEEEECCCCCC-------CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC-----cEEEEEccccccCC--
Confidence 999999999864 4556678889999999999999999999999999765322 38999999887655
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC--------------CCCCCCCChHHH
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN--------------VPEGKLFTKEFS 253 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~--------------~~~~~~~~~~~~ 253 (282)
.+....|+++|+++.+++++++.|+.+. +|++++++||+++|++.+..... .......+|+++
T Consensus 145 -~~~~~~Y~~sK~a~~~~~~~l~~e~~~~--~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (272)
T PRK07832 145 -LPWHAAYSASKFGLRGLSEVLRFDLARH--GIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVDRFRGHAVTPEKA 221 (272)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHhhhc--CcEEEEEecCcccCcchhcccccccCcchhhHHHHHHhcccCCCCHHHH
Confidence 6677899999999999999999999887 89999999999999986543210 012345799999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
|+.+++++... +..++.-+.++++
T Consensus 222 A~~~~~~~~~~-~~~~~~~~~~~~~ 245 (272)
T PRK07832 222 AEKILAGVEKN-RYLVYTSPDIRAL 245 (272)
T ss_pred HHHHHHHHhcC-CeEEecCcchHHH
Confidence 99999999654 3444444444433
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=227.83 Aligned_cols=237 Identities=23% Similarity=0.369 Sum_probs=197.4
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc-ccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG-ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~-~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|++++|+++||||+++||.+++++|+++|++ |++..|+..+ .+...+.....+.++.++.+|+++++++.++++++.
T Consensus 1 ~~~~~~~vlItG~sg~iG~~l~~~l~~~G~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 78 (248)
T PRK05557 1 MSLEGKVALVTGASRGIGRAIAERLAAQGAN--VVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAK 78 (248)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 5678899999999999999999999999988 7777776653 333444444445689999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|++|||+|... .....+.+.+.+++.+.+|+.+.+.+.+.+.+.+.+.+.+ +++++||..+
T Consensus 79 ~~~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~~v~iss~~~ 145 (248)
T PRK05557 79 AEFGGVDILVNNAGITR-------DNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSG------RIINISSVVG 145 (248)
T ss_pred HHcCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCe------EEEEEccccc
Confidence 99999999999999874 4455566788899999999999999999999998776543 8999999877
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------CCCCCCCCChHHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------NVPEGKLFTKEFSV 254 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~~~~~~~~~~~~~a 254 (282)
..+ .++...|+++|++++.+++.++.++... ++++++++||+++|++.+.... ..+.....++++++
T Consensus 146 ~~~---~~~~~~y~~sk~a~~~~~~~~a~~~~~~--~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va 220 (248)
T PRK05557 146 LMG---NPGQANYAASKAGVIGFTKSLARELASR--GITVNAVAPGFIETDMTDALPEDVKEAILAQIPLGRLGQPEEIA 220 (248)
T ss_pred CcC---CCCCchhHHHHHHHHHHHHHHHHHhhhh--CeEEEEEecCccCCccccccChHHHHHHHhcCCCCCCcCHHHHH
Confidence 665 4567889999999999999999999877 8999999999999987654321 22334557899999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCccc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.+.+++......++|+.+.++++..
T Consensus 221 ~~~~~l~~~~~~~~~g~~~~i~~~~~ 246 (248)
T PRK05557 221 SAVAFLASDEAAYITGQTLHVNGGMV 246 (248)
T ss_pred HHHHHHcCcccCCccccEEEecCCcc
Confidence 99999888767788999999998864
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=225.49 Aligned_cols=220 Identities=23% Similarity=0.329 Sum_probs=185.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.+|+++||||+++||++++++|+++|++ |++++|+.+.. ....++.+|++|.++++++++++.+.+
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~--v~~~~r~~~~~-----------~~~~~~~~D~~~~~~~~~~~~~~~~~~- 67 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQ--VIGIARSAIDD-----------FPGELFACDLADIEQTAATLAQINEIH- 67 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCE--EEEEeCCcccc-----------cCceEEEeeCCCHHHHHHHHHHHHHhC-
Confidence 5799999999999999999999999987 99999987541 012578999999999999999998886
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++|||+|... ..+..+.+.+++++.+++|+.+++.+.+.+.|.+++++.+ +|+++||... .+
T Consensus 68 ~~d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~~sS~~~-~~- 132 (234)
T PRK07577 68 PVDAIVNNVGIAL-------PQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQG------RIVNICSRAI-FG- 132 (234)
T ss_pred CCcEEEECCCCCC-------CCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc------EEEEEccccc-cC-
Confidence 5999999999875 4455667788999999999999999999999999876554 8999999753 23
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-----------CCCCCCCCChHHHHH
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-----------NVPEGKLFTKEFSVQ 255 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-----------~~~~~~~~~~~~~a~ 255 (282)
.+....|+++|+++++++++++.|+++. +|++++|+||++.|++.....+ ..+.....+|+++|+
T Consensus 133 --~~~~~~Y~~sK~a~~~~~~~~a~e~~~~--gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 208 (234)
T PRK07577 133 --ALDRTSYSAAKSALVGCTRTWALELAEY--GITVNAVAPGPIETELFRQTRPVGSEEEKRVLASIPMRRLGTPEEVAA 208 (234)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHHHhh--CcEEEEEecCcccCcccccccccchhHHHHHhhcCCCCCCcCHHHHHH
Confidence 4566789999999999999999999987 8999999999999997643211 223344568999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCcc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.++++++......+|+.+.+||+.
T Consensus 209 ~~~~l~~~~~~~~~g~~~~~~g~~ 232 (234)
T PRK07577 209 AIAFLLSDDAGFITGQVLGVDGGG 232 (234)
T ss_pred HHHHHhCcccCCccceEEEecCCc
Confidence 999999877788999999999874
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=228.48 Aligned_cols=237 Identities=25% Similarity=0.382 Sum_probs=202.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|++++|++|||||+++||.+++++|+++|+. |++++|+..+.+.....+...+.++.++.+|++|++++.++++++.+
T Consensus 1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (246)
T PRK05653 1 MSLQGKTALVTGASRGIGRAIALRLAADGAK--VVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVE 78 (246)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4677899999999999999999999999988 99999998776655555555567899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||+|... ..+..+.+.+.++..++.|+.+.+++++.+.+.+.+.+.+ ++|++||..+.
T Consensus 79 ~~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~------~ii~~ss~~~~ 145 (246)
T PRK05653 79 AFGALDILVNNAGITR-------DALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYG------RIVNISSVSGV 145 (246)
T ss_pred HhCCCCEEEECCCcCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc------EEEEECcHHhc
Confidence 9999999999999875 4455667788899999999999999999999998766544 89999998776
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFSVQ 255 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~a~ 255 (282)
.+ ......|+.+|++++.+++++++++.+. ++++++++||.+.+++...+. ...+.....+++++++
T Consensus 146 ~~---~~~~~~y~~sk~~~~~~~~~l~~~~~~~--~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~ 220 (246)
T PRK05653 146 TG---NPGQTNYSAAKAGVIGFTKALALELASR--GITVNAVAPGFIDTDMTEGLPEEVKAEILKEIPLGRLGQPEEVAN 220 (246)
T ss_pred cC---CCCCcHhHhHHHHHHHHHHHHHHHHhhc--CeEEEEEEeCCcCCcchhhhhHHHHHHHHhcCCCCCCcCHHHHHH
Confidence 55 4566789999999999999999998877 899999999999998765311 1233355678899999
Q ss_pred HHHHHHhhcCCCCCCceeecCCccc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+.+++.......+|..+.++|+++
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~gg~~ 245 (246)
T PRK05653 221 AVAFLASDAASYITGQVIPVNGGMY 245 (246)
T ss_pred HHHHHcCchhcCccCCEEEeCCCee
Confidence 9999998777888999999999874
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-32 Score=230.45 Aligned_cols=230 Identities=23% Similarity=0.290 Sum_probs=193.6
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
+|+++||||+++||++++++|+++|++ |++.+|+.++.+...+... +.++.++++|++|.+++.++++++.+++++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~--v~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDR--VLALDIDAAALAAFADALG--DARFVPVACDLTDAASLAAALANAAAERGP 77 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 689999999999999999999999987 9999998876654443332 347889999999999999999999999999
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++|||+|... ..+..+.++++|...+.+|+.+++.+.+.+.+.+.+++.+ +++++||..+...
T Consensus 78 ~d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~iv~~sS~~~~~~-- 142 (257)
T PRK07074 78 VDVLVANAGAAR-------AASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRG------AVVNIGSVNGMAA-- 142 (257)
T ss_pred CCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCe------EEEEEcchhhcCC--
Confidence 999999999874 3455667788999999999999999999999998776554 8999999765432
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-----------cCCCCCCCCChHHHHHH
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-----------RNVPEGKLFTKEFSVQK 256 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-----------~~~~~~~~~~~~~~a~~ 256 (282)
.+...|+++|++++.++++++.++.+. ++++++++||++.|++..... ...+...+..++++++.
T Consensus 143 --~~~~~y~~sK~a~~~~~~~~a~~~~~~--gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~ 218 (257)
T PRK07074 143 --LGHPAYSAAKAGLIHYTKLLAVEYGRF--GIRANAVAPGTVKTQAWEARVAANPQVFEELKKWYPLQDFATPDDVANA 218 (257)
T ss_pred --CCCcccHHHHHHHHHHHHHHHHHHhHh--CeEEEEEEeCcCCcchhhcccccChHHHHHHHhcCCCCCCCCHHHHHHH
Confidence 345689999999999999999999988 899999999999999754211 12334567899999999
Q ss_pred HHHHHhhcCCCCCCceeecCCccc
Q 023441 257 LLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 257 ~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++++++.....+|+.+.+|+++.
T Consensus 219 ~~~l~~~~~~~~~g~~~~~~~g~~ 242 (257)
T PRK07074 219 VLFLASPAARAITGVCLPVDGGLT 242 (257)
T ss_pred HHHHcCchhcCcCCcEEEeCCCcC
Confidence 999998777788999999998864
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=259.44 Aligned_cols=240 Identities=19% Similarity=0.266 Sum_probs=199.3
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc-cCC-CceeEEEeeCCChhHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN-RFP-ERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~-~~~-~~v~~~~~Dls~~~~~~~~~~ 99 (282)
.+.+++||++|||||++|||++++++|+++|++ |++.+|+.+..+...+.+. ..+ .++..+++|++|.++++++++
T Consensus 408 ~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~--Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~ 485 (676)
T TIGR02632 408 KEKTLARRVAFVTGGAGGIGRETARRLAAEGAH--VVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFA 485 (676)
T ss_pred CCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCE--EEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHH
Confidence 345678999999999999999999999999987 9999998876655433332 122 367889999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.+.+|++|++|||||... ..+..+.+.+.|+..+++|+.+++.+++.+.+.|++++.+ ++||++||
T Consensus 486 ~i~~~~g~iDilV~nAG~~~-------~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~-----g~IV~iSS 553 (676)
T TIGR02632 486 DVALAYGGVDIVVNNAGIAT-------SSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLG-----GNIVFIAS 553 (676)
T ss_pred HHHHhcCCCcEEEECCCCCC-------CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CEEEEEeC
Confidence 99999999999999999864 4556677788999999999999999999999999876532 38999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccC--CCCcc--------------------
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDT--DLSRP-------------------- 237 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t--~~~~~-------------------- 237 (282)
..+..+ .++...|+++|++++.++++++.|+++. +|+||+|+||.+.+ .+...
T Consensus 554 ~~a~~~---~~~~~aY~aSKaA~~~l~r~lA~el~~~--gIrVn~V~Pg~V~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (676)
T TIGR02632 554 KNAVYA---GKNASAYSAAKAAEAHLARCLAAEGGTY--GIRVNTVNPDAVLQGSGIWDGEWREERAAAYGIPADELEEH 628 (676)
T ss_pred hhhcCC---CCCCHHHHHHHHHHHHHHHHHHHHhccc--CeEEEEEECCceecCcccccccchhhhhhcccCChHHHHHH
Confidence 887766 5667899999999999999999999988 89999999999864 22211
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 238 FQRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 238 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+....+.....+|+++|+.+.+++++....++|.++.+||++.
T Consensus 629 ~~~r~~l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDGG~~ 671 (676)
T TIGR02632 629 YAKRTLLKRHIFPADIAEAVFFLASSKSEKTTGCIITVDGGVP 671 (676)
T ss_pred HHhcCCcCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCch
Confidence 1122334556789999999999998777899999999999875
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=234.51 Aligned_cols=223 Identities=24% Similarity=0.357 Sum_probs=185.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++|+++||||++|||++++++|+++|++ |++.+|+.+.++...+. .+.++.++++|++|+++++++++.+.+.++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~--V~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDR--VVATARDTATLADLAEK---YGDRLLPLALDVTDRAAVFAAVETAVEHFG 76 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHh---ccCCeeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999987 99999987765543332 245788999999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++|||+|... ..+..+.+.+++++.+++|+.+++.+++.+.|.+++++.+ ++|++||..+..+
T Consensus 77 ~~d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~vsS~~~~~~- 142 (275)
T PRK08263 77 RLDIVVNNAGYGL-------FGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG------HIIQISSIGGISA- 142 (275)
T ss_pred CCCEEEECCCCcc-------ccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC------EEEEEcChhhcCC-
Confidence 9999999999874 4556677889999999999999999999999999876554 8999999888766
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-----------------CCCCCCC-C
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-----------------NVPEGKL-F 248 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-----------------~~~~~~~-~ 248 (282)
.+....|+++|++++.+++.++.++++. ++++++++||+++|++...... ..+.... .
T Consensus 143 --~~~~~~Y~~sKaa~~~~~~~la~e~~~~--gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (275)
T PRK08263 143 --FPMSGIYHASKWALEGMSEALAQEVAEF--GIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQWSERSVDG 218 (275)
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHhhhh--CcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHHHHHhccCCC
Confidence 5667789999999999999999999887 8999999999999998642110 0112234 7
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceee
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFA 274 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~ 274 (282)
+|+++++.++.++... ...+.++.
T Consensus 219 ~p~dva~~~~~l~~~~--~~~~~~~~ 242 (275)
T PRK08263 219 DPEAAAEALLKLVDAE--NPPLRLFL 242 (275)
T ss_pred CHHHHHHHHHHHHcCC--CCCeEEEe
Confidence 8999999999999853 33445544
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=230.36 Aligned_cols=229 Identities=27% Similarity=0.433 Sum_probs=185.7
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC-cccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN-GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~-~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
|+++||||++|||++++++|+++|++ |++.+|+.. ..+ +.....+.+++++++|++|.++++++++++.+.++.
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~--V~~~~r~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTH--VISISRTENKELT---KLAEQYNSNLTFHSLDLQDVHELETNFNEILSSIQE 76 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCE--EEEEeCCchHHHH---HHHhccCCceEEEEecCCCHHHHHHHHHHHHHhcCc
Confidence 68999999999999999999999987 899999863 222 222233467899999999999999999999887653
Q ss_pred --cc--EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 108 --LN--LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 108 --id--~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++ ++|+|+|... +..+..+.+.+.|.+.+++|+.+++.+++.+.|.+.+.+.+ ++||++||..+.
T Consensus 77 ~~~~~~~~v~~ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-----~~iv~~sS~~~~ 145 (251)
T PRK06924 77 DNVSSIHLINNAGMVA------PIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVD-----KRVINISSGAAK 145 (251)
T ss_pred ccCCceEEEEcceecc------cCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCC-----ceEEEecchhhc
Confidence 22 8999999864 23456677889999999999999999999999998764321 389999998776
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------------CCCCCCCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------------NVPEGKLFT 249 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------------~~~~~~~~~ 249 (282)
.+ .+....|+++|++++.+++.++.|++..+.+|+|++|.||+++|++.+.... ..+.....+
T Consensus 146 ~~---~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (251)
T PRK06924 146 NP---YFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTNLDRFITLKEEGKLLS 222 (251)
T ss_pred CC---CCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchHHHHHHHHhhcCCcCC
Confidence 55 6677899999999999999999998755558999999999999997543111 112345779
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
|+++|+.+++++++. ...+|+.+.+|+
T Consensus 223 ~~dva~~~~~l~~~~-~~~~G~~~~v~~ 249 (251)
T PRK06924 223 PEYVAKALRNLLETE-DFPNGEVIDIDE 249 (251)
T ss_pred HHHHHHHHHHHHhcc-cCCCCCEeehhh
Confidence 999999999999874 788999998875
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=223.88 Aligned_cols=224 Identities=29% Similarity=0.480 Sum_probs=185.4
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|+++||||++|||.+++++|+++|++ |++++|+.+..+.+.+. .++.++.+|++|+++++++++.+.+ +++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~-----~~~~~~~~D~~d~~~~~~~~~~~~~--~~i 72 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQ--VTATVRGPQQDTALQAL-----PGVHIEKLDMNDPASLDQLLQRLQG--QRF 72 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCE--EEEEeCCCcchHHHHhc-----cccceEEcCCCCHHHHHHHHHHhhc--CCC
Confidence 68999999999999999999999987 99999998765443221 3578889999999999999998854 479
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|++|||+|..... ..+..+.+.++++..+++|+.+++.+.+.+.+.+++. .+ .++++||..+..+..+
T Consensus 73 d~vi~~ag~~~~~-----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~------~iv~~ss~~g~~~~~~ 140 (225)
T PRK08177 73 DLLFVNAGISGPA-----HQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPG-QG------VLAFMSSQLGSVELPD 140 (225)
T ss_pred CEEEEcCcccCCC-----CCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhc-CC------EEEEEccCccccccCC
Confidence 9999999986411 2334566778899999999999999999999988653 22 8899999887765444
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhcCCCC
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIKSHD 268 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 268 (282)
......|+++|++++.|++.++.|++++ +|++++|+||+++|++.... ...++++.+..++..+.......
T Consensus 141 ~~~~~~Y~~sK~a~~~~~~~l~~e~~~~--~i~v~~i~PG~i~t~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 211 (225)
T PRK08177 141 GGEMPLYKASKAALNSMTRSFVAELGEP--TLTVLSMHPGWVKTDMGGDN-------APLDVETSVKGLVEQIEAASGKG 211 (225)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHhhcC--CeEEEEEcCCceecCCCCCC-------CCCCHHHHHHHHHHHHHhCCccC
Confidence 5567789999999999999999999987 89999999999999985431 12578888999999988876667
Q ss_pred CCceeecCCcccCC
Q 023441 269 NGKFFAWDGQEIPW 282 (282)
Q Consensus 269 ~g~~~~~d~~~~~~ 282 (282)
++.++.++++.++|
T Consensus 212 ~~~~~~~~~~~~~~ 225 (225)
T PRK08177 212 GHRFIDYQGETLPW 225 (225)
T ss_pred CCceeCcCCcCCCC
Confidence 77778889989888
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=226.29 Aligned_cols=235 Identities=20% Similarity=0.242 Sum_probs=196.1
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||++|||||+++||++++++|+++|++ |++++|+.++.....+.+.. ..+.++.+|++|.++++++++++.+
T Consensus 3 ~~~~~k~vlItGatg~iG~~la~~l~~~G~~--v~~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (239)
T PRK12828 3 HSLQGKVVAITGGFGGLGRATAAWLAARGAR--VALIGRGAAPLSQTLPGVPA--DALRIGGIDLVDPQAARRAVDEVNR 78 (239)
T ss_pred CCCCCCEEEEECCCCcHhHHHHHHHHHCCCe--EEEEeCChHhHHHHHHHHhh--cCceEEEeecCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999988 99999988765443332222 2567788999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|++||++|... .....+.+.+.+++.+.+|+.+++.+++.+.+.+.+++.+ +++++||..+.
T Consensus 79 ~~~~~d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~iv~~sS~~~~ 145 (239)
T PRK12828 79 QFGRLDALVNIAGAFV-------WGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGG------RIVNIGAGAAL 145 (239)
T ss_pred HhCCcCEEEECCcccC-------cCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCC------EEEEECchHhc
Confidence 9999999999999864 3445556788899999999999999999999998766544 89999998876
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhh
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
.+ .+....|+++|++++.+++.++.++... +++++++.||++.|++............+.++++++..+++++.+
T Consensus 146 ~~---~~~~~~y~~sk~a~~~~~~~~a~~~~~~--~i~~~~i~pg~v~~~~~~~~~~~~~~~~~~~~~dva~~~~~~l~~ 220 (239)
T PRK12828 146 KA---GPGMGAYAAAKAGVARLTEALAAELLDR--GITVNAVLPSIIDTPPNRADMPDADFSRWVTPEQIAAVIAFLLSD 220 (239)
T ss_pred cC---CCCcchhHHHHHHHHHHHHHHHHHhhhc--CeEEEEEecCcccCcchhhcCCchhhhcCCCHHHHHHHHHHHhCc
Confidence 55 4566789999999999999999998877 899999999999998654433222233456899999999999987
Q ss_pred cCCCCCCceeecCCccc
Q 023441 264 IKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 264 ~~~~~~g~~~~~d~~~~ 280 (282)
.....+|+.+.++|+++
T Consensus 221 ~~~~~~g~~~~~~g~~~ 237 (239)
T PRK12828 221 EAQAITGASIPVDGGVA 237 (239)
T ss_pred ccccccceEEEecCCEe
Confidence 76778999999999864
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=229.55 Aligned_cols=210 Identities=22% Similarity=0.323 Sum_probs=180.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++|+++||||++|||++++++|+++|++ |++.+|+.+..+. ..+++++++|++|+++++++++.+.++++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~--V~~~~r~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYR--VFGTSRNPARAAP--------IPGVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCE--EEEEeCChhhccc--------cCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999988 9999998765432 13678999999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++|||+|... ..+..+.+.+++++.+++|+.+++.+++.+.|.|++++.+ +||++||..+..+
T Consensus 73 ~~d~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~------~iv~isS~~~~~~- 138 (270)
T PRK06179 73 RIDVLVNNAGVGL-------AGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSG------RIINISSVLGFLP- 138 (270)
T ss_pred CCCEEEECCCCCC-------CcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------eEEEECCccccCC-
Confidence 9999999999875 4556677888999999999999999999999999887665 8999999988766
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCC-------------------CCCCC
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNV-------------------PEGKL 247 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~-------------------~~~~~ 247 (282)
.+....|+++|++++.+++.++.|+++. +|++++++||+++|++.+...... .....
T Consensus 139 --~~~~~~Y~~sK~a~~~~~~~l~~el~~~--gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (270)
T PRK06179 139 --APYMALYAASKHAVEGYSESLDHEVRQF--GIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSKAVAKAVKKA 214 (270)
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHHhhh--CcEEEEEeCCCcccccccccCCCCCcchhhHHHHHHHHHHHHhccccC
Confidence 5667899999999999999999999987 899999999999999866432111 11234
Q ss_pred CChHHHHHHHHHHHhhc
Q 023441 248 FTKEFSVQKLLNIINNI 264 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~ 264 (282)
.+|++++..++.++...
T Consensus 215 ~~~~~va~~~~~~~~~~ 231 (270)
T PRK06179 215 DAPEVVADTVVKAALGP 231 (270)
T ss_pred CCHHHHHHHHHHHHcCC
Confidence 58899999999988754
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=230.98 Aligned_cols=215 Identities=21% Similarity=0.303 Sum_probs=181.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.+|++|||||++|||++++++|+++|++ |++++|+.+..+.+.+ ..+.++.++.+|++|++++.++++.+.+.++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~--V~~~~r~~~~~~~l~~---~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 77 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHR--VVGTVRSEAARADFEA---LHPDRALARLLDVTDFDAIDAVVADAEATFG 77 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCE--EEEEeCCHHHHHHHHh---hcCCCeeEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999999987 9999998776543322 2345788999999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++|||+|... ..+..+.+.+.+++.+++|+.+++++++.+.|.+++++.+ +||++||..+..+
T Consensus 78 ~~d~vv~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~------~iv~iSS~~~~~~- 143 (277)
T PRK06180 78 PIDVLVNNAGYGH-------EGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRG------HIVNITSMGGLIT- 143 (277)
T ss_pred CCCEEEECCCccC-------CcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCC------EEEEEecccccCC-
Confidence 9999999999864 4556677788999999999999999999999999877654 8999999988766
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---------------------CCCCC
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR---------------------NVPEG 245 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---------------------~~~~~ 245 (282)
.++...|+++|++++.++++++.|+++. ++++++|+||++.|++...... ..+..
T Consensus 144 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (277)
T PRK06180 144 --MPGIGYYCGSKFALEGISESLAKEVAPF--GIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAREAKSGK 219 (277)
T ss_pred --CCCcchhHHHHHHHHHHHHHHHHHhhhh--CcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHHhhccC
Confidence 5677899999999999999999999887 8999999999999987432110 01123
Q ss_pred CCCChHHHHHHHHHHHhhc
Q 023441 246 KLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~ 264 (282)
...+|+++++.++.++...
T Consensus 220 ~~~~~~dva~~~~~~l~~~ 238 (277)
T PRK06180 220 QPGDPAKAAQAILAAVESD 238 (277)
T ss_pred CCCCHHHHHHHHHHHHcCC
Confidence 4568999999999998754
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=227.99 Aligned_cols=216 Identities=19% Similarity=0.262 Sum_probs=181.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc-C-CCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR-F-PERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~-~-~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++|+++||||++|||++++++|+++|++ |++.+|+.++.+.+...+.. . +.+++++++|++|++++.++++++.++
T Consensus 1 ~~k~vlItGas~giG~~la~~l~~~g~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (248)
T PRK08251 1 TRQKILITGASSGLGAGMAREFAAKGRD--LALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDE 78 (248)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999999987 99999998776654433322 1 457999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|++|||+|+.. ..+..+.+.+.+++.+++|+.+++.+.+.+.+.+++++.+ ++|++||..+..
T Consensus 79 ~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~iv~~sS~~~~~ 145 (248)
T PRK08251 79 LGGLDRVIVNAGIGK-------GARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSG------HLVLISSVSAVR 145 (248)
T ss_pred cCCCCEEEECCCcCC-------CCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC------eEEEEecccccc
Confidence 999999999999875 3344455667888999999999999999999999876554 899999988776
Q ss_pred CCCCCC-CcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhh
Q 023441 185 GDNRLG-GWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 185 ~~~~~~-~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
+ .+ ....|+++|++++.+++.++.++... ++++++|+||+++|++.+.... ....+++++.++.++..+..
T Consensus 146 ~---~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~--~i~v~~v~pg~v~t~~~~~~~~---~~~~~~~~~~a~~i~~~~~~ 217 (248)
T PRK08251 146 G---LPGVKAAYAASKAGVASLGEGLRAELAKT--PIKVSTIEPGYIRSEMNAKAKS---TPFMVDTETGVKALVKAIEK 217 (248)
T ss_pred C---CCCCcccHHHHHHHHHHHHHHHHHHhccc--CcEEEEEecCcCcchhhhcccc---CCccCCHHHHHHHHHHHHhc
Confidence 6 33 35789999999999999999999866 8999999999999998765432 23456899999999998875
Q ss_pred cC
Q 023441 264 IK 265 (282)
Q Consensus 264 ~~ 265 (282)
..
T Consensus 218 ~~ 219 (248)
T PRK08251 218 EP 219 (248)
T ss_pred CC
Confidence 43
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=246.14 Aligned_cols=234 Identities=21% Similarity=0.296 Sum_probs=193.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
..++||++|||||++|||++++++|+++|++ |++++|.... +.+.+...+. ...++++|++|.++++++++.+.+
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga~--vi~~~~~~~~-~~l~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~ 280 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGAH--VVCLDVPAAG-EALAAVANRV--GGTALALDITAPDAPARIAEHLAE 280 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCCCE--EEEEeCCccH-HHHHHHHHHc--CCeEEEEeCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999988 8888874322 1122222221 345789999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||+|... ...+.+.+.+.|+..+++|+.+++++++.+.+.+..++.+ +||++||..+.
T Consensus 281 ~~g~id~vi~~AG~~~-------~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g------~iv~~SS~~~~ 347 (450)
T PRK08261 281 RHGGLDIVVHNAGITR-------DKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGG------RIVGVSSISGI 347 (450)
T ss_pred hCCCCCEEEECCCcCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCC------EEEEECChhhc
Confidence 9999999999999875 4556677889999999999999999999999965433333 89999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------CCCCCCCCChHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------NVPEGKLFTKEFSVQ 255 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~~~~~~~~~~~~~a~ 255 (282)
.+ .++...|+++|+++++|+++++.++.+. +|++++|+||+++|++.+.+.. ..+..+...|+++++
T Consensus 348 ~g---~~~~~~Y~asKaal~~~~~~la~el~~~--gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~l~~~~~p~dva~ 422 (450)
T PRK08261 348 AG---NRGQTNYAASKAGVIGLVQALAPLLAER--GITINAVAPGFIETQMTAAIPFATREAGRRMNSLQQGGLPVDVAE 422 (450)
T ss_pred CC---CCCChHHHHHHHHHHHHHHHHHHHHhhh--CcEEEEEEeCcCcchhhhccchhHHHHHhhcCCcCCCCCHHHHHH
Confidence 66 5667899999999999999999999987 8999999999999988654321 112344568999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCccc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+.+++++....++|+.+.+||+.+
T Consensus 423 ~~~~l~s~~~~~itG~~i~v~g~~~ 447 (450)
T PRK08261 423 TIAWLASPASGGVTGNVVRVCGQSL 447 (450)
T ss_pred HHHHHhChhhcCCCCCEEEECCCcc
Confidence 9999998888899999999999754
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=225.91 Aligned_cols=236 Identities=24% Similarity=0.326 Sum_probs=190.4
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEE-eecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIA-TCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~-~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
|+++||||+++||++++++|+++|++ |++ ..|+.+..++....+...+.++.++++|++|+++++++++++.+++++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~ 79 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYT--VAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEP 79 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence 68999999999999999999999987 655 467665554444444444567899999999999999999999999999
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++|||+|... ...+..+.+.+.++..+++|+.+++.+++.+.+.+.++..+ ..+++|++||..+..+.+
T Consensus 80 id~vi~~ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~---~~g~~v~~sS~~~~~~~~ 150 (247)
T PRK09730 80 LAALVNNAGILF------TQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGG---SGGAIVNVSSAASRLGAP 150 (247)
T ss_pred CCEEEECCCCCC------CCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC---CCcEEEEECchhhccCCC
Confidence 999999999753 13445567778899999999999999999999988765321 113899999988776521
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc---------cCCCCCCCCChHHHHHHHH
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ---------RNVPEGKLFTKEFSVQKLL 258 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~---------~~~~~~~~~~~~~~a~~~~ 258 (282)
..+..|+++|++++.++++++.++.+. ++++++++||++.|++..... ...+.....+|+++++.+.
T Consensus 151 --~~~~~Y~~sK~~~~~~~~~l~~~~~~~--~i~v~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~ 226 (247)
T PRK09730 151 --GEYVDYAASKGAIDTLTTGLSLEVAAQ--GIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQPEEVAQAIV 226 (247)
T ss_pred --CcccchHhHHHHHHHHHHHHHHHHHHh--CeEEEEEEeCCCcCcccccCCCHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 124579999999999999999999887 899999999999999754211 1223344568999999999
Q ss_pred HHHhhcCCCCCCceeecCCcc
Q 023441 259 NIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 259 ~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+++++.....+|.++.+||+.
T Consensus 227 ~~~~~~~~~~~g~~~~~~g~~ 247 (247)
T PRK09730 227 WLLSDKASYVTGSFIDLAGGK 247 (247)
T ss_pred hhcChhhcCccCcEEecCCCC
Confidence 999877778999999999863
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=226.15 Aligned_cols=232 Identities=22% Similarity=0.289 Sum_probs=188.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC-CcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~-~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|++++|++|||||+++||++++++|+++|++ |++..|+. +........+...+.++.++.+|+++++++.++++++.
T Consensus 2 ~~~~~~~vlitGasg~iG~~l~~~l~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (252)
T PRK06077 2 YSLKDKVVVVTGSGRGIGRAIAVRLAKEGSL--VVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATI 79 (252)
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHCCCE--EEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHH
Confidence 5678999999999999999999999999998 76666543 33333333344445578899999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+.++++|++|||+|... ..+..+.+.+.+++.+++|+.+.+.+++.+.+.+++. + ++|++||..+
T Consensus 80 ~~~~~~d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~------~iv~~sS~~~ 144 (252)
T PRK06077 80 DRYGVADILVNNAGLGL-------FSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG--G------AIVNIASVAG 144 (252)
T ss_pred HHcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC--c------EEEEEcchhc
Confidence 99999999999999864 3445566677899999999999999999999998753 2 8999999887
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc------------CCCCCCCCCh
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR------------NVPEGKLFTK 250 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~------------~~~~~~~~~~ 250 (282)
..+ .++...|+++|++++.++++++.|+.+ +++++.+.||+++|++...... ........+|
T Consensus 145 ~~~---~~~~~~Y~~sK~~~~~~~~~l~~~~~~---~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (252)
T PRK06077 145 IRP---AYGLSIYGAMKAAVINLTKYLALELAP---KIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAEKFTLMGKILDP 218 (252)
T ss_pred cCC---CCCchHHHHHHHHHHHHHHHHHHHHhc---CCEEEEEeeCCccChHHHhhhhcccccHHHHHHhcCcCCCCCCH
Confidence 755 667789999999999999999999876 6999999999999997543211 0112345799
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++|+.+++++.. ...+|..+.+++++.
T Consensus 219 ~dva~~~~~~~~~--~~~~g~~~~i~~g~~ 246 (252)
T PRK06077 219 EEVAEFVAAILKI--ESITGQVFVLDSGES 246 (252)
T ss_pred HHHHHHHHHHhCc--cccCCCeEEecCCee
Confidence 9999999999963 467888888887753
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=236.40 Aligned_cols=235 Identities=25% Similarity=0.386 Sum_probs=189.5
Q ss_pred ccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc--CCCceeEEEeeCCChhHHHHH
Q 023441 20 ASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR--FPERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 20 ~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~--~~~~v~~~~~Dls~~~~~~~~ 97 (282)
.....++.|++++||||++|||+++|++|+.+|++ |++.+||.++.++..+.+.. ...++.+++||++|.++++++
T Consensus 27 ~~~~~~~~~~~~vVTGansGIG~eta~~La~~Ga~--Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~f 104 (314)
T KOG1208|consen 27 VTHGIDLSGKVALVTGATSGIGFETARELALRGAH--VVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKF 104 (314)
T ss_pred eeccccCCCcEEEEECCCCchHHHHHHHHHhCCCE--EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHH
Confidence 35678899999999999999999999999999977 99999999877765544443 234899999999999999999
Q ss_pred HHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 98 AKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
+++++++++++|++|||||+...+ . ..+.+.++..+.+|++|+|.+++.++|.|+.+..+ +||++
T Consensus 105 a~~~~~~~~~ldvLInNAGV~~~~--------~-~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~------RIV~v 169 (314)
T KOG1208|consen 105 AEEFKKKEGPLDVLINNAGVMAPP--------F-SLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPS------RIVNV 169 (314)
T ss_pred HHHHHhcCCCccEEEeCcccccCC--------c-ccCccchhheehhhhHHHHHHHHHHHHHHhhCCCC------CEEEE
Confidence 999999999999999999998521 1 55678899999999999999999999999987653 99999
Q ss_pred ecccccc----C---CCC---CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------cc
Q 023441 178 SARVGSI----G---DNR---LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------QR 240 (282)
Q Consensus 178 ss~~~~~----~---~~~---~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------~~ 240 (282)
||..+.. . .+. +.....|+.||-+...+++.|++++.. ||.+++++||.+.|....+. ..
T Consensus 170 sS~~~~~~~~~~~l~~~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~---~V~~~~~hPG~v~t~~l~r~~~~~~~l~~ 246 (314)
T KOG1208|consen 170 SSILGGGKIDLKDLSGEKAKLYSSDAAYALSKLANVLLANELAKRLKK---GVTTYSVHPGVVKTTGLSRVNLLLRLLAK 246 (314)
T ss_pred cCccccCccchhhccchhccCccchhHHHHhHHHHHHHHHHHHHHhhc---CceEEEECCCcccccceecchHHHHHHHH
Confidence 9987611 0 011 333446999999999999999999976 89999999999999933331 11
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcC-CCCCCceee
Q 023441 241 NVPEGKLFTKEFSVQKLLNIINNIK-SHDNGKFFA 274 (282)
Q Consensus 241 ~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~g~~~~ 274 (282)
........+++..|+..++.+...+ +..+|.++.
T Consensus 247 ~l~~~~~ks~~~ga~t~~~~a~~p~~~~~sg~y~~ 281 (314)
T KOG1208|consen 247 KLSWPLTKSPEQGAATTCYAALSPELEGVSGKYFE 281 (314)
T ss_pred HHHHHhccCHHHHhhheehhccCccccCccccccc
Confidence 1112222478899999998876654 778888855
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=225.75 Aligned_cols=229 Identities=26% Similarity=0.381 Sum_probs=189.4
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||+++||||+++||.++++.|+++|++ |++++|+.++.+...+.. .+.++.+|++|.++++++++.
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~--V~~~~r~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~--- 74 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGAR--VVAAARNAAALDRLAGET-----GCEPLRLDVGDDAAIRAALAA--- 74 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHh-----CCeEEEecCCCHHHHHHHHHH---
Confidence 5688999999999999999999999999987 999999876554332221 356789999999988887765
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++++|++|||+|... ..+..+.+.+++++.+.+|+.+++.+++.+.+.+.+++.. ++||++||..+.
T Consensus 75 -~~~~d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-----~~iv~~sS~~~~ 141 (245)
T PRK07060 75 -AGAFDGLVNCAGIAS-------LESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRG-----GSIVNVSSQAAL 141 (245)
T ss_pred -hCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-----cEEEEEccHHHc
Confidence 478999999999864 3445556778899999999999999999999988755421 389999998877
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc----------cccCCCCCCCCChHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP----------FQRNVPEGKLFTKEFS 253 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~----------~~~~~~~~~~~~~~~~ 253 (282)
.+ .+....|+++|++++.++++++.++.+. ++++++++||++.|++... +....+...+.+++++
T Consensus 142 ~~---~~~~~~y~~sK~a~~~~~~~~a~~~~~~--~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 216 (245)
T PRK07060 142 VG---LPDHLAYCASKAALDAITRVLCVELGPH--GIRVNSVNPTVTLTPMAAEAWSDPQKSGPMLAAIPLGRFAEVDDV 216 (245)
T ss_pred CC---CCCCcHhHHHHHHHHHHHHHHHHHHhhh--CeEEEEEeeCCCCCchhhhhccCHHHHHHHHhcCCCCCCCCHHHH
Confidence 65 5567899999999999999999999887 8999999999999997431 1112344567899999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++.+.+++++.....+|+.+.+||++.
T Consensus 217 a~~~~~l~~~~~~~~~G~~~~~~~g~~ 243 (245)
T PRK07060 217 AAPILFLLSDAASMVSGVSLPVDGGYT 243 (245)
T ss_pred HHHHHHHcCcccCCccCcEEeECCCcc
Confidence 999999998877899999999999864
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-31 Score=226.40 Aligned_cols=213 Identities=22% Similarity=0.215 Sum_probs=179.7
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH-cCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK-YGS 107 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~-~~~ 107 (282)
|++|||||++|||++++++|+++|++ |++++|+.+..+.+.+... +.++.++++|++|.+++.++++.+.++ +++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWR--VGAYDINEAGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 78999999999999999999999987 9999999877665444332 457999999999999999999998877 789
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++|||+|... .....+.+.++++..+++|+.+++.+++.+.+.|+.++.+ +|+++||..+..+
T Consensus 78 id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~isS~~~~~~-- 142 (260)
T PRK08267 78 LDVLFNNAGILR-------GGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGA------RVINTSSASAIYG-- 142 (260)
T ss_pred CCEEEECCCCCC-------CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC------EEEEeCchhhCcC--
Confidence 999999999875 4455667788999999999999999999999999876554 8999999888776
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-----C-CCCCCCCChHHHHHHHHHHH
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-----N-VPEGKLFTKEFSVQKLLNII 261 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-----~-~~~~~~~~~~~~a~~~~~~~ 261 (282)
.+....|+++|++++.++++++.++.+. +|++++++||+++|++.+.... . .......+|+++++.++.++
T Consensus 143 -~~~~~~Y~~sKaa~~~~~~~l~~~~~~~--~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~ 219 (260)
T PRK08267 143 -QPGLAVYSATKFAVRGLTEALDLEWRRH--GIRVADVMPLFVDTAMLDGTSNEVDAGSTKRLGVRLTPEDVAEAVWAAV 219 (260)
T ss_pred -CCCchhhHHHHHHHHHHHHHHHHHhccc--CcEEEEEecCCcCCcccccccchhhhhhHhhccCCCCHHHHHHHHHHHH
Confidence 5667899999999999999999999988 8999999999999998653110 0 01123468899999999998
Q ss_pred hh
Q 023441 262 NN 263 (282)
Q Consensus 262 ~~ 263 (282)
..
T Consensus 220 ~~ 221 (260)
T PRK08267 220 QH 221 (260)
T ss_pred hC
Confidence 64
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-31 Score=228.03 Aligned_cols=218 Identities=24% Similarity=0.381 Sum_probs=182.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC--CCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF--PERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~--~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++|++|||||+++||.+++++|+++|++ |++++|+.+..+...+..... +.+++++.+|++|++++++ ++++.+.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~ 78 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYL--VIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKE 78 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCE--EEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHh
Confidence 6799999999999999999999999988 999999987766554443322 3579999999999999999 9999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|++|||+|... .....+.+.+.+++.+++|+.+++.+++.+.|.|++.+.+ ++|++||..+..
T Consensus 79 ~~~id~vv~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~vsS~~~~~ 145 (280)
T PRK06914 79 IGRIDLLVNNAGYAN-------GGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSG------KIINISSISGRV 145 (280)
T ss_pred cCCeeEEEECCcccc-------cCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC------EEEEECcccccC
Confidence 999999999999875 4455567788999999999999999999999999776544 899999988776
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc------C-----------------
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR------N----------------- 241 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~------~----------------- 241 (282)
+ .++...|+++|++++.++++++.++.++ +|++++++||+++|++...... .
T Consensus 146 ~---~~~~~~Y~~sK~~~~~~~~~l~~~~~~~--~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (280)
T PRK06914 146 G---FPGLSPYVSSKYALEGFSESLRLELKPF--GIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHIN 220 (280)
T ss_pred C---CCCCchhHHhHHHHHHHHHHHHHHhhhh--CCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHHh
Confidence 6 5667899999999999999999999888 8999999999999997542110 0
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcC
Q 023441 242 VPEGKLFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~ 265 (282)
.+.....+|+++|++++++++...
T Consensus 221 ~~~~~~~~~~dva~~~~~~~~~~~ 244 (280)
T PRK06914 221 SGSDTFGNPIDVANLIVEIAESKR 244 (280)
T ss_pred hhhhccCCHHHHHHHHHHHHcCCC
Confidence 012245689999999999998754
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-31 Score=233.16 Aligned_cols=239 Identities=18% Similarity=0.251 Sum_probs=184.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++++|+++||||++|||.+++++|+++|++ |++++|+.++.+...+.+...+.++.++++|++|.++++++++++.+
T Consensus 2 ~~~~~k~vlVTGas~gIG~~~a~~L~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (322)
T PRK07453 2 SQDAKGTVIITGASSGVGLYAAKALAKRGWH--VIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRA 79 (322)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999999999987 99999998776655444433345789999999999999999999888
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|+||||||+.. +.....+.+.++++..+++|+.+++.+++.+.|.|++++.+ .++||++||....
T Consensus 80 ~~~~iD~li~nAg~~~------~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~----~~riV~vsS~~~~ 149 (322)
T PRK07453 80 LGKPLDALVCNAAVYM------PLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAP----DPRLVILGTVTAN 149 (322)
T ss_pred hCCCccEEEECCcccC------CCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC----CceEEEEcccccC
Confidence 8789999999999863 11222355778999999999999999999999999876431 1389999996542
Q ss_pred cC----C----------------------------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccc-
Q 023441 184 IG----D----------------------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTV- 230 (282)
Q Consensus 184 ~~----~----------------------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v- 230 (282)
.+ . .++.....|+.||.+...+++.+++++... .+|++++++||++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~-~gi~v~~v~PG~v~ 228 (322)
T PRK07453 150 PKELGGKIPIPAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHES-TGITFSSLYPGCVA 228 (322)
T ss_pred ccccCCccCCCCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhccc-CCeEEEEecCCccc
Confidence 10 0 112345689999999999999999998532 2799999999999
Q ss_pred cCCCCccccc----------CCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeec
Q 023441 231 DTDLSRPFQR----------NVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 231 ~t~~~~~~~~----------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~ 275 (282)
.|++.+.... ........+++..++.+++++.+.....+|.+|.+
T Consensus 229 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~ 283 (322)
T PRK07453 229 DTPLFRNTPPLFQKLFPWFQKNITGGYVSQELAGERVAQVVADPEFAQSGVHWSW 283 (322)
T ss_pred CCcccccCCHHHHHHHHHHHHHHhhceecHHHHhhHHHHhhcCcccCCCCceeec
Confidence 5887544211 01112335778888888887766655679999874
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-31 Score=224.84 Aligned_cols=232 Identities=22% Similarity=0.281 Sum_probs=194.0
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
+|++|||||+++||++++++|+++|++ |++++|+.+..+.+.+.....+.++.++.+|++|.+++.++++++.+.+++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGAN--VVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999987 999999987666555554444568999999999999999999999999999
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++|||+|... .....+.+++.+++++++|+.+++.+++.+.+.+++.+.+ +++++||..+..+
T Consensus 79 ~d~vi~~a~~~~-------~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~------~~v~~ss~~~~~~-- 143 (255)
T TIGR01963 79 LDILVNNAGIQH-------VAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWG------RIINIASAHGLVA-- 143 (255)
T ss_pred CCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCe------EEEEEcchhhcCC--
Confidence 999999999864 3344455678899999999999999999999998765543 8999999876655
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------------------cCCCCCCC
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------------------RNVPEGKL 247 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------------------~~~~~~~~ 247 (282)
.+....|+++|++++.+++.++.++.+. +++++.++||++.|++..... +..+....
T Consensus 144 -~~~~~~y~~sk~a~~~~~~~~~~~~~~~--~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (255)
T TIGR01963 144 -SPFKSAYVAAKHGLIGLTKVLALEVAAH--GITVNAICPGYVRTPLVEKQIADQAKTRGIPEEQVIREVMLPGQPTKRF 220 (255)
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHhhhc--CeEEEEEecCccccHHHHHHHHhhhcccCCCchHHHHHHHHccCccccC
Confidence 5667899999999999999999998877 899999999999988643211 11122346
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 248 FTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.+++++++.+++++.......+|+.+.+++++
T Consensus 221 ~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~g~ 252 (255)
T TIGR01963 221 VTVDEVAETALFLASDAAAGITGQAIVLDGGW 252 (255)
T ss_pred cCHHHHHHHHHHHcCccccCccceEEEEcCcc
Confidence 78999999999999876667899999999876
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.9e-31 Score=224.59 Aligned_cols=237 Identities=23% Similarity=0.324 Sum_probs=195.1
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.++++|++|||||+++||++++++|+++|++ |++++|+.+..+.+.+.... .++.++.+|++|++++.++++++.+
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGAR--VHVCDVSEAALAATAARLPG--AKVTATVADVADPAQVERVFDTAVE 82 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHhc--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 3478999999999999999999999999987 99999987665544333322 2678999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||+|... +.......+.+.+++.+++|+.+++.+.+.+.+.+...+.+ ++++++||..+.
T Consensus 83 ~~~~~d~vi~~ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-----~~vv~~ss~~~~ 151 (264)
T PRK12829 83 RFGGLDVLVNNAGIAG------PTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHG-----GVIIALSSVAGR 151 (264)
T ss_pred HhCCCCEEEECCCCCC------CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC-----eEEEEecccccc
Confidence 9999999999999873 24455566778999999999999999999999988765442 378889988776
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-------------------CCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-------------------NVPE 244 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-------------------~~~~ 244 (282)
.+ .+....|+.+|++++.+++.++.++... +++++++.||++.|++.+.... ..+.
T Consensus 152 ~~---~~~~~~y~~~K~a~~~~~~~l~~~~~~~--~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (264)
T PRK12829 152 LG---YPGRTPYAASKWAVVGLVKSLAIELGPL--GIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLEKISL 226 (264)
T ss_pred cC---CCCCchhHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHhcCCC
Confidence 65 5566789999999999999999999877 8999999999999987543211 1233
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 245 GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
..+.+++++++.+..++.......+|+.+.++++.-
T Consensus 227 ~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~g~~ 262 (264)
T PRK12829 227 GRMVEPEDIAATALFLASPAARYITGQAISVDGNVE 262 (264)
T ss_pred CCCCCHHHHHHHHHHHcCccccCccCcEEEeCCCcc
Confidence 457889999999999887656778999999988753
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.7e-31 Score=215.20 Aligned_cols=196 Identities=18% Similarity=0.251 Sum_probs=164.2
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
+++||||++|||++++++|+++ ++ |++.+|+.. .++||++|++++++++++ ++++|
T Consensus 2 ~vlItGas~giG~~la~~l~~~-~~--vi~~~r~~~-----------------~~~~D~~~~~~~~~~~~~----~~~id 57 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR-HE--VITAGRSSG-----------------DVQVDITDPASIRALFEK----VGKVD 57 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc-Cc--EEEEecCCC-----------------ceEecCCChHHHHHHHHh----cCCCC
Confidence 7999999999999999999999 66 999988753 368999999999998875 47899
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCC
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRL 189 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~ 189 (282)
++|||+|... ..+..+.+.++|++.+++|+.+++++.+.+.|+|.+++ .|+++||..+..+ .
T Consensus 58 ~lv~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g--------~iv~iss~~~~~~---~ 119 (199)
T PRK07578 58 AVVSAAGKVH-------FAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGG--------SFTLTSGILSDEP---I 119 (199)
T ss_pred EEEECCCCCC-------CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------eEEEEcccccCCC---C
Confidence 9999999764 45566778889999999999999999999999997542 8999999887655 5
Q ss_pred CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhcCCCCC
Q 023441 190 GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIKSHDN 269 (282)
Q Consensus 190 ~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 269 (282)
++...|+++|+++++|+++++.|+ +. +|++++|+||+++|++... ....+.....+|+++|+.+..+++. ..+
T Consensus 120 ~~~~~Y~~sK~a~~~~~~~la~e~-~~--gi~v~~i~Pg~v~t~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~---~~~ 192 (199)
T PRK07578 120 PGGASAATVNGALEGFVKAAALEL-PR--GIRINVVSPTVLTESLEKY-GPFFPGFEPVPAARVALAYVRSVEG---AQT 192 (199)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHc-cC--CeEEEEEcCCcccCchhhh-hhcCCCCCCCCHHHHHHHHHHHhcc---cee
Confidence 778899999999999999999999 66 8999999999999987432 1112334457999999998888863 467
Q ss_pred Cceee
Q 023441 270 GKFFA 274 (282)
Q Consensus 270 g~~~~ 274 (282)
|+.|.
T Consensus 193 g~~~~ 197 (199)
T PRK07578 193 GEVYK 197 (199)
T ss_pred eEEec
Confidence 77765
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=224.95 Aligned_cols=220 Identities=17% Similarity=0.194 Sum_probs=181.9
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+.++|+++||||+++||++++++|+++|++ |++.+|+.+..+...+.....+.++.++++|++|.+++.++++++.+.
T Consensus 7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (274)
T PRK07775 7 HPDRRPALVAGASSGIGAATAIELAAAGFP--VALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEA 84 (274)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 566799999999999999999999999987 888899876655444444444567889999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|++|||+|... .....+.+.+.+++.+++|+.+++++++.+.+.+.+++.+ +||++||..+..
T Consensus 85 ~~~id~vi~~Ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g------~iv~isS~~~~~ 151 (274)
T PRK07775 85 LGEIEVLVSGAGDTY-------FGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRG------DLIFVGSDVALR 151 (274)
T ss_pred cCCCCEEEECCCcCC-------CcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc------eEEEECChHhcC
Confidence 999999999999864 3455566778899999999999999999999988766544 899999987765
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC--------------CCCCCCCCh
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN--------------VPEGKLFTK 250 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~--------------~~~~~~~~~ 250 (282)
+ .+....|+++|++++.+++.++.++.+. +|++++++||+++|++....... ........+
T Consensus 152 ~---~~~~~~Y~~sK~a~~~l~~~~~~~~~~~--gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (274)
T PRK07775 152 Q---RPHMGAYGAAKAGLEAMVTNLQMELEGT--GVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAKWGQARHDYFLRA 226 (274)
T ss_pred C---CCCcchHHHHHHHHHHHHHHHHHHhccc--CeEEEEEeCCcccCcccccCChhhhhHHHHHHHHhcccccccccCH
Confidence 5 4556789999999999999999999877 89999999999998864321110 112346799
Q ss_pred HHHHHHHHHHHhhc
Q 023441 251 EFSVQKLLNIINNI 264 (282)
Q Consensus 251 ~~~a~~~~~~~~~~ 264 (282)
+++|+.++++++..
T Consensus 227 ~dva~a~~~~~~~~ 240 (274)
T PRK07775 227 SDLARAITFVAETP 240 (274)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999999754
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=221.26 Aligned_cols=232 Identities=27% Similarity=0.400 Sum_probs=187.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc--ccccccccccCC-CceeEEEeeCCC-hhHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG--ATGLLDLKNRFP-ERLDVLQLDLTV-ESTIEASAK 99 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~--~~~~~~~~~~~~-~~v~~~~~Dls~-~~~~~~~~~ 99 (282)
+++++|+++||||++|||+++|+.|+++|++ |++..|+.+. .+...+.....+ ..+.+.++|+++ .++++.+++
T Consensus 1 ~~~~~~~ilITGas~GiG~aia~~l~~~G~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~ 78 (251)
T COG1028 1 MDLSGKVALVTGASSGIGRAIARALAREGAR--VVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVA 78 (251)
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCe--EEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHH
Confidence 3578999999999999999999999999998 8888887665 233332222112 368889999998 999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCc-ccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPE-TTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
.+.+.+|++|++|||||... . .+..+.+.++|++.+++|+.+.+.+++.+.|.+.++ +||++|
T Consensus 79 ~~~~~~g~id~lvnnAg~~~-------~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~---------~Iv~is 142 (251)
T COG1028 79 AAEEEFGRIDILVNNAGIAG-------PDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQ---------RIVNIS 142 (251)
T ss_pred HHHHHcCCCCEEEECCCCCC-------CCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhC---------eEEEEC
Confidence 99999999999999999975 3 467778889999999999999999999888887732 899999
Q ss_pred ccccccCCCCCCC-cccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCC-----------CCCC
Q 023441 179 ARVGSIGDNRLGG-WHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNV-----------PEGK 246 (282)
Q Consensus 179 s~~~~~~~~~~~~-~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~-----------~~~~ 246 (282)
|..+. . .+. +..|++||+++.+|+++++.|+.+. +|++++|+||+++|++.+...... +..+
T Consensus 143 S~~~~-~---~~~~~~~Y~~sK~al~~~~~~l~~e~~~~--gi~v~~v~PG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (251)
T COG1028 143 SVAGL-G---GPPGQAAYAASKAALIGLTKALALELAPR--GIRVNAVAPGYIDTPMTAALESAELEALKRLAARIPLGR 216 (251)
T ss_pred Cchhc-C---CCCCcchHHHHHHHHHHHHHHHHHHHhhh--CcEEEEEEeccCCCcchhhhhhhhhhHHHHHHhcCCCCC
Confidence 99887 6 344 5899999999999999999999988 899999999999999877433221 2225
Q ss_pred CCChHHHHHHHHHHHhhc-CCCCCCceeecCCcc
Q 023441 247 LFTKEFSVQKLLNIINNI-KSHDNGKFFAWDGQE 279 (282)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~-~~~~~g~~~~~d~~~ 279 (282)
...|.+++..+.++.... ....+|..+.+|++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 250 (251)
T COG1028 217 LGTPEEVAAAVAFLASDEAASYITGQTLPVDGGL 250 (251)
T ss_pred CcCHHHHHHHHHHHcCcchhccccCCEEEeCCCC
Confidence 557888888887666443 456778777777654
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=224.88 Aligned_cols=209 Identities=23% Similarity=0.336 Sum_probs=174.7
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|++|||||++|||++++++|+++|++ |++++|+.+..+.+.. ..+.++.+|++|.++++++++.+.+.++++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 73 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYE--VWATARKAEDVEALAA------AGFTAVQLDVNDGAALARLAEELEAEHGGL 73 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHH------CCCeEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999987 9999998765443221 246789999999999999999999999999
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|++|||+|... ..+..+.+.+++++.+++|+.+++.+++.+.|.+.++. | ++|++||..+..+
T Consensus 74 d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g------~iv~isS~~~~~~--- 136 (274)
T PRK05693 74 DVLINNAGYGA-------MGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSR-G------LVVNIGSVSGVLV--- 136 (274)
T ss_pred CEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-C------EEEEECCccccCC---
Confidence 99999999864 45566677899999999999999999999999987542 3 8999999888766
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCC--------C---------------CC
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNV--------P---------------EG 245 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~--------~---------------~~ 245 (282)
.+....|+++|++++.++++++.|+++. +|+|++++||+++|++.+...... + ..
T Consensus 137 ~~~~~~Y~~sK~al~~~~~~l~~e~~~~--gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (274)
T PRK05693 137 TPFAGAYCASKAAVHALSDALRLELAPF--GVQVMEVQPGAIASQFASNASREAEQLLAEQSPWWPLREHIQARARASQD 214 (274)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhh--CeEEEEEecCccccccccccccchhhcCCCCCccHHHHHHHHHHHHhccC
Confidence 5667889999999999999999999887 899999999999999866422110 0 01
Q ss_pred CCCChHHHHHHHHHHHhhc
Q 023441 246 KLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~ 264 (282)
...+|+++++.++..+...
T Consensus 215 ~~~~~~~~a~~i~~~~~~~ 233 (274)
T PRK05693 215 NPTPAAEFARQLLAAVQQS 233 (274)
T ss_pred CCCCHHHHHHHHHHHHhCC
Confidence 2357999999999888743
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=220.88 Aligned_cols=222 Identities=20% Similarity=0.272 Sum_probs=180.1
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++++||||++|||.+++++|+++|++ |++.+|++++++.+...+ +.++.++++|++|.++++++++++.+.++++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 75 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHK--VIATGRRQERLQELKDEL---GDNLYIAQLDVRNRAAIEEMLASLPAEWRNI 75 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHh---ccceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 999999887655443332 4578999999999999999999999999999
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|++|||+|... ...+..+.+.+.+++++++|+.+++.+++.+.+.+.+++.+ ++|++||..+..+
T Consensus 76 d~vi~~ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~isS~~~~~~--- 140 (248)
T PRK10538 76 DVLVNNAGLAL------GLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHG------HIINIGSTAGSWP--- 140 (248)
T ss_pred CEEEECCCccC------CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc------EEEEECCcccCCC---
Confidence 99999999753 12345566778999999999999999999999999876554 8999999887655
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--cccC-------CCCCCCCChHHHHHHHHH
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--FQRN-------VPEGKLFTKEFSVQKLLN 259 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--~~~~-------~~~~~~~~~~~~a~~~~~ 259 (282)
.++...|+++|++++.+++.++.++.+. +|++++|+||.+.+..... +... .......+|+++|+.+++
T Consensus 141 ~~~~~~Y~~sK~~~~~~~~~l~~~~~~~--~i~v~~v~pg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~ 218 (248)
T PRK10538 141 YAGGNVYGATKAFVRQFSLNLRTDLHGT--AVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWW 218 (248)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhcCC--CcEEEEEeCCeecccccchhhccCcHHHHHhhccccCCCCHHHHHHHHHH
Confidence 5667799999999999999999999887 8999999999998443221 1110 112244689999999999
Q ss_pred HHhhcCCCCCCce
Q 023441 260 IINNIKSHDNGKF 272 (282)
Q Consensus 260 ~~~~~~~~~~g~~ 272 (282)
+++.......+..
T Consensus 219 l~~~~~~~~~~~~ 231 (248)
T PRK10538 219 VATLPAHVNINTL 231 (248)
T ss_pred HhcCCCcccchhh
Confidence 9986655444443
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=250.74 Aligned_cols=237 Identities=20% Similarity=0.274 Sum_probs=201.1
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
..+.||++|||||+||||++++++|+++|++ |++++|+.+..+...+.+... .++.++.+|++|+++++++++++.+
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~--Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGAC--VVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCE--EEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999999987 999999987766554444332 5789999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.+|++|++|||+|... ..+..+.+.+.|+..+++|+.+++.+++.+.+.+++++.+ ++||++||..+.
T Consensus 495 ~~g~iDvvI~~AG~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~-----g~iV~vsS~~~~ 562 (681)
T PRK08324 495 AFGGVDIVVSNAGIAI-------SGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLG-----GSIVFIASKNAV 562 (681)
T ss_pred HcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-----cEEEEECCcccc
Confidence 9999999999999875 4566677889999999999999999999999999886542 389999998877
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccc--cCCCCccc--------------------ccC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTV--DTDLSRPF--------------------QRN 241 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v--~t~~~~~~--------------------~~~ 241 (282)
.+ .++...|+++|++++.+++.++.++++. +|+++.|+||.+ .|++..+. ...
T Consensus 563 ~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gIrvn~v~Pg~v~~~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 637 (681)
T PRK08324 563 NP---GPNFGAYGAAKAAELHLVRQLALELGPD--GIRVNGVNPDAVVRGSGIWTGEWIEARAAAYGLSEEELEEFYRAR 637 (681)
T ss_pred CC---CCCcHHHHHHHHHHHHHHHHHHHHhccc--CeEEEEEeCceeecCCccccchhhhhhhhhccCChHHHHHHHHhc
Confidence 65 5667899999999999999999999987 899999999999 78764321 112
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 242 VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+......++++++.+++++++.....+|..+.+||+..
T Consensus 638 ~~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdgG~~ 676 (681)
T PRK08324 638 NLLKREVTPEDVAEAVVFLASGLLSKTTGAIITVDGGNA 676 (681)
T ss_pred CCcCCccCHHHHHHHHHHHhCccccCCcCCEEEECCCch
Confidence 233456789999999999997666788999999999863
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=251.93 Aligned_cols=219 Identities=22% Similarity=0.242 Sum_probs=184.8
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||+++||||++|||++++++|+++|++ |++++|+.+.++++.+.+...+.++.++++|++|.++++++++++.+.
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGAT--VFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 678999999999999999999999999987 999999987776655555444668999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCccccccc--chhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKV--EKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~--~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++|++|||||... .....+. ..++++..+++|+.+++.+++.+.|.|++++.| +||++||..+
T Consensus 446 ~g~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g------~iv~isS~~~ 512 (657)
T PRK07201 446 HGHVDYLVNNAGRSI-------RRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFG------HVVNVSSIGV 512 (657)
T ss_pred cCCCCEEEECCCCCC-------CCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC------EEEEECChhh
Confidence 999999999999763 1222111 246789999999999999999999999877655 9999999987
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHh
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIIN 262 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 262 (282)
..+ .+....|+++|+++++|+++++.|+.+. +|++++|+||+++|++....... ......+|+++|+.++..+.
T Consensus 513 ~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--~i~v~~v~pg~v~T~~~~~~~~~-~~~~~~~~~~~a~~i~~~~~ 586 (657)
T PRK07201 513 QTN---APRFSAYVASKAALDAFSDVAASETLSD--GITFTTIHMPLVRTPMIAPTKRY-NNVPTISPEEAADMVVRAIV 586 (657)
T ss_pred cCC---CCCcchHHHHHHHHHHHHHHHHHHHHhh--CCcEEEEECCcCcccccCccccc-cCCCCCCHHHHHHHHHHHHH
Confidence 765 5667889999999999999999999987 89999999999999987653221 22345799999999998876
Q ss_pred hc
Q 023441 263 NI 264 (282)
Q Consensus 263 ~~ 264 (282)
..
T Consensus 587 ~~ 588 (657)
T PRK07201 587 EK 588 (657)
T ss_pred hC
Confidence 43
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=218.88 Aligned_cols=210 Identities=26% Similarity=0.319 Sum_probs=180.5
Q ss_pred hhHHHhhhhhhhhcccc-ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeE
Q 023441 5 LFAFRSIRKVAFTSSAS-ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDV 83 (282)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~ 83 (282)
+.++-.++.+....... ..-+..+|.|+||||-+|+|+.+|++|.++|.. |.+.+.+++..+.+..+.. .++...
T Consensus 5 l~~~~~l~~~~~~~~~~~~~~~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~--V~Agcl~~~gae~L~~~~~--s~rl~t 80 (322)
T KOG1610|consen 5 LAGLLLLYLLLRVRLERQVLDSLSDKAVLITGCDSGFGRLLAKKLDKKGFR--VFAGCLTEEGAESLRGETK--SPRLRT 80 (322)
T ss_pred HHHHHHHHHHHHHHHhhhcccccCCcEEEEecCCcHHHHHHHHHHHhcCCE--EEEEeecCchHHHHhhhhc--CCccee
Confidence 44444444444443332 345678899999999999999999999999987 9999988888776665554 468899
Q ss_pred EEeeCCChhHHHHHHHHHHHHcC--CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhh
Q 023441 84 LQLDLTVESTIEASAKSIKEKYG--SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLK 161 (282)
Q Consensus 84 ~~~Dls~~~~~~~~~~~~~~~~~--~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~ 161 (282)
++.|++++++++++.+.+++..+ .+=+||||||+.. ..++.+..+.+++++.+++|++|++.+++.++|.++
T Consensus 81 ~~LDVT~~esi~~a~~~V~~~l~~~gLwglVNNAGi~~------~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr 154 (322)
T KOG1610|consen 81 LQLDVTKPESVKEAAQWVKKHLGEDGLWGLVNNAGISG------FLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLR 154 (322)
T ss_pred EeeccCCHHHHHHHHHHHHHhcccccceeEEecccccc------ccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999874 4999999999875 466777888999999999999999999999999998
Q ss_pred cCCCCCccceeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc
Q 023441 162 VGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236 (282)
Q Consensus 162 ~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~ 236 (282)
+++. +||++||..|..+ .|....|++||+|++.|+.++++|+.+. ||.|.+|.||.++|++.+
T Consensus 155 ~arG-------RvVnvsS~~GR~~---~p~~g~Y~~SK~aVeaf~D~lR~EL~~f--GV~VsiiePG~f~T~l~~ 217 (322)
T KOG1610|consen 155 RARG-------RVVNVSSVLGRVA---LPALGPYCVSKFAVEAFSDSLRRELRPF--GVKVSIIEPGFFKTNLAN 217 (322)
T ss_pred hccC-------eEEEecccccCcc---CcccccchhhHHHHHHHHHHHHHHHHhc--CcEEEEeccCccccccCC
Confidence 8763 9999999999877 7788999999999999999999999999 899999999999999875
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=217.60 Aligned_cols=236 Identities=25% Similarity=0.391 Sum_probs=195.6
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc-ccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG-ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~-~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++.|++|||||+++||.+++++|+++|++ |++..|...+ .+...+.....+.++.++.+|++|+++++++++++.+
T Consensus 3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (249)
T PRK12825 3 SLMGRVALVTGAARGLGRAIALRLARAGAD--VVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVE 80 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCe--EEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHH
Confidence 355689999999999999999999999997 7776665543 2333344444456799999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||+|... .....+.+.+.++..+++|+.+.+++++.+.+.+.+.+.+ +++++||..+.
T Consensus 81 ~~~~id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~~i~~SS~~~~ 147 (249)
T PRK12825 81 RFGRIDILVNNAGIFE-------DKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGG------RIVNISSVAGL 147 (249)
T ss_pred HcCCCCEEEECCccCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC------EEEEECccccC
Confidence 9999999999999764 4445566778899999999999999999999998876543 89999998877
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------CCCCCCCCChHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------NVPEGKLFTKEFSVQ 255 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~~~~~~~~~~~~~a~ 255 (282)
.+ .+....|+.+|++++.+++.++.++.+. ++++++++||.+.|++...... ..+.....++++++.
T Consensus 148 ~~---~~~~~~y~~sK~~~~~~~~~~~~~~~~~--~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~ 222 (249)
T PRK12825 148 PG---WPGRSNYAAAKAGLVGLTKALARELAEY--GITVNMVAPGDIDTDMKEATIEEAREAKDAETPLGRSGTPEDIAR 222 (249)
T ss_pred CC---CCCchHHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEEECCccCCccccccchhHHhhhccCCCCCCcCHHHHHH
Confidence 55 5567889999999999999999999877 8999999999999998654321 233445678999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCccc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+.++++......+|+.+.++++.-
T Consensus 223 ~~~~~~~~~~~~~~g~~~~i~~g~~ 247 (249)
T PRK12825 223 AVAFLCSDASDYITGQVIEVTGGVD 247 (249)
T ss_pred HHHHHhCccccCcCCCEEEeCCCEe
Confidence 9999998777788999999998753
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=221.06 Aligned_cols=229 Identities=19% Similarity=0.246 Sum_probs=181.3
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC-cccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN-GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~-~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++||+++||||++|||++++++|+++|++ |++.+|+.. ..+...+.++..+.++.++++|++|+++++++++++.+
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~--V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAH--VVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCE--EEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999987 888888764 33333333333456789999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|++|||+|... .. ...+...+++|+.+++++++.+.+.|.+. +++|++||..+.
T Consensus 81 ~~~~~d~vi~~ag~~~-------~~------~~~~~~~~~vn~~~~~~l~~~~~~~~~~~--------~~iv~isS~~~~ 139 (248)
T PRK07806 81 EFGGLDALVLNASGGM-------ES------GMDEDYAMRLNRDAQRNLARAALPLMPAG--------SRVVFVTSHQAH 139 (248)
T ss_pred hCCCCcEEEECCCCCC-------CC------CCCcceeeEeeeHHHHHHHHHHHhhccCC--------ceEEEEeCchhh
Confidence 9999999999998642 11 01245678999999999999999988542 278899886543
Q ss_pred c-CC-CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------CCCCCCCCChH
Q 023441 184 I-GD-NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------NVPEGKLFTKE 251 (282)
Q Consensus 184 ~-~~-~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------~~~~~~~~~~~ 251 (282)
. +. .+.+.+..|+++|++++.+++.++.|+++. +|++++|.||++.|++...+.. ..+.....+|+
T Consensus 140 ~~~~~~~~~~~~~Y~~sK~a~e~~~~~l~~~~~~~--~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (248)
T PRK07806 140 FIPTVKTMPEYEPVARSKRAGEDALRALRPELAEK--GIGFVVVSGDMIEGTVTATLLNRLNPGAIEARREAAGKLYTVS 217 (248)
T ss_pred cCccccCCccccHHHHHHHHHHHHHHHHHHHhhcc--CeEEEEeCCccccCchhhhhhccCCHHHHHHHHhhhcccCCHH
Confidence 2 21 234456789999999999999999999988 8999999999999876543211 12234677999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+|+.+.++++. ...+|+.+.++|+++
T Consensus 218 dva~~~~~l~~~--~~~~g~~~~i~~~~~ 244 (248)
T PRK07806 218 EFAAEVARAVTA--PVPSGHIEYVGGADY 244 (248)
T ss_pred HHHHHHHHHhhc--cccCccEEEecCccc
Confidence 999999999983 577999999988765
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=221.90 Aligned_cols=216 Identities=24% Similarity=0.357 Sum_probs=180.9
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
++++|||||+++||.+++++|+++|++ |++++|+..+.+...+.+...+.++.++.+|++|.+++.++++++.+++++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~--Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQ--LVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 578999999999999999999999987 999999977665554444444668999999999999999999999999999
Q ss_pred ccEEEECcccCCCCCCCCCccccccc-chhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKV-EKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
+|++|||+|... .....+. +.+.+++.+++|+.+++++++.+.+.+.++. +++|++||..+..+
T Consensus 79 id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-------~~iv~~sS~~~~~~- 143 (263)
T PRK06181 79 IDILVNNAGITM-------WSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASR-------GQIVVVSSLAGLTG- 143 (263)
T ss_pred CCEEEECCCccc-------ccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-------CEEEEEecccccCC-
Confidence 999999999864 3445555 7788999999999999999999999886543 28999999877655
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC-------CC--CCCCCChHHHHHHH
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN-------VP--EGKLFTKEFSVQKL 257 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~-------~~--~~~~~~~~~~a~~~ 257 (282)
.++...|+++|++++.++++++.++.+. +++++++.||++.|++.+..... .+ .....+|+++++.+
T Consensus 144 --~~~~~~Y~~sK~~~~~~~~~l~~~~~~~--~i~~~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i 219 (263)
T PRK06181 144 --VPTRSGYAASKHALHGFFDSLRIELADD--GVAVTVVCPGFVATDIRKRALDGDGKPLGKSPMQESKIMSAEECAEAI 219 (263)
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHhhhc--CceEEEEecCccccCcchhhccccccccccccccccCCCCHHHHHHHH
Confidence 5567899999999999999999999887 89999999999999986532211 11 12567999999999
Q ss_pred HHHHhhc
Q 023441 258 LNIINNI 264 (282)
Q Consensus 258 ~~~~~~~ 264 (282)
++++...
T Consensus 220 ~~~~~~~ 226 (263)
T PRK06181 220 LPAIARR 226 (263)
T ss_pred HHHhhCC
Confidence 9999753
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=218.05 Aligned_cols=212 Identities=18% Similarity=0.259 Sum_probs=177.6
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccc-ccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK-NRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~-~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
|+++||||++|||.+++++|+++|++ |++++|+.++.+...+.. ...+.+++++++|++|+++++++++++.+ +
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~--Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~ 76 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGAR--LYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPA---L 76 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCE--EEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhh---c
Confidence 78999999999999999999999987 999999987665543332 22345899999999999999999998765 4
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++|||+|... .....+.+.+++.+.+++|+.+++.+++.+.|.|.+++.+ +++++||..+..+
T Consensus 77 ~d~vv~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~~sS~~~~~~-- 141 (243)
T PRK07102 77 PDIVLIAVGTLG-------DQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSG------TIVGISSVAGDRG-- 141 (243)
T ss_pred CCEEEECCcCCC-------CcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCC------EEEEEecccccCC--
Confidence 799999999864 3445566778899999999999999999999999876654 8999999887666
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhcC
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 265 (282)
.++...|+++|+++++++++++.|+.+. ++++++|+||+++|++.+... .+.....+|+++++.++..+....
T Consensus 142 -~~~~~~Y~~sK~a~~~~~~~l~~el~~~--gi~v~~v~pg~v~t~~~~~~~--~~~~~~~~~~~~a~~i~~~~~~~~ 214 (243)
T PRK07102 142 -RASNYVYGSAKAALTAFLSGLRNRLFKS--GVHVLTVKPGFVRTPMTAGLK--LPGPLTAQPEEVAKDIFRAIEKGK 214 (243)
T ss_pred -CCCCcccHHHHHHHHHHHHHHHHHhhcc--CcEEEEEecCcccChhhhccC--CCccccCCHHHHHHHHHHHHhCCC
Confidence 5667789999999999999999999887 899999999999999765432 234456789999999999988654
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=217.97 Aligned_cols=206 Identities=23% Similarity=0.262 Sum_probs=169.7
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++++||||++|||++++++|+++|++ |++.+|+++.++.+.+. ..++.+++||++|.++++++++++.. .+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~--V~~~~r~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 72 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQ--VIACGRNQSVLDELHTQ----SANIFTLAFDVTDHPGTKAALSQLPF---IP 72 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCE--EEEEECCHHHHHHHHHh----cCCCeEEEeeCCCHHHHHHHHHhccc---CC
Confidence 78999999999999999999999988 99999987665443322 34688999999999999999887643 47
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|.+|||+|... ..+..+.+.+.|++.+++|+.+++++++.+.|.|.+. .+++++||..+..+
T Consensus 73 d~~i~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--------~~iv~isS~~~~~~--- 134 (240)
T PRK06101 73 ELWIFNAGDCE-------YMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCG--------HRVVIVGSIASELA--- 134 (240)
T ss_pred CEEEEcCcccc-------cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--------CeEEEEechhhccC---
Confidence 99999999753 2223346778899999999999999999999988542 27899999887766
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhcC
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 265 (282)
.++...|+++|++++.|++.++.|+.+. ++++++++||++.|++.+..... .....+|+++++.++..+....
T Consensus 135 ~~~~~~Y~asK~a~~~~~~~l~~e~~~~--gi~v~~v~pg~i~t~~~~~~~~~--~~~~~~~~~~a~~i~~~i~~~~ 207 (240)
T PRK06101 135 LPRAEAYGASKAAVAYFARTLQLDLRPK--GIEVVTVFPGFVATPLTDKNTFA--MPMIITVEQASQEIRAQLARGK 207 (240)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHhc--CceEEEEeCCcCCCCCcCCCCCC--CCcccCHHHHHHHHHHHHhcCC
Confidence 5677899999999999999999999888 89999999999999986653222 2234689999999999887643
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=213.55 Aligned_cols=227 Identities=23% Similarity=0.314 Sum_probs=186.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|.+++++++||||+++||.+++++|+++|++ |++++|++++.....+.+... .+++++++|++|.+++.++++++.+
T Consensus 2 ~~~~~~~ilItGatg~iG~~la~~l~~~g~~--V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (237)
T PRK07326 2 MSLKGKVALITGGSKGIGFAIAEALLAEGYK--VAITARDQKELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVA 78 (237)
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHCCCE--EEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999987 999999887665544433332 5789999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||+|... ..+..+.+.+.+++.+++|+.+++.+++.+.+.+.+ +. +++|++||..+.
T Consensus 79 ~~~~~d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~------~~iv~~ss~~~~ 144 (237)
T PRK07326 79 AFGGLDVLIANAGVGH-------FAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKR-GG------GYIINISSLAGT 144 (237)
T ss_pred HcCCCCEEEECCCCCC-------CCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHH-CC------eEEEEECChhhc
Confidence 9999999999999764 445566778889999999999999999999998833 22 389999998776
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhh
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
.+ ..+...|+++|+++..+++.++.++... ++++++++||++.|++....... ......+++++++.+++++..
T Consensus 145 ~~---~~~~~~y~~sk~a~~~~~~~~~~~~~~~--gi~v~~v~pg~~~t~~~~~~~~~-~~~~~~~~~d~a~~~~~~l~~ 218 (237)
T PRK07326 145 NF---FAGGAAYNASKFGLVGFSEAAMLDLRQY--GIKVSTIMPGSVATHFNGHTPSE-KDAWKIQPEDIAQLVLDLLKM 218 (237)
T ss_pred cC---CCCCchHHHHHHHHHHHHHHHHHHhccc--CcEEEEEeeccccCcccccccch-hhhccCCHHHHHHHHHHHHhC
Confidence 54 5567789999999999999999999877 89999999999999876543221 112236899999999999987
Q ss_pred cCCCCCCcee
Q 023441 264 IKSHDNGKFF 273 (282)
Q Consensus 264 ~~~~~~g~~~ 273 (282)
......+...
T Consensus 219 ~~~~~~~~~~ 228 (237)
T PRK07326 219 PPRTLPSKIE 228 (237)
T ss_pred CccccccceE
Confidence 6555544443
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=217.52 Aligned_cols=213 Identities=23% Similarity=0.365 Sum_probs=175.7
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
.|++|||||+++||++++++|+++|++ |++.+|+.+..+.+.+. .+.++.++++|++|.++++++++++.+.+++
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~--v~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDR--VAATVRRPDALDDLKAR---YGDRLWVLQLDVTDSAAVRAVVDRAFAALGR 76 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHh---ccCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 479999999999999999999999987 99999987655443332 2457899999999999999999999999999
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++|||+|... ..+..+.+.+++++.+++|+.+++++++.+.|.+++++.+ ++|++||..+..+
T Consensus 77 id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~------~iv~~sS~~~~~~-- 141 (276)
T PRK06482 77 IDVVVSNAGYGL-------FGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGG------RIVQVSSEGGQIA-- 141 (276)
T ss_pred CCEEEECCCCCC-------CcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC------EEEEEcCcccccC--
Confidence 999999999875 4455566778899999999999999999999998876554 8999999877655
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCC--------------------CCCCC
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNV--------------------PEGKL 247 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~--------------------~~~~~ 247 (282)
.++...|+++|++++.++++++.++.+. +++++.++||.+.|++........ +....
T Consensus 142 -~~~~~~Y~~sK~a~~~~~~~l~~~~~~~--gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (276)
T PRK06482 142 -YPGFSLYHATKWGIEGFVEAVAQEVAPF--GIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGSFAIP 218 (276)
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHhhcc--CcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhccCCCC
Confidence 5677899999999999999999999887 899999999999988754322110 00112
Q ss_pred CChHHHHHHHHHHHhh
Q 023441 248 FTKEFSVQKLLNIINN 263 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~ 263 (282)
.++++++++++..+..
T Consensus 219 ~d~~~~~~a~~~~~~~ 234 (276)
T PRK06482 219 GDPQKMVQAMIASADQ 234 (276)
T ss_pred CCHHHHHHHHHHHHcC
Confidence 4789999998888753
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=212.67 Aligned_cols=232 Identities=22% Similarity=0.276 Sum_probs=183.1
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC-ccccccccccc-CCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN-GATGLLDLKNR-FPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~-~~~~~~~~~~~-~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..+++++|||||+++||++++++|+++|++ |++++|+.. ..+...+.+.. .+..+.++.+|++|.+++.++++++.
T Consensus 3 ~~~~~~vlItGa~g~iG~~l~~~l~~~g~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 80 (249)
T PRK09135 3 TDSAKVALITGGARRIGAAIARTLHAAGYR--VAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACV 80 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 356799999999999999999999999987 888888643 33333222222 23468899999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|++|||+|... ..+..+.+.++++..+++|+.+++.+++++.+.+.+.+ +.++++++..+
T Consensus 81 ~~~~~~d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-------~~~~~~~~~~~ 146 (249)
T PRK09135 81 AAFGRLDALVNNASSFY-------PTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQR-------GAIVNITDIHA 146 (249)
T ss_pred HHcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCC-------eEEEEEeChhh
Confidence 99999999999999864 33444556678999999999999999999999886543 27788777655
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---------CCCCCCCCChHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR---------NVPEGKLFTKEFS 253 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---------~~~~~~~~~~~~~ 253 (282)
..+ .++...|+++|++++.+++.++.++.+ +++++++.||++.|+....... ..+.....+++++
T Consensus 147 ~~~---~~~~~~Y~~sK~~~~~~~~~l~~~~~~---~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 220 (249)
T PRK09135 147 ERP---LKGYPVYCAAKAALEMLTRSLALELAP---EVRVNAVAPGAILWPEDGNSFDEEARQAILARTPLKRIGTPEDI 220 (249)
T ss_pred cCC---CCCchhHHHHHHHHHHHHHHHHHHHCC---CCeEEEEEeccccCccccccCCHHHHHHHHhcCCcCCCcCHHHH
Confidence 433 566789999999999999999999854 6999999999999987542111 1222344579999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++++++++.. ....+|..+.++++.
T Consensus 221 a~~~~~~~~~-~~~~~g~~~~i~~g~ 245 (249)
T PRK09135 221 AEAVRFLLAD-ASFITGQILAVDGGR 245 (249)
T ss_pred HHHHHHHcCc-cccccCcEEEECCCe
Confidence 9999877754 446799999988765
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=214.64 Aligned_cols=215 Identities=20% Similarity=0.233 Sum_probs=174.1
Q ss_pred EEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccEE
Q 023441 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLL 111 (282)
Q Consensus 32 lItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~l 111 (282)
+||||++|||++++++|+++|++ |++++|+.+..+...+.++. +.+++++.+|++|++++++++++ ++++|++
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~--v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~----~~~id~l 73 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGAR--VTIASRSRDRLAAAARALGG-GAPVRTAALDITDEAAVDAFFAE----AGPFDHV 73 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHhc-CCceEEEEccCCCHHHHHHHHHh----cCCCCEE
Confidence 69999999999999999999987 99999987665544333322 45788999999999999988875 4789999
Q ss_pred EECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCCC
Q 023441 112 INASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGG 191 (282)
Q Consensus 112 v~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~ 191 (282)
|||+|... ..+..+.+.+.+++.+++|+.+++.+.+ .+.+.+ . ++||++||..+..+ .+.
T Consensus 74 i~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~--~~~~~~--~------g~iv~~ss~~~~~~---~~~ 133 (230)
T PRK07041 74 VITAADTP-------GGPVRALPLAAAQAAMDSKFWGAYRVAR--AARIAP--G------GSLTFVSGFAAVRP---SAS 133 (230)
T ss_pred EECCCCCC-------CCChhhCCHHHHHHHHHHHHHHHHHHHh--hhhhcC--C------eEEEEECchhhcCC---CCc
Confidence 99999874 3455667788999999999999999999 333432 2 38999999988766 566
Q ss_pred cccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc------------CCCCCCCCChHHHHHHHHH
Q 023441 192 WHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR------------NVPEGKLFTKEFSVQKLLN 259 (282)
Q Consensus 192 ~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~------------~~~~~~~~~~~~~a~~~~~ 259 (282)
...|+++|+++++++++++.|+. ++++++++||+++|++.....+ ..+.....+|+++|+.+++
T Consensus 134 ~~~Y~~sK~a~~~~~~~la~e~~----~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ 209 (230)
T PRK07041 134 GVLQGAINAALEALARGLALELA----PVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLPARRVGQPEDVANAILF 209 (230)
T ss_pred chHHHHHHHHHHHHHHHHHHHhh----CceEEEEeecccccHHHHhhhccchHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 78899999999999999999986 4899999999999987543211 1223345679999999999
Q ss_pred HHhhcCCCCCCceeecCCcc
Q 023441 260 IINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 260 ~~~~~~~~~~g~~~~~d~~~ 279 (282)
+++. ...+|+.+.++|++
T Consensus 210 l~~~--~~~~G~~~~v~gg~ 227 (230)
T PRK07041 210 LAAN--GFTTGSTVLVDGGH 227 (230)
T ss_pred HhcC--CCcCCcEEEeCCCe
Confidence 9974 57899999999885
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=212.09 Aligned_cols=232 Identities=16% Similarity=0.194 Sum_probs=186.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||+++||||+++||.++++.|+++|++ |++.+|+.++.+.+.+..... .+++++++|+++.++++++++++..
T Consensus 1 ~~~~~~~vlItGa~g~iG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (238)
T PRK05786 1 MRLKGKKVAIIGVSEGLGYAVAYFALKEGAQ--VCINSRNENKLKRMKKTLSKY-GNIHYVVGDVSSTESARNVIEKAAK 77 (238)
T ss_pred CCcCCcEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhc-CCeEEEECCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999998 999999887665443333221 3688999999999999999999998
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|.+++|+|... ..+..+ .+.++..+++|+.+++.+.+.+.|.+.+. + .+|++||..+.
T Consensus 78 ~~~~id~ii~~ag~~~-------~~~~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~------~iv~~ss~~~~ 140 (238)
T PRK05786 78 VLNAIDGLVVTVGGYV-------EDTVEE--FSGLEEMLTNHIKIPLYAVNASLRFLKEG--S------SIVLVSSMSGI 140 (238)
T ss_pred HhCCCCEEEEcCCCcC-------CCchHH--HHHHHHHHHHhchHHHHHHHHHHHHHhcC--C------EEEEEecchhc
Confidence 8999999999999753 222222 37789999999999999999999988643 2 78889987664
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--ccCCC-CCCCCChHHHHHHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--QRNVP-EGKLFTKEFSVQKLLNI 260 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--~~~~~-~~~~~~~~~~a~~~~~~ 260 (282)
.. +.+....|+++|++++.+++.++.++... ++++++++||++.|++.... ....+ .....+++++++.+.++
T Consensus 141 ~~--~~~~~~~Y~~sK~~~~~~~~~~~~~~~~~--gi~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ 216 (238)
T PRK05786 141 YK--ASPDQLSYAVAKAGLAKAVEILASELLGR--GIRVNGIAPTTISGDFEPERNWKKLRKLGDDMAPPEDFAKVIIWL 216 (238)
T ss_pred cc--CCCCchHHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCccCCCCCchhhhhhhccccCCCCCHHHHHHHHHHH
Confidence 32 24556789999999999999999999877 89999999999999864321 11011 12356899999999999
Q ss_pred HhhcCCCCCCceeecCCcc
Q 023441 261 INNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 261 ~~~~~~~~~g~~~~~d~~~ 279 (282)
+.+.....+|..+.+|++.
T Consensus 217 ~~~~~~~~~g~~~~~~~~~ 235 (238)
T PRK05786 217 LTDEADWVDGVVIPVDGGA 235 (238)
T ss_pred hcccccCccCCEEEECCcc
Confidence 9876678899999998764
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=208.91 Aligned_cols=221 Identities=32% Similarity=0.506 Sum_probs=179.8
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|+++||||+++||.+++++|+++|++ |++++|+.+..+.+.. ..+.++.+|++|.++++++++++.. +++
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~--v~~~~r~~~~~~~~~~------~~~~~~~~D~~~~~~v~~~~~~~~~--~~~ 71 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWR--VIATARDAAALAALQA------LGAEALALDVADPASVAGLAWKLDG--EAL 71 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCE--EEEEECCHHHHHHHHh------ccceEEEecCCCHHHHHHHHHHhcC--CCC
Confidence 68999999999999999999999987 8999998765543222 1356899999999999998876643 479
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|++|||+|.... ......+.+.++++..+++|+.+++.+++.+.|.|.++ .| .++++||..+..+..+
T Consensus 72 d~vi~~ag~~~~-----~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~g------~iv~isS~~~~~~~~~ 139 (222)
T PRK06953 72 DAAVYVAGVYGP-----RTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAA-GG------VLAVLSSRMGSIGDAT 139 (222)
T ss_pred CEEEECCCcccC-----CCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhcc-CC------eEEEEcCccccccccc
Confidence 999999998631 12334456788999999999999999999999988653 22 7899999877665433
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhcCCCC
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIKSHD 268 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 268 (282)
......|+++|++++.+++.++.++. ++++++|+||+++|++... ...+.+++.++.++.++.......
T Consensus 140 ~~~~~~Y~~sK~a~~~~~~~~~~~~~----~i~v~~v~Pg~i~t~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 208 (222)
T PRK06953 140 GTTGWLYRASKAALNDALRAASLQAR----HATCIALHPGWVRTDMGGA-------QAALDPAQSVAGMRRVIAQATRRD 208 (222)
T ss_pred CCCccccHHhHHHHHHHHHHHhhhcc----CcEEEEECCCeeecCCCCC-------CCCCCHHHHHHHHHHHHHhcCccc
Confidence 32234699999999999999998863 7999999999999998543 224688999999999988888899
Q ss_pred CCceeecCCcccCC
Q 023441 269 NGKFFAWDGQEIPW 282 (282)
Q Consensus 269 ~g~~~~~d~~~~~~ 282 (282)
+|.++.+|++.+.|
T Consensus 209 ~~~~~~~~~~~~~~ 222 (222)
T PRK06953 209 NGRFFQYDGVELSW 222 (222)
T ss_pred CceEEeeCCcCCcC
Confidence 99999999998877
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=203.94 Aligned_cols=237 Identities=19% Similarity=0.242 Sum_probs=202.8
Q ss_pred ccccCcEEEEecC--CCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGA--SRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGa--s~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..++||++||+|- ...|++.+|+.|+++|++ +.....++.-.+.+.++.+..++ ..+++||+++.+++.++++++
T Consensus 2 g~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAe--L~fTy~~e~l~krv~~la~~~~s-~~v~~cDV~~d~~i~~~f~~i 78 (259)
T COG0623 2 GLLEGKRILIMGVANNRSIAWGIAKALAEQGAE--LAFTYQGERLEKRVEELAEELGS-DLVLPCDVTNDESIDALFATI 78 (259)
T ss_pred CccCCceEEEEEecccccHHHHHHHHHHHcCCE--EEEEeccHHHHHHHHHHHhhccC-CeEEecCCCCHHHHHHHHHHH
Confidence 4689999999995 469999999999999998 88888877333334555544433 577999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
++++|++|+|||+-++.+.. .-.+.+.+.+.+.|...+++..++...+.+++.|.|...+ .++.+|-..
T Consensus 79 ~~~~g~lD~lVHsIaFa~k~---el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~gg--------SiltLtYlg 147 (259)
T COG0623 79 KKKWGKLDGLVHSIAFAPKE---ELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGG--------SILTLTYLG 147 (259)
T ss_pred HHhhCcccEEEEEeccCChH---HhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCC--------cEEEEEecc
Confidence 99999999999999998521 1134566688999999999999999999999999998743 899999988
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc----------ccccCCCCCCCCChH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR----------PFQRNVPEGKLFTKE 251 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~----------~~~~~~~~~~~~~~~ 251 (282)
+.+. .|.+...+.+|++++.-+|.||.+++++ +||||.|.-|++.|=... ....+.|..+..++|
T Consensus 148 s~r~---vPnYNvMGvAKAaLEasvRyLA~dlG~~--gIRVNaISAGPIrTLAasgI~~f~~~l~~~e~~aPl~r~vt~e 222 (259)
T COG0623 148 SERV---VPNYNVMGVAKAALEASVRYLAADLGKE--GIRVNAISAGPIRTLAASGIGDFRKMLKENEANAPLRRNVTIE 222 (259)
T ss_pred ceee---cCCCchhHHHHHHHHHHHHHHHHHhCcc--CeEEeeecccchHHHHhhccccHHHHHHHHHhhCCccCCCCHH
Confidence 8777 7778899999999999999999999999 999999999999886322 334467888899999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+|.....+++++.++.++|+.+-+|.|.
T Consensus 223 eVG~tA~fLlSdLssgiTGei~yVD~G~ 250 (259)
T COG0623 223 EVGNTAAFLLSDLSSGITGEIIYVDSGY 250 (259)
T ss_pred HhhhhHHHHhcchhcccccceEEEcCCc
Confidence 9999999999999999999999999875
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=210.74 Aligned_cols=229 Identities=26% Similarity=0.396 Sum_probs=188.5
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC-CcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~-~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
+||||++++||.+++++|+++|++ |++.+|+. ...+...+.....+.+++++.+|++|+++++++++.+.++++++|
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAK--VIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPID 78 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999987 88888876 333333333344456789999999999999999999999999999
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCC
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRL 189 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~ 189 (282)
++|||+|... .....+.+.+.++..+++|+.+.+.+.+.+.+.+.+.+.+ +++++||..+..+ .
T Consensus 79 ~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~~v~~sS~~~~~g---~ 142 (239)
T TIGR01830 79 ILVNNAGITR-------DNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSG------RIINISSVVGLMG---N 142 (239)
T ss_pred EEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCe------EEEEECCccccCC---C
Confidence 9999999864 3334456678899999999999999999999988665443 8999999887766 5
Q ss_pred CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------CCCCCCCCChHHHHHHHHHHH
Q 023441 190 GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------NVPEGKLFTKEFSVQKLLNII 261 (282)
Q Consensus 190 ~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~~~~~~~~~~~~~a~~~~~~~ 261 (282)
+....|+++|++++.+++.++.++... +++++++.||+++|++...... ..+.....+++++++.++.++
T Consensus 143 ~~~~~y~~~k~a~~~~~~~l~~~~~~~--g~~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 220 (239)
T TIGR01830 143 AGQANYAASKAGVIGFTKSLAKELASR--NITVNAVAPGFIDTDMTDKLSEKVKKKILSQIPLGRFGTPEEVANAVAFLA 220 (239)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhc--CeEEEEEEECCCCChhhhhcChHHHHHHHhcCCcCCCcCHHHHHHHHHHHh
Confidence 667899999999999999999998877 8999999999999887543221 223345668999999999999
Q ss_pred hhcCCCCCCceeecCCcc
Q 023441 262 NNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 262 ~~~~~~~~g~~~~~d~~~ 279 (282)
.......+|++++++++.
T Consensus 221 ~~~~~~~~g~~~~~~~g~ 238 (239)
T TIGR01830 221 SDEASYITGQVIHVDGGM 238 (239)
T ss_pred CcccCCcCCCEEEeCCCc
Confidence 766667899999998774
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=205.32 Aligned_cols=164 Identities=33% Similarity=0.547 Sum_probs=146.4
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC--CCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN--PNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~--~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
|+++||||++|||++++++|+++|+. +|++++|+ .+..+++...+...+.++.++++|++++++++++++++.++++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~-~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGAR-VVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTE-EEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCce-EEEEeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999775 58999998 4445555555555568999999999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++|||+|... ..+..+.+.++|++.+++|+.+++.+.+.+.| ++. +.||++||..+..+
T Consensus 80 ~ld~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~----~~~------g~iv~~sS~~~~~~- 141 (167)
T PF00106_consen 80 PLDILINNAGIFS-------DGSLDDLSEEELERVFRVNLFGPFLLAKALLP----QGG------GKIVNISSIAGVRG- 141 (167)
T ss_dssp SESEEEEECSCTT-------SBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH----HTT------EEEEEEEEGGGTSS-
T ss_pred ccccccccccccc-------ccccccccchhhhhccccccceeeeeeehhee----ccc------cceEEecchhhccC-
Confidence 9999999999985 67788889999999999999999999999999 222 49999999999877
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHh
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEF 213 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~ 213 (282)
.++...|+++|+++.+|+++++.|+
T Consensus 142 --~~~~~~Y~askaal~~~~~~la~e~ 166 (167)
T PF00106_consen 142 --SPGMSAYSASKAALRGLTQSLAAEL 166 (167)
T ss_dssp --STTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCChhHHHHHHHHHHHHHHHHHhc
Confidence 7888999999999999999999986
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=213.22 Aligned_cols=217 Identities=19% Similarity=0.243 Sum_probs=180.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccc-ccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK-NRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~-~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+-.|++++|||||.|||++.|++||++|.+ |++++|++++++.+.+++ +.++-+++++.+|+++.+.+-+.+.+..
T Consensus 45 ~~~~g~WAVVTGaTDGIGKayA~eLAkrG~n--vvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l 122 (312)
T KOG1014|consen 45 KEKLGSWAVVTGATDGIGKAYARELAKRGFN--VVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKL 122 (312)
T ss_pred HHhcCCEEEEECCCCcchHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHh
Confidence 3345799999999999999999999999998 999999999999866544 4555689999999999887333333222
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+. .+|-+||||+|.... .+..+.+.+.+.+++.+++|..+...+.+.++|.|.+++.| .|+|++|..|
T Consensus 123 ~~-~~VgILVNNvG~~~~-----~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G------~IvnigS~ag 190 (312)
T KOG1014|consen 123 AG-LDVGILVNNVGMSYD-----YPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKG------IIVNIGSFAG 190 (312)
T ss_pred cC-CceEEEEecccccCC-----CcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCc------eEEEeccccc
Confidence 22 268899999999852 13455666666899999999999999999999999998877 9999999999
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHh
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIIN 262 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 262 (282)
..+ .+.++.|+++|+++..|+++|+.|+..+ +|.|-++.|..|.|+|.+..+ +....++|+..++..+.-+.
T Consensus 191 ~~p---~p~~s~ysasK~~v~~~S~~L~~Ey~~~--gI~Vq~v~p~~VaTkm~~~~~---~sl~~ps~~tfaksal~tiG 262 (312)
T KOG1014|consen 191 LIP---TPLLSVYSASKAFVDFFSRCLQKEYESK--GIFVQSVIPYLVATKMAKYRK---PSLFVPSPETFAKSALNTIG 262 (312)
T ss_pred ccc---ChhHHHHHHHHHHHHHHHHHHHHHHHhc--CeEEEEeehhheeccccccCC---CCCcCcCHHHHHHHHHhhcC
Confidence 887 8899999999999999999999999999 899999999999999977533 34455688888888777665
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=211.38 Aligned_cols=209 Identities=24% Similarity=0.394 Sum_probs=168.3
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH-HHHHc--
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS-IKEKY-- 105 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~-~~~~~-- 105 (282)
.++|||||++|||++++++|+++|++ |++++|+..+.. ....+.++.++++|++|.+++++++++ +.+.+
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~--v~~~~r~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 74 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIA--VLGVARSRHPSL-----AAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVD 74 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCE--EEEEecCcchhh-----hhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhcc
Confidence 37999999999999999999999987 888898865321 122345789999999999999998876 55554
Q ss_pred -CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 106 -GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 106 -~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
+++|++|||+|... +..+..+.+.+.+++.+++|+.+++.+++.+.+.+.+++.+ +||++||..+..
T Consensus 75 ~~~~~~~v~~ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~isS~~~~~ 142 (243)
T PRK07023 75 GASRVLLINNAGTVE------PIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAER------RILHISSGAARN 142 (243)
T ss_pred CCCceEEEEcCcccC------CCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCC------EEEEEeChhhcC
Confidence 47999999999864 22445566789999999999999999999999999876554 999999988765
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------------cCCCCCCCCCh
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------------RNVPEGKLFTK 250 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------------~~~~~~~~~~~ 250 (282)
+ .+++..|+++|++++.+++.++.+ .+. +|++++|+||+++|++..... ...+.....+|
T Consensus 143 ~---~~~~~~Y~~sK~a~~~~~~~~~~~-~~~--~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (243)
T PRK07023 143 A---YAGWSVYCATKAALDHHARAVALD-ANR--ALRIVSLAPGVVDTGMQATIRATDEERFPMRERFRELKASGALSTP 216 (243)
T ss_pred C---CCCchHHHHHHHHHHHHHHHHHhc-CCC--CcEEEEecCCccccHHHHHHHhcccccchHHHHHHHhhhcCCCCCH
Confidence 5 667889999999999999999999 555 899999999999998754221 11123456789
Q ss_pred HHHHHHHHHHHh
Q 023441 251 EFSVQKLLNIIN 262 (282)
Q Consensus 251 ~~~a~~~~~~~~ 262 (282)
+++|+.++..+.
T Consensus 217 ~~va~~~~~~l~ 228 (243)
T PRK07023 217 EDAARRLIAYLL 228 (243)
T ss_pred HHHHHHHHHHHh
Confidence 999996665554
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=206.86 Aligned_cols=207 Identities=29% Similarity=0.473 Sum_probs=175.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCC-CcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKND-KGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~-~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|++++|+++||||+++||+++|++|+++|+ + |++.+|+.++.++ .+.++.++.+|++|.++++++++.
T Consensus 2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~--V~~~~r~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~-- 70 (238)
T PRK08264 2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAK--VYAAARDPESVTD-------LGPRVVPLQLDVTDPASVAAAAEA-- 70 (238)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCccc--EEEEecChhhhhh-------cCCceEEEEecCCCHHHHHHHHHh--
Confidence 678899999999999999999999999998 6 9999998766442 346899999999999998887764
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++|++|||+|... ...+..+.+.+.+.+.+++|+.+++.+.+++.+.+.+++.+ +++++||..+
T Consensus 71 --~~~id~vi~~ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~~v~~sS~~~ 136 (238)
T PRK08264 71 --ASDVTILVNNAGIFR------TGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGG------AIVNVLSVLS 136 (238)
T ss_pred --cCCCCEEEECCCcCC------CCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC------EEEEEcChhh
Confidence 468999999999842 24455667789999999999999999999999998876554 8999999887
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHh
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIIN 262 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 262 (282)
..+ .++...|+++|++++.+++.++.++.+. +++++++.||.++|++...... ...+++++++.++..+.
T Consensus 137 ~~~---~~~~~~y~~sK~a~~~~~~~l~~~~~~~--~i~~~~v~pg~v~t~~~~~~~~-----~~~~~~~~a~~~~~~~~ 206 (238)
T PRK08264 137 WVN---FPNLGTYSASKAAAWSLTQALRAELAPQ--GTRVLGVHPGPIDTDMAAGLDA-----PKASPADVARQILDALE 206 (238)
T ss_pred ccC---CCCchHhHHHHHHHHHHHHHHHHHhhhc--CeEEEEEeCCcccccccccCCc-----CCCCHHHHHHHHHHHHh
Confidence 655 5677889999999999999999999887 8999999999999998654321 25688999999998887
Q ss_pred hcC
Q 023441 263 NIK 265 (282)
Q Consensus 263 ~~~ 265 (282)
...
T Consensus 207 ~~~ 209 (238)
T PRK08264 207 AGD 209 (238)
T ss_pred CCC
Confidence 654
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-30 Score=202.49 Aligned_cols=185 Identities=23% Similarity=0.282 Sum_probs=165.3
Q ss_pred cCcEEEEecCC-CchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH-H
Q 023441 27 KGGVSLVQGAS-RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE-K 104 (282)
Q Consensus 27 ~gk~vlItGas-~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~-~ 104 (282)
+-|.+|||||+ ||||.+++++|+++|+. |+.++|..+...++... ..+....+|+++++++..+..++++ .
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~--V~AtaR~~e~M~~L~~~-----~gl~~~kLDV~~~~~V~~v~~evr~~~ 78 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYL--VYATARRLEPMAQLAIQ-----FGLKPYKLDVSKPEEVVTVSGEVRANP 78 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeE--EEEEccccchHhhHHHh-----hCCeeEEeccCChHHHHHHHHHHhhCC
Confidence 35899999985 79999999999999987 99999998886654322 2588999999999999999999999 7
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
+|++|+|+||||... ..|..+.+.+..+..|++|++|++.+++++...+.+.+. .|||+.|..+..
T Consensus 79 ~Gkld~L~NNAG~~C-------~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKG-------tIVnvgSl~~~v 144 (289)
T KOG1209|consen 79 DGKLDLLYNNAGQSC-------TFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKG-------TIVNVGSLAGVV 144 (289)
T ss_pred CCceEEEEcCCCCCc-------ccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccc-------eEEEecceeEEe
Confidence 799999999999985 777888889999999999999999999999988776653 999999999988
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP 237 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~ 237 (282)
+ .+-.+.|++||+|++.+++.|+.|+++. ||+|..+.||.+.|++...
T Consensus 145 p---fpf~~iYsAsKAAihay~~tLrlEl~PF--gv~Vin~itGGv~T~Ia~k 192 (289)
T KOG1209|consen 145 P---FPFGSIYSASKAAIHAYARTLRLELKPF--GVRVINAITGGVATDIADK 192 (289)
T ss_pred c---cchhhhhhHHHHHHHHhhhhcEEeeecc--ccEEEEecccceecccccC
Confidence 7 6777899999999999999999999999 9999999999999998664
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=205.59 Aligned_cols=217 Identities=18% Similarity=0.222 Sum_probs=189.5
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc-cCC-CceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN-RFP-ERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~-~~~-~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+.++||||++|||+++|+++.++|++ |.++.|+.+++.++...++ .+. ..+.+..+|++|-+++..+++++++.++
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~--Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~ 111 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGAD--VTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEG 111 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCc--eEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccC
Confidence 79999999999999999999999999 9999999998877554443 111 2488999999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeeccccccC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~~~~~~ 185 (282)
.+|.+|+|||... .+.+.+.+++.++..+++|++++++++++..+.|++.. .| +|+.+||..+..+
T Consensus 112 ~~d~l~~cAG~~v-------~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g------~I~~vsS~~a~~~ 178 (331)
T KOG1210|consen 112 PIDNLFCCAGVAV-------PGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLG------RIILVSSQLAMLG 178 (331)
T ss_pred CcceEEEecCccc-------ccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCc------EEEEehhhhhhcC
Confidence 9999999999985 67788889999999999999999999999999999865 44 9999999999988
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCC--------CCCCChHHHHHHH
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE--------GKLFTKEFSVQKL 257 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~--------~~~~~~~~~a~~~ 257 (282)
..++.+|+++|+|+.+|...++.|+.++ +|+|....|+.++||.+++-....|+ ....++|++|.++
T Consensus 179 ---i~GysaYs~sK~alrgLa~~l~qE~i~~--~v~Vt~~~P~~~~tpGfE~En~tkP~~t~ii~g~ss~~~~e~~a~~~ 253 (331)
T KOG1210|consen 179 ---IYGYSAYSPSKFALRGLAEALRQELIKY--GVHVTLYYPPDTLTPGFERENKTKPEETKIIEGGSSVIKCEEMAKAI 253 (331)
T ss_pred ---cccccccccHHHHHHHHHHHHHHHHhhc--ceEEEEEcCCCCCCCccccccccCchheeeecCCCCCcCHHHHHHHH
Confidence 7889999999999999999999999999 89999999999999988765444443 3446889999998
Q ss_pred HHHHhhcC
Q 023441 258 LNIINNIK 265 (282)
Q Consensus 258 ~~~~~~~~ 265 (282)
+.-+..+.
T Consensus 254 ~~~~~rg~ 261 (331)
T KOG1210|consen 254 VKGMKRGN 261 (331)
T ss_pred HhHHhhcC
Confidence 87665543
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=202.68 Aligned_cols=214 Identities=24% Similarity=0.347 Sum_probs=176.7
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc-C
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY-G 106 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~-~ 106 (282)
.|+++||||+++||++++++|+++|++ |++++|+.++.+.+.+ ..++++++|++|.++++.+++.+.+.. +
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g~~--v~~~~r~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 73 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRGYR--VLAACRKPDDVARMNS------LGFTGILLDLDDPESVERAADEVIALTDN 73 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCHHHhHHHHh------CCCeEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 378999999999999999999999987 8999998866543321 147889999999999999999988754 6
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|+++||+|... ..+..+.+.+++++.+++|+.|++.+.+.+.+.+.+.+.+ .++++||.++..+
T Consensus 74 ~~~~ii~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~------~iv~~ss~~~~~~- 139 (256)
T PRK08017 74 RLYGLFNNAGFGV-------YGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEG------RIVMTSSVMGLIS- 139 (256)
T ss_pred CCeEEEECCCCCC-------ccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCC------EEEEEcCcccccC-
Confidence 8999999999764 3455667788999999999999999999999999876554 8999999887765
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC---CC-------CCCCCChHHHHHH
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN---VP-------EGKLFTKEFSVQK 256 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~---~~-------~~~~~~~~~~a~~ 256 (282)
.+....|+++|++++.++++++.++... ++++++++||++.|++.+..... .+ .....+|+++++.
T Consensus 140 --~~~~~~Y~~sK~~~~~~~~~l~~~~~~~--~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~ 215 (256)
T PRK08017 140 --TPGRGAYAASKYALEAWSDALRMELRHS--GIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVPK 215 (256)
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHHhhc--CCEEEEEeCCCcccchhhcccchhhccchhhhHHHhhcCCCHHHHHHH
Confidence 5677889999999999999999999887 89999999999999876543211 11 1234789999999
Q ss_pred HHHHHhhcCCC
Q 023441 257 LLNIINNIKSH 267 (282)
Q Consensus 257 ~~~~~~~~~~~ 267 (282)
+...++.....
T Consensus 216 ~~~~~~~~~~~ 226 (256)
T PRK08017 216 LRHALESPKPK 226 (256)
T ss_pred HHHHHhCCCCC
Confidence 99999876543
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=203.72 Aligned_cols=210 Identities=23% Similarity=0.249 Sum_probs=170.8
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
+|++|||||++|||++++++|+++|++ |++.+|+....+.+.+.....+.++.++.+|++|++++.++++ ++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------~~ 73 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHN--VIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAE------WD 73 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhc------CC
Confidence 689999999999999999999999987 9999998766555555444445678999999999998887654 37
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++|||+|... ..+..+.+.+.++..+++|+.+++.+.+.+++.+.+++.+ +||++||..+..+
T Consensus 74 id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~iv~~SS~~~~~~-- 138 (257)
T PRK09291 74 VDVLLNNAGIGE-------AGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKG------KVVFTSSMAGLIT-- 138 (257)
T ss_pred CCEEEECCCcCC-------CcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------eEEEEcChhhccC--
Confidence 999999999874 4566677888999999999999999999999998876654 8999999887665
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----C-------------CCCCCCCCh
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----N-------------VPEGKLFTK 250 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----~-------------~~~~~~~~~ 250 (282)
.++...|+++|++++.+++.++.++.+. ++++++++||++.|++...... . .......++
T Consensus 139 -~~~~~~Y~~sK~a~~~~~~~l~~~~~~~--gi~~~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
T PRK09291 139 -GPFTGAYCASKHALEAIAEAMHAELKPF--GIQVATVNPGPYLTGFNDTMAETPKRWYDPARNFTDPEDLAFPLEQFDP 215 (257)
T ss_pred -CCCcchhHHHHHHHHHHHHHHHHHHHhc--CcEEEEEecCcccccchhhhhhhhhhhcchhhHHHhhhhhhccccCCCH
Confidence 4566789999999999999999999887 8999999999999987432110 0 001123578
Q ss_pred HHHHHHHHHHHhh
Q 023441 251 EFSVQKLLNIINN 263 (282)
Q Consensus 251 ~~~a~~~~~~~~~ 263 (282)
++++..+..++..
T Consensus 216 ~~~~~~~~~~l~~ 228 (257)
T PRK09291 216 QEMIDAMVEVIPA 228 (257)
T ss_pred HHHHHHHHHHhcC
Confidence 8888888887753
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-28 Score=193.88 Aligned_cols=230 Identities=21% Similarity=0.271 Sum_probs=188.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.+|++|+||+|.|||..++..+.+++.+..+++..|..... ..+...+++.......|+++..-+.++.+..+.+.+
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~~---~~L~v~~gd~~v~~~g~~~e~~~l~al~e~~r~k~g 81 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAEL---EGLKVAYGDDFVHVVGDITEEQLLGALREAPRKKGG 81 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhcccccc---cceEEEecCCcceechHHHHHHHHHHHHhhhhhcCC
Confidence 46899999999999999999999999885555555555443 333334456677788999999989999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccc--cccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeeccccc
Q 023441 107 SLNLLINASGILSIPNVLQPETTL--NKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARVGS 183 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~--~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~~~~ 183 (282)
+.|++|||||..+ +.... +..+.+.|.+.++.|+++...+.+.++|.++++. . +.+||+||.+..
T Consensus 82 kr~iiI~NAG~lg------dvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~------~~vVnvSS~aav 149 (253)
T KOG1204|consen 82 KRDIIIHNAGSLG------DVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVN------GNVVNVSSLAAV 149 (253)
T ss_pred ceeEEEecCCCcc------chhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCcc------CeEEEecchhhh
Confidence 9999999999986 23322 3667789999999999999999999999998873 3 389999999988
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCC--------------CCCCCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNV--------------PEGKLFT 249 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~--------------~~~~~~~ 249 (282)
.+ +.++++|+++|+|.++|.+.||.|-. . +|++.++.||.+||+|....+... ...+..+
T Consensus 150 ~p---~~~wa~yc~~KaAr~m~f~~lA~EEp-~--~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el~~~~~ll~ 223 (253)
T KOG1204|consen 150 RP---FSSWAAYCSSKAARNMYFMVLASEEP-F--DVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKELKESGQLLD 223 (253)
T ss_pred cc---ccHHHHhhhhHHHHHHHHHHHhhcCc-c--ceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHHHhcCCcCC
Confidence 77 89999999999999999999999865 4 899999999999999976443332 2356778
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
|...|+.+..++...- ..+|+++.+...
T Consensus 224 ~~~~a~~l~~L~e~~~-f~sG~~vdy~D~ 251 (253)
T KOG1204|consen 224 PQVTAKVLAKLLEKGD-FVSGQHVDYYDE 251 (253)
T ss_pred hhhHHHHHHHHHHhcC-cccccccccccc
Confidence 9999999888887654 889999887654
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-27 Score=197.61 Aligned_cols=204 Identities=19% Similarity=0.220 Sum_probs=150.0
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
..+..++||+++||||++|||++++++|+++|++ |++++|+...... ... . ....++.+|++|.+++.+
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~~--Vi~~~r~~~~~~~--~~~-~--~~~~~~~~D~~~~~~~~~---- 75 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGAK--VIGLTHSKINNSE--SND-E--SPNEWIKWECGKEESLDK---- 75 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCE--EEEEECCchhhhh--hhc-c--CCCeEEEeeCCCHHHHHH----
Confidence 3445678999999999999999999999999987 8889998632111 111 1 123678999999987753
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
.++++|++|||||... . .+.+.++|++.+++|+.+++.+++.+.|.|.+++.+ .++.++..||.
T Consensus 76 ---~~~~iDilVnnAG~~~-------~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~---~g~~iiv~ss~ 139 (245)
T PRK12367 76 ---QLASLDVLILNHGINP-------G---GRQDPENINKALEINALSSWRLLELFEDIALNNNSQ---IPKEIWVNTSE 139 (245)
T ss_pred ---hcCCCCEEEECCccCC-------c---CCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccC---CCeEEEEEecc
Confidence 4578999999999753 1 134578899999999999999999999999764210 01234444555
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHH---HHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLT---KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKL 257 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~---~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~ 257 (282)
.+..+ +....|++||+++..+. +.++.|+.+. ++++++++||+++|++.. ....+|+++|+.+
T Consensus 140 a~~~~----~~~~~Y~aSKaal~~~~~l~~~l~~e~~~~--~i~v~~~~pg~~~t~~~~--------~~~~~~~~vA~~i 205 (245)
T PRK12367 140 AEIQP----ALSPSYEISKRLIGQLVSLKKNLLDKNERK--KLIIRKLILGPFRSELNP--------IGIMSADFVAKQI 205 (245)
T ss_pred cccCC----CCCchhHHHHHHHHHHHHHHHHHHHhhccc--ccEEEEecCCCcccccCc--------cCCCCHHHHHHHH
Confidence 55432 24567999999986544 3444455556 899999999999998732 2356899999999
Q ss_pred HHHHhhcC
Q 023441 258 LNIINNIK 265 (282)
Q Consensus 258 ~~~~~~~~ 265 (282)
++.+....
T Consensus 206 ~~~~~~~~ 213 (245)
T PRK12367 206 LDQANLGL 213 (245)
T ss_pred HHHHhcCC
Confidence 99997654
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=198.53 Aligned_cols=195 Identities=23% Similarity=0.265 Sum_probs=159.7
Q ss_pred HHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccEEEECcccCCCCCC
Q 023441 44 FAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNV 123 (282)
Q Consensus 44 ~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~ 123 (282)
+|++|+++|++ |++.+|+.++.+ ...++++|++|.++++++++++. +++|+||||||...
T Consensus 1 ~a~~l~~~G~~--Vv~~~r~~~~~~-----------~~~~~~~Dl~~~~~v~~~~~~~~---~~iD~li~nAG~~~---- 60 (241)
T PRK12428 1 TARLLRFLGAR--VIGVDRREPGMT-----------LDGFIQADLGDPASIDAAVAALP---GRIDALFNIAGVPG---- 60 (241)
T ss_pred ChHHHHhCCCE--EEEEeCCcchhh-----------hhHhhcccCCCHHHHHHHHHHhc---CCCeEEEECCCCCC----
Confidence 47899999988 999999876531 13568999999999999988764 68999999999752
Q ss_pred CCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC-----------------
Q 023441 124 LQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD----------------- 186 (282)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~----------------- 186 (282)
. +.++..+++|+.+++.+++.+.|.|.++ | +||++||..+....
T Consensus 61 ---~--------~~~~~~~~vN~~~~~~l~~~~~~~~~~~--g------~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~ 121 (241)
T PRK12428 61 ---T--------APVELVARVNFLGLRHLTEALLPRMAPG--G------AIVNVASLAGAEWPQRLELHKALAATASFDE 121 (241)
T ss_pred ---C--------CCHHHhhhhchHHHHHHHHHHHHhccCC--c------EEEEeCcHHhhccccchHHHHhhhccchHHH
Confidence 1 2478899999999999999999998643 2 89999998875310
Q ss_pred -------CCCCCcccchhhHHHHHHHHHHHH-HHhccCCCCeEEEEEecccccCCCCccccc----------CCCCCCCC
Q 023441 187 -------NRLGGWHSYRASKAALNQLTKSVS-VEFGRKKDPVICILLHPGTVDTDLSRPFQR----------NVPEGKLF 248 (282)
Q Consensus 187 -------~~~~~~~~Y~~sKa~~~~l~~~la-~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------~~~~~~~~ 248 (282)
.+.++...|++||++++.++++++ .|++++ +|+||+|+||++.|++.+.... ..+..+..
T Consensus 122 ~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~e~~~~--girvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (241)
T PRK12428 122 GAAWLAAHPVALATGYQLSKEALILWTMRQAQPWFGAR--GIRVNCVAPGPVFTPILGDFRSMLGQERVDSDAKRMGRPA 199 (241)
T ss_pred HHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHhhhcc--CeEEEEeecCCccCcccccchhhhhhHhhhhcccccCCCC
Confidence 235667899999999999999999 999887 8999999999999998654221 12334456
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+|+++|+.+.+++++....++|+.+.+||++
T Consensus 200 ~pe~va~~~~~l~s~~~~~~~G~~i~vdgg~ 230 (241)
T PRK12428 200 TADEQAAVLVFLCSDAARWINGVNLPVDGGL 230 (241)
T ss_pred CHHHHHHHHHHHcChhhcCccCcEEEecCch
Confidence 8999999999999877789999999999985
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=186.38 Aligned_cols=217 Identities=23% Similarity=0.319 Sum_probs=171.4
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
.|++|||||+++||++++++|+++ ++ |++++|+.+..+...+.. ..++++.+|++|.++++++++.. ++
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~--V~~~~r~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~----~~ 71 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HT--LLLGGRPAERLDELAAEL----PGATPFPVDLTDPEAIAAAVEQL----GR 71 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CC--EEEEeCCHHHHHHHHHHh----ccceEEecCCCCHHHHHHHHHhc----CC
Confidence 589999999999999999999999 77 999999876543332221 25788999999999998887653 57
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++||++|... ..+..+.+.+.+.+.+++|+.+.+.+.+.+++.+.++. .+++++||..+..+
T Consensus 72 id~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-------~~~v~~ss~~~~~~-- 135 (227)
T PRK08219 72 LDVLVHNAGVAD-------LGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH-------GHVVFINSGAGLRA-- 135 (227)
T ss_pred CCEEEECCCcCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-------CeEEEEcchHhcCc--
Confidence 999999999864 34455667889999999999999999999999887653 28899999877655
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----CCCCCCCCChHHHHHHHHHHHhh
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----NVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
.++...|+.+|++++.+++.++.++... ++++++.||.+++++...+.. ..+...+.+++++++.++++++.
T Consensus 136 -~~~~~~y~~~K~a~~~~~~~~~~~~~~~---i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~l~~ 211 (227)
T PRK08219 136 -NPGWGSYAASKFALRALADALREEEPGN---VRVTSVHPGRTDTDMQRGLVAQEGGEYDPERYLRPETVAKAVRFAVDA 211 (227)
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHhcCC---ceEEEEecCCccchHhhhhhhhhccccCCCCCCCHHHHHHHHHHHHcC
Confidence 5567889999999999999999887642 999999999999886543221 12234567999999999999875
Q ss_pred cCCCCCCceeecCCc
Q 023441 264 IKSHDNGKFFAWDGQ 278 (282)
Q Consensus 264 ~~~~~~g~~~~~d~~ 278 (282)
.. ++..+....+
T Consensus 212 ~~---~~~~~~~~~~ 223 (227)
T PRK08219 212 PP---DAHITEVVVR 223 (227)
T ss_pred CC---CCccceEEEe
Confidence 43 4555554443
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-25 Score=196.97 Aligned_cols=203 Identities=20% Similarity=0.223 Sum_probs=151.3
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
+.++++||+++||||++|||++++++|+++|++ |++++|+.++.+... ......+..+.+|++|.+++.+.
T Consensus 172 ta~sl~gK~VLITGASgGIG~aLA~~La~~G~~--Vi~l~r~~~~l~~~~---~~~~~~v~~v~~Dvsd~~~v~~~---- 242 (406)
T PRK07424 172 TALSLKGKTVAVTGASGTLGQALLKELHQQGAK--VVALTSNSDKITLEI---NGEDLPVKTLHWQVGQEAALAEL---- 242 (406)
T ss_pred cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHH---hhcCCCeEEEEeeCCCHHHHHHH----
Confidence 346788999999999999999999999999988 888999876543211 11123577899999999877654
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
++++|++|||||... . .+.+.+++++.+++|+.|++.+++.+.|.|++++.+ .....++++|+ +
T Consensus 243 ---l~~IDiLInnAGi~~-------~---~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~--~~~~iiVn~Ss-a 306 (406)
T PRK07424 243 ---LEKVDILIINHGINV-------H---GERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDK--ATKEVWVNTSE-A 306 (406)
T ss_pred ---hCCCCEEEECCCcCC-------C---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCeEEEEEcc-c
Confidence 358999999999753 1 145678899999999999999999999999775421 11135677765 2
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 261 (282)
+. . .+..+.|++||+|+..++. ++++. . ++.+..+.||+++|++.. ...++||++|+.+++.+
T Consensus 307 ~~-~---~~~~~~Y~ASKaAl~~l~~-l~~~~--~--~~~I~~i~~gp~~t~~~~--------~~~~spe~vA~~il~~i 369 (406)
T PRK07424 307 EV-N---PAFSPLYELSKRALGDLVT-LRRLD--A--PCVVRKLILGPFKSNLNP--------IGVMSADWVAKQILKLA 369 (406)
T ss_pred cc-c---CCCchHHHHHHHHHHHHHH-HHHhC--C--CCceEEEEeCCCcCCCCc--------CCCCCHHHHHHHHHHHH
Confidence 22 2 2345679999999999985 44432 2 455566689999988631 23469999999999999
Q ss_pred hhcCC
Q 023441 262 NNIKS 266 (282)
Q Consensus 262 ~~~~~ 266 (282)
+..+.
T Consensus 370 ~~~~~ 374 (406)
T PRK07424 370 KRDFR 374 (406)
T ss_pred HCCCC
Confidence 87653
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=226.89 Aligned_cols=185 Identities=16% Similarity=0.217 Sum_probs=155.4
Q ss_pred cc-cCcEEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCc--------------c---------------------
Q 023441 25 KW-KGGVSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNG--------------A--------------------- 67 (282)
Q Consensus 25 ~~-~gk~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~--------------~--------------------- 67 (282)
.+ +|+++|||||++|||.++|++|+++ |++ |++++|+... +
T Consensus 1993 ~l~~g~vvLVTGGarGIG~aiA~~LA~~~ga~--viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~ 2070 (2582)
T TIGR02813 1993 ALNSDDVFLVTGGAKGVTFECALELAKQCQAH--FILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVD 2070 (2582)
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHhcCCE--EEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhh
Confidence 44 5899999999999999999999998 565 9999998210 0
Q ss_pred ------------cccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccch
Q 023441 68 ------------TGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEK 135 (282)
Q Consensus 68 ------------~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~ 135 (282)
.+..+.+.+.+.++.++.||++|.++++++++++.++ ++||+||||||+.. ...+.+.+.
T Consensus 2071 ~~~~~~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~-g~IDgVVhnAGv~~-------~~~i~~~t~ 2142 (2582)
T TIGR02813 2071 ALVRPVLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKT-LQITGIIHGAGVLA-------DKHIQDKTL 2142 (2582)
T ss_pred hcccccchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHh-CCCcEEEECCccCC-------CCCcccCCH
Confidence 0011122344668999999999999999999999887 68999999999875 556778889
Q ss_pred hhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhcc
Q 023441 136 SSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGR 215 (282)
Q Consensus 136 ~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~ 215 (282)
++|++.+++|+.|.+++++++.+.+.+ +||++||..+..+ .++...|+++|++++.+++.++.++.
T Consensus 2143 e~f~~v~~~nv~G~~~Ll~al~~~~~~----------~IV~~SSvag~~G---~~gqs~YaaAkaaL~~la~~la~~~~- 2208 (2582)
T TIGR02813 2143 EEFNAVYGTKVDGLLSLLAALNAENIK----------LLALFSSAAGFYG---NTGQSDYAMSNDILNKAALQLKALNP- 2208 (2582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC----------eEEEEechhhcCC---CCCcHHHHHHHHHHHHHHHHHHHHcC-
Confidence 999999999999999999998765432 8999999999887 56778999999999999999999874
Q ss_pred CCCCeEEEEEecccccCCCCc
Q 023441 216 KKDPVICILLHPGTVDTDLSR 236 (282)
Q Consensus 216 ~~~~i~v~~i~Pg~v~t~~~~ 236 (282)
+++|++|+||+++|+|..
T Consensus 2209 ---~irV~sI~wG~wdtgm~~ 2226 (2582)
T TIGR02813 2209 ---SAKVMSFNWGPWDGGMVN 2226 (2582)
T ss_pred ---CcEEEEEECCeecCCccc
Confidence 589999999999999864
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-24 Score=173.32 Aligned_cols=203 Identities=23% Similarity=0.366 Sum_probs=166.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCC---cEEEEeecCCCcccccccccccC-C---CceeEEEeeCCChhHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDK---GCVIATCRNPNGATGLLDLKNRF-P---ERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~---~~vi~~~r~~~~~~~~~~~~~~~-~---~~v~~~~~Dls~~~~~~~~~~ 99 (282)
.-|++||||+++|||.++|++|.+...+ .++++.+|+.++.+++...+..+ + .++.++.+|+|++.++.++..
T Consensus 2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~ 81 (341)
T KOG1478|consen 2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK 81 (341)
T ss_pred CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence 3589999999999999999999998766 77999999999998855443332 3 378999999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCC-----------------c---ccccccchhhhhhhhhhhhcHHHHHHHHhhhh
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQP-----------------E---TTLNKVEKSSLMLAYEVNAVGPILVIKHMSPL 159 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~-----------------~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 159 (282)
+++++|.++|.++.|||+...++..-. . ...-..+.+++...|+.|+.|+|.+.+.+.|.
T Consensus 82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl 161 (341)
T KOG1478|consen 82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL 161 (341)
T ss_pred HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence 999999999999999998865432100 0 11234566788899999999999999999999
Q ss_pred hhcCCCCCccceeEEEEeeccccccCC------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC
Q 023441 160 LKVGGTGIERDVAVVANLSARVGSIGD------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233 (282)
Q Consensus 160 l~~~~~g~~~~~~~iv~~ss~~~~~~~------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~ 233 (282)
+..+++. .+|.+||..+.-.. ....+..+|+.||.+.+.+.-++-+.+.+. |+.-++++||...|.
T Consensus 162 l~~~~~~------~lvwtSS~~a~kk~lsleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~--g~~qyvv~pg~~tt~ 233 (341)
T KOG1478|consen 162 LCHSDNP------QLVWTSSRMARKKNLSLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPL--GINQYVVQPGIFTTN 233 (341)
T ss_pred hhcCCCC------eEEEEeecccccccCCHHHHhhhcCCCCcchhHHHHHHHHHHHhcccccc--chhhhcccCceeecc
Confidence 9877653 89999998765432 123466789999999999999999999888 788888899999888
Q ss_pred CCcc
Q 023441 234 LSRP 237 (282)
Q Consensus 234 ~~~~ 237 (282)
+...
T Consensus 234 ~~~~ 237 (341)
T KOG1478|consen 234 SFSE 237 (341)
T ss_pred hhhh
Confidence 7553
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.5e-23 Score=163.65 Aligned_cols=176 Identities=20% Similarity=0.278 Sum_probs=143.6
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccc---cccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL---DLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~---~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
|+++||||+++||.+++++|+++|.. .|++.+|+.+..+... +.+++.+.++.++.+|++++++++++++++..++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGAR-HLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARL 79 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCC-eEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999999974 3777888776544321 2333445688899999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
+++|++|||+|... .....+.+.++++..+++|+.+++.+.+.+.+ .+. ++++++||..+..+
T Consensus 80 ~~id~li~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~------~~ii~~ss~~~~~~ 142 (180)
T smart00822 80 GPLRGVIHAAGVLD-------DGLLANLTPERFAAVLAPKVDGAWNLHELTRD----LPL------DFFVLFSSVAGVLG 142 (180)
T ss_pred CCeeEEEEccccCC-------ccccccCCHHHHHHhhchHhHHHHHHHHHhcc----CCc------ceEEEEccHHHhcC
Confidence 99999999999864 34456677888999999999999999998843 222 38999999887766
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEeccccc
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVD 231 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~ 231 (282)
.+....|+++|+++..+++.++.+ ++++++++||+++
T Consensus 143 ---~~~~~~y~~sk~~~~~~~~~~~~~------~~~~~~~~~g~~~ 179 (180)
T smart00822 143 ---NPGQANYAAANAFLDALAAHRRAR------GLPATSINWGAWA 179 (180)
T ss_pred ---CCCchhhHHHHHHHHHHHHHHHhc------CCceEEEeecccc
Confidence 566788999999999999877654 7779999999875
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=164.64 Aligned_cols=175 Identities=18% Similarity=0.272 Sum_probs=133.9
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC-c--ccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN-G--ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~-~--~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.+||||||++|||..++++|+++|.. +|++++|+.. . .....+.+.+.+.++++++||++|+++++++++++.+++
T Consensus 1 gtylitGG~gglg~~la~~La~~~~~-~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (181)
T PF08659_consen 1 GTYLITGGLGGLGQSLARWLAERGAR-RLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRF 79 (181)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT-S-EEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTS
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCC-EEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhcc
Confidence 38999999999999999999999975 7999999932 2 223455556667899999999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
++||++||++|... ..++.+.++++++..+...+.+.+++.+.+.+.-. .+++.+||+.+..+
T Consensus 80 ~~i~gVih~ag~~~-------~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l----------~~~i~~SSis~~~G 142 (181)
T PF08659_consen 80 GPIDGVIHAAGVLA-------DAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPL----------DFFILFSSISSLLG 142 (181)
T ss_dssp S-EEEEEE--------------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTT----------SEEEEEEEHHHHTT
T ss_pred CCcceeeeeeeeec-------ccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCC----------CeEEEECChhHhcc
Confidence 99999999999985 66788889999999999999999999999876222 29999999999888
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccc
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTV 230 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v 230 (282)
.++...|+++.+.++.|++..+.. +..+.+|+-|..
T Consensus 143 ---~~gq~~YaaAN~~lda~a~~~~~~------g~~~~sI~wg~W 178 (181)
T PF08659_consen 143 ---GPGQSAYAAANAFLDALARQRRSR------GLPAVSINWGAW 178 (181)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHT------TSEEEEEEE-EB
T ss_pred ---CcchHhHHHHHHHHHHHHHHHHhC------CCCEEEEEcccc
Confidence 678899999999999998876553 455666665543
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-20 Score=164.18 Aligned_cols=200 Identities=17% Similarity=0.176 Sum_probs=146.3
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++||++|||||+|+||++++++|+++|....|++.+|+......+..... ..++.++.+|++|.+++.++++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~--~~~~~~v~~Dl~d~~~l~~~~~------ 73 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFP--APCLRFFIGDVRDKERLTRALR------ 73 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhC--CCcEEEEEccCCCHHHHHHHHh------
Confidence 46899999999999999999999999722248888887654333222221 2478899999999999887765
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
++|++||+||... .+..+.+ ....+++|+.+++++++++.+. +. +++|++||....
T Consensus 74 -~iD~Vih~Ag~~~--------~~~~~~~---~~~~~~~Nv~g~~~ll~aa~~~----~~------~~iV~~SS~~~~-- 129 (324)
T TIGR03589 74 -GVDYVVHAAALKQ--------VPAAEYN---PFECIRTNINGAQNVIDAAIDN----GV------KRVVALSTDKAA-- 129 (324)
T ss_pred -cCCEEEECcccCC--------CchhhcC---HHHHHHHHHHHHHHHHHHHHHc----CC------CEEEEEeCCCCC--
Confidence 5899999999753 1111222 2357999999999999998753 21 289999986433
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc------c-cccC---CC------CCCCCC
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR------P-FQRN---VP------EGKLFT 249 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~------~-~~~~---~~------~~~~~~ 249 (282)
.+...|+++|++.+.+++.++.+++.. +++++++.||.+..+-.. . .... .+ ...+..
T Consensus 130 ----~p~~~Y~~sK~~~E~l~~~~~~~~~~~--gi~~~~lR~g~v~G~~~~~i~~~~~~~~~~~~~~~i~~~~~~r~~i~ 203 (324)
T TIGR03589 130 ----NPINLYGATKLASDKLFVAANNISGSK--GTRFSVVRYGNVVGSRGSVVPFFKSLKEEGVTELPITDPRMTRFWIT 203 (324)
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHhhcccc--CcEEEEEeecceeCCCCCcHHHHHHHHHhCCCCeeeCCCCceEeeEE
Confidence 223579999999999999988877776 899999999999865211 0 0001 11 123578
Q ss_pred hHHHHHHHHHHHhh
Q 023441 250 KEFSVQKLLNIINN 263 (282)
Q Consensus 250 ~~~~a~~~~~~~~~ 263 (282)
++++++.++.++..
T Consensus 204 v~D~a~a~~~al~~ 217 (324)
T TIGR03589 204 LEQGVNFVLKSLER 217 (324)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998875
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-20 Score=162.50 Aligned_cols=246 Identities=13% Similarity=0.069 Sum_probs=163.0
Q ss_pred cchhHHHhhhhhhhhcc--cc-ccccccCcEEEEecCCCchhHH--HHHHHHhcCCCcEEEEeecCCCccc---------
Q 023441 3 NSLFAFRSIRKVAFTSS--AS-ASVKWKGGVSLVQGASRGIGLE--FAKQLLEKNDKGCVIATCRNPNGAT--------- 68 (282)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--~~-~~~~~~gk~vlItGas~giG~a--~a~~la~~G~~~~vi~~~r~~~~~~--------- 68 (282)
+..++.+|-..|..-.. +. .+..-.||++||||+++|||.+ +|+.| ++|++ ++++++..++.+
T Consensus 13 ~~~hp~gc~~~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~--Vi~v~~~~~~~~~~~~tagwy 89 (398)
T PRK13656 13 TTAHPVGCEANVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGAD--TLGVFFEKPGTEKKTGTAGWY 89 (398)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCe--EEEEecCcchhhhcccccccc
Confidence 34455555555542222 11 1222347999999999999999 89999 99998 777775432211
Q ss_pred ---ccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccEEEECcccCCCCCC---------CCC-----ccc--
Q 023441 69 ---GLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNV---------LQP-----ETT-- 129 (282)
Q Consensus 69 ---~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~---------~~~-----~~~-- 129 (282)
...++..+.+.++..+.||+++.++++++++.+.+.+|+||+||||+|.....+. ..| .+.
T Consensus 90 ~~~a~~~~a~~~G~~a~~i~~DVss~E~v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~ 169 (398)
T PRK13656 90 NSAAFDKFAKAAGLYAKSINGDAFSDEIKQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTL 169 (398)
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcc
Confidence 1333444446678889999999999999999999999999999999998742220 000 000
Q ss_pred -----------ccccchhhhhhhhhhhhc---HHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCCCc--c
Q 023441 130 -----------LNKVEKSSLMLAYEVNAV---GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGW--H 193 (282)
Q Consensus 130 -----------~~~~~~~~~~~~~~~n~~---~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~--~ 193 (282)
+...+.++++.++.+.-- -.|.-.+...+.|.+. .+++.+|..+.... .+.+ .
T Consensus 170 d~~~~~i~~~s~~~~~~~ei~~Tv~vMggedw~~Wi~al~~a~lla~g--------~~~va~TY~G~~~t---~p~Y~~g 238 (398)
T PRK13656 170 DTDKDVIIEVTVEPATEEEIADTVKVMGGEDWELWIDALDEAGVLAEG--------AKTVAYSYIGPELT---HPIYWDG 238 (398)
T ss_pred cccccceeEEEEeeCCHHHHHHHHHhhccchHHHHHHHHHhcccccCC--------cEEEEEecCCccee---ecccCCc
Confidence 112333444444333222 1133345555555432 38999999887766 3444 4
Q ss_pred cchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCC--------CCCCChHHHHHHHHHHHhhc
Q 023441 194 SYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE--------GKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 194 ~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~~ 264 (282)
..+.+|++|+.-++.|+.++++. ++|+|++.+|++.|......+.-... ...-.-|.|.+++..++...
T Consensus 239 ~mG~AKa~LE~~~r~La~~L~~~--giran~i~~g~~~T~Ass~Ip~~~ly~~~l~kvmk~~g~he~~ieq~~rl~~~~ 315 (398)
T PRK13656 239 TIGKAKKDLDRTALALNEKLAAK--GGDAYVSVLKAVVTQASSAIPVMPLYISLLFKVMKEKGTHEGCIEQIYRLFSER 315 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhc--CCEEEEEecCcccchhhhcCCCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Confidence 77999999999999999999998 89999999999999866543221111 11124566778888777644
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.1e-20 Score=168.68 Aligned_cols=201 Identities=12% Similarity=0.130 Sum_probs=148.4
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc---------CCCceeEEEeeCCChhHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR---------FPERLDVLQLDLTVESTIEA 96 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~---------~~~~v~~~~~Dls~~~~~~~ 96 (282)
.+||++|||||+|+||++++++|+++|++ |++++|+.++++.+.+.+.+ ...++.++.+|++|.+++.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~--Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFR--VRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 46899999999999999999999999988 99999998876544332211 12368999999999988765
Q ss_pred HHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEE
Q 023441 97 SAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVAN 176 (282)
Q Consensus 97 ~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~ 176 (282)
+ ++++|+||||+|... . . ..++...+.+|+.+..++++++... +. ++||+
T Consensus 156 a-------LggiDiVVn~AG~~~-------~-~-----v~d~~~~~~VN~~Gt~nLl~Aa~~a----gV------gRIV~ 205 (576)
T PLN03209 156 A-------LGNASVVICCIGASE-------K-E-----VFDVTGPYRIDYLATKNLVDAATVA----KV------NHFIL 205 (576)
T ss_pred H-------hcCCCEEEEcccccc-------c-c-----ccchhhHHHHHHHHHHHHHHHHHHh----CC------CEEEE
Confidence 3 357999999999753 1 1 1235677889999999999987643 22 28999
Q ss_pred eeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-----c---ccCCCCCCCC
Q 023441 177 LSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-----F---QRNVPEGKLF 248 (282)
Q Consensus 177 ~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~-----~---~~~~~~~~~~ 248 (282)
+||.++.... .+. ..|. +|+++..+.+.+..++... +|++++|+||++.|++... + .......+..
T Consensus 206 VSSiga~~~g--~p~-~~~~-sk~~~~~~KraaE~~L~~s--GIrvTIVRPG~L~tp~d~~~~t~~v~~~~~d~~~gr~i 279 (576)
T PLN03209 206 VTSLGTNKVG--FPA-AILN-LFWGVLCWKRKAEEALIAS--GLPYTIVRPGGMERPTDAYKETHNLTLSEEDTLFGGQV 279 (576)
T ss_pred EccchhcccC--ccc-cchh-hHHHHHHHHHHHHHHHHHc--CCCEEEEECCeecCCccccccccceeeccccccCCCcc
Confidence 9998763211 111 1244 7888888888888888887 8999999999998875331 1 1112334557
Q ss_pred ChHHHHHHHHHHHhhc
Q 023441 249 TKEFSVQKLLNIINNI 264 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~ 264 (282)
+.+++|+.+++++++.
T Consensus 280 sreDVA~vVvfLasd~ 295 (576)
T PLN03209 280 SNLQVAELMACMAKNR 295 (576)
T ss_pred CHHHHHHHHHHHHcCc
Confidence 8999999999999743
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-19 Score=156.48 Aligned_cols=210 Identities=16% Similarity=0.205 Sum_probs=150.5
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++||++|||||+|+||.+++++|+++|++ |++++|+..........+. .+.++.++.+|++|.+++.+++++.
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~--V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~---- 74 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAE--VYGYSLDPPTSPNLFELLN-LAKKIEDHFGDIRDAAKLRKAIAEF---- 74 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCE--EEEEeCCCccchhHHHHHh-hcCCceEEEccCCCHHHHHHHHhhc----
Confidence 57899999999999999999999999988 8888988765433322221 1346788999999999999888864
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc-
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI- 184 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~- 184 (282)
++|++||+|+... . ..+.+++...+++|+.+++++++.+.+. +.. +++|++||.....
T Consensus 75 -~~d~vih~A~~~~-------~----~~~~~~~~~~~~~N~~g~~~ll~a~~~~---~~~------~~iv~~SS~~vyg~ 133 (349)
T TIGR02622 75 -KPEIVFHLAAQPL-------V----RKSYADPLETFETNVMGTVNLLEAIRAI---GSV------KAVVNVTSDKCYRN 133 (349)
T ss_pred -CCCEEEECCcccc-------c----ccchhCHHHHHHHhHHHHHHHHHHHHhc---CCC------CEEEEEechhhhCC
Confidence 6899999999642 1 1223456678899999999999987532 111 2888988853221
Q ss_pred --------CCCCCCCcccchhhHHHHHHHHHHHHHHhccCC--CCeEEEEEecccccCCCCc---c--------ccc---
Q 023441 185 --------GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKK--DPVICILLHPGTVDTDLSR---P--------FQR--- 240 (282)
Q Consensus 185 --------~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~--~~i~v~~i~Pg~v~t~~~~---~--------~~~--- 240 (282)
...+..+...|+.+|.+.+.+++.++.++.+.. .+++++++.|+.+..+-.. . ...
T Consensus 134 ~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~ 213 (349)
T TIGR02622 134 DEWVWGYRETDPLGGHDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKI 213 (349)
T ss_pred CCCCCCCccCCCCCCCCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCC
Confidence 111234567899999999999999998875421 2799999999998765310 0 000
Q ss_pred -----CCCCCCCCChHHHHHHHHHHHhh
Q 023441 241 -----NVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 241 -----~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
......+...+|++.+++.++..
T Consensus 214 ~~~~~g~~~rd~i~v~D~a~a~~~~~~~ 241 (349)
T TIGR02622 214 VIIRNPDATRPWQHVLEPLSGYLLLAEK 241 (349)
T ss_pred eEECCCCcccceeeHHHHHHHHHHHHHH
Confidence 11123446788999998887764
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-19 Score=155.29 Aligned_cols=217 Identities=19% Similarity=0.195 Sum_probs=152.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc--cCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN--RFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~--~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+||++|||||+|+||++++++|+++|++ |++++|+....+....... ....++.++.+|++|.++++++++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~----- 76 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYT--INATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID----- 76 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCE--EEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc-----
Confidence 4799999999999999999999999987 8888888765433222111 112478999999999998888775
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++|++|||||... . ..+.+.+...+++|+.+++++++++.+.+. . ++||++||..+..
T Consensus 77 --~~d~vih~A~~~~-------~----~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~---~------~~iv~~SS~~~~~ 134 (325)
T PLN02989 77 --GCETVFHTASPVA-------I----TVKTDPQVELINPAVNGTINVLRTCTKVSS---V------KRVILTSSMAAVL 134 (325)
T ss_pred --CCCEEEEeCCCCC-------C----CCCCChHHHHHHHHHHHHHHHHHHHHHcCC---c------eEEEEecchhhee
Confidence 5899999999642 1 112345678899999999999999877532 1 3899999976543
Q ss_pred CCC-----------CCC--------CcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------
Q 023441 185 GDN-----------RLG--------GWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF------- 238 (282)
Q Consensus 185 ~~~-----------~~~--------~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~------- 238 (282)
+.. ..+ ....|+.+|.+.+.+++.++++. ++.++.+.|+.+..+.....
T Consensus 135 ~~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilR~~~vyGp~~~~~~~~~~~~ 209 (325)
T PLN02989 135 APETKLGPNDVVDETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKDN-----EIDLIVLNPGLVTGPILQPTLNFSVAV 209 (325)
T ss_pred cCCccCCCCCccCcCCCCchhHhcccccchHHHHHHHHHHHHHHHHHc-----CCeEEEEcCCceeCCCCCCCCCchHHH
Confidence 210 001 12469999999999998887765 67888889999977654321
Q ss_pred -----ccCCCC----CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 239 -----QRNVPE----GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 239 -----~~~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
....+. ..+...+++|++++.++.... ..| .|.+.++.+
T Consensus 210 i~~~~~~~~~~~~~~r~~i~v~Dva~a~~~~l~~~~--~~~-~~ni~~~~~ 257 (325)
T PLN02989 210 IVELMKGKNPFNTTHHRFVDVRDVALAHVKALETPS--ANG-RYIIDGPVV 257 (325)
T ss_pred HHHHHcCCCCCCCcCcCeeEHHHHHHHHHHHhcCcc--cCc-eEEEecCCC
Confidence 011111 234568999999998886532 234 345555543
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=144.17 Aligned_cols=150 Identities=15% Similarity=0.235 Sum_probs=114.4
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.|+++||+++||||++|||.+++++|+++|++ |++.+|+.+..+...+.+...+.++.++++|+++.++++++++++.
T Consensus 11 ~~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~--V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~ 88 (169)
T PRK06720 11 KMKLAGKVAIVTGGGIGIGRNTALLLAKQGAK--VIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITL 88 (169)
T ss_pred ccccCCCEEEEecCCChHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 46689999999999999999999999999987 9999998776655444444445678889999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCC-ccceeEEEEeeccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGI-ERDVAVVANLSARV 181 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~-~~~~~~iv~~ss~~ 181 (282)
+.+|++|++|||||.... .....+.+.+. .+ .+|+.+.+...+.+.+.+.+++... ....+++..+|+.+
T Consensus 89 ~~~G~iDilVnnAG~~~~------~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (169)
T PRK06720 89 NAFSRIDMLFQNAGLYKI------DSIFSRQQEND-SN--VLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKG 159 (169)
T ss_pred HHcCCCCEEEECCCcCCC------CCcccccchhH-hh--ceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEecccc
Confidence 999999999999998751 22233323333 33 6777788899999998887765432 22344677777765
Q ss_pred cc
Q 023441 182 GS 183 (282)
Q Consensus 182 ~~ 183 (282)
..
T Consensus 160 ~~ 161 (169)
T PRK06720 160 QS 161 (169)
T ss_pred cc
Confidence 43
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-18 Score=149.54 Aligned_cols=217 Identities=19% Similarity=0.143 Sum_probs=151.5
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc--cCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN--RFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~--~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
-.||+++||||+|.||.+++++|+++|++ |++..|+....+....... ....++.++.+|++|.+++.++++
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYT--VKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIE---- 76 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHh----
Confidence 46899999999999999999999999987 8888888766543322221 113478999999999998888776
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.+|++||+|+... .. . .+...+.+++|+.++.++++.+.... + .++||++||....
T Consensus 77 ---~~d~vih~A~~~~-------~~-~----~~~~~~~~~~nv~gt~~ll~~~~~~~---~------v~rvV~~SS~~~~ 132 (322)
T PLN02986 77 ---GCDAVFHTASPVF-------FT-V----KDPQTELIDPALKGTINVLNTCKETP---S------VKRVILTSSTAAV 132 (322)
T ss_pred ---CCCEEEEeCCCcC-------CC-C----CCchhhhhHHHHHHHHHHHHHHHhcC---C------ccEEEEecchhhe
Confidence 4899999999642 11 0 11234578999999999999875421 1 1389999997643
Q ss_pred c-CCCC-------------C-----CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc------
Q 023441 184 I-GDNR-------------L-----GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF------ 238 (282)
Q Consensus 184 ~-~~~~-------------~-----~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~------ 238 (282)
. +..+ . .....|+.||.+.+.+++.+.++. ++.+++++|+.+..+.....
T Consensus 133 ~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y~~sK~~aE~~~~~~~~~~-----~~~~~~lrp~~v~Gp~~~~~~~~~~~ 207 (322)
T PLN02986 133 LFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEFAKDN-----GIDMVVLNPGFICGPLLQPTLNFSVE 207 (322)
T ss_pred ecCCccCCCCCCcCcccCCChHHhhccccchHHHHHHHHHHHHHHHHHh-----CCeEEEEcccceeCCCCCCCCCccHH
Confidence 1 1100 0 123569999999998888877664 68889999999988753321
Q ss_pred -----ccCCC-----CCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 239 -----QRNVP-----EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 239 -----~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
....+ ...+...+++|++++.++.... ..| .+.+.++.+
T Consensus 208 ~~~~~~~g~~~~~~~~~~~v~v~Dva~a~~~al~~~~--~~~-~yni~~~~~ 256 (322)
T PLN02986 208 LIVDFINGKNLFNNRFYRFVDVRDVALAHIKALETPS--ANG-RYIIDGPIM 256 (322)
T ss_pred HHHHHHcCCCCCCCcCcceeEHHHHHHHHHHHhcCcc--cCC-cEEEecCCC
Confidence 00111 1245689999999999887542 234 455555544
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.4e-18 Score=149.42 Aligned_cols=216 Identities=14% Similarity=0.068 Sum_probs=145.1
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc--cccccc---cccCCCceeEEEeeCCChhHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA--TGLLDL---KNRFPERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~--~~~~~~---~~~~~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
+++||++|||||+|+||.+++++|+++|++ |++++|+.... ..+... ....+.++.++.+|++|.+++.++++
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 80 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYE--VHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLD 80 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCE--EEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHH
Confidence 678999999999999999999999999988 88888876432 111111 11123468999999999999999888
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
.. ++|+|||+|+... .. ...+.....+++|+.++.++++.+.+...+++. ..++|++||
T Consensus 81 ~~-----~~d~Vih~A~~~~-------~~----~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~-----~~~~v~~Ss 139 (340)
T PLN02653 81 DI-----KPDEVYNLAAQSH-------VA----VSFEMPDYTADVVATGALRLLEAVRLHGQETGR-----QIKYYQAGS 139 (340)
T ss_pred Hc-----CCCEEEECCcccc-------hh----hhhhChhHHHHHHHHHHHHHHHHHHHhcccccc-----ceeEEEecc
Confidence 64 5899999999753 11 111234566789999999999999887654321 136777766
Q ss_pred c--ccccC-----CCCCCCcccchhhHHHHHHHHHHHHHHhccC-CCCeEEEEEecccccCCCC-----------ccc--
Q 023441 180 R--VGSIG-----DNRLGGWHSYRASKAALNQLTKSVSVEFGRK-KDPVICILLHPGTVDTDLS-----------RPF-- 238 (282)
Q Consensus 180 ~--~~~~~-----~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~-~~~i~v~~i~Pg~v~t~~~-----------~~~-- 238 (282)
. +|... +.+......|+.||.+.+.+++.++.+++.. ...+.++.+.|+...+-+. +..
T Consensus 140 ~~vyg~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~ 219 (340)
T PLN02653 140 SEMYGSTPPPQSETTPFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQK 219 (340)
T ss_pred HHHhCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCC
Confidence 4 33211 1122345679999999999999998876421 0134445555654322110 000
Q ss_pred ----ccCCCCCCCCChHHHHHHHHHHHhh
Q 023441 239 ----QRNVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 239 ----~~~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
........+...++++++++.++..
T Consensus 220 ~~~~g~g~~~rd~i~v~D~a~a~~~~~~~ 248 (340)
T PLN02653 220 KLFLGNLDASRDWGFAGDYVEAMWLMLQQ 248 (340)
T ss_pred ceEeCCCcceecceeHHHHHHHHHHHHhc
Confidence 0011123556899999999998875
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=148.75 Aligned_cols=203 Identities=17% Similarity=0.123 Sum_probs=144.8
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc--cCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN--RFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~--~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+.|++|||||+|.||.+++++|+++|++ |++.+|+............ ....++.++.+|++|.+.+.++++
T Consensus 3 ~~~k~iLVTGatGfIGs~l~~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~---- 76 (351)
T PLN02650 3 SQKETVCVTGASGFIGSWLVMRLLERGYT--VRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIR---- 76 (351)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHCCCE--EEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHh----
Confidence 35689999999999999999999999988 8888888765543322221 112368899999999988887765
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.+|++||+|+... .. . .+.....+++|+.++.++++++.+... . .++|++||....
T Consensus 77 ---~~d~ViH~A~~~~-------~~---~--~~~~~~~~~~Nv~gt~~ll~aa~~~~~---~------~r~v~~SS~~~~ 132 (351)
T PLN02650 77 ---GCTGVFHVATPMD-------FE---S--KDPENEVIKPTVNGMLSIMKACAKAKT---V------RRIVFTSSAGTV 132 (351)
T ss_pred ---CCCEEEEeCCCCC-------CC---C--CCchhhhhhHHHHHHHHHHHHHHhcCC---c------eEEEEecchhhc
Confidence 4899999998642 11 0 112346689999999999999876431 0 278999887432
Q ss_pred cCC--------CC-----------CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc------
Q 023441 184 IGD--------NR-----------LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF------ 238 (282)
Q Consensus 184 ~~~--------~~-----------~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~------ 238 (282)
.+. +. ......|+.||.+.+.+++.++.++ +++++.+.|+.+..+.....
T Consensus 133 ~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~Gp~~~~~~~~~~~ 207 (351)
T PLN02650 133 NVEEHQKPVYDEDCWSDLDFCRRKKMTGWMYFVSKTLAEKAAWKYAAEN-----GLDFISIIPTLVVGPFISTSMPPSLI 207 (351)
T ss_pred ccCCCCCCccCcccCCchhhhhccccccchHHHHHHHHHHHHHHHHHHc-----CCeEEEECCCceECCCCCCCCCccHH
Confidence 210 00 0012379999999999999888774 78899999999888753210
Q ss_pred ------ccC------CCCCCCCChHHHHHHHHHHHhh
Q 023441 239 ------QRN------VPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 239 ------~~~------~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
... .....+...+|++++++.++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~r~~v~V~Dva~a~~~~l~~ 244 (351)
T PLN02650 208 TALSLITGNEAHYSIIKQGQFVHLDDLCNAHIFLFEH 244 (351)
T ss_pred HHHHHhcCCccccCcCCCcceeeHHHHHHHHHHHhcC
Confidence 000 0113567899999999998875
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-17 Score=150.96 Aligned_cols=183 Identities=14% Similarity=0.049 Sum_probs=129.2
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc-------ccc------ccc----cccCCCceeEEE
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA-------TGL------LDL----KNRFPERLDVLQ 85 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~-------~~~------~~~----~~~~~~~v~~~~ 85 (282)
+.++++|++|||||+|+||++++++|+++|++ |++++|..... ... .+. ....+.++.++.
T Consensus 42 ~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~--V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~ 119 (442)
T PLN02572 42 SSSSKKKKVMVIGGDGYCGWATALHLSKRGYE--VAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYV 119 (442)
T ss_pred CccccCCEEEEECCCcHHHHHHHHHHHHCCCe--EEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEE
Confidence 35678999999999999999999999999988 88876432111 000 000 011123689999
Q ss_pred eeCCChhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCC
Q 023441 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGT 165 (282)
Q Consensus 86 ~Dls~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~ 165 (282)
+|++|.+++.++++.. ++|+|||+|+... ......+++.+...+++|+.+++++++++...-.+
T Consensus 120 ~Dl~d~~~v~~~l~~~-----~~D~ViHlAa~~~--------~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~--- 183 (442)
T PLN02572 120 GDICDFEFLSEAFKSF-----EPDAVVHFGEQRS--------APYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPD--- 183 (442)
T ss_pred CCCCCHHHHHHHHHhC-----CCCEEEECCCccc--------ChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCC---
Confidence 9999999999888863 6999999997642 22223344556777899999999999988764211
Q ss_pred CCccceeEEEEeeccccccCC---------------------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEE
Q 023441 166 GIERDVAVVANLSARVGSIGD---------------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICIL 224 (282)
Q Consensus 166 g~~~~~~~iv~~ss~~~~~~~---------------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~ 224 (282)
.++|++||....-.. .+......|+.+|.+.+.+.+.++..+ ++.+.+
T Consensus 184 ------~~~V~~SS~~vYG~~~~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~-----gl~~v~ 252 (442)
T PLN02572 184 ------CHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-----GIRATD 252 (442)
T ss_pred ------ccEEEEecceecCCCCCCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhc-----CCCEEE
Confidence 268888876432100 012234579999999999998877765 688888
Q ss_pred EecccccCCC
Q 023441 225 LHPGTVDTDL 234 (282)
Q Consensus 225 i~Pg~v~t~~ 234 (282)
+.|+.+..+.
T Consensus 253 lR~~~vyGp~ 262 (442)
T PLN02572 253 LNQGVVYGVR 262 (442)
T ss_pred EecccccCCC
Confidence 8898886653
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.2e-17 Score=144.20 Aligned_cols=212 Identities=17% Similarity=0.130 Sum_probs=145.8
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
...+-+++++|||||+|.||.+++++|+++|++ |++++|+.+........+.. +.++.++.+|++|.+++.+++.
T Consensus 4 ~~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~-- 78 (353)
T PLN02896 4 EGRESATGTYCVTGATGYIGSWLVKLLLQRGYT--VHATLRDPAKSLHLLSKWKE-GDRLRLFRADLQEEGSFDEAVK-- 78 (353)
T ss_pred cccccCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCChHHHHHHHHhhcc-CCeEEEEECCCCCHHHHHHHHc--
Confidence 345567889999999999999999999999987 88888886554433322222 3578999999999998887764
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhh--hhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL--MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~--~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++|++||+|+.... .......+++.+ ...+++|+.++.++++++.+... . .++|++||
T Consensus 79 -----~~d~Vih~A~~~~~------~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~---~------~~~v~~SS 138 (353)
T PLN02896 79 -----GCDGVFHVAASMEF------DVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKT---V------KRVVFTSS 138 (353)
T ss_pred -----CCCEEEECCccccC------CccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCC---c------cEEEEEec
Confidence 58999999997641 100111122222 34667788999999998876421 1 27888888
Q ss_pred cccccCC-----------C----C-------CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc
Q 023441 180 RVGSIGD-----------N----R-------LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP 237 (282)
Q Consensus 180 ~~~~~~~-----------~----~-------~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~ 237 (282)
....... + + .+....|+.||.+.+.+++.+++++ ++.+.++.|+.+..+....
T Consensus 139 ~~vyg~~~~~~~~~~~~~E~~~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~~lR~~~vyGp~~~~ 213 (353)
T PLN02896 139 ISTLTAKDSNGRWRAVVDETCQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKEN-----GIDLVSVITTTVAGPFLTP 213 (353)
T ss_pred hhhccccccCCCCCCccCcccCCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHc-----CCeEEEEcCCcccCCCcCC
Confidence 6443210 0 0 0122379999999999998887765 6889999998887764321
Q ss_pred c------------ccCCC-------------CCCCCChHHHHHHHHHHHhh
Q 023441 238 F------------QRNVP-------------EGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 238 ~------------~~~~~-------------~~~~~~~~~~a~~~~~~~~~ 263 (282)
. ..... ...+...++++++++.++..
T Consensus 214 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dfi~v~Dva~a~~~~l~~ 264 (353)
T PLN02896 214 SVPSSIQVLLSPITGDSKLFSILSAVNSRMGSIALVHIEDICDAHIFLMEQ 264 (353)
T ss_pred CCCchHHHHHHHhcCCccccccccccccccCceeEEeHHHHHHHHHHHHhC
Confidence 0 00000 01356889999999998864
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.6e-17 Score=143.58 Aligned_cols=205 Identities=15% Similarity=0.067 Sum_probs=142.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccc--ccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD--LKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~--~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
-+++++++|||||+|.||++++++|+++|++ |++++|+......... .+... .++.++.+|++|.+++.+++.
T Consensus 5 ~~~~~~~vlItG~~GfIG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~-- 79 (338)
T PLN00198 5 TPTGKKTACVIGGTGFLASLLIKLLLQKGYA--VNTTVRDPENQKKIAHLRALQEL-GDLKIFGADLTDEESFEAPIA-- 79 (338)
T ss_pred cCCCCCeEEEECCchHHHHHHHHHHHHCCCE--EEEEECCCCCHHHHHHHHhcCCC-CceEEEEcCCCChHHHHHHHh--
Confidence 3455899999999999999999999999987 8888887654322111 11111 368899999999988877664
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
++|++||+|+... .. ..+.....+++|+.++.++++++.+.. +. .++|++||..
T Consensus 80 -----~~d~vih~A~~~~-------~~-----~~~~~~~~~~~nv~g~~~ll~a~~~~~---~~------~~~v~~SS~~ 133 (338)
T PLN00198 80 -----GCDLVFHVATPVN-------FA-----SEDPENDMIKPAIQGVHNVLKACAKAK---SV------KRVILTSSAA 133 (338)
T ss_pred -----cCCEEEEeCCCCc-------cC-----CCChHHHHHHHHHHHHHHHHHHHHhcC---Cc------cEEEEeecce
Confidence 5899999998532 11 012234567899999999999986632 11 2888898865
Q ss_pred cccCC---------------------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--
Q 023441 182 GSIGD---------------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-- 238 (282)
Q Consensus 182 ~~~~~---------------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-- 238 (282)
..... .+.+....|+.||.+.+.+++.++.++ ++.++.+.|+.+..+.....
T Consensus 134 ~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~~~R~~~vyGp~~~~~~~ 208 (338)
T PLN00198 134 AVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWKFAEEN-----NIDLITVIPTLMAGPSLTSDIP 208 (338)
T ss_pred eeeccCCCCCCceeccccCCchhhhhhcCCccchhHHHHHHHHHHHHHHHHhc-----CceEEEEeCCceECCCccCCCC
Confidence 33210 011234569999999999999887764 67888889998877642110
Q ss_pred ----------cc-C--------CC----CCCCCChHHHHHHHHHHHhhc
Q 023441 239 ----------QR-N--------VP----EGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 239 ----------~~-~--------~~----~~~~~~~~~~a~~~~~~~~~~ 264 (282)
.. . .. ...+...++++++++.++...
T Consensus 209 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~D~a~a~~~~~~~~ 257 (338)
T PLN00198 209 SSLSLAMSLITGNEFLINGLKGMQMLSGSISITHVEDVCRAHIFLAEKE 257 (338)
T ss_pred CcHHHHHHHHcCCccccccccccccccCCcceeEHHHHHHHHHHHhhCc
Confidence 00 0 00 124578999999998888753
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-17 Score=140.51 Aligned_cols=212 Identities=14% Similarity=0.061 Sum_probs=145.0
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc--ccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT--GLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~--~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
=.+|++|||||+|+||++++++|+++|++ |+++.|+....+ .........+.++.++.+|++|.+++.+++.
T Consensus 4 ~~~k~vlVTGatG~IG~~lv~~Ll~~G~~--V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~---- 77 (297)
T PLN02583 4 ESSKSVCVMDASGYVGFWLVKRLLSRGYT--VHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALK---- 77 (297)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCE--EEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHc----
Confidence 35789999999999999999999999987 888888643321 1111111123478899999999988876654
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
..|+++|.++... .. ...++..+++|+.+++++++++.+.+. . ++||++||..+.
T Consensus 78 ---~~d~v~~~~~~~~-------~~------~~~~~~~~~~nv~gt~~ll~aa~~~~~---v------~riV~~SS~~a~ 132 (297)
T PLN02583 78 ---GCSGLFCCFDPPS-------DY------PSYDEKMVDVEVRAAHNVLEACAQTDT---I------EKVVFTSSLTAV 132 (297)
T ss_pred ---CCCEEEEeCccCC-------cc------cccHHHHHHHHHHHHHHHHHHHHhcCC---c------cEEEEecchHhe
Confidence 5789988765431 11 123567899999999999999877531 1 289999997654
Q ss_pred cCC-C------CCC--C----------cccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----cc
Q 023441 184 IGD-N------RLG--G----------WHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----QR 240 (282)
Q Consensus 184 ~~~-~------~~~--~----------~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----~~ 240 (282)
... . +.. . ...|+.||...+.++..++++. ++.+++++|+.+..+..... ..
T Consensus 133 ~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~~-----gi~~v~lrp~~v~Gp~~~~~~~~~~~ 207 (297)
T PLN02583 133 IWRDDNISTQKDVDERSWSDQNFCRKFKLWHALAKTLSEKTAWALAMDR-----GVNMVSINAGLLMGPSLTQHNPYLKG 207 (297)
T ss_pred ecccccCCCCCCCCcccCCCHHHHhhcccHHHHHHHHHHHHHHHHHHHh-----CCcEEEEcCCcccCCCCCCchhhhcC
Confidence 211 0 000 0 0158899998888887776553 78999999999988754321 11
Q ss_pred CCC-----CCCCCChHHHHHHHHHHHhhcCCCCCCceeec
Q 023441 241 NVP-----EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 241 ~~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~ 275 (282)
..+ ...+.+.+++|++.+..++.. ...|.++-.
T Consensus 208 ~~~~~~~~~~~~v~V~Dva~a~~~al~~~--~~~~r~~~~ 245 (297)
T PLN02583 208 AAQMYENGVLVTVDVNFLVDAHIRAFEDV--SSYGRYLCF 245 (297)
T ss_pred CcccCcccCcceEEHHHHHHHHHHHhcCc--ccCCcEEEe
Confidence 101 123567899999999999743 344555443
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-17 Score=143.33 Aligned_cols=199 Identities=19% Similarity=0.076 Sum_probs=142.5
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc-ccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL-LDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~-~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.++|+++||||+|.||.+++++|+++|++ |++++|+.+..... ...+.....++.++.+|++|.+++.++++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----- 80 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYT--VKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID----- 80 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCE--EEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh-----
Confidence 56899999999999999999999999987 88888986643211 11111122468899999999998887775
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++|++||+|+... +...+.+++|+.++.++++++...- - .++|++||..+..
T Consensus 81 --~~d~Vih~A~~~~----------------~~~~~~~~~nv~gt~~ll~aa~~~~----v------~r~V~~SS~~avy 132 (342)
T PLN02214 81 --GCDGVFHTASPVT----------------DDPEQMVEPAVNGAKFVINAAAEAK----V------KRVVITSSIGAVY 132 (342)
T ss_pred --cCCEEEEecCCCC----------------CCHHHHHHHHHHHHHHHHHHHHhcC----C------CEEEEeccceeee
Confidence 5899999998642 1245678999999999999986531 1 2788998864332
Q ss_pred CCC------------------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------
Q 023441 185 GDN------------------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------- 238 (282)
Q Consensus 185 ~~~------------------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------- 238 (282)
+.. +......|+.+|.+.+.+++.++.+. ++.+..+.|+.+..+.....
T Consensus 133 g~~~~~~~~~~~E~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~-----g~~~v~lRp~~vyGp~~~~~~~~~~~~~ 207 (342)
T PLN02214 133 MDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEK-----GVDLVVLNPVLVLGPPLQPTINASLYHV 207 (342)
T ss_pred ccCCCCCCcccCcccCCChhhccccccHHHHHHHHHHHHHHHHHHHc-----CCcEEEEeCCceECCCCCCCCCchHHHH
Confidence 210 00123469999999999998887765 67888889998876643210
Q ss_pred ----ccCCC-----CCCCCChHHHHHHHHHHHhhc
Q 023441 239 ----QRNVP-----EGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 239 ----~~~~~-----~~~~~~~~~~a~~~~~~~~~~ 264 (282)
..... ...+...+|+|++++.++...
T Consensus 208 ~~~~~g~~~~~~~~~~~~i~V~Dva~a~~~al~~~ 242 (342)
T PLN02214 208 LKYLTGSAKTYANLTQAYVDVRDVALAHVLVYEAP 242 (342)
T ss_pred HHHHcCCcccCCCCCcCeeEHHHHHHHHHHHHhCc
Confidence 01111 124567999999999888753
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-16 Score=140.82 Aligned_cols=220 Identities=11% Similarity=0.112 Sum_probs=144.2
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc-cCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN-RFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~-~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
|++|||||+|+||.+++++|.++|+. .+++.+|.... ........ ....++.++.+|++|.++++++++. .+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 74 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSD-AVVVVDKLTYA-GNLMSLAPVAQSERFAFEKVDICDRAELARVFTE-----HQ 74 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCC-EEEEEecCccc-cchhhhhhcccCCceEEEECCCcChHHHHHHHhh-----cC
Confidence 58999999999999999999999987 23344544321 11111111 0123688899999999999888875 26
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc--cccC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV--GSIG 185 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~--~~~~ 185 (282)
+|+|||+||... . ..+.+.+...+++|+.++.++++++.+.+..-.. ......++|++||.. +...
T Consensus 75 ~D~Vih~A~~~~-------~----~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~-~~~~~~~~i~~SS~~vyg~~~ 142 (355)
T PRK10217 75 PDCVMHLAAESH-------V----DRSIDGPAAFIETNIVGTYTLLEAARAYWNALTE-DKKSAFRFHHISTDEVYGDLH 142 (355)
T ss_pred CCEEEECCcccC-------c----chhhhChHHHHHHhhHHHHHHHHHHHHhhhcccc-cccCceEEEEecchhhcCCCC
Confidence 999999999753 1 1123456788999999999999999875321100 000113788888843 3110
Q ss_pred --------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc----------c-cccC-----
Q 023441 186 --------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR----------P-FQRN----- 241 (282)
Q Consensus 186 --------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~----------~-~~~~----- 241 (282)
..+..+...|+.||.+.+.+++.+++++ ++.+..+.|+.+..+-.. . ....
T Consensus 143 ~~~~~~~E~~~~~p~s~Y~~sK~~~e~~~~~~~~~~-----~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~ 217 (355)
T PRK10217 143 STDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY-----GLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVY 217 (355)
T ss_pred CCCCCcCCCCCCCCCChhHHHHHHHHHHHHHHHHHh-----CCCeEEEeeeeeeCCCCCcccHHHHHHHHHhcCCCceEe
Confidence 1123456789999999999999998876 455666677766544321 0 0000
Q ss_pred ---CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeec
Q 023441 242 ---VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 242 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~ 275 (282)
.....+...++++.+++.++... ..|..|.+
T Consensus 218 g~g~~~~~~i~v~D~a~a~~~~~~~~---~~~~~yni 251 (355)
T PRK10217 218 GNGQQIRDWLYVEDHARALYCVATTG---KVGETYNI 251 (355)
T ss_pred CCCCeeeCcCcHHHHHHHHHHHHhcC---CCCCeEEe
Confidence 11235678999999998888642 24555654
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=140.56 Aligned_cols=203 Identities=17% Similarity=0.155 Sum_probs=141.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccc--ccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK--NRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~--~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+||++|||||+|.||++++++|+++|++ |++++|+.........+. .....++.++.+|++|.+++.++++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 75 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYT--VKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD----- 75 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCE--EEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc-----
Confidence 5789999999999999999999999987 888888765433222111 1112478999999999988877765
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc-
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS- 183 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~- 183 (282)
++|++||+|+... .. . .+.....+++|+.++.++++++..... . .++|++||..+.
T Consensus 76 --~~d~Vih~A~~~~-------~~-~----~~~~~~~~~~nv~gt~~ll~a~~~~~~---~------~~~v~~SS~~~~~ 132 (322)
T PLN02662 76 --GCEGVFHTASPFY-------HD-V----TDPQAELIDPAVKGTLNVLRSCAKVPS---V------KRVVVTSSMAAVA 132 (322)
T ss_pred --CCCEEEEeCCccc-------CC-C----CChHHHHHHHHHHHHHHHHHHHHhCCC---C------CEEEEccCHHHhc
Confidence 5899999998642 10 0 011246789999999999998765321 1 278899986531
Q ss_pred cCCCC-------------CC-----CcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc------
Q 023441 184 IGDNR-------------LG-----GWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ------ 239 (282)
Q Consensus 184 ~~~~~-------------~~-----~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~------ 239 (282)
.+..+ .+ ....|+.+|...+.+++.+..+. +++++.+.|+.+..+......
T Consensus 133 y~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~~lRp~~v~Gp~~~~~~~~~~~~ 207 (322)
T PLN02662 133 YNGKPLTPDVVVDETWFSDPAFCEESKLWYVLSKTLAEEAAWKFAKEN-----GIDMVTINPAMVIGPLLQPTLNTSAEA 207 (322)
T ss_pred CCCcCCCCCCcCCcccCCChhHhhcccchHHHHHHHHHHHHHHHHHHc-----CCcEEEEeCCcccCCCCCCCCCchHHH
Confidence 11100 01 11469999999998888776654 688888899999887543210
Q ss_pred --------cCCC--CCCCCChHHHHHHHHHHHhhc
Q 023441 240 --------RNVP--EGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 240 --------~~~~--~~~~~~~~~~a~~~~~~~~~~ 264 (282)
...+ ...+...+|+|++++.++...
T Consensus 208 ~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 242 (322)
T PLN02662 208 ILNLINGAQTFPNASYRWVDVRDVANAHIQAFEIP 242 (322)
T ss_pred HHHHhcCCccCCCCCcCeEEHHHHHHHHHHHhcCc
Confidence 0001 124578899999999988753
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=145.09 Aligned_cols=217 Identities=18% Similarity=0.147 Sum_probs=167.6
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc-CC-CceeEEEeeCCChhHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR-FP-ERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~-~~-~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++||++|||||+|.||.++|+++++.+.+ .+++.+|++.++-.+..++++ ++ .++.++-+|+.|.+.++++++..
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~-~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~- 324 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNPK-EIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH- 324 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCCC-EEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC-
Confidence 468999999999999999999999999987 799999999888765544443 33 58999999999999999998864
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++|+++|.|+.-. -|.-+. ...+.+.+|+.|+.++++++..+-.+ .+|.+|+.-+
T Consensus 325 ----kvd~VfHAAA~KH--------VPl~E~---nP~Eai~tNV~GT~nv~~aa~~~~V~----------~~V~iSTDKA 379 (588)
T COG1086 325 ----KVDIVFHAAALKH--------VPLVEY---NPEEAIKTNVLGTENVAEAAIKNGVK----------KFVLISTDKA 379 (588)
T ss_pred ----CCceEEEhhhhcc--------Ccchhc---CHHHHHHHhhHhHHHHHHHHHHhCCC----------EEEEEecCcc
Confidence 7999999999863 333333 34577999999999999999876554 8999999877
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCC------c-ccccCCC--------CCCC
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS------R-PFQRNVP--------EGKL 247 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~------~-~~~~~~~--------~~~~ 247 (282)
..+ -..|+++|...+.++++++++.... +-++.++.=|.|-...- + +.....| ...+
T Consensus 380 V~P------tNvmGaTKr~aE~~~~a~~~~~~~~--~T~f~~VRFGNVlGSrGSViPlFk~QI~~GgplTvTdp~mtRyf 451 (588)
T COG1086 380 VNP------TNVMGATKRLAEKLFQAANRNVSGT--GTRFCVVRFGNVLGSRGSVIPLFKKQIAEGGPLTVTDPDMTRFF 451 (588)
T ss_pred cCC------chHhhHHHHHHHHHHHHHhhccCCC--CcEEEEEEecceecCCCCCHHHHHHHHHcCCCccccCCCceeEE
Confidence 644 2479999999999999999977654 57888888888754421 1 1111111 1345
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 248 FTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++.+|.++.++.... ...+|..|..|-|+
T Consensus 452 MTI~EAv~LVlqA~a---~~~gGeifvldMGe 480 (588)
T COG1086 452 MTIPEAVQLVLQAGA---IAKGGEIFVLDMGE 480 (588)
T ss_pred EEHHHHHHHHHHHHh---hcCCCcEEEEcCCC
Confidence 677888887666554 46689999888754
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-16 Score=139.97 Aligned_cols=211 Identities=15% Similarity=0.117 Sum_probs=136.3
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc--ccccccc----ccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA--TGLLDLK----NRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~--~~~~~~~----~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|++|||||+|+||.+++++|+++|++ |++.+|+.+.. +...... ...+.++.++.+|++|.+++.++++..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~- 77 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYE--VHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEI- 77 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCE--EEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhC-
Confidence 68999999999999999999999987 88888876431 1111111 111246899999999999999888864
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc-
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV- 181 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~- 181 (282)
++|++||+|+... ... ..+.-...+++|+.++.++++++.+.-.++. .++|++||..
T Consensus 78 ----~~d~ViH~Aa~~~-------~~~----~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~-------~~~v~~SS~~v 135 (343)
T TIGR01472 78 ----KPTEIYNLAAQSH-------VKV----SFEIPEYTADVDGIGTLRLLEAVRTLGLIKS-------VKFYQASTSEL 135 (343)
T ss_pred ----CCCEEEECCcccc-------cch----hhhChHHHHHHHHHHHHHHHHHHHHhCCCcC-------eeEEEeccHHh
Confidence 5899999999753 110 1112245678899999999999876421111 2678888853
Q ss_pred -ccc------CCCCCCCcccchhhHHHHHHHHHHHHHHhccCC-CCeEEEEEecccccCCCCc-------cc--------
Q 023441 182 -GSI------GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKK-DPVICILLHPGTVDTDLSR-------PF-------- 238 (282)
Q Consensus 182 -~~~------~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~-~~i~v~~i~Pg~v~t~~~~-------~~-------- 238 (282)
|.. .+.+..+...|+.||.+.+.+++.++.++.-.. ..+.++...|+.-..-+.. ..
T Consensus 136 yg~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (343)
T TIGR01472 136 YGKVQEIPQNETTPFYPRSPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKL 215 (343)
T ss_pred hCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCce
Confidence 321 112233557899999999999999988763210 0122233344421110100 00
Q ss_pred --ccCCCCCCCCChHHHHHHHHHHHhhc
Q 023441 239 --QRNVPEGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 239 --~~~~~~~~~~~~~~~a~~~~~~~~~~ 264 (282)
........+...++++++++.++...
T Consensus 216 ~~g~g~~~rd~i~V~D~a~a~~~~~~~~ 243 (343)
T TIGR01472 216 YLGNLDAKRDWGHAKDYVEAMWLMLQQD 243 (343)
T ss_pred eeCCCccccCceeHHHHHHHHHHHHhcC
Confidence 00112245578999999999888643
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-16 Score=135.09 Aligned_cols=213 Identities=19% Similarity=0.189 Sum_probs=154.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc--ccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL--LDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~--~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.+++|+||||||-||.+++++|+++|+. |....|+++..++. ...++..+++.+.+.+|++|.+++.++++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~--V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~----- 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYT--VRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID----- 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCE--EEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh-----
Confidence 6899999999999999999999999998 99999999886552 34444556689999999999999999998
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
.+|+++|.|.... ... .+ .-.+.++..+.|+.++++++...- +..+||+.||.++..
T Consensus 78 --gcdgVfH~Asp~~-------~~~-~~----~e~~li~pav~Gt~nVL~ac~~~~---------sVkrvV~TSS~aAv~ 134 (327)
T KOG1502|consen 78 --GCDGVFHTASPVD-------FDL-ED----PEKELIDPAVKGTKNVLEACKKTK---------SVKRVVYTSSTAAVR 134 (327)
T ss_pred --CCCEEEEeCccCC-------CCC-CC----cHHhhhhHHHHHHHHHHHHHhccC---------CcceEEEeccHHHhc
Confidence 5899999999764 111 01 112578889999999999987643 124899999998876
Q ss_pred CCCCC-CC--------c----------ccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc------
Q 023441 185 GDNRL-GG--------W----------HSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ------ 239 (282)
Q Consensus 185 ~~~~~-~~--------~----------~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~------ 239 (282)
.+.+. +. | ..|..||. ++.-.|.+++..+ ++..++|+|+.|-.|...+..
T Consensus 135 ~~~~~~~~~~vvdE~~wsd~~~~~~~~~~Y~~sK~----lAEkaAw~fa~e~-~~~lv~inP~lV~GP~l~~~l~~s~~~ 209 (327)
T KOG1502|consen 135 YNGPNIGENSVVDEESWSDLDFCRCKKLWYALSKT----LAEKAAWEFAKEN-GLDLVTINPGLVFGPGLQPSLNSSLNA 209 (327)
T ss_pred cCCcCCCCCcccccccCCcHHHHHhhHHHHHHHHH----HHHHHHHHHHHhC-CccEEEecCCceECCCcccccchhHHH
Confidence 53111 11 1 13555554 4444445566554 799999999999888665411
Q ss_pred ------c---CCC--CCCCCChHHHHHHHHHHHhhcCCCCCCceeecC
Q 023441 240 ------R---NVP--EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWD 276 (282)
Q Consensus 240 ------~---~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d 276 (282)
. ..+ ...+.+.+++|.+-+.+++..+ .+|+++-..
T Consensus 210 ~l~~i~G~~~~~~n~~~~~VdVrDVA~AHv~a~E~~~--a~GRyic~~ 255 (327)
T KOG1502|consen 210 LLKLIKGLAETYPNFWLAFVDVRDVALAHVLALEKPS--AKGRYICVG 255 (327)
T ss_pred HHHHHhcccccCCCCceeeEeHHHHHHHHHHHHcCcc--cCceEEEec
Confidence 1 111 1234688999999999988654 447777644
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-16 Score=135.45 Aligned_cols=211 Identities=15% Similarity=0.153 Sum_probs=142.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc--ccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG--ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~--~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
+++||||+|+||.+++++|++.|....|++.+|.... .+....... ..++.++.+|++|++++.++++.. +
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~-----~ 73 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLED--NPRYRFVKGDIGDRELVSRLFTEH-----Q 73 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhcc--CCCcEEEEcCCcCHHHHHHHHhhc-----C
Confidence 4899999999999999999998843348777764321 111222111 236888999999999998888753 5
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc--cccC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV--GSIG 185 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~--~~~~ 185 (282)
+|++||+++... . +.+.+..+..+++|+.++.++++.+.....+ .+++++||.. +...
T Consensus 74 ~d~vi~~a~~~~-------~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---------~~~i~~Ss~~v~g~~~ 133 (317)
T TIGR01181 74 PDAVVHFAAESH-------V----DRSISGPAAFIETNVVGTYTLLEAVRKYWHE---------FRFHHISTDEVYGDLE 133 (317)
T ss_pred CCEEEEcccccC-------c----hhhhhCHHHHHHHHHHHHHHHHHHHHhcCCC---------ceEEEeeccceeCCCC
Confidence 999999999753 1 1122345677899999999999987765321 2688888853 2111
Q ss_pred -------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc--c--------cccC--CC---
Q 023441 186 -------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR--P--------FQRN--VP--- 243 (282)
Q Consensus 186 -------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~--~--------~~~~--~~--- 243 (282)
..+......|+.+|.+.+.+++.++.+. ++++.++.|+.+..+... . .... .+
T Consensus 134 ~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~i~R~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (317)
T TIGR01181 134 KGDAFTETTPLAPSSPYSASKAASDHLVRAYHRTY-----GLPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVYG 208 (317)
T ss_pred CCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh-----CCCeEEEEeccccCCCCCcccHHHHHHHHHhcCCCceEeC
Confidence 1122344579999999999999988775 677888899877655321 0 0001 00
Q ss_pred ----CCCCCChHHHHHHHHHHHhhcCCCCCCceeec
Q 023441 244 ----EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 244 ----~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~ 275 (282)
...+...+++++.+..++... ..|..|.+
T Consensus 209 ~g~~~~~~i~v~D~a~~~~~~~~~~---~~~~~~~~ 241 (317)
T TIGR01181 209 DGQQVRDWLYVEDHCRAIYLVLEKG---RVGETYNI 241 (317)
T ss_pred CCceEEeeEEHHHHHHHHHHHHcCC---CCCceEEe
Confidence 123457899999998888642 34455554
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-15 Score=129.15 Aligned_cols=203 Identities=15% Similarity=0.131 Sum_probs=130.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCCh-hHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE-STIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~-~~~~~~~~~~~ 102 (282)
-..++++++||||+|+||++++++|+++|++ |++..|+.++...... . +.++.++++|++|. +++.+.+.
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~--V~~~~R~~~~~~~~~~---~-~~~~~~~~~Dl~d~~~~l~~~~~--- 83 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFA--VKAGVRDVDKAKTSLP---Q-DPSLQIVRADVTEGSDKLVEAIG--- 83 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCE--EEEEecCHHHHHHhcc---c-CCceEEEEeeCCCCHHHHHHHhh---
Confidence 3455789999999999999999999999987 8888998765432211 1 24689999999984 33322220
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
.++|++|+|+|.... ..+ ...+++|+.+..++++++.. .+. +++|++||...
T Consensus 84 ---~~~d~vi~~~g~~~~------~~~---------~~~~~~n~~~~~~ll~a~~~----~~~------~~iV~iSS~~v 135 (251)
T PLN00141 84 ---DDSDAVICATGFRRS------FDP---------FAPWKVDNFGTVNLVEACRK----AGV------TRFILVSSILV 135 (251)
T ss_pred ---cCCCEEEECCCCCcC------CCC---------CCceeeehHHHHHHHHHHHH----cCC------CEEEEEccccc
Confidence 369999999986420 110 11256888888888888642 222 28999999753
Q ss_pred ccCCCCCCCcccchhhHHHHHHH-HHHHHHH-hccCCCCeEEEEEecccccCCCCcc-cc---cCCCCCCCCChHHHHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQL-TKSVSVE-FGRKKDPVICILLHPGTVDTDLSRP-FQ---RNVPEGKLFTKEFSVQK 256 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l-~~~la~e-~~~~~~~i~v~~i~Pg~v~t~~~~~-~~---~~~~~~~~~~~~~~a~~ 256 (282)
.-...+.+....|...|.+...+ .+..+.+ +... ++++++++||++.++.... +. .........+++++|+.
T Consensus 136 ~g~~~~~~~~~~~~~~~~~~~~~~~k~~~e~~l~~~--gi~~~iirpg~~~~~~~~~~~~~~~~~~~~~~~i~~~dvA~~ 213 (251)
T PLN00141 136 NGAAMGQILNPAYIFLNLFGLTLVAKLQAEKYIRKS--GINYTIVRPGGLTNDPPTGNIVMEPEDTLYEGSISRDQVAEV 213 (251)
T ss_pred cCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHhc--CCcEEEEECCCccCCCCCceEEECCCCccccCcccHHHHHHH
Confidence 22111122234566666544332 3333333 3444 7999999999997764321 11 11112245799999999
Q ss_pred HHHHHhhcC
Q 023441 257 LLNIINNIK 265 (282)
Q Consensus 257 ~~~~~~~~~ 265 (282)
+..++....
T Consensus 214 ~~~~~~~~~ 222 (251)
T PLN00141 214 AVEALLCPE 222 (251)
T ss_pred HHHHhcChh
Confidence 999987543
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=134.79 Aligned_cols=207 Identities=12% Similarity=0.008 Sum_probs=141.0
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc-----cCCCceeEEEeeCCChhHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN-----RFPERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~-----~~~~~v~~~~~Dls~~~~~~~~ 97 (282)
..+.++|++|||||+|+||.+++++|+++|++ |+++.|+.+..+.+.++.. ....++.++.+|++|.+++.++
T Consensus 48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~--V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 125 (367)
T PLN02686 48 GADAEARLVCVTGGVSFLGLAIVDRLLRHGYS--VRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEA 125 (367)
T ss_pred ccCCCCCEEEEECCchHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHH
Confidence 45678999999999999999999999999988 8887887654433322110 0113588999999999999888
Q ss_pred HHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 98 AKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
++ ++|.++|.++.... .. .. .......++|+.++.++++++...- + ..++|++
T Consensus 126 i~-------~~d~V~hlA~~~~~------~~-~~----~~~~~~~~~nv~gt~~llea~~~~~---~------v~r~V~~ 178 (367)
T PLN02686 126 FD-------GCAGVFHTSAFVDP------AG-LS----GYTKSMAELEAKASENVIEACVRTE---S------VRKCVFT 178 (367)
T ss_pred HH-------hccEEEecCeeecc------cc-cc----cccchhhhhhHHHHHHHHHHHHhcC---C------ccEEEEe
Confidence 76 36899999987531 11 00 0112345678999999998875421 1 1278888
Q ss_pred ecccc-ccC----CC---------------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc
Q 023441 178 SARVG-SIG----DN---------------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP 237 (282)
Q Consensus 178 ss~~~-~~~----~~---------------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~ 237 (282)
||..+ ..+ .. +......|+.+|.+.+.+++.++.+. ++++++++|+.+..|....
T Consensus 179 SS~~~~vyg~~~~~~~~~~i~E~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----gl~~v~lRp~~vyGp~~~~ 253 (367)
T PLN02686 179 SSLLACVWRQNYPHDLPPVIDEESWSDESFCRDNKLWYALGKLKAEKAAWRAARGK-----GLKLATICPALVTGPGFFR 253 (367)
T ss_pred ccHHHhcccccCCCCCCcccCCCCCCChhhcccccchHHHHHHHHHHHHHHHHHhc-----CceEEEEcCCceECCCCCC
Confidence 88531 111 00 01122469999999999998887763 7999999999998884321
Q ss_pred c---------ccCC-----CCCCCCChHHHHHHHHHHHhh
Q 023441 238 F---------QRNV-----PEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 238 ~---------~~~~-----~~~~~~~~~~~a~~~~~~~~~ 263 (282)
. .... -...+...++++++++.++..
T Consensus 254 ~~~~~~~~~~~g~~~~~g~g~~~~v~V~Dva~A~~~al~~ 293 (367)
T PLN02686 254 RNSTATIAYLKGAQEMLADGLLATADVERLAEAHVCVYEA 293 (367)
T ss_pred CCChhHHHHhcCCCccCCCCCcCeEEHHHHHHHHHHHHhc
Confidence 0 0000 012356899999999998874
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-15 Score=130.27 Aligned_cols=206 Identities=15% Similarity=0.108 Sum_probs=142.9
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++++||||+|+||..++++|+++|++ |++++|+.+...... ...+.++.+|++|.+++.++++ ++
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~------~~~~~~~~~D~~~~~~l~~~~~-------~~ 65 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEE--VRVLVRPTSDRRNLE------GLDVEIVEGDLRDPASLRKAVA-------GC 65 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCE--EEEEEecCccccccc------cCCceEEEeeCCCHHHHHHHHh-------CC
Confidence 37999999999999999999999987 999999876532211 1268899999999998877765 58
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC-C
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD-N 187 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~-~ 187 (282)
|++||+++... .. .+..+..+++|+.++.++++++...- . +++|++||....... .
T Consensus 66 d~vi~~a~~~~-------~~------~~~~~~~~~~n~~~~~~l~~~~~~~~----~------~~~v~~SS~~~~~~~~~ 122 (328)
T TIGR03466 66 RALFHVAADYR-------LW------APDPEEMYAANVEGTRNLLRAALEAG----V------ERVVYTSSVATLGVRGD 122 (328)
T ss_pred CEEEEeceecc-------cC------CCCHHHHHHHHHHHHHHHHHHHHHhC----C------CeEEEEechhhcCcCCC
Confidence 99999998542 10 12345678899999999999876421 1 288888886543210 0
Q ss_pred --------CC---CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-----------ccCCC--
Q 023441 188 --------RL---GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-----------QRNVP-- 243 (282)
Q Consensus 188 --------~~---~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-----------~~~~~-- 243 (282)
+. .....|+.+|.+.+.+.+.++.+. ++.+..+.|+.+..+..... ....+
T Consensus 123 ~~~~~e~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~ilR~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 197 (328)
T TIGR03466 123 GTPADETTPSSLDDMIGHYKRSKFLAEQAALEMAAEK-----GLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLNGKMPAY 197 (328)
T ss_pred CCCcCccCCCCcccccChHHHHHHHHHHHHHHHHHhc-----CCCEEEEeCCccCCCCCCCCCcHHHHHHHHHcCCCcee
Confidence 00 113479999999999999887663 57788889987755431100 00001
Q ss_pred ---CCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 244 ---EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 244 ---~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.......+++++++..++... ..|..+...++.+
T Consensus 198 ~~~~~~~i~v~D~a~a~~~~~~~~---~~~~~~~~~~~~~ 234 (328)
T TIGR03466 198 VDTGLNLVHVDDVAEGHLLALERG---RIGERYILGGENL 234 (328)
T ss_pred eCCCcceEEHHHHHHHHHHHHhCC---CCCceEEecCCCc
Confidence 123457899999988888653 3566666655444
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.9e-15 Score=130.92 Aligned_cols=209 Identities=12% Similarity=0.131 Sum_probs=136.3
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC--cccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN--GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~--~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
++|||||+|+||.+++++|+++|.+ .|+..++... ..+...... .+.++.++.+|++|.+++.+++++ .+
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~-~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 73 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNLESLADVS--DSERYVFEHADICDRAELDRIFAQ-----HQ 73 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCC-eEEEecCCCccchHHHHHhcc--cCCceEEEEecCCCHHHHHHHHHh-----cC
Confidence 6899999999999999999999976 2444444321 111111111 124678899999999999988875 26
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc--ccc-
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV--GSI- 184 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~--~~~- 184 (282)
+|++||+||.... .. .....+..+++|+.++.++++++.+++.....+ .....++|++||.. +..
T Consensus 74 ~d~vih~A~~~~~------~~-----~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~-~~~~~~~i~~SS~~vyg~~~ 141 (352)
T PRK10084 74 PDAVMHLAAESHV------DR-----SITGPAAFIETNIVGTYVLLEAARNYWSALDED-KKNAFRFHHISTDEVYGDLP 141 (352)
T ss_pred CCEEEECCcccCC------cc-----hhcCchhhhhhhhHHHHHHHHHHHHhccccccc-cccceeEEEecchhhcCCCC
Confidence 9999999997531 00 112345679999999999999998876432110 01123788888853 321
Q ss_pred ---------------CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc--c--------cc
Q 023441 185 ---------------GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR--P--------FQ 239 (282)
Q Consensus 185 ---------------~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~--~--------~~ 239 (282)
.+.+......|+.+|.+.+.+++.++.++ ++.+..+.|+.+..+... . ..
T Consensus 142 ~~~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----g~~~vilr~~~v~Gp~~~~~~~~~~~~~~~~ 216 (352)
T PRK10084 142 HPDEVENSEELPLFTETTAYAPSSPYSASKASSDHLVRAWLRTY-----GLPTIVTNCSNNYGPYHFPEKLIPLVILNAL 216 (352)
T ss_pred ccccccccccCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHh-----CCCEEEEeccceeCCCcCccchHHHHHHHHh
Confidence 01122345689999999999999988876 344555566665443211 0 00
Q ss_pred -c-C-------CCCCCCCChHHHHHHHHHHHhh
Q 023441 240 -R-N-------VPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 240 -~-~-------~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
. . .....+...++++.+++.++..
T Consensus 217 ~~~~~~~~~~g~~~~~~v~v~D~a~a~~~~l~~ 249 (352)
T PRK10084 217 EGKPLPIYGKGDQIRDWLYVEDHARALYKVVTE 249 (352)
T ss_pred cCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHhc
Confidence 0 0 0112456889999999888864
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-16 Score=134.82 Aligned_cols=210 Identities=20% Similarity=0.165 Sum_probs=141.5
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc-cCC-Cce----eEEEeeCCChhHHHHHHHHHHHH
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN-RFP-ERL----DVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~-~~~-~~v----~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+|||||+|.||.+++++|++.+.. .|++.+|++..+-.+...+. ..+ .++ ..+-+|++|.+.+.+++++.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~-~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~--- 76 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPK-KLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY--- 76 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-S-EEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT-----
T ss_pred CEEEccccHHHHHHHHHHHhcCCC-eEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc---
Confidence 699999999999999999999975 79999999988776555442 222 234 34588999999998888754
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++|+++|.|+.-. .+.-+ +...+.+.+|+.|+.++++++..+-.+ ++|++|+.-+..
T Consensus 77 --~pdiVfHaAA~Kh--------Vpl~E---~~p~eav~tNv~GT~nv~~aa~~~~v~----------~~v~ISTDKAv~ 133 (293)
T PF02719_consen 77 --KPDIVFHAAALKH--------VPLME---DNPFEAVKTNVLGTQNVAEAAIEHGVE----------RFVFISTDKAVN 133 (293)
T ss_dssp --T-SEEEE--------------HHHHC---CCHHHHHHHHCHHHHHHHHHHHHTT-S----------EEEEEEECGCSS
T ss_pred --CCCEEEEChhcCC--------CChHH---hCHHHHHHHHHHHHHHHHHHHHHcCCC----------EEEEccccccCC
Confidence 7999999999853 33333 234577999999999999999876433 899999987754
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCC-------CcccccCCC--------CCCCCC
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL-------SRPFQRNVP--------EGKLFT 249 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~-------~~~~~~~~~--------~~~~~~ 249 (282)
+ ...|++||...+.++.+.+...... +.++.+|.=|.|.-.- .++.....| ...+++
T Consensus 134 P------tnvmGatKrlaE~l~~~~~~~~~~~--~t~f~~VRFGNVlgS~GSVip~F~~Qi~~g~PlTvT~p~mtRffmt 205 (293)
T PF02719_consen 134 P------TNVMGATKRLAEKLVQAANQYSGNS--DTKFSSVRFGNVLGSRGSVIPLFKKQIKNGGPLTVTDPDMTRFFMT 205 (293)
T ss_dssp --------SHHHHHHHHHHHHHHHHCCTSSSS----EEEEEEE-EETTGTTSCHHHHHHHHHTTSSEEECETT-EEEEE-
T ss_pred C------CcHHHHHHHHHHHHHHHHhhhCCCC--CcEEEEEEecceecCCCcHHHHHHHHHHcCCcceeCCCCcEEEEec
Confidence 3 3589999999999999988887555 6888888988885431 112222211 245578
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
+++.++.++....-. ..|..+..|-|
T Consensus 206 i~EAv~Lvl~a~~~~---~~geifvl~mg 231 (293)
T PF02719_consen 206 IEEAVQLVLQAAALA---KGGEIFVLDMG 231 (293)
T ss_dssp HHHHHHHHHHHHHH-----TTEEEEE---
T ss_pred HHHHHHHHHHHHhhC---CCCcEEEecCC
Confidence 999999988877644 36777777754
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=134.92 Aligned_cols=172 Identities=20% Similarity=0.216 Sum_probs=120.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc----cccccccCCCceeEEEeeCCChhHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG----LLDLKNRFPERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~----~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
|++++|+++||||+|+||.+++++|+++|.+ |++.+|....... ........+.++.++.+|++|++++.++++
T Consensus 1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~ 78 (352)
T PLN02240 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYK--VVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFA 78 (352)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHH
Confidence 5788999999999999999999999999987 8888775432211 111111123468899999999999988876
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
.. ++|++||+|+... .. .+.+.+...+++|+.++.++++++... +. +++|++||
T Consensus 79 ~~-----~~d~vih~a~~~~-------~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~------~~~v~~Ss 132 (352)
T PLN02240 79 ST-----RFDAVIHFAGLKA-------VG----ESVAKPLLYYDNNLVGTINLLEVMAKH----GC------KKLVFSSS 132 (352)
T ss_pred hC-----CCCEEEEccccCC-------cc----ccccCHHHHHHHHHHHHHHHHHHHHHc----CC------CEEEEEcc
Confidence 52 6999999999753 11 112345678999999999999876432 11 27888888
Q ss_pred ccccc--------CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEec
Q 023441 180 RVGSI--------GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHP 227 (282)
Q Consensus 180 ~~~~~--------~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~P 227 (282)
....- .+.+......|+.+|.+.+.+++.++.+.. ++.+..+.|
T Consensus 133 ~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~----~~~~~~~R~ 184 (352)
T PLN02240 133 ATVYGQPEEVPCTEEFPLSATNPYGRTKLFIEEICRDIHASDP----EWKIILLRY 184 (352)
T ss_pred HHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcC----CCCEEEEee
Confidence 53221 112233457899999999999998876521 455555554
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-15 Score=122.57 Aligned_cols=215 Identities=15% Similarity=0.170 Sum_probs=153.8
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC--CcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP--NGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~--~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+++|||||.|.||...++++.++.....|+..+.=. ...+.+.+... .++..|+++|++|.+.+.+++++-
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~--~~~~~fv~~DI~D~~~v~~~~~~~----- 73 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVED--SPRYRFVQGDICDRELVDRLFKEY----- 73 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhc--CCCceEEeccccCHHHHHHHHHhc-----
Confidence 478999999999999999999998764456554421 11222333322 258999999999999998888763
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc--cccc
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR--VGSI 184 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~--~~~~ 184 (282)
++|+++|=|+-.. . +.+..+-...+++|+.|++.++++++.+..+ -+++++|.. +|..
T Consensus 74 ~~D~VvhfAAESH----------V-DRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~---------frf~HISTDEVYG~l 133 (340)
T COG1088 74 QPDAVVHFAAESH----------V-DRSIDGPAPFIQTNVVGTYTLLEAARKYWGK---------FRFHHISTDEVYGDL 133 (340)
T ss_pred CCCeEEEechhcc----------c-cccccChhhhhhcchHHHHHHHHHHHHhccc---------ceEEEeccccccccc
Confidence 7999999998543 1 2234455567999999999999999988753 278888873 3332
Q ss_pred C--------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-------------------
Q 023441 185 G--------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------------------- 237 (282)
Q Consensus 185 ~--------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~------------------- 237 (282)
. ..|+.+.++||||||+.+.|++++.+-+ |+.+....+..-..|..-+
T Consensus 134 ~~~~~~FtE~tp~~PsSPYSASKAasD~lVray~~TY-----glp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpv 208 (340)
T COG1088 134 GLDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRTY-----GLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPV 208 (340)
T ss_pred cCCCCCcccCCCCCCCCCcchhhhhHHHHHHHHHHHc-----CCceEEecCCCCcCCCcCchhhhHHHHHHHHcCCCCce
Confidence 2 3456778999999999999999999998 5666666665555553211
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 238 FQRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 238 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
+........++..++=+.++..++..+. -|..+++.|+
T Consensus 209 YGdG~~iRDWl~VeDh~~ai~~Vl~kg~---~GE~YNIgg~ 246 (340)
T COG1088 209 YGDGLQIRDWLYVEDHCRAIDLVLTKGK---IGETYNIGGG 246 (340)
T ss_pred ecCCcceeeeEEeHhHHHHHHHHHhcCc---CCceEEeCCC
Confidence 0111223567788999999988887654 4888887654
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-14 Score=126.89 Aligned_cols=213 Identities=17% Similarity=0.183 Sum_probs=140.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++|||||+|+||.+++++|+++|++ |++.+|............... .++.++.+|+++.+++.++++. +++|
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~--V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~-----~~~d 72 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHE--VVVLDNLSNGSPEALKRGERI-TRVTFVEGDLRDRELLDRLFEE-----HKID 72 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCe--EEEEeCCCccchhhhhhhccc-cceEEEECCCCCHHHHHHHHHh-----CCCc
Confidence 4799999999999999999999988 777766443322211111111 1678899999999999888774 4799
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC----
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG---- 185 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~---- 185 (282)
++|||+|... ... ......+.+.+|+.++..+++.+... +. .+++++||......
T Consensus 73 ~vv~~ag~~~-------~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~------~~~v~~ss~~~~g~~~~~ 131 (328)
T TIGR01179 73 AVIHFAGLIA-------VGE----SVQDPLKYYRNNVVNTLNLLEAMQQT----GV------KKFIFSSSAAVYGEPSSI 131 (328)
T ss_pred EEEECccccC-------cch----hhcCchhhhhhhHHHHHHHHHHHHhc----CC------CEEEEecchhhcCCCCCC
Confidence 9999999763 111 11233456889999999998876432 21 27888887543211
Q ss_pred ----CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------------------c-
Q 023441 186 ----DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------------------Q- 239 (282)
Q Consensus 186 ----~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------------------~- 239 (282)
..+......|+.+|++++.+++.++++.. ++++..+.|+.+..+..... .
T Consensus 132 ~~~e~~~~~~~~~y~~sK~~~e~~~~~~~~~~~----~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (328)
T TIGR01179 132 PISEDSPLGPINPYGRSKLMSERILRDLSKADP----GLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKR 207 (328)
T ss_pred CccccCCCCCCCchHHHHHHHHHHHHHHHHhcc----CCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCC
Confidence 11122446799999999999998877522 67788888876655421100 0
Q ss_pred cC-------CC------CCCCCChHHHHHHHHHHHhhcCCCCCCceeec
Q 023441 240 RN-------VP------EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 240 ~~-------~~------~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~ 275 (282)
.. .+ ...+...+++++.+..++........+..|.+
T Consensus 208 ~~~~~~~~~~~~~~g~~~~~~v~~~D~a~~~~~~~~~~~~~~~~~~~n~ 256 (328)
T TIGR01179 208 DKLTIFGTDYPTPDGTCVRDYIHVMDLADAHLAALEYLLNGGESHVYNL 256 (328)
T ss_pred CCeEEeCCcccCCCCceEEeeeeHHHHHHHHHHHHhhhhcCCCcceEEc
Confidence 00 00 02346789999999988865333334555655
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-14 Score=128.39 Aligned_cols=219 Identities=14% Similarity=0.088 Sum_probs=144.6
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccc----cCCCceeEEEeeCCChhHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKN----RFPERLDVLQLDLTVESTIEA 96 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~----~~~~~v~~~~~Dls~~~~~~~ 96 (282)
+.+-|++|++|||||+|-||..++++|.++|++ |++++|....... ...... ....++.++.+|+.|.+++.+
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~--V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~ 86 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFLNQT--VIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQK 86 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHCCCE--EEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHH
Confidence 346678899999999999999999999999987 8888886543221 111111 111368899999999888776
Q ss_pred HHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEE
Q 023441 97 SAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVAN 176 (282)
Q Consensus 97 ~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~ 176 (282)
+++ .+|++||.|+... . +.. .+.....+++|+.++.++++.+... +- .++|+
T Consensus 87 ~~~-------~~d~ViHlAa~~~-------~-~~~---~~~~~~~~~~Nv~gt~nll~~~~~~----~~------~~~v~ 138 (348)
T PRK15181 87 ACK-------NVDYVLHQAALGS-------V-PRS---LKDPIATNSANIDGFLNMLTAARDA----HV------SSFTY 138 (348)
T ss_pred Hhh-------CCCEEEECccccC-------c-hhh---hhCHHHHHHHHHHHHHHHHHHHHHc----CC------CeEEE
Confidence 665 4899999999753 1 111 1223356889999999999987643 11 27888
Q ss_pred eeccc--cccCC------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc------------
Q 023441 177 LSARV--GSIGD------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR------------ 236 (282)
Q Consensus 177 ~ss~~--~~~~~------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~------------ 236 (282)
+||.. +.... .+......|+.+|...+.+++.++.+. ++++..+.|+.+..+-..
T Consensus 139 ~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~ 213 (348)
T PRK15181 139 AASSSTYGDHPDLPKIEERIGRPLSPYAVTKYVNELYADVFARSY-----EFNAIGLRYFNVFGRRQNPNGAYSAVIPRW 213 (348)
T ss_pred eechHhhCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHh-----CCCEEEEEecceeCcCCCCCCccccCHHHH
Confidence 88753 32111 011234579999999999988876664 677888889887655211
Q ss_pred --ccccCCC---------CCCCCChHHHHHHHHHHHhhcCCCCCCceeec
Q 023441 237 --PFQRNVP---------EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 237 --~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~ 275 (282)
......+ ...+...++++.+++..+........|..|.+
T Consensus 214 ~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~~yni 263 (348)
T PRK15181 214 ILSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSATTNDLASKNKVYNV 263 (348)
T ss_pred HHHHHcCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhcccccCCCCEEEe
Confidence 0000000 12446789999998876653222234555665
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=125.64 Aligned_cols=217 Identities=15% Similarity=0.082 Sum_probs=146.8
Q ss_pred EEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccEE
Q 023441 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLL 111 (282)
Q Consensus 32 lItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~l 111 (282)
|||||+|.||.+++++|+++|....|.+.++....... ...... ....++.+|++|.+++.++++ .+|++
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~--~~~~~~-~~~~~~~~Di~d~~~l~~a~~-------g~d~V 70 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL--KDLQKS-GVKEYIQGDITDPESLEEALE-------GVDVV 70 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc--hhhhcc-cceeEEEeccccHHHHHHHhc-------CCceE
Confidence 69999999999999999999953347777776654321 111111 123399999999999999887 57999
Q ss_pred EECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC---C--
Q 023441 112 INASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG---D-- 186 (282)
Q Consensus 112 v~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~---~-- 186 (282)
||+|+... ... ....+..+.+|+.|+-++++++...- ..++|++||...... .
T Consensus 71 ~H~Aa~~~-------~~~-----~~~~~~~~~vNV~GT~nvl~aa~~~~----------VkrlVytSS~~vv~~~~~~~~ 128 (280)
T PF01073_consen 71 FHTAAPVP-------PWG-----DYPPEEYYKVNVDGTRNVLEAARKAG----------VKRLVYTSSISVVFDNYKGDP 128 (280)
T ss_pred EEeCcccc-------ccC-----cccHHHHHHHHHHHHHHHHHHHHHcC----------CCEEEEEcCcceeEeccCCCC
Confidence 99999864 111 23456789999999999999887532 138999999876543 1
Q ss_pred -----C----CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-----------------
Q 023441 187 -----N----RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------------- 240 (282)
Q Consensus 187 -----~----~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------------- 240 (282)
+ +......|+.||+..+.++......-...+.+++..+|+|..|..+....+.+
T Consensus 129 ~~~~dE~~~~~~~~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~~~~~~~g~~~~~~g~ 208 (280)
T PF01073_consen 129 IINGDEDTPYPSSPLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVPRLVKMVRSGLFLFQIGD 208 (280)
T ss_pred cccCCcCCcccccccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCcccccccchhhHHHHhcccceeecC
Confidence 1 11134579999999998877654411122226899999998887663221110
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcC-----CCCCCceeec-CCccc
Q 023441 241 NVPEGKLFTKEFSVQKLLNIINNIK-----SHDNGKFFAW-DGQEI 280 (282)
Q Consensus 241 ~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~g~~~~~-d~~~~ 280 (282)
..........+++|.+.+....... ....|+.|.+ |++.+
T Consensus 209 ~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~~p~ 254 (280)
T PF01073_consen 209 GNNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQAYFITDGEPV 254 (280)
T ss_pred CCceECcEeHHHHHHHHHHHHHHhccccccccCCCcEEEEECCCcc
Confidence 1112345578999998887665433 3467777665 55544
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-14 Score=127.39 Aligned_cols=166 Identities=17% Similarity=0.125 Sum_probs=113.3
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc-CCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR-FPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~-~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++|||||+|+||++++++|+++|.+ |++.+|.............. .+.++.++.+|++|.+++.++++. .++
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~ 74 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGHD--VVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHD-----HAI 74 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCe--EEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhc-----CCC
Confidence 6899999999999999999999988 77777654432221111111 134678899999999988887764 369
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc--C-
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI--G- 185 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~--~- 185 (282)
|++||+|+... ... ..+.....+.+|+.++.++++.+... +. +++|++||....- .
T Consensus 75 d~vvh~a~~~~-------~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~------~~~v~~Ss~~~yg~~~~ 133 (338)
T PRK10675 75 DTVIHFAGLKA-------VGE----SVQKPLEYYDNNVNGTLRLISAMRAA----NV------KNLIFSSSATVYGDQPK 133 (338)
T ss_pred CEEEECCcccc-------ccc----hhhCHHHHHHHHHHHHHHHHHHHHHc----CC------CEEEEeccHHhhCCCCC
Confidence 99999999753 111 11223457889999999998876432 22 2788888864321 1
Q ss_pred -----CCCC-CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEec
Q 023441 186 -----DNRL-GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHP 227 (282)
Q Consensus 186 -----~~~~-~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~P 227 (282)
..+. .....|+.+|.+.+.+++.++++.. ++++..+.|
T Consensus 134 ~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~----~~~~~ilR~ 177 (338)
T PRK10675 134 IPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQP----DWSIALLRY 177 (338)
T ss_pred CccccccCCCCCCChhHHHHHHHHHHHHHHHHhcC----CCcEEEEEe
Confidence 0111 2357899999999999999876642 344444454
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-14 Score=127.85 Aligned_cols=211 Identities=16% Similarity=0.185 Sum_probs=137.2
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc---ccccccccC-------C-CceeEEEeeCCChh------
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT---GLLDLKNRF-------P-ERLDVLQLDLTVES------ 92 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~---~~~~~~~~~-------~-~~v~~~~~Dls~~~------ 92 (282)
+++||||||+||.+++++|+++|....|+...|+..... .+.+....+ . .++.++.+|++++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 589999999999999999999994334888899876321 111111111 1 47999999998753
Q ss_pred HHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCcccee
Q 023441 93 TIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVA 172 (282)
Q Consensus 93 ~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~ 172 (282)
....+. ..+|++|||++... .. ..++....+|+.++.++++.+...- . .
T Consensus 81 ~~~~~~-------~~~d~vih~a~~~~-------~~-------~~~~~~~~~nv~g~~~ll~~a~~~~----~------~ 129 (367)
T TIGR01746 81 EWERLA-------ENVDTIVHNGALVN-------WV-------YPYSELRAANVLGTREVLRLAASGR----A------K 129 (367)
T ss_pred HHHHHH-------hhCCEEEeCCcEec-------cC-------CcHHHHhhhhhHHHHHHHHHHhhCC----C------c
Confidence 222222 36999999999763 11 1244567899999999988775421 1 2
Q ss_pred EEEEeeccccccCCC-------------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--
Q 023441 173 VVANLSARVGSIGDN-------------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-- 237 (282)
Q Consensus 173 ~iv~~ss~~~~~~~~-------------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~-- 237 (282)
.++++||........ .......|+.+|.+.+.+.+.++.. +++++.+.||.+..+....
T Consensus 130 ~~v~iSS~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~------g~~~~i~Rpg~v~G~~~~g~~ 203 (367)
T TIGR01746 130 PLHYVSTISVLAAIDLSTVTEDDAIVTPPPGLAGGYAQSKWVAELLVREASDR------GLPVTIVRPGRILGNSYTGAI 203 (367)
T ss_pred eEEEEccccccCCcCCCCccccccccccccccCCChHHHHHHHHHHHHHHHhc------CCCEEEECCCceeecCCCCCC
Confidence 688999876543210 0112346999999999888765443 6888899999987641110
Q ss_pred -----------------cccCCC--CCCCCChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 238 -----------------FQRNVP--EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 238 -----------------~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
..+... ...+.+.+++++.++.++.......+|..+.+.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~vddva~ai~~~~~~~~~~~~~~~~~v~~ 262 (367)
T TIGR01746 204 NSSDILWRMVKGCLALGAYPDSPELTEDLTPVDYVARAIVALSSQPAASAGGPVFHVVN 262 (367)
T ss_pred CchhHHHHHHHHHHHhCCCCCCCccccCcccHHHHHHHHHHHHhCCCcccCCceEEecC
Confidence 011111 1235678999999998886544323366666544
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=116.39 Aligned_cols=204 Identities=18% Similarity=0.179 Sum_probs=147.7
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccE
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNL 110 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~ 110 (282)
||||||+|-||.+++++|.++|.. |+...|............ ++.++.+|++|.++++++++.. .+|.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~--v~~~~~~~~~~~~~~~~~-----~~~~~~~dl~~~~~~~~~~~~~-----~~d~ 68 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHE--VIVLSRSSNSESFEEKKL-----NVEFVIGDLTDKEQLEKLLEKA-----NIDV 68 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTE--EEEEESCSTGGHHHHHHT-----TEEEEESETTSHHHHHHHHHHH-----TESE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCc--cccccccccccccccccc-----eEEEEEeecccccccccccccc-----CceE
Confidence 699999999999999999999988 777777776543222211 7899999999999999999876 7999
Q ss_pred EEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC----
Q 023441 111 LINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD---- 186 (282)
Q Consensus 111 lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~---- 186 (282)
+||+++... ...........++.|+.+..++++.+...-. .+++++||.......
T Consensus 69 vi~~a~~~~-----------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~----------~~~i~~sS~~~y~~~~~~~ 127 (236)
T PF01370_consen 69 VIHLAAFSS-----------NPESFEDPEEIIEANVQGTRNLLEAAREAGV----------KRFIFLSSASVYGDPDGEP 127 (236)
T ss_dssp EEEEBSSSS-----------HHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT----------SEEEEEEEGGGGTSSSSSS
T ss_pred EEEeecccc-----------ccccccccccccccccccccccccccccccc----------ccccccccccccccccccc
Confidence 999999752 0111245567788899999999988875433 178888885432211
Q ss_pred ----CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCC---Cc----------ccccC--------
Q 023441 187 ----NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL---SR----------PFQRN-------- 241 (282)
Q Consensus 187 ----~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~---~~----------~~~~~-------- 241 (282)
.+......|+.+|...+.+.+.+..+. ++++..+.|+.+..+. .. .....
T Consensus 128 ~~e~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-----~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (236)
T PF01370_consen 128 IDEDSPINPLSPYGASKRAAEELLRDYAKKY-----GLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGD 202 (236)
T ss_dssp BETTSGCCHSSHHHHHHHHHHHHHHHHHHHH-----TSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEEST
T ss_pred ccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccchhhHHhhcCCcccccCC
Confidence 111244569999999999999888876 6889999999887766 11 00001
Q ss_pred -CCCCCCCChHHHHHHHHHHHhhcCCCCCCceee
Q 023441 242 -VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFA 274 (282)
Q Consensus 242 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~ 274 (282)
.........+++++.++.++.... ..|..|+
T Consensus 203 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~yN 234 (236)
T PF01370_consen 203 GSQVRDFIHVDDLAEAIVAALENPK--AAGGIYN 234 (236)
T ss_dssp SSCEEEEEEHHHHHHHHHHHHHHSC--TTTEEEE
T ss_pred CCCccceEEHHHHHHHHHHHHhCCC--CCCCEEE
Confidence 111234578999999999998765 4555554
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-13 Score=102.77 Aligned_cols=219 Identities=17% Similarity=0.190 Sum_probs=163.4
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc--
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY-- 105 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~-- 105 (282)
-++|+|.||-+.+|.+++.+|.+.|+. |.-++-.+.+.. +.-.++..|-+=.++-+++++++.+.+
T Consensus 3 agrVivYGGkGALGSacv~~Fkannyw--V~siDl~eNe~A----------d~sI~V~~~~swtEQe~~v~~~vg~sL~g 70 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANNYW--VLSIDLSENEQA----------DSSILVDGNKSWTEQEQSVLEQVGSSLQG 70 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcCeE--EEEEeecccccc----------cceEEecCCcchhHHHHHHHHHHHHhhcc
Confidence 468999999999999999999999987 777666554322 223344555555567777777777766
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
.++|.+++.||....+++.. ..+ ...-+.++.-.+.....-.+.+...++..+ ..-......+.-+
T Consensus 71 ekvDav~CVAGGWAGGnAks--Kdl----~KNaDLMwKQSvwtSaIsa~lAt~HLK~GG--------LL~LtGAkaAl~g 136 (236)
T KOG4022|consen 71 EKVDAVFCVAGGWAGGNAKS--KDL----VKNADLMWKQSVWTSAISAKLATTHLKPGG--------LLQLTGAKAALGG 136 (236)
T ss_pred cccceEEEeeccccCCCcch--hhh----hhchhhHHHHHHHHHHHHHHHHHhccCCCc--------eeeecccccccCC
Confidence 36999999999875332210 011 122344566667777777777777776543 5555555555544
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhcC
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 265 (282)
.|+.-.|+++|++++.++++|+.+-.....+-.+..|.|-..+|||.+...++.+...+.+-+++++..+....+.+
T Consensus 137 ---TPgMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKwMP~ADfssWTPL~fi~e~flkWtt~~~ 213 (236)
T KOG4022|consen 137 ---TPGMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKWMPNADFSSWTPLSFISEHFLKWTTETS 213 (236)
T ss_pred ---CCcccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccccccCCCCcccCcccHHHHHHHHHHHhccCC
Confidence 77888999999999999999998876666688999999999999999998888888899888999999999988888
Q ss_pred CCCCCceeec
Q 023441 266 SHDNGKFFAW 275 (282)
Q Consensus 266 ~~~~g~~~~~ 275 (282)
+..+|..+.+
T Consensus 214 RPssGsLlqi 223 (236)
T KOG4022|consen 214 RPSSGSLLQI 223 (236)
T ss_pred CCCCCceEEE
Confidence 8888888764
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-13 Score=123.68 Aligned_cols=214 Identities=19% Similarity=0.188 Sum_probs=138.6
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcC-CCcEEEEeecCCCccccccccc-ccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKN-DKGCVIATCRNPNGATGLLDLK-NRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G-~~~~vi~~~r~~~~~~~~~~~~-~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++.+++|||||+|.||..++++|+++| .+ |++++|+........... .....++.++.+|++|.+.+.++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~--V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~---- 85 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHK--VLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIK---- 85 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCE--EEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhh----
Confidence 444689999999999999999999984 66 888888765433222110 0122468999999999988877765
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.+|++||+|+... ..... ..-.+.+..|+.++.++++++...- .++|++||....
T Consensus 86 ---~~d~ViHlAa~~~-------~~~~~----~~~~~~~~~n~~gt~~ll~aa~~~~-----------~r~v~~SS~~vY 140 (386)
T PLN02427 86 ---MADLTINLAAICT-------PADYN----TRPLDTIYSNFIDALPVVKYCSENN-----------KRLIHFSTCEVY 140 (386)
T ss_pred ---cCCEEEEcccccC-------hhhhh----hChHHHHHHHHHHHHHHHHHHHhcC-----------CEEEEEeeeeee
Confidence 3799999999753 11110 1112345679999999988775321 178888885422
Q ss_pred cC--------CCCC----------------------CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC
Q 023441 184 IG--------DNRL----------------------GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233 (282)
Q Consensus 184 ~~--------~~~~----------------------~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~ 233 (282)
-. ..+. .....|+.+|.+.+.+.+.++... ++.+..+.|+.+..+
T Consensus 141 g~~~~~~~~e~~p~~~~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----g~~~~ilR~~~vyGp 215 (386)
T PLN02427 141 GKTIGSFLPKDHPLRQDPAFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAEN-----GLEFTIVRPFNWIGP 215 (386)
T ss_pred CCCcCCCCCcccccccccccccccccccccccCCCCccccchHHHHHHHHHHHHHHHhhc-----CCceEEecccceeCC
Confidence 10 0000 012369999999998888765543 677888899887665
Q ss_pred CCc---------------------ccccCCC---------CCCCCChHHHHHHHHHHHhhcCCCCCCceeecC
Q 023441 234 LSR---------------------PFQRNVP---------EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWD 276 (282)
Q Consensus 234 ~~~---------------------~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d 276 (282)
... ......+ ...+...++++++++.++.... ...|..|.+-
T Consensus 216 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~-~~~g~~yni~ 287 (386)
T PLN02427 216 RMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPA-RANGHIFNVG 287 (386)
T ss_pred CCCccccccccccccchHHHHHHHHHhcCCCeEEECCCCceECcEeHHHHHHHHHHHHhCcc-cccCceEEeC
Confidence 311 0001111 1245789999999998886432 2345556654
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.2e-13 Score=128.56 Aligned_cols=213 Identities=14% Similarity=0.120 Sum_probs=141.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhH-HHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVEST-IEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~-~~~~~~~~ 101 (282)
.-++++++|||||+|.||.+++++|+++ |++ |+..+|+...... ... ..++.++.+|++|..+ ++++++
T Consensus 311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~--V~~l~r~~~~~~~---~~~--~~~~~~~~gDl~d~~~~l~~~l~-- 381 (660)
T PRK08125 311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYE--VYGLDIGSDAISR---FLG--HPRFHFVEGDISIHSEWIEYHIK-- 381 (660)
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHhCCCcE--EEEEeCCchhhhh---hcC--CCceEEEeccccCcHHHHHHHhc--
Confidence 4467899999999999999999999986 677 8888987643221 111 1368899999998665 333332
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
++|++||+|+... .... . ......+++|+.++.++++++...- .++|++||..
T Consensus 382 -----~~D~ViHlAa~~~-------~~~~-~---~~~~~~~~~Nv~~t~~ll~a~~~~~-----------~~~V~~SS~~ 434 (660)
T PRK08125 382 -----KCDVVLPLVAIAT-------PIEY-T---RNPLRVFELDFEENLKIIRYCVKYN-----------KRIIFPSTSE 434 (660)
T ss_pred -----CCCEEEECccccC-------chhh-c---cCHHHHHHhhHHHHHHHHHHHHhcC-----------CeEEEEcchh
Confidence 5899999999763 1111 1 1223568899999999999887531 1788888853
Q ss_pred ccc--CC----C--CC-------CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc---------
Q 023441 182 GSI--GD----N--RL-------GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--------- 237 (282)
Q Consensus 182 ~~~--~~----~--~~-------~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--------- 237 (282)
..- .. + +. .....|+.||.+.+.+.+.+++++ ++++..+.|+.+..+....
T Consensus 435 vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~-----g~~~~ilR~~~vyGp~~~~~~~~~~~~~ 509 (660)
T PRK08125 435 VYGMCTDKYFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKE-----GLRFTLFRPFNWMGPRLDNLNAARIGSS 509 (660)
T ss_pred hcCCCCCCCcCccccccccCCCCCCccchHHHHHHHHHHHHHHHHhc-----CCceEEEEEceeeCCCcccccccccccc
Confidence 221 00 0 00 112369999999999999887664 5777778888876553210
Q ss_pred ---------cccC---------CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 238 ---------FQRN---------VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 238 ---------~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
.... .....+...++++++++.++........|..|.+-+
T Consensus 510 ~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~~~~l~~~~~~~~g~iyni~~ 567 (660)
T PRK08125 510 RAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALFRIIENKDNRCDGQIINIGN 567 (660)
T ss_pred chHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHHHHHHhccccccCCeEEEcCC
Confidence 0000 011245678999999988887543234566666543
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.7e-13 Score=120.51 Aligned_cols=207 Identities=13% Similarity=0.093 Sum_probs=136.8
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc--ccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL--LDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~--~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.-++++++||||+|.||++++++|+++|++ |++++|+..+.... .+.......++.++.+|++|.+++.++++...
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~--V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 134 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYN--VVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEG 134 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhC
Confidence 346789999999999999999999999987 99999987654321 11111112468999999999999998887531
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+++|++|||++... .. ....+++|+.+..++++++.. .+. .++|++||.+.
T Consensus 135 ---~~~D~Vi~~aa~~~-------~~---------~~~~~~vn~~~~~~ll~aa~~----~gv------~r~V~iSS~~v 185 (390)
T PLN02657 135 ---DPVDVVVSCLASRT-------GG---------VKDSWKIDYQATKNSLDAGRE----VGA------KHFVLLSAICV 185 (390)
T ss_pred ---CCCcEEEECCccCC-------CC---------CccchhhHHHHHHHHHHHHHH----cCC------CEEEEEeeccc
Confidence 26999999998532 11 112356788888888887643 222 28999999864
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc---ccccCC--------C--CCCCCC
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR---PFQRNV--------P--EGKLFT 249 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~---~~~~~~--------~--~~~~~~ 249 (282)
.. ....|..+|...+...+. ... +++...+.|+.+..++.. ...... . ......
T Consensus 186 ~~------p~~~~~~sK~~~E~~l~~-----~~~--gl~~tIlRp~~~~~~~~~~~~~~~~g~~~~~~GdG~~~~~~~I~ 252 (390)
T PLN02657 186 QK------PLLEFQRAKLKFEAELQA-----LDS--DFTYSIVRPTAFFKSLGGQVEIVKDGGPYVMFGDGKLCACKPIS 252 (390)
T ss_pred cC------cchHHHHHHHHHHHHHHh-----ccC--CCCEEEEccHHHhcccHHHHHhhccCCceEEecCCcccccCcee
Confidence 32 234577888887766543 123 678888899876544321 111110 1 012356
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
.+|+|..+..++... ...|..+.+-+
T Consensus 253 v~DlA~~i~~~~~~~--~~~~~~~~Igg 278 (390)
T PLN02657 253 EADLASFIADCVLDE--SKINKVLPIGG 278 (390)
T ss_pred HHHHHHHHHHHHhCc--cccCCEEEcCC
Confidence 789999988888642 23456666543
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.3e-13 Score=127.92 Aligned_cols=216 Identities=10% Similarity=0.064 Sum_probs=140.6
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC--CcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP--NGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~--~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+++|+||||||+|.||++++++|+++|..+.|+..+|.. .....+... ....++.++.+|++|.+.+..++..
T Consensus 3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~-- 78 (668)
T PLN02260 3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPS--KSSPNFKFVKGDIASADLVNYLLIT-- 78 (668)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhc--ccCCCeEEEECCCCChHHHHHHHhh--
Confidence 4678999999999999999999999985433488887743 111111111 1124789999999998877665432
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
.++|+|||+|+... .. .........+++|+.++.++++++...- . .+++|++||...
T Consensus 79 ---~~~D~ViHlAa~~~-------~~----~~~~~~~~~~~~Nv~gt~~ll~a~~~~~---~------vkr~I~~SS~~v 135 (668)
T PLN02260 79 ---EGIDTIMHFAAQTH-------VD----NSFGNSFEFTKNNIYGTHVLLEACKVTG---Q------IRRFIHVSTDEV 135 (668)
T ss_pred ---cCCCEEEECCCccC-------ch----hhhhCHHHHHHHHHHHHHHHHHHHHhcC---C------CcEEEEEcchHH
Confidence 36999999999763 11 0011223567899999999998875421 0 138999998642
Q ss_pred cc--C---------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--c--------c--
Q 023441 183 SI--G---------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--F--------Q-- 239 (282)
Q Consensus 183 ~~--~---------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--~--------~-- 239 (282)
.- . ..+......|+.+|.+.+.+.+.+..++ ++.+.++.|+.+..+-... + .
T Consensus 136 yg~~~~~~~~~~~E~~~~~p~~~Y~~sK~~aE~~v~~~~~~~-----~l~~vilR~~~VyGp~~~~~~~i~~~~~~a~~g 210 (668)
T PLN02260 136 YGETDEDADVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSY-----GLPVITTRGNNVYGPNQFPEKLIPKFILLAMQG 210 (668)
T ss_pred hCCCccccccCccccCCCCCCCCcHHHHHHHHHHHHHHHHHc-----CCCEEEECcccccCcCCCcccHHHHHHHHHhCC
Confidence 21 0 0112234579999999999999877764 5677778898776553210 0 0
Q ss_pred cCC-------CCCCCCChHHHHHHHHHHHhhcCCCCCCceeec
Q 023441 240 RNV-------PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 240 ~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~ 275 (282)
... ....+...+++++++..++... ..|..|.+
T Consensus 211 ~~i~i~g~g~~~r~~ihV~Dva~a~~~~l~~~---~~~~vyni 250 (668)
T PLN02260 211 KPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKG---EVGHVYNI 250 (668)
T ss_pred CCeEEecCCCceEeeEEHHHHHHHHHHHHhcC---CCCCEEEE
Confidence 000 0123467899999998887643 23445554
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-12 Score=115.88 Aligned_cols=208 Identities=18% Similarity=0.199 Sum_probs=134.2
Q ss_pred cEEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCC-ChhHHHHHHHHHHHHcC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT-VESTIEASAKSIKEKYG 106 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls-~~~~~~~~~~~~~~~~~ 106 (282)
+++|||||+|.||..++++|++. |.+ |++.+|+..... .... ...+.++.+|++ +.+.+.++++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~--V~~~~r~~~~~~---~~~~--~~~~~~~~~Dl~~~~~~~~~~~~------- 67 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWE--VYGMDMQTDRLG---DLVN--HPRMHFFEGDITINKEWIEYHVK------- 67 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCe--EEEEeCcHHHHH---Hhcc--CCCeEEEeCCCCCCHHHHHHHHc-------
Confidence 47999999999999999999986 566 888888654322 1111 136889999998 5565555443
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc--
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-- 184 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~-- 184 (282)
++|++||+|+... +.. . .++....+++|+.++.++++++... + .++|++||....-
T Consensus 68 ~~d~ViH~aa~~~------~~~-~----~~~p~~~~~~n~~~~~~ll~aa~~~----~-------~~~v~~SS~~vyg~~ 125 (347)
T PRK11908 68 KCDVILPLVAIAT------PAT-Y----VKQPLRVFELDFEANLPIVRSAVKY----G-------KHLVFPSTSEVYGMC 125 (347)
T ss_pred CCCEEEECcccCC------hHH-h----hcCcHHHHHHHHHHHHHHHHHHHhc----C-------CeEEEEecceeeccC
Confidence 5899999999753 111 0 1122356789999999998887642 1 1788888863221
Q ss_pred CC-----C--CC------CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc---------------
Q 023441 185 GD-----N--RL------GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR--------------- 236 (282)
Q Consensus 185 ~~-----~--~~------~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~--------------- 236 (282)
.. . +. .....|+.+|.+.+.+.+.++.+. ++.+..+.|+.+..+...
T Consensus 126 ~~~~~~ee~~~~~~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~ 200 (347)
T PRK11908 126 PDEEFDPEASPLVYGPINKPRWIYACSKQLMDRVIWAYGMEE-----GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQ 200 (347)
T ss_pred CCcCcCccccccccCcCCCccchHHHHHHHHHHHHHHHHHHc-----CCCeEEEeeeeeeCCCccCCCccccCCcchHHH
Confidence 10 0 00 122369999999999988877654 455666677666444211
Q ss_pred ---ccccC---------CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 237 ---PFQRN---------VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 237 ---~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
..... .....+...+++++.++.++........|..|.+.+
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~~~~~~~~~~g~~yni~~ 253 (347)
T PRK11908 201 FLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKIIENKDGVASGKIYNIGN 253 (347)
T ss_pred HHHHHhCCCceEEecCCceeeccccHHHHHHHHHHHHhCccccCCCCeEEeCC
Confidence 00000 112246789999999999887532223466666544
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.9e-13 Score=118.25 Aligned_cols=202 Identities=13% Similarity=0.077 Sum_probs=134.7
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..|--+++++|||||+|.||.+++++|.++|.+ |+.++|...... .. ......++.+|++|.+.+.+++.
T Consensus 15 ~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~--V~~v~r~~~~~~--~~----~~~~~~~~~~Dl~d~~~~~~~~~-- 84 (370)
T PLN02695 15 PYWPSEKLRICITGAGGFIASHIARRLKAEGHY--IIASDWKKNEHM--SE----DMFCHEFHLVDLRVMENCLKVTK-- 84 (370)
T ss_pred CCCCCCCCEEEEECCccHHHHHHHHHHHhCCCE--EEEEEecccccc--cc----ccccceEEECCCCCHHHHHHHHh--
Confidence 344557899999999999999999999999987 888888643211 00 01135678899999887766653
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
++|++||+|+... ...... ......+..|+.++.++++++... +- +++|++||..
T Consensus 85 -----~~D~Vih~Aa~~~-------~~~~~~---~~~~~~~~~N~~~t~nll~aa~~~----~v------k~~V~~SS~~ 139 (370)
T PLN02695 85 -----GVDHVFNLAADMG-------GMGFIQ---SNHSVIMYNNTMISFNMLEAARIN----GV------KRFFYASSAC 139 (370)
T ss_pred -----CCCEEEEcccccC-------Cccccc---cCchhhHHHHHHHHHHHHHHHHHh----CC------CEEEEeCchh
Confidence 5899999998653 111100 112234678999999999987542 11 2788888853
Q ss_pred --cccC----------CC--CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc----------c
Q 023441 182 --GSIG----------DN--RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR----------P 237 (282)
Q Consensus 182 --~~~~----------~~--~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~----------~ 237 (282)
+... +. +......|+.+|.+.+.+++.++..+ ++.+..+.|+.+..+-.. .
T Consensus 140 vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg~sK~~~E~~~~~~~~~~-----g~~~~ilR~~~vyGp~~~~~~~~~~~~~~ 214 (370)
T PLN02695 140 IYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDF-----GIECRIGRFHNIYGPFGTWKGGREKAPAA 214 (370)
T ss_pred hcCCccccCcCCCcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh-----CCCEEEEEECCccCCCCCccccccccHHH
Confidence 2110 11 23345689999999999998877664 677888889887766321 0
Q ss_pred cc-------cCC-------CCCCCCChHHHHHHHHHHHhh
Q 023441 238 FQ-------RNV-------PEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 238 ~~-------~~~-------~~~~~~~~~~~a~~~~~~~~~ 263 (282)
+. ... ....+...+++++.++.++..
T Consensus 215 ~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~~~~~ 254 (370)
T PLN02695 215 FCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLRLTKS 254 (370)
T ss_pred HHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHHHHhc
Confidence 00 000 012346789999998887764
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-12 Score=108.05 Aligned_cols=152 Identities=18% Similarity=0.163 Sum_probs=114.2
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
.++|||||+|=||.+++.+|++.|.+ |++.+.-........... .+.|++.|+.|.+.+.+++++- +|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~--vvV~DNL~~g~~~~v~~~-----~~~f~~gDi~D~~~L~~vf~~~-----~i 68 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHE--VVVLDNLSNGHKIALLKL-----QFKFYEGDLLDRALLTAVFEEN-----KI 68 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCe--EEEEecCCCCCHHHhhhc-----cCceEEeccccHHHHHHHHHhc-----CC
Confidence 47999999999999999999999998 888777665543322221 1789999999999999988874 89
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC--
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD-- 186 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~-- 186 (282)
|.++|-||... -+ .+-+.-.+-++.|+.+++.+++++...-.+ .+|+.||.. ..+.
T Consensus 69 daViHFAa~~~-------Vg----ESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~----------~~vFSStAa-vYG~p~ 126 (329)
T COG1087 69 DAVVHFAASIS-------VG----ESVQNPLKYYDNNVVGTLNLIEAMLQTGVK----------KFIFSSTAA-VYGEPT 126 (329)
T ss_pred CEEEECccccc-------cc----hhhhCHHHHHhhchHhHHHHHHHHHHhCCC----------EEEEecchh-hcCCCC
Confidence 99999999864 11 112334466889999999999997765432 677666643 3332
Q ss_pred -------CCCCCcccchhhHHHHHHHHHHHHHHhc
Q 023441 187 -------NRLGGWHSYRASKAALNQLTKSVSVEFG 214 (282)
Q Consensus 187 -------~~~~~~~~Y~~sKa~~~~l~~~la~e~~ 214 (282)
.+.....+|+.||...+.+.+.++....
T Consensus 127 ~~PI~E~~~~~p~NPYG~sKlm~E~iL~d~~~a~~ 161 (329)
T COG1087 127 TSPISETSPLAPINPYGRSKLMSEEILRDAAKANP 161 (329)
T ss_pred CcccCCCCCCCCCCcchhHHHHHHHHHHHHHHhCC
Confidence 2344557899999999999999988764
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.6e-13 Score=115.62 Aligned_cols=192 Identities=15% Similarity=0.067 Sum_probs=124.2
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH--HcCCc
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE--KYGSL 108 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~--~~~~i 108 (282)
+|||||+|.||++++++|+++|.+ ++++.|+....... ..+..+|++|..+...+++.+.+ .++++
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~--~v~~~~~~~~~~~~----------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 69 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKF----------VNLVDLDIADYMDKEDFLAQIMAGDDFGDI 69 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCc--eEEEecCCCcchHH----------HhhhhhhhhhhhhHHHHHHHHhcccccCCc
Confidence 799999999999999999999986 56555554332110 12345678777666666665543 34579
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC--
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD-- 186 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~-- 186 (282)
|++||+|+... .. ...+ ...++.|+.++.++++.+... + .++|++||....-..
T Consensus 70 d~Vih~A~~~~-------~~---~~~~---~~~~~~n~~~t~~ll~~~~~~----~-------~~~i~~SS~~vyg~~~~ 125 (308)
T PRK11150 70 EAIFHEGACSS-------TT---EWDG---KYMMDNNYQYSKELLHYCLER----E-------IPFLYASSAATYGGRTD 125 (308)
T ss_pred cEEEECceecC-------Cc---CCCh---HHHHHHHHHHHHHHHHHHHHc----C-------CcEEEEcchHHhCcCCC
Confidence 99999999653 11 1111 246889999999999987542 1 158888886432111
Q ss_pred ------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc--------------ccccCC-C--
Q 023441 187 ------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR--------------PFQRNV-P-- 243 (282)
Q Consensus 187 ------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~--------------~~~~~~-~-- 243 (282)
.+..+...|+.+|.+.+.+.+.+..+. ++.+..+.|+.+..+... ...... +
T Consensus 126 ~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i 200 (308)
T PRK11150 126 DFIEEREYEKPLNVYGYSKFLFDEYVRQILPEA-----NSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKL 200 (308)
T ss_pred CCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHc-----CCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEE
Confidence 112234579999999999888776553 566777788776554211 011110 0
Q ss_pred -------CCCCCChHHHHHHHHHHHhh
Q 023441 244 -------EGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 244 -------~~~~~~~~~~a~~~~~~~~~ 263 (282)
...+...++++++++.++..
T Consensus 201 ~~g~~~~~r~~i~v~D~a~a~~~~~~~ 227 (308)
T PRK11150 201 FEGSENFKRDFVYVGDVAAVNLWFWEN 227 (308)
T ss_pred ecCCCceeeeeeeHHHHHHHHHHHHhc
Confidence 12346889999998888764
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.7e-12 Score=116.58 Aligned_cols=214 Identities=13% Similarity=0.200 Sum_probs=137.4
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCC-cEEEEeecCCCcccccc----cc-----c----ccC--------CCceeE
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDK-GCVIATCRNPNGATGLL----DL-----K----NRF--------PERLDV 83 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~-~~vi~~~r~~~~~~~~~----~~-----~----~~~--------~~~v~~ 83 (282)
++||+++||||||.||..+++.|++.+.+ .+|+++.|......... +. . ... ..++++
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~ 88 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP 88 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence 78999999999999999999999987644 25888888765322111 10 0 001 157999
Q ss_pred EEeeCCCh-------hHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHh
Q 023441 84 LQLDLTVE-------STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHM 156 (282)
Q Consensus 84 ~~~Dls~~-------~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~ 156 (282)
+..|++++ +.++++++ .+|++||+|+... . .+..+..+.+|+.++.++++++
T Consensus 89 i~GDl~~~~LGLs~~~~~~~l~~-------~vD~ViH~AA~v~-------~-------~~~~~~~~~~Nv~gt~~ll~~a 147 (491)
T PLN02996 89 VPGDISYDDLGVKDSNLREEMWK-------EIDIVVNLAATTN-------F-------DERYDVALGINTLGALNVLNFA 147 (491)
T ss_pred EecccCCcCCCCChHHHHHHHHh-------CCCEEEECccccC-------C-------cCCHHHHHHHHHHHHHHHHHHH
Confidence 99999843 33444433 5899999999763 1 1234567899999999999987
Q ss_pred hhhhhcCCCCCccceeEEEEeeccccccCC------CCC-----------------------------------------
Q 023441 157 SPLLKVGGTGIERDVAVVANLSARVGSIGD------NRL----------------------------------------- 189 (282)
Q Consensus 157 ~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~------~~~----------------------------------------- 189 (282)
...-. - .+++++||.+..-.. .++
T Consensus 148 ~~~~~---~------k~~V~vST~~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
T PLN02996 148 KKCVK---V------KMLLHVSTAYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQA 218 (491)
T ss_pred HhcCC---C------CeEEEEeeeEEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 65311 0 267788876532110 000
Q ss_pred ------------CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCC---------------
Q 023441 190 ------------GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNV--------------- 242 (282)
Q Consensus 190 ------------~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~--------------- 242 (282)
+....|+.||+..+.+++..+. ++.+..+.|..|..+...++....
T Consensus 219 ~~~~~~~~~~~~~~pn~Y~~TK~~aE~lv~~~~~-------~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~ 291 (491)
T PLN02996 219 MKDLGMERAKLHGWPNTYVFTKAMGEMLLGNFKE-------NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGK 291 (491)
T ss_pred hhhhchhHHHhCCCCCchHhhHHHHHHHHHHhcC-------CCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhcc
Confidence 0113599999999998865421 577888899888665433321110
Q ss_pred -----------CCCCCCChHHHHHHHHHHHhhcC-CCCCCceeecC
Q 023441 243 -----------PEGKLFTKEFSVQKLLNIINNIK-SHDNGKFFAWD 276 (282)
Q Consensus 243 -----------~~~~~~~~~~~a~~~~~~~~~~~-~~~~g~~~~~d 276 (282)
......+.++++++++.++.... ....+..+.+-
T Consensus 292 g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~~~~~~~~~~~vYNi~ 337 (491)
T PLN02996 292 GKLTCFLADPNSVLDVIPADMVVNAMIVAMAAHAGGQGSEIIYHVG 337 (491)
T ss_pred ceEeEEecCCCeecceecccHHHHHHHHHHHHhhccCCCCcEEEec
Confidence 11344577999999988876531 11234556553
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-11 Score=107.66 Aligned_cols=191 Identities=19% Similarity=0.213 Sum_probs=127.1
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++|||||+|.||.+++++|.++|.+ |++.+|. .+|+.+.++++++++.. ++|
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~--v~~~~r~---------------------~~d~~~~~~~~~~~~~~-----~~d 52 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRV--VVALTSS---------------------QLDLTDPEALERLLRAI-----RPD 52 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCE--EEEeCCc---------------------ccCCCCHHHHHHHHHhC-----CCC
Confidence 4799999999999999999999987 8888774 37999999998887753 689
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC----
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG---- 185 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~---- 185 (282)
++||++|... .. ......+..+++|+.++.++++++... + .++|++||.+...+
T Consensus 53 ~vi~~a~~~~-------~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-------~~~v~~Ss~~vy~~~~~~ 110 (287)
T TIGR01214 53 AVVNTAAYTD-------VD----GAESDPEKAFAVNALAPQNLARAAARH----G-------ARLVHISTDYVFDGEGKR 110 (287)
T ss_pred EEEECCcccc-------cc----ccccCHHHHHHHHHHHHHHHHHHHHHc----C-------CeEEEEeeeeeecCCCCC
Confidence 9999999753 11 011234567889999999999987542 1 16788888543211
Q ss_pred ----CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc-c----c----ccCC-------CCC
Q 023441 186 ----DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR-P----F----QRNV-------PEG 245 (282)
Q Consensus 186 ----~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~-~----~----~~~~-------~~~ 245 (282)
..+......|+.+|...+.+.+.+ +..+..+.|+.+..+... . + .... ...
T Consensus 111 ~~~E~~~~~~~~~Y~~~K~~~E~~~~~~---------~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (287)
T TIGR01214 111 PYREDDATNPLNVYGQSKLAGEQAIRAA---------GPNALIVRTSWLYGGGGGRNFVRTMLRLAGRGEELRVVDDQIG 181 (287)
T ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHh---------CCCeEEEEeeecccCCCCCCHHHHHHHHhhcCCCceEecCCCc
Confidence 111223467999999998887754 134566788887654321 1 0 0000 012
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.....+++++++..++... ...+|.+...+++.+
T Consensus 182 ~~v~v~Dva~a~~~~~~~~-~~~~~~~ni~~~~~~ 215 (287)
T TIGR01214 182 SPTYAKDLARVIAALLQRL-ARARGVYHLANSGQC 215 (287)
T ss_pred CCcCHHHHHHHHHHHHhhc-cCCCCeEEEECCCCc
Confidence 3346789999999988653 123454444444444
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.3e-12 Score=111.20 Aligned_cols=191 Identities=17% Similarity=0.139 Sum_probs=125.4
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
+++||||||.||.+++++|+++|++ |.+.+|+..+..... ...+.++.+|++|++++.++++ .+|
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~--V~~l~R~~~~~~~l~------~~~v~~v~~Dl~d~~~l~~al~-------g~d 66 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQ--VRCLVRNLRKASFLK------EWGAELVYGDLSLPETLPPSFK-------GVT 66 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCe--EEEEEcChHHhhhHh------hcCCEEEECCCCCHHHHHHHHC-------CCC
Confidence 6999999999999999999999987 999999865432111 1258899999999998877765 589
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCC
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRL 189 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~ 189 (282)
++||+++... . ......++|..++.++++++...-. .++|++||..... .
T Consensus 67 ~Vi~~~~~~~-------~---------~~~~~~~~~~~~~~~l~~aa~~~gv----------kr~I~~Ss~~~~~----~ 116 (317)
T CHL00194 67 AIIDASTSRP-------S---------DLYNAKQIDWDGKLALIEAAKAAKI----------KRFIFFSILNAEQ----Y 116 (317)
T ss_pred EEEECCCCCC-------C---------CccchhhhhHHHHHHHHHHHHHcCC----------CEEEEeccccccc----c
Confidence 9999876431 1 1123466788888888888764321 2788888854321 1
Q ss_pred CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----cc--------CCCCCCCCChHHHHHHH
Q 023441 190 GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----QR--------NVPEGKLFTKEFSVQKL 257 (282)
Q Consensus 190 ~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----~~--------~~~~~~~~~~~~~a~~~ 257 (282)
+...|..+|...+.+.+ + . ++....+.|+.+...+...+ .. ..........+++|+.+
T Consensus 117 -~~~~~~~~K~~~e~~l~----~---~--~l~~tilRp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~ 186 (317)
T CHL00194 117 -PYIPLMKLKSDIEQKLK----K---S--GIPYTIFRLAGFFQGLISQYAIPILEKQPIWITNESTPISYIDTQDAAKFC 186 (317)
T ss_pred -CCChHHHHHHHHHHHHH----H---c--CCCeEEEeecHHhhhhhhhhhhhhccCCceEecCCCCccCccCHHHHHHHH
Confidence 12457788887766543 2 2 56666678875433321110 00 01112335679999999
Q ss_pred HHHHhhcCCCCCCceeecCC
Q 023441 258 LNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 258 ~~~~~~~~~~~~g~~~~~d~ 277 (282)
..++... ...|..|.+-+
T Consensus 187 ~~~l~~~--~~~~~~~ni~g 204 (317)
T CHL00194 187 LKSLSLP--ETKNKTFPLVG 204 (317)
T ss_pred HHHhcCc--cccCcEEEecC
Confidence 9888643 22466666544
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.2e-12 Score=110.58 Aligned_cols=196 Identities=21% Similarity=0.221 Sum_probs=133.6
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
.+|||||+|.||.+++++|.++|.+ |+..+|......... ..+.++.+|++|.+...+++... + |
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~-----~-d 66 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHD--VRGLDRLRDGLDPLL-------SGVEFVVLDLTDRDLVDELAKGV-----P-D 66 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCe--EEEEeCCCccccccc-------cccceeeecccchHHHHHHHhcC-----C-C
Confidence 3999999999999999999999988 999999887654322 46889999999985555554421 1 9
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC---
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD--- 186 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~--- 186 (282)
.+||+++... .. .... . .....+.+|+.++.++++++... +. .++|+.||.+.....
T Consensus 67 ~vih~aa~~~-------~~-~~~~-~-~~~~~~~~nv~gt~~ll~aa~~~----~~------~~~v~~ss~~~~~~~~~~ 126 (314)
T COG0451 67 AVIHLAAQSS-------VP-DSNA-S-DPAEFLDVNVDGTLNLLEAARAA----GV------KRFVFASSVSVVYGDPPP 126 (314)
T ss_pred EEEEccccCc-------hh-hhhh-h-CHHHHHHHHHHHHHHHHHHHHHc----CC------CeEEEeCCCceECCCCCC
Confidence 9999999874 11 1111 1 33457899999999999998761 11 277776664432211
Q ss_pred ----C---CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------ccCCC--C
Q 023441 187 ----N---RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------QRNVP--E 244 (282)
Q Consensus 187 ----~---~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------~~~~~--~ 244 (282)
+ +......|+.+|...+.+++....+. ++.+..+.|+.+..+..... ....+ .
T Consensus 127 ~~~~E~~~~~~p~~~Yg~sK~~~E~~~~~~~~~~-----~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (314)
T COG0451 127 LPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLY-----GLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIV 201 (314)
T ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----CCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcce
Confidence 1 11111259999999999999888832 67788888887754432210 11111 0
Q ss_pred --------CCCCChHHHHHHHHHHHhhcC
Q 023441 245 --------GKLFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 245 --------~~~~~~~~~a~~~~~~~~~~~ 265 (282)
......+++++.+..+++...
T Consensus 202 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 230 (314)
T COG0451 202 IGGDGSQTRDFVYVDDVADALLLALENPD 230 (314)
T ss_pred EeCCCceeEeeEeHHHHHHHHHHHHhCCC
Confidence 124568899999999988654
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.6e-12 Score=109.36 Aligned_cols=195 Identities=15% Similarity=0.078 Sum_probs=124.3
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccE
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNL 110 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~ 110 (282)
+|||||+|.||.+++++|.++|.. .|++++|..... ..... ....+..|+++.+.++.+.+. .+.++|+
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~-~v~~~~~~~~~~-~~~~~------~~~~~~~d~~~~~~~~~~~~~---~~~~~D~ 69 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT-DILVVDNLRDGH-KFLNL------ADLVIADYIDKEDFLDRLEKG---AFGKIEA 69 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc-eEEEEecCCCch-hhhhh------hheeeeccCcchhHHHHHHhh---ccCCCCE
Confidence 589999999999999999999973 277776654321 11111 113567788887776665553 3457999
Q ss_pred EEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC-----
Q 023441 111 LINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG----- 185 (282)
Q Consensus 111 lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~----- 185 (282)
+||+|+... .. .++....+++|+.++.++++++... + .++|++||.+..-.
T Consensus 70 vvh~A~~~~-------~~------~~~~~~~~~~n~~~~~~ll~~~~~~----~-------~~~v~~SS~~vy~~~~~~~ 125 (314)
T TIGR02197 70 IFHQGACSD-------TT------ETDGEYMMENNYQYSKRLLDWCAEK----G-------IPFIYASSAATYGDGEAGF 125 (314)
T ss_pred EEECccccC-------cc------ccchHHHHHHHHHHHHHHHHHHHHh----C-------CcEEEEccHHhcCCCCCCc
Confidence 999999642 11 1234567899999999999987642 1 16888888543210
Q ss_pred --CCC-CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc--------------ccccC--C----
Q 023441 186 --DNR-LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR--------------PFQRN--V---- 242 (282)
Q Consensus 186 --~~~-~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~--------------~~~~~--~---- 242 (282)
+.+ ......|+.+|...+.+++....+.. .++.+..+.|+.+..+-.. ..... .
T Consensus 126 ~e~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~---~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (314)
T TIGR02197 126 REGRELERPLNVYGYSKFLFDQYVRRRVLPEA---LSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFK 202 (314)
T ss_pred ccccCcCCCCCHHHHHHHHHHHHHHHHhHhhc---cCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEec
Confidence 111 12456799999999998876432211 1456666677666444211 00000 0
Q ss_pred ---------CCCCCCChHHHHHHHHHHHhh
Q 023441 243 ---------PEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 243 ---------~~~~~~~~~~~a~~~~~~~~~ 263 (282)
....+...+++++.++.++..
T Consensus 203 ~~~~~~~g~~~~~~i~v~D~a~~i~~~~~~ 232 (314)
T TIGR02197 203 SSEGFKDGEQLRDFVYVKDVVDVNLWLLEN 232 (314)
T ss_pred CccccCCCCceeeeEEHHHHHHHHHHHHhc
Confidence 012356789999999988875
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.43 E-value=8e-12 Score=109.18 Aligned_cols=180 Identities=13% Similarity=0.023 Sum_probs=121.3
Q ss_pred EEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccEE
Q 023441 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLL 111 (282)
Q Consensus 32 lItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~l 111 (282)
|||||+|.||..++++|.++|.. |++..+. ..+|++|.+++.++++.. ++|++
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~--v~~~~~~--------------------~~~Dl~~~~~l~~~~~~~-----~~d~V 53 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFT--NLVLRTH--------------------KELDLTRQADVEAFFAKE-----KPTYV 53 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCc--EEEeecc--------------------ccCCCCCHHHHHHHHhcc-----CCCEE
Confidence 69999999999999999999987 5544321 137999999888877752 58999
Q ss_pred EECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC--C--
Q 023441 112 INASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD--N-- 187 (282)
Q Consensus 112 v~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~--~-- 187 (282)
||+|+... ..... .......+++|+.++.++++.+...-. .++|++||....-.. .
T Consensus 54 ih~A~~~~-------~~~~~---~~~~~~~~~~n~~~~~~ll~~~~~~~~----------~~~i~~SS~~vyg~~~~~~~ 113 (306)
T PLN02725 54 ILAAAKVG-------GIHAN---MTYPADFIRENLQIQTNVIDAAYRHGV----------KKLLFLGSSCIYPKFAPQPI 113 (306)
T ss_pred EEeeeeec-------ccchh---hhCcHHHHHHHhHHHHHHHHHHHHcCC----------CeEEEeCceeecCCCCCCCC
Confidence 99999742 10000 112235678899999999998875321 278888885432110 0
Q ss_pred --------CC-CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc--------------cc----c-
Q 023441 188 --------RL-GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR--------------PF----Q- 239 (282)
Q Consensus 188 --------~~-~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~--------------~~----~- 239 (282)
+. +....|+.+|.+.+.+.+.+..+. ++++..+.|+.+..+... .+ .
T Consensus 114 ~E~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~ 188 (306)
T PLN02725 114 PETALLTGPPEPTNEWYAIAKIAGIKMCQAYRIQY-----GWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKAN 188 (306)
T ss_pred CHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHh-----CCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhc
Confidence 11 112359999999998888777665 577788899887655311 00 0
Q ss_pred ---------cCCCCCCCCChHHHHHHHHHHHhh
Q 023441 240 ---------RNVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 240 ---------~~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
.......+...+++++.++.++..
T Consensus 189 ~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~~~ 221 (306)
T PLN02725 189 GAPEVVVWGSGSPLREFLHVDDLADAVVFLMRR 221 (306)
T ss_pred CCCeEEEcCCCCeeeccccHHHHHHHHHHHHhc
Confidence 001122557889999999998874
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=113.19 Aligned_cols=194 Identities=15% Similarity=0.118 Sum_probs=126.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
+++++|||||+|.||..++++|+++|++ |++++|....... ...... ..++.++..|+.+.. +
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~--V~~ld~~~~~~~~~~~~~~~--~~~~~~i~~D~~~~~-----l------- 181 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDS--VIVVDNFFTGRKENVMHHFS--NPNFELIRHDVVEPI-----L------- 181 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCE--EEEEeCCCccchhhhhhhcc--CCceEEEECCccChh-----h-------
Confidence 5689999999999999999999999988 8888775433221 111111 236788889987652 1
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
..+|+|||+|+... .... . ....+.+++|+.++.++++++... + .++|++||......
T Consensus 182 ~~~D~ViHlAa~~~-------~~~~-~---~~p~~~~~~Nv~gt~nLleaa~~~----g-------~r~V~~SS~~VYg~ 239 (442)
T PLN02206 182 LEVDQIYHLACPAS-------PVHY-K---FNPVKTIKTNVVGTLNMLGLAKRV----G-------ARFLLTSTSEVYGD 239 (442)
T ss_pred cCCCEEEEeeeecc-------hhhh-h---cCHHHHHHHHHHHHHHHHHHHHHh----C-------CEEEEECChHHhCC
Confidence 15899999998753 1110 1 123467899999999999987643 1 16888888643211
Q ss_pred C-------------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCC------------ccccc
Q 023441 186 D-------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS------------RPFQR 240 (282)
Q Consensus 186 ~-------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~------------~~~~~ 240 (282)
. .+......|+.+|.+.+.+++.+.++. ++.+..+.|+.+..+.. .....
T Consensus 240 ~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~aE~~~~~y~~~~-----g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~ 314 (442)
T PLN02206 240 PLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA-----NVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALR 314 (442)
T ss_pred CCCCCCCccccccCCCCCccchHHHHHHHHHHHHHHHHHHh-----CCCeEEEEeccccCCCCCccccchHHHHHHHHHc
Confidence 0 122234679999999999988876654 56666667765544321 00000
Q ss_pred CCC---------CCCCCChHHHHHHHHHHHhh
Q 023441 241 NVP---------EGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 241 ~~~---------~~~~~~~~~~a~~~~~~~~~ 263 (282)
..+ ...+...+|+++.++.++..
T Consensus 315 ~~~i~i~g~G~~~rdfi~V~Dva~ai~~a~e~ 346 (442)
T PLN02206 315 KEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 346 (442)
T ss_pred CCCcEEeCCCCEEEeEEeHHHHHHHHHHHHhc
Confidence 000 12346789999999888763
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-11 Score=110.93 Aligned_cols=194 Identities=15% Similarity=0.100 Sum_probs=126.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
+.++++||||+|.||..++++|+++|++ |++++|....... ...... ..++.++..|+.+.. +
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~--V~~ldr~~~~~~~~~~~~~~--~~~~~~~~~Di~~~~-----~------- 182 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGDE--VIVIDNFFTGRKENLVHLFG--NPRFELIRHDVVEPI-----L------- 182 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCE--EEEEeCCCCccHhHhhhhcc--CCceEEEECcccccc-----c-------
Confidence 3468999999999999999999999988 8888886433221 111111 136788888987642 1
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
.++|+|||+|+... .... . .+-...+.+|+.++.++++++...- .++|++||....-.
T Consensus 183 ~~~D~ViHlAa~~~-------~~~~-~---~~p~~~~~~Nv~gT~nLleaa~~~g-----------~r~V~~SS~~VYg~ 240 (436)
T PLN02166 183 LEVDQIYHLACPAS-------PVHY-K---YNPVKTIKTNVMGTLNMLGLAKRVG-----------ARFLLTSTSEVYGD 240 (436)
T ss_pred cCCCEEEECceecc-------chhh-c---cCHHHHHHHHHHHHHHHHHHHHHhC-----------CEEEEECcHHHhCC
Confidence 25899999998753 1111 1 1224678899999999998886531 16778877542210
Q ss_pred -------C------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc----c--------ccc
Q 023441 186 -------D------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR----P--------FQR 240 (282)
Q Consensus 186 -------~------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~----~--------~~~ 240 (282)
. .+......|+.+|.+.+.+++.+.+.. ++.+..+.|+.+..+-.. . ...
T Consensus 241 ~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~aE~~~~~y~~~~-----~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~ 315 (436)
T PLN02166 241 PLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGA-----GVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIR 315 (436)
T ss_pred CCCCCCCccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh-----CCCeEEEEEccccCCCCCCCccchHHHHHHHHhc
Confidence 0 122234579999999999998877654 456666677666544210 0 000
Q ss_pred CCC---------CCCCCChHHHHHHHHHHHhh
Q 023441 241 NVP---------EGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 241 ~~~---------~~~~~~~~~~a~~~~~~~~~ 263 (282)
..+ ...+...+|+++++..++..
T Consensus 316 ~~~i~v~g~g~~~rdfi~V~Dva~ai~~~~~~ 347 (436)
T PLN02166 316 KQPMTVYGDGKQTRSFQYVSDLVDGLVALMEG 347 (436)
T ss_pred CCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhc
Confidence 001 12356789999999888863
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=105.58 Aligned_cols=164 Identities=15% Similarity=0.191 Sum_probs=99.6
Q ss_pred EecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc---ccccccccC----------CCceeEEEeeCCChh------H
Q 023441 33 VQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT---GLLDLKNRF----------PERLDVLQLDLTVES------T 93 (282)
Q Consensus 33 ItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~---~~~~~~~~~----------~~~v~~~~~Dls~~~------~ 93 (282)
||||||.||..+.++|++++....|+.+.|...... .+.+.+.++ .++++++..|++++. +
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999987335999999875422 222222211 469999999999864 3
Q ss_pred HHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeE
Q 023441 94 IEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAV 173 (282)
Q Consensus 94 ~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~ 173 (282)
...+.+ .+|++||||+... .. ...++..++|+.|+.++++.+...-. ..
T Consensus 81 ~~~L~~-------~v~~IiH~Aa~v~-------~~-------~~~~~~~~~NV~gt~~ll~la~~~~~----------~~ 129 (249)
T PF07993_consen 81 YQELAE-------EVDVIIHCAASVN-------FN-------APYSELRAVNVDGTRNLLRLAAQGKR----------KR 129 (249)
T ss_dssp HHHHHH-------H--EEEE--SS-S-------BS--------S--EEHHHHHHHHHHHHHHHTSSS-------------
T ss_pred hhcccc-------ccceeeecchhhh-------hc-------ccchhhhhhHHHHHHHHHHHHHhccC----------cc
Confidence 333322 5899999999874 11 13445688999999999999874221 27
Q ss_pred EEEeeccccc--cCC---------------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccC
Q 023441 174 VANLSARVGS--IGD---------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDT 232 (282)
Q Consensus 174 iv~~ss~~~~--~~~---------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t 232 (282)
++++||.+.. ... ........|..||...+.+.+..+.+. ++.+..+.||.+-.
T Consensus 130 ~~~iSTa~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~-----g~p~~I~Rp~~i~g 200 (249)
T PF07993_consen 130 FHYISTAYVAGSRPGTIEEKVYPEEEDDLDPPQGFPNGYEQSKWVAERLLREAAQRH-----GLPVTIYRPGIIVG 200 (249)
T ss_dssp EEEEEEGGGTTS-TTT--SSS-HHH--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH--------EEEEEE-EEE-
T ss_pred eEEeccccccCCCCCcccccccccccccchhhccCCccHHHHHHHHHHHHHHHHhcC-----CceEEEEecCcccc
Confidence 8888883221 110 011233579999999999999888764 57778889999866
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=107.57 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=95.6
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++|||||+|.||.+++++|.++| + |+.++|... .+..|++|.+.++++++.. ++|
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g-~--V~~~~~~~~-----------------~~~~Dl~d~~~~~~~~~~~-----~~D 56 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG-N--LIALDVHST-----------------DYCGDFSNPEGVAETVRKI-----RPD 56 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC-C--EEEeccccc-----------------cccCCCCCHHHHHHHHHhc-----CCC
Confidence 69999999999999999999999 6 777776431 2347999999998887753 689
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC----
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG---- 185 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~---- 185 (282)
++||+|+... .. .. ...-+..+.+|+.++.++++++...- .++|++||...+-+
T Consensus 57 ~Vih~Aa~~~-------~~-~~---~~~~~~~~~~N~~~~~~l~~aa~~~g-----------~~~v~~Ss~~Vy~~~~~~ 114 (299)
T PRK09987 57 VIVNAAAHTA-------VD-KA---ESEPEFAQLLNATSVEAIAKAANEVG-----------AWVVHYSTDYVFPGTGDI 114 (299)
T ss_pred EEEECCccCC-------cc-hh---hcCHHHHHHHHHHHHHHHHHHHHHcC-----------CeEEEEccceEECCCCCC
Confidence 9999999763 11 00 11223557799999999999876531 16888888542211
Q ss_pred ----CCCCCCcccchhhHHHHHHHHHHH
Q 023441 186 ----DNRLGGWHSYRASKAALNQLTKSV 209 (282)
Q Consensus 186 ----~~~~~~~~~Y~~sKa~~~~l~~~l 209 (282)
..+..+...|+.+|...+.+++..
T Consensus 115 p~~E~~~~~P~~~Yg~sK~~~E~~~~~~ 142 (299)
T PRK09987 115 PWQETDATAPLNVYGETKLAGEKALQEH 142 (299)
T ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 112234457999999999887654
|
|
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-11 Score=104.43 Aligned_cols=193 Identities=17% Similarity=0.174 Sum_probs=146.0
Q ss_pred CcEEEEecC-CCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 28 GGVSLVQGA-SRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 28 gk~vlItGa-s~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
..+|+|.|. +..|++.+|..|-++|+- |++++.+.++.+.++.+. ...+..+..|..++.++...+.+..+.+.
T Consensus 3 ~evVvI~Gs~~~PltR~la~DLeRRGFI--V~v~~~~~ed~~~ve~e~---~~dI~~L~ld~~~~~~~~~~l~~f~~~L~ 77 (299)
T PF08643_consen 3 KEVVVIAGSPHDPLTRSLALDLERRGFI--VYVTVSSAEDEKYVESED---RPDIRPLWLDDSDPSSIHASLSRFASLLS 77 (299)
T ss_pred eeEEEEECCCCCccHHHHHHHHhhCCeE--EEEEeCCHHHHHHHHhcc---CCCCCCcccCCCCCcchHHHHHHHHHHhc
Confidence 468999996 899999999999999976 898888887765544443 24588899999888888888888777664
Q ss_pred Cc--------cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 107 SL--------NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 107 ~i--------d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
.. -+..+-.|+...|...-+.+++.+++.+.|.+.++.|+...+.+++.++|.+..+.. .+...|++.-
T Consensus 78 ~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~~---~~~~iil~~P 154 (299)
T PF08643_consen 78 RPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRSN---QKSKIILFNP 154 (299)
T ss_pred CCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCceEEEEeC
Confidence 22 111122222222222235788899999999999999999999999999999987220 0012444444
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~ 233 (282)
|..+... .+.++.-.....++.+|+++|++|+.++ +|.|..+..|.++-.
T Consensus 155 si~ssl~---~PfhspE~~~~~al~~~~~~LrrEl~~~--~I~V~~i~LG~l~i~ 204 (299)
T PF08643_consen 155 SISSSLN---PPFHSPESIVSSALSSFFTSLRRELRPH--NIDVTQIKLGNLDIG 204 (299)
T ss_pred chhhccC---CCccCHHHHHHHHHHHHHHHHHHHhhhc--CCceEEEEeeeeccc
Confidence 5555555 6778889999999999999999999988 889999999998766
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.9e-11 Score=95.93 Aligned_cols=172 Identities=21% Similarity=0.267 Sum_probs=116.4
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccE
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNL 110 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~ 110 (282)
|+|+||||.+|+.++++|+++|.+ |++..|++++.+. ..+++++++|+.|++++.+++. +.|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~--V~~~~R~~~~~~~--------~~~~~~~~~d~~d~~~~~~al~-------~~d~ 63 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHE--VTALVRSPSKAED--------SPGVEIIQGDLFDPDSVKAALK-------GADA 63 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSE--EEEEESSGGGHHH--------CTTEEEEESCTTCHHHHHHHHT-------TSSE
T ss_pred eEEECCCChHHHHHHHHHHHCCCE--EEEEecCchhccc--------ccccccceeeehhhhhhhhhhh-------hcch
Confidence 689999999999999999999977 9999999886554 4689999999999988887776 6899
Q ss_pred EEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC--
Q 023441 111 LINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR-- 188 (282)
Q Consensus 111 lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~-- 188 (282)
+|+++|... . + ....+.+...+++.+. .+++.+|+.........
T Consensus 64 vi~~~~~~~-------~--------~-------------~~~~~~~~~a~~~~~~------~~~v~~s~~~~~~~~~~~~ 109 (183)
T PF13460_consen 64 VIHAAGPPP-------K--------D-------------VDAAKNIIEAAKKAGV------KRVVYLSSAGVYRDPPGLF 109 (183)
T ss_dssp EEECCHSTT-------T--------H-------------HHHHHHHHHHHHHTTS------SEEEEEEETTGTTTCTSEE
T ss_pred hhhhhhhhc-------c--------c-------------cccccccccccccccc------ccceeeeccccCCCCCccc
Confidence 999998653 1 0 2233344444444332 28888888775543111
Q ss_pred ----CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--c--CCCCCCCCChHHHHHHHHHH
Q 023441 189 ----LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--R--NVPEGKLFTKEFSVQKLLNI 260 (282)
Q Consensus 189 ----~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--~--~~~~~~~~~~~~~a~~~~~~ 260 (282)
.+....|...|...+.+. ... +++...++|+++..+...... . ........+.+++|+.++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~e~~~-------~~~--~~~~~ivrp~~~~~~~~~~~~~~~~~~~~~~~~i~~~DvA~~~~~~ 180 (183)
T PF13460_consen 110 SDEDKPIFPEYARDKREAEEAL-------RES--GLNWTIVRPGWIYGNPSRSYRLIKEGGPQGVNFISREDVAKAIVEA 180 (183)
T ss_dssp EGGTCGGGHHHHHHHHHHHHHH-------HHS--TSEEEEEEESEEEBTTSSSEEEESSTSTTSHCEEEHHHHHHHHHHH
T ss_pred ccccccchhhhHHHHHHHHHHH-------Hhc--CCCEEEEECcEeEeCCCcceeEEeccCCCCcCcCCHHHHHHHHHHH
Confidence 011123445554443222 223 788889999998776533211 1 11123456789999999888
Q ss_pred Hh
Q 023441 261 IN 262 (282)
Q Consensus 261 ~~ 262 (282)
+.
T Consensus 181 l~ 182 (183)
T PF13460_consen 181 LE 182 (183)
T ss_dssp HH
T ss_pred hC
Confidence 75
|
... |
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-11 Score=104.04 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=116.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc----ccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG----ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~----~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+++||||||+|-||.+++.+|.++|+. |++++.-... ++..+++..+ +.++.++..|++|.+.+++++...
T Consensus 1 ~~~~VLVtGgaGyiGsht~l~L~~~gy~--v~~vDNl~n~~~~sl~r~~~l~~~-~~~v~f~~~Dl~D~~~L~kvF~~~- 76 (343)
T KOG1371|consen 1 GGKHVLVTGGAGYIGSHTVLALLKRGYG--VVIVDNLNNSYLESLKRVRQLLGE-GKSVFFVEGDLNDAEALEKLFSEV- 76 (343)
T ss_pred CCcEEEEecCCcceehHHHHHHHhCCCc--EEEEecccccchhHHHHHHHhcCC-CCceEEEEeccCCHHHHHHHHhhc-
Confidence 3689999999999999999999999998 7777653332 2222233222 478999999999999999999875
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++|.++|-|+... .... -+......+.|+.++++++..+..+-. ..+|+.||..-
T Consensus 77 ----~fd~V~Hfa~~~~-------vgeS----~~~p~~Y~~nNi~gtlnlLe~~~~~~~----------~~~V~sssatv 131 (343)
T KOG1371|consen 77 ----KFDAVMHFAALAA-------VGES----MENPLSYYHNNIAGTLNLLEVMKAHNV----------KALVFSSSATV 131 (343)
T ss_pred ----CCceEEeehhhhc-------cchh----hhCchhheehhhhhHHHHHHHHHHcCC----------ceEEEecceee
Confidence 6999999999875 1111 122256688999999999988765432 26777777542
Q ss_pred ccC--------CCCCC-CcccchhhHHHHHHHHHHHHHHhc
Q 023441 183 SIG--------DNRLG-GWHSYRASKAALNQLTKSVSVEFG 214 (282)
Q Consensus 183 ~~~--------~~~~~-~~~~Y~~sKa~~~~l~~~la~e~~ 214 (282)
.-. ..+.. ....|+.+|.+++.+.+.....+.
T Consensus 132 YG~p~~ip~te~~~t~~p~~pyg~tK~~iE~i~~d~~~~~~ 172 (343)
T KOG1371|consen 132 YGLPTKVPITEEDPTDQPTNPYGKTKKAIEEIIHDYNKAYG 172 (343)
T ss_pred ecCcceeeccCcCCCCCCCCcchhhhHHHHHHHHhhhcccc
Confidence 211 11222 567899999999999998887764
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.2e-11 Score=113.54 Aligned_cols=205 Identities=18% Similarity=0.202 Sum_probs=128.8
Q ss_pred EEEEecCCCchhHHHHHHHH--hcCCCcEEEEeecCCCcccccccccccCC-CceeEEEeeCCChhHH--HHHHHHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLL--EKNDKGCVIATCRNPNGATGLLDLKNRFP-ERLDVLQLDLTVESTI--EASAKSIKEK 104 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la--~~G~~~~vi~~~r~~~~~~~~~~~~~~~~-~~v~~~~~Dls~~~~~--~~~~~~~~~~ 104 (282)
++|||||||.||.+++++|+ .+|.+ |++++|+.... .........+ .++.++.+|++|++.. ...++.+
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~--V~~l~R~~~~~-~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l--- 75 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRREAT--VHVLVRRQSLS-RLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL--- 75 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCCCCE--EEEEECcchHH-HHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh---
Confidence 69999999999999999999 47776 99999965332 1222211112 4789999999985310 1112222
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
.++|++||+|+... .. ........+|+.++.++++.+...- . .++|++||....-
T Consensus 76 -~~~D~Vih~Aa~~~-------~~-------~~~~~~~~~nv~gt~~ll~~a~~~~----~------~~~v~~SS~~v~g 130 (657)
T PRK07201 76 -GDIDHVVHLAAIYD-------LT-------ADEEAQRAANVDGTRNVVELAERLQ----A------ATFHHVSSIAVAG 130 (657)
T ss_pred -cCCCEEEECceeec-------CC-------CCHHHHHHHHhHHHHHHHHHHHhcC----C------CeEEEEecccccc
Confidence 37999999999753 11 1123456889999999988875431 1 2788888865431
Q ss_pred CC----------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc-----------------c
Q 023441 185 GD----------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR-----------------P 237 (282)
Q Consensus 185 ~~----------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~-----------------~ 237 (282)
.. .+......|+.+|...+.+.+. .. ++.+..+.|+.+..+-.. .
T Consensus 131 ~~~~~~~e~~~~~~~~~~~~Y~~sK~~~E~~~~~------~~--g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~ 202 (657)
T PRK07201 131 DYEGVFREDDFDEGQGLPTPYHRTKFEAEKLVRE------EC--GLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAK 202 (657)
T ss_pred CccCccccccchhhcCCCCchHHHHHHHHHHHHH------cC--CCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHH
Confidence 10 0111235699999999987752 12 677888899888553210 0
Q ss_pred c---ccCCC-------CCCCCChHHHHHHHHHHHhhcCCCCCCceeec
Q 023441 238 F---QRNVP-------EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 238 ~---~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~ 275 (282)
. ....+ .......++++.++..++.. ....|..|.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~vddva~ai~~~~~~--~~~~g~~~ni 248 (657)
T PRK07201 203 LAKLPSWLPMVGPDGGRTNIVPVDYVADALDHLMHK--DGRDGQTFHL 248 (657)
T ss_pred hccCCcccccccCCCCeeeeeeHHHHHHHHHHHhcC--cCCCCCEEEe
Confidence 0 00011 12334678999998887763 3345666655
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.1e-11 Score=99.98 Aligned_cols=174 Identities=21% Similarity=0.252 Sum_probs=123.6
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccE
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNL 110 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~ 110 (282)
+||||++|-+|.++++.|. .+.+ |+.++|.. +|++|.+.+.+++++. ++|+
T Consensus 3 iLi~G~~GqLG~~L~~~l~-~~~~--v~a~~~~~---------------------~Ditd~~~v~~~i~~~-----~PDv 53 (281)
T COG1091 3 ILITGANGQLGTELRRALP-GEFE--VIATDRAE---------------------LDITDPDAVLEVIRET-----RPDV 53 (281)
T ss_pred EEEEcCCChHHHHHHHHhC-CCce--EEeccCcc---------------------ccccChHHHHHHHHhh-----CCCE
Confidence 8999999999999999998 5555 77766644 7999999999999986 8999
Q ss_pred EEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC---
Q 023441 111 LINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN--- 187 (282)
Q Consensus 111 lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~--- 187 (282)
+||+|+.... +....+-++.+.+|..++.++.+++...- ..+|++|+-+-+-+..
T Consensus 54 VIn~AAyt~v-----------D~aE~~~e~A~~vNa~~~~~lA~aa~~~g-----------a~lVhiSTDyVFDG~~~~~ 111 (281)
T COG1091 54 VINAAAYTAV-----------DKAESEPELAFAVNATGAENLARAAAEVG-----------ARLVHISTDYVFDGEKGGP 111 (281)
T ss_pred EEECcccccc-----------ccccCCHHHHHHhHHHHHHHHHHHHHHhC-----------CeEEEeecceEecCCCCCC
Confidence 9999998741 11123356789999999999999987643 3899999877654432
Q ss_pred -----CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------C------CC-CCCC
Q 023441 188 -----RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------N------VP-EGKL 247 (282)
Q Consensus 188 -----~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~------~~-~~~~ 247 (282)
...+...|+.||...+..++... ++ ...+...|+.....+.|.. . .. ....
T Consensus 112 Y~E~D~~~P~nvYG~sKl~GE~~v~~~~----~~-----~~I~Rtswv~g~~g~nFv~tml~la~~~~~l~vv~Dq~gsP 182 (281)
T COG1091 112 YKETDTPNPLNVYGRSKLAGEEAVRAAG----PR-----HLILRTSWVYGEYGNNFVKTMLRLAKEGKELKVVDDQYGSP 182 (281)
T ss_pred CCCCCCCCChhhhhHHHHHHHHHHHHhC----CC-----EEEEEeeeeecCCCCCHHHHHHHHhhcCCceEEECCeeeCC
Confidence 23455789999999998877554 22 2223445554443222211 1 01 1223
Q ss_pred CChHHHHHHHHHHHhhc
Q 023441 248 FTKEFSVQKLLNIINNI 264 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~ 264 (282)
...+++|..+..++...
T Consensus 183 t~~~dlA~~i~~ll~~~ 199 (281)
T COG1091 183 TYTEDLADAILELLEKE 199 (281)
T ss_pred ccHHHHHHHHHHHHhcc
Confidence 46689999999988754
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=109.50 Aligned_cols=126 Identities=15% Similarity=0.224 Sum_probs=88.2
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCC-cEEEEeecCCCcccc---cc-ccc---------ccC--------CCceeE
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDK-GCVIATCRNPNGATG---LL-DLK---------NRF--------PERLDV 83 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~-~~vi~~~r~~~~~~~---~~-~~~---------~~~--------~~~v~~ 83 (282)
++||+++||||||.||..++++|++.+.+ .+|+++.|....... +. ++. +.. ..++++
T Consensus 117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~ 196 (605)
T PLN02503 117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP 196 (605)
T ss_pred hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence 68999999999999999999999998754 258888886543221 11 110 011 247999
Q ss_pred EEeeCCChh------HHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhh
Q 023441 84 LQLDLTVES------TIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMS 157 (282)
Q Consensus 84 ~~~Dls~~~------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~ 157 (282)
+..|++++. ..+.+.+ .+|++||+|+... . .+..+..+.+|+.++.++++.+.
T Consensus 197 v~GDl~d~~LGLs~~~~~~L~~-------~vDiVIH~AA~v~-------f-------~~~~~~a~~vNV~GT~nLLelA~ 255 (605)
T PLN02503 197 VVGNVCESNLGLEPDLADEIAK-------EVDVIINSAANTT-------F-------DERYDVAIDINTRGPCHLMSFAK 255 (605)
T ss_pred EEeeCCCcccCCCHHHHHHHHh-------cCCEEEECccccc-------c-------ccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999873 2332222 5999999999763 1 13456778999999999999876
Q ss_pred hhhhcCCCCCccceeEEEEeeccc
Q 023441 158 PLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 158 ~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
..-.- ..++++|+.+
T Consensus 256 ~~~~l---------k~fV~vSTay 270 (605)
T PLN02503 256 KCKKL---------KLFLQVSTAY 270 (605)
T ss_pred HcCCC---------CeEEEccCce
Confidence 53110 1677777754
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-10 Score=100.42 Aligned_cols=174 Identities=20% Similarity=0.133 Sum_probs=124.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++.+++||||+|.||+.++.+|.+.+....+.+.+.......-..+.......++.++.+|+.|..++.++++
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~------- 75 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQ------- 75 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhcc-------
Confidence 5689999999999999999999999944458888877653222223322235689999999999999988777
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
.. .+||+|.... ... ...+-+..+++|+.|+.+++..+...-. .++|.+||..-..+.
T Consensus 76 ~~-~Vvh~aa~~~-------~~~----~~~~~~~~~~vNV~gT~nvi~~c~~~~v----------~~lIYtSs~~Vvf~g 133 (361)
T KOG1430|consen 76 GA-VVVHCAASPV-------PDF----VENDRDLAMRVNVNGTLNVIEACKELGV----------KRLIYTSSAYVVFGG 133 (361)
T ss_pred Cc-eEEEeccccC-------ccc----cccchhhheeecchhHHHHHHHHHHhCC----------CEEEEecCceEEeCC
Confidence 45 6777776543 111 1113456789999999999998876544 389999997755432
Q ss_pred ---------CCCCC--cccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCC
Q 023441 187 ---------NRLGG--WHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234 (282)
Q Consensus 187 ---------~~~~~--~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~ 234 (282)
.|++. ...|+.||+-.+.+.+.... .. .....++.|-.|..+-
T Consensus 134 ~~~~n~~E~~p~p~~~~d~Y~~sKa~aE~~Vl~an~---~~--~l~T~aLR~~~IYGpg 187 (361)
T KOG1430|consen 134 EPIINGDESLPYPLKHIDPYGESKALAEKLVLEANG---SD--DLYTCALRPPGIYGPG 187 (361)
T ss_pred eecccCCCCCCCccccccccchHHHHHHHHHHHhcC---CC--CeeEEEEccccccCCC
Confidence 12232 25899999999988876654 12 6788888998776664
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-10 Score=110.13 Aligned_cols=160 Identities=14% Similarity=0.186 Sum_probs=114.2
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
+++||||+|.||.+++++|+++|++ |++++|+.... ...++.++.+|++|.+++.++++ ++|
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G~~--Vv~l~R~~~~~---------~~~~v~~v~gDL~D~~~l~~al~-------~vD 63 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQGHE--VVGIARHRPDS---------WPSSADFIAADIRDATAVESAMT-------GAD 63 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCE--EEEEECCchhh---------cccCceEEEeeCCCHHHHHHHHh-------CCC
Confidence 6999999999999999999999987 88888875321 11357899999999999887775 589
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCC
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRL 189 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~ 189 (282)
++||+|+... . .+++|+.++.++++++.. .+. +++|++||..
T Consensus 64 ~VVHlAa~~~-------~-------------~~~vNv~GT~nLLeAa~~----~gv------kr~V~iSS~~-------- 105 (854)
T PRK05865 64 VVAHCAWVRG-------R-------------NDHINIDGTANVLKAMAE----TGT------GRIVFTSSGH-------- 105 (854)
T ss_pred EEEECCCccc-------c-------------hHHHHHHHHHHHHHHHHH----cCC------CeEEEECCcH--------
Confidence 9999998642 1 257899999888877643 222 2889888842
Q ss_pred CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc----cccc-----CCC---CCCCCChHHHHHHH
Q 023441 190 GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR----PFQR-----NVP---EGKLFTKEFSVQKL 257 (282)
Q Consensus 190 ~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~----~~~~-----~~~---~~~~~~~~~~a~~~ 257 (282)
|.+.+.+.+ + . ++.+..+.|+.+..+-.. .... ... ...+...+++++++
T Consensus 106 ---------K~aaE~ll~----~---~--gl~~vILRp~~VYGP~~~~~i~~ll~~~v~~~G~~~~~~dfIhVdDVA~Ai 167 (854)
T PRK05865 106 ---------QPRVEQMLA----D---C--GLEWVAVRCALIFGRNVDNWVQRLFALPVLPAGYADRVVQVVHSDDAQRLL 167 (854)
T ss_pred ---------HHHHHHHHH----H---c--CCCEEEEEeceEeCCChHHHHHHHhcCceeccCCCCceEeeeeHHHHHHHH
Confidence 776665553 2 2 577777788887655311 1100 000 11356789999999
Q ss_pred HHHHhh
Q 023441 258 LNIINN 263 (282)
Q Consensus 258 ~~~~~~ 263 (282)
..++..
T Consensus 168 ~~aL~~ 173 (854)
T PRK05865 168 VRALLD 173 (854)
T ss_pred HHHHhC
Confidence 888753
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.1e-10 Score=98.32 Aligned_cols=181 Identities=13% Similarity=0.063 Sum_probs=106.5
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
+++|||||+|.||..++++|+++|.+ |+.. ..|++|.+.+...++. .++
T Consensus 10 ~kiLVtG~tGfiG~~l~~~L~~~g~~--V~~~------------------------~~~~~~~~~v~~~l~~-----~~~ 58 (298)
T PLN02778 10 LKFLIYGKTGWIGGLLGKLCQEQGID--FHYG------------------------SGRLENRASLEADIDA-----VKP 58 (298)
T ss_pred CeEEEECCCCHHHHHHHHHHHhCCCE--EEEe------------------------cCccCCHHHHHHHHHh-----cCC
Confidence 68999999999999999999999987 5431 1345566655555543 268
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee-cccccc---
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS-ARVGSI--- 184 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s-s~~~~~--- 184 (282)
|++||+||....+ .. +...+.-...+++|+.++.++++++...-. +.+++.| +.++..
T Consensus 59 D~ViH~Aa~~~~~-------~~-~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv----------~~v~~sS~~vy~~~~~~ 120 (298)
T PLN02778 59 THVFNAAGVTGRP-------NV-DWCESHKVETIRANVVGTLTLADVCRERGL----------VLTNYATGCIFEYDDAH 120 (298)
T ss_pred CEEEECCcccCCC-------Cc-hhhhhCHHHHHHHHHHHHHHHHHHHHHhCC----------CEEEEecceEeCCCCCC
Confidence 9999999986411 00 111123456789999999999999865311 1444332 222211
Q ss_pred --------C--CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEE-Eeccccc-CCCCcccccCCC----CCCCC
Q 023441 185 --------G--DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICIL-LHPGTVD-TDLSRPFQRNVP----EGKLF 248 (282)
Q Consensus 185 --------~--~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~-i~Pg~v~-t~~~~~~~~~~~----~~~~~ 248 (282)
. ..+.+....|+.+|.+.+.+++.++..+ .+|+.. ..++... ..+........+ .....
T Consensus 121 p~~~~~~~~Ee~~p~~~~s~Yg~sK~~~E~~~~~y~~~~-----~lr~~~~~~~~~~~~~~fi~~~~~~~~~~~~~~s~~ 195 (298)
T PLN02778 121 PLGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKNYENVC-----TLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMT 195 (298)
T ss_pred CcccCCCCCcCCCCCCCCCchHHHHHHHHHHHHHhhccE-----EeeecccCCcccccHHHHHHHHHcCCCeeEcCCCCE
Confidence 1 1111223579999999999988765332 344421 1111100 011111111111 12345
Q ss_pred ChHHHHHHHHHHHhh
Q 023441 249 TKEFSVQKLLNIINN 263 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~ 263 (282)
..++++.+++.++..
T Consensus 196 yv~D~v~al~~~l~~ 210 (298)
T PLN02778 196 ILDELLPISIEMAKR 210 (298)
T ss_pred EHHHHHHHHHHHHhC
Confidence 678888888888753
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=105.86 Aligned_cols=143 Identities=15% Similarity=0.060 Sum_probs=95.2
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
+++|||||+|-||+++++.|.++|.+ |.. ...|++|.+.+.+++... ++
T Consensus 381 mkiLVtGa~G~iG~~l~~~L~~~g~~--v~~------------------------~~~~l~d~~~v~~~i~~~-----~p 429 (668)
T PLN02260 381 LKFLIYGRTGWIGGLLGKLCEKQGIA--YEY------------------------GKGRLEDRSSLLADIRNV-----KP 429 (668)
T ss_pred ceEEEECCCchHHHHHHHHHHhCCCe--EEe------------------------eccccccHHHHHHHHHhh-----CC
Confidence 57999999999999999999999976 421 124688888887776653 68
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc--ccc--
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV--GSI-- 184 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~--~~~-- 184 (282)
|+|||+|+....+ ..+...++-...+.+|+.++.++++.+...-. .++++||.+ +..
T Consensus 430 d~Vih~Aa~~~~~--------~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~-----------~~v~~Ss~~v~~~~~~ 490 (668)
T PLN02260 430 THVFNAAGVTGRP--------NVDWCESHKVETIRANVVGTLTLADVCRENGL-----------LMMNFATGCIFEYDAK 490 (668)
T ss_pred CEEEECCcccCCC--------CCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC-----------eEEEEcccceecCCcc
Confidence 9999999976311 11112234457789999999999999875311 334444422 110
Q ss_pred -------C---C-CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEe
Q 023441 185 -------G---D-NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLH 226 (282)
Q Consensus 185 -------~---~-~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~ 226 (282)
+ + .+.+....|+.+|.+.+.+++.+...+ .+|+..+.
T Consensus 491 ~~~~~~~p~~E~~~~~~~~~~Yg~sK~~~E~~~~~~~~~~-----~~r~~~~~ 538 (668)
T PLN02260 491 HPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREYDNVC-----TLRVRMPI 538 (668)
T ss_pred cccccCCCCCcCCCCCCCCChhhHHHHHHHHHHHhhhhhe-----EEEEEEec
Confidence 0 1 112233679999999999988764221 45555544
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-09 Score=92.60 Aligned_cols=171 Identities=12% Similarity=0.119 Sum_probs=106.4
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC-c
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS-L 108 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~-i 108 (282)
+++||||||.+|..++++|+++|.+ |.+.+|++++... ..+..+.+|+.|++++.++++.. +.+.. +
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~--V~~~~R~~~~~~~---------~~~~~~~~d~~d~~~l~~a~~~~-~~~~g~~ 68 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVP--FLVASRSSSSSAG---------PNEKHVKFDWLDEDTWDNPFSSD-DGMEPEI 68 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCc--EEEEeCCCccccC---------CCCccccccCCCHHHHHHHHhcc-cCcCCce
Confidence 4899999999999999999999988 9999999875421 24566789999999999988653 22334 8
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|.++++++... . .. ....+++++ +++.+- .++|++||.....+
T Consensus 69 d~v~~~~~~~~-------~---------~~--------~~~~~~i~a----a~~~gv------~~~V~~Ss~~~~~~--- 111 (285)
T TIGR03649 69 SAVYLVAPPIP-------D---------LA--------PPMIKFIDF----ARSKGV------RRFVLLSASIIEKG--- 111 (285)
T ss_pred eEEEEeCCCCC-------C---------hh--------HHHHHHHHH----HHHcCC------CEEEEeeccccCCC---
Confidence 99999877431 0 00 011122333 333322 38999988543221
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-----ccc--------CCCCCCCCChHHHHH
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-----FQR--------NVPEGKLFTKEFSVQ 255 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~-----~~~--------~~~~~~~~~~~~~a~ 255 (282)
...+...+.+.+ +. . ++....+.|+++..++... ... ......+.+.+++++
T Consensus 112 -------~~~~~~~~~~l~----~~--~--gi~~tilRp~~f~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~Dva~ 176 (285)
T TIGR03649 112 -------GPAMGQVHAHLD----SL--G--GVEYTVLRPTWFMENFSEEFHVEAIRKENKIYSATGDGKIPFVSADDIAR 176 (285)
T ss_pred -------CchHHHHHHHHH----hc--c--CCCEEEEeccHHhhhhcccccccccccCCeEEecCCCCccCcccHHHHHH
Confidence 112222222221 11 2 5677777998775543211 000 011234568899999
Q ss_pred HHHHHHhhc
Q 023441 256 KLLNIINNI 264 (282)
Q Consensus 256 ~~~~~~~~~ 264 (282)
.+..++...
T Consensus 177 ~~~~~l~~~ 185 (285)
T TIGR03649 177 VAYRALTDK 185 (285)
T ss_pred HHHHHhcCC
Confidence 999988753
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-09 Score=92.62 Aligned_cols=204 Identities=15% Similarity=0.052 Sum_probs=114.3
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccE
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNL 110 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~ 110 (282)
+|||||+|.||.+++++|+++|++ |++++|+......... .. ..|+.. .. ..+.+..+|+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~--------~~--~~~~~~-~~-------~~~~~~~~D~ 60 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHE--VTILTRSPPAGANTKW--------EG--YKPWAP-LA-------ESEALEGADA 60 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCE--EEEEeCCCCCCCcccc--------ee--eecccc-cc-------hhhhcCCCCE
Confidence 689999999999999999999987 9999998876432110 01 112221 11 1223357999
Q ss_pred EEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc--cccCCCC
Q 023441 111 LINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV--GSIGDNR 188 (282)
Q Consensus 111 lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~--~~~~~~~ 188 (282)
+||++|... .. .....+.....+++|+.++.++++++...-.+ ...+++.|+.. +.....+
T Consensus 61 Vvh~a~~~~-------~~--~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~--------~~~~i~~S~~~~yg~~~~~~ 123 (292)
T TIGR01777 61 VINLAGEPI-------AD--KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK--------PKVFISASAVGYYGTSEDRV 123 (292)
T ss_pred EEECCCCCc-------cc--ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC--------ceEEEEeeeEEEeCCCCCCC
Confidence 999999642 10 11222344567789999999998887643110 02455555532 2111100
Q ss_pred ------CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCC---cc----c---c-----cCCCCCCC
Q 023441 189 ------LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS---RP----F---Q-----RNVPEGKL 247 (282)
Q Consensus 189 ------~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~---~~----~---~-----~~~~~~~~ 247 (282)
......|+..+...+...+ .+... ++.+..+.|+.+..+-. .. + . .......+
T Consensus 124 ~~E~~~~~~~~~~~~~~~~~e~~~~----~~~~~--~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 197 (292)
T TIGR01777 124 FTEEDSPAGDDFLAELCRDWEEAAQ----AAEDL--GTRVVLLRTGIVLGPKGGALAKMLPPFRLGLGGPLGSGRQWFSW 197 (292)
T ss_pred cCcccCCCCCChHHHHHHHHHHHhh----hchhc--CCceEEEeeeeEECCCcchhHHHHHHHhcCcccccCCCCccccc
Confidence 1111123333333322222 22223 67888889998865521 00 0 0 01112355
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 248 FTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
...+++++.+..++... ...|.+...++..
T Consensus 198 i~v~Dva~~i~~~l~~~--~~~g~~~~~~~~~ 227 (292)
T TIGR01777 198 IHIEDLVQLILFALENA--SISGPVNATAPEP 227 (292)
T ss_pred EeHHHHHHHHHHHhcCc--ccCCceEecCCCc
Confidence 68899999999998653 2345554444443
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-10 Score=98.09 Aligned_cols=177 Identities=21% Similarity=0.184 Sum_probs=115.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++||||++|-||.++.++|.++|.+ |+...|+ .+|++|.+++.+++... ++|
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~--v~~~~r~---------------------~~dl~d~~~~~~~~~~~-----~pd 53 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYE--VIATSRS---------------------DLDLTDPEAVAKLLEAF-----KPD 53 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEE--EEEESTT---------------------CS-TTSHHHHHHHHHHH-------S
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCE--EEEeCch---------------------hcCCCCHHHHHHHHHHh-----CCC
Confidence 6899999999999999999999876 7877665 47999999999998876 699
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC---
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD--- 186 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~--- 186 (282)
++|||||... . +....+-+..+.+|+.++.++.+.+...- .++|++||..-+-+.
T Consensus 54 ~Vin~aa~~~--------~---~~ce~~p~~a~~iN~~~~~~la~~~~~~~-----------~~li~~STd~VFdG~~~~ 111 (286)
T PF04321_consen 54 VVINCAAYTN--------V---DACEKNPEEAYAINVDATKNLAEACKERG-----------ARLIHISTDYVFDGDKGG 111 (286)
T ss_dssp EEEE--------------H---HHHHHSHHHHHHHHTHHHHHHHHHHHHCT------------EEEEEEEGGGS-SSTSS
T ss_pred eEeccceeec--------H---HhhhhChhhhHHHhhHHHHHHHHHHHHcC-----------CcEEEeeccEEEcCCccc
Confidence 9999999853 1 11223455789999999999999886532 289999997654332
Q ss_pred -----CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------C------CC-CCC
Q 023441 187 -----NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------N------VP-EGK 246 (282)
Q Consensus 187 -----~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~------~~-~~~ 246 (282)
.+..+...|+.+|...+...+... -+...+.++++..+-...+.. . .. ...
T Consensus 112 ~y~E~d~~~P~~~YG~~K~~~E~~v~~~~---------~~~~IlR~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~d~~~~ 182 (286)
T PF04321_consen 112 PYTEDDPPNPLNVYGRSKLEGEQAVRAAC---------PNALILRTSWVYGPSGRNFLRWLLRRLRQGEPIKLFDDQYRS 182 (286)
T ss_dssp SB-TTS----SSHHHHHHHHHHHHHHHH----------SSEEEEEE-SEESSSSSSHHHHHHHHHHCTSEEEEESSCEE-
T ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHhc---------CCEEEEecceecccCCCchhhhHHHHHhcCCeeEeeCCceeC
Confidence 122345789999999888777511 134455777776552221110 0 00 123
Q ss_pred CCChHHHHHHHHHHHhhcC
Q 023441 247 LFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~ 265 (282)
....+++|+.+..++....
T Consensus 183 p~~~~dlA~~i~~l~~~~~ 201 (286)
T PF04321_consen 183 PTYVDDLARVILELIEKNL 201 (286)
T ss_dssp -EEHHHHHHHHHHHHHHHH
T ss_pred CEEHHHHHHHHHHHHHhcc
Confidence 3467899999999887553
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-10 Score=96.22 Aligned_cols=108 Identities=12% Similarity=0.147 Sum_probs=79.6
Q ss_pred cEEEEecC-CCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 29 GVSLVQGA-SRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 29 k~vlItGa-s~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
.+=.||.. +||||+++|++|+++|++ |+++++... .. ..+ ...+|+++.+++.++++.+.+.+++
T Consensus 15 ~VR~itN~SSGgIG~AIA~~la~~Ga~--Vvlv~~~~~-l~-------~~~----~~~~Dv~d~~s~~~l~~~v~~~~g~ 80 (227)
T TIGR02114 15 SVRSITNHSTGHLGKIITETFLSAGHE--VTLVTTKRA-LK-------PEP----HPNLSIREIETTKDLLITLKELVQE 80 (227)
T ss_pred CceeecCCcccHHHHHHHHHHHHCCCE--EEEEcChhh-cc-------ccc----CCcceeecHHHHHHHHHHHHHHcCC
Confidence 56667775 779999999999999998 777775321 10 000 1458999999999999999999999
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhh
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLL 160 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l 160 (282)
+|++|||||+.. ..+..+.+.++|+++ +..+.+.+.+..-..+
T Consensus 81 iDiLVnnAgv~d-------~~~~~~~s~e~~~~~---~~~~~~~~~~~~~~Ki 123 (227)
T TIGR02114 81 HDILIHSMAVSD-------YTPVYMTDLEQVQAS---DNLNEFLSKQNHEAKI 123 (227)
T ss_pred CCEEEECCEecc-------ccchhhCCHHHHhhh---cchhhhhccccccCCc
Confidence 999999999864 556677778888866 4445566555333333
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-09 Score=93.88 Aligned_cols=167 Identities=19% Similarity=0.205 Sum_probs=114.5
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc---cccccc-------cCCCceeEEEeeCCCh------h
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG---LLDLKN-------RFPERLDVLQLDLTVE------S 92 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~---~~~~~~-------~~~~~v~~~~~Dls~~------~ 92 (282)
+++++|||||.||.-+.++|..+-. ..|+...|....... +.+.+. ...+++.++..|++.+ .
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~-~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~ 79 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSD-AKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSER 79 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCC-CcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHH
Confidence 5799999999999999999888754 248888887663222 333333 3356999999999944 2
Q ss_pred HHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCcccee
Q 023441 93 TIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVA 172 (282)
Q Consensus 93 ~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~ 172 (282)
..+.+.+ .+|.||||++... .. ....+....|+.|+..+++.+.-- +. +
T Consensus 80 ~~~~La~-------~vD~I~H~gA~Vn------~v--------~pYs~L~~~NVlGT~evlrLa~~g--k~--------K 128 (382)
T COG3320 80 TWQELAE-------NVDLIIHNAALVN------HV--------FPYSELRGANVLGTAEVLRLAATG--KP--------K 128 (382)
T ss_pred HHHHHhh-------hcceEEecchhhc------cc--------CcHHHhcCcchHhHHHHHHHHhcC--CC--------c
Confidence 3333333 5899999999874 11 223456778999999999987532 11 2
Q ss_pred EEEEeeccccccCC-----------------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC
Q 023441 173 VVANLSARVGSIGD-----------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233 (282)
Q Consensus 173 ~iv~~ss~~~~~~~-----------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~ 233 (282)
.+.++||++..... ........|+-||.+.+-+++..... |+.+..+.||++-.+
T Consensus 129 p~~yVSsisv~~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r------GLpv~I~Rpg~I~gd 200 (382)
T COG3320 129 PLHYVSSISVGETEYYSNFTVDFDEISPTRNVGQGLAGGYGRSKWVAEKLVREAGDR------GLPVTIFRPGYITGD 200 (382)
T ss_pred eeEEEeeeeeccccccCCCccccccccccccccCccCCCcchhHHHHHHHHHHHhhc------CCCeEEEecCeeecc
Confidence 57778876533210 01122367999999999998876665 566777799998544
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.3e-09 Score=107.58 Aligned_cols=204 Identities=16% Similarity=0.172 Sum_probs=128.4
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcC--CCcEEEEeecCCCcccccccc---cc-------cCCCceeEEEeeCCChhHH-
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKN--DKGCVIATCRNPNGATGLLDL---KN-------RFPERLDVLQLDLTVESTI- 94 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G--~~~~vi~~~r~~~~~~~~~~~---~~-------~~~~~v~~~~~Dls~~~~~- 94 (282)
.++++||||+|.||..++++|+++| ....|+...|+.......... .. ....++.++.+|++++.--
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence 5899999999999999999999987 334588888876543322111 11 1124799999999865200
Q ss_pred -HHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeE
Q 023441 95 -EASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAV 173 (282)
Q Consensus 95 -~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~ 173 (282)
....+++. ..+|++||||+... .. ..+......|+.++.++++.+... +. .+
T Consensus 1051 ~~~~~~~l~---~~~d~iiH~Aa~~~-------~~-------~~~~~~~~~nv~gt~~ll~~a~~~----~~------~~ 1103 (1389)
T TIGR03443 1051 SDEKWSDLT---NEVDVIIHNGALVH-------WV-------YPYSKLRDANVIGTINVLNLCAEG----KA------KQ 1103 (1389)
T ss_pred CHHHHHHHH---hcCCEEEECCcEec-------Cc-------cCHHHHHHhHHHHHHHHHHHHHhC----CC------ce
Confidence 11122221 36999999999763 10 112234457999999999887542 11 27
Q ss_pred EEEeeccccccC--------------------CC-----CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecc
Q 023441 174 VANLSARVGSIG--------------------DN-----RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPG 228 (282)
Q Consensus 174 iv~~ss~~~~~~--------------------~~-----~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg 228 (282)
++++||...... .. +......|+.||...+.+++..+. . ++.+..+.||
T Consensus 1104 ~v~vSS~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~----~--g~~~~i~Rpg 1177 (1389)
T TIGR03443 1104 FSFVSSTSALDTEYYVNLSDELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK----R--GLRGCIVRPG 1177 (1389)
T ss_pred EEEEeCeeecCcccccchhhhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh----C--CCCEEEECCC
Confidence 888888543210 00 001124599999999988876543 2 6788888999
Q ss_pred cccCCCCccc----------------ccCCC----CCCCCChHHHHHHHHHHHhhc
Q 023441 229 TVDTDLSRPF----------------QRNVP----EGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 229 ~v~t~~~~~~----------------~~~~~----~~~~~~~~~~a~~~~~~~~~~ 264 (282)
.+..+..... ....+ ...+.+.++++++++.++...
T Consensus 1178 ~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~Vddva~ai~~~~~~~ 1233 (1389)
T TIGR03443 1178 YVTGDSKTGATNTDDFLLRMLKGCIQLGLIPNINNTVNMVPVDHVARVVVAAALNP 1233 (1389)
T ss_pred ccccCCCcCCCCchhHHHHHHHHHHHhCCcCCCCCccccccHHHHHHHHHHHHhCC
Confidence 9865421110 00011 234567899999998887643
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.8e-10 Score=89.63 Aligned_cols=85 Identities=24% Similarity=0.236 Sum_probs=70.7
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
+++||||+ |+|.+++++|+++|++ |++.+|+.+..+.+...+.. +.++.++++|++|.++++++++.+.++++++|
T Consensus 2 ~vlVtGGt-G~gg~la~~L~~~G~~--V~v~~R~~~~~~~l~~~l~~-~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id 77 (177)
T PRK08309 2 HALVIGGT-GMLKRVSLWLCEKGFH--VSVIARREVKLENVKRESTT-PESITPLPLDYHDDDALKLAIKSTIEKNGPFD 77 (177)
T ss_pred EEEEECcC-HHHHHHHHHHHHCcCE--EEEEECCHHHHHHHHHHhhc-CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCe
Confidence 68999998 7888899999999998 88889987665544433322 45788999999999999999999999999999
Q ss_pred EEEECcccC
Q 023441 110 LLINASGIL 118 (282)
Q Consensus 110 ~lv~~ag~~ 118 (282)
++|+..-..
T Consensus 78 ~lv~~vh~~ 86 (177)
T PRK08309 78 LAVAWIHSS 86 (177)
T ss_pred EEEEecccc
Confidence 999877654
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-08 Score=84.09 Aligned_cols=211 Identities=16% Similarity=0.119 Sum_probs=138.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc----ccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL----LDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~----~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
++|++||||-||-=|.-+|+.|+++|+. |..+.|......-. .+.--....++++..+|++|...+.++++.+
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekGY~--VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v- 77 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKGYE--VHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEV- 77 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcCcE--EEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhc-
Confidence 4699999999999999999999999998 99988875433221 1111111236999999999999999999987
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec--c
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA--R 180 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss--~ 180 (282)
.+|-++|-++...-+ .+-+.-..+.+++..|+++++.++.-.-.++ .++.--|| .
T Consensus 78 ----~PdEIYNLaAQS~V~-----------vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~--------~rfYQAStSE~ 134 (345)
T COG1089 78 ----QPDEIYNLAAQSHVG-----------VSFEQPEYTADVDAIGTLRLLEAIRILGEKK--------TRFYQASTSEL 134 (345)
T ss_pred ----Cchhheecccccccc-----------ccccCcceeeeechhHHHHHHHHHHHhCCcc--------cEEEecccHHh
Confidence 689999999876421 1123334568899999999999876543211 13332222 3
Q ss_pred ccccC------CCCCCCcccchhhHHHHHHHHHHHHHHhccCC-CCeEEEEEecccccCCCC-----------------c
Q 023441 181 VGSIG------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKK-DPVICILLHPGTVDTDLS-----------------R 236 (282)
Q Consensus 181 ~~~~~------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~-~~i~v~~i~Pg~v~t~~~-----------------~ 236 (282)
.|... .+|..+.++|+++|....=++...+..+.-+- .+|-+|.=.| ...+.+ +
T Consensus 135 fG~v~~~pq~E~TPFyPrSPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP--~Rge~FVTRKIt~ava~Ik~G~q~ 212 (345)
T COG1089 135 YGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGLFACNGILFNHESP--LRGETFVTRKITRAVARIKLGLQD 212 (345)
T ss_pred hcCcccCccccCCCCCCCCHHHHHHHHHHheeeehHhhcCceeecceeecCCCC--CCccceehHHHHHHHHHHHccccc
Confidence 33322 34566788999999988888887777764321 1455553222 221110 0
Q ss_pred -ccccC-CCCCCCCChHHHHHHHHHHHhhcC
Q 023441 237 -PFQRN-VPEGKLFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 237 -~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~ 265 (282)
-+..+ .....+-...+..+.+|.++....
T Consensus 213 ~l~lGNldAkRDWG~A~DYVe~mwlmLQq~~ 243 (345)
T COG1089 213 KLYLGNLDAKRDWGHAKDYVEAMWLMLQQEE 243 (345)
T ss_pred eEEeccccccccccchHHHHHHHHHHHccCC
Confidence 01111 223466677888899998887654
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.7e-08 Score=81.47 Aligned_cols=215 Identities=13% Similarity=0.139 Sum_probs=139.1
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec-CCC-cccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-NPN-GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r-~~~-~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++-|+++||||.+.||...+..++..=.+...+-.+. .-. .+..+.+. ....+.++++.|+.+...+.-++.+
T Consensus 4 ~~~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~--~n~p~ykfv~~di~~~~~~~~~~~~--- 78 (331)
T KOG0747|consen 4 YKEKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPV--RNSPNYKFVEGDIADADLVLYLFET--- 78 (331)
T ss_pred CccceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhh--ccCCCceEeeccccchHHHHhhhcc---
Confidence 4449999999999999999999998743322333221 111 11111111 2235889999999999988877664
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc--
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV-- 181 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~-- 181 (282)
.+||.++|-|+... .+. +.-+--.....|++++..+++.+..... ..+++++|+..
T Consensus 79 --~~id~vihfaa~t~----------vd~-s~~~~~~~~~nnil~t~~Lle~~~~sg~---------i~~fvhvSTdeVY 136 (331)
T KOG0747|consen 79 --EEIDTVIHFAAQTH----------VDR-SFGDSFEFTKNNILSTHVLLEAVRVSGN---------IRRFVHVSTDEVY 136 (331)
T ss_pred --CchhhhhhhHhhhh----------hhh-hcCchHHHhcCCchhhhhHHHHHHhccC---------eeEEEEeccccee
Confidence 48999999998653 111 1111223467899999999998876542 24889998854
Q ss_pred cccCC-------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc------------cccC-
Q 023441 182 GSIGD-------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------------FQRN- 241 (282)
Q Consensus 182 ~~~~~-------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~------------~~~~- 241 (282)
|.... -...+-..|+++|+|.+++.+++.+.+ ++.+..+.-+.|..|-.-. ..+.
T Consensus 137 Gds~~~~~~~E~s~~nPtnpyAasKaAaE~~v~Sy~~sy-----~lpvv~~R~nnVYGP~q~~~klipkFi~l~~~~~~~ 211 (331)
T KOG0747|consen 137 GDSDEDAVVGEASLLNPTNPYAASKAAAEMLVRSYGRSY-----GLPVVTTRMNNVYGPNQYPEKLIPKFIKLAMRGKEY 211 (331)
T ss_pred cCccccccccccccCCCCCchHHHHHHHHHHHHHHhhcc-----CCcEEEEeccCccCCCcChHHHhHHHHHHHHhCCCc
Confidence 22111 011233579999999999999999998 6667766766666553210 0111
Q ss_pred ------CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeec
Q 023441 242 ------VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 242 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~ 275 (282)
.-...++..+++++++-.++..++ .|+.+++
T Consensus 212 ~i~g~g~~~rs~l~veD~~ea~~~v~~Kg~---~geIYNI 248 (331)
T KOG0747|consen 212 PIHGDGLQTRSYLYVEDVSEAFKAVLEKGE---LGEIYNI 248 (331)
T ss_pred ceecCcccceeeEeHHHHHHHHHHHHhcCC---ccceeec
Confidence 112455789999999888887643 5666653
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-08 Score=83.69 Aligned_cols=191 Identities=18% Similarity=0.147 Sum_probs=111.7
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccE
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNL 110 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~ 110 (282)
++||||||-||++++.+|.+.|.. |+++.|+.++.+...- ..+ ...+.+ ++.... .+|+
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~--v~iltR~~~~~~~~~~------~~v-------~~~~~~----~~~~~~--~~Da 59 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQ--VTILTRRPPKASQNLH------PNV-------TLWEGL----ADALTL--GIDA 59 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCe--EEEEEcCCcchhhhcC------ccc-------cccchh----hhcccC--CCCE
Confidence 589999999999999999999988 9999999987542111 010 011111 111111 6999
Q ss_pred EEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCC
Q 023441 111 LINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLG 190 (282)
Q Consensus 111 lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~ 190 (282)
+||-||..- ....++.+.=+..++ |-+..++.+...+.+.... +.+...+|..|..+. .
T Consensus 60 vINLAG~~I---------~~rrWt~~~K~~i~~----SRi~~T~~L~e~I~~~~~~-----P~~~isaSAvGyYG~---~ 118 (297)
T COG1090 60 VINLAGEPI---------AERRWTEKQKEEIRQ----SRINTTEKLVELIAASETK-----PKVLISASAVGYYGH---S 118 (297)
T ss_pred EEECCCCcc---------ccccCCHHHHHHHHH----HHhHHHHHHHHHHHhccCC-----CcEEEecceEEEecC---C
Confidence 999999642 122244443334433 4455555555555533222 244455555555542 1
Q ss_pred Ccccch----hhHHHHHHHHHHHHHHhccC-CCCeEEEEEecccccCCC---Cc----ccc--------cCCCCCCCCCh
Q 023441 191 GWHSYR----ASKAALNQLTKSVSVEFGRK-KDPVICILLHPGTVDTDL---SR----PFQ--------RNVPEGKLFTK 250 (282)
Q Consensus 191 ~~~~Y~----~sKa~~~~l~~~la~e~~~~-~~~i~v~~i~Pg~v~t~~---~~----~~~--------~~~~~~~~~~~ 250 (282)
....|. ...-.+..+++.+-.+..+. ..++||+.+..|.|..+- .. .++ ...-...+...
T Consensus 119 ~~~~~tE~~~~g~~Fla~lc~~WE~~a~~a~~~gtRvvllRtGvVLs~~GGaL~~m~~~fk~glGG~~GsGrQ~~SWIhi 198 (297)
T COG1090 119 GDRVVTEESPPGDDFLAQLCQDWEEEALQAQQLGTRVVLLRTGVVLSPDGGALGKMLPLFKLGLGGKLGSGRQWFSWIHI 198 (297)
T ss_pred CceeeecCCCCCCChHHHHHHHHHHHHhhhhhcCceEEEEEEEEEecCCCcchhhhcchhhhccCCccCCCCceeeeeeH
Confidence 112222 22335556666665553322 338999999999987642 11 111 11112456789
Q ss_pred HHHHHHHHHHHhh
Q 023441 251 EFSVQKLLNIINN 263 (282)
Q Consensus 251 ~~~a~~~~~~~~~ 263 (282)
||..+.+.++++.
T Consensus 199 eD~v~~I~fll~~ 211 (297)
T COG1090 199 EDLVNAILFLLEN 211 (297)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999986
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.4e-08 Score=88.61 Aligned_cols=161 Identities=15% Similarity=0.063 Sum_probs=109.5
Q ss_pred cCcEEE----EecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 27 KGGVSL----VQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 27 ~gk~vl----ItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.|..+| |+||++|+|.++++.|...|++ |+...+...+.... ...++.-+.+|.+..+....
T Consensus 33 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~--v~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~------ 98 (450)
T PRK08261 33 PGQPLLDGPVLVGGAGRLAEALAALLAGLGYD--VVANNDGGLTWAAG------WGDRFGALVFDATGITDPAD------ 98 (450)
T ss_pred CCCCCCCCceEEccCchhHHHHHHHHhhCCCe--eeecCccccccccC------cCCcccEEEEECCCCCCHHH------
Confidence 456667 8899999999999999999998 77665544421100 01122222233333222111
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+.+.+.+.+..++.|... ++||++++..+
T Consensus 99 -------------------------------------------l~~~~~~~~~~l~~l~~~--------griv~i~s~~~ 127 (450)
T PRK08261 99 -------------------------------------------LKALYEFFHPVLRSLAPC--------GRVVVLGRPPE 127 (450)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhccCC--------CEEEEEccccc
Confidence 113334555566666432 28999998765
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHh
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIIN 262 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 262 (282)
..+ ...|+++|+++.+++++++.|+ +. +++++++.|++ ..++++++.+.++++
T Consensus 128 ~~~------~~~~~~akaal~gl~rsla~E~-~~--gi~v~~i~~~~------------------~~~~~~~~~~~~l~s 180 (450)
T PRK08261 128 AAA------DPAAAAAQRALEGFTRSLGKEL-RR--GATAQLVYVAP------------------GAEAGLESTLRFFLS 180 (450)
T ss_pred cCC------chHHHHHHHHHHHHHHHHHHHh-hc--CCEEEEEecCC------------------CCHHHHHHHHHHhcC
Confidence 422 3469999999999999999999 55 89999998874 367888888888888
Q ss_pred hcCCCCCCceeecCCcc
Q 023441 263 NIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 263 ~~~~~~~g~~~~~d~~~ 279 (282)
....+++|+.+..+++.
T Consensus 181 ~~~a~~~g~~i~~~~~~ 197 (450)
T PRK08261 181 PRSAYVSGQVVRVGAAD 197 (450)
T ss_pred CccCCccCcEEEecCCc
Confidence 77788899988877654
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=79.89 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=107.3
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.-.++++.+++||||+|.||.+++..|..+|.+ ||+.+---...+.-.+.+-. ......+..|+..+ ++.
T Consensus 21 ~~~p~~~lrI~itGgaGFIgSHLvdkLm~egh~--VIa~Dn~ftg~k~n~~~~~~-~~~fel~~hdv~~p-----l~~-- 90 (350)
T KOG1429|consen 21 QVKPSQNLRILITGGAGFIGSHLVDKLMTEGHE--VIALDNYFTGRKENLEHWIG-HPNFELIRHDVVEP-----LLK-- 90 (350)
T ss_pred cccCCCCcEEEEecCcchHHHHHHHHHHhcCCe--EEEEecccccchhhcchhcc-CcceeEEEeechhH-----HHH--
Confidence 335677899999999999999999999999977 88887765554432222211 23677778888765 222
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+|.++|-|.....+ +.. ..-.+++.+|+.++.+++.++.+..+ +++..|+..
T Consensus 91 -----evD~IyhLAapasp~-------~y~----~npvktIktN~igtln~lglakrv~a-----------R~l~aSTse 143 (350)
T KOG1429|consen 91 -----EVDQIYHLAAPASPP-------HYK----YNPVKTIKTNVIGTLNMLGLAKRVGA-----------RFLLASTSE 143 (350)
T ss_pred -----HhhhhhhhccCCCCc-------ccc----cCccceeeecchhhHHHHHHHHHhCc-----------eEEEeeccc
Confidence 478899999887521 111 11235688999999999998876553 555555432
Q ss_pred --cccCC-----------CCCCCcccchhhHHHHHHHHHHHHHHh
Q 023441 182 --GSIGD-----------NRLGGWHSYRASKAALNQLTKSVSVEF 213 (282)
Q Consensus 182 --~~~~~-----------~~~~~~~~Y~~sKa~~~~l~~~la~e~ 213 (282)
|..-. .|....+.|...|...+.|+....++.
T Consensus 144 VYgdp~~hpq~e~ywg~vnpigpr~cydegKr~aE~L~~~y~k~~ 188 (350)
T KOG1429|consen 144 VYGDPLVHPQVETYWGNVNPIGPRSCYDEGKRVAETLCYAYHKQE 188 (350)
T ss_pred ccCCcccCCCccccccccCcCCchhhhhHHHHHHHHHHHHhhccc
Confidence 22100 133456889999999999999888775
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-08 Score=88.35 Aligned_cols=207 Identities=14% Similarity=0.199 Sum_probs=132.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCC-cEEEEeecCCCcccc---cccc--------cc-c---CCCceeEEEee
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDK-GCVIATCRNPNGATG---LLDL--------KN-R---FPERLDVLQLD 87 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~-~~vi~~~r~~~~~~~---~~~~--------~~-~---~~~~v~~~~~D 87 (282)
..++||+++||||||.+|+.+++.|++.-.+ .++.+.-|....... +.++ +. . .-.++..+..|
T Consensus 8 ~f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GD 87 (467)
T KOG1221|consen 8 QFYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGD 87 (467)
T ss_pred HHhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccc
Confidence 3478999999999999999999999997533 357777775543211 1111 11 1 12489999999
Q ss_pred CCChhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCC
Q 023441 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGI 167 (282)
Q Consensus 88 ls~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~ 167 (282)
+++++-=-+.-+.. .....+|++||+|+... . .+.++..+.+|..|+.++++.+..+.+-+
T Consensus 88 i~~~~LGis~~D~~-~l~~eV~ivih~AAtvr-------F-------de~l~~al~iNt~Gt~~~l~lak~~~~l~---- 148 (467)
T KOG1221|consen 88 ISEPDLGISESDLR-TLADEVNIVIHSAATVR-------F-------DEPLDVALGINTRGTRNVLQLAKEMVKLK---- 148 (467)
T ss_pred ccCcccCCChHHHH-HHHhcCCEEEEeeeeec-------c-------chhhhhhhhhhhHhHHHHHHHHHHhhhhh----
Confidence 99775221111111 11137999999999874 2 24567789999999999999988765432
Q ss_pred ccceeEEEEeeccccccC-----CCCCC--------------------------------CcccchhhHHHHHHHHHHHH
Q 023441 168 ERDVAVVANLSARVGSIG-----DNRLG--------------------------------GWHSYRASKAALNQLTKSVS 210 (282)
Q Consensus 168 ~~~~~~iv~~ss~~~~~~-----~~~~~--------------------------------~~~~Y~~sKa~~~~l~~~la 210 (282)
..+++|..+..-. ..+++ -...|.=+|+-.+.+...-+
T Consensus 149 -----~~vhVSTAy~n~~~~~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~ 223 (467)
T KOG1221|consen 149 -----ALVHVSTAYSNCNVGHIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEA 223 (467)
T ss_pred -----eEEEeehhheecccccccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhc
Confidence 7889998775511 00010 01235555554444433222
Q ss_pred HHhccCCCCeEEEEEecccccCCCCcccccCCCC--------------------------CCCCChHHHHHHHHHHH
Q 023441 211 VEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE--------------------------GKLFTKEFSVQKLLNII 261 (282)
Q Consensus 211 ~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~--------------------------~~~~~~~~~a~~~~~~~ 261 (282)
. +.-+..+.|..|.+.+.+++.++... ....+.|.++..++...
T Consensus 224 ~-------~lPivIiRPsiI~st~~EP~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~ 293 (467)
T KOG1221|consen 224 E-------NLPLVIIRPSIITSTYKEPFPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASA 293 (467)
T ss_pred c-------CCCeEEEcCCceeccccCCCCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHH
Confidence 2 56777889999888877766654331 23457788888887544
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=91.44 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=63.0
Q ss_pred ccccCcEEEEecC----------------CCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEee
Q 023441 24 VKWKGGVSLVQGA----------------SRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87 (282)
Q Consensus 24 ~~~~gk~vlItGa----------------s~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~D 87 (282)
.+++||++||||| ||++|.++|++|+++|++ |++++++.. .. . +. .+..+|
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~--V~~v~~~~~-~~-----~---~~--~~~~~d 250 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGAD--VTLVSGPVN-LP-----T---PA--GVKRID 250 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCE--EEEeCCCcc-cc-----C---CC--CcEEEc
Confidence 4689999999999 455999999999999998 888888763 11 0 11 134689
Q ss_pred CCChhHHHHHHHHHHHHcCCccEEEECcccCC
Q 023441 88 LTVESTIEASAKSIKEKYGSLNLLINASGILS 119 (282)
Q Consensus 88 ls~~~~~~~~~~~~~~~~~~id~lv~~ag~~~ 119 (282)
+++.+++.+++. +.++++|++|||||+..
T Consensus 251 v~~~~~~~~~v~---~~~~~~DilI~~Aav~d 279 (399)
T PRK05579 251 VESAQEMLDAVL---AALPQADIFIMAAAVAD 279 (399)
T ss_pred cCCHHHHHHHHH---HhcCCCCEEEEcccccc
Confidence 999888877765 45788999999999875
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-08 Score=98.29 Aligned_cols=163 Identities=16% Similarity=0.222 Sum_probs=132.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc---cccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG---LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~---~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
..|.|+|+||-||.|.++|.+|..+|++ .+++.+|+.-+-.. .....++.|-++.+-.-|++..+..+.+++.. .
T Consensus 1767 peksYii~GGLGGFGLELaqWLi~RGar-~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s-~ 1844 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGAR-KLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEES-N 1844 (2376)
T ss_pred ccceEEEeccccchhHHHHHHHHhcCce-EEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHh-h
Confidence 4589999999999999999999999998 68899998766432 33444555678888888999999999988874 4
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHH---HhhhhhhcCCCCCccceeEEEEeecc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIK---HMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~---~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+++.+-+++|-|.+.. ..-+++.+++.|.+.-.-.+.++.++.+ ..+|.+. .+|.+||+
T Consensus 1845 kl~~vGGiFnLA~VLR-------D~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~Ld-----------yFv~FSSv 1906 (2376)
T KOG1202|consen 1845 KLGPVGGIFNLAAVLR-------DGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELD-----------YFVVFSSV 1906 (2376)
T ss_pred hcccccchhhHHHHHH-------hhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccc-----------eEEEEEee
Confidence 6688999999999986 6777888999999999999999999765 4555443 78888888
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVE 212 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e 212 (282)
..-++ ..+...|+-++++++-++.--+.+
T Consensus 1907 scGRG---N~GQtNYG~aNS~MERiceqRr~~ 1935 (2376)
T KOG1202|consen 1907 SCGRG---NAGQTNYGLANSAMERICEQRRHE 1935 (2376)
T ss_pred cccCC---CCcccccchhhHHHHHHHHHhhhc
Confidence 76666 566788999999999888754443
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-07 Score=82.95 Aligned_cols=194 Identities=11% Similarity=0.032 Sum_probs=112.7
Q ss_pred cccCcEEEEe----cCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccc----ccccC-CCceeEEEeeCCChhHHH
Q 023441 25 KWKGGVSLVQ----GASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD----LKNRF-PERLDVLQLDLTVESTIE 95 (282)
Q Consensus 25 ~~~gk~vlIt----Gas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~----~~~~~-~~~v~~~~~Dls~~~~~~ 95 (282)
....++|||| ||+|.||..++++|+++|++ |++++|+......... ..... ...++++.+|++| +.
T Consensus 49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~--V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~~ 123 (378)
T PLN00016 49 AVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHE--VTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD---VK 123 (378)
T ss_pred ccccceEEEEeccCCCceeEhHHHHHHHHHCCCE--EEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH---HH
Confidence 3455789999 99999999999999999987 9999998765322111 00011 1248889999877 33
Q ss_pred HHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEE
Q 023441 96 ASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVA 175 (282)
Q Consensus 96 ~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv 175 (282)
+++. ...+|++||+++.. ..++..+++++. +.+- .++|
T Consensus 124 ~~~~-----~~~~d~Vi~~~~~~---------------------------~~~~~~ll~aa~----~~gv------kr~V 161 (378)
T PLN00016 124 SKVA-----GAGFDVVYDNNGKD---------------------------LDEVEPVADWAK----SPGL------KQFL 161 (378)
T ss_pred hhhc-----cCCccEEEeCCCCC---------------------------HHHHHHHHHHHH----HcCC------CEEE
Confidence 3331 13699999987631 011223344332 2222 2899
Q ss_pred EeeccccccCCCCCC-----CcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc---------cccC
Q 023441 176 NLSARVGSIGDNRLG-----GWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP---------FQRN 241 (282)
Q Consensus 176 ~~ss~~~~~~~~~~~-----~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~---------~~~~ 241 (282)
++||..........+ ....+. +|...+.+.+ + . ++.+..+.|+.+..+.... ....
T Consensus 162 ~~SS~~vyg~~~~~p~~E~~~~~p~~-sK~~~E~~l~----~---~--~l~~~ilRp~~vyG~~~~~~~~~~~~~~~~~~ 231 (378)
T PLN00016 162 FCSSAGVYKKSDEPPHVEGDAVKPKA-GHLEVEAYLQ----K---L--GVNWTSFRPQYIYGPGNNKDCEEWFFDRLVRG 231 (378)
T ss_pred EEccHhhcCCCCCCCCCCCCcCCCcc-hHHHHHHHHH----H---c--CCCeEEEeceeEECCCCCCchHHHHHHHHHcC
Confidence 999875432111000 011122 6777775543 2 2 5778888998886653211 0111
Q ss_pred C---------CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 242 V---------PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 242 ~---------~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
. ....+...+++++.+..++... ...|..|.+-+
T Consensus 232 ~~i~~~g~g~~~~~~i~v~Dva~ai~~~l~~~--~~~~~~yni~~ 274 (378)
T PLN00016 232 RPVPIPGSGIQLTQLGHVKDLASMFALVVGNP--KAAGQIFNIVS 274 (378)
T ss_pred CceeecCCCCeeeceecHHHHHHHHHHHhcCc--cccCCEEEecC
Confidence 0 0123457899999999888653 23455565543
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=90.40 Aligned_cols=172 Identities=18% Similarity=0.192 Sum_probs=108.1
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++|||||+|.||.+++++|.++|.+ |+.++|..... ....+.++.+|+++.. +.+++ .++|
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~--Vi~ldr~~~~~---------~~~~ve~v~~Dl~d~~-l~~al-------~~~D 62 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHT--VSGIAQHPHDA---------LDPRVDYVCASLRNPV-LQELA-------GEAD 62 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCE--EEEEeCChhhc---------ccCCceEEEccCCCHH-HHHHh-------cCCC
Confidence 6999999999999999999999987 88888865321 1236789999999873 43333 2589
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCC
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRL 189 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~ 189 (282)
++||+++... .. ...+|+.++.++++++... + .++|++||.+|..
T Consensus 63 ~VIHLAa~~~-------~~------------~~~vNv~Gt~nLleAA~~~----G-------vRiV~~SS~~G~~----- 107 (699)
T PRK12320 63 AVIHLAPVDT-------SA------------PGGVGITGLAHVANAAARA----G-------ARLLFVSQAAGRP----- 107 (699)
T ss_pred EEEEcCccCc-------cc------------hhhHHHHHHHHHHHHHHHc----C-------CeEEEEECCCCCC-----
Confidence 9999998642 10 1247899999998887532 1 1688888764321
Q ss_pred CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------cc---CCCCCCCCChHHHHHHHH
Q 023441 190 GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--------QR---NVPEGKLFTKEFSVQKLL 258 (282)
Q Consensus 190 ~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--------~~---~~~~~~~~~~~~~a~~~~ 258 (282)
..|.. .+.+.+ + . ++.+..+.|..+..+..... .. ..........+++++.++
T Consensus 108 ---~~~~~----aE~ll~----~---~--~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~pI~vIyVdDvv~alv 171 (699)
T PRK12320 108 ---ELYRQ----AETLVS----T---G--WAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSARPIRVLHLDDLVRFLV 171 (699)
T ss_pred ---ccccH----HHHHHH----h---c--CCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcCCceEEEEHHHHHHHHH
Confidence 12321 222221 1 1 34556667777766532210 00 011112247899999988
Q ss_pred HHHhhcCCCCCCceeec
Q 023441 259 NIINNIKSHDNGKFFAW 275 (282)
Q Consensus 259 ~~~~~~~~~~~g~~~~~ 275 (282)
.++... .+| .|++
T Consensus 172 ~al~~~---~~G-iyNI 184 (699)
T PRK12320 172 LALNTD---RNG-VVDL 184 (699)
T ss_pred HHHhCC---CCC-EEEE
Confidence 888642 245 5554
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.6e-08 Score=80.28 Aligned_cols=191 Identities=16% Similarity=0.158 Sum_probs=111.6
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccE
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNL 110 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~ 110 (282)
++|+||||.+|+.+++.|++.|.+ |.++.|+..+. ..+.++. ..++++.+|+.|.+++.++++ .+|.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~--V~~l~R~~~~~--~~~~l~~--~g~~vv~~d~~~~~~l~~al~-------g~d~ 67 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS--VRALVRDPSSD--RAQQLQA--LGAEVVEADYDDPESLVAALK-------GVDA 67 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC--EEEEESSSHHH--HHHHHHH--TTTEEEES-TT-HHHHHHHHT-------TCSE
T ss_pred CEEECCccHHHHHHHHHHHhCCCC--cEEEEeccchh--hhhhhhc--ccceEeecccCCHHHHHHHHc-------CCce
Confidence 689999999999999999999887 99999998332 1222222 245678999999999988887 6899
Q ss_pred EEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC--CC
Q 023441 111 LINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD--NR 188 (282)
Q Consensus 111 lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~--~~ 188 (282)
++++.+... . .-.....++++++...-. .++|. ||....... ..
T Consensus 68 v~~~~~~~~-------~----------------~~~~~~~~li~Aa~~agV----------k~~v~-ss~~~~~~~~~~~ 113 (233)
T PF05368_consen 68 VFSVTPPSH-------P----------------SELEQQKNLIDAAKAAGV----------KHFVP-SSFGADYDESSGS 113 (233)
T ss_dssp EEEESSCSC-------C----------------CHHHHHHHHHHHHHHHT-----------SEEEE-SEESSGTTTTTTS
T ss_pred EEeecCcch-------h----------------hhhhhhhhHHHhhhcccc----------ceEEE-EEecccccccccc
Confidence 999988652 0 001123344555443322 26764 444332211 11
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc------cccC-------CC---CCCCC-ChH
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------FQRN-------VP---EGKLF-TKE 251 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~------~~~~-------~~---~~~~~-~~~ 251 (282)
.+... +-..|..++.+.+.. ++....|.||+....+... .... .+ ..... +.+
T Consensus 114 ~p~~~-~~~~k~~ie~~l~~~---------~i~~t~i~~g~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (233)
T PF05368_consen 114 EPEIP-HFDQKAEIEEYLRES---------GIPYTIIRPGFFMENLLPPFAPVVDIKKSKDVVTLPGPGNQKAVPVTDTR 183 (233)
T ss_dssp TTHHH-HHHHHHHHHHHHHHC---------TSEBEEEEE-EEHHHHHTTTHHTTCSCCTSSEEEEETTSTSEEEEEEHHH
T ss_pred cccch-hhhhhhhhhhhhhhc---------cccceeccccchhhhhhhhhcccccccccceEEEEccCCCccccccccHH
Confidence 11112 223555554433322 5677777898764332211 1100 11 12333 779
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
++++.+..++........|..+..-+.
T Consensus 184 Dvg~~va~il~~p~~~~~~~~~~~~~~ 210 (233)
T PF05368_consen 184 DVGRAVAAILLDPEKHNNGKTIFLAGE 210 (233)
T ss_dssp HHHHHHHHHHHSGGGTTEEEEEEEGGG
T ss_pred HHHHHHHHHHcChHHhcCCEEEEeCCC
Confidence 999999999988655546666665443
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.3e-08 Score=85.11 Aligned_cols=85 Identities=20% Similarity=0.088 Sum_probs=64.8
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC---CcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP---NGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~---~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
+++||+++|+|| ||+|++++..|++.|++ .|++++|+. ++.+++.+.+......+.+..+|+++.+++.+.++
T Consensus 123 ~~~~k~vlI~GA-GGagrAia~~La~~G~~-~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-- 198 (289)
T PRK12548 123 DVKGKKLTVIGA-GGAATAIQVQCALDGAK-EITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIA-- 198 (289)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCC-EEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhc--
Confidence 578999999999 69999999999999986 589999987 44444444443333456667889988777765444
Q ss_pred HHHcCCccEEEECcccC
Q 023441 102 KEKYGSLNLLINASGIL 118 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~ 118 (282)
..|+||||....
T Consensus 199 -----~~DilINaTp~G 210 (289)
T PRK12548 199 -----SSDILVNATLVG 210 (289)
T ss_pred -----cCCEEEEeCCCC
Confidence 469999999765
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.2e-07 Score=82.52 Aligned_cols=114 Identities=16% Similarity=0.211 Sum_probs=74.3
Q ss_pred ccccCcEEEEecC---------------CCc-hhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEee
Q 023441 24 VKWKGGVSLVQGA---------------SRG-IGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87 (282)
Q Consensus 24 ~~~~gk~vlItGa---------------s~g-iG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~D 87 (282)
.+++||++||||| |+| +|.++|++|+++|++ |+++.+..... .+.. ...+|
T Consensus 181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~--V~~~~g~~~~~---------~~~~--~~~~~ 247 (390)
T TIGR00521 181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGAD--VTLITGPVSLL---------TPPG--VKSIK 247 (390)
T ss_pred cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCE--EEEeCCCCccC---------CCCC--cEEEE
Confidence 3589999999999 566 999999999999998 88877665431 1112 25689
Q ss_pred CCChhHH-HHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhh
Q 023441 88 LTVESTI-EASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSP 158 (282)
Q Consensus 88 ls~~~~~-~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 158 (282)
+++.+++ ++++++. ++++|++|+|||+............+ .. ....+.+|+...--+++.+..
T Consensus 248 v~~~~~~~~~~~~~~---~~~~D~~i~~Aavsd~~~~~~~~~Ki---~~--~~~~~~l~L~~~pdil~~l~~ 311 (390)
T TIGR00521 248 VSTAEEMLEAALNEL---AKDFDIFISAAAVADFKPKTVFEGKI---KK--QGEELSLKLVKNPDIIAEVRK 311 (390)
T ss_pred eccHHHHHHHHHHhh---cccCCEEEEccccccccccccccccc---cc--cCCceeEEEEeCcHHHHHHHh
Confidence 9999998 5455342 46899999999998521111111111 11 112345666666666655543
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.9e-07 Score=72.36 Aligned_cols=182 Identities=12% Similarity=0.035 Sum_probs=113.3
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCc-EEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKG-CVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~-~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
++++|||++|-.|+|+.+-+..+|... ..++.+. -.+|+++..+.+++++.. +
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s---------------------kd~DLt~~a~t~~lF~~e-----k 55 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS---------------------KDADLTNLADTRALFESE-----K 55 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc---------------------ccccccchHHHHHHHhcc-----C
Confidence 689999999999999999999988630 1221111 137999999999999875 6
Q ss_pred ccEEEECcccCCCCCCCCCccccccc--chhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc-
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKV--EKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI- 184 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~--~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~- 184 (282)
+-++||.|+..+ +...+. +.+- +..|+.=.-++++.+...-.+ ++++..|.+-+-
T Consensus 56 PthVIhlAAmVG--------Glf~N~~ynldF----~r~Nl~indNVlhsa~e~gv~----------K~vsclStCIfPd 113 (315)
T KOG1431|consen 56 PTHVIHLAAMVG--------GLFHNNTYNLDF----IRKNLQINDNVLHSAHEHGVK----------KVVSCLSTCIFPD 113 (315)
T ss_pred CceeeehHhhhc--------chhhcCCCchHH----HhhcceechhHHHHHHHhchh----------hhhhhcceeecCC
Confidence 888999988764 111111 2233 344444444555555543322 344444433221
Q ss_pred ------------CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc----------------
Q 023441 185 ------------GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR---------------- 236 (282)
Q Consensus 185 ------------~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~---------------- 236 (282)
..++-+.+--|+-+|..+.-..++++.+.+.. ..++.|..+..|--+
T Consensus 114 kt~yPIdEtmvh~gpphpsN~gYsyAKr~idv~n~aY~~qhg~~-----~tsviPtNvfGphDNfnpe~sHVlPali~r~ 188 (315)
T KOG1431|consen 114 KTSYPIDETMVHNGPPHPSNFGYSYAKRMIDVQNQAYRQQHGRD-----YTSVIPTNVFGPHDNFNPENSHVLPALIHRF 188 (315)
T ss_pred CCCCCCCHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHhCCc-----eeeeccccccCCCCCCCcccccchHHHHHHH
Confidence 12334566779999988888889999887654 223344444333100
Q ss_pred ------------ccccCCCCCCCCChHHHHHHHHHHHhh
Q 023441 237 ------------PFQRNVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 237 ------------~~~~~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
-+....|..+++..++.|+.+++++..
T Consensus 189 h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~i~vlr~ 227 (315)
T KOG1431|consen 189 HEAKRNGTDELTVWGSGSPLRQFIYSDDLADLFIWVLRE 227 (315)
T ss_pred HHHHhcCCceEEEecCCChHHHHhhHhHHHHHHHHHHHh
Confidence 112235556677889999999998864
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.9e-07 Score=75.29 Aligned_cols=100 Identities=11% Similarity=0.154 Sum_probs=65.9
Q ss_pred cEEEEecCCC-chhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 29 GVSLVQGASR-GIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 29 k~vlItGas~-giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
.+=.||+.|+ +||.++|++|+++|++ |++++|...... .....+.++.++ + ..++.+.+.+.+++
T Consensus 16 ~VR~itN~SSG~iG~aLA~~L~~~G~~--V~li~r~~~~~~-------~~~~~v~~i~v~--s---~~~m~~~l~~~~~~ 81 (229)
T PRK06732 16 SVRGITNHSTGQLGKIIAETFLAAGHE--VTLVTTKTAVKP-------EPHPNLSIIEIE--N---VDDLLETLEPLVKD 81 (229)
T ss_pred CceeecCccchHHHHHHHHHHHhCCCE--EEEEECcccccC-------CCCCCeEEEEEe--c---HHHHHHHHHHHhcC
Confidence 4777887655 5999999999999998 888887643210 011345666543 2 22233333444567
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHH
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 149 (282)
+|++|||||+.. ..+....+.+++..++++|....
T Consensus 82 ~DivIh~AAvsd-------~~~~~~~~~~~~~~~~~v~~~~~ 116 (229)
T PRK06732 82 HDVLIHSMAVSD-------YTPVYMTDLEEVSASDNLNEFLT 116 (229)
T ss_pred CCEEEeCCccCC-------ceehhhhhhhhhhhhhhhhhhhc
Confidence 999999999874 44555566777888877765544
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-07 Score=75.26 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=65.6
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..++++++++|+||+|++|+++++.|+++|++ |++.+|+.++.+...+.+.+. .......+|..+.+++.++++
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~--V~l~~R~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~--- 96 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGAR--VVLVGRDLERAQKAADSLRAR-FGEGVGAVETSDDAARAAAIK--- 96 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEcCCHHHHHHHHHHHHhh-cCCcEEEeeCCCHHHHHHHHh---
Confidence 35789999999999999999999999999976 899999987766554433211 134456788888888777664
Q ss_pred HHcCCccEEEECcccC
Q 023441 103 EKYGSLNLLINASGIL 118 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~ 118 (282)
+.|++|+++...
T Consensus 97 ----~~diVi~at~~g 108 (194)
T cd01078 97 ----GADVVFAAGAAG 108 (194)
T ss_pred ----cCCEEEECCCCC
Confidence 579888877643
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.1e-06 Score=76.61 Aligned_cols=235 Identities=19% Similarity=0.138 Sum_probs=138.2
Q ss_pred hhhhhhhhccccccccccCcEEEEecCC-CchhHHHHHHHHhcCCCcEEEEeecCCCcc--c---ccccccccCCCceeE
Q 023441 10 SIRKVAFTSSASASVKWKGGVSLVQGAS-RGIGLEFAKQLLEKNDKGCVIATCRNPNGA--T---GLLDLKNRFPERLDV 83 (282)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~gk~vlItGas-~giG~a~a~~la~~G~~~~vi~~~r~~~~~--~---~~~~~~~~~~~~v~~ 83 (282)
++|.+.-.-.+.....+.+|++|||||+ +.||.+++..|+.-|+. ||+...+..+. + .+...-..++..+-+
T Consensus 378 ~ly~~i~a~a~p~~~~y~d~valVTGA~~gSIaa~Vv~~LL~gGAt--VI~TTS~~s~~r~efyr~LYa~~a~~ga~Lwv 455 (866)
T COG4982 378 RLYGRIAAQAKPNGGTYGDKVALVTGASKGSIAAAVVARLLAGGAT--VIATTSRLSEERTEFYRSLYARHARYGAALWV 455 (866)
T ss_pred HHHHHHhhccCCCCCCcccceEEEecCCCcchHHHHHHHHHhCCcE--EEEEcccccHHHHHHHHHHHHhhCCCCceEEE
Confidence 4555544444455677899999999987 58999999999999998 77776655432 1 133334455678889
Q ss_pred EEeeCCChhHHHHHHHHHHHHcC--------------CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHH
Q 023441 84 LQLDLTVESTIEASAKSIKEKYG--------------SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149 (282)
Q Consensus 84 ~~~Dls~~~~~~~~~~~~~~~~~--------------~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 149 (282)
++++.++-.++..+++++.+.-. .+|.+|-=|.+.. .+.+.+..++ -+-.+.+-+++.
T Consensus 456 VpaN~~SysDVdAlIewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v-------~G~l~~agsr-aE~~~rilLw~V 527 (866)
T COG4982 456 VPANMGSYSDVDALIEWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRV-------SGELADAGSR-AEFAMRILLWNV 527 (866)
T ss_pred EeccccchhhHHHHHHHhccccccccCCcceecccccCcceeeecccCCc-------cCccccCCch-HHHHHHHHHHHH
Confidence 99999999999999999977432 1455554444432 2233332221 111233333333
Q ss_pred HHHHHHhhhhhhcCCCCCccce-eEEEEeecc-ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEec
Q 023441 150 ILVIKHMSPLLKVGGTGIERDV-AVVANLSAR-VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHP 227 (282)
Q Consensus 150 ~~~~~~~~~~l~~~~~g~~~~~-~~iv~~ss~-~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~P 227 (282)
. +++-.++++++.+.... -.||.=.|. -|. +++...|+-+|++++.+..-+..|-..-+ .+.+..-.-
T Consensus 528 ~----Rliggl~~~~s~r~v~~R~hVVLPgSPNrG~-----FGgDGaYgEsK~aldav~~RW~sEs~Wa~-~vsl~~A~I 597 (866)
T COG4982 528 L----RLIGGLKKQGSSRGVDTRLHVVLPGSPNRGM-----FGGDGAYGESKLALDAVVNRWHSESSWAA-RVSLAHALI 597 (866)
T ss_pred H----HHHHHhhhhccccCcccceEEEecCCCCCCc-----cCCCcchhhHHHHHHHHHHHhhccchhhH-HHHHhhhhe
Confidence 3 33334444443332222 244443332 122 45678999999999987776655532110 244444445
Q ss_pred cccc-CCCCccccc---C--CCCCCCCChHHHHHHHHHHHhhc
Q 023441 228 GTVD-TDLSRPFQR---N--VPEGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 228 g~v~-t~~~~~~~~---~--~~~~~~~~~~~~a~~~~~~~~~~ 264 (282)
||+. |.++..... . ..--..++++++|..++.+++..
T Consensus 598 GWtrGTGLMg~Ndiiv~aiEk~GV~tyS~~EmA~~LLgL~sae 640 (866)
T COG4982 598 GWTRGTGLMGHNDIIVAAIEKAGVRTYSTDEMAFNLLGLASAE 640 (866)
T ss_pred eeeccccccCCcchhHHHHHHhCceecCHHHHHHHHHhhccHH
Confidence 7773 555443211 0 11124568889888888777543
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8e-06 Score=69.93 Aligned_cols=135 Identities=23% Similarity=0.235 Sum_probs=94.3
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
..+|||||||.+|.+++++|.++|.+ |.+..|+.+...... ..+.+...|+.++..+...++ .+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~--v~~~~r~~~~~~~~~-------~~v~~~~~d~~~~~~l~~a~~-------G~ 64 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHE--VRAAVRNPEAAAALA-------GGVEVVLGDLRDPKSLVAGAK-------GV 64 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCE--EEEEEeCHHHHHhhc-------CCcEEEEeccCCHhHHHHHhc-------cc
Confidence 36899999999999999999999987 999999998876533 478899999999999988777 57
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|.+++..+... +. . ..............+..... ...++.+|+..+..
T Consensus 65 ~~~~~i~~~~~-~~------~----------~~~~~~~~~~~~~a~~a~~~-----------~~~~~~~s~~~~~~---- 112 (275)
T COG0702 65 DGVLLISGLLD-GS------D----------AFRAVQVTAVVRAAEAAGAG-----------VKHGVSLSVLGADA---- 112 (275)
T ss_pred cEEEEEecccc-cc------c----------chhHHHHHHHHHHHHHhcCC-----------ceEEEEeccCCCCC----
Confidence 88888888652 10 0 01222233344444443310 12677777765432
Q ss_pred CCCcccchhhHHHHHHHHHHHHHH
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVE 212 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e 212 (282)
.....|..+|...+...++....
T Consensus 113 -~~~~~~~~~~~~~e~~l~~sg~~ 135 (275)
T COG0702 113 -ASPSALARAKAAVEAALRSSGIP 135 (275)
T ss_pred -CCccHHHHHHHHHHHHHHhcCCC
Confidence 23457899999888776655444
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.6e-05 Score=67.09 Aligned_cols=202 Identities=16% Similarity=0.115 Sum_probs=127.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+.+|-++-|.||||.+|+-++.+|++.|-+ ||+--|-.+.--.-.+..... ..+.+...|+.|++++++++++
T Consensus 57 sS~sGiVaTVFGAtGFlGryvvnklak~GSQ--viiPyR~d~~~~r~lkvmGdL-GQvl~~~fd~~DedSIr~vvk~--- 130 (391)
T KOG2865|consen 57 SSVSGIVATVFGATGFLGRYVVNKLAKMGSQ--VIIPYRGDEYDPRHLKVMGDL-GQVLFMKFDLRDEDSIRAVVKH--- 130 (391)
T ss_pred ccccceEEEEecccccccHHHHHHHhhcCCe--EEEeccCCccchhheeecccc-cceeeeccCCCCHHHHHHHHHh---
Confidence 5678889999999999999999999999998 888777554322222222221 3789999999999999999985
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
-+++||-.|.--++ .+. +.-++|..+.-.+.+.+.+.-. -++|++|+..+.
T Consensus 131 ----sNVVINLIGrd~eT---------knf------~f~Dvn~~~aerlAricke~GV----------erfIhvS~Lgan 181 (391)
T KOG2865|consen 131 ----SNVVINLIGRDYET---------KNF------SFEDVNVHIAERLARICKEAGV----------ERFIHVSCLGAN 181 (391)
T ss_pred ----CcEEEEeecccccc---------CCc------ccccccchHHHHHHHHHHhhCh----------hheeehhhcccc
Confidence 58999999875311 111 1234677777776666654322 289999998754
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC---CCccc------ccCC--------CCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD---LSRPF------QRNV--------PEGK 246 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~---~~~~~------~~~~--------~~~~ 246 (282)
.. .-+-|--+|++.+--+ +.++. + ...|.|..+... +.+.+ .... ...+
T Consensus 182 v~-----s~Sr~LrsK~~gE~aV---rdafP----e--AtIirPa~iyG~eDrfln~ya~~~rk~~~~pL~~~GekT~K~ 247 (391)
T KOG2865|consen 182 VK-----SPSRMLRSKAAGEEAV---RDAFP----E--ATIIRPADIYGTEDRFLNYYASFWRKFGFLPLIGKGEKTVKQ 247 (391)
T ss_pred cc-----ChHHHHHhhhhhHHHH---HhhCC----c--ceeechhhhcccchhHHHHHHHHHHhcCceeeecCCcceeec
Confidence 32 3345666776655433 23343 2 233477766433 21110 1111 1123
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCceeecC
Q 023441 247 LFTKEFSVQKLLNIINNIKSHDNGKFFAWD 276 (282)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d 276 (282)
....-++|+.++..+.+. ...|..+..-
T Consensus 248 PVyV~DVaa~IvnAvkDp--~s~Gktye~v 275 (391)
T KOG2865|consen 248 PVYVVDVAAAIVNAVKDP--DSMGKTYEFV 275 (391)
T ss_pred cEEEehHHHHHHHhccCc--cccCceeeec
Confidence 334568899999888775 4556665543
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.5e-06 Score=63.60 Aligned_cols=80 Identities=23% Similarity=0.202 Sum_probs=59.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
-+++||+++|.|+ ||.|++++..|++.|++ .|.++.|+.++++++.+.+. +..+.++ ++.+.. +.+
T Consensus 8 ~~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~-~i~i~nRt~~ra~~l~~~~~--~~~~~~~--~~~~~~---~~~----- 73 (135)
T PF01488_consen 8 GDLKGKRVLVIGA-GGAARAVAAALAALGAK-EITIVNRTPERAEALAEEFG--GVNIEAI--PLEDLE---EAL----- 73 (135)
T ss_dssp STGTTSEEEEESS-SHHHHHHHHHHHHTTSS-EEEEEESSHHHHHHHHHHHT--GCSEEEE--EGGGHC---HHH-----
T ss_pred CCcCCCEEEEECC-HHHHHHHHHHHHHcCCC-EEEEEECCHHHHHHHHHHcC--cccccee--eHHHHH---HHH-----
Confidence 4789999999997 99999999999999987 79999999988877666552 1233333 444433 222
Q ss_pred HcCCccEEEECcccCC
Q 023441 104 KYGSLNLLINASGILS 119 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~ 119 (282)
...|++|++++...
T Consensus 74 --~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 74 --QEADIVINATPSGM 87 (135)
T ss_dssp --HTESEEEE-SSTTS
T ss_pred --hhCCeEEEecCCCC
Confidence 26899999998763
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.6e-05 Score=67.75 Aligned_cols=202 Identities=16% Similarity=0.113 Sum_probs=118.4
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
..+-.+|+|+||||++|+-+++.|.++|.. |.+..|+.++.++... +.........+..|...+.+...-+.+...+
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~--vra~VRd~~~a~~~~~-~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~ 152 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRGFS--VRALVRDEQKAEDLLG-VFFVDLGLQNVEADVVTAIDILKKLVEAVPK 152 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCCCe--eeeeccChhhhhhhhc-ccccccccceeeeccccccchhhhhhhhccc
Confidence 345579999999999999999999999976 9999999998877555 1111224555566666555444333332111
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
...+++-|+|..+ ... +......+.+.|..++++++..... .++++++++.+..
T Consensus 153 --~~~~v~~~~ggrp-------~~e-------d~~~p~~VD~~g~knlvdA~~~aGv----------k~~vlv~si~~~~ 206 (411)
T KOG1203|consen 153 --GVVIVIKGAGGRP-------EEE-------DIVTPEKVDYEGTKNLVDACKKAGV----------KRVVLVGSIGGTK 206 (411)
T ss_pred --cceeEEecccCCC-------Ccc-------cCCCcceecHHHHHHHHHHHHHhCC----------ceEEEEEeecCcc
Confidence 2566777777653 110 2223356788899999999844332 3899999987764
Q ss_pred CCCCCCCcccchhhH-HHHHHHH-HHHHHHhccCCCCeEEEEEecccccCCCCccc---ccCCC-----CC--CCCChHH
Q 023441 185 GDNRLGGWHSYRASK-AALNQLT-KSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---QRNVP-----EG--KLFTKEF 252 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sK-a~~~~l~-~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---~~~~~-----~~--~~~~~~~ 252 (282)
... .|.... .+...-. +.....+... ++.-..|.||....+..... ....+ .. ...+-..
T Consensus 207 ~~~------~~~~~~~~~~~~~~k~~~e~~~~~S--gl~ytiIR~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~ 278 (411)
T KOG1203|consen 207 FNQ------PPNILLLNGLVLKAKLKAEKFLQDS--GLPYTIIRPGGLEQDTGGQREVVVDDEKELLTVDGGAYSISRLD 278 (411)
T ss_pred cCC------CchhhhhhhhhhHHHHhHHHHHHhc--CCCcEEEeccccccCCCCcceecccCccccccccccceeeehhh
Confidence 432 222222 2222222 2233334444 66666678987755432211 00111 01 1345567
Q ss_pred HHHHHHHHHhh
Q 023441 253 SVQKLLNIINN 263 (282)
Q Consensus 253 ~a~~~~~~~~~ 263 (282)
+|+.+..++..
T Consensus 279 vael~~~all~ 289 (411)
T KOG1203|consen 279 VAELVAKALLN 289 (411)
T ss_pred HHHHHHHHHhh
Confidence 77777776654
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.5e-06 Score=67.89 Aligned_cols=83 Identities=20% Similarity=0.152 Sum_probs=51.5
Q ss_pred ccCcEEEEecCC----------------CchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCC
Q 023441 26 WKGGVSLVQGAS----------------RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89 (282)
Q Consensus 26 ~~gk~vlItGas----------------~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls 89 (282)
|+||+||||+|. |.+|.++|++|+++|++ |+++++....... .... +.++..+..
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~--V~li~g~~~~~~~---~~~~-~~~~~~V~s--- 71 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAH--VIYLHGYFAEKPN---DINN-QLELHPFEG--- 71 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCe--EEEEeCCCcCCCc---ccCC-ceeEEEEec---
Confidence 579999999885 99999999999999998 7777654321110 0000 112233333
Q ss_pred ChhHHHHHHHHHHHHcCCccEEEECcccCC
Q 023441 90 VESTIEASAKSIKEKYGSLNLLINASGILS 119 (282)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~id~lv~~ag~~~ 119 (282)
..++.+.+.++.++ .++|++||+|+...
T Consensus 72 -~~d~~~~l~~~~~~-~~~D~VIH~AAvsD 99 (229)
T PRK09620 72 -IIDLQDKMKSIITH-EKVDAVIMAAAGSD 99 (229)
T ss_pred -HHHHHHHHHHHhcc-cCCCEEEECccccc
Confidence 22222333333321 25899999999874
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.3e-06 Score=72.81 Aligned_cols=78 Identities=28% Similarity=0.364 Sum_probs=66.1
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
+++||.|| |++|+.+|..|+++|. ..|++++|+.++..++.+.. +.++...++|+.|.+++.+++++ .
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~---~~~v~~~~vD~~d~~al~~li~~-------~ 69 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELI---GGKVEALQVDAADVDALVALIKD-------F 69 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhc---cccceeEEecccChHHHHHHHhc-------C
Confidence 57899999 9999999999999995 25999999988877665554 24899999999999999988884 4
Q ss_pred cEEEECcccC
Q 023441 109 NLLINASGIL 118 (282)
Q Consensus 109 d~lv~~ag~~ 118 (282)
|++|+++...
T Consensus 70 d~VIn~~p~~ 79 (389)
T COG1748 70 DLVINAAPPF 79 (389)
T ss_pred CEEEEeCCch
Confidence 9999998754
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.3e-05 Score=61.83 Aligned_cols=152 Identities=20% Similarity=0.246 Sum_probs=102.9
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+.+-.++||||+-|-+|..+|.-|..+ |.+ +||+.+--..... .. +.=-|+-.|+-|...+++++-.
T Consensus 41 ~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~-~VILSDI~KPp~~-V~-------~~GPyIy~DILD~K~L~eIVVn--- 108 (366)
T KOG2774|consen 41 TQKAPRVLITGSLGQLGRGLASLLRYMYGSE-CVILSDIVKPPAN-VT-------DVGPYIYLDILDQKSLEEIVVN--- 108 (366)
T ss_pred cCCCCeEEEecchHHHhHHHHHHHHHHhCCc-cEehhhccCCchh-hc-------ccCCchhhhhhccccHHHhhcc---
Confidence 445579999999999999999888776 544 5776443222211 11 1224677899999999888754
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.+||-+||-.+... .-. ........++|+.|..++++.+..+- .-+++-|..|-
T Consensus 109 --~RIdWL~HfSALLS-------AvG-----E~NVpLA~~VNI~GvHNil~vAa~~k------------L~iFVPSTIGA 162 (366)
T KOG2774|consen 109 --KRIDWLVHFSALLS-------AVG-----ETNVPLALQVNIRGVHNILQVAAKHK------------LKVFVPSTIGA 162 (366)
T ss_pred --cccceeeeHHHHHH-------Hhc-----ccCCceeeeecchhhhHHHHHHHHcC------------eeEeecccccc
Confidence 48999999887653 111 12233558899999999999887653 33445554444
Q ss_pred cCC----CCCC------CcccchhhHHHHHHHHHHHHHHhc
Q 023441 184 IGD----NRLG------GWHSYRASKAALNQLTKSVSVEFG 214 (282)
Q Consensus 184 ~~~----~~~~------~~~~Y~~sKa~~~~l~~~la~e~~ 214 (282)
++. +|.+ ....|+.||--.+.+-..+..+++
T Consensus 163 FGPtSPRNPTPdltIQRPRTIYGVSKVHAEL~GEy~~hrFg 203 (366)
T KOG2774|consen 163 FGPTSPRNPTPDLTIQRPRTIYGVSKVHAELLGEYFNHRFG 203 (366)
T ss_pred cCCCCCCCCCCCeeeecCceeechhHHHHHHHHHHHHhhcC
Confidence 432 2222 346799999988888888888774
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00016 Score=63.62 Aligned_cols=155 Identities=13% Similarity=0.026 Sum_probs=97.3
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++++|||++|.+|..++..|+.++....+++.+.++... ...++.... ... ...|+++.+++.+.+. ..
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g-~a~Dl~~~~-~~~--~i~~~~~~~d~~~~l~-------~a 87 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPG-VAADVSHIN-TPA--QVRGFLGDDQLGDALK-------GA 87 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCe-eEchhhhCC-cCc--eEEEEeCCCCHHHHcC-------CC
Confidence 589999999999999999999877644599999988222 233332211 122 2235444444443333 69
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc----cc
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG----SI 184 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~----~~ 184 (282)
|++|+.||....+ ...+.+.+..|+.....+.+.+.++-- . +.++++|-... ..
T Consensus 88 DiVVitAG~~~~~-------------g~~R~dll~~N~~i~~~i~~~i~~~~p---~------aivivvSNPvD~~~~i~ 145 (323)
T PLN00106 88 DLVIIPAGVPRKP-------------GMTRDDLFNINAGIVKTLCEAVAKHCP---N------ALVNIISNPVNSTVPIA 145 (323)
T ss_pred CEEEEeCCCCCCC-------------CCCHHHHHHHHHHHHHHHHHHHHHHCC---C------eEEEEeCCCccccHHHH
Confidence 9999999986411 134667788888887777766654431 1 25666665553 11
Q ss_pred -----CCCCCCCcccchhhHHHHHHHHHHHHHHhccC
Q 023441 185 -----GDNRLGGWHSYRASKAALNQLTKSVSVEFGRK 216 (282)
Q Consensus 185 -----~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~ 216 (282)
...+++....|+.++.-..-|-..++.++.-.
T Consensus 146 t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA~~lgv~ 182 (323)
T PLN00106 146 AEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGLD 182 (323)
T ss_pred HHHHHHcCCCCcceEEEEecchHHHHHHHHHHHhCCC
Confidence 12335667889998744445666788887543
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.02 E-value=1e-05 Score=73.32 Aligned_cols=78 Identities=24% Similarity=0.372 Sum_probs=59.6
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccE
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNL 110 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~ 110 (282)
|+|.|| |.+|+.+++.|++++....|++.+|+.+++++..+.. .+.++.++++|+.|.+++.++++ ..|+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~l~~~~~-------~~dv 70 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--LGDRVEAVQVDVNDPESLAELLR-------GCDV 70 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----TTTTEEEEE--TTTHHHHHHHHT-------TSSE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--cccceeEEEEecCCHHHHHHHHh-------cCCE
Confidence 689999 9999999999999975225999999999877654432 35699999999999999888877 4699
Q ss_pred EEECcccC
Q 023441 111 LINASGIL 118 (282)
Q Consensus 111 lv~~ag~~ 118 (282)
+|||+|..
T Consensus 71 Vin~~gp~ 78 (386)
T PF03435_consen 71 VINCAGPF 78 (386)
T ss_dssp EEE-SSGG
T ss_pred EEECCccc
Confidence 99999864
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-05 Score=69.46 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=53.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+++||+++||||+|.||..+|++|+++ |.. .+++..|+.+++..+.+... ..|+.+ +.
T Consensus 151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~-~lilv~R~~~rl~~La~el~---------~~~i~~---l~------- 210 (340)
T PRK14982 151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVA-ELLLVARQQERLQELQAELG---------GGKILS---LE------- 210 (340)
T ss_pred cCcCCCEEEEEccChHHHHHHHHHHHhhCCCC-EEEEEcCCHHHHHHHHHHhc---------cccHHh---HH-------
Confidence 4789999999999999999999999865 543 59999998776654333221 122222 22
Q ss_pred HHcCCccEEEECcccC
Q 023441 103 EKYGSLNLLINASGIL 118 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~ 118 (282)
+.+...|++|++++..
T Consensus 211 ~~l~~aDiVv~~ts~~ 226 (340)
T PRK14982 211 EALPEADIVVWVASMP 226 (340)
T ss_pred HHHccCCEEEECCcCC
Confidence 2334689999999975
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.1e-05 Score=74.51 Aligned_cols=79 Identities=24% Similarity=0.292 Sum_probs=58.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC-CcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~-~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|++++|+++|+|+++ +|.++|+.|+++|++ |++.+++. +..+...+.+.+. .+.++..|..+
T Consensus 1 ~~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~--V~~~d~~~~~~~~~~~~~l~~~--~~~~~~~~~~~------------ 63 (450)
T PRK14106 1 MELKGKKVLVVGAGV-SGLALAKFLKKLGAK--VILTDEKEEDQLKEALEELGEL--GIELVLGEYPE------------ 63 (450)
T ss_pred CCcCCCEEEEECCCH-HHHHHHHHHHHCCCE--EEEEeCCchHHHHHHHHHHHhc--CCEEEeCCcch------------
Confidence 467899999999888 999999999999998 88888875 3332222223222 45677888876
Q ss_pred HHcCCccEEEECcccCC
Q 023441 103 EKYGSLNLLINASGILS 119 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~ 119 (282)
+..+..|++|+++|...
T Consensus 64 ~~~~~~d~vv~~~g~~~ 80 (450)
T PRK14106 64 EFLEGVDLVVVSPGVPL 80 (450)
T ss_pred hHhhcCCEEEECCCCCC
Confidence 12247899999999753
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0013 Score=52.37 Aligned_cols=183 Identities=15% Similarity=0.083 Sum_probs=113.4
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
.+.|.||||-.|..++++..++|.+ |+.+.||+.+.... ..+..++.|+.|++++.+.+. ..|
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGHe--VTAivRn~~K~~~~--------~~~~i~q~Difd~~~~a~~l~-------g~D 64 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGHE--VTAIVRNASKLAAR--------QGVTILQKDIFDLTSLASDLA-------GHD 64 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCCe--eEEEEeChHhcccc--------ccceeecccccChhhhHhhhc-------CCc
Confidence 5789999999999999999999998 99999999886532 356788999999998865555 689
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC---
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD--- 186 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~--- 186 (282)
.+|...|... .. .+. -+....+++...++..+. .+++.+...++..-.
T Consensus 65 aVIsA~~~~~-------~~------~~~----------~~~k~~~~li~~l~~agv------~RllVVGGAGSL~id~g~ 115 (211)
T COG2910 65 AVISAFGAGA-------SD------NDE----------LHSKSIEALIEALKGAGV------PRLLVVGGAGSLEIDEGT 115 (211)
T ss_pred eEEEeccCCC-------CC------hhH----------HHHHHHHHHHHHHhhcCC------eeEEEEcCccceEEcCCc
Confidence 9999988762 11 011 011114455555554333 366667665544321
Q ss_pred ----CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc--ccc-------cCCCCCCCCChHHH
Q 023441 187 ----NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR--PFQ-------RNVPEGKLFTKEFS 253 (282)
Q Consensus 187 ----~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~--~~~-------~~~~~~~~~~~~~~ 253 (282)
.|.-+-..|..+++..+. ...|+.+- .+.-.-++|..+..|-.+ .|+ .+..-....+-++.
T Consensus 116 rLvD~p~fP~ey~~~A~~~ae~-L~~Lr~~~-----~l~WTfvSPaa~f~PGerTg~yrlggD~ll~n~~G~SrIS~aDY 189 (211)
T COG2910 116 RLVDTPDFPAEYKPEALAQAEF-LDSLRAEK-----SLDWTFVSPAAFFEPGERTGNYRLGGDQLLVNAKGESRISYADY 189 (211)
T ss_pred eeecCCCCchhHHHHHHHHHHH-HHHHhhcc-----CcceEEeCcHHhcCCccccCceEeccceEEEcCCCceeeeHHHH
Confidence 111112334455544443 34455543 344555578777666322 111 11222355678888
Q ss_pred HHHHHHHHhhc
Q 023441 254 VQKLLNIINNI 264 (282)
Q Consensus 254 a~~~~~~~~~~ 264 (282)
|-+++.-++.+
T Consensus 190 AiA~lDe~E~~ 200 (211)
T COG2910 190 AIAVLDELEKP 200 (211)
T ss_pred HHHHHHHHhcc
Confidence 98888877754
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00023 Score=56.08 Aligned_cols=160 Identities=16% Similarity=0.117 Sum_probs=101.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+.++.+.++|.||||-.|..+.+++++.+---.|+++.|.+..-. .....+.....|++..++.....
T Consensus 14 f~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~-------at~k~v~q~~vDf~Kl~~~a~~~----- 81 (238)
T KOG4039|consen 14 FRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDP-------ATDKVVAQVEVDFSKLSQLATNE----- 81 (238)
T ss_pred HhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCc-------cccceeeeEEechHHHHHHHhhh-----
Confidence 557789999999999999999999999985445888888754322 12345666778888776654433
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
...|+++++-|.... .. ..+..+.+.---.+.+.+++ +..+. ..++.+||.++.
T Consensus 82 --qg~dV~FcaLgTTRg------ka--------GadgfykvDhDyvl~~A~~A----Ke~Gc------k~fvLvSS~GAd 135 (238)
T KOG4039|consen 82 --QGPDVLFCALGTTRG------KA--------GADGFYKVDHDYVLQLAQAA----KEKGC------KTFVLVSSAGAD 135 (238)
T ss_pred --cCCceEEEeeccccc------cc--------ccCceEeechHHHHHHHHHH----HhCCC------eEEEEEeccCCC
Confidence 369999999987641 10 11111222211222223332 22222 289999998765
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~ 234 (282)
....-.|--.|.-++.=.-.|-.+ ++....||++.-+.
T Consensus 136 -----~sSrFlY~k~KGEvE~~v~eL~F~--------~~~i~RPG~ll~~R 173 (238)
T KOG4039|consen 136 -----PSSRFLYMKMKGEVERDVIELDFK--------HIIILRPGPLLGER 173 (238)
T ss_pred -----cccceeeeeccchhhhhhhhcccc--------EEEEecCcceeccc
Confidence 335567989998887665544333 34455999986554
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00033 Score=61.62 Aligned_cols=152 Identities=13% Similarity=0.036 Sum_probs=91.3
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++.++++|||++|.+|..++..|+.++....+++.+++.... ...++.... .. ....+++|+.+..+.++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g-~a~Dl~~~~-~~--~~v~~~td~~~~~~~l~------ 75 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPG-VAADLSHID-TP--AKVTGYADGELWEKALR------ 75 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcc-cccchhhcC-cC--ceEEEecCCCchHHHhC------
Confidence 445699999999999999999999776544599999932221 123333211 12 23446666544333333
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec-ccccc
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA-RVGSI 184 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss-~~~~~ 184 (282)
..|++|+++|... . + ...+.+.+..|+...-.+.+.+.++-.+ .++.++| .....
T Consensus 76 -gaDvVVitaG~~~-------~-~-----~~tR~dll~~N~~i~~~i~~~i~~~~~~----------~iviv~SNPvdv~ 131 (321)
T PTZ00325 76 -GADLVLICAGVPR-------K-P-----GMTRDDLFNTNAPIVRDLVAAVASSAPK----------AIVGIVSNPVNST 131 (321)
T ss_pred -CCCEEEECCCCCC-------C-C-----CCCHHHHHHHHHHHHHHHHHHHHHHCCC----------eEEEEecCcHHHH
Confidence 6899999999853 1 0 1235667888888777777776554221 4555554 22111
Q ss_pred ---------CCCCCCCcccchhhHHHHHH--HHHHHHHHh
Q 023441 185 ---------GDNRLGGWHSYRASKAALNQ--LTKSVSVEF 213 (282)
Q Consensus 185 ---------~~~~~~~~~~Y~~sKa~~~~--l~~~la~e~ 213 (282)
...+++....|+.+ .|++ |-..++..+
T Consensus 132 ~~~~~~~~~~~sg~p~~~viG~g--~LDs~R~r~~la~~l 169 (321)
T PTZ00325 132 VPIAAETLKKAGVYDPRKLFGVT--TLDVVRARKFVAEAL 169 (321)
T ss_pred HHHHHhhhhhccCCChhheeech--hHHHHHHHHHHHHHh
Confidence 12235666788887 3662 344466665
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00017 Score=59.81 Aligned_cols=214 Identities=14% Similarity=0.080 Sum_probs=128.0
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccc-----cCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKN-----RFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~-----~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
-|++||||-||-=|.-+++-|+.+|++ |..+-|....... ..+.+- ..+........|++|...+.++++.+
T Consensus 28 rkvALITGItGQDGSYLaEfLL~KgYe--VHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i 105 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKGYE--VHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTI 105 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCCce--eeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhcc
Confidence 369999999999999999999999999 8888776654332 222221 22346778889999999999999987
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEE-EEeecc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVV-ANLSAR 180 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~i-v~~ss~ 180 (282)
+++-++|-|+... .... .++ -+-+.++...|++.++.++..+-...+- ++. ...|-.
T Consensus 106 -----kPtEiYnLaAQSH------VkvS-Fdl----peYTAeVdavGtLRlLdAi~~c~l~~~V------rfYQAstSEl 163 (376)
T KOG1372|consen 106 -----KPTEVYNLAAQSH------VKVS-FDL----PEYTAEVDAVGTLRLLDAIRACRLTEKV------RFYQASTSEL 163 (376)
T ss_pred -----Cchhhhhhhhhcc------eEEE-eec----ccceeeccchhhhhHHHHHHhcCcccce------eEEecccHhh
Confidence 6777888877653 0111 111 1223567888999999988876543321 122 222334
Q ss_pred ccccC------CCCCCCcccchhhHHHHHHHHHHHHHHhccC-CCCeEEEEEeccc----ccCCCCcc------------
Q 023441 181 VGSIG------DNRLGGWHSYRASKAALNQLTKSVSVEFGRK-KDPVICILLHPGT----VDTDLSRP------------ 237 (282)
Q Consensus 181 ~~~~~------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~-~~~i~v~~i~Pg~----v~t~~~~~------------ 237 (282)
+|-.. ..|..+.++|+++|-+..=++-..+..+... -.+|-+|.=.|.- +.-.+.+.
T Consensus 164 yGkv~e~PQsE~TPFyPRSPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~ 243 (376)
T KOG1372|consen 164 YGKVQEIPQSETTPFYPRSPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKI 243 (376)
T ss_pred cccccCCCcccCCCCCCCChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeE
Confidence 44221 2345567889999976543333333333211 0155555444421 10000000
Q ss_pred cccC-CCCCCCCChHHHHHHHHHHHhhcC
Q 023441 238 FQRN-VPEGKLFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 238 ~~~~-~~~~~~~~~~~~a~~~~~~~~~~~ 265 (282)
...+ .....+-...+..+++|..+...+
T Consensus 244 ~LGNL~a~RDWGhA~dYVEAMW~mLQ~d~ 272 (376)
T KOG1372|consen 244 ELGNLSALRDWGHAGDYVEAMWLMLQQDS 272 (376)
T ss_pred EecchhhhcccchhHHHHHHHHHHHhcCC
Confidence 0001 123456677888999999887554
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0002 Score=57.82 Aligned_cols=78 Identities=17% Similarity=0.251 Sum_probs=47.8
Q ss_pred ccCcEEEEecC----------------CCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCC
Q 023441 26 WKGGVSLVQGA----------------SRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89 (282)
Q Consensus 26 ~~gk~vlItGa----------------s~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls 89 (282)
|+||+||||+| ||..|.++|++++++|++ |+++.....- . .+..+..+ ++.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~--V~li~g~~~~-~--------~p~~~~~i--~v~ 67 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAE--VTLIHGPSSL-P--------PPPGVKVI--RVE 67 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-E--EEEEE-TTS-------------TTEEEE--E-S
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCE--EEEEecCccc-c--------ccccceEE--Eec
Confidence 57899999965 588999999999999998 7777776421 1 02344443 455
Q ss_pred ChhHHHHHHHHHHHHcCCccEEEECcccCC
Q 023441 90 VESTIEASAKSIKEKYGSLNLLINASGILS 119 (282)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~id~lv~~ag~~~ 119 (282)
..+++.+.+.+. ++.-|++|++|++..
T Consensus 68 sa~em~~~~~~~---~~~~Di~I~aAAVsD 94 (185)
T PF04127_consen 68 SAEEMLEAVKEL---LPSADIIIMAAAVSD 94 (185)
T ss_dssp SHHHHHHHHHHH---GGGGSEEEE-SB--S
T ss_pred chhhhhhhhccc---cCcceeEEEecchhh
Confidence 556665555544 445699999999985
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=6e-05 Score=65.49 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=66.3
Q ss_pred EEEEecCCCchhHHHHHHHHh----cCCCcEEEEeecCCCcccccccccccCC----CceeEEEeeCCChhHHHHHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLE----KNDKGCVIATCRNPNGATGLLDLKNRFP----ERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~----~G~~~~vi~~~r~~~~~~~~~~~~~~~~----~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
-++|.||||.-|.-+++++.+ .|.. +-+++||+++++...+...+-. +...++-||.+|++++.+++.+
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~s--lavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~- 83 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLS--LAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQ- 83 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCce--EEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhh-
Confidence 478999999999999999999 6766 9999999999988555443222 1333899999999999999885
Q ss_pred HHHcCCccEEEECcccCC
Q 023441 102 KEKYGSLNLLINASGILS 119 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~ 119 (282)
..+++||+|...
T Consensus 84 ------~~vivN~vGPyR 95 (423)
T KOG2733|consen 84 ------ARVIVNCVGPYR 95 (423)
T ss_pred ------hEEEEeccccce
Confidence 588999999775
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0013 Score=71.89 Aligned_cols=182 Identities=20% Similarity=0.167 Sum_probs=112.7
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.+.|++++|++..++++.+++.+|.++|.. |..+.. .+... .........+.-+.+.-.|..++..+++.+...
T Consensus 1752 ~~~~~~~~v~~d~~~~~~~L~~~L~~~G~~--v~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1825 (2582)
T TIGR02813 1752 KQSGANALVIDDDGHNAGVLAEKLIAAGWQ--VAVVRS-PWVVS---HSASPLASAIASVTLGTIDDTSIEAVIKDIEEK 1825 (2582)
T ss_pred cccCceeEEEcCCcchHHHHHHHHHhCCCe--EEEeec-ccccc---ccccccccccccccccccchHHHHHHHHhhhcc
Confidence 456889999999999999999999999998 443321 11110 111111223444455666678888888888887
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
.++++.+||..+.... .....+.......-..-+...|.+.|.+.+.+...+. ..++.+|...|.+
T Consensus 1826 ~~~~~g~i~l~~~~~~--------~~~~~~~~~~~~~~~~~l~~~f~~ak~~~~~l~~~~~------~~~~~vsr~~G~~ 1891 (2582)
T TIGR02813 1826 TAQIDGFIHLQPQHKS--------VADKVDAIELPEAAKQSLMLAFLFAKLLNVKLATNAR------ASFVTVSRIDGGF 1891 (2582)
T ss_pred ccccceEEEecccccc--------ccccccccccchhhHHHHHHHHHHHHhhchhhccCCC------eEEEEEEecCCcc
Confidence 7889999998775531 0000000001111112344467777777766654333 3888899888766
Q ss_pred CCCCCCCccc-----chhhHHHHHHHHHHHHHHhccCCCCeEEEEEecc
Q 023441 185 GDNRLGGWHS-----YRASKAALNQLTKSVSVEFGRKKDPVICILLHPG 228 (282)
Q Consensus 185 ~~~~~~~~~~-----Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg 228 (282)
+..+...... -....+++.+|+|+++.|+... .+|...+.|.
T Consensus 1892 g~~~~~~~~~~~~~~~~~~~a~l~Gl~Ktl~~E~P~~--~~r~vDl~~~ 1938 (2582)
T TIGR02813 1892 GYSNGDADSGTQQVKAELNQAALAGLTKTLNHEWNAV--FCRALDLAPK 1938 (2582)
T ss_pred ccCCccccccccccccchhhhhHHHHHHhHHHHCCCC--eEEEEeCCCC
Confidence 6211111000 1235789999999999999866 7888887775
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0006 Score=60.24 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=47.5
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCC-----cEEEEeecCCCc--ccc-cccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDK-----GCVIATCRNPNG--ATG-LLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~-----~~vi~~~r~~~~--~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
+++||||+|.+|..++..|+..+.- ..|++.+++... ++. ..++... ......|+....++.
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~----~~~~~~~~~~~~~~~------ 73 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDC----AFPLLKSVVATTDPE------ 73 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhc----cccccCCceecCCHH------
Confidence 5899999999999999999986531 138999986632 222 1111100 001111333222222
Q ss_pred HHHcCCccEEEECcccCC
Q 023441 102 KEKYGSLNLLINASGILS 119 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~ 119 (282)
+.+...|++||+||...
T Consensus 74 -~~l~~aDiVI~tAG~~~ 90 (325)
T cd01336 74 -EAFKDVDVAILVGAMPR 90 (325)
T ss_pred -HHhCCCCEEEEeCCcCC
Confidence 22347999999999864
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00017 Score=66.69 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=52.4
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||+++|||+++ +|.++|+.|+++|+. |++.+++........+.+...+ +.++..+ +...+ .+
T Consensus 1 ~~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~--V~~~d~~~~~~~~~~~~l~~~g--~~~~~~~--~~~~~---~~---- 66 (447)
T PRK02472 1 TEYQNKKVLVLGLAK-SGYAAAKLLHKLGAN--VTVNDGKPFSENPEAQELLEEG--IKVICGS--HPLEL---LD---- 66 (447)
T ss_pred CCcCCCEEEEEeeCH-HHHHHHHHHHHCCCE--EEEEcCCCccchhHHHHHHhcC--CEEEeCC--CCHHH---hc----
Confidence 567899999999986 999999999999998 8888877644332222222222 2222211 11111 11
Q ss_pred HcCCccEEEECcccCC
Q 023441 104 KYGSLNLLINASGILS 119 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~ 119 (282)
..+|.+|+++|+..
T Consensus 67 --~~~d~vV~s~gi~~ 80 (447)
T PRK02472 67 --EDFDLMVKNPGIPY 80 (447)
T ss_pred --CcCCEEEECCCCCC
Confidence 14899999999864
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00023 Score=55.67 Aligned_cols=79 Identities=19% Similarity=0.206 Sum_probs=54.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.++++++++|+|+ |++|.++++.|++.|.. .|++.+|+.++.++..+.... . .+..+.++.++.
T Consensus 15 ~~~~~~~i~iiG~-G~~g~~~a~~l~~~g~~-~v~v~~r~~~~~~~~~~~~~~---~--~~~~~~~~~~~~--------- 78 (155)
T cd01065 15 IELKGKKVLILGA-GGAARAVAYALAELGAA-KIVIVNRTLEKAKALAERFGE---L--GIAIAYLDLEEL--------- 78 (155)
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHhh---c--ccceeecchhhc---------
Confidence 3467899999998 89999999999999732 489999988776554443321 1 122344444332
Q ss_pred HcCCccEEEECcccCC
Q 023441 104 KYGSLNLLINASGILS 119 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~ 119 (282)
....|++|+++....
T Consensus 79 -~~~~Dvvi~~~~~~~ 93 (155)
T cd01065 79 -LAEADLIINTTPVGM 93 (155)
T ss_pred -cccCCEEEeCcCCCC
Confidence 247899999998753
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00028 Score=61.03 Aligned_cols=79 Identities=25% Similarity=0.321 Sum_probs=54.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.++++|+++|+|+ ||+|++++..|+..|.. .|++++|+.++.+++.+...... .+.+ ++ +.. +
T Consensus 119 ~~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~-~V~v~~R~~~~a~~l~~~~~~~~-~~~~---~~----~~~-------~ 181 (278)
T PRK00258 119 VDLKGKRILILGA-GGAARAVILPLLDLGVA-EITIVNRTVERAEELAKLFGALG-KAEL---DL----ELQ-------E 181 (278)
T ss_pred CCCCCCEEEEEcC-cHHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHhhhcc-ceee---cc----cch-------h
Confidence 4688999999997 99999999999999943 49999999887766554443211 1111 11 111 1
Q ss_pred HcCCccEEEECcccCC
Q 023441 104 KYGSLNLLINASGILS 119 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~ 119 (282)
.....|++|+++....
T Consensus 182 ~~~~~DivInaTp~g~ 197 (278)
T PRK00258 182 ELADFDLIINATSAGM 197 (278)
T ss_pred ccccCCEEEECCcCCC
Confidence 1246899999997653
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00042 Score=59.63 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=53.4
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
..++|+++|+|+ ||+|++++..|++.|.+ |++.+|+.++.+.+.+.....+ .+.....| +. .
T Consensus 114 ~~~~k~vliiGa-Gg~g~aia~~L~~~g~~--v~v~~R~~~~~~~la~~~~~~~-~~~~~~~~-----~~---------~ 175 (270)
T TIGR00507 114 LRPNQRVLIIGA-GGAARAVALPLLKADCN--VIIANRTVSKAEELAERFQRYG-EIQAFSMD-----EL---------P 175 (270)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHhhcC-ceEEechh-----hh---------c
Confidence 356899999998 69999999999999976 8899999877766555443322 12222111 10 1
Q ss_pred cCCccEEEECcccC
Q 023441 105 YGSLNLLINASGIL 118 (282)
Q Consensus 105 ~~~id~lv~~ag~~ 118 (282)
....|++|++++..
T Consensus 176 ~~~~DivInatp~g 189 (270)
T TIGR00507 176 LHRVDLIINATSAG 189 (270)
T ss_pred ccCccEEEECCCCC
Confidence 23689999999875
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0026 Score=55.37 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=54.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+|++++|+|+++++|.++++.+...|.+ |+..+++.++.+.+.+ .+.. ..+|..+.+..+++.+.. .. .
T Consensus 144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~--v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~-~~-~ 212 (325)
T cd08253 144 AGETVLVHGGSGAVGHAAVQLARWAGAR--VIATASSAEGAELVRQ----AGAD---AVFNYRAEDLADRILAAT-AG-Q 212 (325)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHH----cCCC---EEEeCCCcCHHHHHHHHc-CC-C
Confidence 5899999999999999999999999987 8888887765443322 2221 124555544444433322 11 3
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|.+++++|.
T Consensus 213 ~~d~vi~~~~~ 223 (325)
T cd08253 213 GVDVIIEVLAN 223 (325)
T ss_pred ceEEEEECCch
Confidence 69999999875
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0028 Score=58.44 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=55.1
Q ss_pred ccccCcEEEEecC----------------CCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEee
Q 023441 24 VKWKGGVSLVQGA----------------SRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87 (282)
Q Consensus 24 ~~~~gk~vlItGa----------------s~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~D 87 (282)
.+|+||++|||+| ||-.|.++|+.++.+|++ |+++.-.... . .+..+.++.+
T Consensus 252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~--VtlI~Gp~~~-~--------~p~~v~~i~V- 319 (475)
T PRK13982 252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAE--VTLISGPVDL-A--------DPQGVKVIHV- 319 (475)
T ss_pred cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCc--EEEEeCCcCC-C--------CCCCceEEEe-
Confidence 3699999999976 578999999999999999 7776643321 0 1234555544
Q ss_pred CCChhHHHHHHHHHHHHcCCccEEEECcccCC
Q 023441 88 LTVESTIEASAKSIKEKYGSLNLLINASGILS 119 (282)
Q Consensus 88 ls~~~~~~~~~~~~~~~~~~id~lv~~ag~~~ 119 (282)
...+++.+++ .+.++ .|++|++|++..
T Consensus 320 -~ta~eM~~av---~~~~~-~Di~I~aAAVaD 346 (475)
T PRK13982 320 -ESARQMLAAV---EAALP-ADIAIFAAAVAD 346 (475)
T ss_pred -cCHHHHHHHH---HhhCC-CCEEEEeccccc
Confidence 3444554444 44444 699999999875
|
|
| >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00071 Score=45.50 Aligned_cols=57 Identities=25% Similarity=0.256 Sum_probs=29.5
Q ss_pred chhHHHhhhhhhhhccc-cccccccC-cEEEEecCCCchhHH--HHHHHHhcCCCcEEEEeecC
Q 023441 4 SLFAFRSIRKVAFTSSA-SASVKWKG-GVSLVQGASRGIGLE--FAKQLLEKNDKGCVIATCRN 63 (282)
Q Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~~~~g-k~vlItGas~giG~a--~a~~la~~G~~~~vi~~~r~ 63 (282)
..+..++-+.|..--.. ...-+++| |+|||+|+|+|.|++ ++..| ..|+. .+.+..+
T Consensus 13 taHP~GC~~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aF-g~gA~--TiGV~fE 73 (78)
T PF12242_consen 13 TAHPVGCARNVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAF-GAGAD--TIGVSFE 73 (78)
T ss_dssp ---HHHHHHHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHH-CC--E--EEEEE--
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHh-cCCCC--EEEEeec
Confidence 34555555555433221 12234477 999999999999999 55555 56665 6655543
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00061 Score=64.20 Aligned_cols=48 Identities=29% Similarity=0.320 Sum_probs=40.0
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccc
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL 73 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~ 73 (282)
..++++|+++|+|+ ||+|++++..|+++|++ |++..|+.++.+.+.+.
T Consensus 374 ~~~~~~k~vlIlGa-GGagrAia~~L~~~G~~--V~i~nR~~e~a~~la~~ 421 (529)
T PLN02520 374 GSPLAGKLFVVIGA-GGAGKALAYGAKEKGAR--VVIANRTYERAKELADA 421 (529)
T ss_pred ccCCCCCEEEEECC-cHHHHHHHHHHHHCCCE--EEEEcCCHHHHHHHHHH
Confidence 34678999999999 69999999999999986 88999987766654443
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0011 Score=60.44 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=55.4
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
-++.||+++|.|+ ||+|+.++++|+.+|.. .++++.|+.++.+.+.+..+ . .. +...+++ .+
T Consensus 177 ~~l~~kkvlviGa-G~~a~~va~~L~~~g~~-~I~V~nRt~~ra~~La~~~~---~-~~-----~~~~~~l-------~~ 238 (414)
T PRK13940 177 DNISSKNVLIIGA-GQTGELLFRHVTALAPK-QIMLANRTIEKAQKITSAFR---N-AS-----AHYLSEL-------PQ 238 (414)
T ss_pred cCccCCEEEEEcC-cHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHHHhc---C-Ce-----EecHHHH-------HH
Confidence 4689999999999 99999999999999975 69999999877655444332 1 11 1112222 22
Q ss_pred HcCCccEEEECcccC
Q 023441 104 KYGSLNLLINASGIL 118 (282)
Q Consensus 104 ~~~~id~lv~~ag~~ 118 (282)
.+...|++|++++..
T Consensus 239 ~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 239 LIKKADIIIAAVNVL 253 (414)
T ss_pred HhccCCEEEECcCCC
Confidence 234689999999975
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0013 Score=56.88 Aligned_cols=80 Identities=20% Similarity=0.133 Sum_probs=54.4
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||+++|.|+ ||.|++++..|++.|.. .|+++.|+.++.+++.+.+... ..+ .. +...+++. +.
T Consensus 122 ~~~~k~vlvlGa-GGaarai~~aL~~~G~~-~i~I~nRt~~ka~~La~~~~~~-~~~--~~--~~~~~~~~-------~~ 187 (282)
T TIGR01809 122 PLAGFRGLVIGA-GGTSRAAVYALASLGVT-DITVINRNPDKLSRLVDLGVQV-GVI--TR--LEGDSGGL-------AI 187 (282)
T ss_pred ccCCceEEEEcC-cHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHHhhhc-Ccc--ee--ccchhhhh-------hc
Confidence 467899999976 89999999999999975 6999999988877655544221 111 11 11112221 12
Q ss_pred cCCccEEEECcccC
Q 023441 105 YGSLNLLINASGIL 118 (282)
Q Consensus 105 ~~~id~lv~~ag~~ 118 (282)
....|++||++...
T Consensus 188 ~~~~DiVInaTp~g 201 (282)
T TIGR01809 188 EKAAEVLVSTVPAD 201 (282)
T ss_pred ccCCCEEEECCCCC
Confidence 24689999999875
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.01 Score=52.42 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=48.5
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCc-----EEEEeecCC--CcccccccccccCCCceeEEEeeCCChhHH----HHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKG-----CVIATCRNP--NGATGLLDLKNRFPERLDVLQLDLTVESTI----EASA 98 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~-----~vi~~~r~~--~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~----~~~~ 98 (282)
++.||||+|.+|..++..|+..|.-. .+++.++++ +.++. ...|++|.... ..+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g--------------~~~Dl~d~~~~~~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEG--------------VVMELQDCAFPLLKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccce--------------eeeehhhhcccccCCcEEe
Confidence 57899999999999999999876432 388888887 43332 22333332100 0000
Q ss_pred HHHHHHcCCccEEEECcccCC
Q 023441 99 KSIKEKYGSLNLLINASGILS 119 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~ 119 (282)
....+.+...|++|+.||...
T Consensus 68 ~~~~~~~~~aDiVVitAG~~~ 88 (323)
T cd00704 68 TDPEEAFKDVDVAILVGAFPR 88 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCC
Confidence 122334457999999999864
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0019 Score=56.04 Aligned_cols=79 Identities=19% Similarity=0.094 Sum_probs=53.8
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++++|+++|.|+ ||.|++++..|++.|.. .|++++|+.++.+.+.+.+......+.+.. .. ++.+ .
T Consensus 124 ~~~~k~vlIlGa-GGaaraia~aL~~~G~~-~I~I~nR~~~ka~~la~~l~~~~~~~~~~~--~~---~~~~-------~ 189 (284)
T PRK12549 124 DASLERVVQLGA-GGAGAAVAHALLTLGVE-RLTIFDVDPARAAALADELNARFPAARATA--GS---DLAA-------A 189 (284)
T ss_pred CccCCEEEEECC-cHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHHHHHhhCCCeEEEe--cc---chHh-------h
Confidence 567899999997 67999999999999985 599999999887776554432212222221 11 1111 1
Q ss_pred cCCccEEEECccc
Q 023441 105 YGSLNLLINASGI 117 (282)
Q Consensus 105 ~~~id~lv~~ag~ 117 (282)
....|++|+++..
T Consensus 190 ~~~aDiVInaTp~ 202 (284)
T PRK12549 190 LAAADGLVHATPT 202 (284)
T ss_pred hCCCCEEEECCcC
Confidence 2358999999644
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.008 Score=53.08 Aligned_cols=118 Identities=12% Similarity=0.007 Sum_probs=66.9
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCc-----EEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHH--HH--HHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKG-----CVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIE--AS--AKS 100 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~-----~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~--~~--~~~ 100 (282)
++.|+|++|.+|..++..|+..|.-. .+++.++++... +......|++|..... .. ...
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~------------~a~g~~~Dl~d~~~~~~~~~~~~~~ 68 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK------------VLEGVVMELMDCAFPLLDGVVPTHD 68 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc------------ccceeEeehhcccchhcCceeccCC
Confidence 47899999999999999999866421 388888866531 1222334444443110 00 002
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeec
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSA 179 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss 179 (282)
..+.+...|++|+.||... .. .+.+.+.+..|+.-. +.+.+.+.+.. .. +.++.+|.
T Consensus 69 ~~~~~~~aDiVVitAG~~~-------~~------~~tr~~ll~~N~~i~----k~i~~~i~~~~~~~-----~iiivvsN 126 (324)
T TIGR01758 69 PAVAFTDVDVAILVGAFPR-------KE------GMERRDLLSKNVKIF----KEQGRALDKLAKKD-----CKVLVVGN 126 (324)
T ss_pred hHHHhCCCCEEEEcCCCCC-------CC------CCcHHHHHHHHHHHH----HHHHHHHHhhCCCC-----eEEEEeCC
Confidence 2344457999999999853 10 122455566665444 44444444431 11 26777765
Q ss_pred cc
Q 023441 180 RV 181 (282)
Q Consensus 180 ~~ 181 (282)
..
T Consensus 127 Pv 128 (324)
T TIGR01758 127 PA 128 (324)
T ss_pred cH
Confidence 33
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0044 Score=56.22 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=56.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+.|+|||||++.++|..+++.|.+.|.+ |++++.+.......... -++...+...-.|.+...+.+.++.++.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~--Vi~~d~~~~~~~~~s~~----~d~~~~~p~p~~d~~~~~~~L~~i~~~~- 75 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHT--VILADSLKYPLSRFSRA----VDGFYTIPSPRWDPDAYIQALLSIVQRE- 75 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCchHHHHHHHh----hhheEEeCCCCCCHHHHHHHHHHHHHHc-
Confidence 3589999999999999999999999987 88888876443211111 1222223223345566666666666664
Q ss_pred CccEEEECcc
Q 023441 107 SLNLLINASG 116 (282)
Q Consensus 107 ~id~lv~~ag 116 (282)
++|++|-...
T Consensus 76 ~id~vIP~~e 85 (389)
T PRK06849 76 NIDLLIPTCE 85 (389)
T ss_pred CCCEEEECCh
Confidence 5899998765
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.011 Score=51.88 Aligned_cols=106 Identities=16% Similarity=0.111 Sum_probs=59.7
Q ss_pred cEEEEecCCCchhHHHHHHHHh-cCCCcEEEEeecCCCcccc-cccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLE-KNDKGCVIATCRNPNGATG-LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~-~G~~~~vi~~~r~~~~~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+.++|+||+|++|.+++..|.. .+.-..+++.+|++. .+. ..++.. . .....+.. .+.+++.+ .+.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~-~-~~~~~i~~--~~~~d~~~-------~l~ 68 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSH-I-PTAVKIKG--FSGEDPTP-------ALE 68 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-Ccceehhhhc-C-CCCceEEE--eCCCCHHH-------HcC
Confidence 4689999999999999998865 343234888888754 221 223221 1 11112222 11122212 223
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhh
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPL 159 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 159 (282)
..|++|.++|....+ . ..-.+.+..|....-.+.+.+.++
T Consensus 69 ~~DiVIitaG~~~~~-------~------~~R~dll~~N~~i~~~ii~~i~~~ 108 (312)
T PRK05086 69 GADVVLISAGVARKP-------G------MDRSDLFNVNAGIVKNLVEKVAKT 108 (312)
T ss_pred CCCEEEEcCCCCCCC-------C------CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999986411 0 123345667766666666655543
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0025 Score=55.21 Aligned_cols=81 Identities=20% Similarity=0.168 Sum_probs=54.7
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc-cCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN-RFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~-~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++||+++|.|+ ||-|++++..|++.|.. .|++..|+.++.+++.+.+. .++.... ...|. .+..+..
T Consensus 124 ~~~~k~vlilGa-GGaarAi~~aL~~~g~~-~i~i~nR~~~ka~~La~~~~~~~~~~~~-~~~~~---~~~~~~~----- 192 (283)
T PRK14027 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQ-KLQVADLDTSRAQALADVINNAVGREAV-VGVDA---RGIEDVI----- 192 (283)
T ss_pred CcCCCeEEEECC-cHHHHHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHhhccCcceE-EecCH---hHHHHHH-----
Confidence 567899999998 88899999999999986 69999999888776655443 2222211 11221 1111111
Q ss_pred HcCCccEEEECcccC
Q 023441 104 KYGSLNLLINASGIL 118 (282)
Q Consensus 104 ~~~~id~lv~~ag~~ 118 (282)
...|++||++...
T Consensus 193 --~~~divINaTp~G 205 (283)
T PRK14027 193 --AAADGVVNATPMG 205 (283)
T ss_pred --hhcCEEEEcCCCC
Confidence 2589999998765
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0036 Score=55.61 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=36.0
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
....+++++|+|.|+ ||+|..+|+.|++.|.. .+.+++++.-+
T Consensus 18 ~Q~~L~~~~VlIiG~-GglGs~va~~La~aGvg-~i~lvD~D~ve 60 (338)
T PRK12475 18 GQRKIREKHVLIVGA-GALGAANAEALVRAGIG-KLTIADRDYVE 60 (338)
T ss_pred HHHhhcCCcEEEECC-CHHHHHHHHHHHHcCCC-EEEEEcCCccc
Confidence 345678899999997 78999999999999974 59999998643
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0033 Score=54.60 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=34.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN 65 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~ 65 (282)
.+++||+++|.|+ ||-+++++-.|+..|.. .|.+..|+.+
T Consensus 120 ~~~~~k~vlvlGa-GGaarAi~~~l~~~g~~-~i~i~nRt~~ 159 (288)
T PRK12749 120 FDIKGKTMVLLGA-GGASTAIGAQGAIEGLK-EIKLFNRRDE 159 (288)
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHCCCC-EEEEEeCCcc
Confidence 4678999999997 55699999999999985 6999999965
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0013 Score=56.98 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=60.1
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
..++|.||+|--|.-+|++|+++|-. ..+.+||..++..+...+ +.....+.+++ +..++++++ +.
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~--~aLAgRs~~kl~~l~~~L---G~~~~~~p~~~--p~~~~~~~~-------~~ 72 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLT--AALAGRSSAKLDALRASL---GPEAAVFPLGV--PAALEAMAS-------RT 72 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCc--hhhccCCHHHHHHHHHhc---CccccccCCCC--HHHHHHHHh-------cc
Confidence 46899999999999999999999988 799999999987765554 44555555555 555555444 68
Q ss_pred cEEEECcccCC
Q 023441 109 NLLINASGILS 119 (282)
Q Consensus 109 d~lv~~ag~~~ 119 (282)
++++||+|...
T Consensus 73 ~VVlncvGPyt 83 (382)
T COG3268 73 QVVLNCVGPYT 83 (382)
T ss_pred eEEEecccccc
Confidence 99999999763
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0023 Score=55.10 Aligned_cols=81 Identities=28% Similarity=0.260 Sum_probs=58.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+.+|++++|.|+ ||-+++++..|++.|.. .|++..|+.++.+++.+...+.+.. ....+..+.+...
T Consensus 122 ~~~~~~~vlilGA-GGAarAv~~aL~~~g~~-~i~V~NRt~~ra~~La~~~~~~~~~--~~~~~~~~~~~~~-------- 189 (283)
T COG0169 122 VDVTGKRVLILGA-GGAARAVAFALAEAGAK-RITVVNRTRERAEELADLFGELGAA--VEAAALADLEGLE-------- 189 (283)
T ss_pred cccCCCEEEEECC-cHHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHhhhcccc--ccccccccccccc--------
Confidence 5567899999986 56799999999999975 6999999999988877776544331 1122333333221
Q ss_pred HcCCccEEEECcccCC
Q 023441 104 KYGSLNLLINASGILS 119 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~ 119 (282)
..|++||++...-
T Consensus 190 ---~~dliINaTp~Gm 202 (283)
T COG0169 190 ---EADLLINATPVGM 202 (283)
T ss_pred ---ccCEEEECCCCCC
Confidence 4799999998764
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0065 Score=51.74 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=54.9
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
.+++|+|||+- |+.++++|.++|.. |+...++....+..... ....+..+.-|.+++.+++.+ .++
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~--v~~s~~t~~~~~~~~~~------g~~~v~~g~l~~~~l~~~l~~-----~~i 66 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIE--ILVTVTTSEGKHLYPIH------QALTVHTGALDPQELREFLKR-----HSI 66 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCe--EEEEEccCCcccccccc------CCceEEECCCCHHHHHHHHHh-----cCC
Confidence 37999999998 99999999999977 88888887654432211 122344666677777666654 379
Q ss_pred cEEEECcccC
Q 023441 109 NLLINASGIL 118 (282)
Q Consensus 109 d~lv~~ag~~ 118 (282)
|.+|+.+...
T Consensus 67 ~~VIDAtHPf 76 (256)
T TIGR00715 67 DILVDATHPF 76 (256)
T ss_pred CEEEEcCCHH
Confidence 9999988743
|
This enzyme was found to be a monomer by gel filtration. |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.016 Score=48.56 Aligned_cols=44 Identities=16% Similarity=0.043 Sum_probs=35.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
-.+++++++|.|+ ||+|..+++.|++.|.. .+++++.+.-...+
T Consensus 7 ~~L~~~~VlVvG~-GGvGs~va~~Lar~GVg-~i~LvD~D~V~~sN 50 (231)
T cd00755 7 EKLRNAHVAVVGL-GGVGSWAAEALARSGVG-KLTLIDFDVVCVSN 50 (231)
T ss_pred HHHhCCCEEEECC-CHHHHHHHHHHHHcCCC-EEEEECCCEECchh
Confidence 3567888999976 58999999999999985 79999887655444
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0053 Score=53.88 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=56.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|+|+++++|.++++.+...|.+ |++++++.++.+.+.+ .+.. ...|..+.+..+.+.+.... .
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~--v~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~--~ 234 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGAT--VIATAGSEDKLERAKE----LGAD---YVIDYRKEDFVREVRELTGK--R 234 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHH----cCCC---eEEecCChHHHHHHHHHhCC--C
Confidence 5789999999999999999999999987 8888887765443322 1222 12466665555554443322 3
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|++++++|.
T Consensus 235 ~~d~~i~~~g~ 245 (342)
T cd08266 235 GVDVVVEHVGA 245 (342)
T ss_pred CCcEEEECCcH
Confidence 69999999884
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.079 Score=46.81 Aligned_cols=157 Identities=10% Similarity=0.031 Sum_probs=92.0
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCc-----EEEEeecCCCc--ccc-cccccccC-C--CceeEEEeeCCChhHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKG-----CVIATCRNPNG--ATG-LLDLKNRF-P--ERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~-----~vi~~~r~~~~--~~~-~~~~~~~~-~--~~v~~~~~Dls~~~~~~~~ 97 (282)
+++.|+|++|.+|..++..|+..|.-. .+++.+.++.. ++. ..++.... . .++.+ .-.+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i---~~~~~------ 73 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI---TDDPN------ 73 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE---ecCcH------
Confidence 478999999999999999999888643 48999986543 433 33333211 0 11211 11122
Q ss_pred HHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCC-CCccceeEEEE
Q 023441 98 AKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGT-GIERDVAVVAN 176 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~-g~~~~~~~iv~ 176 (282)
+.+..-|++|.+||....+ . +.-.+.+..|. -+.+.+.+.+.+... . ..++.
T Consensus 74 -----~~~~daDivvitaG~~~k~----------g---~tR~dll~~N~----~i~~~i~~~i~~~~~~~-----~iiiv 126 (322)
T cd01338 74 -----VAFKDADWALLVGAKPRGP----------G---MERADLLKANG----KIFTAQGKALNDVASRD-----VKVLV 126 (322)
T ss_pred -----HHhCCCCEEEEeCCCCCCC----------C---CcHHHHHHHHH----HHHHHHHHHHHhhCCCC-----eEEEE
Confidence 2224789999999986411 1 11223345554 344555555554331 1 36777
Q ss_pred eeccccccC-----CC-CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeE
Q 023441 177 LSARVGSIG-----DN-RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVI 221 (282)
Q Consensus 177 ~ss~~~~~~-----~~-~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~ 221 (282)
+|-...... .. ..+....|+.++.--.-|...+++.+.-.-..|+
T Consensus 127 vsNPvD~~t~~~~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~ 177 (322)
T cd01338 127 VGNPCNTNALIAMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVK 177 (322)
T ss_pred ecCcHHHHHHHHHHHcCCCChHheEEehHHHHHHHHHHHHHHhCcChhHeE
Confidence 775432211 12 2566678999888877888889888764422344
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0046 Score=54.24 Aligned_cols=75 Identities=29% Similarity=0.415 Sum_probs=50.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|+|+++++|.++++.+...|.+ |+.++++.++.+.+.+ .+.. .++ |. +++.+.+. +..
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~--v~~~~~~~~~~~~~~~----~~~~-~~~--~~---~~~~~~~~----~~~ 225 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGAR--VIAVTRSPEKLKILKE----LGAD-YVI--DG---SKFSEDVK----KLG 225 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCe--EEEEeCCHHHHHHHHH----cCCc-EEE--ec---HHHHHHHH----hcc
Confidence 4789999999999999999999999987 8888887655443321 1221 111 22 11222222 223
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|++++|+|.
T Consensus 226 ~~d~v~~~~g~ 236 (332)
T cd08259 226 GADVVIELVGS 236 (332)
T ss_pred CCCEEEECCCh
Confidence 79999999885
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0065 Score=48.32 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=33.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN 63 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~ 63 (282)
.++.||+++|.|++.-.|..+++.|.++|++ |.++.|+
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~--V~v~~r~ 77 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNAT--VTVCHSK 77 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCE--EEEEECC
Confidence 5799999999999766899999999999987 8887775
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0015 Score=53.59 Aligned_cols=44 Identities=27% Similarity=0.398 Sum_probs=37.6
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
..+++||+++|+|.. .+|..+++.|.+.|++ |++.+++.+..+.
T Consensus 23 ~~~l~gk~v~I~G~G-~vG~~~A~~L~~~G~~--Vvv~D~~~~~~~~ 66 (200)
T cd01075 23 TDSLEGKTVAVQGLG-KVGYKLAEHLLEEGAK--LIVADINEEAVAR 66 (200)
T ss_pred CCCCCCCEEEEECCC-HHHHHHHHHHHHCCCE--EEEEcCCHHHHHH
Confidence 457899999999995 8999999999999988 8888888765443
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0091 Score=43.38 Aligned_cols=39 Identities=28% Similarity=0.277 Sum_probs=32.0
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP 64 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~ 64 (282)
.++++||++||.|| |.+|..=++.|++.|++ |++.+.+.
T Consensus 2 ~l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~--v~vis~~~ 40 (103)
T PF13241_consen 2 FLDLKGKRVLVVGG-GPVAARKARLLLEAGAK--VTVISPEI 40 (103)
T ss_dssp EE--TT-EEEEEEE-SHHHHHHHHHHCCCTBE--EEEEESSE
T ss_pred EEEcCCCEEEEECC-CHHHHHHHHHHHhCCCE--EEEECCch
Confidence 36889999999999 88999999999999988 88888774
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0069 Score=53.65 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=52.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|+|+++++|.++++.+...|++ |+.++++.++.+.+.+.+ +.. .+ .|..+.++..+.+..... +
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~--Vi~~~~~~~~~~~~~~~l---Ga~-~v--i~~~~~~~~~~~i~~~~~--~ 220 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCY--VVGSAGSDEKVDLLKNKL---GFD-DA--FNYKEEPDLDAALKRYFP--N 220 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHhc---CCc-ee--EEcCCcccHHHHHHHhCC--C
Confidence 5899999999999999998777778987 888888776654433312 222 11 233322233333333221 3
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|+++.+.|.
T Consensus 221 gvd~v~d~~g~ 231 (338)
T cd08295 221 GIDIYFDNVGG 231 (338)
T ss_pred CcEEEEECCCH
Confidence 69999998874
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0064 Score=52.79 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=36.7
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA 67 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~ 67 (282)
..++.||+++|+|. |++|+++++.|...|.+ |++.+|+.++.
T Consensus 146 ~~~l~gk~v~IiG~-G~iG~avA~~L~~~G~~--V~v~~R~~~~~ 187 (287)
T TIGR02853 146 DFTIHGSNVMVLGF-GRTGMTIARTFSALGAR--VFVGARSSADL 187 (287)
T ss_pred CCCCCCCEEEEEcC-hHHHHHHHHHHHHCCCE--EEEEeCCHHHH
Confidence 35789999999999 66999999999999987 99999987654
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.013 Score=51.84 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=49.2
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC-
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG- 106 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~- 106 (282)
|+++||+||+||+|...++-....|+. +++.....++.+ .+.+.+.... .|..+.+ +.+.+++..+
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~--~v~~~~s~~k~~----~~~~lGAd~v---i~y~~~~----~~~~v~~~t~g 209 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGAT--VVAVVSSSEKLE----LLKELGADHV---INYREED----FVEQVRELTGG 209 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCc--EEEEecCHHHHH----HHHhcCCCEE---EcCCccc----HHHHHHHHcCC
Confidence 899999999999999999777777875 555555554433 2222233222 2333333 3344443332
Q ss_pred -CccEEEECcccC
Q 023441 107 -SLNLLINASGIL 118 (282)
Q Consensus 107 -~id~lv~~ag~~ 118 (282)
.+|+++...|..
T Consensus 210 ~gvDvv~D~vG~~ 222 (326)
T COG0604 210 KGVDVVLDTVGGD 222 (326)
T ss_pred CCceEEEECCCHH
Confidence 499999999964
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.014 Score=51.99 Aligned_cols=43 Identities=21% Similarity=0.156 Sum_probs=36.5
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
....++.++|+|.|+ ||+|..+++.|++.|.. .+.+++++.-+
T Consensus 18 ~Q~~L~~~~VlVvG~-GglGs~va~~La~aGvg-~i~lvD~D~Ve 60 (339)
T PRK07688 18 GQQKLREKHVLIIGA-GALGTANAEMLVRAGVG-KVTIVDRDYVE 60 (339)
T ss_pred HHHHhcCCcEEEECC-CHHHHHHHHHHHHcCCC-eEEEEeCCccC
Confidence 345678899999999 89999999999999984 69999987644
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0063 Score=56.69 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=51.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.++++|+++|+|+ ||+|++++..|++.|++ |++.+|+.++.+.+.+.. +.. . .+..+ ..
T Consensus 328 ~~~~~k~vlIiGa-GgiG~aia~~L~~~G~~--V~i~~R~~~~~~~la~~~---~~~--~--~~~~~---~~-------- 386 (477)
T PRK09310 328 IPLNNQHVAIVGA-GGAAKAIATTLARAGAE--LLIFNRTKAHAEALASRC---QGK--A--FPLES---LP-------- 386 (477)
T ss_pred CCcCCCEEEEEcC-cHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHh---ccc--e--echhH---hc--------
Confidence 4678999999996 79999999999999986 888899876655433322 111 1 11111 11
Q ss_pred HcCCccEEEECcccC
Q 023441 104 KYGSLNLLINASGIL 118 (282)
Q Consensus 104 ~~~~id~lv~~ag~~ 118 (282)
.+...|++|+|....
T Consensus 387 ~l~~~DiVInatP~g 401 (477)
T PRK09310 387 ELHRIDIIINCLPPS 401 (477)
T ss_pred ccCCCCEEEEcCCCC
Confidence 124689999998654
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.02 Score=47.05 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=36.0
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA 67 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~ 67 (282)
....+++++++|.| .||+|..+++.|++.|.. .+.+++++.-+.
T Consensus 15 ~q~kl~~~~VlviG-~GglGs~ia~~La~~Gv~-~i~lvD~d~ve~ 58 (202)
T TIGR02356 15 GQQRLLNSHVLIIG-AGGLGSPAALYLAGAGVG-TIVIVDDDHVDL 58 (202)
T ss_pred HHHHhcCCCEEEEC-CCHHHHHHHHHHHHcCCC-eEEEecCCEEcc
Confidence 34567889999998 579999999999999974 699998875443
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.013 Score=50.87 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=53.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+|++++|+|+++++|.++++.+...|++ |+.++++.+..+.+.+ .+.. ...|..+.+...++.+. ... +
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~--v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~-~~~-~ 207 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGAR--VIATAGSEEKLEACRA----LGAD---VAINYRTEDFAEEVKEA-TGG-R 207 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCCE--EEEEcCCHHHHHHHHH----cCCC---EEEeCCchhHHHHHHHH-hCC-C
Confidence 5789999999999999999999999987 8888887665443322 2221 12344443333332222 111 3
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|.+++++|.
T Consensus 208 ~~d~vi~~~g~ 218 (323)
T cd05276 208 GVDVILDMVGG 218 (323)
T ss_pred CeEEEEECCch
Confidence 69999999884
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.017 Score=52.15 Aligned_cols=41 Identities=17% Similarity=0.057 Sum_probs=34.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
..+++++|+|.|+ ||+|..+++.|++.|.. .+++++++.-+
T Consensus 131 ~~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg-~i~lvD~d~v~ 171 (376)
T PRK08762 131 RRLLEARVLLIGA-GGLGSPAALYLAAAGVG-TLGIVDHDVVD 171 (376)
T ss_pred HHHhcCcEEEECC-CHHHHHHHHHHHHcCCC-eEEEEeCCEec
Confidence 4578889999966 79999999999999985 79999988543
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.023 Score=50.70 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=51.4
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
-+|+++||.||++|+|.+.++-....|+. .+++++..+..+ +..+.+.. ...|..+++ +.+.+.+.. .
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~--~v~t~~s~e~~~----l~k~lGAd---~vvdy~~~~-~~e~~kk~~--~ 223 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAI--KVVTACSKEKLE----LVKKLGAD---EVVDYKDEN-VVELIKKYT--G 223 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCc--EEEEEcccchHH----HHHHcCCc---EeecCCCHH-HHHHHHhhc--C
Confidence 35889999999999999999666666743 555555555443 22223322 224666644 333333222 4
Q ss_pred CCccEEEECcccC
Q 023441 106 GSLNLLINASGIL 118 (282)
Q Consensus 106 ~~id~lv~~ag~~ 118 (282)
+++|+++-|.|..
T Consensus 224 ~~~DvVlD~vg~~ 236 (347)
T KOG1198|consen 224 KGVDVVLDCVGGS 236 (347)
T ss_pred CCccEEEECCCCC
Confidence 6799999999974
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.048 Score=46.70 Aligned_cols=46 Identities=17% Similarity=0.063 Sum_probs=36.5
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
....+++.+|+|.|+ ||+|..+|+.|++.|.. .+++++.+.....+
T Consensus 24 ~~~kL~~s~VlVvG~-GGVGs~vae~Lar~GVg-~itLiD~D~V~~sN 69 (268)
T PRK15116 24 ALQLFADAHICVVGI-GGVGSWAAEALARTGIG-AITLIDMDDVCVTN 69 (268)
T ss_pred HHHHhcCCCEEEECc-CHHHHHHHHHHHHcCCC-EEEEEeCCEecccc
Confidence 345678889999976 58999999999999964 59998887665544
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.01 Score=52.20 Aligned_cols=80 Identities=14% Similarity=0.175 Sum_probs=51.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.++||+|+++++|.++++.....|++ |+.++++.++.+.+. +.+.... .|..+.+...+.+..... +
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~--Vi~~~~s~~~~~~~~----~lGa~~v---i~~~~~~~~~~~~~~~~~--~ 206 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCK--VVGAAGSDEKVAYLK----KLGFDVA---FNYKTVKSLEETLKKASP--D 206 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHH----HcCCCEE---EeccccccHHHHHHHhCC--C
Confidence 5889999999999999988777777886 888888776544332 2233211 233332233333333321 3
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|+++.+.|.
T Consensus 207 gvdvv~d~~G~ 217 (325)
T TIGR02825 207 GYDCYFDNVGG 217 (325)
T ss_pred CeEEEEECCCH
Confidence 59999998874
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.03 Score=49.12 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=50.5
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC----CCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF----PERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~----~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++.|.|+ |++|.+++..|+..|....|++.+++++..+.....+... +....+.. .+.++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~~~~----------- 65 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GDYSD----------- 65 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CCHHH-----------
Confidence 36788996 8999999999999995334999999998876543332211 12222221 22221
Q ss_pred cCCccEEEECcccCC
Q 023441 105 YGSLNLLINASGILS 119 (282)
Q Consensus 105 ~~~id~lv~~ag~~~ 119 (282)
+...|++|+++|...
T Consensus 66 l~~aDIVIitag~~~ 80 (306)
T cd05291 66 CKDADIVVITAGAPQ 80 (306)
T ss_pred hCCCCEEEEccCCCC
Confidence 136899999999864
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.029 Score=47.58 Aligned_cols=45 Identities=18% Similarity=0.139 Sum_probs=37.7
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
...++.++|+|.|+ ||+|..+++.|++.|.. ++.+++.+.-+..+
T Consensus 27 Q~~L~~~~VliiG~-GglGs~va~~La~~Gvg-~i~lvD~D~ve~sN 71 (245)
T PRK05690 27 QEKLKAARVLVVGL-GGLGCAASQYLAAAGVG-TLTLVDFDTVSLSN 71 (245)
T ss_pred HHHhcCCeEEEECC-CHHHHHHHHHHHHcCCC-EEEEEcCCEECcch
Confidence 35678899999999 99999999999999985 78888887655443
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.012 Score=51.77 Aligned_cols=75 Identities=23% Similarity=0.178 Sum_probs=52.7
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++.|++++|.|+ |.+|..+++.|...|.. .|++++|+.++...+.+.. +. .+ .+.+++.+.+.
T Consensus 175 ~l~~~~V~ViGa-G~iG~~~a~~L~~~g~~-~V~v~~r~~~ra~~la~~~---g~--~~-----~~~~~~~~~l~----- 237 (311)
T cd05213 175 NLKGKKVLVIGA-GEMGELAAKHLAAKGVA-EITIANRTYERAEELAKEL---GG--NA-----VPLDELLELLN----- 237 (311)
T ss_pred CccCCEEEEECc-HHHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHc---CC--eE-----EeHHHHHHHHh-----
Confidence 368999999987 99999999999998764 5888999887765443332 22 11 12233333332
Q ss_pred cCCccEEEECcccC
Q 023441 105 YGSLNLLINASGIL 118 (282)
Q Consensus 105 ~~~id~lv~~ag~~ 118 (282)
..|++|.+++..
T Consensus 238 --~aDvVi~at~~~ 249 (311)
T cd05213 238 --EADVVISATGAP 249 (311)
T ss_pred --cCCEEEECCCCC
Confidence 579999999975
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.012 Score=55.25 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=54.3
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++.+++++|.|+ |++|..++++|...|.. .|++..|+.++.+.+.+... +..+.+ ...++..+++
T Consensus 263 ~l~~kkVlVIGA-G~mG~~~a~~L~~~G~~-~V~V~nRs~era~~La~~~~--g~~i~~-----~~~~dl~~al------ 327 (519)
T PLN00203 263 SHASARVLVIGA-GKMGKLLVKHLVSKGCT-KMVVVNRSEERVAALREEFP--DVEIIY-----KPLDEMLACA------ 327 (519)
T ss_pred CCCCCEEEEEeC-HHHHHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHhC--CCceEe-----ecHhhHHHHH------
Confidence 388999999999 99999999999999974 59999999887665544332 112222 1222333333
Q ss_pred cCCccEEEECcccC
Q 023441 105 YGSLNLLINASGIL 118 (282)
Q Consensus 105 ~~~id~lv~~ag~~ 118 (282)
...|++|.+++..
T Consensus 328 -~~aDVVIsAT~s~ 340 (519)
T PLN00203 328 -AEADVVFTSTSSE 340 (519)
T ss_pred -hcCCEEEEccCCC
Confidence 2579999998764
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.017 Score=52.07 Aligned_cols=77 Identities=21% Similarity=0.076 Sum_probs=53.3
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
+.+++++|.|+ |.+|+..++.+.+.|++ |++.+|+.++.+.+.... +.. +..+..+.+.+.+.+
T Consensus 165 l~~~~VlViGa-G~vG~~aa~~a~~lGa~--V~v~d~~~~~~~~l~~~~---g~~---v~~~~~~~~~l~~~l------- 228 (370)
T TIGR00518 165 VEPGDVTIIGG-GVVGTNAAKMANGLGAT--VTILDINIDRLRQLDAEF---GGR---IHTRYSNAYEIEDAV------- 228 (370)
T ss_pred CCCceEEEEcC-CHHHHHHHHHHHHCCCe--EEEEECCHHHHHHHHHhc---Cce---eEeccCCHHHHHHHH-------
Confidence 46678999987 79999999999999987 999999876654332222 221 223455555554443
Q ss_pred CCccEEEECcccC
Q 023441 106 GSLNLLINASGIL 118 (282)
Q Consensus 106 ~~id~lv~~ag~~ 118 (282)
...|++|++++..
T Consensus 229 ~~aDvVI~a~~~~ 241 (370)
T TIGR00518 229 KRADLLIGAVLIP 241 (370)
T ss_pred ccCCEEEEccccC
Confidence 3579999998653
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.012 Score=53.92 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=52.0
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++.|++++|.|+ |.+|..+++.|...|.. .|++.+|+.++.....+.. +.. +.+.++..+.+
T Consensus 179 ~~~~~~vlViGa-G~iG~~~a~~L~~~G~~-~V~v~~r~~~ra~~la~~~---g~~-------~~~~~~~~~~l------ 240 (423)
T PRK00045 179 DLSGKKVLVIGA-GEMGELVAKHLAEKGVR-KITVANRTLERAEELAEEF---GGE-------AIPLDELPEAL------ 240 (423)
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHHCCCC-eEEEEeCCHHHHHHHHHHc---CCc-------EeeHHHHHHHh------
Confidence 478999999987 99999999999999974 4889999887655433332 211 11222332222
Q ss_pred cCCccEEEECcccC
Q 023441 105 YGSLNLLINASGIL 118 (282)
Q Consensus 105 ~~~id~lv~~ag~~ 118 (282)
...|++|.++|..
T Consensus 241 -~~aDvVI~aT~s~ 253 (423)
T PRK00045 241 -AEADIVISSTGAP 253 (423)
T ss_pred -ccCCEEEECCCCC
Confidence 3579999998864
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.015 Score=51.99 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=51.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+|++|++|...++.....|++ |+.++++.++.+.+.+. .+.... .|-.+.+++.+.+.+... +
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~--Vi~~~~~~~k~~~~~~~---lGa~~v---i~~~~~~~~~~~i~~~~~--~ 227 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCY--VVGSAGSSQKVDLLKNK---LGFDEA---FNYKEEPDLDAALKRYFP--E 227 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCE--EEEEcCCHHHHHHHHHh---cCCCEE---EECCCcccHHHHHHHHCC--C
Confidence 5899999999999999998777778987 88887777654433211 233211 233322233333333221 3
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.+.|.
T Consensus 228 gvD~v~d~vG~ 238 (348)
T PLN03154 228 GIDIYFDNVGG 238 (348)
T ss_pred CcEEEEECCCH
Confidence 59999999884
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.045 Score=50.57 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=50.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|.+.+|+++|+|.+ ++|.++|+.|+++|+. |.+.+.+..... ..+ +.+....+.++..+..+ . ..
T Consensus 1 ~~~~~~~~~v~G~g-~~G~~~a~~l~~~g~~--v~~~d~~~~~~~-~~~-l~~~~~gi~~~~g~~~~-~----~~----- 65 (445)
T PRK04308 1 MTFQNKKILVAGLG-GTGISMIAYLRKNGAE--VAAYDAELKPER-VAQ-IGKMFDGLVFYTGRLKD-A----LD----- 65 (445)
T ss_pred CCCCCCEEEEECCC-HHHHHHHHHHHHCCCE--EEEEeCCCCchh-HHH-HhhccCCcEEEeCCCCH-H----HH-----
Confidence 45789999999986 8999999999999987 888776554311 111 11111234443322221 1 11
Q ss_pred HcCCccEEEECcccCC
Q 023441 104 KYGSLNLLINASGILS 119 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~ 119 (282)
...|.+|.+.|+.+
T Consensus 66 --~~~d~vv~spgi~~ 79 (445)
T PRK04308 66 --NGFDILALSPGISE 79 (445)
T ss_pred --hCCCEEEECCCCCC
Confidence 25899999999974
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.017 Score=51.20 Aligned_cols=79 Identities=10% Similarity=0.117 Sum_probs=49.8
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCC-CcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKND-KGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~-~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
|+++||+||++++|.+.++.....|+ + |+.+++++++.+.+.+. .+... + .|..+ +++.+.+.+... +
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~--Vi~~~~s~~~~~~~~~~---lGa~~-v--i~~~~-~~~~~~i~~~~~--~ 223 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSR--VVGICGSDEKCQLLKSE---LGFDA-A--INYKT-DNVAERLRELCP--E 223 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCE--EEEEcCCHHHHHHHHHh---cCCcE-E--EECCC-CCHHHHHHHHCC--C
Confidence 38999999999999998877667787 5 88888877655433332 23321 1 23332 223333333222 3
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.+.|.
T Consensus 224 gvd~vid~~g~ 234 (345)
T cd08293 224 GVDVYFDNVGG 234 (345)
T ss_pred CceEEEECCCc
Confidence 69999998874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.015 Score=50.32 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=33.9
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR 62 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r 62 (282)
..+++||+++|.|+++-.|+.++..|.++|+. |+++.|
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gat--Vtv~~~ 191 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANAT--VTICHS 191 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCE--EEEEeC
Confidence 35789999999999999999999999999986 777765
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.037 Score=42.69 Aligned_cols=76 Identities=17% Similarity=0.265 Sum_probs=52.7
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc-ccccc---cCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL-LDLKN---RFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~-~~~~~---~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.+.|+|++|.+|..+|..|...+.--.+++.+++++.++.. .++.. ..+.+..+.. .+.+++
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~~~~----------- 67 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDYEAL----------- 67 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSGGGG-----------
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---cccccc-----------
Confidence 57899999999999999999998655699999998766542 23221 1111222222 444433
Q ss_pred CCccEEEECcccCC
Q 023441 106 GSLNLLINASGILS 119 (282)
Q Consensus 106 ~~id~lv~~ag~~~ 119 (282)
...|++|..+|...
T Consensus 68 ~~aDivvitag~~~ 81 (141)
T PF00056_consen 68 KDADIVVITAGVPR 81 (141)
T ss_dssp TTESEEEETTSTSS
T ss_pred ccccEEEEeccccc
Confidence 26899999999864
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.06 Score=40.49 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=55.4
Q ss_pred EEEEecCCCchhHHHHHHHHh-cCCCcEEEEeecCCCccc--ccccccc-------------cCCCceeEEEeeCCChhH
Q 023441 30 VSLVQGASRGIGLEFAKQLLE-KNDKGCVIATCRNPNGAT--GLLDLKN-------------RFPERLDVLQLDLTVEST 93 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~-~G~~~~vi~~~r~~~~~~--~~~~~~~-------------~~~~~v~~~~~Dls~~~~ 93 (282)
+++|.|++|-+|+.+++.+.+ .|.+ .+...+|+.+... ..-+... ..-.+ .-+-.|+|.++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~-lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~-~DVvIDfT~p~~ 79 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFE-LVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE-ADVVIDFTNPDA 79 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEE-EEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH--SEEEEES-HHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcE-EEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc-CCEEEEcCChHH
Confidence 689999999999999999999 5554 3555566662111 1111110 00012 226689999999
Q ss_pred HHHHHHHHHHHcCCccEEEECcccC
Q 023441 94 IEASAKSIKEKYGSLNLLINASGIL 118 (282)
Q Consensus 94 ~~~~~~~~~~~~~~id~lv~~ag~~ 118 (282)
+...++.+.+. ++..++-.+|..
T Consensus 80 ~~~~~~~~~~~--g~~~ViGTTG~~ 102 (124)
T PF01113_consen 80 VYDNLEYALKH--GVPLVIGTTGFS 102 (124)
T ss_dssp HHHHHHHHHHH--T-EEEEE-SSSH
T ss_pred hHHHHHHHHhC--CCCEEEECCCCC
Confidence 99999888877 788899888874
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.026 Score=46.69 Aligned_cols=45 Identities=18% Similarity=0.071 Sum_probs=37.3
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT 68 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~ 68 (282)
....++.++++|.|+ ||+|..+++.|++.|.. .+++.+.+.-+..
T Consensus 22 ~q~~L~~~~V~ViG~-GglGs~ia~~La~~Gvg-~i~lvD~D~ve~s 66 (212)
T PRK08644 22 LLEKLKKAKVGIAGA-GGLGSNIAVALARSGVG-NLKLVDFDVVEPS 66 (212)
T ss_pred HHHHHhCCCEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCEeccc
Confidence 346678899999995 89999999999999985 7999988854443
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.098 Score=46.08 Aligned_cols=80 Identities=18% Similarity=0.222 Sum_probs=54.5
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc-ccccccCC--CceeEEEeeCCChhHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL-LDLKNRFP--ERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~-~~~~~~~~--~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.-.++++.|+|+ |.+|..+|..|+..|.--.+++.+++++.++.. .++....+ .++... . .+.++
T Consensus 3 ~~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~--~~~~~-------- 70 (315)
T PRK00066 3 KKQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-A--GDYSD-------- 70 (315)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-e--CCHHH--------
Confidence 345789999998 999999999999998743599999998877653 33332211 122222 1 22222
Q ss_pred HHHcCCccEEEECcccCC
Q 023441 102 KEKYGSLNLLINASGILS 119 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~ 119 (282)
+..-|++|..+|...
T Consensus 71 ---~~~adivIitag~~~ 85 (315)
T PRK00066 71 ---CKDADLVVITAGAPQ 85 (315)
T ss_pred ---hCCCCEEEEecCCCC
Confidence 236899999999864
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.032 Score=49.99 Aligned_cols=43 Identities=14% Similarity=0.019 Sum_probs=36.4
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
....+++++|+|.|+ ||+|..+++.|++.|.. .+++++.+.-+
T Consensus 22 ~q~~L~~~~VlivG~-GGlGs~~a~~La~~Gvg-~i~lvD~D~ve 64 (355)
T PRK05597 22 GQQSLFDAKVAVIGA-GGLGSPALLYLAGAGVG-HITIIDDDTVD 64 (355)
T ss_pred HHHHHhCCeEEEECC-CHHHHHHHHHHHHcCCC-eEEEEeCCEEc
Confidence 345678899999998 89999999999999986 79998887643
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.016 Score=53.03 Aligned_cols=75 Identities=23% Similarity=0.261 Sum_probs=52.2
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++.|++++|.|+ |.+|..+++.|...|.. .|++.+|+.++.....+.. +.. .+. .+++.+++.
T Consensus 177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~-~V~v~~rs~~ra~~la~~~---g~~--~i~-----~~~l~~~l~----- 239 (417)
T TIGR01035 177 SLKGKKALLIGA-GEMGELVAKHLLRKGVG-KILIANRTYERAEDLAKEL---GGE--AVK-----FEDLEEYLA----- 239 (417)
T ss_pred CccCCEEEEECC-hHHHHHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHc---CCe--Eee-----HHHHHHHHh-----
Confidence 578999999997 99999999999999943 4999999887654433322 221 221 123333333
Q ss_pred cCCccEEEECcccC
Q 023441 105 YGSLNLLINASGIL 118 (282)
Q Consensus 105 ~~~id~lv~~ag~~ 118 (282)
..|++|.+++..
T Consensus 240 --~aDvVi~aT~s~ 251 (417)
T TIGR01035 240 --EADIVISSTGAP 251 (417)
T ss_pred --hCCEEEECCCCC
Confidence 579999998764
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.058 Score=44.29 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=34.0
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP 64 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~ 64 (282)
.++++||+++|.|| |.+|...++.|.+.|++ |++++++.
T Consensus 5 ~l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~--V~VIs~~~ 43 (202)
T PRK06718 5 MIDLSNKRVVIVGG-GKVAGRRAITLLKYGAH--IVVISPEL 43 (202)
T ss_pred EEEcCCCEEEEECC-CHHHHHHHHHHHHCCCe--EEEEcCCC
Confidence 46899999999998 88999999999999988 77777654
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.036 Score=44.51 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=51.9
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCC--c-eeEEEeeCCChhHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE--R-LDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~--~-v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+++++|-.||..|. ++..+++++.+ |+.++++++..+...+.....+. + +.++.+|+.+.. .
T Consensus 22 ~~~~~vLd~G~G~G~---~~~~l~~~~~~--v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---------~ 87 (188)
T PRK14968 22 KKGDRVLEVGTGSGI---VAIVAAKNGKK--VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF---------R 87 (188)
T ss_pred cCCCEEEEEccccCH---HHHHHHhhcce--EEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc---------c
Confidence 467899999987765 45555666766 99999987766544433332222 2 888888875421 1
Q ss_pred HHcCCccEEEECcccCC
Q 023441 103 EKYGSLNLLINASGILS 119 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~ 119 (282)
+ .++|.++.|.....
T Consensus 88 ~--~~~d~vi~n~p~~~ 102 (188)
T PRK14968 88 G--DKFDVILFNPPYLP 102 (188)
T ss_pred c--cCceEEEECCCcCC
Confidence 1 26899999887653
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.12 Score=45.47 Aligned_cols=35 Identities=20% Similarity=0.099 Sum_probs=30.9
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP 64 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~ 64 (282)
++.|+|++|.+|..++..|+..|....|++++|++
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~ 36 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPK 36 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 68999999999999999999998654599999965
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.057 Score=50.44 Aligned_cols=84 Identities=21% Similarity=0.174 Sum_probs=56.3
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCC-------------h
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV-------------E 91 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~-------------~ 91 (282)
...+.+++|.|+ |.+|...+..+...|+. |++.+++..+++.... .+ ..++..|..+ .
T Consensus 161 ~vp~akVlViGa-G~iGl~Aa~~ak~lGA~--V~v~d~~~~rle~a~~----lG--a~~v~v~~~e~g~~~~gYa~~~s~ 231 (511)
T TIGR00561 161 KVPPAKVLVIGA-GVAGLAAIGAANSLGAI--VRAFDTRPEVKEQVQS----MG--AEFLELDFKEEGGSGDGYAKVMSE 231 (511)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHH----cC--CeEEeccccccccccccceeecCH
Confidence 345689999996 89999999999999987 8888888876543332 12 2344444321 2
Q ss_pred hHHHHHHHHHHHHcCCccEEEECccc
Q 023441 92 STIEASAKSIKEKYGSLNLLINASGI 117 (282)
Q Consensus 92 ~~~~~~~~~~~~~~~~id~lv~~ag~ 117 (282)
+..++..+...++....|++|+++-+
T Consensus 232 ~~~~~~~~~~~e~~~~~DIVI~Tali 257 (511)
T TIGR00561 232 EFIAAEMELFAAQAKEVDIIITTALI 257 (511)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECccc
Confidence 33444444445555679999999944
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.032 Score=49.60 Aligned_cols=77 Identities=13% Similarity=0.172 Sum_probs=50.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|+|+ |++|...+.-+...|++ .|++.++++++++.+.+ .+.... .|..+. ++.+. .+..+
T Consensus 169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~-~Vi~~~~~~~~~~~a~~----lGa~~v---i~~~~~-~~~~~----~~~~g 234 (343)
T PRK09880 169 QGKRVFVSGV-GPIGCLIVAAVKTLGAA-EIVCADVSPRSLSLARE----MGADKL---VNPQND-DLDHY----KAEKG 234 (343)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCc-EEEEEeCCHHHHHHHHH----cCCcEE---ecCCcc-cHHHH----hccCC
Confidence 6899999986 89999998777778874 48888888776654333 233221 243332 23222 22225
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.++|.
T Consensus 235 ~~D~vid~~G~ 245 (343)
T PRK09880 235 YFDVSFEVSGH 245 (343)
T ss_pred CCCEEEECCCC
Confidence 69999999985
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.024 Score=57.16 Aligned_cols=80 Identities=18% Similarity=0.124 Sum_probs=60.7
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCC------------cEEEEeecCCCcccccccccccCCCceeEEEeeCCChhH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDK------------GCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVEST 93 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~------------~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~ 93 (282)
-+.|+++|.|+ |.+|...++.|++.... ..|.+++++.+.++++.+.. .++..+++|++|.++
T Consensus 567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----~~~~~v~lDv~D~e~ 641 (1042)
T PLN02819 567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI----ENAEAVQLDVSDSES 641 (1042)
T ss_pred ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc----CCCceEEeecCCHHH
Confidence 35689999997 99999999999986431 13777888876665444332 256789999999988
Q ss_pred HHHHHHHHHHHcCCccEEEECccc
Q 023441 94 IEASAKSIKEKYGSLNLLINASGI 117 (282)
Q Consensus 94 ~~~~~~~~~~~~~~id~lv~~ag~ 117 (282)
+.++++ .+|++|++...
T Consensus 642 L~~~v~-------~~DaVIsalP~ 658 (1042)
T PLN02819 642 LLKYVS-------QVDVVISLLPA 658 (1042)
T ss_pred HHHhhc-------CCCEEEECCCc
Confidence 877665 48999999874
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.081 Score=49.54 Aligned_cols=84 Identities=20% Similarity=0.153 Sum_probs=53.9
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCCh------------hH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE------------ST 93 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~------------~~ 93 (282)
..+.+|+|+|+ |.+|...+..+...|+. |++.++++++++...+ .|.+ ++..|..+. ++
T Consensus 163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~--V~a~D~~~~rle~aes----lGA~--~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 163 VPPAKVLVIGA-GVAGLAAIGAAGSLGAI--VRAFDTRPEVAEQVES----MGAE--FLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHH----cCCe--EEEeccccccccccchhhhcchh
Confidence 46889999986 67888888888889986 9999998877654333 2333 333333221 12
Q ss_pred HHHHHHHH-HHHcCCccEEEECcccC
Q 023441 94 IEASAKSI-KEKYGSLNLLINASGIL 118 (282)
Q Consensus 94 ~~~~~~~~-~~~~~~id~lv~~ag~~ 118 (282)
..+...+. .+..+..|++|.++|..
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~p 259 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIP 259 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCC
Confidence 22222222 22235699999999985
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.15 Score=44.81 Aligned_cols=120 Identities=16% Similarity=0.121 Sum_probs=68.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++.|+|++|.+|.++|..|+..|.-..+++.+.++ ......++.... ....+..+. .+ ++ ..+.+..-|
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~DL~~~~-~~~~i~~~~-~~-~~-------~~~~~~daD 69 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAADLSHIP-TAASVKGFS-GE-EG-------LENALKGAD 69 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEchhhcCC-cCceEEEec-CC-Cc-------hHHHcCCCC
Confidence 36899999999999999999887533599999887 222233333211 111222111 01 11 122334799
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++|.++|....+ -.+-.+.+..|+. +.+.+.+.+.+.... ..++++|-...
T Consensus 70 ivvitaG~~~~~-------------g~~R~dll~~N~~----I~~~i~~~i~~~~p~-----~iiivvsNPvD 120 (312)
T TIGR01772 70 VVVIPAGVPRKP-------------GMTRDDLFNVNAG----IVKDLVAAVAESCPK-----AMILVITNPVN 120 (312)
T ss_pred EEEEeCCCCCCC-------------CccHHHHHHHhHH----HHHHHHHHHHHhCCC-----eEEEEecCchh
Confidence 999999986411 0122344666655 444444444443222 37777777654
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.022 Score=52.72 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=42.2
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEA 96 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~ 96 (282)
+++|.|+ |.+|.++++.|.++|.. |++++++++..+...+. ..+.++..|.++...+++
T Consensus 2 ~viIiG~-G~ig~~~a~~L~~~g~~--v~vid~~~~~~~~~~~~-----~~~~~~~gd~~~~~~l~~ 60 (453)
T PRK09496 2 KIIIVGA-GQVGYTLAENLSGENND--VTVIDTDEERLRRLQDR-----LDVRTVVGNGSSPDVLRE 60 (453)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCc--EEEEECCHHHHHHHHhh-----cCEEEEEeCCCCHHHHHH
Confidence 6888988 99999999999999988 88999988765443221 134555566665554443
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.022 Score=50.01 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=50.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.++||+||++++|.++++.....|++ |+.++++.++.+.+.+ .+.. .+ .|-.+.+ +.+.+..... +
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~--vi~~~~s~~~~~~l~~----~Ga~-~v--i~~~~~~-~~~~v~~~~~--~ 210 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCK--VIGCAGSDDKVAWLKE----LGFD-AV--FNYKTVS-LEEALKEAAP--D 210 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHH----cCCC-EE--EeCCCcc-HHHHHHHHCC--C
Confidence 5899999999999999988777778987 8888887766544333 2332 11 2333332 2222222211 3
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.+.|.
T Consensus 211 gvd~vld~~g~ 221 (329)
T cd08294 211 GIDCYFDNVGG 221 (329)
T ss_pred CcEEEEECCCH
Confidence 59999988874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.023 Score=49.54 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=36.0
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA 67 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~ 67 (282)
..++.|++++|.|. |++|+.++..|.+.|++ |++.+|+.+..
T Consensus 147 ~~~l~g~kvlViG~-G~iG~~~a~~L~~~Ga~--V~v~~r~~~~~ 188 (296)
T PRK08306 147 PITIHGSNVLVLGF-GRTGMTLARTLKALGAN--VTVGARKSAHL 188 (296)
T ss_pred CCCCCCCEEEEECC-cHHHHHHHHHHHHCCCE--EEEEECCHHHH
Confidence 35678999999997 67999999999999987 99999986543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.034 Score=49.06 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=51.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|+|.. |+|...++.....|++ |+..+|++++++...++ +.... .|.+|.+..+++-.
T Consensus 166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~--Via~~~~~~K~e~a~~l----GAd~~---i~~~~~~~~~~~~~------- 228 (339)
T COG1064 166 PGKWVAVVGAG-GLGHMAVQYAKAMGAE--VIAITRSEEKLELAKKL----GADHV---INSSDSDALEAVKE------- 228 (339)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcCCe--EEEEeCChHHHHHHHHh----CCcEE---EEcCCchhhHHhHh-------
Confidence 38999999999 9998877666669987 99999999987755554 22222 23334443333222
Q ss_pred CccEEEECcc
Q 023441 107 SLNLLINASG 116 (282)
Q Consensus 107 ~id~lv~~ag 116 (282)
..|+++.+++
T Consensus 229 ~~d~ii~tv~ 238 (339)
T COG1064 229 IADAIIDTVG 238 (339)
T ss_pred hCcEEEECCC
Confidence 2899999998
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.045 Score=42.12 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=30.9
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
+++|.|+ ||+|.++++.|++.|.. .+.+.+.+.-...+
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~-~i~ivD~d~v~~~n 38 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVG-KITLIDFDTVELSN 38 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCC-EEEEEcCCCcCcch
Confidence 4788887 89999999999999985 68888887655433
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.034 Score=46.94 Aligned_cols=79 Identities=24% Similarity=0.216 Sum_probs=51.4
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.+|++++|+|+++ +|.++++.+...|.+ |+.+++++++.+.+.+ .+.. . ..|..+.+....+. ....
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~~--v~~~~~~~~~~~~~~~----~g~~-~--~~~~~~~~~~~~~~---~~~~ 199 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKAAGAR--VIVTDRSDEKLELAKE----LGAD-H--VIDYKEEDLEEELR---LTGG 199 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCCe--EEEEcCCHHHHHHHHH----hCCc-e--eccCCcCCHHHHHH---HhcC
Confidence 3688999999998 999999888888976 8888888755443322 1221 1 12333333333333 2223
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+.+|+++++++.
T Consensus 200 ~~~d~vi~~~~~ 211 (271)
T cd05188 200 GGADVVIDAVGG 211 (271)
T ss_pred CCCCEEEECCCC
Confidence 469999999875
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.021 Score=42.10 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=51.8
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccE
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNL 110 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~ 110 (282)
++|.|++ .+|..+++.|.+.+.+ |++++++++..+...+. .+.++..|.++++.++++-- .+.|.
T Consensus 1 vvI~G~g-~~~~~i~~~L~~~~~~--vvvid~d~~~~~~~~~~------~~~~i~gd~~~~~~l~~a~i------~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYG-RIGREIAEQLKEGGID--VVVIDRDPERVEELREE------GVEVIYGDATDPEVLERAGI------EKADA 65 (116)
T ss_dssp EEEES-S-HHHHHHHHHHHHTTSE--EEEEESSHHHHHHHHHT------TSEEEES-TTSHHHHHHTTG------GCESE
T ss_pred eEEEcCC-HHHHHHHHHHHhCCCE--EEEEECCcHHHHHHHhc------ccccccccchhhhHHhhcCc------cccCE
Confidence 5677774 7999999999997756 99999988775543322 37799999999998876522 26777
Q ss_pred EEECcc
Q 023441 111 LINASG 116 (282)
Q Consensus 111 lv~~ag 116 (282)
++....
T Consensus 66 vv~~~~ 71 (116)
T PF02254_consen 66 VVILTD 71 (116)
T ss_dssp EEEESS
T ss_pred EEEccC
Confidence 777665
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.06 Score=45.06 Aligned_cols=44 Identities=20% Similarity=0.107 Sum_probs=35.6
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT 68 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~ 68 (282)
...+++++|+|.| .||+|.++++.|++.|.. .+++++.+.-+..
T Consensus 16 q~~L~~~~VlivG-~GglGs~va~~La~~Gvg-~i~lvD~D~ve~s 59 (228)
T cd00757 16 QEKLKNARVLVVG-AGGLGSPAAEYLAAAGVG-KLGLVDDDVVELS 59 (228)
T ss_pred HHHHhCCcEEEEC-CCHHHHHHHHHHHHcCCC-EEEEEcCCEEcCc
Confidence 4567888999998 579999999999999985 7888877654433
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.12 Score=38.55 Aligned_cols=76 Identities=13% Similarity=0.110 Sum_probs=43.4
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEE-eecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIA-TCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~-~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++.|.|+||-+|..+++.|+++- ...++. .++.....+......+.... ..-+.++-.+.+.+ .++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp-~~e~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~ 67 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHP-DFELVALVSSSRSAGKPLSEVFPHPKG-FEDLSVEDADPEEL-----------SDV 67 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS-TEEEEEEEESTTTTTSBHHHTTGGGTT-TEEEBEEETSGHHH-----------TTE
T ss_pred CEEEECCCCHHHHHHHHHHhcCC-CccEEEeeeeccccCCeeehhcccccc-ccceeEeecchhHh-----------hcC
Confidence 58899999999999999999964 334444 44444233333333321111 11111111444433 379
Q ss_pred cEEEECcccC
Q 023441 109 NLLINASGIL 118 (282)
Q Consensus 109 d~lv~~ag~~ 118 (282)
|++|.|.+..
T Consensus 68 Dvvf~a~~~~ 77 (121)
T PF01118_consen 68 DVVFLALPHG 77 (121)
T ss_dssp SEEEE-SCHH
T ss_pred CEEEecCchh
Confidence 9999998753
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.062 Score=40.97 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=30.7
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
.++++|.|+ |++|..+++.|++.|.. .+++++.+.-+..+
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~-~i~lvD~d~v~~~n 41 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVG-KITLVDDDIVEPSN 41 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTS-EEEEEESSBB-GGG
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCC-ceeecCCcceeecc
Confidence 467887775 68999999999999985 79998887655443
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.034 Score=50.32 Aligned_cols=76 Identities=21% Similarity=0.166 Sum_probs=56.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
-++++|++||.|+ |-+|.-+|++|+++|.. .|+++.|+.++++.+.+.+. ++....+++...+.
T Consensus 174 ~~L~~~~vlvIGA-Gem~~lva~~L~~~g~~-~i~IaNRT~erA~~La~~~~----------~~~~~l~el~~~l~---- 237 (414)
T COG0373 174 GSLKDKKVLVIGA-GEMGELVAKHLAEKGVK-KITIANRTLERAEELAKKLG----------AEAVALEELLEALA---- 237 (414)
T ss_pred cccccCeEEEEcc-cHHHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHHHhC----------CeeecHHHHHHhhh----
Confidence 4489999999997 46889999999999975 69999999988776555442 23333444444443
Q ss_pred HcCCccEEEECcccC
Q 023441 104 KYGSLNLLINASGIL 118 (282)
Q Consensus 104 ~~~~id~lv~~ag~~ 118 (282)
..|++|.++|..
T Consensus 238 ---~~DvVissTsa~ 249 (414)
T COG0373 238 ---EADVVISSTSAP 249 (414)
T ss_pred ---hCCEEEEecCCC
Confidence 679999998865
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.053 Score=43.43 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=30.2
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT 68 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~ 68 (282)
+++|.|+ ||+|..+++.|++.|.. ++++.+.+.-+..
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg-~i~lvD~D~v~~s 37 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVG-NLKLVDFDVVEPS 37 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCEEcCc
Confidence 3678885 89999999999999985 6999988874443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.021 Score=43.39 Aligned_cols=56 Identities=23% Similarity=0.153 Sum_probs=44.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChh
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVES 92 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~ 92 (282)
+++++++.|.+ .|.++|+.|++.|.+ |+.++.++...+.+.+. .+.++..|+.+++
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G~~--ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~ 71 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESGFD--VIVIDINEKAVEKAKKL------GLNAFVDDLFNPN 71 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCCCE--EEEEECCHHHHHHHHHh------CCeEEECcCCCCC
Confidence 56789999988 788889999999987 99999999865433322 4678888888765
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.085 Score=46.66 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=48.4
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCc-----EEEEeecCCC--cccc-cccccccC-C--CceeEEEeeCCChhHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKG-----CVIATCRNPN--GATG-LLDLKNRF-P--ERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~-----~vi~~~r~~~--~~~~-~~~~~~~~-~--~~v~~~~~Dls~~~~~~~~ 97 (282)
..+.|+|++|.+|..++..|+..|.-. .+++.+.++. +++. ..++.... . .++.+ .
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i-~------------ 71 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI-T------------ 71 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE-e------------
Confidence 478999999999999999999877543 5999998653 2333 22332211 0 11111 1
Q ss_pred HHHHHHHcCCccEEEECcccCC
Q 023441 98 AKSIKEKYGSLNLLINASGILS 119 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~~ 119 (282)
..-.+.+..-|++|.+||...
T Consensus 72 -~~~y~~~~daDiVVitaG~~~ 92 (326)
T PRK05442 72 -DDPNVAFKDADVALLVGARPR 92 (326)
T ss_pred -cChHHHhCCCCEEEEeCCCCC
Confidence 111233347899999999864
|
|
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.073 Score=45.88 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=51.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHh-cCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLE-KNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~-~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.|.|++|++|+|..|.-.. |+|+ +|.+ |+..+-..++..-+.+.+.- +.+ .|-..+ ++.+.+.++.-
T Consensus 150 ~GetvvVSaAaGaVGsvvg-QiAKlkG~r--VVGiaGg~eK~~~l~~~lGf--D~~----idyk~~-d~~~~L~~a~P-- 217 (340)
T COG2130 150 AGETVVVSAAAGAVGSVVG-QIAKLKGCR--VVGIAGGAEKCDFLTEELGF--DAG----IDYKAE-DFAQALKEACP-- 217 (340)
T ss_pred CCCEEEEEecccccchHHH-HHHHhhCCe--EEEecCCHHHHHHHHHhcCC--cee----eecCcc-cHHHHHHHHCC--
Confidence 4899999999999998766 6666 5766 99988887776544443320 111 233322 34444443332
Q ss_pred CCccEEEECcccC
Q 023441 106 GSLNLLINASGIL 118 (282)
Q Consensus 106 ~~id~lv~~ag~~ 118 (282)
..||+.+-|.|.-
T Consensus 218 ~GIDvyfeNVGg~ 230 (340)
T COG2130 218 KGIDVYFENVGGE 230 (340)
T ss_pred CCeEEEEEcCCch
Confidence 2599999999963
|
|
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.034 Score=48.28 Aligned_cols=80 Identities=14% Similarity=0.258 Sum_probs=50.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|+|+++++|.++++.+...|++ |+.+.+++++.+.+ . ..+.+. ..+..+.+....+. ..... .
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~--v~~~~~~~~~~~~~-~---~~g~~~---~~~~~~~~~~~~~~-~~~~~-~ 207 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGAR--VFTTAGSDEKCAAC-E---ALGADI---AINYREEDFVEVVK-AETGG-K 207 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCCE--EEEEeCCHHHHHHH-H---HcCCcE---EEecCchhHHHHHH-HHcCC-C
Confidence 5789999999999999999999999987 88888877654432 1 222211 12223322222222 21111 2
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|.+++++|.
T Consensus 208 ~~d~~i~~~~~ 218 (325)
T TIGR02824 208 GVDVILDIVGG 218 (325)
T ss_pred CeEEEEECCch
Confidence 59999998874
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.041 Score=45.29 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=32.5
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN 65 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~ 65 (282)
.++++||+++|.||+ .+|..-++.|++.|++ |++++.+..
T Consensus 4 ~l~l~gk~vlVvGgG-~va~rk~~~Ll~~ga~--VtVvsp~~~ 43 (205)
T TIGR01470 4 FANLEGRAVLVVGGG-DVALRKARLLLKAGAQ--LRVIAEELE 43 (205)
T ss_pred EEEcCCCeEEEECcC-HHHHHHHHHHHHCCCE--EEEEcCCCC
Confidence 357899999999974 5688889999999998 777776554
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >COG3007 Uncharacterized paraquat-inducible protein B [Function unknown] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.094 Score=44.86 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=101.3
Q ss_pred cEEEEecCCCchhHH--HHHHHHhcCCCcEEEEeecC--CCccc---------c-cccccccCCCceeEEEeeCCChhHH
Q 023441 29 GVSLVQGASRGIGLE--FAKQLLEKNDKGCVIATCRN--PNGAT---------G-LLDLKNRFPERLDVLQLDLTVESTI 94 (282)
Q Consensus 29 k~vlItGas~giG~a--~a~~la~~G~~~~vi~~~r~--~~~~~---------~-~~~~~~~~~~~v~~~~~Dls~~~~~ 94 (282)
|+|||.|+|+|.|++ ++..|- .|+. -+.+.-. ..+.+ . ..+...+.|--.+-+..|.=+.+-=
T Consensus 42 KkVLviGaSsGyGLa~RIsaaFG-~gAd--TiGVffE~pgte~~~gtagwyn~~~f~~~A~~kGlyAksingDaFS~e~k 118 (398)
T COG3007 42 KKVLVIGASSGYGLAARISAAFG-PGAD--TIGVFFERPGTERKPGTAGWYNNAAFKKFAKQKGLYAKSINGDAFSDEMK 118 (398)
T ss_pred ceEEEEecCCcccHHHHHHHHhC-CCCc--eeeEEeecCCccCCCcchhhhHHHHHHHHHHhcCceeeecccchhhHHHH
Confidence 899999999999988 444454 4554 3333221 11100 0 1111112233456677888777777
Q ss_pred HHHHHHHHHHcCCccEEEECcccCC--CCCCCCCc-------------------------ccccccchhhhhhhhhhhhc
Q 023441 95 EASAKSIKEKYGSLNLLINASGILS--IPNVLQPE-------------------------TTLNKVEKSSLMLAYEVNAV 147 (282)
Q Consensus 95 ~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~n~~ 147 (282)
++.++.+++.||++|.+|+.-+... .|.--+.. ..+...+.+++..+..|.=-
T Consensus 119 ~kvIe~Ik~~~g~vDlvvYSlAsp~Rk~pktgev~~SalKpIg~a~~~~~ldt~kd~i~e~~lepAseqEI~~Tv~VMGG 198 (398)
T COG3007 119 QKVIEAIKQDFGKVDLVVYSLASPRRKHPKTGEVFRSALKPIGEAVSGRTLDTEKDVIIEATLEPASEQEIADTVAVMGG 198 (398)
T ss_pred HHHHHHHHHhhccccEEEEeccCccccCCCcchhhHhhhcchhhhccccccccccceeeeeecccccHHHHHHHHHhhCc
Confidence 8889999999999999998765331 11100000 01122233444444443222
Q ss_pred HHHH-HHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEE
Q 023441 148 GPIL-VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICIL 224 (282)
Q Consensus 148 ~~~~-~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~ 224 (282)
--|- .+++++..- ....+..-+.+|-++.-+..+ .--...-+.+|.-++.-++.+...++..+-+.+|..
T Consensus 199 eDWq~WidaLl~ad------vlaeg~kTiAfsYiG~~iT~~-IYw~GtiG~AK~DLd~~~~~inekLa~~gG~A~vsV 269 (398)
T COG3007 199 EDWQMWIDALLEAD------VLAEGAKTIAFSYIGEKITHP-IYWDGTIGRAKKDLDQKSLAINEKLAALGGGARVSV 269 (398)
T ss_pred chHHHHHHHHHhcc------ccccCceEEEEEecCCccccc-eeeccccchhhhcHHHHHHHHHHHHHhcCCCeeeee
Confidence 2221 223322210 111223666677665443311 122346689999999999999999998865555553
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.37 Score=42.27 Aligned_cols=118 Identities=16% Similarity=0.075 Sum_probs=68.3
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++.|+|++|.+|.++|..|+.+|.-..+++.+.+ .++. ..++.... ....+..+. .+ ++ +.+.+...
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~-~~~~i~~~~-~~-~~-------~y~~~~da 69 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHIN-TPAKVTGYL-GP-EE-------LKKALKGA 69 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCC-CcceEEEec-CC-Cc-------hHHhcCCC
Confidence 5789999999999999999988854459999988 3332 33333221 111111110 11 11 12223478
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
|++|.+||....| -+.-.+.+..|..-.-.+.+.+.++ ... ..++++|-..
T Consensus 70 DivvitaG~~~k~-------------g~tR~dll~~N~~i~~~i~~~i~~~---~p~------a~vivvtNPv 120 (310)
T cd01337 70 DVVVIPAGVPRKP-------------GMTRDDLFNINAGIVRDLATAVAKA---CPK------ALILIISNPV 120 (310)
T ss_pred CEEEEeCCCCCCC-------------CCCHHHHHHHHHHHHHHHHHHHHHh---CCC------eEEEEccCch
Confidence 9999999986411 0123345666665555555554443 112 3777777765
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.074 Score=45.93 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=33.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR 62 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r 62 (282)
.+++||+++|+|.+.-+|+.++..|..+|+. |+++.+
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gat--Vtv~~s 190 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNAS--VTILHS 190 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCe--EEEEeC
Confidence 4789999999999999999999999999988 776654
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.041 Score=41.61 Aligned_cols=86 Identities=17% Similarity=0.263 Sum_probs=52.2
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEE-eecCCCcccccccccccC--------CCceeEEEeeCCChhHHHHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIA-TCRNPNGATGLLDLKNRF--------PERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~-~~r~~~~~~~~~~~~~~~--------~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
++-|.|+ |-+|.++++.|.+.|.. |.. .+|+....+.+..+.... -.+..++-+-+.| +.+..++++
T Consensus 12 ~I~iIGa-GrVG~~La~aL~~ag~~--v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpD-daI~~va~~ 87 (127)
T PF10727_consen 12 KIGIIGA-GRVGTALARALARAGHE--VVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPD-DAIAEVAEQ 87 (127)
T ss_dssp EEEEECT-SCCCCHHHHHHHHTTSE--EEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-C-CHHHHHHHH
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCe--EEEEEeCCcccccccccccccccccccccccccCCEEEEEech-HHHHHHHHH
Confidence 6778888 88899999999999986 544 467665544433332211 1244555556666 478888888
Q ss_pred HHHH--cCCccEEEECcccCC
Q 023441 101 IKEK--YGSLNLLINASGILS 119 (282)
Q Consensus 101 ~~~~--~~~id~lv~~ag~~~ 119 (282)
+... +.+=.+++||.|...
T Consensus 88 La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 88 LAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp HHCC--S-TT-EEEES-SS--
T ss_pred HHHhccCCCCcEEEECCCCCh
Confidence 8775 434579999999874
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.055 Score=47.05 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=50.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++++++|+|+++++|.++++.+...|.+ ++.++++.++.+.+.+ .+.. .++ |....+ +.+.+..... ..
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~--v~~~~~~~~~~~~~~~----~g~~-~~~--~~~~~~-~~~~~~~~~~-~~ 212 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGAT--VIATTRTSEKRDALLA----LGAA-HVI--VTDEED-LVAEVLRITG-GK 212 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCE--EEEEcCCHHHHHHHHH----cCCC-EEE--ecCCcc-HHHHHHHHhC-CC
Confidence 5789999999999999999999999987 8888887655443321 2221 122 222222 2222222211 12
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|.+++++|.
T Consensus 213 ~~d~vi~~~~~ 223 (328)
T cd08268 213 GVDVVFDPVGG 223 (328)
T ss_pred CceEEEECCch
Confidence 59999998875
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.05 Score=47.68 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=50.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|.|+++++|.++++.+.+.|.+ |+.++++.++.+.+.+.. +.. .++ |..+.+..++ +..... +
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~--vi~~~~~~~~~~~~~~~~---g~~-~~~--~~~~~~~~~~-v~~~~~--~ 213 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGAR--VVGIAGSDEKCRWLVEEL---GFD-AAI--NYKTPDLAEA-LKEAAP--D 213 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHhhc---CCc-eEE--ecCChhHHHH-HHHhcc--C
Confidence 5789999999999999999888889987 888888776544332212 221 111 2233222222 222221 4
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|+++.++|.
T Consensus 214 ~~d~vi~~~g~ 224 (329)
T cd05288 214 GIDVYFDNVGG 224 (329)
T ss_pred CceEEEEcchH
Confidence 69999998874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.031 Score=46.77 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=34.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCC-cEEEEeecCC
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDK-GCVIATCRNP 64 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~-~~vi~~~r~~ 64 (282)
.++++++++|.|+ |+.|.+++.+|++.|.. -+|++++|+.
T Consensus 21 ~~l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 21 KKIEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 4789999999999 89999999999999962 1499999983
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.078 Score=45.40 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=50.0
Q ss_pred EEEecCCCchhHHHHHHHHhcC--CCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 31 SLVQGASRGIGLEFAKQLLEKN--DKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G--~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
+.|+|++|.+|..++..|+..| ....|++.+.++++++.....++...........-.++ +..+. +...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~--d~~~~-------~~~a 71 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITD--DPYEA-------FKDA 71 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECC--chHHH-------hCCC
Confidence 4689998899999999999998 32349999999987766443333221111001111121 12222 2368
Q ss_pred cEEEECcccCC
Q 023441 109 NLLINASGILS 119 (282)
Q Consensus 109 d~lv~~ag~~~ 119 (282)
|++|..+|...
T Consensus 72 DiVv~t~~~~~ 82 (263)
T cd00650 72 DVVIITAGVGR 82 (263)
T ss_pred CEEEECCCCCC
Confidence 99999999865
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.049 Score=41.91 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=34.6
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN 63 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~ 63 (282)
..+++||+++|.|.+.-.|+.++..|.++|+. |..+.++
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gat--V~~~~~~ 61 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGAT--VYSCDWK 61 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEeCCC
Confidence 46899999999999999999999999999987 7776653
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.088 Score=45.77 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=34.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP 64 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~ 64 (282)
.+++||++.|.|.++-+|+.++..|.++|+. |+++.|..
T Consensus 155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gat--Vtv~~~~t 193 (301)
T PRK14194 155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCS--VTVVHSRS 193 (301)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCE--EEEECCCC
Confidence 5789999999999999999999999999998 87776544
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.057 Score=49.90 Aligned_cols=78 Identities=22% Similarity=0.171 Sum_probs=57.8
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
...++++|.|+ |.+|..+++.|.+.|.. |++++++++..+...+. +..+.++..|.++.+.++++- .
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~--v~vid~~~~~~~~~~~~----~~~~~~i~gd~~~~~~L~~~~------~ 295 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYS--VKLIERDPERAEELAEE----LPNTLVLHGDGTDQELLEEEG------I 295 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCe--EEEEECCHHHHHHHHHH----CCCCeEEECCCCCHHHHHhcC------C
Confidence 45789999999 99999999999999988 89999888765443332 234677888999887765532 1
Q ss_pred CCccEEEECcc
Q 023441 106 GSLNLLINASG 116 (282)
Q Consensus 106 ~~id~lv~~ag 116 (282)
.+.|.++.+..
T Consensus 296 ~~a~~vi~~~~ 306 (453)
T PRK09496 296 DEADAFIALTN 306 (453)
T ss_pred ccCCEEEECCC
Confidence 35677776554
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.1 Score=47.20 Aligned_cols=80 Identities=13% Similarity=0.188 Sum_probs=51.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCCh-hHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE-STIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~-~~~~~~~~~~~~~~ 105 (282)
.|++++|.|+ +++|...+..+...|+. +|+.++++.++++.+.+ .+... + .|..+. +.+.+.+.+...
T Consensus 198 ~g~~VlV~G~-G~vG~~a~q~ak~~G~~-~Vi~~~~~~~r~~~a~~----~Ga~~-~--i~~~~~~~~~~~~v~~~~~-- 266 (381)
T PLN02740 198 AGSSVAIFGL-GAVGLAVAEGARARGAS-KIIGVDINPEKFEKGKE----MGITD-F--INPKDSDKPVHERIREMTG-- 266 (381)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCC-cEEEEcCChHHHHHHHH----cCCcE-E--EecccccchHHHHHHHHhC--
Confidence 4889999986 99999998887788873 38888888776554332 23321 2 243332 123333333322
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+.+|+++.++|.
T Consensus 267 ~g~dvvid~~G~ 278 (381)
T PLN02740 267 GGVDYSFECAGN 278 (381)
T ss_pred CCCCEEEECCCC
Confidence 259999999995
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.079 Score=48.46 Aligned_cols=42 Identities=31% Similarity=0.334 Sum_probs=36.3
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA 67 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~ 67 (282)
...+.||+++|+|. |.||+.+++.|...|++ |++.++++.+.
T Consensus 207 ~~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~--ViV~d~dp~ra 248 (425)
T PRK05476 207 NVLIAGKVVVVAGY-GDVGKGCAQRLRGLGAR--VIVTEVDPICA 248 (425)
T ss_pred cCCCCCCEEEEECC-CHHHHHHHHHHHhCCCE--EEEEcCCchhh
Confidence 34578999999997 68999999999999987 99998887654
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.095 Score=36.56 Aligned_cols=37 Identities=32% Similarity=0.379 Sum_probs=30.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR 62 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r 62 (282)
.++.+|+++|.|+ |+.|+.++..|.+.|.. .|.+.+|
T Consensus 19 ~~~~~~~v~i~G~-G~~g~~~a~~l~~~~~~-~v~v~~r 55 (86)
T cd05191 19 KSLKGKTVVVLGA-GEVGKGIAKLLADEGGK-KVVLCDR 55 (86)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCC-EEEEEcC
Confidence 5688999999999 99999999999998543 3666655
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.21 Score=39.19 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=51.4
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccc-----c-ccCC----CceeEEEeeCCChh
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL-----K-NRFP----ERLDVLQLDLTVES 92 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~-----~-~~~~----~~v~~~~~Dls~~~ 92 (282)
.++++||+++|.|| |.+|...++.|.+.|++ |++++.+. .+++.++ . +.+. .... +..-.|+.+
T Consensus 8 ~l~l~~~~vlVvGG-G~va~rka~~Ll~~ga~--V~VIsp~~--~~~l~~l~~i~~~~~~~~~~dl~~a~-lViaaT~d~ 81 (157)
T PRK06719 8 MFNLHNKVVVIIGG-GKIAYRKASGLKDTGAF--VTVVSPEI--CKEMKELPYITWKQKTFSNDDIKDAH-LIYAATNQH 81 (157)
T ss_pred EEEcCCCEEEEECC-CHHHHHHHHHHHhCCCE--EEEEcCcc--CHHHHhccCcEEEecccChhcCCCce-EEEECCCCH
Confidence 46889999999997 45799999999999998 65554332 2211111 0 0110 1222 233356777
Q ss_pred HHHHHHHHHHHHcCCccEEEECccc
Q 023441 93 TIEASAKSIKEKYGSLNLLINASGI 117 (282)
Q Consensus 93 ~~~~~~~~~~~~~~~id~lv~~ag~ 117 (282)
++...+....+.. +++|++.-
T Consensus 82 e~N~~i~~~a~~~----~~vn~~d~ 102 (157)
T PRK06719 82 AVNMMVKQAAHDF----QWVNVVSD 102 (157)
T ss_pred HHHHHHHHHHHHC----CcEEECCC
Confidence 7777777666542 36666654
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.27 Score=45.24 Aligned_cols=76 Identities=11% Similarity=0.114 Sum_probs=52.0
Q ss_pred EEEEecCCCchhHHHHHHHHhc-------CCCcEEEEeecCCCccccc-ccccccC---CCceeEEEeeCCChhHHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEK-------NDKGCVIATCRNPNGATGL-LDLKNRF---PERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~-------G~~~~vi~~~r~~~~~~~~-~~~~~~~---~~~v~~~~~Dls~~~~~~~~~ 98 (282)
++.|+|++|.+|.+++..|+.. |....+++.+++++.++.. .++.... ..++. +.. .+.++
T Consensus 102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~-i~~--~~ye~----- 173 (444)
T PLN00112 102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVS-IGI--DPYEV----- 173 (444)
T ss_pred EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceE-Eec--CCHHH-----
Confidence 7899999999999999999988 6544599999999988763 3333221 11211 111 23222
Q ss_pred HHHHHHcCCccEEEECcccCC
Q 023441 99 KSIKEKYGSLNLLINASGILS 119 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~ 119 (282)
+..-|++|..+|...
T Consensus 174 ------~kdaDiVVitAG~pr 188 (444)
T PLN00112 174 ------FQDAEWALLIGAKPR 188 (444)
T ss_pred ------hCcCCEEEECCCCCC
Confidence 247899999999864
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.066 Score=44.75 Aligned_cols=74 Identities=23% Similarity=0.285 Sum_probs=56.1
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
.++|.|+ |-+|..+|+.|.+.|.+ |++++++++..+. ..+. ..++.+.+|-+|++.++++=- ...
T Consensus 2 ~iiIiG~-G~vG~~va~~L~~~g~~--Vv~Id~d~~~~~~~~~~~-----~~~~~v~gd~t~~~~L~~agi------~~a 67 (225)
T COG0569 2 KIIIIGA-GRVGRSVARELSEEGHN--VVLIDRDEERVEEFLADE-----LDTHVVIGDATDEDVLEEAGI------DDA 67 (225)
T ss_pred EEEEECC-cHHHHHHHHHHHhCCCc--eEEEEcCHHHHHHHhhhh-----cceEEEEecCCCHHHHHhcCC------CcC
Confidence 4555554 66799999999999998 9999999988654 2222 257889999999988876621 257
Q ss_pred cEEEECccc
Q 023441 109 NLLINASGI 117 (282)
Q Consensus 109 d~lv~~ag~ 117 (282)
|+++-..|.
T Consensus 68 D~vva~t~~ 76 (225)
T COG0569 68 DAVVAATGN 76 (225)
T ss_pred CEEEEeeCC
Confidence 888888874
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.41 Score=42.29 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=47.9
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCc-----EEEEeecCC--Ccccc-cccccccCC---CceeEEEeeCCChhHHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKG-----CVIATCRNP--NGATG-LLDLKNRFP---ERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~-----~vi~~~r~~--~~~~~-~~~~~~~~~---~~v~~~~~Dls~~~~~~~~~ 98 (282)
++.|+|++|.+|..++..|+..|.-. .+++.+.++ +.++. ..++..... ..++ +. -.+
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~-i~--~~~-------- 73 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVV-AT--TDP-------- 73 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcE-Ee--cCh--------
Confidence 57899999999999999999888533 489999865 33433 333332110 1111 11 011
Q ss_pred HHHHHHcCCccEEEECcccCC
Q 023441 99 KSIKEKYGSLNLLINASGILS 119 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~ 119 (282)
.+.+..-|++|.+||...
T Consensus 74 ---~~~~~daDvVVitAG~~~ 91 (323)
T TIGR01759 74 ---EEAFKDVDAALLVGAFPR 91 (323)
T ss_pred ---HHHhCCCCEEEEeCCCCC
Confidence 222346899999999864
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.14 Score=42.95 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=37.5
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
....+++++|+|.|++ |+|.++++.|++.|.. .+++++.+..+..+
T Consensus 21 ~q~~L~~~~VlIiG~G-GlGs~ia~~La~~Gvg-~i~lvD~D~ve~sN 66 (231)
T PRK08328 21 GQEKLKKAKVAVVGVG-GLGSPVAYYLAAAGVG-RILLIDEQTPELSN 66 (231)
T ss_pred HHHHHhCCcEEEECCC-HHHHHHHHHHHHcCCC-EEEEEcCCccChhh
Confidence 3456788899999874 8999999999999985 78888887766544
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.1 Score=47.73 Aligned_cols=90 Identities=11% Similarity=0.105 Sum_probs=50.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCC-cEEEEeecCCCcccccccccccCC--CceeEEEeeCCChhHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDK-GCVIATCRNPNGATGLLDLKNRFP--ERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~-~~vi~~~r~~~~~~~~~~~~~~~~--~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.|.+++|.||+|++|...+..+...|.- ..|+.++++.++++.+.+...... ..+.....|..+.+++.+.+.+...
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~ 254 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTG 254 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhC
Confidence 4789999999999999987655555430 138888888877665444321100 0111112233332333333333222
Q ss_pred HcCCccEEEECccc
Q 023441 104 KYGSLNLLINASGI 117 (282)
Q Consensus 104 ~~~~id~lv~~ag~ 117 (282)
. ..+|.++.++|.
T Consensus 255 g-~g~D~vid~~g~ 267 (410)
T cd08238 255 G-QGFDDVFVFVPV 267 (410)
T ss_pred C-CCCCEEEEcCCC
Confidence 1 258999998874
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.13 Score=46.38 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=35.1
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
....+++++|+|.|+ ||+|..+++.|++.|.. .+++++.+.-+
T Consensus 35 ~q~~l~~~~VliiG~-GglG~~v~~~La~~Gvg-~i~ivD~D~ve 77 (370)
T PRK05600 35 QQERLHNARVLVIGA-GGLGCPAMQSLASAGVG-TITLIDDDTVD 77 (370)
T ss_pred HHHHhcCCcEEEECC-CHHHHHHHHHHHHcCCC-EEEEEeCCEEc
Confidence 345678889999987 68999999999999974 69998887443
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.11 Score=46.59 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=50.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCC-hhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV-ESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~-~~~~~~~~~~~~~~~ 105 (282)
.|+++||+|+ +++|...+..+...|+. +|+.++++.++++.+.+ .+... ..|..+ .+++.+.+.++..
T Consensus 185 ~g~~VlV~G~-G~iG~~a~q~Ak~~G~~-~Vi~~~~~~~~~~~a~~----~Ga~~---~i~~~~~~~~~~~~v~~~~~-- 253 (368)
T TIGR02818 185 EGDTVAVFGL-GGIGLSVIQGARMAKAS-RIIAIDINPAKFELAKK----LGATD---CVNPNDYDKPIQEVIVEITD-- 253 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHH----hCCCe---EEcccccchhHHHHHHHHhC--
Confidence 4889999985 89999988777778873 38888887776554322 23321 123332 2233333333322
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+.+|+++.++|.
T Consensus 254 ~g~d~vid~~G~ 265 (368)
T TIGR02818 254 GGVDYSFECIGN 265 (368)
T ss_pred CCCCEEEECCCC
Confidence 369999999985
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.084 Score=42.40 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=61.1
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
=+|+||+|+=-||..|+ ++...+-.|+. .|+.++.+++..+...+...+...++.++.+|+++.+
T Consensus 42 g~l~g~~V~DlG~GTG~---La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~----------- 106 (198)
T COG2263 42 GDLEGKTVLDLGAGTGI---LAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR----------- 106 (198)
T ss_pred CCcCCCEEEEcCCCcCH---HHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC-----------
Confidence 46899999999987663 23333446776 7999999999888777666667779999999999876
Q ss_pred HcCCccEEEECcccC
Q 023441 104 KYGSLNLLINASGIL 118 (282)
Q Consensus 104 ~~~~id~lv~~ag~~ 118 (282)
++.|.+|.|.-..
T Consensus 107 --~~~dtvimNPPFG 119 (198)
T COG2263 107 --GKFDTVIMNPPFG 119 (198)
T ss_pred --CccceEEECCCCc
Confidence 6789999998655
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.64 Score=40.71 Aligned_cols=104 Identities=19% Similarity=0.118 Sum_probs=62.4
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccCCC--ceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRFPE--RLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~~~--~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
+.+.|+|+ |.+|.++|..|+.++.--.+++.+.+++..+. ..++...... .-..+..| .+.+++
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~y~~~----------- 67 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GDYEDL----------- 67 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CChhhh-----------
Confidence 36889999 99999999999888753359999999666654 3333221111 11233333 222322
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhh
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSP 158 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 158 (282)
..-|+++..||....|. .+-.+.+..|..=.-.+.+.+..
T Consensus 68 ~~aDiVvitAG~prKpG-------------mtR~DLl~~Na~I~~~i~~~i~~ 107 (313)
T COG0039 68 KGADIVVITAGVPRKPG-------------MTRLDLLEKNAKIVKDIAKAIAK 107 (313)
T ss_pred cCCCEEEEeCCCCCCCC-------------CCHHHHHHhhHHHHHHHHHHHHh
Confidence 36899999999875221 12234566665554444444433
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.2 Score=40.93 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=35.4
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA 67 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~ 67 (282)
....+++++|+|.|+ +|+|.++++.|+..|.. .+.+++.+.-+.
T Consensus 15 ~Q~~L~~s~VlIiG~-gglG~evak~La~~GVg-~i~lvD~d~ve~ 58 (197)
T cd01492 15 AQKRLRSARILLIGL-KGLGAEIAKNLVLSGIG-SLTILDDRTVTE 58 (197)
T ss_pred HHHHHHhCcEEEEcC-CHHHHHHHHHHHHcCCC-EEEEEECCcccH
Confidence 445678889999985 55999999999999986 788888775443
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.13 Score=45.88 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=34.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL 70 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~ 70 (282)
.|++++|.|+ +++|...+..+...|++ |+.+++++++++.+
T Consensus 166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~~--vi~~~~~~~~~~~~ 206 (349)
T TIGR03201 166 KGDLVIVIGA-GGVGGYMVQTAKAMGAA--VVAIDIDPEKLEMM 206 (349)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCe--EEEEcCCHHHHHHH
Confidence 4899999999 99999998888888986 88888887765533
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.13 Score=46.09 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=52.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCCh-hHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE-STIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~-~~~~~~~~~~~~~~ 105 (282)
.|.++||.|+ +++|...+..+...|+. .|+.++++.++.+.+.+ .+... + .|..+. +++.+.+.++..
T Consensus 186 ~g~~VlV~G~-G~vG~~a~~~ak~~G~~-~vi~~~~~~~~~~~~~~----lGa~~-~--i~~~~~~~~~~~~v~~~~~-- 254 (368)
T cd08300 186 PGSTVAVFGL-GAVGLAVIQGAKAAGAS-RIIGIDINPDKFELAKK----FGATD-C--VNPKDHDKPIQQVLVEMTD-- 254 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHH----cCCCE-E--EcccccchHHHHHHHHHhC--
Confidence 4899999975 89999999888888983 38888888876654322 23321 1 243333 234444444333
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+.+|+++.+.|.
T Consensus 255 ~g~d~vid~~g~ 266 (368)
T cd08300 255 GGVDYTFECIGN 266 (368)
T ss_pred CCCcEEEECCCC
Confidence 369999999884
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.21 Score=44.19 Aligned_cols=40 Identities=20% Similarity=0.064 Sum_probs=35.4
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN 65 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~ 65 (282)
-++.||++||.|+ |-+|..++++|.++|.. .|+++.|+..
T Consensus 170 ~~l~~k~vLvIGa-Gem~~l~a~~L~~~g~~-~i~v~nRt~~ 209 (338)
T PRK00676 170 QKSKKASLLFIGY-SEINRKVAYYLQRQGYS-RITFCSRQQL 209 (338)
T ss_pred CCccCCEEEEEcc-cHHHHHHHHHHHHcCCC-EEEEEcCCcc
Confidence 4689999999999 99999999999999975 5999888873
|
|
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.14 Score=45.08 Aligned_cols=84 Identities=17% Similarity=0.089 Sum_probs=49.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCCh--hHHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE--STIEASAKSIKEK 104 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~--~~~~~~~~~~~~~ 104 (282)
.|++++|.|+++++|.++++.....|.+ ++..+++.+..++..+.+.+.+....+ +-.+. ++..+.+.....
T Consensus 146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~~--v~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~i~~~~~- 219 (341)
T cd08290 146 PGDWVIQNGANSAVGQAVIQLAKLLGIK--TINVVRDRPDLEELKERLKALGADHVL---TEEELRSLLATELLKSAPG- 219 (341)
T ss_pred CCCEEEEccchhHHHHHHHHHHHHcCCe--EEEEEcCCCcchhHHHHHHhcCCCEEE---eCcccccccHHHHHHHHcC-
Confidence 5899999999999999999888888987 777777654322222222223332211 11111 022222222221
Q ss_pred cCCccEEEECccc
Q 023441 105 YGSLNLLINASGI 117 (282)
Q Consensus 105 ~~~id~lv~~ag~ 117 (282)
+.+|.++.+.|.
T Consensus 220 -~~~d~vld~~g~ 231 (341)
T cd08290 220 -GRPKLALNCVGG 231 (341)
T ss_pred -CCceEEEECcCc
Confidence 159999998884
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.34 Score=40.94 Aligned_cols=149 Identities=16% Similarity=0.157 Sum_probs=87.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.++||--|.||.|..+++.+-..|+. +|....+.++++.+.+. |.+ ...|-+.++ +.+-+.++-+- .
T Consensus 146 pGhtVlvhaAAGGVGlll~Ql~ra~~a~--tI~~asTaeK~~~aken----G~~---h~I~y~~eD-~v~~V~kiTng-K 214 (336)
T KOG1197|consen 146 PGHTVLVHAAAGGVGLLLCQLLRAVGAH--TIATASTAEKHEIAKEN----GAE---HPIDYSTED-YVDEVKKITNG-K 214 (336)
T ss_pred CCCEEEEEeccccHHHHHHHHHHhcCcE--EEEEeccHHHHHHHHhc----CCc---ceeeccchh-HHHHHHhccCC-C
Confidence 5899999999999999999999999987 88877777766543332 222 123445443 32223333221 2
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
.+|+++-..|... +. +.+. .++.. +.+|.+.-..+..+.
T Consensus 215 GVd~vyDsvG~dt------------------~~--------~sl~-------~Lk~~--------G~mVSfG~asgl~~p 253 (336)
T KOG1197|consen 215 GVDAVYDSVGKDT------------------FA--------KSLA-------ALKPM--------GKMVSFGNASGLIDP 253 (336)
T ss_pred Cceeeeccccchh------------------hH--------HHHH-------HhccC--------ceEEEeccccCCCCC
Confidence 4999998888642 11 1111 22222 266666666555442
Q ss_pred CCC------------CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEec
Q 023441 187 NRL------------GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHP 227 (282)
Q Consensus 187 ~~~------------~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~P 227 (282)
.+. +..-.|-....-+..++-.+=....+.+.+++++.++|
T Consensus 254 ~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~I~~~yp 306 (336)
T KOG1197|consen 254 IPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIHIDHVYP 306 (336)
T ss_pred eehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCccceeeeeecc
Confidence 221 22334666666666655554445555566788887776
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.08 Score=41.79 Aligned_cols=86 Identities=22% Similarity=0.213 Sum_probs=54.6
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccc-ccC------CCceeEEEeeCCChhHHHHHHHH-
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK-NRF------PERLDVLQLDLTVESTIEASAKS- 100 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~-~~~------~~~v~~~~~Dls~~~~~~~~~~~- 100 (282)
+++-+.|- |-+|..+|++|+++|++ |.+.+|+.++.+.+.+.- ... -..+.++-.=+.+.+++++++..
T Consensus 2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~--v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~ 78 (163)
T PF03446_consen 2 MKIGFIGL-GNMGSAMARNLAKAGYE--VTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGE 78 (163)
T ss_dssp BEEEEE---SHHHHHHHHHHHHTTTE--EEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCT
T ss_pred CEEEEEch-HHHHHHHHHHHHhcCCe--EEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhh
Confidence 35667776 79999999999999988 889999987665433221 000 01445666667888888888877
Q ss_pred -HHHHcCCccEEEECccc
Q 023441 101 -IKEKYGSLNLLINASGI 117 (282)
Q Consensus 101 -~~~~~~~id~lv~~ag~ 117 (282)
+...+.+=+++|.+.-.
T Consensus 79 ~i~~~l~~g~iiid~sT~ 96 (163)
T PF03446_consen 79 NILAGLRPGKIIIDMSTI 96 (163)
T ss_dssp THGGGS-TTEEEEE-SS-
T ss_pred HHhhccccceEEEecCCc
Confidence 66655444555555443
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.16 Score=46.96 Aligned_cols=36 Identities=36% Similarity=0.471 Sum_probs=32.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA 67 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~ 67 (282)
++.|.||+|++|.++++.|.+.|.+ |++.+|+.+..
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~--V~v~~r~~~~~ 37 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFE--VIVTGRDPKKG 37 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCE--EEEEECChHHH
Confidence 6899999999999999999999976 88889987654
|
|
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.098 Score=45.26 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=34.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT 68 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~ 68 (282)
+|++++|+|+++++|.+++..+...|.. |+.++++.++.+
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~--v~~~~~~~~~~~ 178 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGAR--VIAAASSEEKLA 178 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCCE--EEEEeCCHHHHH
Confidence 5789999999999999999999999987 888888766544
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.11 Score=45.36 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=51.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+++|+|+++++|.++++.+...|.+ |+.++++.++.+.+.+ .+.. .+ .|..+.+..+++.+. .. ..
T Consensus 142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~--v~~~~~~~~~~~~~~~----~g~~-~~--~~~~~~~~~~~~~~~-~~-~~ 210 (324)
T cd08244 142 PGDVVLVTAAAGGLGSLLVQLAKAAGAT--VVGAAGGPAKTALVRA----LGAD-VA--VDYTRPDWPDQVREA-LG-GG 210 (324)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHH----cCCC-EE--EecCCccHHHHHHHH-cC-CC
Confidence 4789999999999999999888889987 8888887766543322 2221 11 233343333332221 11 12
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|.++++.|.
T Consensus 211 ~~d~vl~~~g~ 221 (324)
T cd08244 211 GVTVVLDGVGG 221 (324)
T ss_pred CceEEEECCCh
Confidence 59999999874
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.21 Score=40.88 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=38.0
Q ss_pred ccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc
Q 023441 20 ASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT 68 (282)
Q Consensus 20 ~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~ 68 (282)
......++.++++|.|+ ||+|..+|+.|++.|.. .+++.+++.-+..
T Consensus 13 ~~~q~~L~~~~V~IvG~-GglGs~ia~~La~~Gvg-~i~lvD~D~ve~s 59 (200)
T TIGR02354 13 PKIVQKLEQATVAICGL-GGLGSNVAINLARAGIG-KLILVDFDVVEPS 59 (200)
T ss_pred HHHHHHHhCCcEEEECc-CHHHHHHHHHHHHcCCC-EEEEECCCEEccc
Confidence 33456678899999998 78999999999999984 5999999854433
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.096 Score=45.73 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=50.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+++|.|+++++|.++++.....|++ ++.+.++.++.+.+.+. +.. .++ +..+. +..+.+...... .
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~--v~~~~~~~~~~~~~~~~----g~~-~~~--~~~~~-~~~~~i~~~~~~-~ 207 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGIN--VINLVRRDAGVAELRAL----GIG-PVV--STEQP-GWQDKVREAAGG-A 207 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCe--EEEEecCHHHHHHHHhc----CCC-EEE--cCCCc-hHHHHHHHHhCC-C
Confidence 5889999999999999999888889987 88887777665443321 221 122 22222 222222222211 2
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|+++.+.|.
T Consensus 208 ~~d~v~d~~g~ 218 (324)
T cd08292 208 PISVALDSVGG 218 (324)
T ss_pred CCcEEEECCCC
Confidence 59999998884
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.25 Score=43.65 Aligned_cols=41 Identities=29% Similarity=0.190 Sum_probs=33.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
+.+.+.|+|| |.+|..++..++..|. ..|++.+.+++.++.
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g 44 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQG 44 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchh
Confidence 4568999997 8899999999999984 249999998876543
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.23 Score=44.08 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=30.7
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCC-cEEEEeecCCCcc
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDK-GCVIATCRNPNGA 67 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~-~~vi~~~r~~~~~ 67 (282)
+.+++|.||||.+|.++++.|+++|.. ..+..+.++....
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g 41 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAG 41 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCC
Confidence 357999999999999999999998754 2356666665443
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.12 Score=45.28 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=35.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL 70 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~ 70 (282)
.|++++|.|+++++|.++++.....|.+ |+.+++++++.+.+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~--v~~~~~~~~~~~~~ 187 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYE--VVASTGKADAADYL 187 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCe--EEEEecCHHHHHHH
Confidence 3679999999999999999888889987 88888887765443
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.13 Score=47.98 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=50.2
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC-cccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN-GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~-~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
+..++++|+++|.|+ |++|.++|+.|+++|.+ |++.+++.. ......+.+.+. .+.+...+-..
T Consensus 10 ~~~~~~~~~v~viG~-G~~G~~~A~~L~~~G~~--V~~~d~~~~~~~~~~~~~l~~~--gv~~~~~~~~~---------- 74 (480)
T PRK01438 10 WHSDWQGLRVVVAGL-GVSGFAAADALLELGAR--VTVVDDGDDERHRALAAILEAL--GATVRLGPGPT---------- 74 (480)
T ss_pred cccCcCCCEEEEECC-CHHHHHHHHHHHHCCCE--EEEEeCCchhhhHHHHHHHHHc--CCEEEECCCcc----------
Confidence 335678999999997 77999999999999988 888875543 222222323322 23333222111
Q ss_pred HHHHcCCccEEEECcccCC
Q 023441 101 IKEKYGSLNLLINASGILS 119 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~ 119 (282)
.....|.+|.+.|+.+
T Consensus 75 ---~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 75 ---LPEDTDLVVTSPGWRP 90 (480)
T ss_pred ---ccCCCCEEEECCCcCC
Confidence 0124788888888764
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.32 Score=39.76 Aligned_cols=80 Identities=20% Similarity=0.141 Sum_probs=51.1
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEE---eeCCChhHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQ---LDLTVESTIEASAK 99 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~---~Dls~~~~~~~~~~ 99 (282)
...+++.+|+|.|+++ +|.++++.|+..|.. .+.+++.+.-...++.. -.++. -|+. ....+.+.+
T Consensus 14 q~~L~~s~VlviG~gg-lGsevak~L~~~GVg-~i~lvD~d~ve~snl~r--------q~~~~~~~~~iG-~~Ka~~~~~ 82 (198)
T cd01485 14 QNKLRSAKVLIIGAGA-LGAEIAKNLVLAGID-SITIVDHRLVSTEDLGS--------NFFLDAEVSNSG-MNRAAASYE 82 (198)
T ss_pred HHHHhhCcEEEECCCH-HHHHHHHHHHHcCCC-EEEEEECCcCChhcCcc--------cEecccchhhcC-chHHHHHHH
Confidence 3456778999998776 999999999999986 79998887655443211 11222 2333 234555566
Q ss_pred HHHHHcCCccEEEE
Q 023441 100 SIKEKYGSLNLLIN 113 (282)
Q Consensus 100 ~~~~~~~~id~lv~ 113 (282)
++++.-+.+++-..
T Consensus 83 ~L~~lNp~v~i~~~ 96 (198)
T cd01485 83 FLQELNPNVKLSIV 96 (198)
T ss_pred HHHHHCCCCEEEEE
Confidence 66665555554443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.077 Score=44.91 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=41.8
Q ss_pred hccccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc
Q 023441 17 TSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT 68 (282)
Q Consensus 17 ~~~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~ 68 (282)
.+....-.+++.-++.|.|++|-||.++|+.|+.++.. .+++.|+.+...
T Consensus 156 ~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~--~~ll~r~aea~~ 205 (351)
T COG5322 156 KHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGV--KELLLRDAEARN 205 (351)
T ss_pred HHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCE--EEEecccHHhhh
Confidence 44455568889999999999999999999999999977 888888776554
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.2 Score=45.31 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=49.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCCh-hHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE-STIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~-~~~~~~~~~~~~~~ 105 (282)
.|+++||+|+ |++|...++.....|+. .|+.+++++++.+.+. +.+... + .|..+. ++..+.+.+...
T Consensus 193 ~g~~VlV~G~-G~vG~~~iqlak~~G~~-~vi~~~~~~~~~~~a~----~lGa~~-~--i~~~~~~~~~~~~v~~~~~-- 261 (378)
T PLN02827 193 KGSSVVIFGL-GTVGLSVAQGAKLRGAS-QIIGVDINPEKAEKAK----TFGVTD-F--INPNDLSEPIQQVIKRMTG-- 261 (378)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEECCCHHHHHHHH----HcCCcE-E--EcccccchHHHHHHHHHhC--
Confidence 4899999985 99999998877778975 3666666665544332 223321 1 233322 233333333322
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+.+|+++.++|.
T Consensus 262 ~g~d~vid~~G~ 273 (378)
T PLN02827 262 GGADYSFECVGD 273 (378)
T ss_pred CCCCEEEECCCC
Confidence 369999999985
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.34 Score=42.07 Aligned_cols=54 Identities=24% Similarity=0.207 Sum_probs=38.3
Q ss_pred HHhhhhhhhhccccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc
Q 023441 8 FRSIRKVAFTSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA 67 (282)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~ 67 (282)
|+|.+|+..-.+-.. +++||+||=.||..|- .+-+++++|+. .|+.++.+....
T Consensus 98 WrSd~KW~rl~p~l~--~L~gk~VLDIGC~nGY---~~frM~~~GA~-~ViGiDP~~lf~ 151 (315)
T PF08003_consen 98 WRSDWKWDRLLPHLP--DLKGKRVLDIGCNNGY---YSFRMLGRGAK-SVIGIDPSPLFY 151 (315)
T ss_pred ccccchHHHHHhhhC--CcCCCEEEEecCCCcH---HHHHHhhcCCC-EEEEECCChHHH
Confidence 455566665554443 8999999999998873 34577788987 678777766543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.15 Score=45.45 Aligned_cols=77 Identities=22% Similarity=0.265 Sum_probs=47.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|+|+ |++|...+..+...|++ |++++|+....++ .+...+.+.. + .|..+. ++.+ . ...+
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~~--vi~~~~~~~~~~~-~~~~~~~Ga~--~--v~~~~~-~~~~-~----~~~~ 237 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLRGFE--VYVLNRRDPPDPK-ADIVEELGAT--Y--VNSSKT-PVAE-V----KLVG 237 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCe--EEEEecCCCCHHH-HHHHHHcCCE--E--ecCCcc-chhh-h----hhcC
Confidence 6899999986 99999999777778886 8888885321111 1122233333 2 233332 2222 1 1124
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|++|.++|.
T Consensus 238 ~~d~vid~~g~ 248 (355)
T cd08230 238 EFDLIIEATGV 248 (355)
T ss_pred CCCEEEECcCC
Confidence 69999999985
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.39 Score=40.53 Aligned_cols=83 Identities=10% Similarity=0.078 Sum_probs=55.4
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
...+++++|+|.|+ ||+|..+++.|++.|.. ++++++.+.-+..++.. .+.+-..|+.. ...+.+.+.+.
T Consensus 19 q~~L~~~~VlvvG~-GglGs~va~~La~~Gvg-~i~lvD~D~ve~sNL~R-------Q~l~~~~diG~-~Ka~~a~~~l~ 88 (240)
T TIGR02355 19 QEALKASRVLIVGL-GGLGCAASQYLAAAGVG-NLTLLDFDTVSLSNLQR-------QVLHSDANIGQ-PKVESAKDALT 88 (240)
T ss_pred HHHHhCCcEEEECc-CHHHHHHHHHHHHcCCC-EEEEEeCCcccccCccc-------ceeeeHhhCCC-cHHHHHHHHHH
Confidence 34677889998876 58999999999999986 79999998877654322 12222345653 34555566666
Q ss_pred HHcCCccEEEECc
Q 023441 103 EKYGSLNLLINAS 115 (282)
Q Consensus 103 ~~~~~id~lv~~a 115 (282)
+..+.+++-.++.
T Consensus 89 ~inp~v~i~~~~~ 101 (240)
T TIGR02355 89 QINPHIAINPINA 101 (240)
T ss_pred HHCCCcEEEEEec
Confidence 6655555554443
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.14 Score=45.30 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=49.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|+|+ +++|...++.+...|++ .|+.+++++++.+.+. +.+... ..|..+.+ .+++.+ ... ..
T Consensus 163 ~g~~vlV~G~-G~vG~~~~~~ak~~G~~-~vi~~~~~~~~~~~~~----~~ga~~---~i~~~~~~-~~~~~~-~~~-~~ 230 (339)
T cd08239 163 GRDTVLVVGA-GPVGLGALMLARALGAE-DVIGVDPSPERLELAK----ALGADF---VINSGQDD-VQEIRE-LTS-GA 230 (339)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHH----HhCCCE---EEcCCcch-HHHHHH-HhC-CC
Confidence 4899999986 89999999888888876 4777777766544332 223221 13444333 332222 111 12
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
++|+++.+.|..
T Consensus 231 ~~d~vid~~g~~ 242 (339)
T cd08239 231 GADVAIECSGNT 242 (339)
T ss_pred CCCEEEECCCCH
Confidence 699999998853
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.099 Score=41.17 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=30.1
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP 64 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~ 64 (282)
.+++||+++|.|.+.-+|+-++..|.++|+. |.++....
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~at--Vt~~h~~T 70 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGAT--VTICHSKT 70 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHHHHTT-E--EEEE-TTS
T ss_pred CCCCCCEEEEECCcCCCChHHHHHHHhCCCe--EEeccCCC
Confidence 5689999999999999999999999999987 76655443
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.12 Score=45.30 Aligned_cols=79 Identities=18% Similarity=0.171 Sum_probs=50.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|.|+++++|.+++....+.|.+ |+.+.++.++.+.+.+ .+.. .+ .|..+ .+..+.+..... .
T Consensus 139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~--v~~~~~~~~~~~~~~~----~g~~-~v--~~~~~-~~~~~~~~~~~~--~ 206 (329)
T cd08250 139 SGETVLVTAAAGGTGQFAVQLAKLAGCH--VIGTCSSDEKAEFLKS----LGCD-RP--INYKT-EDLGEVLKKEYP--K 206 (329)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHcCCe--EEEEeCcHHHHHHHHH----cCCc-eE--EeCCC-ccHHHHHHHhcC--C
Confidence 5789999999999999998888888987 8888887765443322 2221 11 22222 223232322221 3
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|.++++.|.
T Consensus 207 ~vd~v~~~~g~ 217 (329)
T cd08250 207 GVDVVYESVGG 217 (329)
T ss_pred CCeEEEECCcH
Confidence 59999998774
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.036 Score=46.20 Aligned_cols=80 Identities=11% Similarity=0.020 Sum_probs=54.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.++.|+++|=.||.+| -+++.||+.|++ |...+-.++..+-......+.+-.+.|.+.. ++++.+
T Consensus 56 ~~l~g~~vLDvGCGgG---~Lse~mAr~Ga~--VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~----------~edl~~ 120 (243)
T COG2227 56 FDLPGLRVLDVGCGGG---ILSEPLARLGAS--VTGIDASEKPIEVAKLHALESGVNIDYRQAT----------VEDLAS 120 (243)
T ss_pred cCCCCCeEEEecCCcc---HhhHHHHHCCCe--eEEecCChHHHHHHHHhhhhccccccchhhh----------HHHHHh
Confidence 3388999999999999 689999999988 9999998887765444333333333333222 223333
Q ss_pred HcCCccEEEECcccC
Q 023441 104 KYGSLNLLINASGIL 118 (282)
Q Consensus 104 ~~~~id~lv~~ag~~ 118 (282)
..++.|++++.-=+-
T Consensus 121 ~~~~FDvV~cmEVlE 135 (243)
T COG2227 121 AGGQFDVVTCMEVLE 135 (243)
T ss_pred cCCCccEEEEhhHHH
Confidence 336899998876543
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.14 Score=46.12 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=48.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|+|+ +++|...+..+...|+. .|+.+++++++++.+.+ .+... ..|..+.+ ..+.+.+... +
T Consensus 191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~-~Vi~~~~~~~r~~~a~~----~Ga~~---~i~~~~~~-~~~~i~~~~~--~ 258 (371)
T cd08281 191 PGQSVAVVGL-GGVGLSALLGAVAAGAS-QVVAVDLNEDKLALARE----LGATA---TVNAGDPN-AVEQVRELTG--G 258 (371)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHHHH----cCCce---EeCCCchh-HHHHHHHHhC--C
Confidence 4789999985 89999988777778983 37888877766543322 23321 12333322 2222222222 3
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|++|.++|.
T Consensus 259 g~d~vid~~G~ 269 (371)
T cd08281 259 GVDYAFEMAGS 269 (371)
T ss_pred CCCEEEECCCC
Confidence 69999999885
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.2 Score=43.46 Aligned_cols=77 Identities=23% Similarity=0.316 Sum_probs=49.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|.|+++++|.++++.....|++ |+.+++++++.+.+. +.+... ++. + .. +..+.+... -.
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~--v~~~~~~~~~~~~~~----~~g~~~-~~~-~--~~-~~~~~i~~~---~~ 207 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGAT--VTATTRSPERAALLK----ELGADE-VVI-D--DG-AIAEQLRAA---PG 207 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHH----hcCCcE-EEe-c--Cc-cHHHHHHHh---CC
Confidence 5789999999999999999888889987 888888776543332 223221 111 1 11 222222222 13
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|.++.+.|.
T Consensus 208 ~~d~vl~~~~~ 218 (320)
T cd08243 208 GFDKVLELVGT 218 (320)
T ss_pred CceEEEECCCh
Confidence 69999998874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.2 Score=43.17 Aligned_cols=78 Identities=22% Similarity=0.240 Sum_probs=46.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|.|+ +++|...++.+...|++ +|+.+++++++.+.+.+ .+.... .|..+ ..+.+.+... -.
T Consensus 120 ~g~~VlV~G~-G~vG~~~~~~ak~~G~~-~Vi~~~~~~~r~~~a~~----~Ga~~~---i~~~~---~~~~~~~~~~-~~ 186 (280)
T TIGR03366 120 KGRRVLVVGA-GMLGLTAAAAAAAAGAA-RVVAADPSPDRRELALS----FGATAL---AEPEV---LAERQGGLQN-GR 186 (280)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHH----cCCcEe---cCchh---hHHHHHHHhC-CC
Confidence 6899999986 89999998877778875 36666666655433222 233211 12222 1122222211 12
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.++|.
T Consensus 187 g~d~vid~~G~ 197 (280)
T TIGR03366 187 GVDVALEFSGA 197 (280)
T ss_pred CCCEEEECCCC
Confidence 58999999885
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.22 Score=44.71 Aligned_cols=80 Identities=15% Similarity=0.254 Sum_probs=50.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCCh-hHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE-STIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~-~~~~~~~~~~~~~~ 105 (282)
.|.+++|.|+ +++|...++.+...|+. +|+.++++.++.+.+. +.+.. .+ .|..+. +++.+.+.++..
T Consensus 187 ~g~~VlV~G~-g~vG~~a~q~ak~~G~~-~vi~~~~~~~~~~~~~----~~Ga~-~~--i~~~~~~~~~~~~v~~~~~-- 255 (369)
T cd08301 187 KGSTVAIFGL-GAVGLAVAEGARIRGAS-RIIGVDLNPSKFEQAK----KFGVT-EF--VNPKDHDKPVQEVIAEMTG-- 255 (369)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHH----HcCCc-eE--EcccccchhHHHHHHHHhC--
Confidence 5899999985 89999988877778872 3888888876654332 22332 11 133321 234444443332
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+.+|+++.+.|.
T Consensus 256 ~~~d~vid~~G~ 267 (369)
T cd08301 256 GGVDYSFECTGN 267 (369)
T ss_pred CCCCEEEECCCC
Confidence 269999999875
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.17 Score=45.14 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=48.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||.|+ +++|...+......|++ +|+.++++.++.+.+.+ .+.. .+ .|..+.+..++ +.+.... .
T Consensus 176 ~g~~VlV~G~-g~vG~~a~~~ak~~G~~-~Vi~~~~~~~~~~~~~~----~Ga~-~~--i~~~~~~~~~~-i~~~~~~-~ 244 (358)
T TIGR03451 176 RGDSVAVIGC-GGVGDAAIAGAALAGAS-KIIAVDIDDRKLEWARE----FGAT-HT--VNSSGTDPVEA-IRALTGG-F 244 (358)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHH----cCCc-eE--EcCCCcCHHHH-HHHHhCC-C
Confidence 4899999985 99999998777778874 47777787766544322 2332 11 23333322222 2221111 2
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.++|.
T Consensus 245 g~d~vid~~g~ 255 (358)
T TIGR03451 245 GADVVIDAVGR 255 (358)
T ss_pred CCCEEEECCCC
Confidence 58999999885
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.62 Score=42.17 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=48.5
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCc-----EEEEe--ecCCCcccc-cccccccC-C--CceeEEEeeCCChhHHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKG-----CVIAT--CRNPNGATG-LLDLKNRF-P--ERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~-----~vi~~--~r~~~~~~~-~~~~~~~~-~--~~v~~~~~Dls~~~~~~~~~ 98 (282)
++.|+|++|.+|..+|..|+..|.-. .++|. +++.+.++. ..++.... . .++.+ .. .+.+
T Consensus 46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i-~~--~~y~------ 116 (387)
T TIGR01757 46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSI-GI--DPYE------ 116 (387)
T ss_pred EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEE-ec--CCHH------
Confidence 78999999999999999999887532 34444 778877765 33333211 0 12111 11 2222
Q ss_pred HHHHHHcCCccEEEECcccCC
Q 023441 99 KSIKEKYGSLNLLINASGILS 119 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~ 119 (282)
.+...|++|..+|...
T Consensus 117 -----~~kdaDIVVitAG~pr 132 (387)
T TIGR01757 117 -----VFEDADWALLIGAKPR 132 (387)
T ss_pred -----HhCCCCEEEECCCCCC
Confidence 2247899999999864
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.21 Score=40.00 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=37.9
Q ss_pred cccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc
Q 023441 19 SASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA 67 (282)
Q Consensus 19 ~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~ 67 (282)
......++.||++.|.|. |.||+++|+.|..-|.+ |+..+|.....
T Consensus 27 ~~~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~--V~~~d~~~~~~ 72 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGY-GRIGRAVARRLKAFGMR--VIGYDRSPKPE 72 (178)
T ss_dssp TTTTBS-STTSEEEEEST-SHHHHHHHHHHHHTT-E--EEEEESSCHHH
T ss_pred cCCCccccCCCEEEEEEE-cCCcCeEeeeeecCCce--eEEecccCChh
Confidence 345567899999999976 89999999999999987 99999988654
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.17 Score=44.17 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=50.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+++|.|+++++|.++++.+...|++ ++..+++.++.+.+.+ .+... ..|..+.+..++ +.+... ..
T Consensus 138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~--v~~~~~~~~~~~~~~~----~g~~~---~~~~~~~~~~~~-~~~~~~-~~ 206 (323)
T cd05282 138 PGDWVIQNAANSAVGRMLIQLAKLLGFK--TINVVRRDEQVEELKA----LGADE---VIDSSPEDLAQR-VKEATG-GA 206 (323)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCe--EEEEecChHHHHHHHh----cCCCE---EecccchhHHHH-HHHHhc-CC
Confidence 5789999999999999999988899987 8888887765443321 22211 112222222222 222211 12
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|.++.+.|.
T Consensus 207 ~~d~vl~~~g~ 217 (323)
T cd05282 207 GARLALDAVGG 217 (323)
T ss_pred CceEEEECCCC
Confidence 59999998874
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.39 Score=42.18 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=31.7
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
+|+|.|+ ||+|.++++.|+..|.. .+.+++.+.-+..+
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg-~ItIvD~D~Ve~sN 38 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFG-EIHIIDLDTIDLSN 38 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCC-eEEEEcCCCcchhh
Confidence 4788886 89999999999999985 79999887766544
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.3 Score=43.36 Aligned_cols=40 Identities=23% Similarity=0.113 Sum_probs=34.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
..+.|+++.|.|. |.||+++|+.|...|.+ |+..+|+...
T Consensus 142 ~~l~g~~VgIIG~-G~IG~~vA~~L~~~G~~--V~~~d~~~~~ 181 (330)
T PRK12480 142 KPVKNMTVAIIGT-GRIGAATAKIYAGFGAT--ITAYDAYPNK 181 (330)
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHhCCCE--EEEEeCChhH
Confidence 5789999999976 67999999999999987 8888887643
|
|
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.13 Score=44.29 Aligned_cols=41 Identities=27% Similarity=0.316 Sum_probs=34.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
+|++++|.|+++++|.++++.....|+. |+..+++.++.+.
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~--v~~~~~~~~~~~~ 176 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGAT--VIGTVSSEEKAEL 176 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCE--EEEEcCCHHHHHH
Confidence 5899999999999999999888888987 8888777665443
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.31 Score=47.68 Aligned_cols=48 Identities=15% Similarity=-0.011 Sum_probs=37.9
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccc
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD 72 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~ 72 (282)
...+++++|+|.|+ | +|..++..|++.|.-..+++++.+.-+..++..
T Consensus 102 Q~~L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnR 149 (722)
T PRK07877 102 QERLGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNR 149 (722)
T ss_pred HHHHhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEccccccc
Confidence 45678899999999 4 999999999999952259999988766555433
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.38 Score=43.10 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=46.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|.|+ +++|...+......|++ |+.++.+.++.....+ +.+.... .|..+.+.+++ ..+
T Consensus 183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~--vi~~~~~~~~~~~~~~---~~Ga~~v---i~~~~~~~~~~-------~~~ 246 (360)
T PLN02586 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLK--VTVISSSSNKEDEAIN---RLGADSF---LVSTDPEKMKA-------AIG 246 (360)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCE--EEEEeCCcchhhhHHH---hCCCcEE---EcCCCHHHHHh-------hcC
Confidence 5889999775 89999998877788987 7777666554332222 2233211 12233222222 224
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.+.|.
T Consensus 247 ~~D~vid~~g~ 257 (360)
T PLN02586 247 TMDYIIDTVSA 257 (360)
T ss_pred CCCEEEECCCC
Confidence 58999999884
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.45 Score=41.14 Aligned_cols=87 Identities=11% Similarity=0.031 Sum_probs=61.4
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
....+++.+|+|.|+ ||+|..+++.|++.|.. .+.+++.+.-+..++... +.+-.-|+.. ..++.+.+.+
T Consensus 21 ~Q~kL~~s~VlIvG~-GGLGs~va~~LA~aGVG-~i~lvD~D~Ve~SNLnRQ-------~l~~~~diG~-~Kve~a~~~l 90 (287)
T PRK08223 21 EQQRLRNSRVAIAGL-GGVGGIHLLTLARLGIG-KFTIADFDVFELRNFNRQ-------AGAMMSTLGR-PKAEVLAEMV 90 (287)
T ss_pred HHHHHhcCCEEEECC-CHHHHHHHHHHHHhCCC-eEEEEeCCCcchhccccc-------cCcChhHCCC-cHHHHHHHHH
Confidence 456688899999986 58999999999999985 799999988776553322 1222235543 4566666777
Q ss_pred HHHcCCccEEEECcccC
Q 023441 102 KEKYGSLNLLINASGIL 118 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~ 118 (282)
.+.-+.+++-.++..+.
T Consensus 91 ~~iNP~v~V~~~~~~l~ 107 (287)
T PRK08223 91 RDINPELEIRAFPEGIG 107 (287)
T ss_pred HHHCCCCEEEEEecccC
Confidence 66667788777776654
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.091 Score=48.52 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=50.2
Q ss_pred cCcEEEEecCCC-chhHHHHHHHHhcCCCcEEEEeecCCCcccccccc--cccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASR-GIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL--KNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 27 ~gk~vlItGas~-giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~--~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++|++.||++ .|....++..++.|....|+++-.|+.....+++. .+..+++|++++.|+.+.+.-+
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-------- 257 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-------- 257 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--------
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC--------
Confidence 679999999755 45555666666666556799988887554333332 3445679999999999876432
Q ss_pred HcCCccEEEECc
Q 023441 104 KYGSLNLLINAS 115 (282)
Q Consensus 104 ~~~~id~lv~~a 115 (282)
++|+||.=-
T Consensus 258 ---kvDIIVSEl 266 (448)
T PF05185_consen 258 ---KVDIIVSEL 266 (448)
T ss_dssp ----EEEEEE--
T ss_pred ---ceeEEEEec
Confidence 799998643
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.67 Score=40.76 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=50.5
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccC--CCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRF--PERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~--~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.++.|+|+ |.+|..+|..|+..|....+++.+.+++.++. ..++.... .....+.. -+|.++ +
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~--~~dy~~-----------~ 69 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEA--DKDYSV-----------T 69 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEE--CCCHHH-----------h
Confidence 47889996 99999999999998865569999998876654 33333221 11112221 122222 2
Q ss_pred CCccEEEECcccCC
Q 023441 106 GSLNLLINASGILS 119 (282)
Q Consensus 106 ~~id~lv~~ag~~~ 119 (282)
...|++|.++|...
T Consensus 70 ~~adivvitaG~~~ 83 (312)
T cd05293 70 ANSKVVIVTAGARQ 83 (312)
T ss_pred CCCCEEEECCCCCC
Confidence 36899999999864
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.4 Score=42.36 Aligned_cols=76 Identities=24% Similarity=0.350 Sum_probs=47.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+++|+|+++++|.++++.....|++ |+...++ ++.+ ...+.+.. . ..|..+.+..+++ .. .+
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~--v~~~~~~-~~~~----~~~~~g~~-~--~~~~~~~~~~~~l----~~-~~ 226 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGAH--VTTTCST-DAIP----LVKSLGAD-D--VIDYNNEDFEEEL----TE-RG 226 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCe--EEEEeCc-chHH----HHHHhCCc-e--EEECCChhHHHHH----Hh-cC
Confidence 4899999999999999999888888987 7766654 2221 22222221 1 2233333322222 22 24
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|.++.+.|.
T Consensus 227 ~vd~vi~~~g~ 237 (350)
T cd08248 227 KFDVILDTVGG 237 (350)
T ss_pred CCCEEEECCCh
Confidence 69999998874
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.48 Score=42.95 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=52.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+.-+.|+++|+|++ .+|+.+++.+.+.|.+ |+.++.++...... . .+ .++.+|..|.+.+.+++++
T Consensus 8 ~~~~~~~ilIiG~g-~~~~~~~~a~~~~G~~--v~~~~~~~~~~~~~--~----ad--~~~~~~~~d~~~l~~~~~~--- 73 (395)
T PRK09288 8 LSPSATRVMLLGSG-ELGKEVAIEAQRLGVE--VIAVDRYANAPAMQ--V----AH--RSHVIDMLDGDALRAVIER--- 73 (395)
T ss_pred CCCCCCEEEEECCC-HHHHHHHHHHHHCCCE--EEEEeCCCCCchHH--h----hh--heEECCCCCHHHHHHHHHH---
Confidence 33456799999875 6899999999999987 88877766432111 1 11 2466788888777766653
Q ss_pred HcCCccEEEECc
Q 023441 104 KYGSLNLLINAS 115 (282)
Q Consensus 104 ~~~~id~lv~~a 115 (282)
.++|+++...
T Consensus 74 --~~id~vi~~~ 83 (395)
T PRK09288 74 --EKPDYIVPEI 83 (395)
T ss_pred --hCCCEEEEee
Confidence 2689888644
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.26 Score=44.94 Aligned_cols=44 Identities=30% Similarity=0.348 Sum_probs=36.8
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
...+.|++++|.|+. .||+.+++.+...|++ |++.++++.++..
T Consensus 197 ~~~l~GktVvViG~G-~IG~~va~~ak~~Ga~--ViV~d~d~~R~~~ 240 (413)
T cd00401 197 DVMIAGKVAVVAGYG-DVGKGCAQSLRGQGAR--VIVTEVDPICALQ 240 (413)
T ss_pred CCCCCCCEEEEECCC-HHHHHHHHHHHHCCCE--EEEEECChhhHHH
Confidence 345789999999987 7999999999999997 8888888776543
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.094 Score=43.57 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=33.6
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL 70 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~ 70 (282)
++.|+||+|.+|.++++.|++.|.+ |++.+|++++.+..
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~--V~v~~r~~~~~~~l 40 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNK--IIIGSRDLEKAEEA 40 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCE--EEEEEcCHHHHHHH
Confidence 5889999999999999999999977 88889988776543
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.44 Score=42.46 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=27.5
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCC-cEEEEeecCCCc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDK-GCVIATCRNPNG 66 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~-~~vi~~~r~~~~ 66 (282)
++.|.||||.+|.++++.|.++|.. ..+...+++...
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~ 38 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSA 38 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccC
Confidence 4789999999999999999997755 224444555443
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.34 Score=42.36 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=49.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+++|.|+++++|.++++.+...|.. ++.+.++.++.+.+. +++... + .|..+.+...+.+...... .
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~--v~~~~~~~~~~~~~~----~~g~~~-~--~~~~~~~~~~~~~~~~~~~-~ 209 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGAA--TIITTSSEEKVDFCK----KLAAII-L--IRYPDEEGFAPKVKKLTGE-K 209 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHH----HcCCcE-E--EecCChhHHHHHHHHHhCC-C
Confidence 5789999999999999999999899987 666777765544332 223321 1 2222222122222222111 2
Q ss_pred CccEEEECcc
Q 023441 107 SLNLLINASG 116 (282)
Q Consensus 107 ~id~lv~~ag 116 (282)
.+|.++.+.|
T Consensus 210 ~~d~~i~~~~ 219 (334)
T PTZ00354 210 GVNLVLDCVG 219 (334)
T ss_pred CceEEEECCc
Confidence 5999999876
|
|
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.21 Score=43.94 Aligned_cols=41 Identities=32% Similarity=0.370 Sum_probs=34.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
.|.+++|.|+++.+|.++++.+...|.+ ++.++++.++.+.
T Consensus 162 ~~~~vlI~g~~g~~g~~~~~la~~~g~~--vi~~~~~~~~~~~ 202 (334)
T PRK13771 162 KGETVLVTGAGGGVGIHAIQVAKALGAK--VIAVTSSESKAKI 202 (334)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCE--EEEEeCCHHHHHH
Confidence 4789999999999999999888889987 8888887766543
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.26 Score=43.96 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=31.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCC-CcEEEEeecCCCccc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKND-KGCVIATCRNPNGAT 68 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~-~~~vi~~~r~~~~~~ 68 (282)
.|+++||+| ++++|.++++.+...|+ + |+.+++++++.+
T Consensus 177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~--v~~~~~~~~~~~ 216 (361)
T cd08231 177 AGDTVVVQG-AGPLGLYAVAAAKLAGARR--VIVIDGSPERLE 216 (361)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCe--EEEEcCCHHHHH
Confidence 688999997 59999999988888898 5 888877666543
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.11 Score=44.81 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=36.1
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccc
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD 72 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~ 72 (282)
+|+++|.|+ ||-+++++..|++.|.. .|.++.|+.++.+.+.+
T Consensus 122 ~~~vlilGa-GGaarAi~~aL~~~g~~-~i~i~nR~~~~a~~la~ 164 (272)
T PRK12550 122 DLVVALRGS-GGMAKAVAAALRDAGFT-DGTIVARNEKTGKALAE 164 (272)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCCC-EEEEEeCCHHHHHHHHH
Confidence 578999996 89999999999999985 69999999877665444
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.38 Score=42.95 Aligned_cols=39 Identities=31% Similarity=0.329 Sum_probs=34.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN 65 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~ 65 (282)
.++.||++.|.|. |.||+++|+.|...|.+ |+..+|+..
T Consensus 155 ~~l~gktvGIiG~-G~IG~~vA~~l~afG~~--V~~~dr~~~ 193 (347)
T PLN02928 155 DTLFGKTVFILGY-GAIGIELAKRLRPFGVK--LLATRRSWT 193 (347)
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHhhCCCE--EEEECCCCC
Confidence 5789999999998 89999999999999987 888888643
|
|
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.22 Score=43.69 Aligned_cols=80 Identities=19% Similarity=0.207 Sum_probs=46.9
Q ss_pred cCcEEEE-ecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLV-QGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlI-tGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.+..++| +||++++|.+.+......|++ |+..+++.++.+.+.+ .+... ++ |..+.+ ..+.+.+....
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~--vi~~~~~~~~~~~~~~----~g~~~-~i--~~~~~~-~~~~v~~~~~~- 210 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIK--VINIVRRKEQVDLLKK----IGAEY-VL--NSSDPD-FLEDLKELIAK- 210 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHH----cCCcE-EE--ECCCcc-HHHHHHHHhCC-
Confidence 4544544 599999999988766667887 8888887766544333 23321 22 222222 22222222211
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
..+|+++.+.|.
T Consensus 211 ~~~d~vid~~g~ 222 (324)
T cd08291 211 LNATIFFDAVGG 222 (324)
T ss_pred CCCcEEEECCCc
Confidence 259999998884
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.28 Score=45.42 Aligned_cols=42 Identities=26% Similarity=0.270 Sum_probs=35.9
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA 67 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~ 67 (282)
...+.||+++|.|.+ .||+.+|+.|...|++ |+++.+++...
T Consensus 249 ~~~LaGKtVgVIG~G-~IGr~vA~rL~a~Ga~--ViV~e~dp~~a 290 (476)
T PTZ00075 249 DVMIAGKTVVVCGYG-DVGKGCAQALRGFGAR--VVVTEIDPICA 290 (476)
T ss_pred CCCcCCCEEEEECCC-HHHHHHHHHHHHCCCE--EEEEeCCchhH
Confidence 467899999999977 5999999999999987 88888876543
|
|
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.35 Score=43.77 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=34.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL 70 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~ 70 (282)
.|.+++|+|+++++|.+++..+...|++ ++.++++.++.+.+
T Consensus 193 ~g~~vlV~ga~g~iG~a~~~lak~~G~~--vv~~~~s~~~~~~~ 234 (393)
T cd08246 193 PGDNVLIWGASGGLGSMAIQLARAAGAN--PVAVVSSEEKAEYC 234 (393)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCe--EEEEeCCHHHHHHH
Confidence 4789999999999999999888888987 77777766655433
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.35 Score=43.92 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=32.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT 68 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~ 68 (282)
.|.+++|+|+++++|.++++.+...|++ ++.++++.++.+
T Consensus 189 ~g~~vlV~Ga~g~vG~~ai~~ak~~G~~--vi~~~~~~~~~~ 228 (398)
T TIGR01751 189 PGDNVLIWGAAGGLGSYATQLARAGGGN--PVAVVSSPEKAE 228 (398)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCe--EEEEcCCHHHHH
Confidence 4789999999999999999888888987 777766655443
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.32 Score=36.75 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=25.8
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeec
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCR 62 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r 62 (282)
+.|.|+||.||.....-+.++..++.|+...-
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa 32 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSA 32 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEc
Confidence 57899999999999988888886656665544
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.3 Score=43.35 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=31.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT 68 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~ 68 (282)
.|++++|+|+ +++|.+.++.+...|++ .|+.++++.++.+
T Consensus 160 ~g~~vlV~G~-g~vG~~~~~~a~~~G~~-~v~~~~~~~~~~~ 199 (347)
T PRK10309 160 EGKNVIIIGA-GTIGLLAIQCAVALGAK-SVTAIDINSEKLA 199 (347)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEECCCHHHHH
Confidence 4889999974 99999999888888986 3567777776654
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.18 Score=45.54 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=30.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
+.+++.|.||||-+|.++.+.|.++.. +.|..++++...
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~-~el~~l~s~~sa 75 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD-FEITVMTADRKA 75 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC-CeEEEEEChhhc
Confidence 456899999999999999999999932 247777765443
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=1.3 Score=39.15 Aligned_cols=78 Identities=21% Similarity=0.136 Sum_probs=49.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-ccccccc---CCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNR---FPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~---~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
+.+++.|.| +|.+|..++..++..|.. .|++.+.+++.++. ..+.... .+....+.. .+|.++
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~gl~-~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~--~~d~~~--------- 71 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLKNLG-DVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIG--TNNYED--------- 71 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCC-eEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEE--CCCHHH---------
Confidence 346899999 588999999999999962 39999999886532 2222211 111222221 123221
Q ss_pred HHcCCccEEEECcccCC
Q 023441 103 EKYGSLNLLINASGILS 119 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~ 119 (282)
+..-|++|.++|...
T Consensus 72 --l~~aDiVI~tag~~~ 86 (321)
T PTZ00082 72 --IAGSDVVIVTAGLTK 86 (321)
T ss_pred --hCCCCEEEECCCCCC
Confidence 236899999999864
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.61 Score=42.23 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=34.0
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP 64 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~ 64 (282)
..++.||++.|.| .|.||+++|+.|...|.+ |+..+|..
T Consensus 194 ~~~L~gktVGIVG-~G~IG~~vA~~L~afG~~--V~~~d~~~ 232 (386)
T PLN03139 194 AYDLEGKTVGTVG-AGRIGRLLLQRLKPFNCN--LLYHDRLK 232 (386)
T ss_pred CcCCCCCEEEEEe-ecHHHHHHHHHHHHCCCE--EEEECCCC
Confidence 3679999999999 578999999999999987 88888764
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.27 Score=43.42 Aligned_cols=40 Identities=20% Similarity=0.157 Sum_probs=34.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT 68 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~ 68 (282)
.|.+++|.|+++++|.++++.+.+.|.+ |+.+.+++++.+
T Consensus 165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~--v~~~~~~~~~~~ 204 (341)
T cd08297 165 PGDWVVISGAGGGLGHLGVQYAKAMGLR--VIAIDVGDEKLE 204 (341)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCe--EEEEeCCHHHHH
Confidence 4789999999999999999988889987 888888876554
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.22 Score=44.29 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=49.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc-
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY- 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~- 105 (282)
.|++++|+|+ +++|.+.++.+...|+. .|+..+++.++.+.+.+ .+... ..|..+.+-.+ .+.+..
T Consensus 172 ~g~~vlI~g~-g~vG~~a~q~a~~~G~~-~v~~~~~~~~~~~~~~~----~ga~~---~i~~~~~~~~~----~l~~~~~ 238 (351)
T cd08233 172 PGDTALVLGA-GPIGLLTILALKAAGAS-KIIVSEPSEARRELAEE----LGATI---VLDPTEVDVVA----EVRKLTG 238 (351)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHH----hCCCE---EECCCccCHHH----HHHHHhC
Confidence 5889999985 89999999888888983 37777777666543322 23221 12444333222 222222
Q ss_pred -CCccEEEECccc
Q 023441 106 -GSLNLLINASGI 117 (282)
Q Consensus 106 -~~id~lv~~ag~ 117 (282)
+.+|+++.+.|.
T Consensus 239 ~~~~d~vid~~g~ 251 (351)
T cd08233 239 GGGVDVSFDCAGV 251 (351)
T ss_pred CCCCCEEEECCCC
Confidence 249999999884
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.31 Score=43.33 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=34.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN 65 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~ 65 (282)
.++.||++.|.|. |.||+++|+.|...|.+ |+..+|+..
T Consensus 146 ~~L~gktvgIiG~-G~IG~~vA~~l~~~G~~--V~~~d~~~~ 184 (333)
T PRK13243 146 YDVYGKTIGIIGF-GRIGQAVARRAKGFGMR--ILYYSRTRK 184 (333)
T ss_pred cCCCCCEEEEECc-CHHHHHHHHHHHHCCCE--EEEECCCCC
Confidence 5789999999998 99999999999999987 888888654
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.3 Score=39.54 Aligned_cols=77 Identities=21% Similarity=0.246 Sum_probs=51.3
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccC--CCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRF--PERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~--~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
+.+.|+|+ |.+|..+|..|+..|....+++.+.+++.++. ..++.... ..+. -+..+ .|.++ +
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~-~i~~~-~dy~~-----------~ 103 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRT-KILAS-TDYAV-----------T 103 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCC-EEEeC-CCHHH-----------h
Confidence 68999996 99999999999998865569999998877654 33333211 1122 22211 12221 2
Q ss_pred CCccEEEECcccCC
Q 023441 106 GSLNLLINASGILS 119 (282)
Q Consensus 106 ~~id~lv~~ag~~~ 119 (282)
..-|++|.+||...
T Consensus 104 ~daDiVVitAG~~~ 117 (350)
T PLN02602 104 AGSDLCIVTAGARQ 117 (350)
T ss_pred CCCCEEEECCCCCC
Confidence 36899999999864
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.38 Score=43.13 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=48.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCCh-hHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE-STIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~-~~~~~~~~~~~~~~ 105 (282)
.|.+++|+|+ +++|...+......|+. +|+.++++.++.+.+.+ .+.. .+ .|..+. ..+.+.+.+...
T Consensus 184 ~g~~vlV~G~-g~vG~~~~~~a~~~G~~-~Vi~~~~~~~~~~~~~~----~ga~-~~--i~~~~~~~~~~~~~~~~~~-- 252 (365)
T cd08277 184 PGSTVAVFGL-GAVGLSAIMGAKIAGAS-RIIGVDINEDKFEKAKE----FGAT-DF--INPKDSDKPVSEVIREMTG-- 252 (365)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHH----cCCC-cE--eccccccchHHHHHHHHhC--
Confidence 5899999975 99999998877778873 38888887766543322 2221 11 122221 112222333222
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+.+|+++.+.|.
T Consensus 253 ~g~d~vid~~g~ 264 (365)
T cd08277 253 GGVDYSFECTGN 264 (365)
T ss_pred CCCCEEEECCCC
Confidence 369999999885
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.57 Score=40.92 Aligned_cols=85 Identities=19% Similarity=0.085 Sum_probs=58.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.++||.|| +.||...-+..-.-|+. .|++.+-.+.+++.+.+ .|.++......-++.+.+.+.+.....+.
T Consensus 169 ~Gs~vLV~GA-GPIGl~t~l~Aka~GA~-~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~- 241 (354)
T KOG0024|consen 169 KGSKVLVLGA-GPIGLLTGLVAKAMGAS-DVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALGKK- 241 (354)
T ss_pred cCCeEEEECC-cHHHHHHHHHHHHcCCC-cEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhcccc-
Confidence 4789999987 67888888888888987 68888887777664444 35555444444445555555555544432
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
.+|+.|.|+|..
T Consensus 242 ~~d~~~dCsG~~ 253 (354)
T KOG0024|consen 242 QPDVTFDCSGAE 253 (354)
T ss_pred CCCeEEEccCch
Confidence 399999999975
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=1.3 Score=41.65 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=31.8
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP 64 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~ 64 (282)
++++++|+++|.| -|+.|.++|+.|.++|+. |.+.+.+.
T Consensus 2 ~~~~~~~~i~v~G-~G~sG~s~a~~L~~~G~~--v~~~D~~~ 40 (498)
T PRK02006 2 FGDLQGPMVLVLG-LGESGLAMARWCARHGAR--LRVADTRE 40 (498)
T ss_pred ccccCCCEEEEEe-ecHhHHHHHHHHHHCCCE--EEEEcCCC
Confidence 3567889999999 446788899999999987 88877654
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.22 Score=43.27 Aligned_cols=38 Identities=29% Similarity=0.298 Sum_probs=33.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEee-cC
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RN 63 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~-r~ 63 (282)
.+++||+++|.|-++-+|+.+|..|+++|+. |.++. |+
T Consensus 154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~t--Vtv~~~rT 192 (296)
T PRK14188 154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANAT--VTIAHSRT 192 (296)
T ss_pred CCCCCCEEEEEcCCcchHHHHHHHHHhCCCE--EEEECCCC
Confidence 4789999999999999999999999999988 77763 44
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.39 Score=43.70 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=47.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|. |.++||..++..+...|++ .|+..+++.++++.+.+ .+.. ..|.++..++.+.+.++... .
T Consensus 185 ~g~~VlV~-G~G~iG~~aiqlAk~~Ga~-~vi~~d~~~~r~~~a~~----~Ga~----~v~~~~~~~~~~~v~~~~~~-~ 253 (393)
T TIGR02819 185 PGSTVYIA-GAGPVGLAAAASAQLLGAA-VVIVGDLNPARLAQARS----FGCE----TVDLSKDATLPEQIEQILGE-P 253 (393)
T ss_pred CCCEEEEE-CCCHHHHHHHHHHHHcCCc-eEEEeCCCHHHHHHHHH----cCCe----EEecCCcccHHHHHHHHcCC-C
Confidence 58899995 5689999998877778987 23444555444332222 2332 13333322333333332221 2
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
.+|+++.++|..
T Consensus 254 g~Dvvid~~G~~ 265 (393)
T TIGR02819 254 EVDCAVDCVGFE 265 (393)
T ss_pred CCcEEEECCCCc
Confidence 599999999964
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.5 Score=41.76 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=30.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP 64 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~ 64 (282)
.|++++|.|+++++|.+++......|++ ++.++++.
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~--vi~~~~~~ 212 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAI--VIAVAGAA 212 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCE--EEEEeCch
Confidence 4899999999999999999888889988 77766543
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.49 Score=43.78 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=35.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
..+.||+++|.|.. .||+.+|+.+...|++ |++..+++.+
T Consensus 250 i~LaGKtVvViGyG-~IGr~vA~~aka~Ga~--VIV~e~dp~r 289 (477)
T PLN02494 250 VMIAGKVAVICGYG-DVGKGCAAAMKAAGAR--VIVTEIDPIC 289 (477)
T ss_pred CccCCCEEEEECCC-HHHHHHHHHHHHCCCE--EEEEeCCchh
Confidence 44789999999987 8999999999999987 8888888765
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.61 Score=42.11 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=46.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|.|+ +++|...++.....|++ |+.++++.++..... .+.+.... .|..+.+.+. +..+
T Consensus 178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~--Vi~~~~~~~~~~~~a---~~lGa~~~---i~~~~~~~v~-------~~~~ 241 (375)
T PLN02178 178 SGKRLGVNGL-GGLGHIAVKIGKAFGLR--VTVISRSSEKEREAI---DRLGADSF---LVTTDSQKMK-------EAVG 241 (375)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHHcCCe--EEEEeCChHHhHHHH---HhCCCcEE---EcCcCHHHHH-------HhhC
Confidence 5889999986 89999999887788987 887777654422211 22233211 1333322222 2224
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.++|.
T Consensus 242 ~~D~vid~~G~ 252 (375)
T PLN02178 242 TMDFIIDTVSA 252 (375)
T ss_pred CCcEEEECCCc
Confidence 68999999875
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=1.7 Score=37.05 Aligned_cols=81 Identities=20% Similarity=0.172 Sum_probs=53.0
Q ss_pred EEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCccccc-----------ccccccCCCceeEEEeeCCChhHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATGL-----------LDLKNRFPERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~~-----------~~~~~~~~~~v~~~~~Dls~~~~~~~~ 97 (282)
++.|+|++|.+|+.+++.+.+. +.+ .+.+++++.+..... .+.+. .+ =+..|++.++...+.
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~e-lvav~d~~~~~~~~~~~~~i~~~~dl~~ll~----~~-DvVid~t~p~~~~~~ 76 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLE-LVAAVDRPGSPLVGQGALGVAITDDLEAVLA----DA-DVLIDFTTPEATLEN 76 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCE-EEEEEecCCccccccCCCCccccCCHHHhcc----CC-CEEEECCCHHHHHHH
Confidence 6899999999999999888865 444 244456665433211 11111 11 256788888888777
Q ss_pred HHHHHHHcCCccEEEECcccC
Q 023441 98 AKSIKEKYGSLNLLINASGIL 118 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~ 118 (282)
+..+.+. ++++++-..|..
T Consensus 77 ~~~al~~--G~~vvigttG~s 95 (257)
T PRK00048 77 LEFALEH--GKPLVIGTTGFT 95 (257)
T ss_pred HHHHHHc--CCCEEEECCCCC
Confidence 7777665 578887776654
|
|
| >PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.3 Score=42.80 Aligned_cols=80 Identities=19% Similarity=0.207 Sum_probs=49.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+++|.|+++.+|.++++.....|.+ |+.++++.++.+.+. +.+.. .++ |..+.+ ..+.+...... .
T Consensus 140 ~g~~vlI~g~~g~ig~~~~~lak~~G~~--v~~~~~~~~~~~~~~----~~g~~-~~~--~~~~~~-~~~~~~~~~~~-~ 208 (327)
T PRK10754 140 PDEQFLFHAAAGGVGLIACQWAKALGAK--LIGTVGSAQKAQRAK----KAGAW-QVI--NYREEN-IVERVKEITGG-K 208 (327)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHH----HCCCC-EEE--cCCCCc-HHHHHHHHcCC-C
Confidence 5789999999999999999888888987 888777766544332 22321 222 222222 22222222211 2
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.+.|.
T Consensus 209 ~~d~vl~~~~~ 219 (327)
T PRK10754 209 KVRVVYDSVGK 219 (327)
T ss_pred CeEEEEECCcH
Confidence 48999988763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 282 | ||||
| 1sny_A | 267 | Carbonyl Reductase Sniffer Of D. Melanogaster Lengt | 1e-19 | ||
| 1yo6_A | 250 | Crystal Structure Of The Putative Carbonyl Reductas | 8e-15 | ||
| 1i01_A | 244 | Crystal Structure Of Beta-Ketoacyl [acyl Carrier Pr | 3e-11 | ||
| 3m1a_A | 281 | The Crystal Structure Of A Short-Chain Dehydrogenas | 6e-11 | ||
| 3tzh_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 8e-11 | ||
| 1q7c_A | 244 | The Structure Of Betaketoacyl-[acp] Reductase Y151f | 8e-11 | ||
| 3rsh_A | 251 | Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reduc | 2e-10 | ||
| 2cfc_A | 250 | Structural Basis For Stereo Selectivity In The (R)- | 3e-10 | ||
| 3tzc_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 5e-10 | ||
| 3ftp_A | 270 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 8e-10 | ||
| 3tzk_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 8e-10 | ||
| 3u09_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 1e-09 | ||
| 2nm0_A | 253 | Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl | 4e-09 | ||
| 3kzv_A | 254 | The Crystal Structure Of A Cytoplasmic Protein With | 2e-08 | ||
| 3op4_A | 248 | Crystal Structure Of Putative 3-Ketoacyl-(Acyl-Carr | 2e-08 | ||
| 1vl8_A | 267 | Crystal Structure Of Gluconate 5-dehydrogenase (tm0 | 3e-08 | ||
| 3v2g_A | 271 | Crystal Structure Of A DehydrogenaseREDUCTASE FROM | 3e-08 | ||
| 2pnf_A | 248 | Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl- | 7e-08 | ||
| 1nff_A | 260 | Crystal Structure Of Rv2002 Gene Product From Mycob | 2e-07 | ||
| 2hq1_A | 247 | Crystal Structure Of Orf 1438 A Putative GlucoseRIB | 2e-07 | ||
| 1nxq_A | 251 | Crystal Structure Of R-Alcohol Dehydrogenase (Radh) | 3e-07 | ||
| 4dml_A | 269 | 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Syn | 4e-07 | ||
| 1zjy_A | 251 | Structure Of R-Specific Alcohol Dehydrogenase (Muta | 4e-07 | ||
| 3nyw_A | 250 | Crystal Structure Of A Betaketoacyl-[acp] Reductase | 4e-07 | ||
| 2cf2_E | 226 | Architecture Of Mammalian Fatty Acid Synthase Lengt | 4e-07 | ||
| 2zk7_A | 257 | Structure Of A C-Terminal Deletion Mutant Of Thermo | 5e-07 | ||
| 2ntn_A | 267 | Crystal Structure Of Maba-c60v/g139a/s144l Length = | 5e-07 | ||
| 2dtd_A | 264 | Structure Of Thermoplasma Acidophilum Aldohexose De | 5e-07 | ||
| 3gvc_A | 277 | Crystal Structure Of Probable Short-Chain Dehydroge | 7e-07 | ||
| 1k2w_A | 256 | Crystal Structure Of Sorbitol Dehydrogenase From R. | 8e-07 | ||
| 2rhr_B | 277 | P94l Actinorhodin Ketordeuctase Mutant, With Nadph | 9e-07 | ||
| 4afn_A | 269 | Crystal Structure Of 3-ketoacyl-(acyl-carrier-prote | 9e-07 | ||
| 2ehd_A | 234 | Crystal Structure Analysis Of Oxidoreductase Length | 9e-07 | ||
| 1uzm_A | 247 | Maba From Mycobacterium Tuberculosis Length = 247 | 1e-06 | ||
| 3csd_B | 281 | Actinorhodin Polyketide Ketoreductase Mutant P94l B | 1e-06 | ||
| 3sj7_A | 252 | Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) F | 1e-06 | ||
| 1uzl_A | 247 | Maba From Mycobacterium Tuberculosis Length = 247 | 1e-06 | ||
| 4dbz_A | 281 | Crystal Structure Of V151l Actinorhodin Polyketide | 2e-06 | ||
| 4dc1_A | 281 | Crystal Structure Of Y202f Actinorhodin Polyketide | 2e-06 | ||
| 1w4z_A | 281 | Structure Of Actinorhodin Polyketide (Actiii) Reduc | 2e-06 | ||
| 4dc0_A | 281 | Crystal Structure Of F189w Actinorhodin Polyketide | 2e-06 | ||
| 2rh4_A | 277 | Actinorhodin Ketoreductase, Actkr, With Nadph And I | 2e-06 | ||
| 1x7g_A | 261 | Actinorhodin Polyketide Ketoreductase, Act Kr, With | 2e-06 | ||
| 2ae2_A | 260 | Tropinone Reductase-Ii Complexed With Nadp+ And Pse | 3e-06 | ||
| 1ipe_A | 259 | Tropinone Reductase-Ii Complexed With Nadph Length | 3e-06 | ||
| 3oic_A | 258 | Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl | 3e-06 | ||
| 2hsd_A | 253 | The Refined Three-Dimensional Structure Of 3alpha,2 | 4e-06 | ||
| 1nfr_A | 260 | Rv2002 Gene Product From Mycobacterium Tuberculosis | 4e-06 | ||
| 4dqx_A | 277 | Crystal Structure Of A Short Chain Dehydrogenase Fr | 5e-06 | ||
| 3osu_A | 246 | Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Pro | 6e-06 | ||
| 2et6_A | 604 | (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candid | 7e-06 | ||
| 2uvd_A | 246 | The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier | 7e-06 | ||
| 1hdc_A | 254 | Mechanism Of Inhibition Of 3alpha,20beta-Hydroxyste | 8e-06 | ||
| 1hxh_A | 253 | Comamonas Testosteroni 3beta17BETA HYDROXYSTEROID D | 8e-06 | ||
| 1xg5_A | 279 | Structure Of Human Putative Dehydrogenase Mgc4172 I | 8e-06 | ||
| 3cxr_A | 291 | Crystal Structure Of Gluconate 5-Dehydrogase From S | 1e-05 | ||
| 3icc_A | 255 | Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Car | 1e-05 | ||
| 4iqg_C | 271 | Crystal Structure Of Bpro0239 Oxidoreductase From P | 1e-05 | ||
| 3vtz_A | 269 | Structure Of Thermoplasma Volcanium Aldohexose Dehy | 2e-05 | ||
| 3o26_A | 311 | The Structure Of Salutaridine Reductase From Papave | 2e-05 | ||
| 4eso_A | 255 | Crystal Structure Of A Putative Oxidoreductase Prot | 2e-05 | ||
| 3vc7_A | 254 | Crystal Structure Of A Putative Oxidoreductase From | 2e-05 | ||
| 2c07_A | 285 | Oxoacyl-Acp Reductase Of Plasmodium Falciparum Leng | 3e-05 | ||
| 1ae1_A | 273 | Tropinone Reductase-I Complex With Nadp Length = 27 | 4e-05 | ||
| 2fwm_X | 250 | Crystal Structure Of E. Coli Enta, A 2,3-Dihydrodih | 4e-05 | ||
| 3rkr_A | 262 | Crystal Structure Of A Metagenomic Short-Chain Oxid | 4e-05 | ||
| 2jap_A | 247 | Clavulanic Acid Dehydrogenase: Structural And Bioch | 5e-05 | ||
| 3tzq_B | 271 | Crystal Structure Of A Short-Chain Type Dehydrogena | 6e-05 | ||
| 3ai1_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 8e-05 | ||
| 2jah_A | 247 | Biochemical And Structural Analysis Of The Clavulan | 1e-04 | ||
| 4e4y_A | 244 | The Crystal Structure Of A Short Chain Dehydrogenas | 1e-04 | ||
| 1h5q_A | 265 | Mannitol Dehydrogenase From Agaricus Bisporus Lengt | 1e-04 | ||
| 3tl3_A | 257 | Structure Of A Short-Chain Type DehydrogenaseREDUCT | 1e-04 | ||
| 1edo_A | 244 | The X-Ray Structure Of Beta-Keto Acyl Carrier Prote | 2e-04 | ||
| 3rku_A | 287 | Substrate Fingerprint And The Structure Of Nadp+ De | 2e-04 | ||
| 3asu_A | 248 | Crystal Structure Of Serine Dehydrogenase From Esch | 2e-04 | ||
| 1iol_A | 327 | Estrogenic 17-beta Hydroxysteroid Dehydrogenase Com | 2e-04 | ||
| 4e6p_A | 259 | Crystal Structure Of A Probable Sorbitol Dehydrogen | 3e-04 | ||
| 2b4q_A | 276 | Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex | 3e-04 | ||
| 3ai3_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 3e-04 | ||
| 3tox_A | 280 | Crystal Structure Of A Short Chain Dehydrogenase In | 3e-04 | ||
| 3ioy_A | 319 | Structure Of Putative Short-Chain Dehydrogenase (Sa | 3e-04 | ||
| 1a27_A | 289 | Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C | 4e-04 | ||
| 1x1e_A | 239 | Crystal Structure Of Tt0495 Protein From Thermus Th | 4e-04 | ||
| 1fds_A | 327 | Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C | 5e-04 | ||
| 1fdw_A | 327 | Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 M | 5e-04 | ||
| 1fdu_A | 327 | Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 M | 5e-04 | ||
| 1equ_A | 327 | Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin | 5e-04 | ||
| 2pfg_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Big | 7e-04 | ||
| 4iin_A | 271 | Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Car | 7e-04 | ||
| 3rih_A | 293 | Crystal Structure Of A Putative Short Chain Dehydro | 9e-04 | ||
| 2gdz_A | 267 | Crystal Structure Of 15-Hydroxyprostaglandin Dehydr | 9e-04 | ||
| 2hrb_A | 274 | Crystal Structure Of Human Carbonyl Reductase 3, Co | 9e-04 |
| >pdb|1SNY|A Chain A, Carbonyl Reductase Sniffer Of D. Melanogaster Length = 267 | Back alignment and structure |
|
| >pdb|1YO6|A Chain A, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans Length = 250 | Back alignment and structure |
|
| >pdb|1I01|A Chain A, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein] Reductase From E. Coli. Length = 244 | Back alignment and structure |
|
| >pdb|3M1A|A Chain A, The Crystal Structure Of A Short-Chain Dehydrogenase From Streptomyces Avermitilis To 2a Length = 281 | Back alignment and structure |
|
| >pdb|3TZH|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(F187a) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|1Q7C|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant In Complex With Nadph Fragment Length = 244 | Back alignment and structure |
|
| >pdb|3RSH|A Chain A, Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reductase (Fabg) From Vibrio Cholerae O1 Complexed With Nadp+ (Space Group P62) Length = 251 | Back alignment and structure |
|
| >pdb|2CFC|A Chain A, Structural Basis For Stereo Selectivity In The (R)- And (S)- Hydroxypropylethane Thiosulfonate Dehydrogenases Length = 250 | Back alignment and structure |
|
| >pdb|3TZC|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(Y155f) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|3FTP|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Burkholderia Pseudomallei At 2.05 A Resolution Length = 270 | Back alignment and structure |
|
| >pdb|3TZK|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92a) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|3U09|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92d) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|2NM0|A Chain A, Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl Carrier Protein Reductase From Streptomyces Coelicolor A3(2) Length = 253 | Back alignment and structure |
|
| >pdb|3KZV|A Chain A, The Crystal Structure Of A Cytoplasmic Protein With Unknown Function From Saccharomyces Cerevisiae Length = 254 | Back alignment and structure |
|
| >pdb|3OP4|A Chain A, Crystal Structure Of Putative 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 In Complex With Nadp+ Length = 248 | Back alignment and structure |
|
| >pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441) From Thermotoga Maritima At 2.07 A Resolution Length = 267 | Back alignment and structure |
|
| >pdb|3V2G|A Chain A, Crystal Structure Of A DehydrogenaseREDUCTASE FROM SINORHIZOBIUM Meliloti 1021 Length = 271 | Back alignment and structure |
|
| >pdb|2PNF|A Chain A, Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl-carrier Protein) Reductase Length = 248 | Back alignment and structure |
|
| >pdb|1NFF|A Chain A, Crystal Structure Of Rv2002 Gene Product From Mycobacterium Tuberculosis Length = 260 | Back alignment and structure |
|
| >pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL Dehydrogenase From Clostridium Thermocellum Length = 247 | Back alignment and structure |
|
| >pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh) (Apoenyzme) From Lactobacillus Brevis Length = 251 | Back alignment and structure |
|
| >pdb|4DML|A Chain A, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Synechococcus Elongatus Pcc 7942 Length = 269 | Back alignment and structure |
|
| >pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus Brevis In Complex With Phenylethanol And Nadh Length = 251 | Back alignment and structure |
|
| >pdb|3NYW|A Chain A, Crystal Structure Of A Betaketoacyl-[acp] Reductase (Fabg) From Bacteroides Thetaiotaomicron Length = 250 | Back alignment and structure |
|
| >pdb|2CF2|E Chain E, Architecture Of Mammalian Fatty Acid Synthase Length = 226 | Back alignment and structure |
|
| >pdb|2ZK7|A Chain A, Structure Of A C-Terminal Deletion Mutant Of Thermoplasma Acidophilum Aldohexose Dehydrogenase (Aldt) Length = 257 | Back alignment and structure |
|
| >pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l Length = 267 | Back alignment and structure |
|
| >pdb|2DTD|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose Dehydrogenase (aldt) In Ligand-free Form Length = 264 | Back alignment and structure |
|
| >pdb|3GVC|A Chain A, Crystal Structure Of Probable Short-Chain Dehydrogenase- Reductase From Mycobacterium Tuberculosis Length = 277 | Back alignment and structure |
|
| >pdb|1K2W|A Chain A, Crystal Structure Of Sorbitol Dehydrogenase From R. Sphaeroides Length = 256 | Back alignment and structure |
|
| >pdb|2RHR|B Chain B, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And Inhibitor Emodin Length = 277 | Back alignment and structure |
|
| >pdb|4AFN|A Chain A, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein) Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a Resolution Length = 269 | Back alignment and structure |
|
| >pdb|2EHD|A Chain A, Crystal Structure Analysis Of Oxidoreductase Length = 234 | Back alignment and structure |
|
| >pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis Length = 247 | Back alignment and structure |
|
| >pdb|3CSD|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To Nadph And The Inhibitor Emodin Length = 281 | Back alignment and structure |
|
| >pdb|3SJ7|A Chain A, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From Staphylococcus Aureus Complex With Nadph Length = 252 | Back alignment and structure |
|
| >pdb|1UZL|A Chain A, Maba From Mycobacterium Tuberculosis Length = 247 | Back alignment and structure |
|
| >pdb|4DBZ|A Chain A, Crystal Structure Of V151l Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|4DC1|A Chain A, Crystal Structure Of Y202f Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|1W4Z|A Chain A, Structure Of Actinorhodin Polyketide (Actiii) Reductase Length = 281 | Back alignment and structure |
|
| >pdb|4DC0|A Chain A, Crystal Structure Of F189w Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|2RH4|A Chain A, Actinorhodin Ketoreductase, Actkr, With Nadph And Inhibitor Emodin Length = 277 | Back alignment and structure |
|
| >pdb|1X7G|A Chain A, Actinorhodin Polyketide Ketoreductase, Act Kr, With Nadp Bound Length = 261 | Back alignment and structure |
|
| >pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With Nadp+ And Pseudotropine Length = 260 | Back alignment and structure |
|
| >pdb|1IPE|A Chain A, Tropinone Reductase-Ii Complexed With Nadph Length = 259 | Back alignment and structure |
|
| >pdb|3OIC|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From B. Subtilis (Apo Form) Length = 258 | Back alignment and structure |
|
| >pdb|2HSD|A Chain A, The Refined Three-Dimensional Structure Of 3alpha,20beta- Hydroxysteroid Dehydrogenase And Possible Roles Of The Residues Conserved In Short-Chain Dehydrogenases Length = 253 | Back alignment and structure |
|
| >pdb|1NFR|A Chain A, Rv2002 Gene Product From Mycobacterium Tuberculosis Length = 260 | Back alignment and structure |
|
| >pdb|4DQX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From Rhizobium Etli Cfn 42 Length = 277 | Back alignment and structure |
|
| >pdb|3OSU|A Chain A, Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Protein Reductase, Fabg, From Staphylococcus Aureus Length = 246 | Back alignment and structure |
|
| >pdb|2ET6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candida Tropicalis Peroxisomal Multifunctional Enzyme Type 2 Length = 604 | Back alignment and structure |
|
| >pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis (Ba3989) Length = 246 | Back alignment and structure |
|
| >pdb|1HDC|A Chain A, Mechanism Of Inhibition Of 3alpha,20beta-Hydroxysteroid Dehydrogenase By A Licorice-Derived Steroidal Inhibitor Length = 254 | Back alignment and structure |
|
| >pdb|1HXH|A Chain A, Comamonas Testosteroni 3beta17BETA HYDROXYSTEROID Dehydrogenase Length = 253 | Back alignment and structure |
|
| >pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In Complex With Nadp Length = 279 | Back alignment and structure |
|
| >pdb|3CXR|A Chain A, Crystal Structure Of Gluconate 5-Dehydrogase From Streptococcus Suis Type 2 Length = 291 | Back alignment and structure |
|
| >pdb|3ICC|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis At 1.87 A Resolution Length = 255 | Back alignment and structure |
|
| >pdb|4IQG|C Chain C, Crystal Structure Of Bpro0239 Oxidoreductase From Polaromonas Sp. Js666 In Nadp Bound Form Length = 271 | Back alignment and structure |
|
| >pdb|3VTZ|A Chain A, Structure Of Thermoplasma Volcanium Aldohexose Dehydrogenase Length = 269 | Back alignment and structure |
|
| >pdb|3O26|A Chain A, The Structure Of Salutaridine Reductase From Papaver Somniferum Length = 311 | Back alignment and structure |
|
| >pdb|4ESO|A Chain A, Crystal Structure Of A Putative Oxidoreductase Protein From Sinorhizobium Meliloti 1021 In Complex With Nadp Length = 255 | Back alignment and structure |
|
| >pdb|3VC7|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Sinorhizobium Meliloti 1021 Length = 254 | Back alignment and structure |
|
| >pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum Length = 285 | Back alignment and structure |
|
| >pdb|1AE1|A Chain A, Tropinone Reductase-I Complex With Nadp Length = 273 | Back alignment and structure |
|
| >pdb|2FWM|X Chain X, Crystal Structure Of E. Coli Enta, A 2,3-Dihydrodihydroxy Benzoate Dehydrogenase Length = 250 | Back alignment and structure |
|
| >pdb|3RKR|A Chain A, Crystal Structure Of A Metagenomic Short-Chain Oxidoreductase (Sdr) In Complex With Nadp Length = 262 | Back alignment and structure |
|
| >pdb|2JAP|A Chain A, Clavulanic Acid Dehydrogenase: Structural And Biochemical Analysis Of The Final Step In The Biosynthesis Of The Beta- Lactamase Inhibitor Clavulanic Acid Length = 247 | Back alignment and structure |
|
| >pdb|3TZQ|B Chain B, Crystal Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Marinum Length = 271 | Back alignment and structure |
|
| >pdb|3AI1|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Reveals The Structure Bases Of Its Catalytic Mechanism And High Substrate Selectivity Length = 263 | Back alignment and structure |
|
| >pdb|2JAH|A Chain A, Biochemical And Structural Analysis Of The Clavulanic Acid Dehydeogenase (Cad) From Streptomyces Clavuligerus Length = 247 | Back alignment and structure |
|
| >pdb|4E4Y|A Chain A, The Crystal Structure Of A Short Chain Dehydrogenase Family Protein From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 244 | Back alignment and structure |
|
| >pdb|1H5Q|A Chain A, Mannitol Dehydrogenase From Agaricus Bisporus Length = 265 | Back alignment and structure |
|
| >pdb|3TL3|A Chain A, Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Ulcerans Length = 257 | Back alignment and structure |
|
| >pdb|1EDO|A Chain A, The X-Ray Structure Of Beta-Keto Acyl Carrier Protein Reductase From Brassica Napus Complexed With Nadp+ Length = 244 | Back alignment and structure |
|
| >pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent Serine Dehydrogenase From Saccharomyces Cerevisiae Complexed With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|3ASU|A Chain A, Crystal Structure Of Serine Dehydrogenase From Escherichia Coli Length = 248 | Back alignment and structure |
|
| >pdb|1IOL|A Chain A, Estrogenic 17-beta Hydroxysteroid Dehydrogenase Complexed 17-beta- Estradiol Length = 327 | Back alignment and structure |
|
| >pdb|4E6P|A Chain A, Crystal Structure Of A Probable Sorbitol Dehydrogenase (Target Psi- 012078) From Sinorhizobium Meliloti 1021 Length = 259 | Back alignment and structure |
|
| >pdb|2B4Q|A Chain A, Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex Length = 276 | Back alignment and structure |
|
| >pdb|3AI3|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Length = 263 | Back alignment and structure |
|
| >pdb|3TOX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase In Complex With Nad(P) From Sinorhizobium Meliloti 1021 Length = 280 | Back alignment and structure |
|
| >pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase (Saro_0793) From Novosphingobium Aromaticivorans Length = 319 | Back alignment and structure |
|
| >pdb|1A27|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C-Terminal Deletion Mutant Complexed With Estradiol And Nadp+ Length = 289 | Back alignment and structure |
|
| >pdb|1X1E|A Chain A, Crystal Structure Of Tt0495 Protein From Thermus Thermophilus Hb8 Length = 239 | Back alignment and structure |
|
| >pdb|1FDS|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Complexed With 17- Beta-Estradiol Length = 327 | Back alignment and structure |
|
| >pdb|1FDW|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant H221q Complexed With Estradiol Length = 327 | Back alignment and structure |
|
| >pdb|1FDU|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant H221l Complexed With Estradiol And Nadp+ Length = 327 | Back alignment and structure |
|
| >pdb|1EQU|A Chain A, Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin Complexed With Nadp+ Length = 327 | Back alignment and structure |
|
| >pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2 Length = 276 | Back alignment and structure |
|
| >pdb|4IIN|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier Protein]reductase From Helicobacter Pylori 26695 Complexed With Nad+ Length = 271 | Back alignment and structure |
|
| >pdb|3RIH|A Chain A, Crystal Structure Of A Putative Short Chain Dehydrogenase Or Reductase From Mycobacterium Abscessus Length = 293 | Back alignment and structure |
|
| >pdb|2GDZ|A Chain A, Crystal Structure Of 15-Hydroxyprostaglandin Dehydrogenase Type1, Complexed With Nad+ Length = 267 | Back alignment and structure |
|
| >pdb|2HRB|A Chain A, Crystal Structure Of Human Carbonyl Reductase 3, Complexed With Nadp+ Length = 274 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 263 bits (673), Expect = 2e-88
Identities = 75/259 (28%), Positives = 113/259 (43%), Gaps = 24/259 (9%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV 90
L+ G +RG+GL K LL + TCRN A L DL + +L++DL
Sbjct: 25 LITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHS-NIHILEIDLRN 83
Query: 91 ESTIEASAKSIKEKYG--SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVG 148
+ I+ LN+L N +GI + V L+ + N V
Sbjct: 84 FDAYDKLVADIEGVTKDQGLNVLFNNAGIA------PKSARITAVRSQELLDTLQTNTVV 137
Query: 149 PILVIKHMSPLLKVG-----GTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
PI++ K PLLK + A + N+S+ +GSI N GG ++YR SK+ALN
Sbjct: 138 PIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALN 197
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINN 263
TKS+SV+ ++C+ LHPG V TD+ S +++ I+
Sbjct: 198 AATKSLSVDL--YPQRIMCVSLHPGWVKTDMGGS-------SAPLDVPTSTGQIVQTISK 248
Query: 264 IKSHDNGKFFAWDGQEIPW 282
+ NG F +DG + W
Sbjct: 249 LGEKQNGGFVNYDGTPLAW 267
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 249 bits (638), Expect = 3e-83
Identities = 75/262 (28%), Positives = 127/262 (48%), Gaps = 29/262 (11%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
+V GA+RGIGL +QL++ + +IAT R+ AT L +K+ R+ VL L +T +
Sbjct: 7 VVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKD---SRVHVLPLTVTCD 63
Query: 92 STIEASAKSIKEKYG--SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
+++ + E G L+LLIN +G+ L T + ++ + +VN
Sbjct: 64 KSLDTFVSKVGEIVGSDGLSLLINNAGV------LLSYGTNTEPNRAVIAEQLDVNTTSV 117
Query: 150 ILVIKHMSPLLKVG-----GTGIERDVAVVANLSARVGSIGDNRLGGWH----SYRASKA 200
+L+ + + PLLK G + A V +S+ +GSI DN G +YR SKA
Sbjct: 118 VLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKA 177
Query: 201 ALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNI 260
A+N ++++V+ K D V+ + PG V T+L T E S +L++
Sbjct: 178 AINMFGRTLAVDL--KDDNVLVVNFCPGWVQTNLGGK-------NAALTVEQSTAELISS 228
Query: 261 INNIKSHDNGKFFAWDGQEIPW 282
N + + NG+FF + + +
Sbjct: 229 FNKLDNSHNGRFFMRNLKPYEF 250
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-30
Identities = 62/304 (20%), Positives = 114/304 (37%), Gaps = 70/304 (23%)
Query: 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NGATGLLDLKNRFPE 79
S+ + V+LV G ++GIGL + L G V+ T R+ G + L+
Sbjct: 1 SSGIH----VALVTGGNKGIGLAIVRDLCRLFS-GDVVLTARDVTRGQAAVQQLQAEGLS 55
Query: 80 RLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLM 139
QLD+ +I A ++++YG L++L+N +GI P + E +
Sbjct: 56 -PRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVA--DPTPFHIQAEVT--- 109
Query: 140 LAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI--------------- 184
+ N G V + PL+K G R V N+S+ +
Sbjct: 110 --MKTNFFGTRDVCTELLPLIKPQG----RVV----NVSSIMSVRALKSCSPELQQKFRS 159
Query: 185 ---------------------GDNRLGGW--HSYRASKAALNQLTKSVSVEFG--RKKDP 219
G ++ GW +Y +K + L++ + + RK D
Sbjct: 160 ETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDK 219
Query: 220 VICILLHPGTVDTDLSRP-FQRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278
++ PG V TD++ P ++ EG + L + + + +G+F + + +
Sbjct: 220 ILLNACCPGWVRTDMAGPKATKSPEEGAE-----TPVYLALLPPDAEGP-HGQFVS-EKR 272
Query: 279 EIPW 282
W
Sbjct: 273 VEQW 276
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 6e-28
Identities = 57/271 (21%), Positives = 112/271 (41%), Gaps = 41/271 (15%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
G V LV G SRGIG L + V R+ L LK ++ +R + D
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARS---EAPLKKLKEKYGDRFFYVVGD 58
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
+T +S ++ + + +G ++ L+ +G+ L+P +N+++ ++ Y++N
Sbjct: 59 ITEDSVLKQLVNAAVKGHGKIDSLVANAGV------LEPVQNVNEIDVNAWKKLYDINFF 112
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
+ ++ P LK + +S+ ++ + W +Y +SKAALN
Sbjct: 113 SIVSLVGIALPELKKTNGNV-------VFVSSDACNMYFS---SWGAYGSSKAALNHFAM 162
Query: 208 SVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL-------FTKEFSVQKLL-- 258
+++ E + V I + PG VDTD+ + NV + F +LL
Sbjct: 163 TLANE----ERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDS 218
Query: 259 ----NIINNIKSHD-----NGKFFAWDGQEI 280
+ + H NG++ +++ +
Sbjct: 219 SVPATVYAKLALHGIPDGVNGQYLSYNDPAL 249
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 9e-27
Identities = 41/221 (18%), Positives = 71/221 (32%), Gaps = 31/221 (14%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
LV G S +G E K K+ I+ N P +
Sbjct: 21 MSKNILVLGGSGALGAEVVKFFKSKSWN--TISIDFREN------------PNADHSFTI 66
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
+ E I++ + I K ++ + A+G S N + L + M+ +N
Sbjct: 67 KDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASS-DEFL---KSVKGMID--MNL 120
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
+ LL GG + A G +Y A+KAA + +
Sbjct: 121 YSAFASAHIGAKLLNQGG--------LFVLTGASAALNRT---SGMIAYGATKAATHHII 169
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL 247
K ++ E G + + P T+DT +R + +
Sbjct: 170 KDLASENGGLPAGSTSLGILPVTLDTPTNRKYMSDANFDDW 210
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-26
Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 29/206 (14%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
LV GAS G G A+ + D VI T R L DL +P+R + + LD+T
Sbjct: 9 LVTGASSGFGRAIAEAAVAAGDT--VIGTARRT---EALDDLVAAYPDRAEAISLDVTDG 63
Query: 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPIL 151
I+ A + +YG +++L+N +G + ETT ++ +E++ GP
Sbjct: 64 ERIDVVAADVLARYGRVDVLVNNAGRTQVGAF--EETTERELRDL-----FELHVFGPAR 116
Query: 152 VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSV 211
+ + + P ++ G+G V N+S+ G + G+ +Y A+KAAL QL++ ++
Sbjct: 117 LTRALLPQMRERGSG------SVVNISSFGGQLS---FAGFSAYSATKAALEQLSEGLAD 167
Query: 212 E---FGRKKDPVICILLHPGTVDTDL 234
E FG K V+ + PG T+L
Sbjct: 168 EVAPFGIK---VLIV--EPGAFRTNL 188
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 8e-26
Identities = 59/293 (20%), Positives = 95/293 (32%), Gaps = 78/293 (26%)
Query: 19 SASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NGATGLLDLKNRF 77
+ K ++V G ++GIG E KQL V+ TCR+ G + LKN
Sbjct: 3 ETCPNTVTKRRCAVVTGGNKGIGFEICKQLSSNGIM--VVLTCRDVTKGHEAVEKLKNSN 60
Query: 78 PERLDVLQLDLT-VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKS 136
E + QLD+T +T+ + A IK +G L++L+N +G+ +
Sbjct: 61 HENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGE 120
Query: 137 SLMLA-----------------------YEVNAVGPILVIKHMSPLLKVGGTGIERDVAV 173
++N G V + + PLL++ +
Sbjct: 121 DSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSP------R 174
Query: 174 VANLSARVGSI------------------------------------GDNRLGGWHS--- 194
+ N+S+ GS+ GW S
Sbjct: 175 IVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGA 234
Query: 195 -YRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-QRNVPEG 245
Y SKA LN T+ K + PG V T+++ EG
Sbjct: 235 AYTTSKACLNAYTR----VLANKIPKFQVNCVCPGLVKTEMNYGIGNYTAEEG 283
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-25
Identities = 52/238 (21%), Positives = 89/238 (37%), Gaps = 39/238 (16%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVL 84
LV G S+GIG + LL+ VI + + E L +
Sbjct: 3 AMANYLVTGGSKGIGKAVVELLLQN---KNHTVINIDIQQSFSA----------ENLKFI 49
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYE 143
+ DLT + I IK S + + +GIL ++ ++ KV +
Sbjct: 50 KADLTKQQDITNVLDIIK--NVSFDGIFLNAGILIKGSIFDIDIESIKKV--------LD 99
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
+N I IK + LKVG + + + I +Y SK A+
Sbjct: 100 LNVWSSIYFIKGLENNLKVGASIV--------FNGSDQCFIAKP---NSFAYTLSKGAIA 148
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261
Q+TKS++++ + + V + PGTVDTDL R + + + + ++
Sbjct: 149 QMTKSLALDLAKYQIRVNTV--CPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEF 204
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 5e-25
Identities = 53/256 (20%), Positives = 98/256 (38%), Gaps = 37/256 (14%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLD-LKNRFPE-RLDV 83
V ++ GASRG G A QL G ++ + R+ + L + L + P+ ++ +
Sbjct: 5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVL 64
Query: 84 LQLDLTVESTIEASAKSIKEKYG----SLNLLINASGILS-IPNVLQPETTLNKVEKSSL 138
DL E+ ++ +++E LLIN + L + L +V
Sbjct: 65 AAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNN--- 121
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
+ +N + + + G+ + V +++L A GW Y A
Sbjct: 122 --YWALNLTSMLCLTSGTLNAFQDSP-GLSKTVVNISSLCALQP------YKGWGLYCAG 172
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-------------FQRNVPEG 245
KAA + L + ++ E + V + PG +D D+ + Q+ +G
Sbjct: 173 KAARDMLYQVLAAE----EPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDG 228
Query: 246 KLFTKEFSVQKLLNII 261
L S QKLL ++
Sbjct: 229 ALVDCGTSAQKLLGLL 244
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 6e-24
Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 24/215 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G V+++ G + GIGL A + +E+ K V+ T R+ + P+++ Q
Sbjct: 5 DGKVAIITGGTLGIGLAIATKFVEEGAK--VMITGRHSDVGEKAAKSVGT-PDQIQFFQH 61
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKSSLMLAYE 143
D + E + ++ +G ++ L+N +GI +V ETT K+
Sbjct: 62 DSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVE--ETTTAEWRKL--------LA 111
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
VN G + +K G G A + N+S+ G +GD +Y ASK A+
Sbjct: 112 VNLDGVFFGTRLGIQRMKNKGLG-----ASIINMSSIEGFVGD---PSLGAYNASKGAVR 163
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
++KS +++ K V +HPG + T L
Sbjct: 164 IMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDL 198
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 2e-23
Identities = 40/221 (18%), Positives = 78/221 (35%), Gaps = 24/221 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G +V GA G+G L+E+ + V R L + + +
Sbjct: 2 SLGHIIVTGAGSGLGRALTIGLVERGHQ--VSMMGRR---YQRLQQQELLLGNAVIGIVA 56
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
DL ++ + + E G L+++ +G V T ++ + ++ E N
Sbjct: 57 DLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVG--VYTAEQIRR---VM--ESNL 109
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
V ILV + L+ G V+AN+ + +G Y ASK +
Sbjct: 110 VSTILVAQQTVRLIGERG-------GVLANVLSSAAQVG---KANESLYCASKWGMRGFL 159
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL 247
+S+ E ++ + +P + ++ P G +
Sbjct: 160 ESLRAELKDSPLRLVNL--YPSGIRSEFWDNTDHVDPSGFM 198
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 3e-23
Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 29/221 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G V+LV G +RG+G + ++ + K V+ + + + L
Sbjct: 6 TGKVALVSGGARGMGASHVRAMVAEGAK--VVFGDILDEEGKAMAA---ELADAARYVHL 60
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKSSLMLAYE 143
D+T + +A+ + +G L++L+N +GIL+I + + L ++ +
Sbjct: 61 DVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIE--DYALTEWQRI--------LD 110
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
VN G L I+ + +K G G +++ N+S+ G G H Y A+K A+
Sbjct: 111 VNLTGVFLGIRAVVKPMKEAGRG-----SII-NISSIEGLAGTV---ACHGYTATKFAVR 161
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
LTKS ++E G V I HPG V T ++ ++ +
Sbjct: 162 GLTKSTALELGPSGIRVNSI--HPGLVKTPMTDWVPEDIFQ 200
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 4e-23
Identities = 50/242 (20%), Positives = 96/242 (39%), Gaps = 46/242 (19%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT-GLLDLKNRFPERLDVLQ 85
+ V +V GAS GIG A++ ++ G+ L + + + D ++
Sbjct: 7 RDKVVIVTGASMGIGRAIAERFVD--------------EGSKVIDLSIHDPGEAKYDHIE 52
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKSSLMLAY 142
D+T ++AS I ++YGS+++L+N +GI S + ++ ++
Sbjct: 53 CDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIE--SMSMGEWRRI--------I 102
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
+VN G K P + ++V N+S+ SI +Y SK A+
Sbjct: 103 DVNLFGYYYASKFAIPYMIRSRDP-----SIV-NISSVQASIIT---KNASAYVTSKHAV 153
Query: 203 NQLTKSVSVEFGRKKDPVI---CILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLN 259
LTKS+++++ + + P T+DT L R E + + +
Sbjct: 154 IGLTKSIALDYAPL----LRCNAV--CPATIDTPLVRKAAELEVGSDPMRIEKKISEWGH 207
Query: 260 II 261
Sbjct: 208 EH 209
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 7e-23
Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 31/225 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G ++ G +RG+G E A+Q + G V+ +
Sbjct: 4 SGKTVIITGGARGLGAEAARQAVAA---GARVVLADVLDEEGAATAR---ELGDAARYQH 57
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKSSLMLAY 142
LD+T+E + +E++GS++ L+N +GI + + ++ KV
Sbjct: 58 LDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLE--TESVERFRKV--------V 107
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
E+N G + +K + P +K G G ++V N+S+ G +G SY ASK +
Sbjct: 108 EINLTGVFIGMKTVIPAMKDAGGG-----SIV-NISSAAGLMGLA---LTSSYGASKWGV 158
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL 247
L+K +VE G + V + HPG T ++ EG
Sbjct: 159 RGLSKLAAVELGTDRIRVNSV--HPGMTYTPMTAETGIRQGEGNY 201
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253 | Back alignment and structure |
|---|
Score = 93.3 bits (233), Expect = 7e-23
Identities = 45/235 (19%), Positives = 100/235 (42%), Gaps = 30/235 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
+G V+LV G + G+GLE K LL + G V + N L ER ++
Sbjct: 5 QGKVALVTGGASGVGLEVVKLLLGE---GAKVAFSDINEAAGQQLAA---ELGERSMFVR 58
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKSSLMLAY 142
D++ E+ +++ + G+LN+L+N +GIL ++ L +++
Sbjct: 59 HDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDME--TGRLEDFSRL--------L 108
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
++N + + +K G G +++ N+++ + + Y ASKAA+
Sbjct: 109 KINTESVFIGCQQGIAAMKETG-G-----SII-NMASVSSWLPI---EQYAGYSASKAAV 158
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKL 257
+ LT++ ++ ++ + +HP + T + + ++ + + +
Sbjct: 159 SALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRA 213
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 2e-22
Identities = 41/231 (17%), Positives = 88/231 (38%), Gaps = 30/231 (12%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-----LLDLKNRFPERLDVL 84
+ L+ GAS G G A+ L + V A+ R+ G + L L
Sbjct: 7 IILITGASSGFGRLTAEALAGAGHR--VYASMRDIVGRNASNVEAIAGFARDNDVDLRTL 64
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
+LD+ + +++ + I + G +++LI+ +G + T + + Y++
Sbjct: 65 ELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPA--EAFTPEQFAE-----LYDI 117
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N + V + P ++ G ++ +S+ + G Y A+KAA++
Sbjct: 118 NVLSTQRVNRAALPHMRRQKHG------LLIWISSSSSAGGTPPYLAP--YFAAKAAMDA 169
Query: 205 LTKSVSVE---FGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEF 252
+ + E +G + ++ PG + + VP+ E+
Sbjct: 170 IAVQYARELSRWG-----IETSIIVPGAFTSGTNHFAHSGVPDDHARQAEY 215
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 2e-22
Identities = 48/241 (19%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
V++V G S GIGL L+ K V++ + D ++
Sbjct: 13 TDKVAIVTGGSSGIGLAVVDALVRYGAK--VVSVSLDEKSDV----------NVSDHFKI 60
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKSSLMLAYE 143
D+T E ++ + + +KYG +++L+N +GI + T ++ +
Sbjct: 61 DVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLH--LTPTEIWRRI--------ID 110
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
VN G L+ K+ P++ G G +++ N+++ +Y SK AL
Sbjct: 111 VNVNGSYLMAKYTIPVMLAIGHG-----SII-NIASVQSYAAT---KNAAAYVTSKHALL 161
Query: 204 QLTKSVSVEFGRKKDPVI---CILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNI 260
LT+SV++++ K I + PGT+ T + + E +++
Sbjct: 162 GLTRSVAIDYAPK----IRCNAV--CPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQ 215
Query: 261 I 261
Sbjct: 216 H 216
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 3e-22
Identities = 49/239 (20%), Positives = 84/239 (35%), Gaps = 33/239 (13%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE-RLDV 83
+ A GIGL+ +++L+++N K T L +LK P+ +
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLK--NFVILDRVENPTALAELKAINPKVNITF 59
Query: 84 LQLDLTVE-STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAY 142
D+TV + + K I ++ ++++LIN +GIL + Q E T+
Sbjct: 60 HTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGIL---DDHQIERTIA----------- 105
Query: 143 EVNAVGPILVIKHMSPLL---KVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASK 199
+N G + + K G G ++AN+ + G Y ASK
Sbjct: 106 -INFTGLVNTTTAILDFWDKRKGGPGG------IIANICSVTGFNAI---HQVPVYSASK 155
Query: 200 AALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLL 258
AA+ T S++ I PG T L F + +
Sbjct: 156 AAVVSFTNSLAKLAPITGVTAYSIN--PGITRTPLVHTFNSWLDVEPRVAELLLSHPTQ 212
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 1e-21
Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 32/239 (13%)
Query: 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD-LKNRFPE 79
+ ++ G V +V G RGIG + + + V+ ++ +G L L
Sbjct: 2 ATGTRYAGKVVVVTGGGRGIGAGIVRAFVNSGAR--VVICDKDESGGRALEQELPGAVFI 59
Query: 80 RLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKS 136
DV T E ++ ++G L+ ++N +G P + ET+ ++
Sbjct: 60 LCDV-----TQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPE-ETSAQGFRQL--- 110
Query: 137 SLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR 196
E+N +G + K P L+ G V+ N+S+ VG+IG Y
Sbjct: 111 -----LELNLLGTYTLTKLALPYLRKSQ-G-----NVI-NISSLVGAIGQ---AQAVPYV 155
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQ 255
A+K A+ +TK+++++ V CI PG + T L +P+ + +E +
Sbjct: 156 ATKGAVTAMTKALALDESPYGVRVNCI--SPGNIWTPLWEELAALMPDPRASIREGMLA 212
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 2e-21
Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 31/223 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G V++V GA GIGL A++L ++ GC V+ + + A + +
Sbjct: 28 AGKVAIVTGAGAGIGLAVARRLADE---GCHVLCADIDGDAADAAAT---KIGCGAAACR 81
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKSSLMLAY 142
+D++ E I A + +G ++ L+ +G++ + +++ +TT+ ++V
Sbjct: 82 VDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLI--DTTVEDFDRV--------I 131
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
+N G L KH +P + G G A+V NLS+ G + GG +Y SKA +
Sbjct: 132 AINLRGAWLCTKHAAPRMIERGGG-----AIV-NLSSLAGQVAV---GGTGAYGMSKAGI 182
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEG 245
QL++ + E + P VDT + +
Sbjct: 183 IQLSRITAAELRSSGIRSNTL--LPAFVDTPMQQTAMAMFDGA 223
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 2e-21
Identities = 50/216 (23%), Positives = 85/216 (39%), Gaps = 29/216 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
+ V+++ GA GIGLE ++ L G V+ G
Sbjct: 10 ENKVAIITGACGGIGLETSRVLARA---GARVVLADLPETDLAGAAA---SVGRGAVHHV 63
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKSSLMLAY 142
+DLT E ++ A + +G L+++ N + ++L + T+ + +
Sbjct: 64 VDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDT--------F 115
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
VNA G +L+ K+ P L G G A+V N+S+ +Y +KAA+
Sbjct: 116 TVNARGTMLMCKYAIPRLISAGGG-----AIV-NISSATAHAAY---DMSTAYACTKAAI 166
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
LT+ V+ ++GR I PG V T
Sbjct: 167 ETLTRYVATQYGRHGVRCNAI--APGLVRTPRLEVG 200
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 2e-21
Identities = 48/222 (21%), Positives = 83/222 (37%), Gaps = 34/222 (15%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G LV G +RGIG A+ + G V P G + F Q
Sbjct: 5 AGKGVLVTGGARGIGRAIAQAFARE---GALVALCDLRPEGKEVAEAIGGAF------FQ 55
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKSSLMLAY 142
+DL E + G +++L+N + I + + L L +V
Sbjct: 56 VDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSAL--TVRLPEWRRV--------L 105
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
EVN P+ + + ++ G G A+V N+++ G + +Y ASK L
Sbjct: 106 EVNLTAPMHLSALAAREMRKVGGG-----AIV-NVASVQGLFAE---QENAAYNASKGGL 156
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
LT+S++++ + V + PG + T+ P+
Sbjct: 157 VNLTRSLALDLAPLRIRVNAV--APGAIATEAVLEAIALSPD 196
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 3e-21
Identities = 52/231 (22%), Positives = 86/231 (37%), Gaps = 32/231 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKG-CVIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G V ++ A++GIG A + G VIAT N + L LDV
Sbjct: 5 DGKVIILTAAAQGIGQAAALAFARE---GAKVIATDINESKLQELEKYPGIQTRVLDV-- 59
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEV 144
T + + L++L N +G + VL E + +
Sbjct: 60 -------TKKKQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFS--------MNL 104
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N L+IK P + +G ++ N+S+ S+ Y +KAA+
Sbjct: 105 NVRSMYLMIKAFLPKMLAQKSG-----NII-NMSSVASSVKGVV--NRCVYSTTKAAVIG 156
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQ 255
LTKSV+ +F ++ C+ PGTVDT + + + +F +
Sbjct: 157 LTKSVAADFIQQGIRCNCV--CPGTVDTPSLQERIQARGNPEEARNDFLKR 205
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 3e-21
Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 25/240 (10%)
Query: 17 TSSASASVKW--KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDL 73
+ + +W KG +LV G S+GIG ++L G + TC RN L++
Sbjct: 8 MMNCNNEGRWSLKGTTALVTGGSKGIGYAIVEELAGL---GARVYTCSRNEKELDECLEI 64
Query: 74 KNRFPERLDVLQLDLTVESTIEASAKSIKEKY-GSLNLLINASGILSIPNVLQPETTLNK 132
++ DL + + +++ + G LN+L+N +G+ + + +
Sbjct: 65 WREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGV----VIHKEAKDFTE 120
Query: 133 VEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGW 192
+ + +M N + + PLLK G V LS+ G L
Sbjct: 121 KDYNIIM---GTNFEAAYHLSQIAYPLLKASQNG------NVIFLSSIAGFSA---LPSV 168
Query: 193 HSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEF 252
Y ASK A+NQ+TKS++ E+ + V + PG + T L + P K F
Sbjct: 169 SLYSASKGAINQMTKSLACEWAKDNIRVNSV--APGVILTPLVETAIKKNPHQKEEIDNF 226
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 5e-21
Identities = 51/233 (21%), Positives = 93/233 (39%), Gaps = 24/233 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLD-LKNRFP-ERLDV 83
V++V G S GIGL + LLE G +A C R+ L+ RFP RL
Sbjct: 7 SEAVAVVTGGSSGIGLATVELLLEA---GAAVAFCARDGERLRAAESALRQRFPGARLFA 63
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYE 143
D+ + A A++ + G ++L+N +G +T + + +
Sbjct: 64 SVCDVLDALQVRAFAEACERTLGCASILVNNAGQ-------GRVSTFAETTDEAWSEELQ 116
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
+ I ++ P L+ A+V +++ + S + + A++A +
Sbjct: 117 LKFFSVIHPVRAFLPQLESRADA-----AIV-CVNSLLASQPE---PHMVATSAARAGVK 167
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQK 256
L +S++ EF K V IL G V++ R E +L +++ Q
Sbjct: 168 NLVRSMAFEFAPKGVRVNGIL--IGLVESGQWRRRFEAREERELDWAQWTAQL 218
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260 | Back alignment and structure |
|---|
Score = 88.3 bits (220), Expect = 5e-21
Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 25/214 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
V++V G ++ IGL L E G VI + AT ++ + +
Sbjct: 12 DNRVAIVTGGAQNIGLACVTALAEA---GARVIIADLDEAMATKAVEDLRMEGHDVSSVV 68
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKSSLMLAY 142
+D+T +++ + +S+ E+ G +++L+ +GI I V + T K
Sbjct: 69 MDVTNTESVQNAVRSVHEQEGRVDILVACAGI-CISEVKAEDMTDGQWLKQ--------V 119
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
++N G + + ++ G V+ + + G I NR +Y ASKA +
Sbjct: 120 DINLNGMFRSCQAVGRIMLEQKQG------VIVAIGSMSGLIV-NRPQQQAAYNASKAGV 172
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
+Q +S++ E+ + P ++T L+R
Sbjct: 173 HQYIRSLAAEWAPHGIRANAV--APTYIETTLTR 204
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 6e-21
Identities = 43/219 (19%), Positives = 95/219 (43%), Gaps = 25/219 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
V +V G GIG A+ + V+ N + A + + + +++
Sbjct: 26 NQRVCIVTGGGSGIGRATAELFAKNGAY--VVVADVNEDAAVRVAN---EIGSKAFGVRV 80
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEVN 145
D++ E+ + K+G +++L+N +G + NV+ PE T +++ VN
Sbjct: 81 DVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRI--------MSVN 132
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G L K++ P+++ G G +++ N ++ + +Y ASK A++ L
Sbjct: 133 VKGIFLCSKYVIPVMRRNGGG-----SII-NTTSYTATSAI---ADRTAYVASKGAISSL 183
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
T++++++ ++ V + PGT+D+ +
Sbjct: 184 TRAMAMDHAKEGIRVNAV--APGTIDSPYFTKIFAEAKD 220
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247 | Back alignment and structure |
|---|
Score = 87.2 bits (217), Expect = 1e-20
Identities = 46/221 (20%), Positives = 80/221 (36%), Gaps = 37/221 (16%)
Query: 27 KGGVSLVQGASRGIG----LEFAKQLLEKNDKGC-VIATCRNPNGATGLLDL---KNRFP 78
KG V LV GA+RGIG +A G V+ R + D +
Sbjct: 13 KGRVILVTGAARGIGAAAARAYAAH-------GASVVLLGRTEASLAEVSDQIKSAGQPQ 65
Query: 79 ERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVL--QPETTLNKVEKS 136
+ L L+ A ++ ++G L+ L++ + I+ L P+ +V
Sbjct: 66 PLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQV--- 122
Query: 137 SLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR 196
VN ++ + + PLLK ++ S+ VG G W +Y
Sbjct: 123 -----MHVNVNATFMLTRALLPLLKRSEDA-----SIA-FTSSSVGRKGR---ANWGAYG 168
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVICI-LLHPGTVDTDLSR 236
SK A L ++++ E + ++PG T +
Sbjct: 169 VSKFATEGLMQTLADELEGVTA--VRANSINPGATRTGMRA 207
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 2e-20
Identities = 42/219 (19%), Positives = 82/219 (37%), Gaps = 27/219 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
++++ GA+ GIGL AK+ + + + V T R L +Q
Sbjct: 28 NAKIAVITGATSGIGLAAAKRFVAEGAR--VFITGRR---KDVLDAAIAEIGGGAVGIQA 82
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEVN 145
D + ++ + +K + G +++L +G S+ + + E + ++ N
Sbjct: 83 DSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDT--------FDRN 134
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G + ++ PLL G +VV + GS G + Y ASKAAL
Sbjct: 135 VKGVLFTVQKALPLLARGS-------SVV-LTGSTAGSTG---TPAFSVYAASKAALRSF 183
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
++ ++ + + + PG +T P
Sbjct: 184 ARNWILDLKDRGIRINTL--SPGPTETTGLVELAGKDPV 220
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 2e-20
Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 24/221 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
+G V+L+ GA G G AK+ + K V+ R+ GA + + +
Sbjct: 8 EGKVALITGAGSGFGEGMAKRFAKGGAK--VVIVDRDKAGAERVAG---EIGDAALAVAA 62
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKSSLMLAYE 143
D++ E+ ++A+ ++ K+G +++L+N +GI +++
Sbjct: 63 DISKEADVDAAVEAALSKFGKVDILVNNAGI-GHKPQNAELVEPEEFDRI--------VG 113
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
VN G L+ + P K G + V + N+++ Y A+K +
Sbjct: 114 VNVRGVYLMTSKLIPHFKENGAKGQECVIL--NVASTGAGRPR---PNLAWYNATKGWVV 168
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
+TK++++E K V+ + +P +T L F E
Sbjct: 169 SVTKALAIELAPAKIRVVAL--NPVAGETPLLTTFMGEDSE 207
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 2e-20
Identities = 49/232 (21%), Positives = 85/232 (36%), Gaps = 39/232 (16%)
Query: 27 KGGVSLVQGASRGIG----LEFAKQLLEKNDKG-CVIATCRNPNGATGLLD-LKNRFPER 80
+ LV GAS GIG + +A+ G VI RN + + +
Sbjct: 11 NDRIILVTGASDGIGREAAMTYARY-------GATVILLGRNEEKLRQVASHINEETGRQ 63
Query: 81 LDVLQLDLTV--ESTIEASAKSIKEKYGSLNLLINASGIL--SIPNVLQPETTLNKVEKS 136
LDL + A+ I Y L+ +++ +G+L P Q V
Sbjct: 64 PQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDV--- 120
Query: 137 SLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR 196
+VN ++ + + PLL G ++V S+ VG G W +Y
Sbjct: 121 -----MQVNVNATFMLTQALLPLLLKSDAG-----SLV-FTSSSVGRQG---RANWGAYA 166
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVICI-LLHPGTVDTDLSRPFQRNVPEGKL 247
ASK A + + ++ E+ ++ + + ++PG T + KL
Sbjct: 167 ASKFATEGMMQVLADEYQQR----LRVNCINPGGTRTAMRASAFPTEDPQKL 214
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 3e-20
Identities = 41/213 (19%), Positives = 84/213 (39%), Gaps = 21/213 (9%)
Query: 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDLKNRFPERLDVL 84
G + L+ GA GIG A + + + N +G ++
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKL---KSKLVLWDINKHGLEETAAKCKGLGAKVHTF 85
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
+D + I +SAK +K + G +++L+N +G++ ++ T ++EK+ +EV
Sbjct: 86 VVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLF--ATQDPQIEKT-----FEV 138
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N + K P + + + + +++ G + L +Y +SK A
Sbjct: 139 NVLAHFWTTKAFLPAM------TKNNHGHIVTVASAAGHVSVPFLL---AYCSSKFAAVG 189
Query: 205 LTKSVSVEF-GRKKDPVICILLHPGTVDTDLSR 236
K+++ E + V L P V+T +
Sbjct: 190 FHKTLTDELAALQITGVKTTCLCPNFVNTGFIK 222
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 3e-20
Identities = 47/232 (20%), Positives = 103/232 (44%), Gaps = 24/232 (10%)
Query: 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL---LDLKNRFPE 79
S++ + G++++ GAS+GIG A L + V+ R+ + + N+ +
Sbjct: 2 SLEKQKGLAIITGASQGIGAVIAAGLATDGYR--VVLIARSKQNLEKVHDEIMRSNKHVQ 59
Query: 80 RLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLM 139
VL LD+T + + K I +KYG++++L+NA+ + ++ +P K+
Sbjct: 60 EPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKI------ 113
Query: 140 LAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASK 199
E+N + ++K ++ ++ + + N+++R G Y ++K
Sbjct: 114 --MEINVIAQYGILKTVTEIM------KVQKNGYIFNVASRAAKYG---FADGGIYGSTK 162
Query: 200 AALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKE 251
AL L +S+ E V + PG V+TD+++ + ++ +
Sbjct: 163 FALLGLAESLYRELAPLGIRVTTL--CPGWVNTDMAKKAGTPFKDEEMIQPD 212
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 7e-20
Identities = 45/212 (21%), Positives = 80/212 (37%), Gaps = 22/212 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLD-LKNRFPERLDVL 84
+G +V GAS+GIG E A L + G V+ T R+ ++ +
Sbjct: 27 QGKKVIVTGASKGIGREMAYHLAKM---GAHVVVTARSKETLQKVVSHCLELGAASAHYI 83
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
+ + E + G L++LI + N+ ++ V K M EV
Sbjct: 84 AGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLF--HDDIHHVRK--SM---EV 136
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N + +++ P+LK + +S+ G + + Y ASK AL+
Sbjct: 137 NFLSYVVLTVAALPMLKQSN-------GSIVVVSSLAGKVAYPMVAA---YSASKFALDG 186
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
S+ E+ + V L G +DT+ +
Sbjct: 187 FFSSIRKEYSVSRVNVSITLCVLGLIDTETAM 218
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 8e-20
Identities = 44/217 (20%), Positives = 80/217 (36%), Gaps = 26/217 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL---LDLKNRFPERLDV 83
+ LV G GIG A L+ V+ RNP+ G L+ +
Sbjct: 10 QDRTYLVTGGGSGIGKGVAAGLVAAGAS--VMIVGRNPDKLAGAVQELEALGANGGAIRY 67
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVL--QPETTLNKVEKSSLMLA 141
D+T E + ++ +G L+ +++ +G + +
Sbjct: 68 EPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRT-------- 119
Query: 142 YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
++N G + V+KH + + GG G + V +S+ S + +Y +K+A
Sbjct: 120 VDLNVNGTMYVLKHAAREMVRGGGG-----SFV-GISSIAASNTH---RWFGAYGVTKSA 170
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
++ L + + E G V I PG + TDL
Sbjct: 171 VDHLMQLAADELGASWVRVNSI--RPGLIRTDLVAAI 205
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 8e-20
Identities = 39/236 (16%), Positives = 87/236 (36%), Gaps = 22/236 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
V ++ G +G A++ E+ G ++ R + R +
Sbjct: 10 TDKVVVISGVGPALGTTLARRCAEQ---GADLVLAARTVERLEDVAKQVTDTGRRALSVG 66
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
D+T ++ + + YG ++++IN + + TT + A E+
Sbjct: 67 TDITDDAQVAHLVDETMKAYGRVDVVINNAFRVP-SMKPFANTTFEHMRD-----AIELT 120
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G + +I+ +P L+ G AVV N+++ V + +Y+ +K+AL +
Sbjct: 121 VFGALRLIQGFTPALEESK-G-----AVV-NVNSMVVRHSQ---AKYGAYKMAKSALLAM 170
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261
+++++ E G K V + PG + + + + + E
Sbjct: 171 SQTLATELGEKGIRVNSV--LPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGS 224
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250 | Back alignment and structure |
|---|
Score = 84.8 bits (211), Expect = 9e-20
Identities = 49/217 (22%), Positives = 98/217 (45%), Gaps = 28/217 (12%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL-DLKNRFPERLDVLQL 86
V++V GAS G GL A + L + D+ V A + + + +++ ++
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDR--VAALDLSAETLEETARTHWHAYADKVLRVRA 59
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQP--ETTL---NKVEKSSLMLA 141
D+ E + A+ + E++G++++L+N +GI + + T + +KV
Sbjct: 60 DVADEGDVNAAIAATMEQFGAIDVLVNNAGI-TGNSEAGVLHTTPVEQFDKV-------- 110
Query: 142 YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
VN G L + + P + + G G +V N+++ + G +Y SK A
Sbjct: 111 MAVNVRGIFLGCRAVLPHMLLQGAG-----VIV-NIASVASLVAF---PGRSAYTTSKGA 161
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
+ QLTKSV+V++ + PG ++T +++
Sbjct: 162 VLQLTKSVAVDYAGSGIRCNAV--CPGMIETPMTQWR 196
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 1e-19
Identities = 48/209 (22%), Positives = 92/209 (44%), Gaps = 27/209 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
+G ++V G + G+GL ++L+E G V+ T RN + + ++ F R+ L+
Sbjct: 7 QGKKAIVIGGTHGMGLATVRRLVEG---GAEVLLTGRN---ESNIARIREEFGPRVHALR 60
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
D+ + I + + G+++LL +G+ + ++V ++S + VN
Sbjct: 61 SDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSEL-------EPFDQVSEASYDRQFAVN 113
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G ++ ++PL++ GG ++V S+ G G Y ASKAAL
Sbjct: 114 TKGAFFTVQRLTPLIREGG-------SIV-FTSSVADEGG---HPGMSVYSASKAALVSF 162
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDL 234
++ E + V + PG +DT
Sbjct: 163 ASVLAAELLPRGIRVNSV--SPGFIDTPT 189
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 2e-19
Identities = 47/233 (20%), Positives = 94/233 (40%), Gaps = 25/233 (10%)
Query: 17 TSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL--K 74
T+++S + ++ V L+ G G+G A +L + K + + G +
Sbjct: 2 TATSSPTTRFTDRVVLITGGGSGLGRATAVRLAAEGAK--LSLVDVSSEGLEASKAAVLE 59
Query: 75 NRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVL--QPETTLNK 132
+ D++ E+ +EA + E++G ++ N +GI N +K
Sbjct: 60 TAPDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDK 119
Query: 133 VEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGW 192
V +N G L ++ + +++ G+G VV N ++ G G +G
Sbjct: 120 V--------VSINLRGVFLGLEKVLKIMREQGSG-----MVV-NTASVGGIRG---IGNQ 162
Query: 193 HSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEG 245
Y A+K + LT++ +VE+GR + I PG + T + + +
Sbjct: 163 SGYAAAKHGVVGLTRNSAVEYGRYGIRINAI--APGAIWTPMVENSMKQLDPE 213
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 2e-19
Identities = 29/225 (12%), Positives = 68/225 (30%), Gaps = 37/225 (16%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G +V G +G + + V+ + N + ++
Sbjct: 2 SSGKVIVYGGKGALGSAILEFFKKNGYT--VLNIDLSANDQ----------ADSNILVDG 49
Query: 87 DLTVESTIEASAKSIKE--KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
+ ++ + + ++ + +G + + + + + M+
Sbjct: 50 NKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASS-KDFVKNADL---MIK--Q 103
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
+ + K + LK GG A + G Y +KAA++
Sbjct: 104 SVWSSAIAAKLATTHLKPGGLLQ--------LTGAAAAMGPTPSMIG---YGMAKAAVHH 152
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSR------PFQRNVP 243
LT S++ + D + + P T+DT ++R P
Sbjct: 153 LTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKWMPNADHSSWTP 197
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 2e-19
Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 18/228 (7%)
Query: 17 TSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR 76
++ S++ + + V+++ G + GIG AK + K V+ + + +
Sbjct: 5 STPDSSTNRLQDKVAIITGGAGGIGETTAKLFVRYGAK--VVIADIADDHGQKVCNNIGS 62
Query: 77 FPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKS 136
V D+T + + + K+G L+++ G+LS E ++
Sbjct: 63 PDVISFV-HCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKR- 120
Query: 137 SLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR 196
+M ++N G LV KH + ++ G ++V ++ G H Y
Sbjct: 121 -VM---DINVYGAFLVAKHAARVMIPAKKG-----SIV-FTASISSFTA--GEGVSHVYT 168
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
A+K A+ LT S+ E G V C+ P V + L
Sbjct: 169 ATKHAVLGLTTSLCTELGEYGIRVNCV--SPYIVASPLLTDVFGVDSS 214
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 2e-19
Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 21/234 (8%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDL---KNRFPERLD 82
V+++ G+S GIG A + G V T R+ + ++
Sbjct: 5 AEKVAIITGSSNGIGRATAVLFARE---GAKVTITGRHAERLEETRQQILAAGVSEQNVN 61
Query: 83 VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAY 142
+ D+T ++ + + K+G L++L+N +G + T S
Sbjct: 62 SVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQ---SKTGTAQSIESYDATL 118
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
+N I + K P L I V N+S+ + + Y +KAA+
Sbjct: 119 NLNLRSVIALTKKAVPHLSSTKGEI------V-NISSIASGLHATP--DFPYYSIAKAAI 169
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQK 256
+Q T++ +++ + V I PG V T K F + K
Sbjct: 170 DQYTRNTAIDLIQHGIRVNSI--SPGLVATGFGSAMGMPEETSKKFYSTMATMK 221
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 2e-19
Identities = 44/218 (20%), Positives = 83/218 (38%), Gaps = 25/218 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
+ V+LV ++ GIGL A++L + G V+ + R + +
Sbjct: 13 ENKVALVTASTDGIGLAIARRLAQD---GAHVVVSSRKQENVDRTVATLQGEGLSVTGTV 69
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVL--QPETTLNKVEKSSLMLAYE 143
+ E +G +++L++ + + + E +K+
Sbjct: 70 CHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKI--------LH 121
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
VN +L+ K + P ++ G G V +S+ LG Y SK AL
Sbjct: 122 VNVKATVLMTKAVVPEMEKRGGG------SVLIVSSVGAYHPFPNLG---PYNVSKTALL 172
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN 241
LTK+++VE + V C+ PG + T+ S+ +
Sbjct: 173 GLTKNLAVELAPRNIRVNCL--APGLIKTNFSQVLWMD 208
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 3e-19
Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 30/209 (14%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDL---KNRFPERLDVLQLD 87
L+ G S GIGL A +L + V AT R+ L + P L+ LQLD
Sbjct: 6 LITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLD 65
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
+ ++ A+ + + E G +++L+ +G+ + L+ + V +VN V
Sbjct: 66 VRDSKSVAAARERVTE--GRVDVLVCNAGL-GLLGPLE-ALGEDAVAS-----VLDVNVV 116
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
G + +++ P +K G+G V + G +G Y ASK AL L +
Sbjct: 117 GTVRMLQAFLPDMKRRGSG------RVLVTGSVGGLMG-LPFNDV--YCASKFALEGLCE 167
Query: 208 SVSVE---FGRKKDPVICILLHPGTVDTD 233
S++V FG V L+ G V T
Sbjct: 168 SLAVLLLPFG-----VHLSLIECGPVHTA 191
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 3e-19
Identities = 52/223 (23%), Positives = 80/223 (35%), Gaps = 22/223 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
+G +++V GAS GIG A + K V+ T RN N L D L
Sbjct: 7 EGKIAIVTGASSGIGRAAALLFAREGAK--VVVTARNGNALAELTDEIAGGGGEAAALAG 64
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVL--QPETTLNKVEKSSLMLAYEV 144
D+ E+ EA + ++G L+ N +G L + + +
Sbjct: 65 DVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRET--------LDT 116
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N L K+ P + G G ++ S+ VG G Y ASKA L
Sbjct: 117 NLTSAFLAAKYQVPAIAALGGG-----SLT-FTSSFVGHTA--GFAGVAPYAASKAGLIG 168
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL 247
L ++++VE G + V + PG DT +
Sbjct: 169 LVQALAVELGARGIRVNAL--LPGGTDTPANFANLPGAAPETR 209
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 3e-19
Identities = 41/233 (17%), Positives = 83/233 (35%), Gaps = 34/233 (14%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G V+L+ G + G+G + + + + V ++ +L+ +
Sbjct: 4 TGEVALITGGASGLGRALVDRFVAEGAR--VAVLDKSAERLR---ELEVAHGGNAVGVVG 58
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYE--- 143
D+ + +A+ +G ++ LI +GI T L + + + A++
Sbjct: 59 DVRSLQDQKRAAERCLAAFGKIDTLIPNAGIW------DYSTALADLPEDKIDAAFDDIF 112
Query: 144 -VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
VN G I +K P L + + G + GG Y A+K A+
Sbjct: 113 HVNVKGYIHAVKACLPALVSSRGSV-------VFTISNAGFYPN---GGGPLYTATKHAV 162
Query: 203 NQLTKSVSVEFGRKKDPVI---CILLHPGTVDTDLSRPFQRNVPEGKLFTKEF 252
L + ++ E + + PG ++TDL P + E + +
Sbjct: 163 VGLVRQMAFELAPH----VRVNGV--APGGMNTDLRGPSSLGLSEQSISSVPL 209
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 3e-19
Identities = 49/225 (21%), Positives = 84/225 (37%), Gaps = 25/225 (11%)
Query: 18 SSASASVKW--KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDLK 74
+ A S +W K LV G ++GIG ++ G VI TC RN L
Sbjct: 2 AGAEQSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGF---GAVIHTCARNEYELNECLSKW 58
Query: 75 NRFPERLDVLQLDLTVESTIEASAKSIKEKYG-SLNLLINASGILSIPNVLQPETTLNKV 133
+ ++ D ++ E +++ +G L++LIN G +P
Sbjct: 59 QKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGA----IRSKPTLDYTAE 114
Query: 134 EKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWH 193
+ S + N + + PLLK G G + +S+ G +
Sbjct: 115 DFSFHI---STNLESAYHLSQLAHPLLKASGCG------NIIFMSSIAGVVS---ASVGS 162
Query: 194 SYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
Y A+K ALNQL ++++ E+ + P + T L+
Sbjct: 163 IYSATKGALNQLARNLACEWASDGIRANAV--APAVIATPLAEAV 205
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 4e-19
Identities = 44/214 (20%), Positives = 80/214 (37%), Gaps = 35/214 (16%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT-GLLDLKNRFPERLDVLQ 85
+G V+LV GA+ GIG L GA + D L
Sbjct: 27 EGKVALVTGAAGGIGGAVVTALRAA--------------GARVAVADRAVAGIAADLHLP 72
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEV 144
DL + + ++ G L++++N +G++S + + + + V
Sbjct: 73 GDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLS--------LGV 124
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N P + + PL+ G G A+V N+++ G G Y +KAAL
Sbjct: 125 NVEAPFRICRAAIPLMAAAGGG-----AIV-NVASCWGLRPG---PGHALYCLTKAALAS 175
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
LT+ + ++ + + + P V+T + R
Sbjct: 176 LTQCMGMDHAPQGIRINAV--CPNEVNTPMLRTG 207
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 6e-19
Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 20/214 (9%)
Query: 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLD 82
S+ + V GA IG E AK+ + V A RN L+ R+
Sbjct: 2 SLTPRNATVAVIGAGDYIGAEIAKKFAAEGFT--VFAGRRNGEKLAPLVAEIEAAGGRIV 59
Query: 83 VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAY 142
LD E + A + + + L + I G +L ETT K +
Sbjct: 60 ARSLDARNEDEVTAFLNAA-DAHAPLEVTIFNVGANVNFPIL--ETTDRVFRK-----VW 111
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
E+ + + + L+ G G + A G G+ ++ ++K L
Sbjct: 112 EMACWAGFVSGRESARLMLAHGQG------KIFFTGATASLRG---GSGFAAFASAKFGL 162
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
+ +S++ E K V +++ VDT R
Sbjct: 163 RAVAQSMARELMPKNIHVAHLII-DSGVDTAWVR 195
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254 | Back alignment and structure |
|---|
Score = 82.5 bits (205), Expect = 6e-19
Identities = 43/221 (19%), Positives = 85/221 (38%), Gaps = 23/221 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
K V +V GA GIG AK+ + V+A + ++ + + ++
Sbjct: 6 KNKVVIVTGAGSGIGRAIAKKFALNDSI--VVAVELLEDRLNQIVQELRGMGKEVLGVKA 63
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVL--QPETTLNKVEKSSLMLAYEV 144
D++ + +E + E Y +++L N +GI+ + + +V V
Sbjct: 64 DVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERV--------LAV 115
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N + + P++ G G +V N ++ G G Y +K L
Sbjct: 116 NLYSAFYSSRAVIPIMLKQGKG-----VIV-NTASIAGIRGG---FAGAPYTVAKHGLIG 166
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEG 245
LT+S++ +G + + + PGTV T++ + G
Sbjct: 167 LTRSIAAHYGDQGIRAVAV--LPGTVKTNIGLGSSKPSELG 205
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255 | Back alignment and structure |
|---|
Score = 82.5 bits (205), Expect = 7e-19
Identities = 47/214 (21%), Positives = 87/214 (40%), Gaps = 25/214 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G +++ GA GIG E A G V+ + N + A ++D + + +
Sbjct: 10 DGKCAIITGAGAGIGKEIAITFATA---GASVVVSDINADAANHVVDEIQQLGGQAFACR 66
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEV 144
D+T E + A A K G +++L+N +G P P + YE+
Sbjct: 67 CDITSEQELSALADFAISKLGKVDILVNNAGG-GGPKPFDMPMADFRRA--------YEL 117
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N + + ++P ++ G G V+ +++ + SY +SKAA +
Sbjct: 118 NVFSFFHLSQLVAPEMEKNGGG------VILTITSMAAENKN---INMTSYASSKAAASH 168
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
L ++++ + G K V I PG + TD +
Sbjct: 169 LVRNMAFDLGEKNIRVNGI--APGAILTDALKSV 200
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 9e-19
Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 31/221 (14%)
Query: 27 KGGVSLVQGASRGIG----LEFAKQLLEKNDKGC-VIATCRNPNGATGLLDL---KNRFP 78
++ G+S GIG + FA++ G V T R+ +
Sbjct: 5 SNKTVIITGSSNGIGRTTAILFAQE-------GANVTITGRSSERLEETRQIILKSGVSE 57
Query: 79 ERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL 138
++++ + D+T E + S +++G +++L+N +G T
Sbjct: 58 KQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKT 117
Query: 139 MLAYEVNAVGPILVIKHMSP-LLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRA 197
+ ++N I + K + P L+ G +V N+S+ V + Y
Sbjct: 118 L---KLNLQAVIEMTKKVKPHLVASKG-------EIV-NVSSIVAGPQAQP--DFLYYAI 164
Query: 198 SKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
+KAAL+Q T+S +++ + V + PG V+T +
Sbjct: 165 AKAALDQYTRSTAIDLAKFGIRVNSV--SPGMVETGFTNAM 203
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 9e-19
Identities = 43/218 (19%), Positives = 81/218 (37%), Gaps = 20/218 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
+++V GA G+G A L V R L + + +
Sbjct: 27 GKKIAIVTGAGSGVGRAVAVALAGAGYG--VALAGRR---LDALQETAAEIGDDALCVPT 81
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T ++ A + EK+G +++L N +G P + + T + ++ ++ N
Sbjct: 82 DVTDPDSVRALFTATVEKFGRVDVLFNNAGT-GAPAIPMEDLTFAQWKQ---VVD--TNL 135
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
GP L + ++K R + N + + Y A+K A+ LT
Sbjct: 136 TGPFLCTQEAFRVMKAQEPRGGRII----NNGSISATSPR---PYSAPYTATKHAITGLT 188
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
KS S++ I G DT +++ + VP+
Sbjct: 189 KSTSLDGRVHDIACGQI--DIGNADTPMAQKMKAGVPQ 224
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 9e-19
Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 34/238 (14%)
Query: 9 RSIRKVAFTSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT 68
R + +W+ ++LV GAS GIG A+ L+++ K V+ R
Sbjct: 13 RENLYFQGHMARPGMERWRDRLALVTGASGGIGAAVARALVQQGLK--VVGCART---VG 67
Query: 69 GLLDLKNRFPE-----RLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNV 123
+ +L L + DL+ E I + +I+ ++ +++ IN +G+
Sbjct: 68 NIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLA----- 122
Query: 124 LQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVA---VVANLSAR 180
TL S + VN + + + +K ER+V ++
Sbjct: 123 --RPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMK------ERNVDDGHIIN----- 169
Query: 181 VGSIGDNR---LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS 235
+ S+ +R L H Y A+K A+ LT+ + E + + + PG V+T +
Sbjct: 170 INSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFA 227
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 1e-18
Identities = 47/224 (20%), Positives = 76/224 (33%), Gaps = 53/224 (23%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRN---------PNGATGLLDLKNR 76
L+ GAS+ +GL A +LLE G VI + R GA
Sbjct: 26 SSAPILITGASQRVGLHCALRLLEH---GHRVIISYRTEHASVTELRQAGAV-------- 74
Query: 77 FPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKS 136
L D + E+ I A +K + SL +++ + + ++
Sbjct: 75 ------ALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRM--- 125
Query: 137 SLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR 196
+ V+ + P L+ H PLL +V ++S V G +Y
Sbjct: 126 -----FSVHMLAPYLINLHCEPLLTASEVA-----DIV-HISDDVTRKG---SSKHIAYC 171
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVI---CILLHPGTVDTDLSRP 237
A+KA L LT S + F P++ I P +
Sbjct: 172 ATKAGLESLTLSFAARFA----PLVKVNGIA--PALLMFQPKDD 209
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 1e-18
Identities = 44/223 (19%), Positives = 73/223 (32%), Gaps = 27/223 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G V LV GA IGL A +L E+ G + N
Sbjct: 6 NGKVCLVTGAGGNIGLATALRLAEE---GTAIALLDMNREALEKAEASVREKGVEARSYV 62
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKSSLMLAY 142
D+T E + + S+ +G ++ L N +G + +V
Sbjct: 63 CDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGY-QGAFAPVQDYPSDDFARV--------L 113
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
+N G V+K +S + G +V N ++ G G +Y SK A+
Sbjct: 114 TINVTGAFHVLKAVSRQMITQNYG-----RIV-NTASMAGVKGP---PNMAAYGTSKGAI 164
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEG 245
LT++ +++ V I PG + Q +
Sbjct: 165 IALTETAALDLAPYNIRVNAI--SPGYMGPGFMWERQVELQAK 205
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 1e-18
Identities = 50/214 (23%), Positives = 90/214 (42%), Gaps = 25/214 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
V++V GA+ GIG A + G V+ T GA + + + L+
Sbjct: 11 NDAVAIVTGAAAGIGRAIAGTFAKA---GASVVVTDLKSEGAEAVAAAIRQAGGKAIGLE 67
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEV 144
++T E EA K+ +++G + +L+N +G P P + +++
Sbjct: 68 CNVTDEQHREAVIKAALDQFGKITVLVNNAGG-GGPKPFDMPMSDFEWA--------FKL 118
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N + + +P ++ G G A++ N+S+ G N SY +SKAA+N
Sbjct: 119 NLFSLFRLSQLAAPHMQKAGGG-----AIL-NISSMAGENT-NV--RMASYGSSKAAVNH 169
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
LT++++ + G V I PG + TD
Sbjct: 170 LTRNIAFDVGPMGIRVNAI--APGAIKTDALATV 201
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 2e-18
Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 23/217 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDLKNRFPERLDVLQ 85
+G +LV G SRGIG ++L G + TC RN L +++
Sbjct: 8 EGCTALVTGGSRGIGYGIVEELASL---GASVYTCSRNQKELNDCLTQWRSKGFKVEASV 64
Query: 86 LDLTVESTIEASAKSIKEKY-GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
DL+ S + ++ + G LN+L+N +GI + + + S +M +
Sbjct: 65 CDLSSRSERQELMNTVANHFHGKLNILVNNAGI----VIYKEAKDYTVEDYSLIM---SI 117
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N + P LK G V +S+ G++ Y A+K A++Q
Sbjct: 118 NFEAAYHLSVLAHPFLKASERG------NVVFISSVSGALAVPYEA---VYGATKGAMDQ 168
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN 241
LT+ ++ E+ + V + PG + T L ++
Sbjct: 169 LTRCLAFEWAKDNIRVNGVG--PGVIATSLVEMTIQD 203
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 2e-18
Identities = 45/220 (20%), Positives = 83/220 (37%), Gaps = 20/220 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVL 84
+G ++LV G G+G A+ L + G VI R ++ R + +
Sbjct: 32 EGRIALVTGGGTGVGRGIAQALSAE---GYSVVITGRRPDVLDAAAGEIGGRTGNIVRAV 88
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
D+ + A +++ ++ L+LL+N +G ++P V E T + ++A
Sbjct: 89 VCDVGDPDQVAALFAAVRAEFARLDLLVNNAGS-NVPPVPLEEVTFEQWNG---IVA--A 142
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N G L +H ++K R + N + Y A+K A+
Sbjct: 143 NLTGAFLCTQHAFRMMKAQTPRGGRII----NNGSISAQTPR---PNSAPYTATKHAITG 195
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
LTKS +++ I G TD++ V +
Sbjct: 196 LTKSTALDGRMHDIACGQI--DIGNAATDMTARMSTGVLQ 233
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 2e-18
Identities = 45/218 (20%), Positives = 81/218 (37%), Gaps = 29/218 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G +L+ GAS GIG + A E G V R+ + + D + ++
Sbjct: 31 SGKRALITGASTGIGKKVALAYAEA---GAQVAVAARHSDALQVVADEIAGVGGKALPIR 87
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGI-LSIPNVLQPETTLNKVEKSSLMLAYEV 144
D+T + + + G +++ + +GI + P ++ +
Sbjct: 88 CDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRI--------QDT 139
Query: 145 NAVGPIL----VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKA 200
N G L + M + G G ++ ++ G I N Y SKA
Sbjct: 140 NVTGVFLTAQAAARAM---VDQGLGG-----TII-TTASMSGHII-NIPQQVSHYCTSKA 189
Query: 201 ALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
A+ LTK+++VE + V + PG + T+L P
Sbjct: 190 AVVHLTKAMAVELAPHQIRVNSVS--PGYIRTELVEPL 225
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 2e-18
Identities = 43/215 (20%), Positives = 83/215 (38%), Gaps = 25/215 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
KG V+ V G+S GIG A+ + G V + L+ + +
Sbjct: 33 KGKVASVTGSSGGIGWAVAEAYAQA---GADVAIWYNSHPADEKAEHLQKTYGVHSKAYK 89
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
+++ ++E + ++ +G++++ + +G+ + K ++ V+
Sbjct: 90 CNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNK--II---SVD 144
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G ++ + K G G + S+ G I N Y +KAA L
Sbjct: 145 LNGVYYCSHNIGKIFKKNGKG------SLIITSSISGKIV-NIPQLQAPYNTAKAACTHL 197
Query: 206 TKSVSVE---FGRKKDPVICILLHPGTVDTDLSRP 237
KS+++E F R V I PG +DTD++
Sbjct: 198 AKSLAIEWAPFAR----VNTIS--PGYIDTDITDF 226
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 3e-18
Identities = 46/219 (21%), Positives = 86/219 (39%), Gaps = 33/219 (15%)
Query: 27 KGGVSLVQGASRGIG----LEFAKQLLEKNDKGC-VIATCRNPNGATGLLDL---KNRFP 78
G ++ G+S GIG + FAK+ G V T RN +
Sbjct: 25 SGKSVIITGSSNGIGRSAAVIFAKE-------GAQVTITGRNEDRLEETKQQILKAGVPA 77
Query: 79 ERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL 138
E+++ + D+T S + + K+G +++L+N +G + + +K
Sbjct: 78 EKINAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQK--T 135
Query: 139 MLAYEVNAVGPILVIKHMSP-LLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRA 197
++N I + + L+K G +V N+S+ V + G+ Y
Sbjct: 136 F---KLNFQAVIEMTQKTKEHLIKTKG-------EIV-NVSSIVAGPQAHS--GYPYYAC 182
Query: 198 SKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
+KAAL+Q T+ +++ + V + PG V T
Sbjct: 183 AKAALDQYTRCTAIDLIQHGVRVNSV--SPGAVATGFMG 219
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 4e-18
Identities = 45/220 (20%), Positives = 73/220 (33%), Gaps = 28/220 (12%)
Query: 27 KGGVSLVQGASRGIG----LEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPER 80
KG L+ G+S+GIG FA+ G + + P +
Sbjct: 6 KGKRVLITGSSQGIGLATARLFARA-------GAKVGLHGRKAPANIDETIASMRADGGD 58
Query: 81 LDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ--PETTLNKVEKSSL 138
DL + K+G +++LIN +G L L +T + V
Sbjct: 59 AAFFAADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAV----- 113
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
+ N ++ K P L + AV+ + + G G G Y A+
Sbjct: 114 ---MDANIRSVVMTTKFALPHLAAAAKASGQTSAVI-STGSIAGHTGGG--PGAGLYGAA 167
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
KA L+ + K+ + + PGTVDT
Sbjct: 168 KAFLHNVHKNWVDFHTKDGVRFNIV--SPGTVDTAFHADK 205
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 5e-18
Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 29/224 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL--KNRFPERLDVL 84
G V+LV GA++GIG FA+ LL K K V N + P++ +
Sbjct: 6 NGKVALVTGAAQGIGRAFAEALLLKGAK--VALVDWNLEAGVQCKAALHEQFEPQKTLFI 63
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
Q D+ + + + + + + +G L++L+N +G+ E K ++
Sbjct: 64 QCDVADQQQLRDTFRKVVDHFGRLDILVNNAGV-------NNEKNWEKT--------LQI 108
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N V I + G ++ N+S+ G + Y ASK +
Sbjct: 109 NLVSVISGTYLGLDYMSKQNGG--EGGIII-NMSSLAGLMPV---AQQPVYCASKHGIVG 162
Query: 205 LTKSVSV--EFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGK 246
T+S ++ + I PG V+T + ++ G+
Sbjct: 163 FTRSAALAANLMNSGVRLNAI--CPGFVNTAILESIEKEENMGQ 204
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 6e-18
Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 30/221 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVL 84
G +L+ GA++GIG + A+ G V++ L +F + +
Sbjct: 19 DGKRALITGATKGIGADIARAFAAA---GARLVLSGRDVSELDAARRALGEQFGTDVHTV 75
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKSSLMLA 141
+DL A+ E +G L++L+N +GI +T +
Sbjct: 76 AIDLAEPDAPAELARRAAEAFGGLDVLVNNAGI--SHPQPVVDTDPQLFDAT-------- 125
Query: 142 YEVNAVGPILVIKHMSP-LLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKA 200
VN P L+ + ++ G G A++ +++ +Y SKA
Sbjct: 126 IAVNLRAPALLASAVGKAMVAAGEGG-----AII-TVASAAALAPLPDHY---AYCTSKA 176
Query: 201 ALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN 241
L TK ++ E G + P V T++ + +
Sbjct: 177 GLVMATKVLARELGPHGIRANSV--CPTVVLTEMGQRVWGD 215
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 8e-18
Identities = 42/234 (17%), Positives = 95/234 (40%), Gaps = 23/234 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLD-LKNRFPERLDVL 84
G V+++ G+S GIGL A+ + +G ++ R + LK +F R+ +
Sbjct: 6 SGKVAVITGSSSGIGLAIAEGFAK---EGAHIVLVARQVDRLHEAARSLKEKFGVRVLEV 62
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
+D+ ++A +S++ +G ++L+N +G T+ + +E+
Sbjct: 63 AVDVATPEGVDAVVESVRSSFGGADILVNNAGT-------GSNETIMEAADEKWQFYWEL 115
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
+ + + + + P ++ G G + + ++ L Y +KAAL
Sbjct: 116 LVMAAVRLARGLVPGMRARGGG------AIIHNASICAVQP---LWYEPIYNVTKAALMM 166
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLL 258
+K+++ E + V CI PG + T + + + + +Q +
Sbjct: 167 FSKTLATEVIKDNIRVNCIN--PGLILTPDWIKTAKELTKDNGGDWKGYLQSVA 218
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 8e-18
Identities = 50/219 (22%), Positives = 89/219 (40%), Gaps = 25/219 (11%)
Query: 18 SSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKN 75
+ S+ V++V GASRGIG A +L G VI A +
Sbjct: 17 NLYFQSMMETNKVAIVTGASRGIGAAIAARLAS---DGFTVVINYAGKAAAAEEVAGKIE 73
Query: 76 RFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEK 135
+ Q D++ + + + +E +G +++L+N +GI+ + + ET ++
Sbjct: 74 AAGGKALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIA--ETGDAVFDR 131
Query: 136 SSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSY 195
++A VN G ++ + L+VGG I N+S + + Y
Sbjct: 132 ---VIA--VNLKGTFNTLREAAQRLRVGGRII--------NMSTSQVGLL---HPSYGIY 175
Query: 196 RASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
A+KA + +T +S E + V + PG TDL
Sbjct: 176 AAAKAGVEAMTHVLSKELRGRDITVNAV--APGPTATDL 212
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 1e-17
Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 24/220 (10%)
Query: 17 TSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLK 74
+ + AS G V+L GA RGIG A +L +G V+ + A ++
Sbjct: 10 SGPSDASKPLAGKVALTTGAGRGIGRGIAIELGR---RGASVVVNYGSSSKAAEEVVAEL 66
Query: 75 NRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVE 134
+ + +Q D++ S + A +G L+ +++ SG+ + L E T +
Sbjct: 67 KKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDEL--EVTQELFD 124
Query: 135 KSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHS 194
K + +N G V + + GG I S+ +
Sbjct: 125 K---VFN--LNTRGQFFVAQQGLKHCRRGGRII--------LTSSIAAVMTGI--PNHAL 169
Query: 195 YRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
Y SKAA+ ++ +V+ G K V CI PG V TD+
Sbjct: 170 YAGSKAAVEGFCRAFAVDCGAKGVTVNCI--APGGVKTDM 207
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 1e-17
Identities = 52/248 (20%), Positives = 102/248 (41%), Gaps = 28/248 (11%)
Query: 19 SASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLD-LKN 75
+ ++ + +++ G +R IG A +L + +G V+ + A L+ L
Sbjct: 2 NETSHEASECPAAVITGGARRIGHSIAVRLHQ---QGFRVVVHYRHSEGAAQRLVAELNA 58
Query: 76 RFPERLDVLQLDLTVESTIEASAKSI----KEKYGSLNLLINASGILSIPNVLQPETTLN 131
+ + DL++ S++ + I +G ++L+N + P L P N
Sbjct: 59 ARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAY-YPTPLLPGDDTN 117
Query: 132 KVEKSSLMLA-----YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186
+ + A + NAV P+ +I+ + GG R+++VV NL + +
Sbjct: 118 GAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVV-NLCDAMTDLP- 175
Query: 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------FQR 240
L G+ Y +K AL LT++ ++E + V + PG + P ++R
Sbjct: 176 --LPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAV--APGLSLLPPAMPQETQEEYRR 231
Query: 241 NVPEGKLF 248
VP G+
Sbjct: 232 KVPLGQSE 239
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 1e-17
Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 33/238 (13%)
Query: 27 KGGVSLVQGASRGIG----LEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERL 81
V+L+ GA GIG L A G V A R + D +
Sbjct: 27 PSPVALITGAGSGIGRATALALAAD-------GVTVGALGRTRTEVEEVADEIVGAGGQA 79
Query: 82 DVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKSSL 138
L+ D++ E + + + + K+G L++++ +GI + ++
Sbjct: 80 IALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGING-VWAPIDDLKPFEWDET----- 133
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
VN G L + P LK G G A+V +S+ G G +Y A+
Sbjct: 134 ---IAVNLRGTFLTLHLTVPYLKQRGGG-----AIV-VVSSING-TRTFTTPGATAYTAT 183
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQK 256
KAA + + +++E G+ V + PG ++T++S + E E+ +
Sbjct: 184 KAAQVAIVQQLALELGKHHIRVNAV--CPGAIETNISDNTKLRHEEETAIPVEWPKGQ 239
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 2e-17
Identities = 43/213 (20%), Positives = 80/213 (37%), Gaps = 38/213 (17%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
K +++V GA+ G+G+E K L V A RNP L ++ E ++ ++
Sbjct: 4 KKKIAVVTGATGGMGIEIVKDLSR---DHIVYALGRNPEHLAALAEI-----EGVEPIES 55
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL-----MLA 141
D+ E E +K ++ L++A+ + +E S+
Sbjct: 56 DIVKEVLEEGGVDKLKN-LDHVDTLVHAAAV----------ARDTTIEAGSVAEWHAH-- 102
Query: 142 YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
++N + P + + + P L+ V +++ G+ G Y ASK A
Sbjct: 103 LDLNVIVPAELSRQLLPALRAAS-------GCVIYINSGAGNGPH---PGNTIYAASKHA 152
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
L L + E V + PG +T +
Sbjct: 153 LRGLADAFRKEEANNGIRVSTV--SPGPTNTPM 183
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 2e-17
Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 37/207 (17%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV 90
L+ GA+ G+G FA+ L KG ++ + R A L +L R L DL
Sbjct: 4 LITGATGGLGGAFARAL-----KGHDLLLSGRR---AGALAELAREVGAR--ALPADLAD 53
Query: 91 ESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPI 150
E +A E+ G L+LL++A G + ++ E + VE+ ML + +
Sbjct: 54 ELEAKALL----EEAGPLDLLVHAVGK-AGRASVR-EAGRDLVEE---ML--AAHLLTAA 102
Query: 151 LVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVS 210
V+KH + A A + + G+ +Y A+K AL ++
Sbjct: 103 FVLKHA----------RFQKGARAVFFGAYPRYVQ---VPGFAAYAAAKGALEAYLEAAR 149
Query: 211 VEFGRKKDPVICILLHPGTVDTDLSRP 237
E R + V +L+ V T L P
Sbjct: 150 KELLR--EGVHLVLVRLPAVATGLWAP 174
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 3e-17
Identities = 45/219 (20%), Positives = 81/219 (36%), Gaps = 29/219 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLD--- 82
G + GASRGIG A + + G ++ + LL E ++
Sbjct: 44 AGCTVFITGASRGIGKAIALKAAKD---GANIVIAAKTAQPHPKLLGTIYTAAEEIEAVG 100
Query: 83 ----VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL 138
+D+ E I A+ + +K+G +++L+N + +S+ N L +T +++
Sbjct: 101 GKALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTL--DTPTKRLD---- 154
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
L VN G L K P LK + N+S + +Y +
Sbjct: 155 -LMMNVNTRGTYLASKACIPYLKKSKVA------HILNISPPLNLNP-VWFKQHCAYTIA 206
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGT-VDTDLSR 236
K ++ ++ EF K + L P T + T
Sbjct: 207 KYGMSMYVLGMAEEF---KGEIAVNALWPKTAIHTAAMD 242
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 4e-17
Identities = 31/221 (14%), Positives = 64/221 (28%), Gaps = 27/221 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
+ LV G +G + +N V + N + +
Sbjct: 6 EARRVLVYGGRGALGSRCVQAFRARNWW--VASIDVVENEEASA-------SVIVKMTDS 56
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
+ A + ++ ++ +G + N ++ + LM +
Sbjct: 57 FTEQADQVTAEVGKL-LGDQKVDAILCVAGGWAGGNAKS-KSLF---KNCDLMWK--QSI 109
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
+ + LK GG A+ G G Y +K A++QL
Sbjct: 110 WTSTISSHLATKHLKEGGLLT--------LAGAKAALDGT---PGMIGYGMAKGAVHQLC 158
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL 247
+S++ + I + P T+DT ++R
Sbjct: 159 QSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSMPEADFSSW 199
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 4e-17
Identities = 43/230 (18%), Positives = 82/230 (35%), Gaps = 29/230 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLD--- 82
G + GASRGIGL A + G V ++ L + ++
Sbjct: 5 SGKTLFITGASRGIGLAIALRAARD---GANVAIAAKSAVANPKLPGTIHSAAAAVNAAG 61
Query: 83 ----VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL 138
L+ D+ E + A+ + + +G +++L+N + + + L +T + + + L
Sbjct: 62 GQGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTL--DTPMKRFD---L 116
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
M VNA G + + P L + L+ G Y +
Sbjct: 117 MQQ--VNARGSFVCAQACLPHLLQAPNP------HILTLAPPPSLNP-AWWGAHTGYTLA 167
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGT-VDTDLSRPFQRNVPEGKL 247
K ++ +T ++ EFG + + + P T + TD V
Sbjct: 168 KMGMSLVTLGLAAEFGPQGVAINAL--WPRTVIATDAINMLP-GVDAAAC 214
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 4e-17
Identities = 48/242 (19%), Positives = 89/242 (36%), Gaps = 36/242 (14%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G ++V G S+GIG A+ L + G V + A + ++
Sbjct: 11 SGRKAIVTGGSKGIGAAIARALDKA---GATVAIADLDVMAAQ---AVVAGLENGGFAVE 64
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
+D+T ++++A+ + + G +LL +G+ + ++VN
Sbjct: 65 VDVTKRASVDAAMQKAIDALGGFDLLCANAGVS-------TMRPAVDITDEEWDFNFDVN 117
Query: 146 AVGPIL----VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
A G L +H L G V+ N ++ +G L Y ASK A
Sbjct: 118 ARGVFLANQIACRHF---LASNTKG------VIVNTASLAAKVGAPLLA---HYSASKFA 165
Query: 202 LNQLTKSVSVEFGRKKDPV--ICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLN 259
+ T++++ E K V +C PG V T + E + T E + ++
Sbjct: 166 VFGWTQALAREMAPKNIRVNCVC----PGFVKTAMQEREIIWEAELRGMTPEAVRAEYVS 221
Query: 260 II 261
+
Sbjct: 222 LT 223
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 5e-17
Identities = 43/223 (19%), Positives = 78/223 (34%), Gaps = 24/223 (10%)
Query: 14 VAFTSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT--CRNPNGATGLL 71
V S + G V+LV G+ RGIG A L G + + A ++
Sbjct: 4 VENASETYIPGRLDGKVALVTGSGRGIGAAVAVHLGRL---GAKVVVNYANSTKDAEKVV 60
Query: 72 DLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLN 131
++ D+ I +G L++ ++ SG++S ++ + T
Sbjct: 61 SEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLK--DVTEE 118
Query: 132 KVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGG 191
+ ++ + + +N G V + L GG + S+
Sbjct: 119 EFDR---VFS--LNTRGQFFVAREAYRHLTEGGRIV--------LTSSNTSKDFSV--PK 163
Query: 192 WHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
Y SK A++ + S + G KK V + PG TD+
Sbjct: 164 HSLYSGSKGAVDSFVRIFSKDCGDKKITVNAV--APGGTVTDM 204
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 7e-17
Identities = 48/235 (20%), Positives = 96/235 (40%), Gaps = 24/235 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLD-LKNRFPERLDV 83
+++ G++ GIGL A+ L + G V+ P+ + D + +
Sbjct: 24 MTKTAVITGSTSGIGLAIARTLAK---AGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLH 80
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYE 143
D+T S I + +++G ++L+N +G+ + + VE+ ++A
Sbjct: 81 HPADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIED-----FPVEQWDRIIA-- 133
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
VN I+ P +K G G ++ N+++ G + +Y A+K +
Sbjct: 134 VNLSSSFHTIRGAIPPMKKKGWG-----RII-NIASAHGLVAS---PFKSAYVAAKHGIM 184
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLL 258
LTK+V++E V I PG V T L + + T+E + +++
Sbjct: 185 GLTKTVALEVAESGVTVNSI--CPGYVLTPLVEKQIPDQARTRGITEEQVINEVM 237
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 8e-17
Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 23/215 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G V +V GASRGIG A QL + G V T R+ + + + +
Sbjct: 4 NGQVCVVTGASRGIGRGIALQLCKA---GATVYITGRHLDTLRVVAQEAQSLGGQCVPVV 60
Query: 86 LDLTVESTIEASAKSI-KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
D + ES + + + + +E+ G L++L+N + T ++ + ++
Sbjct: 61 CDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQT---ILNTRNKAFWETPASMWDDI 117
Query: 145 NAV---GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
N V G + + L+ G G ++ +S S G + Y KAA
Sbjct: 118 NNVGLRGHYFCSVYGARLMVPAGQG------LIVVIS----SPGSLQYMFNVPYGVGKAA 167
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
++L + E R + + PG V T+L +
Sbjct: 168 CDKLAADCAHELRRHGVSCVSLW--PGIVQTELLK 200
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 8e-17
Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 30/216 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVL 84
V LV G SRGIG + +G + N A ++ +
Sbjct: 25 DTPVVLVTGGSRGIGAAVCRLAAR---QGWRVGVNYAANREAADAVVAAITESGGEAVAI 81
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ--PETTLNKVEKSSLMLAY 142
D+ + I A ++ ++G L+ L+N +GI+ P + + ++
Sbjct: 82 PGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERM--------L 133
Query: 143 EVNAVGPIL----VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
VN G IL ++ MS L G I N+S+ +G + Y AS
Sbjct: 134 RVNVTGSILCAAEAVRRMSRLYSGQGGAI-------VNVSSMAAILG--SATQYVDYAAS 184
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
KAA++ T ++ E + V + PG ++TDL
Sbjct: 185 KAAIDTFTIGLAREVAAEGIRVNAV--RPGIIETDL 218
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 1e-16
Identities = 45/217 (20%), Positives = 89/217 (41%), Gaps = 24/217 (11%)
Query: 20 ASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRF 77
S +G V+LV GA RGIG E A +L + GC ++ + A ++ +
Sbjct: 21 GPQSASLEGKVALVTGAGRGIGREMAMELGRR---GCKVIVNYANSTESAEEVVAAIKKN 77
Query: 78 PERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSS 137
++ ++ V I + + +G L+++ + SG++S +V + T + ++
Sbjct: 78 GSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVK--DVTPEEFDR-- 133
Query: 138 LMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRA 197
+ +N G V + L++GG I + + G Y
Sbjct: 134 -VFT--INTRGQFFVAREAYKHLEIGGRLI--------LMGSITGQAKAV--PKHAVYSG 180
Query: 198 SKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
SK A+ + ++++ KK V + PG + TD+
Sbjct: 181 SKGAIETFARCMAIDMADKKITVNVV--APGGIKTDM 215
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 1e-16
Identities = 36/219 (16%), Positives = 79/219 (36%), Gaps = 21/219 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G ++V G + GIGL A + +G ++ + + ++ +
Sbjct: 30 DGRAAVVTGGASGIGLATATEFAR---RGARLVLSDVDQPALEQAVNGLRGQGFDAHGVV 86
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
D+ + A G ++++ + +GI+ + + + +++
Sbjct: 87 CDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLA--QMNHDDWRW-----VIDID 139
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G I ++ P L GTG +A ++ G + + LG +Y +K + L
Sbjct: 140 LWGSIHAVEAFLPRLLEQGTG-----GHIAFTASFAGLVPNAGLG---TYGVAKYGVVGL 191
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
++++ E V L P V+T L +R
Sbjct: 192 AETLAREVKPNGIGVSV--LCPMVVETKLVSNSERIRGA 228
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 2e-16
Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 47/206 (22%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
L+ GAS +G ++L +K + VI R+ + +D+T
Sbjct: 7 LLIGASGTLGSAVKERLEKKAE---VITAGRHS-----------------GDVTVDITNI 46
Query: 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPIL 151
+I+ E+ G ++ +++A+G + + L ++ + G I
Sbjct: 47 DSIKKMY----EQVGKVDAIVSATGSATF-------SPLTELTPEKNAVTISSKLGGQIN 95
Query: 152 VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSV 211
++ L G+ + + + S + A+ KS ++
Sbjct: 96 LVLLGIDSLNDKGSFT--------LTTGIMMEDP---IVQGASAAMANGAVTAFAKSAAI 144
Query: 212 EFGRKKDPVICI-LLHPGTVDTDLSR 236
E R I I + P ++ +
Sbjct: 145 EMPRG----IRINTVSPNVLEESWDK 166
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 2e-16
Identities = 44/238 (18%), Positives = 100/238 (42%), Gaps = 28/238 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDLKNRFPERLDVLQ 85
+G +L+ G++RGIG FA+ + + G +A + A +Q
Sbjct: 7 EGKSALITGSARGIGRAFAEAYVRE---GATVAIADIDIERARQAAA---EIGPAAYAVQ 60
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEV 144
+D+T + +I+A+ + E G L++L+N + + + +++ + K+ + +
Sbjct: 61 MDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKL--------FAI 112
Query: 145 NAVGPILVIKHMSP-LLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
N G + ++ + ++ G G + N++++ G G+ Y A+KAA+
Sbjct: 113 NVAGTLFTLQAAARQMIAQGRGG------KIINMASQAGRRGE---ALVAIYCATKAAVI 163
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261
LT+S ++ + + V I PG VD + + + + + +
Sbjct: 164 SLTQSAGLDLIKHRINVNAI--APGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAV 219
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-16
Identities = 41/238 (17%), Positives = 72/238 (30%), Gaps = 57/238 (23%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
+ ++ G + GIG K L + ++ D+ T
Sbjct: 3 IIVISGCATGIGAATRKVLEAAGHQ--IVGIDIRDAEVIA------------DLS----T 44
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
E +A A + + ++ L+ +G+ VL VN G
Sbjct: 45 AEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLG--------------NVVSVNYFGA 90
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVA---------------------NLSARVGSIGDNR 188
++ P LK G ++ VA A V G+
Sbjct: 91 TELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQ- 149
Query: 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGK 246
GG +Y SK AL + + +G + I PG +T L + ++ G+
Sbjct: 150 -GGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTI--APGATETPLLQAGLQDPRYGE 204
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 2e-16
Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 22/209 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVL 84
+G +V G ++GIG A G +A + + DL ++ +
Sbjct: 9 QGRSVVVTGGTKGIGRGIATVFARA---GANVAVAGRSTADIDACVADLDQLGSGKVIGV 65
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
Q D++ + +A A E++G ++++ +G+ P+ L + L + V
Sbjct: 66 QTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVF-------PDAPLATMTPEQLNGIFAV 118
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N G ++ L G+G V S+ G I GW Y A+KAA
Sbjct: 119 NVNGTFYAVQACLDALIASGSG------RVVLTSSITGPITGYP--GWSHYGATKAAQLG 170
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTD 233
++ ++E K V I+ PG + T+
Sbjct: 171 FMRTAAIELAPHKITVNAIM--PGNIMTE 197
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-16
Identities = 47/236 (19%), Positives = 92/236 (38%), Gaps = 21/236 (8%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
V++V G ++GIG +++L V + A + L ++ + LD
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLD 61
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEVNA 146
+T ++ +++ EK G ++L+N +GI I +L+ E L ++ Y VN
Sbjct: 62 VTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQI--------YSVNV 113
Query: 147 VGPILVIKHMSP-LLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
I+ S ++G G + N ++ G L +Y +K A+ L
Sbjct: 114 FSVFFGIQAASRKFDELGVKG------KIINAASIAAIQGFPILS---AYSTTKFAVRGL 164
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261
T++ + E K V PG V T + + + + ++ + I
Sbjct: 165 TQAAAQELAPKGHTVNAY--APGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSI 218
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-16
Identities = 42/218 (19%), Positives = 76/218 (34%), Gaps = 27/218 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC--RNPNGATGLLDLKNRFPERLDVL 84
+V G +RGIGL F + + G +A + + F +
Sbjct: 13 VNKTIIVTGGNRGIGLAFTRAVAA---AGANVAVIYRSAADAVEVTEKVGKEFGVKTKAY 69
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGI-LSIPNVLQPETTLNKVEKSSLMLAYE 143
Q D++ + + + I G ++ LI +G+ + P V Y+
Sbjct: 70 QCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFV--------YD 121
Query: 144 VNAVGPILVIKHMS-PLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWH----SYRAS 198
VN G + ++ L+ G + S+ I + Y +S
Sbjct: 122 VNVFGVFNTCRAVAKLWLQKQQKG------SIVVTSSMSSQIINQSSLNGSLTQVFYNSS 175
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
KAA + L K ++ E+ V + PG V+TD +
Sbjct: 176 KAACSNLVKGLAAEWASAGIRVNAL--SPGYVNTDQTA 211
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-16
Identities = 33/215 (15%), Positives = 70/215 (32%), Gaps = 28/215 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLD--- 82
+G + G SRGIGL AK++ G V ++ L + ++
Sbjct: 8 RGKTMFISGGSRGIGLAIAKRVAAD---GANVALVAKSAEPHPKLPGTIYTAAKEIEEAG 64
Query: 83 ----VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL 138
+ D+ + A+ E++G +++ +N + +++ ++ E L + + L
Sbjct: 65 GQALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIE--EVPLKRFD---L 119
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
M + G V + P +K + LS + Y +
Sbjct: 120 MNG--IQVRGTYAVSQSCIPHMKGRDNP------HILTLSPPIRLEPKWL--RPTPYMMA 169
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
K + ++ E + P T
Sbjct: 170 KYGMTLCALGIAEELRDAGIASNTL--WPRTTVAT 202
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 3e-16
Identities = 45/217 (20%), Positives = 92/217 (42%), Gaps = 38/217 (17%)
Query: 27 KGGVSLVQGASRGIG----LEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPER 80
+G V ++ G+S G+G + FA + V+ + A +L+ +
Sbjct: 6 EGKVVVITGSSTGLGKSMAIRFATE-------KAKVVVNYRSKEDEANSVLEEIKKVGGE 58
Query: 81 LDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML 140
++ D+TVES + +S +++G L+++IN +G+ + + +++ S
Sbjct: 59 AIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGL-------ENPVSSHEMSLSDWNK 111
Query: 141 AYEVNAVGPIL----VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR 196
+ N G L IK+ ++ G V N+S+ I + Y
Sbjct: 112 VIDTNLTGAFLGSREAIKYF---VENDIKG------TVINMSSVHEKIPW---PLFVHYA 159
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
ASK + +T+++++E+ K V I PG ++T
Sbjct: 160 ASKGGMKLMTETLALEYAPKGIRVNNI--GPGAINTP 194
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 3e-16
Identities = 50/211 (23%), Positives = 84/211 (39%), Gaps = 21/211 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G V++V GASRGIG A++L G V+ T R+ + +
Sbjct: 28 SGQVAVVTGASRGIGAAIARKLGS---LGARVVLTARDVEKLRAVEREIVAAGGEAESHA 84
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
DL+ I A A + +G ++L+N +G+ L K + ++ VN
Sbjct: 85 CDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPL----HTMKPAEWDALI--AVN 138
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
P L+++ +P + G + N+S+ G +Y ASK LN L
Sbjct: 139 LKAPYLLLRAFAPAMIAAKRG------HIINISSLAGKNPV---ADGAAYTASKWGLNGL 189
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
S + E + + V + PG+V T+
Sbjct: 190 MTSAAEELRQHQVRVSLV--APGSVRTEFGV 218
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 3e-16
Identities = 43/207 (20%), Positives = 79/207 (38%), Gaps = 24/207 (11%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD-LKNRFPERLDVLQLDL 88
V+++ GASRGIG A+ L + R+ + + L + LD+
Sbjct: 4 VAVITGASRGIGEAIARALARDGYA--LALGARSVDRLEKIAHELMQEQGVEVFYHHLDV 61
Query: 89 TVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVG 148
+ ++E +K + E++G +++++ +G+ + L E+ M EVN +G
Sbjct: 62 SKAESVEEFSKKVLERFGDVDVVVANAGL----GYFKRLEEL-SEEEFHEM--IEVNLLG 114
Query: 149 PILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKS 208
+K LK G + S + + Y ++K A L ++
Sbjct: 115 VWRTLKAFLDSLKRTGGLA------LVTTS----DVSARLIPYGGGYVSTKWAARALVRT 164
Query: 209 VSVEFGRKKDPVICILLHPGTVDTDLS 235
+E V L PG VDT
Sbjct: 165 FQIE----NPDVRFFELRPGAVDTYFG 187
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 3e-16
Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 36/215 (16%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G L+ GASRGIG A+ L K + V R+ L L L L
Sbjct: 4 MKGAVLITGASRGIGEATARLLHAKGYR--VGLMARD---EKRLQALAAELEGAL-PLPG 57
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL-----MLA 141
D+ E + +++E +G L+ L+N +G+ + V + +L +
Sbjct: 58 DVREEGDWARAVAAMEEAFGELSALVNNAGVGV----------MKPVHELTLEEWRLV-- 105
Query: 142 YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-GDNRLGGWHSYRASKA 200
+ N G L I+H P L + R + N VGS+ G N G +Y ASK
Sbjct: 106 LDTNLTGAFLGIRHAVPAL------LRRGGGTIVN----VGSLAGKNPFKGGAAYNASKF 155
Query: 201 ALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS 235
L L + ++ V+ + PG+VDT +
Sbjct: 156 GLLGLAGAAMLDLREANVRVVNV--LPGSVDTGFA 188
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 4e-16
Identities = 47/224 (20%), Positives = 85/224 (37%), Gaps = 46/224 (20%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
++ GA+ G+G A++L + VI R+ +++V +L
Sbjct: 15 AQRTVVITGANSGLGAVTARELARRGAT--VIMAVRDTRKGE---AAARTMAGQVEVREL 69
Query: 87 DLTVESTIEASAKSIK---EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYE 143
DL S++ + ++LIN +GI+++P T++ E +
Sbjct: 70 DL-------QDLSSVRRFADGVSGADVLINNAGIMAVP----YALTVDGFE---SQIG-- 113
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-------GDNRLGGWHSYR 196
N +G + + P L +R V V++++ G I R W +Y
Sbjct: 114 TNHLGHFALTNLLLPRLT------DR-VVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYS 166
Query: 197 ASKAALNQLTKSVSVEFGRK----KDPVICILLHPGTVDTDLSR 236
SK A N L + E R+ P+ + HPG T+L
Sbjct: 167 QSKLA-NLLF---TSELQRRLTAAGSPLRALAAHPGYSHTNLQG 206
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 4e-16
Identities = 47/217 (21%), Positives = 83/217 (38%), Gaps = 38/217 (17%)
Query: 27 KGGVSLVQGASRGIG----LEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPER 80
+V GA R IG + FA++ G V+ GA + +
Sbjct: 7 TNRTIVVAGAGRDIGRACAIRFAQE-------GANVVLTYNGAAEGAATAVAEIEKLGRS 59
Query: 81 LDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ--PETTLNKVEKSSL 138
++ DLT + +EA+ + +K+G ++ L++ +G L + E ++V
Sbjct: 60 ALAIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQV----- 114
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
+VN L K P + GG + S++ G G G +Y S
Sbjct: 115 ---LDVNLTSLFLTAKTALPKMAKGGAIV--------TFSSQAGRDGGG--PGALAYATS 161
Query: 199 KAALNQLTKSVSVEFGRKKDPVICI-LLHPGTVDTDL 234
K A+ T+ ++ E G K I + + PG + T
Sbjct: 162 KGAVMTFTRGLAKEVGPK----IRVNAVCPGMISTTF 194
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 4e-16
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 20/213 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G ++LV G SRGIG A+ LLE G V R+ + + + +
Sbjct: 28 AGRIALVTGGSRGIGQMIAQGLLEA---GARVFICARDAEACADTATRLSAYGDCQ-AIP 83
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGI-LSIPNVLQPETTLNKVEKSSLMLAYEV 144
DL+ E+ A+++ E L++L+N +G P + KV ++
Sbjct: 84 ADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKV--------MQL 135
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N I+ + PLL+ + + A V N+ + G + +Y SKAAL+Q
Sbjct: 136 NVTSVFSCIQQLLPLLRRSAS--AENPARVINIGSVAGISA-MGEQAY-AYGPSKAALHQ 191
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP 237
L++ ++ E + V I PG + ++R
Sbjct: 192 LSRMLAKELVGEHINVNVIA--PGRFPSRMTRH 222
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 4e-16
Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 25/235 (10%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDLKNRFPERLDVLQLDL 88
V+LV GA +GIG A +L++ G +A N A + N+ +++D+
Sbjct: 4 VALVTGAGQGIGKAIALRLVKD---GFAVAIADYNDATAKAVASEINQAGGHAVAVKVDV 60
Query: 89 TVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEVNAV 147
+ + A+ + ++ G ++++N +G+ + ++KV Y +N
Sbjct: 61 SDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKV--------YNINVK 112
Query: 148 GPILVIKHMSP-LLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G I I+ K G G + N ++ G +G+ L Y +SK A+ LT
Sbjct: 113 GVIWGIQAAVEAFKKEGHGG------KIINACSQAGHVGNPELA---VYSSSKFAVRGLT 163
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261
++ + + V PG V T + R V E + + I
Sbjct: 164 QTAARDLAPLGITVNGY--CPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRI 216
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 4e-16
Identities = 38/212 (17%), Positives = 82/212 (38%), Gaps = 27/212 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIA----TCRNPNGATGLLDLKNRFPERLD 82
K V ++ G + +G AK + + ++ + A L D ++
Sbjct: 10 KNKVIVIAGGIKNLGALTAKTFALE---SVNLVLHYHQAKDSDTANKLKDELEDQGAKVA 66
Query: 83 VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAY 142
+ Q DL+ E + ++++G +++ IN G + ++ ET+ + + M
Sbjct: 67 LYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIV--ETSEAEFDA---MDT- 120
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
+N IK + + G I ++ + + G + +Y +KA +
Sbjct: 121 -INNKVAYFFIKQAAKHMNPNGHII--------TIATSLLAAY---TGFYSTYAGNKAPV 168
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
T++ S E +++ V I PG +DT
Sbjct: 169 EHYTRAASKELMKQQISVNAI--APGPMDTSF 198
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 5e-16
Identities = 49/239 (20%), Positives = 82/239 (34%), Gaps = 26/239 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLD-LKNRFPERLDV 83
+ ++V GA++ IG A +L + G VI + A L D L V
Sbjct: 22 EAPAAVVTGAAKRIGRAIAVKLHQT---GYRVVIHYHNSAEAAVSLADELNKERSNTAVV 78
Query: 84 LQLDLTVESTIEASA----KSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLM 139
Q DLT + + AS S +G ++L+N + P L + ++
Sbjct: 79 CQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASA-FYPTPLVQGDHEDNSNGKTVE 137
Query: 140 LAYE----VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSY 195
NA+ P L+ + K + NL + + Y
Sbjct: 138 TQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQP---CMAFSLY 194
Query: 196 RASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------FQRNVPEGKLF 248
K AL LT+S ++E V + PG ++ ++R VP G+
Sbjct: 195 NMGKHALVGLTQSAALELAPYGIRVNGV--APGVSLLPVAMGEEEKDKWRRKVPLGRRE 251
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 7e-16
Identities = 36/217 (16%), Positives = 82/217 (37%), Gaps = 33/217 (15%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
+ V ++ GAS+GIG + ++ V+AT R+ + + +
Sbjct: 27 QQKVVVITGASQGIGAGLVRAYRDR---NYRVVATSRSIKPSAD---------PDIHTVA 74
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ--PETTLNKVEKSSLMLAYE 143
D++ T + + E++G ++ L+N +G+ + + +
Sbjct: 75 GDISKPETADRIVREGIERFGRIDSLVNNAGV-FLAKPFVEMTQEDYDHN--------LG 125
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
VN G + + + + G+G +V +++ + + +K LN
Sbjct: 126 VNVAGFFHITQRAAAEMLKQGSG-----HIV-SITTSLVDQPMVGMPSAL-ASLTKGGLN 178
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR 240
+T+S+++EF R V + PG + T +
Sbjct: 179 AVTRSLAMEFSRSGVRVNAV--SPGVIKTPMHPAETH 213
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 7e-16
Identities = 48/236 (20%), Positives = 80/236 (33%), Gaps = 34/236 (14%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G V GA +GIG A +E G V +
Sbjct: 6 SGKNVWVTGAGKGIGYATALAFVEA---GAKVTGFDQAFTQEQY----------PFATEV 52
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVEKSSLMLAYEV 144
+D+ + + + + + L+ L+NA+GIL + Q + + + V
Sbjct: 53 MDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQT--------FAV 104
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N G + + + G A+V +++ G +Y ASKAAL
Sbjct: 105 NVGGAFNLFQQTMNQFRRQRGG-----AIV-TVASDAAHTPR---IGMSAYGASKAALKS 155
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNI 260
L SV +E + PG+ DTD+ R + + + F Q L I
Sbjct: 156 LALSVGLELAGSGVRCNVVS--PGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGI 209
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 7e-16
Identities = 40/207 (19%), Positives = 79/207 (38%), Gaps = 29/207 (14%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
+ ++ GAS G+G E AK + T R+ + L + N + DL
Sbjct: 3 LIVITGASSGLGAELAKLYDAEGKA--TYLTGRS---ESKLSTVTNCLSNNVGYRARDLA 57
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
+E + + + +++++G + E +++ ++ E N
Sbjct: 58 SHQEVEQLFEQL---DSIPSTVVHSAGSGYFGLLQ--EQDPEQIQT---LI--ENNLSSA 107
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-GDNRLGGWHSYRASKAALNQLTKS 208
I V++ + K ++ V VV + S +Y A K A+ L +S
Sbjct: 108 INVLRELVKRYK------DQPVNVV-M----IMSTAAQQPKAQESTYCAVKWAVKGLIES 156
Query: 209 VSVEFGRKKDPVICILLHPGTVDTDLS 235
V +E K P+ I ++PG + T+
Sbjct: 157 VRLEL--KGKPMKIIAVYPGGMATEFW 181
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 1e-15
Identities = 33/223 (14%), Positives = 71/223 (31%), Gaps = 33/223 (14%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQLDL 88
++LV A G + L + G V+ + A R +
Sbjct: 3 IALVTHARHFAGPAAVEALTQD---GYTVVCHDASFADAA------ERQRFESENPGTIA 53
Query: 89 TVESTIEASAKSIKEKYGSLNLLINASGI----LSIPNVLQPETTLNKVEKSSLMLAYEV 144
E E + + +++ +++ I +P E + ++ +E
Sbjct: 54 LAEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQM--------FEA 105
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
++ PIL+++ L+ G +V+ +++ VG Y ++AA
Sbjct: 106 LSIFPILLLQSAIAPLRAAGGA-----SVI-FITSSVGKKPL---AYNPLYGPARAATVA 156
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL 247
L +S + R + I P + P +L
Sbjct: 157 LVESAAKTLSRDGILLYAI--GPNFFNNPTYFPTSDWENNPEL 197
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Length = 267 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 1e-15
Identities = 50/219 (22%), Positives = 81/219 (36%), Gaps = 33/219 (15%)
Query: 27 KGGVSLVQGAS--RGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLL-DLKNRFPERL 81
KG V +V GAS +G+G+E A+ E G I GA + +L+ + +
Sbjct: 19 KGKVVVVTGASGPKGMGIEAARGCAEM---GAAVAITYASRAQGAEENVKELEKTYGIKA 75
Query: 82 DVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGI-LSIPNVLQPETTLNKVEKSSLML 140
+ + + E K + +G ++ I +G + N V
Sbjct: 76 KAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHV------- 128
Query: 141 AYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKA 200
+V+ G K + K GTG + ++ G I N SY +KA
Sbjct: 129 -VQVDLNGTFHCAKAVGHHFKERGTG------SLVITASMSGHIA-NFPQEQTSYNVAKA 180
Query: 201 ALNQLTKSVSVE---FGRKKDPVICILLHPGTVDTDLSR 236
+ +S++ E F R V I PG +DT LS
Sbjct: 181 GCIHMARSLANEWRDFAR----VNSI--SPGYIDTGLSD 213
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 2e-15
Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 34/226 (15%)
Query: 16 FTSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT--CRNPNGATGLLDL 73
+ S S+ G + V G SRGIG AK+L + G +A A ++
Sbjct: 19 YFQSMMTSISLAGKTAFVTGGSRGIGAAIAKRLALE---GAAVALTYVNAAERAQAVVSE 75
Query: 74 KNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKV 133
+ R ++ D IE + + E G L++L+N++GI +
Sbjct: 76 IEQAGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGI----------WHSAPL 125
Query: 134 EKSSL-----MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188
E++++ ++A VN P + I+ S L GG I + + + +
Sbjct: 126 EETTVADFDEVMA--VNFRAPFVAIRSASRHLGDGGRII--------TIGSNLAELVPW- 174
Query: 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
G Y ASKAAL LTK ++ + G + V + HPG+ DTD+
Sbjct: 175 -PGISLYSASKAALAGLTKGLARDLGPRGITVNIV--HPGSTDTDM 217
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-15
Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 38/232 (16%)
Query: 16 FTSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLK 74
+ A+ + L+ GAS GIG A + LE ++ +I R L +LK
Sbjct: 21 MSQGRKAAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARR---LEKLEELK 77
Query: 75 NRFPERLD-----VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETT 129
+ V QLD+T I+ +++ +++ +++L+N +G ++
Sbjct: 78 KTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAG-KALG-------- 128
Query: 130 LNKVEKSSL-----MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184
++V + + + ++ N I + + + P+ + ++ + N +GSI
Sbjct: 129 SDRVGQIATEDIQDV--FDTNVTALINITQAVLPIFQ------AKNSGDIVN----LGSI 176
Query: 185 -GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS 235
G + Y ASK A+ T S+ E K VI I PG V+T+ S
Sbjct: 177 AGRDAYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILI--APGLVETEFS 226
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 2e-15
Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 32/226 (14%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
K ++++ G + GIG A++ +G IA + A R+ ++
Sbjct: 6 KDKLAVITGGANGIGRAIAERFAV---EGADIAIA-DLVPAPEAEAAIRNLGRRVLTVKC 61
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL-----MLA 141
D++ +EA K + +G ++L+N +GI L ++ +
Sbjct: 62 DVSQPGDVEAFGKQVISTFGRCDILVNNAGI----------YPLIPFDELTFEQWKKTFE 111
Query: 142 YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
+N L+ K P +K G G ++ NL++ + + Y ++KAA
Sbjct: 112 --INVDSGFLMAKAFVPGMKRNGWG-----RII-NLTSTTYWLK-IE--AYTHYISTKAA 160
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL 247
T++++ + G+ V I P V T + + L
Sbjct: 161 NIGFTRALASDLGKDGITVNAI--APSLVRTATTEASALSAMFDVL 204
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 2e-15
Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 32/220 (14%)
Query: 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERL 81
S++++ V +V G+ GIG +A+ L + G V+ N A +
Sbjct: 4 SMRFENKVGIVTGSGGGIGQAYAEALARE---GAAVVVADINAEAAEAVAKQIVADGGTA 60
Query: 82 DVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL--- 138
+ +D++ + +A A ++G ++ L+N + I L+ +
Sbjct: 61 ISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAAI-------FGGMKLDFLLTIDPEYY 113
Query: 139 --MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR 196
++ VN G + + + + G G + N S+ + N Y
Sbjct: 114 KKFMS--VNLDGALWCTRAVYKKMTKRGGG------AIVNQSSTAAWLYSN------YYG 159
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
+K +N LT+ +S E G + + I PG +DT+ +R
Sbjct: 160 LAKVGINGLTQQLSRELGGRNIRINAI--APGPIDTEANR 197
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 3e-15
Identities = 39/230 (16%), Positives = 72/230 (31%), Gaps = 41/230 (17%)
Query: 29 GVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNG-----------ATGLLDLKNR 76
V + G++ GIG + L G VI R T + + +R
Sbjct: 2 SVIAITGSASGIGAALKELLARA---GHTVIGIDRGQADIEADLSTPGGRETAVAAVLDR 58
Query: 77 FPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKS 136
LD L V T L + +N G+ ++ + L + +
Sbjct: 59 CGGVLDGLVCCAGVGVT---------AANSGLVVAVNYFGVSALLDGLAEALSRGQQPA- 108
Query: 137 SLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR 196
A V ++ P+++ G A G +Y
Sbjct: 109 ----AVIVGSIAATQPGAAELPMVEAMLAGD------EARAIELAEQQG----QTHLAYA 154
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGK 246
SK A+ L + V++ + + + PG V+T L + + + G+
Sbjct: 155 GSKYAVTCLARRNVVDWAGRGVRLNVV--APGAVETPLLQASKADPRYGE 202
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 4e-15
Identities = 40/213 (18%), Positives = 83/213 (38%), Gaps = 18/213 (8%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDLKNRFPERLDVL- 84
G + V G + G+G+ +QLL +GC +A + L +V+
Sbjct: 7 AGRTAFVTGGANGVGIGLVRQLLN---QGCKVAIADIRQDSIDKALATLEAEGSGPEVMG 63
Query: 85 -QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYE 143
QLD+ + +A ++ ++G +++L N +G+ + E++ + +
Sbjct: 64 VQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIE--ESSYDDWDW-----LLG 116
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
VN G + + P + E+ V N ++ + G Y +K A+
Sbjct: 117 VNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPG---IYNTTKFAVR 173
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
L++S+ K + +L PG V + +
Sbjct: 174 GLSESLHYSL--LKYEIGVSVLCPGLVKSYIYA 204
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 4e-15
Identities = 46/214 (21%), Positives = 92/214 (42%), Gaps = 23/214 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVL 84
+ +LV G+SRG+G A +L E G VI R+ A + + ++ V+
Sbjct: 3 QNKCALVTGSSRGVGKAAAIRLAE---NGYNIVINYARSKKAALETAEEIEKLGVKVLVV 59
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
+ ++ + I+ + I E +G L++ +N + + ++E++ +
Sbjct: 60 KANVGQPAKIKEMFQQIDETFGRLDVFVNNAAS-------GVLRPVMELEETHWDWTMNI 112
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
NA + + + L++ G G + ++S+ L + + SKAAL
Sbjct: 113 NAKALLFCAQEAAKLMEKNGGG------HIVSISSLGSIRY---LENYTTVGVSKAALEA 163
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
LT+ ++VE K+ V + G +DTD + F
Sbjct: 164 LTRYLAVELSPKQIIVNAVS--GGAIDTDALKHF 195
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 4e-15
Identities = 48/235 (20%), Positives = 88/235 (37%), Gaps = 24/235 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLD-LKNRFPERLDV 83
KG V++V G++ GIGL A L +G V+ + + L + ++
Sbjct: 3 KGKVAVVTGSTSGIGLGIATALAA---QGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLY 59
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYE 143
DL+ + + + G +++L+N +GI + EK +LA
Sbjct: 60 DGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIED-----FPTEKWDAILA-- 112
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
+N P +K G G + N+++ G + +Y A+K +
Sbjct: 113 LNLSAVFHGTAAALPHMKKQGFG------RIINIASAHGLVAS---ANKSAYVAAKHGVV 163
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLL 258
TK ++E + I PG V T L + E +E + ++LL
Sbjct: 164 GFTKVTALETAGQGITANAIC--PGWVRTPLVEKQISALAEKNGVDQETAARELL 216
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255 | Back alignment and structure |
|---|
Score = 72.1 bits (178), Expect = 5e-15
Identities = 48/223 (21%), Positives = 81/223 (36%), Gaps = 35/223 (15%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G +LV G++RG+G +A+ L G VI +D R +
Sbjct: 8 TGKTALVTGSARGLGFAYAEGLAAA---GARVILNDIRATLLAESVDTLTRKGYDAHGVA 64
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGI-LSIPNVLQPETTLNKVEKSSLMLAYEV 144
D+T E IEA+ + + +++LIN +GI P V KV +
Sbjct: 65 FDVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKV--------IDT 116
Query: 145 NAVGPIL----VIKHMSPLLKVGGTG--IERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
N L K M + G I + +L+++ Y A+
Sbjct: 117 NLTSAFLVSRSAAKRM---IARNSGGKIIN-----IGSLTSQAARPTV------APYTAA 162
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN 241
K + LT S++ E+ + I PG + TD++ +
Sbjct: 163 KGGIKMLTCSMAAEWAQFNIQTNAIG--PGYILTDMNTALIED 203
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 5e-15
Identities = 50/240 (20%), Positives = 88/240 (36%), Gaps = 32/240 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
KG +LV G++ GIGL A+ L G ++ L R +
Sbjct: 3 KGKTALVTGSTSGIGLGIAQVLAR---AGANIVLNGFGDPAPA--LAEIARHGVKAVHHP 57
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLN--KVEKSSLMLAYE 143
DL+ + IEA + ++G +++L+N +GI Q + +E ++A
Sbjct: 58 ADLSDVAQIEALFALAEREFGGVDILVNNAGI-------QHVAPVEQFPLESWDKIIA-- 108
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
+N + P ++ G ++ N+++ G +G G +Y A+K +
Sbjct: 109 LNLSAVFHGTRLALPGMRARNWG-----RII-NIASVHGLVGS---TGKAAYVAAKHGVV 159
Query: 204 QLTKSVSVEFGRKKDPV--ICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261
LTK V +E IC PG V T L + + + L
Sbjct: 160 GLTKVVGLETATSNVTCNAIC----PGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQ 215
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 71.7 bits (177), Expect = 5e-15
Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 31/217 (14%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G +LV GA +GIG + K L G V+A R + L + +
Sbjct: 6 SGLRALVTGAGKGIGRDTVKALHAS---GAKVVAVTRTNSDLVSLAKECPGI----EPVC 58
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
+DL E + G ++LL+N + + ++QP + K VN
Sbjct: 59 VDLGDWDATEKAL----GGIGPVDLLVNNAAL----VIMQPFLEVTKEAFDRSF---SVN 107
Query: 146 AVGPILVIKHMSP-LLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
V + ++ ++ G G ++V N+S+ V + L +Y ++K A+
Sbjct: 108 LRSVFQVSQMVARDMINRGVPG-----SIV-NVSSMVAHVTFPNLI---TYSSTKGAMTM 158
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN 241
LTK++++E G K V + +P V TD+ + +
Sbjct: 159 LTKAMAMELGPHKIRVNSV--NPTVVLTDMGKKVSAD 193
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244 | Back alignment and structure |
|---|
Score = 71.7 bits (177), Expect = 5e-15
Identities = 50/220 (22%), Positives = 83/220 (37%), Gaps = 37/220 (16%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G LV GA +GIG + L G V+A R L+ + +
Sbjct: 6 AGRRVLVTGAGKGIGRGTVQALHAT---GARVVAVSRTQADLDSLVRECPGI----EPVC 58
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
+DL E + G ++LL+N + + +LQP + K EVN
Sbjct: 59 VDLGDWEATERAL----GSVGPVDLLVNNAAV----ALLQPFLEVTKEAFDRSF---EVN 107
Query: 146 AVGPIL----VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
I V + + + G G A+V N+S++ Y ++K A
Sbjct: 108 LRAVIQVSQIVARGL---IARGVPG-----AIV-NVSSQCSQRAVTNHS---VYCSTKGA 155
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN 241
L+ LTK +++E G K V + +P V T + + +
Sbjct: 156 LDMLTKVMALELGPHKIRVNAV--NPTVVMTSMGQATWSD 193
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 6e-15
Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 23/209 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVL 84
+ V+ + G GIG A+ + GC VIA+ P T L R L
Sbjct: 26 RDKVAFITGGGSGIGFRIAEIFMRH---GCHTVIASRSLPRVLTAARKLAGATGRRCLPL 82
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
+D+ + A+ +++G +++LIN + N L P L+ ++M ++
Sbjct: 83 SMDVRAPPAVMAAVDQALKEFGRIDILINCAAG----NFLCPAGALSFNAFKTVM---DI 135
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
+ G V + + G V+ N++A +G+ G ++KAA++
Sbjct: 136 DTSGTFNVSRVLYEKFFRDHGG------VIVNITATLGNRG---QALQVHAGSAKAAVDA 186
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTD 233
+T+ ++VE+G + V + PG +
Sbjct: 187 MTRHLAVEWGPQNIRVNSL--APGPISGT 213
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 2e-14
Identities = 57/228 (25%), Positives = 91/228 (39%), Gaps = 31/228 (13%)
Query: 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIAT-CRNPNGATGLLDLKNRFPE 79
A+ KG V+LV GASRGIG AK+L G V A +
Sbjct: 1 ANSMLKGKVALVTGASRGIGRAIAKRLAND---GALVAIHYGNRKEEAEETVYEIQSNGG 57
Query: 80 RLDVLQLDLTVESTIEASAKSIKEK------YGSLNLLINASGILSIPNVLQPETTLNKV 133
+ +L +EA S+ + ++LIN +GI P ETT
Sbjct: 58 SAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIG--PGAFIEETTEQFF 115
Query: 134 EKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWH 193
++ M++ VNA P +I+ L+ I N+S+ I L +
Sbjct: 116 DR---MVS--VNAKAPFFIIQQALSRLRDNSRII--------NISSAATRIS---LPDFI 159
Query: 194 SYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN 241
+Y +K A+N +T +++ + G + V I PG V TD++ +
Sbjct: 160 AYSMTKGAINTMTFTLAKQLGARGITVNAI--LPGFVKTDMNAELLSD 205
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 2e-14
Identities = 43/218 (19%), Positives = 81/218 (37%), Gaps = 40/218 (18%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLL-DLKNRFPERLDVL 84
LV G ++GIG A G V R+P + + +L + +
Sbjct: 40 SARSVLVTGGTKGIGRGIATVFARA---GANVAVAARSPRELSSVTAELGELGAGNVIGV 96
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLA--- 141
+LD++ + +A+++ + +G+L+++ +GI + +
Sbjct: 97 RLDVSDPGSCADAARTVVDAFGALDVVCANAGI----------F------PEARLDTMTP 140
Query: 142 ------YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSY 195
+VN G + ++ L G G V S+ G + GW Y
Sbjct: 141 EQLSEVLDVNVKGTVYTVQACLAPLTASGRG------RVILTSSITGPVTGY--PGWSHY 192
Query: 196 RASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
ASKAA ++ ++E + V IL PG + T+
Sbjct: 193 GASKAAQLGFMRTAAIELAPRGVTVNAIL--PGNILTE 228
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-14
Identities = 41/213 (19%), Positives = 82/213 (38%), Gaps = 26/213 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC--RNPNGATGLLDLKNRFPERLDVL 84
V++V G RGIGL A+ L G IA + G ++ + R+ L
Sbjct: 28 ARPVAIVTGGRRGIGLGIARALAA---SGFDIAITGIGDAEGVAPVIAELSGLGARVIFL 84
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKSSLMLA 141
+ DL S+ +A+ ++ ++G ++ L+N +GI SI + + +
Sbjct: 85 RADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTI-------- 136
Query: 142 YEVNAVGPILVIKH-MSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKA 200
VN G + + + +L + N+++ + + Y SKA
Sbjct: 137 VGVNLRGTVFFTQAVLKAMLASDARASRSII----NITSVSAVMT-SP--ERLDYCMSKA 189
Query: 201 ALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
L ++ +++ V + PG + +D
Sbjct: 190 GLAAFSQGLALRLAETGIAVFEV--RPGIIRSD 220
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-14
Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 34/211 (16%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
+ LV GA+ G G ++ +++ K VIAT R L +LK+ + L + QLD+
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHK--VIATGRR---QERLQELKDELGDNLYIAQLDVR 56
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL-----MLAYEV 144
+ IE S+ ++ ++++L+N +G L++ + K+S+ M +
Sbjct: 57 NRAAIEEMLASLPAEWCNIDILVNNAG-LALG--------MEPAHKASVEDWETM--IDT 105
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-GDNRLGGWHSYRASKAALN 203
N G + + + + P + +ER+ + N +GS G G + Y A+KA +
Sbjct: 106 NNKGLVYMTRAVLPGM------VERNHGHIIN----IGSTAGSWPYAGGNVYGATKAFVR 155
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
Q + ++ + V I PG V
Sbjct: 156 QFSLNLRTDLHGTAVRVTDI--EPGLVGGTE 184
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-14
Identities = 51/216 (23%), Positives = 85/216 (39%), Gaps = 29/216 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDLKNRFPERLDVLQ 85
K V +V GAS G+G + L ++ G + P + +
Sbjct: 6 KSRVFIVTGASSGLGAAVTRMLAQE---GATVLGLDLKPPAGE---EPAAELGAAVRFRN 59
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML---AY 142
D+T E+ A+ K+++G ++ L+N +G E L + +L
Sbjct: 60 ADVTNEADATAALAFAKQEFGHVHGLVNCAGT------APGEKILGRSGPHALDSFARTV 113
Query: 143 EVNAVGPILVIKHMSPL---LKVGGTGIERDVAV-VANLSARVGSIGDNRLGGWHSYRAS 198
VN +G +I+ + + + G ER V V A+++A G IG +Y AS
Sbjct: 114 AVNLIGTFNMIRLAAEVMSQGEPDADG-ERGVIVNTASIAAFDGQIGQA------AYAAS 166
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
K + LT + E R V+ I PG DT +
Sbjct: 167 KGGVAALTLPAARELARFGIRVVTIA--PGIFDTPM 200
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 3e-14
Identities = 47/231 (20%), Positives = 85/231 (36%), Gaps = 48/231 (20%)
Query: 27 KGGVSLVQGASRGIG----LEFAKQLLEKNDKGC-VIAT--CRNPNGATGLLDLKNRFPE 79
+G V+ V GA+RG G + A++ G +IA C+ + PE
Sbjct: 10 EGKVAFVTGAARGQGRSHAVRLAQE-------GADIIAVDICKPIRAGVVDTAIPASTPE 62
Query: 80 RLD--------------VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVL- 124
L ++D+ ++A+ S E+ G L++++ +GI + + L
Sbjct: 63 DLAETADLVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLD 122
Query: 125 -QPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183
E ++ ++N G +K P + GG G + S+ G
Sbjct: 123 KTSEEDWTEM--------IDINLAGVWKTVKAGVPHMIAGGRG-----GSIILTSSVGGL 169
Query: 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
Y A+K + L ++ VE G+ V + HP V T +
Sbjct: 170 KAY---PHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSV--HPTHVKTPM 215
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 3e-14
Identities = 50/222 (22%), Positives = 84/222 (37%), Gaps = 35/222 (15%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLD-LKNRFPERLDVL 84
G + V GA GIGLE + G +I R L +
Sbjct: 10 DGACAAVTGAGSGIGLEICRAFAAS---GARLILIDREAAALDRAAQELGAA---VAARI 63
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGI-LSIPNVLQPETTLNKVEKSSLMLAYE 143
D+T + A+A E +++L+N++GI + + T +V
Sbjct: 64 VADVTDAEAMTAAAAEA-EAVAPVSILVNSAGIARLHDALETDDATWRQV--------MA 114
Query: 144 VNAVGPIL----VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASK 199
VN G + M + R + NL + G+I NR SY ASK
Sbjct: 115 VNVDGMFWASRAFGRAM----------VARGAGAIVNLGSMSGTIV-NRPQFASSYMASK 163
Query: 200 AALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN 241
A++QLT++++ E+ + V + PG V T+++ +
Sbjct: 164 GAVHQLTRALAAEWAGRGVRVNALA--PGYVATEMTLKMRER 203
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 3e-14
Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 22/210 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLD-LKNRFPERLDVL 84
+G V+ + G G+G L G R + + + ++ ++ +
Sbjct: 25 QGKVAFITGGGTGLGKGMTTLLSSL---GAQCVIASRKMDVLKATAEQISSQTGNKVHAI 81
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
Q D+ ++ + + + G N++IN + N + P L+ ++ ++
Sbjct: 82 QCDVRDPDMVQNTVSELIKVAGHPNIVINNAAG----NFISPTERLSPNAWKTIT---DI 134
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
G V + L G A +++ G G ++KA +
Sbjct: 135 VLNGTAFVTLEIGKQLIKAQKG-----AAFLSITTIYAETG---SGFVVPSASAKAGVEA 186
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
++KS++ E+G+ I PG + T
Sbjct: 187 MSKSLAAEWGKYGMRFNVIQ--PGPIKTKG 214
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 4e-14
Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 24/214 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNP-NGATGLLDLKNRFPERLDVL 84
+G V+LV G SRG+G A+ L E GC V+ RN + L ++
Sbjct: 20 RGRVALVTGGSRGLGFGIAQGLAEA---GCSVVVASRNLEEASEAAQKLTEKYGVETMAF 76
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGI-LSIPNVLQPETTLNKVEKSSLMLAYE 143
+ D++ ++ +++KEK+G L+ ++NA+GI P P +V + E
Sbjct: 77 RCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQV-----I---E 128
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
VN G V + LL+ + N+ + +Y ASK +
Sbjct: 129 VNLFGTYYVCREAFSLLRESDNP------SIINIGSLTVEEVTMP--NISAYAASKGGVA 180
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP 237
LTK+++ E+GR V I PG T ++
Sbjct: 181 SLTKALAKEWGRYGIRVNVIA--PGWYRTKMTEA 212
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 5e-14
Identities = 46/227 (20%), Positives = 85/227 (37%), Gaps = 35/227 (15%)
Query: 17 TSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR 76
+S + GA+ G G A++ E ++ T R L L
Sbjct: 10 SSGLVPRGSHMSSTLFITGATSGFGEACARRFAEAGWS--LVLTGRR---EERLQALAGE 64
Query: 77 FPERLDV--LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVE 134
+ V L LD+ + + A+ ++ E++ +L LIN +G L++ + +
Sbjct: 65 LSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAG-LALG--------TDPAQ 115
Query: 135 KSSL-----MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-GDNR 188
L M + N G + + + P L G G A + N +GS+ G
Sbjct: 116 SCDLDDWDTM--VDTNIKGLLYSTRLLLPRLIAHGAG-----ASIVN----LGSVAGKWP 164
Query: 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS 235
G H Y +KA + Q + ++ + V + PG +++ S
Sbjct: 165 YPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNL--EPGLCESEFS 209
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 8e-14
Identities = 29/215 (13%), Positives = 72/215 (33%), Gaps = 33/215 (15%)
Query: 30 VSLVQGASRGIGLEFAKQLLEK-----NDKGCVIATCRNPNGATGLLDLKNRFPERLDVL 84
+ L+ GA +GIG A + + + ++ + R + D +
Sbjct: 4 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTI 63
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL-----M 139
D++ + + I E+YG ++ L+N +G+ + +
Sbjct: 64 TADISDMADVRRLTTHIVERYGHIDCLVNNAGV----------GRFGALSDLTEEDFDYT 113
Query: 140 LAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASK 199
+ N G + + + L++ +G + +++ + Y SK
Sbjct: 114 M--NTNLKGTFFLTQALFALMERQHSG------HIFFITSVAATKAF---RHSSIYCMSK 162
Query: 200 AALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
L +++ + + + + PG V T +
Sbjct: 163 FGQRGLVETMRLYARKCNVRITDV--QPGAVYTPM 195
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 8e-14
Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 34/215 (15%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDLKNRFPERLDVLQ 85
K V ++ G S G+G A + + +G + R +FP ++ +Q
Sbjct: 5 KEKVVIITGGSSGMGKGMATRFAK---EGARVVITGRTKEKLEEAKLEIEQFPGQILTVQ 61
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL------M 139
+D+ I+ + I EK+G +++LIN + + E S+ +
Sbjct: 62 MDVRNTDDIQKMIEQIDEKFGRIDILINNAAG----------NFICPAEDLSVNGWNSVI 111
Query: 140 LAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASK 199
+ G + + G + N+ A G A+K
Sbjct: 112 ---NIVLNGTFYCSQAIGKYWIEKGIK-----GNIINMVATYAWDAG---PGVIHSAAAK 160
Query: 200 AALNQLTKSVSVEFGRKKD-PVICILLHPGTVDTD 233
A + +TK+++VE+GRK V I PG ++
Sbjct: 161 AGVLAMTKTLAVEWGRKYGIRVNAI--APGPIERT 193
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 9e-14
Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 37/234 (15%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLD-LKNRFPERLDV 83
V+LV GA++ +G A+ L + G + R+ A L L R P
Sbjct: 8 TVPVALVTGAAKRLGRSIAEGLHAE---GYAVCLHYHRSAAEANALSATLNARRPNSAIT 64
Query: 84 LQLDL-----------------TVESTIEASAKSIKEKYGSLNLLINASGILSIPNVL-- 124
+Q DL T+ + + +G ++L+N + P L
Sbjct: 65 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSF-YPTPLLR 123
Query: 125 ------QPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178
+P + +++ + NA+ P +IK + + + N+
Sbjct: 124 NDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMV 183
Query: 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDT 232
+ + L G+ Y +K AL LT+S ++E + V + PG
Sbjct: 184 DAMTNQP---LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGV--GPGLSVL 232
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 1e-13
Identities = 33/238 (13%), Positives = 83/238 (34%), Gaps = 25/238 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLD-LKNRFP-ERLDV 83
+G +++V S G+G A +L G ++ RN + + ++D+
Sbjct: 6 QGKLAVVTAGSSGLGFASALELAR---NGARLLLFSRNREKLEAAASRIASLVSGAQVDI 62
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYE 143
+ D+ I+ + ++ G ++L+ ++G P ++ +Y
Sbjct: 63 VAGDIREPGDIDRLFEKARD-LGGADILVYSTG---GP----RPGRFMELGVEDWDESYR 114
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
+ A + V + + + G G + + + L + +
Sbjct: 115 LLARSAVWVGRRAAEQMVEKGWG------RMVYIGSVTLLRPWQDLA---LSNIMRLPVI 165
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261
+ +++++E V +L P + TD R T E +++ + + I
Sbjct: 166 GVVRTLALELAPHGVTVNAVL--PSLILTDRVRSLAEERARRSGITVEEALKSMASRI 221
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 1e-13
Identities = 41/212 (19%), Positives = 76/212 (35%), Gaps = 25/212 (11%)
Query: 27 KGGVSLVQGAS-RGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLD-LKNRFPERLDV 83
KG V LV A+ GIG A++ L + G V+ + + D L + R++
Sbjct: 21 KGKVVLVTAAAGTGIGSTTARRALLE---GADVVISDYHERRLGETRDQLADLGLGRVEA 77
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYE 143
+ D+T ++A EK G L++L+N +G+ +T + +
Sbjct: 78 VVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGL-------GGQTPVVDMTDEEWDRVLN 130
Query: 144 VNAVGPILVIKHMSP-LLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
V + + V G V+ N ++ +G Y A+KA +
Sbjct: 131 VTLTSVMRATRAALRYFRGVDHGG------VIVNNASVLGWRAQ---HSQSHYAAAKAGV 181
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
LT+ ++E + + P
Sbjct: 182 MALTRCSAIEAVEFGVRINAV--SPSIARHKF 211
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 1e-13
Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 37/234 (15%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLD-LKNRFPERLDV 83
V+LV GA++ +G A+ L + G + R+ A L L R P
Sbjct: 45 TVPVALVTGAAKRLGRSIAEGLHAE---GYAVCLHYHRSAAEANALSATLNARRPNSAIT 101
Query: 84 LQLDLTVEST-----------------IEASAKSIKEKYGSLNLLINASGILSIPNVL-- 124
+Q DL+ +T + +G ++L+N + P L
Sbjct: 102 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSF-YPTPLLR 160
Query: 125 ------QPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178
+P + +++ + NA+ P +IK + + + N+
Sbjct: 161 NDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMV 220
Query: 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDT 232
+ + L G+ Y +K AL LT+S ++E + V + PG
Sbjct: 221 DAMTNQP---LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGV--GPGLSVL 269
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 2e-13
Identities = 39/213 (18%), Positives = 83/213 (38%), Gaps = 22/213 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVL 84
+G ++V G + G+G ++L G VIA G L + R + +
Sbjct: 29 EGASAIVSGGAGGLGEATVRRLHAD---GLGVVIADLAAEKGKA----LADELGNRAEFV 81
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
++T E ++ A+ ++ + ++ G ++Q + + + + + ++
Sbjct: 82 STNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTI--DL 139
Query: 145 NAVGPILVIKHMSPLLK--VGGTGIERDVAV-VANLSARVGSIGDNRLGGWHSYRASKAA 201
G V + ++ + ER V A+++ G IG +Y A+KA
Sbjct: 140 YLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQ------TAYAAAKAG 193
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
+ LT + + + V I PGT+ T +
Sbjct: 194 VIGLTIAAARDLSSAGIRVNTI--APGTMKTPI 224
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-13
Identities = 32/219 (14%), Positives = 67/219 (30%), Gaps = 31/219 (14%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQLDL 88
++V G+ A +L E G V + L + QL
Sbjct: 3 TAIVTNVKHFGGMGSALRLSEA---GHTVACHDESFKQKDELEAFAETY------PQLKP 53
Query: 89 TVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ--PETTLNKVEKSSLMLAYEVNA 146
E +++ YG +++L++ + E
Sbjct: 54 MSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGA--------VEALQ 105
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
+ P ++ ++ +K +G + +++ L +Y +++A L
Sbjct: 106 IRPFALVNAVASQMKKRKSG------HIIFITSATPFGPWKELS---TYTSARAGACTLA 156
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEG 245
++S E G PV I P + ++ S F P
Sbjct: 157 NALSKELGEYNIPVFAIG--PNYLHSEDSPYFYPTEPWK 193
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 4e-13
Identities = 43/219 (19%), Positives = 74/219 (33%), Gaps = 50/219 (22%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G LV GA+ GIG +G ++A R + +
Sbjct: 5 SGKTILVTGAASGIGRAALDLFAR---EGASLVAVDREERLLAEAVA---ALEAEAIAVV 58
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAY--- 142
D++ +EA E++G L+ + + +G+ S+L
Sbjct: 59 ADVSDPKAVEAVFAEALEEFGRLHGVAHFAGV----------------AHSALSWNLPLE 102
Query: 143 ------EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLG--GWHS 194
VN G LV + +L+ GG+ + + G LG G
Sbjct: 103 AWEKVLRVNLTGSFLVARKAGEVLEEGGSLV--------LTGSVAG------LGAFGLAH 148
Query: 195 YRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
Y A K + L +++++E RK V + PG + T
Sbjct: 149 YAAGKLGVVGLARTLALELARKGVRVNVL--LPGLIQTP 185
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 4e-13
Identities = 40/220 (18%), Positives = 77/220 (35%), Gaps = 30/220 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQL-----------LEKNDKGCVIATCRNPNGATGLLDLKN 75
+G V+ + GA+RG G A ++ + CV +P+ + + L
Sbjct: 10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVE 69
Query: 76 RFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PETTLNKVE 134
R+ +D + G L++++ +G+ + V
Sbjct: 70 AANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDV- 128
Query: 135 KSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHS 194
++N G + +P + GG G + +S+ G
Sbjct: 129 -------MDINVTGTWNTVMAGAPRIIEGGRG-----GSIILISSAAGMKMQ---PFMIH 173
Query: 195 YRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
Y ASK A+ L ++ + E G+ V + HPG V+T +
Sbjct: 174 YTASKHAVTGLARAFAAELGKHSIRVNSV--HPGPVNTPM 211
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 5e-13
Identities = 52/245 (21%), Positives = 90/245 (36%), Gaps = 38/245 (15%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
V+LV GA+ GIGLE A++L ++ G V R G L D
Sbjct: 21 DSEVALVTGATSGIGLEIARRLGKE---GLRVFVCARGEEGLRTTLKELREAGVEADGRT 77
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML----- 140
D+ IEA ++ E+YG +++L+N +G
Sbjct: 78 CDVRSVPEIEALVAAVVERYGPVDVLVNNAGR----------P------GGGATAELADE 121
Query: 141 ----AYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR 196
E N G V K + + +ER + N+++ G G Y
Sbjct: 122 LWLDVVETNLTGVFRVTKQVLKAGGM----LERGTGRIVNIASTGGKQG-VVHAA--PYS 174
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQK 256
ASK + TK++ +E R V + PG V+T ++ + + + + E + +
Sbjct: 175 ASKHGVVGFTKALGLELARTGITVNAVC--PGFVETPMAASVREHYSDIWEVSTEEAFDR 232
Query: 257 LLNII 261
+ +
Sbjct: 233 ITARV 237
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 5e-13
Identities = 45/245 (18%), Positives = 83/245 (33%), Gaps = 38/245 (15%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
+ + V G S GIGL A+ L + G V R+ + +D +D
Sbjct: 23 RPQTAFVTGVSSGIGLAVARTLAAR---GIAVYGCARDAKNVSAAVDGLRAAGHDVDGSS 79
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLA---- 141
D+T + A+ + E++G + +L+N++G
Sbjct: 80 CDVTSTDEVHAAVAAAVERFGPIGILVNSAGRN----------------GGGETADLDDA 123
Query: 142 -----YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR 196
+ N G V + + + E + N+++ G G Y
Sbjct: 124 LWADVLDTNLTGVFRVTREVLRAGGM----REAGWGRIVNIASTGGKQG-VMYAA--PYT 176
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQK 256
ASK + TKSV E + V + PG V+T ++ + T++ ++
Sbjct: 177 ASKHGVVGFTKSVGFELAKTGITVNAVC--PGYVETPMAERVREGYARHWGVTEQEVHER 234
Query: 257 LLNII 261
I
Sbjct: 235 FNAKI 239
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 8e-13
Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 37/226 (16%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEK------NDKGCVIATCRNPNGATGLLDLKNRFPER 80
+ V LV G +RG G A +L E+ D I T P + L+ E+
Sbjct: 9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEK 68
Query: 81 LDV----LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKS 136
++D+ + + + ++G L++++ +GI L +
Sbjct: 69 TGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICP----LGAHLPVQAFAD- 123
Query: 137 SLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG--------DNR 188
V+ VG I + P L G +++ + G I +
Sbjct: 124 --AFD--VDFVGVINTVHAALPYLTSGA-------SII-TTGSVAGLIAAAQPPGAGGPQ 171
Query: 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
G Y +K ++ T ++ + + I HP V+TD+
Sbjct: 172 GPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVI--HPTNVNTDM 215
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 8e-13
Identities = 45/224 (20%), Positives = 83/224 (37%), Gaps = 28/224 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLD-----LKNRFPER 80
+G V++V G + GIG K+LLE G V+ R D L R
Sbjct: 17 QGQVAIVTGGATGIGKAIVKELLE---LGSNVVIASRKLERLKSAADELQANLPPTKQAR 73
Query: 81 LDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML 140
+ +Q ++ E + KS + +G +N L+N G L P ++ +++
Sbjct: 74 VIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGG----QFLSPAEHISSKGWHAVL- 128
Query: 141 AYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKA 200
E N G + K + G + N+ G A++A
Sbjct: 129 --ETNLTGTFYMCKAVYSSWMKEHGG------SIVNIIV-PTKAG---FPLAVHSGAARA 176
Query: 201 ALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
+ LTKS+++E+ + C+ PG + + + + +
Sbjct: 177 GVYNLTKSLALEWACSGIRINCVA--PGVIYSQTAVENYGSWGQ 218
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 9e-13
Identities = 39/219 (17%), Positives = 78/219 (35%), Gaps = 30/219 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G ++V GA GIG A G V+A R ++ + + +
Sbjct: 30 AGRTAVVTGAGSGIGRAIAHGYARA---GAHVLAWGRTDGVKEVADEIADG-GGSAEAVV 85
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGI-LSIPNVLQPETTLNKVEKSSLMLAYEV 144
DL A+ + +++L+N +GI P +V V
Sbjct: 86 ADLADLEGAANVAEELAA-TRRVDVLVNNAGIIARAPAEEVSLGRWREV--------LTV 136
Query: 145 NAVGPILVIKHMSPLLKVGGTG--IERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
N ++ + + G+G + +++ + G + +Y ASK A+
Sbjct: 137 NLDAAWVLSRSFGTAMLAHGSGRIV--------TIASMLSFQGGRNVA---AYAASKHAV 185
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN 241
LT++++ E+ + V + PG V T + + +
Sbjct: 186 VGLTRALASEWAGRGVGVNALA--PGYVVTANTAALRAD 222
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 9e-13
Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 41/221 (18%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK-----NRFPERL 81
+ V++V G + G+GL K+LL+ G + +LD++ +R
Sbjct: 8 RDAVAVVTGGASGLGLATTKRLLD---AGAQVV----------VLDIRGEDVVADLGDRA 54
Query: 82 DVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML- 140
D+T E+ + + A + E G+L +++N +G L++ SL
Sbjct: 55 RFAAADVTDEAAVAS-ALDLAETMGTLRIVVNCAGT------GNAIRVLSRDGVFSLAAF 107
Query: 141 --AYEVNAVGPILVIK----HMSPLLKVGGTGIERDVAV-VANLSARVGSIGDNRLGGWH 193
++N VG V++ ++ VG ER V + A+++A G IG
Sbjct: 108 RKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQA------ 161
Query: 194 SYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
+Y ASK + +T ++ + + V+ I PG DT L
Sbjct: 162 AYSASKGGVVGMTLPIARDLASHRIRVMTIA--PGLFDTPL 200
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 9e-13
Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 27/223 (12%)
Query: 20 ASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE 79
A+A KG V+++ G + G+GL A++L+ + V+ N G +
Sbjct: 4 AAACRSVKGLVAVITGGASGLGLATAERLVGQGAS-AVLLDLPNSGGEA----QAKKLGN 58
Query: 80 RLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLM 139
D+T E ++ + K K+G +++ +N +GI T N + +
Sbjct: 59 NCVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGI------AVASKTYNLKKGQTHT 112
Query: 140 LAY-----EVNAVGPILVIKHMSPLL--KVGGTGIERDVAV-VANLSARVGSIGDNRLGG 191
L +VN +G VI+ ++ + G +R V + A+++A G +G
Sbjct: 113 LEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQA---- 168
Query: 192 WHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
+Y ASK + +T ++ + V+ I PG T L
Sbjct: 169 --AYSASKGGIVGMTLPIARDLAPIGIRVMTIA--PGLFGTPL 207
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} Length = 278 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-12
Identities = 48/246 (19%), Positives = 85/246 (34%), Gaps = 29/246 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEK------NDKGCVIATCRNPNGATGLLDLKNRFPER 80
G V+ + GA+RG G A +L D IA+ P L + E
Sbjct: 12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVED 71
Query: 81 LDV----LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKS 136
+ Q D+ ++ A+ ++ ++ G L++++ +GI +
Sbjct: 72 IGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAP------MSAGD---DGW 122
Query: 137 SLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLG-GWHSY 195
++ VN G IK P L GTG + +S+ G G G Y
Sbjct: 123 HDVID--VNLTGVYHTIKVAIPTLVKQGTG-----GSIVLISSSAGLAGVGSADPGSVGY 175
Query: 196 RASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQ 255
A+K + L + + + V I HP V+T + K+ +
Sbjct: 176 VAAKHGVVGLMRVYANLLAGQMIRVNSI--HPSGVETPMINNEFTREWLAKMAAATDTPG 233
Query: 256 KLLNII 261
+ N +
Sbjct: 234 AMGNAM 239
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 1e-12
Identities = 42/221 (19%), Positives = 88/221 (39%), Gaps = 28/221 (12%)
Query: 15 AFTSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK 74
+ T + ++ GAS GIG A++ E+ ++ R L L
Sbjct: 3 SMTGGQQMGRGSMKKLVVITGASSGIGEAIARRFSEEGHP--LLLLARR---VERLKALN 57
Query: 75 NRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVE 134
Q+D+T + T + + ++ YG + ++N +G++ +L T +
Sbjct: 58 L---PNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMM----LLGQIDTQ-EAN 109
Query: 135 KSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-GDNRLGGWH 193
+ M ++VN +G + ++ + + R+ + N + SI G
Sbjct: 110 EWQRM--FDVNVLGLLNGMQAVLAPM------KARNCGTIIN----ISSIAGKKTFPDHA 157
Query: 194 SYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
+Y +K A++ ++++V E V+ I P V T+L
Sbjct: 158 AYCGTKFAVHAISENVREEVAASNVRVMTI--APSAVKTEL 196
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-12
Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 32/221 (14%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEK------NDKGCVIATCRNPNGATGLLDLKNRFPER 80
+G V+ + GA+RG G A L + D + + P L R E
Sbjct: 27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEA 86
Query: 81 LDV----LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ--PETTLNKVE 134
L Q+D+ ++A+ + G L++++ + + S L T +
Sbjct: 87 LGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDM- 145
Query: 135 KSSLMLAYEVNAVGPILVIKHMSP-LLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWH 193
+VN G + + P ++ G ++V S+ G G
Sbjct: 146 -------IDVNLNGAWITARVAIPHIMAGKRGG-----SIV-FTSSIGGLRGA---ENIG 189
Query: 194 SYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
+Y ASK L+ L +++++E G + V + P +V T +
Sbjct: 190 NYIASKHGLHGLMRTMALELGPRNIRVNIV--CPSSVATPM 228
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} Length = 280 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-12
Identities = 50/230 (21%), Positives = 86/230 (37%), Gaps = 44/230 (19%)
Query: 27 KGGVSLVQGASRGIG----LEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLD 82
+G V+ + GA+RG G + A + G I C + + PE LD
Sbjct: 14 QGRVAFITGAARGQGRSHAVRLAAE-------GADIIACDICAPVSASVTYAPASPEDLD 66
Query: 83 --------------VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-PE 127
LD+ ++ + E++G L++++ +G+LS V + +
Sbjct: 67 ETARLVEDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTD 126
Query: 128 TTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187
+ V VN G ++ P + G G + +S+ G
Sbjct: 127 EQWDTV--------IGVNLTGTWRTLRATVPAMIEAGNG-----GSIVVVSSSAGLKAT- 172
Query: 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP 237
G Y ASK L LT ++++E G V I HP +V+T + P
Sbjct: 173 --PGNGHYSASKHGLTALTNTLAIELGEYGIRVNSI--HPYSVETPMIEP 218
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 2e-12
Identities = 41/218 (18%), Positives = 88/218 (40%), Gaps = 40/218 (18%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE---RLDV 83
V L+ GAS GIG A++L K ++ R + + +
Sbjct: 3 MDKVILITGASGGIGEGIARELGVAGAK--ILLGARR---QARIEAIATEIRDAGGTALA 57
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL----- 138
LD+T ++ A A++ + +G +++L+N +G++ L+ + +
Sbjct: 58 QVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMP----------LSPLAAVKVDEWER 107
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-GDNRLGGWHSYRA 197
M +VN G + I + P++ + + N +GSI + + Y A
Sbjct: 108 M--IDVNIKGVLWGIGAVLPIM------EAQRSGQIIN----IGSIGALSVVPTAAVYCA 155
Query: 198 SKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS 235
+K A+ ++ + E + ++PG V+++L+
Sbjct: 156 TKFAVRAISDGLRQE----STNIRVTCVNPGVVESELA 189
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* Length = 247 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 3e-12
Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 26/216 (12%)
Query: 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERL 81
+ + G +LV GA++GIG A +L G VI + N GA ++
Sbjct: 1 TERLAGKTALVTGAAQGIGKAIAARLAA---DGATVIVSDINAEGAKAAAA---SIGKKA 54
Query: 82 DVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLA 141
+ D++ +++A I+ G +++L+N + I+ P + V+
Sbjct: 55 RAIAADISDPGSVKALFAEIQALTGGIDILVNNASIV-------PFVAWDDVDLDHWRKI 107
Query: 142 YEVNAVGPILVIKH-MSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKA 200
+VN G +V + + G G V ++++ G +Y A+K
Sbjct: 108 IDVNLTGTFIVTRAGTDQMRAAGKAG------RVISIASNTFFAG-TP--NMAAYVAAKG 158
Query: 201 ALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
+ T++++ E G+ + PG +++D +
Sbjct: 159 GVIGFTRALATELGKYNITANAVT--PGLIESDGVK 192
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 4e-12
Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 35/216 (16%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQLDL 88
+LV G SRGIG A+ L+ +G V RNP A L L DL
Sbjct: 4 KALVTGGSRGIGRAIAEALVA---RGYRVAIASRNPEEAAQSLGAV--------PLPTDL 52
Query: 89 TVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL---NKVEKSSLMLAYEVN 145
+ + K E G L++L++A+ + E + +V ++
Sbjct: 53 EKDD-PKGLVKRALEALGGLHVLVHAAAV--NVRKPALELSYEEWRRV--------LYLH 101
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
L+ + +P + G G V + + +Y +K AL L
Sbjct: 102 LDVAFLLAQAAAPHMAEAGWG------RVLFIGSVTTFTA-GGPVPIPAYTTAKTALLGL 154
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN 241
T++++ E+ R V + PG V+T+ + P ++N
Sbjct: 155 TRALAKEWARLGIRVNLLC--PGYVETEFTLPLRQN 188
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 4e-12
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 42/218 (19%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
V+LV GASRGIG E A L K G V+ T + A + + L
Sbjct: 4 NEKVALVTGASRGIGFEVAHALASK---GATVVGTATSQASAEKFENSMKEKGFKARGLV 60
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML----- 140
L+++ +I+ IK + ++++L+N +GI T + +LM+
Sbjct: 61 LNISDIESIQNFFAEIKAENLAIDILVNNAGI----------T------RDNLMMRMSED 104
Query: 141 ----AYEVNAVGPILVIKH-MSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSY 195
N + K + ++K +R ++ ++ + VGS G N G +Y
Sbjct: 105 EWQSVINTNLSSIFRMSKECVRGMMK------KRWGRII-SIGSVVGSAG-N--PGQTNY 154
Query: 196 RASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
A+KA + +KS++ E + V + PG + TD
Sbjct: 155 CAAKAGVIGFSKSLAYEVASRNITVNVVA--PGFIATD 190
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 8e-12
Identities = 50/211 (23%), Positives = 81/211 (38%), Gaps = 35/211 (16%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
+LV G + G+G A L + G + +LDL R E L ++ D+T
Sbjct: 4 SALVTGGASGLGRAAALALKAR---GYRVV----------VLDL-RREGEDLIYVEGDVT 49
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL---MLAYEVNA 146
E + + +E+ L +++A+G+ E L K L EVN
Sbjct: 50 REEDVRRAVARAQEE-APLFAVVSAAGVG------LAEKILGKEGPHGLESFRRVLEVNL 102
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLS---ARVGSIGDNRLGGWHSYRASKAALN 203
+G V++ + ++ E V+ N + A G IG +Y ASK +
Sbjct: 103 LGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQA------AYAASKGGVV 156
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
LT + E V+ + PG DT L
Sbjct: 157 ALTLPAARELAGWGIRVVTVA--PGLFDTPL 185
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Length = 266 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 9e-12
Identities = 43/219 (19%), Positives = 85/219 (38%), Gaps = 47/219 (21%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
G +LV GA+ GIG A+ + G V + ++ + + V
Sbjct: 26 TGRKALVTGATGGIGEAIARCFHAQ---GAIVGLHGTREDKLK---EIAADLGKDVFVFS 79
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML----- 140
+L+ +I+ A+ + + +++L+N +GI T + L +
Sbjct: 80 ANLSDRKSIKQLAEVAEREMEGIDILVNNAGI----------T------RDGLFVRMQDQ 123
Query: 141 ----AYEVNAVGPILVIKH-MSPLLKV-GGTGIERDVAVVANLSARVGSIGDNRLGGWHS 194
VN + + + +++ G I N+++ VG +G N G +
Sbjct: 124 DWDDVLAVNLTAASTLTRELIHSMMRRRYGRII--------NITSIVGVVG-N--PGQTN 172
Query: 195 YRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
Y A+KA L +K+++ E + V CI PG + +
Sbjct: 173 YCAAKAGLIGFSKALAQEIASRNITVNCIA--PGFIKSA 209
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-11
Identities = 44/235 (18%), Positives = 88/235 (37%), Gaps = 28/235 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLD-LKNRFPE-RLDV 83
KG +LV G++ GIG A L+ +G V+ R + ++ ++P+ L
Sbjct: 9 KGKTALVTGSTAGIGKAIATSLVA---EGANVLINGRREENVNETIKEIRAQYPDAILQP 65
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYE 143
+ DL E + + EKY +++LIN GI + +E
Sbjct: 66 VVADLGTEQGCQD----VIEKYPKVDILINNLGI-------FEPVEYFDIPDEDWFKLFE 114
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
VN + + + + + G R V +++ + Y A+K
Sbjct: 115 VNIMSGVRLTRSYLKKMIERKEG--R----VIFIASEAAIMP---SQEMAHYSATKTMQL 165
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLL 258
L++S++ V I+ PG+ T+ ++ + T E + ++ +
Sbjct: 166 SLSRSLAELTTGTNVTVNTIM--PGSTLTEGVETMLNSLYPNEQLTIEEAEKRFM 218
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Length = 285 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-11
Identities = 51/219 (23%), Positives = 83/219 (37%), Gaps = 44/219 (20%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
+ V+LV GA RGIG E AK L + VI R ++D F
Sbjct: 43 ENKVALVTGAGRGIGREIAKMLAKS---VSHVICISRTQKSCDSVVDEIKSFGYESSGYA 99
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML----- 140
D++ + I I ++ ++++L+N +GI T + +L L
Sbjct: 100 GDVSKKEEISEVINKILTEHKNVDILVNNAGI----------T------RDNLFLRMKND 143
Query: 141 ----AYEVNAVGPILVIKH-MSPLLKV-GGTGIERDVAVVANLSARVGSIGDNRLGGWHS 194
N + + ++ G I N+S+ VG G N G +
Sbjct: 144 EWEDVLRTNLNSLFYITQPISKRMINNRYGRII--------NISSIVGLTG-N--VGQAN 192
Query: 195 YRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
Y +SKA + TKS++ E + V I PG + +D
Sbjct: 193 YSSSKAGVIGFTKSLAKELASRNITVNAIA--PGFISSD 229
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-11
Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 51/230 (22%)
Query: 14 VAFTSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL 73
+ T++ A + LV G +RGIGL A++L K V T R GL
Sbjct: 1 MTATATEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHK--VAVTHRGSGAPKGLF-- 56
Query: 74 KNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKV 133
+++D+T ++ + +++E G + +L++ +G+ +
Sbjct: 57 ---------GVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL----------S----- 92
Query: 134 EKSSLML---------AYEVNAVGPILVIKH-MSPLLKVGGTGIERDVAVVANLSARVGS 183
+ ++ N G V + + + + ++ + + G
Sbjct: 93 -ADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQR------NKFGRMI-FIGSVSGL 144
Query: 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
G G +Y ASKA + + +S++ E + + PG +DTD
Sbjct: 145 WGI---GNQANYAASKAGVIGMARSIARELSKANVTANVVA--PGYIDTD 189
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Length = 270 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-11
Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 44/219 (20%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
V++V GASRGIG A +L + G VI T GA G+ +
Sbjct: 27 DKQVAIVTGASRGIGRAIALELARR---GAMVIGTATTEAGAEGIGAAFKQAGLEGRGAV 83
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML----- 140
L++ + ++A +S +++G+LN+L+N +GI T + L +
Sbjct: 84 LNVNDATAVDALVESTLKEFGALNVLVNNAGI----------T------QDQLAMRMKDD 127
Query: 141 ----AYEVNAVGPILVIKH-MSPLLKV-GGTGIERDVAVVANLSARVGSIGDNRLGGWHS 194
+ N + + + P++K GG + N+++ VGS G N G +
Sbjct: 128 EWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIV--------NITSVVGSAG-N--PGQVN 176
Query: 195 YRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
Y A+KA + +T++++ E G + V C+ PG +DTD
Sbjct: 177 YAAAKAGVAGMTRALAREIGSRGITVNCVA--PGFIDTD 213
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 3e-11
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 47/219 (21%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
+G V+LV GASRGIG A+ L E+ G VI T + +GA + + + +
Sbjct: 8 EGKVALVTGASRGIGKAIAELLAER---GAKVIGTATSESGAQ---AISDYLGDNGKGMA 61
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML----- 140
L++T +IEA K+I +++G +++L+N +GI T + +L++
Sbjct: 62 LNVTNPESIEAVLKAITDEFGGVDILVNNAGI----------T------RDNLLMRMKEE 105
Query: 141 ----AYEVNAVGPILVIKH-MSPLLKV-GGTGIERDVAVVANLSARVGSIGDNRLGGWHS 194
E N + K + ++K G I N+ + VG++G N G +
Sbjct: 106 EWSDIMETNLTSIFRLSKAVLRGMMKKRQGRII--------NVGSVVGTMG-N--AGQAN 154
Query: 195 YRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
Y A+KA + TKS++ E + V + PG ++TD
Sbjct: 155 YAAAKAGVIGFTKSMAREVASRGVTVNTVA--PGFIETD 191
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Length = 264 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-11
Identities = 47/226 (20%), Positives = 83/226 (36%), Gaps = 49/226 (21%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLD-------LKNRFP 78
+ ++LV GA GIG + +L +G V A + A + +
Sbjct: 6 RSALALVTGAGSGIGRAVSVRLAG---EGATVAACDLDRAAAQETVRLLGGPGSKEGPPR 62
Query: 79 ERLDVLQLDLTVESTIEASAKSIKEKYGS-LNLLINASGILSIPNVLQPETTLNKVEKSS 137
Q D++ + ++ + +++++ +GI T +
Sbjct: 63 GNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGI----------T------QDE 106
Query: 138 LML---------AYEVNAVGPILVIKH-MSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187
+L VN G LV + L+ G G + N+S+ VG +G N
Sbjct: 107 FLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRG------SIINISSIVGKVG-N 159
Query: 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
G +Y ASKA + LT++ + E GR +L PG + T
Sbjct: 160 V--GQTNYAASKAGVIGLTQTAARELGRHGIRCNSVL--PGFIATP 201
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 4e-11
Identities = 40/208 (19%), Positives = 73/208 (35%), Gaps = 37/208 (17%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQ 85
+ LV ASRGIG A L + +G V RN E L
Sbjct: 18 RDKGVLVLAASRGIGRAVADVLSQ---EGAEVTICARN--------------EELLKRSG 60
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
V + + EK +++L+ +G P +++ A +
Sbjct: 61 HRYVVCD-LRKDLDLLFEKVKEVDILVLNAG---GP----KAGFFDELTNEDFKEAIDSL 112
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
+ I ++++ P +K G G R + +++ L + +++ AL
Sbjct: 113 FLNMIKIVRNYLPAMKEKGWG--R----IVAITSFSVISPIENLY---TSNSARMALTGF 163
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTD 233
K++S E V C+ PG +T+
Sbjct: 164 LKTLSFEVAPYGITVNCVA--PGWTETE 189
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 5e-11
Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 39/217 (17%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE---RLDV 83
+G V+L+ GAS GIG A+ L + V R L L + ++ V
Sbjct: 6 QGKVALITGASSGIGEATARALAAEGAA--VAIAARR---VEKLRALGDELTAAGAKVHV 60
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL----- 138
L+LD+ ++A+ S E G L++L+N +GI+ L VE +
Sbjct: 61 LELDVADRQGVDAAVASTVEALGGLDILVNNAGIML----------LGPVEDADTTDWTR 110
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-GDNRLGGWHSYRA 197
M + N +G + + + P L R V + SI G + Y+A
Sbjct: 111 M--IDTNLLGLMYMTRAALPHLL-------RSKGTVVQ----MSSIAGRVNVRNAAVYQA 157
Query: 198 SKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
+K +N ++++ E + V+ I PGT DT+L
Sbjct: 158 TKFGVNAFSETLRQEVTERGVRVVVI--EPGTTDTEL 192
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* Length = 248 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 7e-11
Identities = 56/220 (25%), Positives = 98/220 (44%), Gaps = 45/220 (20%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLD-LKNRFPERLDVL 84
+G VSLV G++RGIG A++L G VI T + A + + + N++ + +
Sbjct: 6 QGKVSLVTGSTRGIGRAIAEKLASA---GSTVIITGTSGERAKAVAEEIANKYGVKAHGV 62
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML---- 140
+++L E +I + + I +++L+N +GI T + L L
Sbjct: 63 EMNLLSEESINKAFEEIYNLVDGIDILVNNAGI----------T------RDKLFLRMSL 106
Query: 141 -----AYEVNAVGPILVIKH-MSPLLKV-GGTGIERDVAVVANLSARVGSIGDNRLGGWH 193
+VN G LV ++ + ++K G + N+S+ VG G N G
Sbjct: 107 LDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIV--------NISSVVGFTG-N--VGQV 155
Query: 194 SYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
+Y +KA L TKS++ E + V + PG ++TD
Sbjct: 156 NYSTTKAGLIGFTKSLAKELAPRNVLVNAVA--PGFIETD 193
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 7e-11
Identities = 60/234 (25%), Positives = 90/234 (38%), Gaps = 51/234 (21%)
Query: 10 SIRKVAFTSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69
S SS LV G +RGIGL A+ + DK V T R+ G
Sbjct: 3 SSHHHHHHSSGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDK--VAITYRSGEPPEG 60
Query: 70 LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETT 129
L ++ D+T +E + K I+E +G + +LI +G+ T
Sbjct: 61 FL-----------AVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGV----------T- 98
Query: 130 LNKVEKSSLML---------AYEVNAVGPILVIKH-MSPLLKVGGTGIERDVAVVANLSA 179
K L++ E N G V+K +L+ + VV +S+
Sbjct: 99 -----KDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLR------AKKGRVV-LISS 146
Query: 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
VG +G G +Y ASKA L +S++ E G + + PG VDTD
Sbjct: 147 VVGLLGS---AGQANYAASKAGLVGFARSLARELGSRNITFNVVA--PGFVDTD 195
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Length = 246 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 8e-11
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 45/220 (20%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVL 84
KG V+LV GASRGIG A L ++ G V+ N A ++D + +
Sbjct: 3 KGKVALVTGASRGIGRAIAIDLAKQ---GANVVVNYAGNEQKANEVVDEIKKLGSDAIAV 59
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML---- 140
+ D+ + K + +G +++L+N +G+ T K +L++
Sbjct: 60 RADVANAEDVTNMVKQTVDVFGQVDILVNNAGV----------T------KDNLLMRMKE 103
Query: 141 -----AYEVNAVGPILVIKH-MSPLLKV-GGTGIERDVAVVANLSARVGSIGDNRLGGWH 193
N G L K +++ G + N+++ VG G N G
Sbjct: 104 EEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIV--------NIASVVGVTG-N--PGQA 152
Query: 194 SYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
+Y A+KA + LTK+ + E + V I PG + TD
Sbjct: 153 NYVAAKAGVIGLTKTSAKELASRNITVNAIA--PGFIATD 190
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Length = 269 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 1e-10
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 43/219 (19%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVL 84
++LV GASRGIG A +L G + + A ++ +
Sbjct: 27 TDRIALVTGASRGIGRAIALELAAA---GAKVAVNYASSAGAADEVVAAIAAAGGEAFAV 83
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML---- 140
+ D++ ES +EA ++ E++G L++L+N +GI T + +L+L
Sbjct: 84 KADVSQESEVEALFAAVIERWGRLDVLVNNAGI----------T------RDTLLLRMKR 127
Query: 141 -----AYEVNAVGPILVIKH-MSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHS 194
++N G L + +LK +R ++ N+++ VG +G N G +
Sbjct: 128 DDWQSVLDLNLGGVFLCSRAAAKIMLK------QRSGRII-NIASVVGEMG-N--PGQAN 177
Query: 195 YRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
Y A+KA + LTK+V+ E + V + PG + TD
Sbjct: 178 YSAAKAGVIGLTKTVAKELASRGITVNAVA--PGFIATD 214
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Length = 244 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 1e-10
Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 43/216 (19%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
V +V GASRGIG A L + GC ++ R+ A + + + D
Sbjct: 3 VVVVTGASRGIGKAIALSLGKA---GCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGD 59
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML------- 140
++ E+ +EA K+ + +G++++++N +GI T + +L++
Sbjct: 60 VSKEADVEAMMKTAIDAWGTIDVVVNNAGI----------T------RDTLLIRMKKSQW 103
Query: 141 --AYEVNAVGPILVIKH-MSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRA 197
++N G L + ++K +R ++ N+++ VG IG N G +Y A
Sbjct: 104 DEVIDLNLTGVFLCTQAATKIMMK------KRKGRII-NIASVVGLIG-N--IGQANYAA 153
Query: 198 SKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
+KA + +K+ + E + V + PG + +D
Sbjct: 154 AKAGVIGFSKTAAREGASRNINVNVVC--PGFIASD 187
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-10
Identities = 41/219 (18%), Positives = 79/219 (36%), Gaps = 43/219 (19%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCR-NPNGATGLLDLKNRFPERLDVL 84
++ V G GIG ++L + G V+A C N L+ +
Sbjct: 12 SQRIAYVTGGMGGIGTSICQRLHKD---GFRVVAGCGPNSPRRVKWLEDQKALGFDFYAS 68
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML---- 140
+ ++ + + + +K + G +++L+N +GI T + +
Sbjct: 69 EGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGI----------T------RDVVFRKMTR 112
Query: 141 -----AYEVNAVGPILVIKH-MSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHS 194
+ N V K + +++ G I N+S+ G G G +
Sbjct: 113 EDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRI-------INISSVNGQKGQ---FGQTN 162
Query: 195 YRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
Y +KA ++ T S++ E K V + PG + TD
Sbjct: 163 YSTAKAGIHGFTMSLAQEVATKGVTVNTV--SPGYIGTD 199
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Length = 247 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 2e-10
Identities = 53/219 (24%), Positives = 83/219 (37%), Gaps = 43/219 (19%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVL 84
KG ++V G+SRG+G A +L G V+ + + V
Sbjct: 4 KGKTAIVTGSSRGLGKAIAWKLGNM---GANIVLNGSPASTSLDATAEEFKAAGINVVVA 60
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML---- 140
+ D+ +E K+ + +G +++L+N +GI T + +LML
Sbjct: 61 KGDVKNPEDVENMVKTAMDAFGRIDILVNNAGI----------T------RDTLMLKMSE 104
Query: 141 -----AYEVNAVGPILVIKH-MSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHS 194
N L K +LK I N+++ G IG N G +
Sbjct: 105 KDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKI-------INITSIAGIIG-N--AGQAN 154
Query: 195 YRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
Y ASKA L TKS++ EF K + PG + TD
Sbjct: 155 YAASKAGLIGFTKSIAKEFAAKGIYCNAVA--PGIIKTD 191
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Length = 245 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 2e-10
Identities = 53/217 (24%), Positives = 89/217 (41%), Gaps = 44/217 (20%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLD-LKNRFPERLDVLQL 86
+L+ GASRGIG A +L E G I +N A + + + R + VL
Sbjct: 3 KALITGASRGIGRAIALRLAED---GFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGA 59
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML------ 140
+L A E G L+ L+N +GI T + +L++
Sbjct: 60 NLLEAEAATALVHQAAEVLGGLDTLVNNAGI----------T------RDTLLVRMKDED 103
Query: 141 ---AYEVNAVGPILVIKH-MSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR 196
E N + + ++K R +V N+++ VG +G N G +Y
Sbjct: 104 WEAVLEANLSAVFRTTREAVKLMMK------ARFGRIV-NITSVVGILG-N--PGQANYV 153
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
ASKA L T++V+ E+ ++ V + PG ++T+
Sbjct: 154 ASKAGLIGFTRAVAKEYAQRGITVNAVA--PGFIETE 188
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 2e-10
Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 45/220 (20%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVL 84
+LV GASRGIG A QL E+ G + + A +++ +
Sbjct: 3 MTKSALVTGASRGIGRSIALQLAEE---GYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAI 59
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML---- 140
Q ++ ++A K + ++GSL++L+N +GI T + +L++
Sbjct: 60 QANVADADEVKAMIKEVVSQFGSLDVLVNNAGI----------T------RDNLLMRMKE 103
Query: 141 -----AYEVNAVGPILVIKH-MSPLLKV-GGTGIERDVAVVANLSARVGSIGDNRLGGWH 193
+ N G I+ +L+ G I NLS+ VG++G N G
Sbjct: 104 QEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAII--------NLSSVVGAVG-N--PGQA 152
Query: 194 SYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
+Y A+KA + LTKS + E + V + PG + +D
Sbjct: 153 NYVATKAGVIGLTKSAARELASRGITVNAVA--PGFIVSD 190
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 5e-10
Identities = 37/219 (16%), Positives = 81/219 (36%), Gaps = 43/219 (19%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATC-RNPNGATGLLDLKNRFPERLDVL 84
V+ V G G+G +++L + G V + + + L +
Sbjct: 24 AKRVAFVTGGMGGLGAAISRRLHDA---GMAVAVSHSERNDHVSTWLMHERDAGRDFKAY 80
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML---- 140
+D+ + E A+ + +G +++LIN +GI T + + +
Sbjct: 81 AVDVADFESCERCAEKVLADFGKVDVLINNAGI----------T------RDATFMKMTK 124
Query: 141 -----AYEVNAVGPILVIKH-MSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHS 194
+ V K ++ +++ I N+ + GS G G +
Sbjct: 125 GDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRI-------VNIGSVNGSRGA---FGQAN 174
Query: 195 YRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
Y ++KA ++ TK++++E ++ V + PG + T
Sbjct: 175 YASAKAGIHGFTKTLALETAKRGITVNTV--SPGYLATA 211
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 7e-10
Identities = 45/229 (19%), Positives = 75/229 (32%), Gaps = 45/229 (19%)
Query: 22 ASVKWKGGVSLVQGASRGIG----LEFAKQ---------LLEKNDKGCVIATCRNPNGAT 68
S + K +LV G GIG + +A++ E+ D V A G
Sbjct: 43 GSGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEE-CGRK 101
Query: 69 GLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPET 128
+L L DL+ ES + +E G L++L +G
Sbjct: 102 AVL------------LPGDLSDESFARSLVHKAREALGGLDILALVAGKQ------TAIP 143
Query: 129 TLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188
+ + + VN + + PLL G + I S+
Sbjct: 144 EIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASII--------TTSSIQAYQPSPH 195
Query: 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP 237
L Y A+KAA+ ++ ++ + K V + PG + T L
Sbjct: 196 L---LDYAATKAAILNYSRGLAKQVAEKGIRVNIV--APGPIWTALQIS 239
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Length = 317 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 7e-10
Identities = 46/228 (20%), Positives = 87/228 (38%), Gaps = 47/228 (20%)
Query: 27 KGGVSLVQGASRGIG----LEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERL 81
+G V+ + GA+RG G + A+ G ++A + PE L
Sbjct: 45 QGKVAFITGAARGQGRTHAVRLAQD-------GADIVAIDLCRQQPNLDYAQGS--PEEL 95
Query: 82 D--------------VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQ-P 126
Q D+ ++++A ++G +++L++ GI + V+
Sbjct: 96 KETVRLVEEQGRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLT 155
Query: 127 ETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186
+ + + + N +G + + P + G G V +S+ VG G
Sbjct: 156 DQQWSDI--------LQTNLIGAWHACRAVLPSMIERGQG-----GSVIFVSSTVGLRGA 202
Query: 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
G Y ASK + L S++ E GR V + +PG V+T++
Sbjct: 203 ---PGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSV--NPGAVNTEM 245
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 1e-09
Identities = 49/217 (22%), Positives = 86/217 (39%), Gaps = 47/217 (21%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G SL+ GAS GIG A+ L + K VI + N L N + +
Sbjct: 13 TGKTSLITGASSGIGSAIARLLHKLGSK--VIISGSNEEKLK---SLGNALKDNYTIEVC 67
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML------ 140
+L + + K +L++L+ +GI T +L +
Sbjct: 68 NLANKEECSN----LISKTSNLDILVCNAGI----------T------SDTLAIRMKDQD 107
Query: 141 ---AYEVNAVGPILVIKH-MSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYR 196
++N ++ + + +++ +R ++ N+S+ VG G N G +Y
Sbjct: 108 FDKVIDINLKANFILNREAIKKMIQ------KRYGRII-NISSIVGIAG-N--PGQANYC 157
Query: 197 ASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
ASKA L +TKS+S E + V + PG + +D
Sbjct: 158 ASKAGLIGMTKSLSYEVATRGITVNAV--APGFIKSD 192
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} Length = 281 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-09
Identities = 40/227 (17%), Positives = 79/227 (34%), Gaps = 46/227 (20%)
Query: 27 KGGVSLVQGASRGIG----LEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERL 81
+G +L+ G +RG+G + A+ G + R N L + L
Sbjct: 9 EGKTALITGGARGMGRSHAVALAEA-------GADIAICDRCENSDVVGYPLAT--ADDL 59
Query: 82 D--------------VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPE 127
++D+ + +E+ ++ G +++ I +GI
Sbjct: 60 AETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGIS-------TI 112
Query: 128 TTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187
L +VE + N G I ++P + G +V +S+ +G +
Sbjct: 113 ALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYG-----RIV-TVSSMLGHSAN- 165
Query: 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
SY +SK + LTK + + V + PG ++T +
Sbjct: 166 --FAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAV--APGNIETPM 208
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 3e-09
Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 41/220 (18%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC--VIATCRNPNGATGLLDLKNRFPERLDVL 84
+L+ ++G+G + ++LL KG + + + + ERL +
Sbjct: 6 FVRHALITAGTKGLGKQVTEKLLA---KGYSVTVTYHSDTTAMETMKETYKDVEERLQFV 62
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAY-- 142
Q D+T + + + +G ++ LIN +G V + ++ Y
Sbjct: 63 QADVTKKEDLHKIVEEAMSHFGKIDFLINNAG--------------PYVFERKKLVDYEE 108
Query: 143 -------EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR--VGSIGDNRLGGWH 193
+ N ++K + P+++ G + N + + G
Sbjct: 109 DEWNEMIQGNLTAVFHLLKLVVPVMRKQNFG------RIINYGFQGADSAPG-W--IYRS 159
Query: 194 SYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
++ A+K L LTK+V+ E + PG + +
Sbjct: 160 AFAAAKVGLVSLTKTVAYEEAEYGITANMVC--PGDIIGE 197
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 4e-09
Identities = 41/218 (18%), Positives = 79/218 (36%), Gaps = 48/218 (22%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLD-LKNRFPERLDVL 84
K L+ GA+ GIG + + +G ++A + + +
Sbjct: 4 KDKAVLITGAAHGIGRATLELFAK---EGARLVACDIEEGPLREAAEAVGAH------PV 54
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML---- 140
+D+ +++E G L+ +++ +GI + +
Sbjct: 55 VMDVADPASVERGFAEALAHLGRLDGVVHYAGIT----------------RDNFHWKMPL 98
Query: 141 -----AYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSY 195
VN G LV K S ++ G + ++RV +G N G +Y
Sbjct: 99 EDWELVLRVNLTGSFLVAKAASEAMREKNPG------SIVLTASRVY-LG-NL--GQANY 148
Query: 196 RASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
AS A + LT+++++E GR V + PG ++T
Sbjct: 149 AASMAGVVGLTRTLALELGRWGIRVNTLA--PGFIETR 184
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 4e-09
Identities = 54/225 (24%), Positives = 79/225 (35%), Gaps = 44/225 (19%)
Query: 22 ASVKWKGGVSLVQGASRGIG----LEFAKQ--------LLEKNDKGCVIATCRNPNGATG 69
S K KG L+ G GIG + FAK+ L E+ D G
Sbjct: 41 GSEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEK-EGVKC 99
Query: 70 LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETT 129
+L L DL+ E + + + GSLN+L+N P+
Sbjct: 100 VL------------LPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQ------QYPQQG 141
Query: 130 LNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRL 189
L + L + +N V K LK G I N ++ V G+ L
Sbjct: 142 LEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVII--------NTASIVAYEGNETL 193
Query: 190 GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL 234
Y A+K A+ T+S+S +K V + PG + T L
Sbjct: 194 ---IDYSATKGAIVAFTRSLSQSLVQKGIRVNGVA--PGPIWTPL 233
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A Length = 454 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 46/231 (19%)
Query: 17 TSSASASVKW----KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD 72
+ ++ W G V++V GA+RGIG A+ G + A L
Sbjct: 198 AADSTPPADWDKPLDGKVAVVTGAARGIGATIAEVFAR---DGATVVAIDVDGAAEDLKR 254
Query: 73 LKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG-SLNLLINASGILSIPNVLQPETTLN 131
+ ++ L LD+T + ++ + E +G +++L+N +GI T
Sbjct: 255 VADKVGGT--ALTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGI----------T--- 299
Query: 132 KVEKSSLML---------AYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182
+ L+ VN + P + + L+ G + V LS+ G
Sbjct: 300 ---RDKLLANMDEKRWDAVIAVNLLAPQRLTEG---LVG---NGTIGEGGRVIGLSSMAG 350
Query: 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233
G NR G +Y +KA + L ++++ K + + PG ++T
Sbjct: 351 IAG-NR--GQTNYATTKAGMIGLAEALAPVLADKGITINAVA--PGFIETK 396
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Length = 322 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 7e-04
Identities = 40/214 (18%), Positives = 71/214 (33%), Gaps = 52/214 (24%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEK------NDKGCVIATCRNPNGATGLLDLKNRFPER 80
G V +V GA GIG A + ND G + G+
Sbjct: 26 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAA----------- 74
Query: 81 LDVLQLDLTVE----------------STIEASAKSIK---EKYGSLNLLINASGILSIP 121
V+ + + +A I+ E +G L++L+N +GI+
Sbjct: 75 ------QSVVDEITAAGGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVR-- 126
Query: 122 NVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181
+ + + V+ G ++H + + + + N S+
Sbjct: 127 -----DRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGA 181
Query: 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGR 215
G G + G +Y A+KA + LT + E GR
Sbjct: 182 GLQG-SV--GQGNYSAAKAGIATLTLVGAAEMGR 212
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 282 | |||
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 100.0 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 100.0 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 100.0 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 100.0 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 100.0 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 100.0 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 100.0 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 100.0 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 100.0 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 100.0 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 100.0 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 100.0 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 100.0 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 100.0 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 100.0 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 100.0 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 100.0 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 100.0 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 100.0 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 100.0 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 100.0 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 100.0 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 100.0 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 100.0 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 100.0 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 100.0 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 100.0 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 100.0 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 100.0 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 100.0 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 100.0 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 100.0 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 100.0 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 100.0 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 100.0 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 100.0 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 100.0 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 100.0 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 100.0 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 100.0 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 100.0 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 100.0 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 100.0 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 100.0 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 100.0 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 100.0 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 100.0 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 100.0 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 100.0 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 100.0 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 100.0 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 100.0 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 100.0 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 100.0 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 100.0 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 100.0 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 100.0 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 100.0 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 100.0 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 100.0 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 100.0 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 100.0 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 100.0 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 100.0 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 100.0 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 100.0 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 100.0 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 100.0 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 100.0 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 100.0 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 100.0 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 100.0 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 100.0 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 100.0 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 100.0 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 100.0 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 100.0 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 100.0 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 100.0 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 100.0 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 100.0 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 100.0 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 100.0 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 100.0 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 100.0 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 100.0 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 100.0 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 100.0 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 100.0 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 100.0 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 100.0 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 100.0 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 100.0 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 100.0 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 100.0 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 100.0 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 100.0 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 100.0 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 100.0 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 100.0 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 100.0 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 100.0 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 100.0 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 100.0 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 100.0 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 100.0 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 100.0 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 100.0 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 100.0 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 100.0 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 100.0 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 100.0 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 100.0 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 100.0 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 100.0 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 100.0 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 100.0 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 100.0 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 100.0 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 100.0 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 100.0 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 100.0 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 100.0 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 100.0 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 100.0 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 100.0 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 100.0 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 100.0 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 100.0 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 100.0 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 100.0 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 100.0 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 100.0 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 100.0 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 100.0 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 100.0 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 100.0 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 100.0 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 100.0 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 100.0 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 100.0 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 100.0 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 100.0 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 100.0 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 100.0 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 100.0 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 100.0 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 100.0 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 100.0 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 100.0 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 100.0 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 100.0 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 100.0 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 100.0 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 100.0 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 100.0 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 100.0 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 100.0 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 100.0 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 100.0 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 100.0 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 100.0 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 100.0 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 100.0 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 100.0 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 100.0 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 100.0 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 100.0 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 100.0 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 100.0 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 100.0 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 100.0 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 100.0 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 100.0 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 100.0 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 100.0 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 100.0 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.98 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.98 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.97 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.97 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.97 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.97 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.97 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.96 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.95 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.95 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.95 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.94 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.93 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.93 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.9 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.89 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.89 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.89 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.89 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.89 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.88 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.88 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.88 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.88 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.88 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.88 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.88 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.88 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.88 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.87 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.87 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.86 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.86 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.86 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.86 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.86 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.85 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.85 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.85 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.85 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.85 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.85 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.85 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.85 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.85 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.85 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.85 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.84 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.84 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.84 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.84 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.84 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.84 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.84 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.83 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.83 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.83 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.82 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.82 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.82 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.81 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.81 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.81 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.81 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.81 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.81 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.8 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.8 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.8 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.8 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.79 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.79 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.79 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.79 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.79 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.78 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.75 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.75 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.74 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.74 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.74 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.73 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.72 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.72 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.71 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.71 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.71 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.71 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.68 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.67 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.67 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.66 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.61 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.6 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.58 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.58 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.58 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.56 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.52 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.47 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.45 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.43 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 99.36 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.31 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 99.11 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.98 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 98.86 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 98.85 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.79 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.58 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.5 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.45 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 98.43 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 98.42 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 98.42 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.34 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 98.3 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.29 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.29 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 98.27 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.27 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.22 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.2 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 98.14 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 98.12 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 98.12 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 98.05 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 98.05 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 98.02 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 98.01 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.99 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.96 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.88 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.87 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.81 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.8 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.8 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.77 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.76 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.76 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.76 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 97.74 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.69 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.68 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.65 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.65 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.65 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 97.63 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.53 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.53 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.53 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.53 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 97.52 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.52 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.51 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.46 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.46 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.42 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.42 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.38 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.38 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.38 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.33 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.33 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.32 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 97.25 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 97.19 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.15 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 97.12 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.1 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 97.07 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.07 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 97.06 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.01 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.99 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.98 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.96 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.92 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.91 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 96.88 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.85 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.84 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.75 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 96.74 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.71 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.65 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.64 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.63 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.61 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.61 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.6 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.56 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.56 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.56 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 96.52 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 96.52 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.51 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.51 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.48 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.46 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 96.43 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.42 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 96.39 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 96.37 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.3 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 96.3 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.26 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.24 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.23 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 96.23 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.21 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.16 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 96.14 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.13 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.1 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.09 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.07 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 96.07 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.02 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.02 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 95.96 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 95.91 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.83 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 95.82 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 95.76 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 95.69 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 95.68 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 95.61 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.61 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.6 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.59 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.55 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.54 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 95.48 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 95.44 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 95.38 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.36 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 95.33 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 95.31 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.3 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.27 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 95.24 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 95.18 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 95.06 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.04 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 94.9 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 94.85 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 94.85 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 94.84 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 94.76 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 94.75 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 94.58 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 94.54 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 94.52 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 94.49 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 94.45 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 94.44 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 94.39 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 94.37 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 94.37 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 94.27 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 94.25 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 94.25 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 94.25 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 94.24 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 94.16 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 94.15 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 94.13 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 94.12 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 94.07 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 94.07 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 93.97 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 93.97 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 93.9 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 93.83 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 93.8 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 93.8 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 93.79 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 93.75 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 93.75 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 93.72 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 93.63 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 93.58 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 93.57 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 93.54 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 93.43 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 93.4 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 93.38 |
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-52 Score=355.25 Aligned_cols=239 Identities=21% Similarity=0.276 Sum_probs=218.3
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+||+||++|||||++|||+++|+.|+++|++ |++++|++++++++.+++++.+.++.+++||++|+++++++++++.
T Consensus 2 y~sL~gKvalVTGas~GIG~aiA~~la~~Ga~--Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~ 79 (254)
T 4fn4_A 2 YQSLKNKVVIVTGAGSGIGRAIAKKFALNDSI--VVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTF 79 (254)
T ss_dssp CGGGTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE--EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999998 9999999999888887777778899999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++||+||+||||||+.. +..++.+.+.++|++.+++|+.++|+++|++.|.|++++.| +|||+||..+
T Consensus 80 ~~~G~iDiLVNNAGi~~------~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G------~IVnisS~~g 147 (254)
T 4fn4_A 80 ETYSRIDVLCNNAGIMD------GVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKG------VIVNTASIAG 147 (254)
T ss_dssp HHHSCCCEEEECCCCCC------TTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGG
T ss_pred HHcCCCCEEEECCcccC------CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc------EEEEEechhh
Confidence 99999999999999864 24678889999999999999999999999999999988775 9999999999
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC------------CCCCCCCCh
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN------------VPEGKLFTK 250 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~------------~~~~~~~~~ 250 (282)
..+ .++...|++||+++.+|+|+|+.|++++ |||||+|+||+++|++....... .+..+..+|
T Consensus 148 ~~~---~~~~~~Y~asKaal~~ltr~lA~ela~~--gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~R~g~p 222 (254)
T 4fn4_A 148 IRG---GFAGAPYTVAKHGLIGLTRSIAAHYGDQ--GIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLAEP 222 (254)
T ss_dssp TCS---SSSCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHTTCCCCBCH
T ss_pred cCC---CCCChHHHHHHHHHHHHHHHHHHHhhhh--CeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCCCCCCCcCH
Confidence 887 6777899999999999999999999999 99999999999999986533221 234677899
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+|..+.+++++..+++||+.+.+|||+.
T Consensus 223 ediA~~v~fLaSd~a~~iTG~~i~VDGG~t 252 (254)
T 4fn4_A 223 EDIANVIVFLASDEASFVNGDAVVVDGGLT 252 (254)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHhCchhcCCcCCEEEeCCCcc
Confidence 999999999999999999999999999973
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-52 Score=352.06 Aligned_cols=240 Identities=20% Similarity=0.261 Sum_probs=219.0
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..++++||++|||||++|||+++|+.|+++|++ |++++|+++.+++..+.+.+.+.++.+++||++|+++++++++++
T Consensus 3 ~~f~L~gKvalVTGas~GIG~aia~~la~~Ga~--Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 80 (255)
T 4g81_D 3 ALFDLTGKTALVTGSARGLGFAYAEGLAAAGAR--VILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKL 80 (255)
T ss_dssp CTTCCTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 346899999999999999999999999999998 999999999888877777777889999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++||+||+||||||+.. ..++.+.+.++|++.+++|+.|+|+++|++.|.|.+++.+ ++|||+||..
T Consensus 81 ~~~~G~iDiLVNNAG~~~-------~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~-----G~IVnisS~~ 148 (255)
T 4g81_D 81 DAEGIHVDILINNAGIQY-------RKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSG-----GKIINIGSLT 148 (255)
T ss_dssp HHTTCCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-----EEEEEECCGG
T ss_pred HHHCCCCcEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCC-----CEEEEEeehh
Confidence 999999999999999975 6788899999999999999999999999999999764322 4999999999
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCChH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTKE 251 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~~~ 251 (282)
+..+ .++...|++||+++.+|+|+++.|++++ |||||+|+||+++|++.+.. ....|..+..+|+
T Consensus 149 ~~~~---~~~~~~Y~asKaal~~ltr~lA~ela~~--gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R~g~pe 223 (255)
T 4g81_D 149 SQAA---RPTVAPYTAAKGGIKMLTCSMAAEWAQF--NIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPSQRWGRPE 223 (255)
T ss_dssp GTSB---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHSTTCSCBCGG
T ss_pred hcCC---CCCchhHHHHHHHHHHHHHHHHHHhccc--CeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCCCCCCcCHH
Confidence 9877 6788999999999999999999999999 99999999999999987532 2346678888999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+|..+.+++++..+++||+.+.+|||+.
T Consensus 224 diA~~v~fL~S~~a~~iTG~~i~VDGG~~ 252 (255)
T 4g81_D 224 ELIGTAIFLSSKASDYINGQIIYVDGGWL 252 (255)
T ss_dssp GGHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHhCchhCCCcCCEEEECCCeE
Confidence 99999999999999999999999999985
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-50 Score=335.38 Aligned_cols=232 Identities=19% Similarity=0.253 Sum_probs=207.0
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
+++|+||++|||||++|||+++|+.|+++|++ |++++|+.. ++..+.+.+.+.++.+++||++|+++++++++
T Consensus 4 ~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~--Vvi~~r~~~--~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~--- 76 (247)
T 4hp8_A 4 PFSLEGRKALVTGANTGLGQAIAVGLAAAGAE--VVCAARRAP--DETLDIIAKDGGNASALLIDFADPLAAKDSFT--- 76 (247)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESSCC--HHHHHHHHHTTCCEEEEECCTTSTTTTTTSST---
T ss_pred CcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCE--EEEEeCCcH--HHHHHHHHHhCCcEEEEEccCCCHHHHHHHHH---
Confidence 57899999999999999999999999999998 999999865 34455556667899999999999999887764
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+++||+||||||+.. ..++.+.+.++|++.+++|+.|+|+++|++.|.|.+++.+ ++|||+||..+
T Consensus 77 --~g~iDiLVNNAGi~~-------~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~-----G~IVnisS~~~ 142 (247)
T 4hp8_A 77 --DAGFDILVNNAGIIR-------RADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRS-----GKVVNIASLLS 142 (247)
T ss_dssp --TTCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-----EEEEEECCGGG
T ss_pred --hCCCCEEEECCCCCC-------CCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCC-----cEEEEEechhh
Confidence 489999999999985 6778899999999999999999999999999999776432 49999999999
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~~~~ 252 (282)
..+ .++...|++||+++.+|+|+++.|++++ +||||+|+||+++|++.+.. ....|..+..+|+|
T Consensus 143 ~~g---~~~~~~Y~asKaav~~ltr~lA~Ela~~--gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~PlgR~g~pee 217 (247)
T 4hp8_A 143 FQG---GIRVPSYTAAKHGVAGLTKLLANEWAAK--GINVNAIAPGYIETNNTEALRADAARNKAILERIPAGRWGHSED 217 (247)
T ss_dssp TSC---CSSCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCTTSSCBCTHH
T ss_pred CCC---CCCChHHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEeeCCCCCcchhhcccCHHHHHHHHhCCCCCCCcCHHH
Confidence 887 6778899999999999999999999999 99999999999999987532 34567788889999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|..+.+++++..+++||+.+.+|||+.
T Consensus 218 iA~~v~fLaSd~a~~iTG~~i~VDGG~~ 245 (247)
T 4hp8_A 218 IAGAAVFLSSAAADYVHGAILNVDGGWL 245 (247)
T ss_dssp HHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHhCchhcCCcCCeEEECcccc
Confidence 9999999999999999999999999985
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-49 Score=335.05 Aligned_cols=234 Identities=22% Similarity=0.284 Sum_probs=204.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+|+||++|||||++|||+++|++|+++|++ |++++|+.+..+.. +.+.+.+.++.+++||++|+++++++++++.+
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~--Vv~~~r~~~~~~~~-~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~ 79 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERAI--PVVFARHAPDGAFL-DALAQRQPRATYLPVELQDDAQCRDAVAQTIA 79 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSCCCHHHH-HHHHHHCTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE--EEEEECCcccHHHH-HHHHhcCCCEEEEEeecCCHHHHHHHHHHHHH
Confidence 6799999999999999999999999999998 99999998875433 33344467899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+||+||+||||||+.. .. ..+.+.++|++.+++|+.++|.+++++.|.|++++ | +|||+||..+.
T Consensus 80 ~~G~iDiLVNnAGi~~-------~~-~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G------~IVnisS~~~~ 144 (258)
T 4gkb_A 80 TFGRLDGLVNNAGVND-------GI-GLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATR-G------AIVNISSKTAV 144 (258)
T ss_dssp HHSCCCEEEECCCCCC-------CC-CTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C------EEEEECCTHHH
T ss_pred HhCCCCEEEECCCCCC-------CC-CccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-C------eEEEEeehhhc
Confidence 9999999999999864 22 23667899999999999999999999999997654 3 99999999998
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------------cCCCC-CCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------------RNVPE-GKLF 248 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------------~~~~~-~~~~ 248 (282)
.+ .++...|++||+++.+|+|+++.|++++ |||||+|+||+++|++.+... ...|. .+..
T Consensus 145 ~~---~~~~~~Y~asKaav~~ltr~lA~ela~~--gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plg~R~g 219 (258)
T 4gkb_A 145 TG---QGNTSGYCASKGAQLALTREWAVALREH--GVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPLGRRFT 219 (258)
T ss_dssp HC---CSSCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECSBCCSCC-----------CHHHHHHTTCTTTTSCB
T ss_pred cC---CCCchHHHHHHHHHHHHHHHHHHHhccc--CeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCCCCCCc
Confidence 77 6778899999999999999999999999 899999999999999876432 12344 3677
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+|+|..+.+++++..+++||+.+.+|||+.
T Consensus 220 ~peeiA~~v~fLaS~~a~~iTG~~i~VDGG~T 251 (258)
T 4gkb_A 220 TPDEIADTAVFLLSPRASHTTGEWLFVDGGYT 251 (258)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHhCchhcCccCCeEEECCCcc
Confidence 99999999999999999999999999999974
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-49 Score=336.65 Aligned_cols=230 Identities=22% Similarity=0.289 Sum_probs=205.0
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.|+||++|||||++|||+++|++|+++|++ |++++|+.+.+++..+.+ +.++.+++||++|+++++++++++.++
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~--V~i~~r~~~~l~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGAR--VFITGRRKDVLDAAIAEI---GGGAVGIQADSANLAELDRLYEKVKAE 100 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHc---CCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 389999999999999999999999999998 999999988776654443 568899999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
||+||+||||||... ..++.+.+.++|++.+++|+.++|++++++.|.|+++ ++||++||..+..
T Consensus 101 ~G~iDiLVNNAG~~~-------~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~--------G~IInisS~~~~~ 165 (273)
T 4fgs_A 101 AGRIDVLFVNAGGGS-------MLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARG--------SSVVLTGSTAGST 165 (273)
T ss_dssp HSCEEEEEECCCCCC-------CCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE--------EEEEEECCGGGGS
T ss_pred cCCCCEEEECCCCCC-------CCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhC--------CeEEEEeehhhcc
Confidence 999999999999875 6778889999999999999999999999999999753 3899999999987
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc---------------cCCCCCCCCC
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ---------------RNVPEGKLFT 249 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~---------------~~~~~~~~~~ 249 (282)
+ .+....|++||+++.+|+|+++.|++++ |||||+|+||+++|++..... ...|..+..+
T Consensus 166 ~---~~~~~~Y~asKaav~~ltr~lA~Ela~~--gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~ 240 (273)
T 4fgs_A 166 G---TPAFSVYAASKAALRSFARNWILDLKDR--GIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMGRVGR 240 (273)
T ss_dssp C---CTTCHHHHHHHHHHHHHHHHHHHHTTTS--CEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTSSCBC
T ss_pred C---CCCchHHHHHHHHHHHHHHHHHHHhccc--CeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCCCCcC
Confidence 7 6788899999999999999999999999 999999999999999865432 2356678889
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
|+|+|..+.+++++..+++||+.+.+|||.
T Consensus 241 peeiA~~v~FLaSd~a~~iTG~~i~VDGG~ 270 (273)
T 4fgs_A 241 AEEVAAAALFLASDDSSFVTGAELFVDGGS 270 (273)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHHHHHHhCchhcCccCCeEeECcCh
Confidence 999999999999999999999999999986
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=332.94 Aligned_cols=235 Identities=19% Similarity=0.293 Sum_probs=207.0
Q ss_pred cccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHH
Q 023441 19 SASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 19 ~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~ 98 (282)
.+...|+|+||++|||||++|||+++|++|+++|++ |++++|+.++. ..+..++++|++|++++++++
T Consensus 2 Mm~dl~~L~GK~alVTGas~GIG~aia~~la~~Ga~--V~~~~r~~~~~----------~~~~~~~~~Dv~~~~~v~~~~ 69 (261)
T 4h15_A 2 MMIEFLNLRGKRALITAGTKGAGAATVSLFLELGAQ--VLTTARARPEG----------LPEELFVEADLTTKEGCAIVA 69 (261)
T ss_dssp CCCCCCCCTTCEEEESCCSSHHHHHHHHHHHHTTCE--EEEEESSCCTT----------SCTTTEEECCTTSHHHHHHHH
T ss_pred cchhccCCCCCEEEEeccCcHHHHHHHHHHHHcCCE--EEEEECCchhC----------CCcEEEEEcCCCCHHHHHHHH
Confidence 345678999999999999999999999999999998 99999976432 123457899999999999999
Q ss_pred HHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 99 KSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
+++.++||+||+||||||+... ...++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++|
T Consensus 70 ~~~~~~~G~iDilVnnAG~~~~-----~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G------~Iv~is 138 (261)
T 4h15_A 70 EATRQRLGGVDVIVHMLGGSSA-----AGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSG------VVVHVT 138 (261)
T ss_dssp HHHHHHTSSCSEEEECCCCCCC-----CSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEEC
T ss_pred HHHHHHcCCCCEEEECCCCCcc-----CCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCc------eEEEEE
Confidence 9999999999999999998641 13467888999999999999999999999999999988775 999999
Q ss_pred ccccccCCCCCC-CcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------------
Q 023441 179 ARVGSIGDNRLG-GWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF------------------- 238 (282)
Q Consensus 179 s~~~~~~~~~~~-~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~------------------- 238 (282)
|..+..+ .+ +...|++||+++.+|+++++.|++++ |||||+|+||+++|++....
T Consensus 139 S~~~~~~---~~~~~~~Y~asKaal~~lt~~lA~Ela~~--gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (261)
T 4h15_A 139 SIQRVLP---LPESTTAYAAAKAALSTYSKAMSKEVSPK--GVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKII 213 (261)
T ss_dssp CGGGTSC---CTTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ehhhccC---CCCccHHHHHHHHHHHHHHHHHHHHhhhh--CeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHH
Confidence 9998876 33 56789999999999999999999999 89999999999999975321
Q ss_pred ---ccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 239 ---QRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 239 ---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
....|..+..+|+|+|+.+.+++++..+++||+.+.+|||+++
T Consensus 214 ~~~~~~~PlgR~g~peevA~~v~fLaS~~a~~itG~~i~VDGG~v~ 259 (261)
T 4h15_A 214 MDGLGGIPLGRPAKPEEVANLIAFLASDRAASITGAEYTIDGGTVP 259 (261)
T ss_dssp HHHTTCCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCSC
T ss_pred HHHhcCCCCCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCcCcc
Confidence 2345777888999999999999999999999999999999975
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=325.20 Aligned_cols=222 Identities=23% Similarity=0.324 Sum_probs=194.9
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++||++|||||++|||+++|++|+++|++ |++++|+.+.+++. .+.++..+++|++|+++++++++ ++
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~--Vv~~~~~~~~~~~~------~~~~~~~~~~Dv~~~~~v~~~~~----~~ 76 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAE--VVALGLDADGVHAP------RHPRIRREELDITDSQRLQRLFE----AL 76 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSTTSTTSC------CCTTEEEEECCTTCHHHHHHHHH----HC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHhhh------hcCCeEEEEecCCCHHHHHHHHH----hc
Confidence 48999999999999999999999999998 99999998776532 23589999999999999887764 57
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
|+||+||||||+.. +..+.+.++|++.+++|+.++|+++|++.|.|++++ ++|||+||..+..+
T Consensus 77 g~iDiLVNNAGi~~---------~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~-------G~IVnisS~~~~~~ 140 (242)
T 4b79_A 77 PRLDVLVNNAGISR---------DREEYDLATFERVLRLNLSAAMLASQLARPLLAQRG-------GSILNIASMYSTFG 140 (242)
T ss_dssp SCCSEEEECCCCCC---------GGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-------EEEEEECCGGGTSC
T ss_pred CCCCEEEECCCCCC---------CcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-------CeEEEEeeccccCC
Confidence 99999999999852 456778899999999999999999999999997643 39999999999887
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChHHHHH
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKEFSVQ 255 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~~a~ 255 (282)
.++...|++||+++.+|+|+++.|++++ +||||+|+||+++|++.+... ...|..+..+|+|+|.
T Consensus 141 ---~~~~~~Y~asKaav~~ltr~lA~Ela~~--gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~PlgR~g~peeiA~ 215 (242)
T 4b79_A 141 ---SADRPAYSASKGAIVQLTRSLACEYAAE--RIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLARWGEAPEVAS 215 (242)
T ss_dssp ---CSSCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCC-----CCCHHHHHHHHHTCTTCSCBCHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHhhhc--CeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCCCCCCcCHHHHHH
Confidence 6778899999999999999999999999 999999999999999876432 2466778889999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCccc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+.+++++..+++||+.+.+|||++
T Consensus 216 ~v~fLaSd~a~~iTG~~l~VDGG~l 240 (242)
T 4b79_A 216 AAAFLCGPGASFVTGAVLAVDGGYL 240 (242)
T ss_dssp HHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHhCchhcCccCceEEECccHh
Confidence 9999999999999999999999986
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-47 Score=320.31 Aligned_cols=224 Identities=18% Similarity=0.218 Sum_probs=200.1
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
+|++|||||++|||+++|++|+++|++ |++++|+++..+++.+. +.++.+++||++|+++++++++++.++||+
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~--V~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~ 75 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDK--VCFIDIDEKRSADFAKE----RPNLFYFHGDVADPLTLKKFVEYAMEKLQR 75 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHTT----CTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHh----cCCEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 599999999999999999999999998 99999998765543332 457899999999999999999999999999
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
||+||||||+.. ..++.+.+.++|++.+++|+.++|.+++.+.|.|.+++ | +||++||..+..+
T Consensus 76 iDiLVNNAG~~~-------~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-G------~IInisS~~~~~~-- 139 (247)
T 3ged_A 76 IDVLVNNACRGS-------KGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK-G------RIINIASTRAFQS-- 139 (247)
T ss_dssp CCEEEECCCCCC-------CCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-C------EEEEECCGGGTSC--
T ss_pred CCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-C------cEEEEeecccccC--
Confidence 999999999875 67888999999999999999999999999999998765 3 9999999999877
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----cCCCCCCCCChHHHHHHHHHHHhh
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----RNVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
.++...|++||+++.+|+|++|.|+++ +||||+|+||+++|++.+.+. ...|..+..+|+|+|..+.+++++
T Consensus 140 -~~~~~~Y~asKaal~~ltk~lA~ela~---~IrVN~I~PG~i~t~~~~~~~~~~~~~~Pl~R~g~pediA~~v~fL~s~ 215 (247)
T 3ged_A 140 -EPDSEAYASAKGGIVALTHALAMSLGP---DVLVNCIAPGWINVTEQQEFTQEDCAAIPAGKVGTPKDISNMVLFLCQQ 215 (247)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHTT---TSEEEEEEECSBCCCC---CCHHHHHTSTTSSCBCHHHHHHHHHHHHHC
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHCC---CCEEEEEecCcCCCCCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhC
Confidence 678889999999999999999999985 699999999999999876543 356778889999999999999974
Q ss_pred cCCCCCCceeecCCcc
Q 023441 264 IKSHDNGKFFAWDGQE 279 (282)
Q Consensus 264 ~~~~~~g~~~~~d~~~ 279 (282)
+++||+.+.+|||+
T Consensus 216 --~~iTG~~i~VDGG~ 229 (247)
T 3ged_A 216 --DFITGETIIVDGGM 229 (247)
T ss_dssp --SSCCSCEEEESTTG
T ss_pred --CCCCCCeEEECcCH
Confidence 69999999999985
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-47 Score=322.63 Aligned_cols=240 Identities=13% Similarity=0.214 Sum_probs=210.8
Q ss_pred cccccCcEEEEecCCC--chhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC-CceeEEEeeCCChhHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASR--GIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP-ERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 23 ~~~~~gk~vlItGas~--giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~-~~v~~~~~Dls~~~~~~~~~~ 99 (282)
.|+++||++|||||++ |||+++|++|+++|++ |++++|+++.++++.+++.+.+ .++.+++||++|+++++++++
T Consensus 1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~--Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 78 (256)
T 4fs3_A 1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAK--LVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFE 78 (256)
T ss_dssp CCCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCE--EEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHH
Confidence 4789999999999875 9999999999999998 9999999988877666665544 489999999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.++||++|+||||+|+....+ ...+..+.+.++|...+++|+.+.+.+.+.+.+.+.++ ++||++||
T Consensus 79 ~~~~~~G~iD~lvnnAg~~~~~~---~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~--------G~IVnisS 147 (256)
T 4fs3_A 79 QIGKDVGNIDGVYHSIAFANMED---LRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEG--------GSIVATTY 147 (256)
T ss_dssp HHHHHHCCCSEEEECCCCCCGGG---GTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTC--------EEEEEEEC
T ss_pred HHHHHhCCCCEEEeccccccccc---cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------CEEEEEec
Confidence 99999999999999999874111 12345677788999999999999999999999877543 39999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCC
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFT 249 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~ 249 (282)
..+..+ .+++..|++||+++.+|+|+|+.|++++ |||||+|+||+++|++.+.. ....|..+..+
T Consensus 148 ~~~~~~---~~~~~~Y~asKaal~~ltr~lA~Ela~~--gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R~g~ 222 (256)
T 4fs3_A 148 LGGEFA---VQNYNVMGVAKASLEANVKYLALDLGPD--NIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPLKRNVD 222 (256)
T ss_dssp GGGTSC---CTTTHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSSCCC
T ss_pred cccccC---cccchhhHHHHHHHHHHHHHHHHHhCcc--CeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCCCCCCcC
Confidence 999877 6788999999999999999999999999 99999999999999987643 22456778889
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+|+|+.+.+++++..+++||+.+.+|||+.
T Consensus 223 peevA~~v~fL~Sd~a~~iTG~~i~VDGG~~ 253 (256)
T 4fs3_A 223 QVEVGKTAAYLLSDLSSGVTGENIHVDSGFH 253 (256)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHHhCchhcCccCCEEEECcCHH
Confidence 9999999999999999999999999999974
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-45 Score=312.61 Aligned_cols=241 Identities=20% Similarity=0.278 Sum_probs=209.4
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC-------------CCcccccccccccCCCceeEEEeeC
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN-------------PNGATGLLDLKNRFPERLDVLQLDL 88 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~-------------~~~~~~~~~~~~~~~~~v~~~~~Dl 88 (282)
...+++||++|||||++|||+++|++|+++|++ |++++|+ .+.+++..+.+...+.++.++++|+
T Consensus 9 ~~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 86 (280)
T 3pgx_A 9 QAGSLQGRVAFITGAARGQGRSHAVRLAAEGAD--IIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDV 86 (280)
T ss_dssp --CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred cccccCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 445789999999999999999999999999998 9999884 3344444555556677999999999
Q ss_pred CChhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCc
Q 023441 89 TVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIE 168 (282)
Q Consensus 89 s~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~ 168 (282)
+|+++++++++++.++++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.+
T Consensus 87 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~-- 157 (280)
T 3pgx_A 87 RDDAALRELVADGMEQFGRLDVVVANAGVLS-------WGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNG-- 157 (280)
T ss_dssp TCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSC--
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC--
Confidence 9999999999999999999999999999975 5677788899999999999999999999999999876422
Q ss_pred cceeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-----------
Q 023441 169 RDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP----------- 237 (282)
Q Consensus 169 ~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~----------- 237 (282)
++||++||..+..+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+.
T Consensus 158 ---g~iv~isS~~~~~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~ 229 (280)
T 3pgx_A 158 ---GSIVVVSSSAGLKA---TPGNGHYSASKHGLTALTNTLAIELGEY--GIRVNSIHPYSVETPMIEPEAMMEIFARHP 229 (280)
T ss_dssp ---EEEEEECCGGGTSC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCSTTCCHHHHHHHHHHCG
T ss_pred ---CEEEEEcchhhccC---CCCchhHHHHHHHHHHHHHHHHHHhhhc--CeEEEEEeeCcccCcccchhhhhhhhhcCc
Confidence 49999999998876 6778899999999999999999999998 8999999999999998753
Q ss_pred -------cccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 238 -------FQRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 238 -------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
.....+ .+..+|+|+|+.+++++++...+++|+.+.+|||+..|
T Consensus 230 ~~~~~~~~~~~~~-~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~~~ 280 (280)
T 3pgx_A 230 SFVHSFPPMPVQP-NGFMTADEVADVVAWLAGDGSGTLTGTQIPVDKGALKY 280 (280)
T ss_dssp GGGGGSCCBTTBC-SSCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTTGGGC
T ss_pred hhhhhhhhcccCC-CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccCC
Confidence 011112 25679999999999999998899999999999999988
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=310.22 Aligned_cols=245 Identities=20% Similarity=0.254 Sum_probs=217.5
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
...++++||++|||||++|||+++|++|+++|++ |++++|+.+..+.+.+.+...+.++.++++|++|++++++++++
T Consensus 25 ~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~ 102 (276)
T 3r1i_A 25 LDLFDLSGKRALITGASTGIGKKVALAYAEAGAQ--VAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQ 102 (276)
T ss_dssp GGGGCCTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 3457899999999999999999999999999988 99999999888777766666677999999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.+++|++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|.+++.+ ++||++||.
T Consensus 103 ~~~~~g~iD~lvnnAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~-----g~iv~isS~ 170 (276)
T 3r1i_A 103 MTGELGGIDIAVCNAGIVS-------VQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLG-----GTIITTASM 170 (276)
T ss_dssp HHHHHSCCSEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC-----EEEEEECCG
T ss_pred HHHHcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----cEEEEECch
Confidence 9999999999999999875 5567788899999999999999999999999999876542 499999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------ccCCCCCCCCChHHH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------QRNVPEGKLFTKEFS 253 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------~~~~~~~~~~~~~~~ 253 (282)
.+..+.. .+....|++||++++.|+++++.|++++ +|+||+|+||+++|++.+.. ....+..+..+|+|+
T Consensus 171 ~~~~~~~-~~~~~~Y~asKaa~~~l~~~la~e~~~~--gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~p~~r~~~pedv 247 (276)
T 3r1i_A 171 SGHIINI-PQQVSHYCTSKAAVVHLTKAMAVELAPH--QIRVNSVSPGYIRTELVEPLADYHALWEPKIPLGRMGRPEEL 247 (276)
T ss_dssp GGTSCCC-SSCCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCSTTTGGGGGGHHHHGGGSTTSSCBCGGGS
T ss_pred HhcccCC-CCCcchHHHHHHHHHHHHHHHHHHHhhc--CcEEEEEeeCCCcCCccccchHHHHHHHhcCCCCCCcCHHHH
Confidence 8876532 2356789999999999999999999998 89999999999999987643 234556778899999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
|+.+++++++....++|+.+.+|||+..|
T Consensus 248 A~~v~fL~s~~~~~itG~~i~vdGG~~~~ 276 (276)
T 3r1i_A 248 TGLYLYLASAASSYMTGSDIVIDGGYTCP 276 (276)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESTTTTCC
T ss_pred HHHHHHHcCccccCccCcEEEECcCccCC
Confidence 99999999998899999999999999877
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-45 Score=311.46 Aligned_cols=239 Identities=19% Similarity=0.227 Sum_probs=211.9
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc-CCC-ceeEEEeeCCChhHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR-FPE-RLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~-~~~-~v~~~~~Dls~~~~~~~~~~ 99 (282)
.+++++||++|||||++|||+++|++|+++|++ |++++|+.++.+...+.+.. .+. ++.++++|++|+++++++++
T Consensus 2 ~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 79 (265)
T 3lf2_A 2 KPYDLSEAVAVVTGGSSGIGLATVELLLEAGAA--VAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAE 79 (265)
T ss_dssp -CCCCTTCEEEEETCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CccCcCCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHH
Confidence 357899999999999999999999999999988 99999998887765554433 334 59999999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.++++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||
T Consensus 80 ~~~~~~g~id~lvnnAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g------~iv~isS 146 (265)
T 3lf2_A 80 ACERTLGCASILVNNAGQGR-------VSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADA------AIVCVNS 146 (265)
T ss_dssp HHHHHHCSCSEEEECCCCCC-------CBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTE------EEEEEEE
T ss_pred HHHHHcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCe------EEEEECC
Confidence 99999999999999999875 5667788899999999999999999999999999887654 9999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-------------------
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR------------------- 240 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~------------------- 240 (282)
..+..+ .++...|++||+++++|+++++.|++++ +|+||+|+||+++|++.+....
T Consensus 147 ~~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (265)
T 3lf2_A 147 LLASQP---EPHMVATSAARAGVKNLVRSMAFEFAPK--GVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARN 221 (265)
T ss_dssp GGGTSC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHH
T ss_pred cccCCC---CCCchhhHHHHHHHHHHHHHHHHHhccc--CeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhc
Confidence 998877 6778999999999999999999999998 8999999999999987543221
Q ss_pred -CCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 241 -NVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 241 -~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
..|..+..+|+|+|+.+++++++...+++|+.+.+|||+.
T Consensus 222 ~~~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~ 262 (265)
T 3lf2_A 222 KQIPLGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGGLS 262 (265)
T ss_dssp TTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSEEEEESSSCC
T ss_pred cCCCcCCCcCHHHHHHHHHHHhCchhcCcCCCEEEECCCCc
Confidence 1566778899999999999999988999999999999974
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-45 Score=308.81 Aligned_cols=238 Identities=21% Similarity=0.313 Sum_probs=213.6
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.+++++||++|||||++|||+++|++|+++|++ |++++|+.+..++..+.+...+.++.++++|++|+++++++++++
T Consensus 6 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 83 (256)
T 3gaf_A 6 SPFHLNDAVAIVTGAAAGIGRAIAGTFAKAGAS--VVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAA 83 (256)
T ss_dssp CTTCCTTCEEEECSCSSHHHHHHHHHHHHHTCE--EEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 457899999999999999999999999999998 999999998877776666666789999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++++++|+||||||... ..+. +.+.++|++.+++|+.+++++++++.|.|++++.| +||++||..
T Consensus 84 ~~~~g~id~lv~nAg~~~-------~~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g------~iv~isS~~ 149 (256)
T 3gaf_A 84 LDQFGKITVLVNNAGGGG-------PKPF-DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGG------AILNISSMA 149 (256)
T ss_dssp HHHHSCCCEEEECCCCCC-------CCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE------EEEEECCGG
T ss_pred HHHcCCCCEEEECCCCCC-------CCCC-CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------EEEEEcCHH
Confidence 999999999999999875 3444 67889999999999999999999999999887654 999999999
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCChHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFTKEF 252 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~~~~ 252 (282)
+..+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+.. ....+..+..+|+|
T Consensus 150 ~~~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~~~d 224 (256)
T 3gaf_A 150 GENT---NVRMASYGSSKAAVNHLTRNIAFDVGPM--GIRVNAIAPGAIKTDALATVLTPEIERAMLKHTPLGRLGEAQD 224 (256)
T ss_dssp GTCC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCCHHHHHHCCHHHHHHHHTTCTTSSCBCHHH
T ss_pred HcCC---CCCchHHHHHHHHHHHHHHHHHHHHhhh--CcEEEEEEEccccCchhhhccCHHHHHHHHhcCCCCCCCCHHH
Confidence 8876 6778899999999999999999999998 89999999999999975422 23456677889999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+.+++++++....++|+.+.+|||+.
T Consensus 225 va~~~~~L~s~~~~~itG~~i~vdgG~~ 252 (256)
T 3gaf_A 225 IANAALFLCSPAAAWISGQVLTVSGGGV 252 (256)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred HHHHHHHHcCCcccCccCCEEEECCCcc
Confidence 9999999999888999999999999975
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=309.04 Aligned_cols=239 Identities=18% Similarity=0.260 Sum_probs=207.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC-------------CCcccccccccccCCCceeEEEeeCCC
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN-------------PNGATGLLDLKNRFPERLDVLQLDLTV 90 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~-------------~~~~~~~~~~~~~~~~~v~~~~~Dls~ 90 (282)
.+++||++|||||++|||+++|++|+++|++ |++++|+ .+.+++..+.+...+.++.++.+|++|
T Consensus 7 ~~l~~k~~lVTGas~GIG~a~a~~la~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 84 (277)
T 3tsc_A 7 GKLEGRVAFITGAARGQGRAHAVRMAAEGAD--IIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRD 84 (277)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred cccCCCEEEEECCccHHHHHHHHHHHHcCCE--EEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 4688999999999999999999999999998 9999884 333333444445556789999999999
Q ss_pred hhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccc
Q 023441 91 ESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERD 170 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~ 170 (282)
+++++++++++.++++++|+||||||+.. ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.+
T Consensus 85 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~---- 153 (277)
T 3tsc_A 85 FDRLRKVVDDGVAALGRLDIIVANAGVAA-------PQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRG---- 153 (277)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC----
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCC----
Confidence 99999999999999999999999999975 5567788899999999999999999999999999876522
Q ss_pred eeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-------------
Q 023441 171 VAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------------- 237 (282)
Q Consensus 171 ~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~------------- 237 (282)
++||++||..+..+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+.
T Consensus 154 -g~iv~isS~~~~~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~ 227 (277)
T 3tsc_A 154 -GSIILISSAAGMKM---QPFMIHYTASKHAVTGLARAFAAELGKH--SIRVNSVHPGPVNTPMGSGDMVTAVGQAMETN 227 (277)
T ss_dssp -EEEEEECCGGGTSC---CSSCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESSBSSGGGSHHHHHHHHHHHHTC
T ss_pred -CEEEEEccHhhCCC---CCCchhhHHHHHHHHHHHHHHHHHhCcc--CeEEEEEEeCCCcCCcccchhhhhhhhccccc
Confidence 49999999998876 6777899999999999999999999998 8999999999999998542
Q ss_pred ------cccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 238 ------FQRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 238 ------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
+....+ .+..+|+|+|+.+++++++...+++|+.+.+|||+..|
T Consensus 228 ~~~~~~~~~~~p-~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~~ 277 (277)
T 3tsc_A 228 PQLSHVLTPFLP-DWVAEPEDIADTVCWLASDESRKVTAAQIPVDQGSTQY 277 (277)
T ss_dssp GGGTTTTCCSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred HHHHHHhhhccC-CCCCCHHHHHHHHHHHhCccccCCcCCEEeeCCCcccC
Confidence 011122 35679999999999999998999999999999999887
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=310.73 Aligned_cols=241 Identities=22% Similarity=0.268 Sum_probs=209.1
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.|+++||++|||||++|||+++|++|+++|++ |++++|+.++.++..+.+...+.++.++++|++|+++++++++++.
T Consensus 23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 100 (283)
T 3v8b_A 23 MMNQPSPVALITGAGSGIGRATALALAADGVT--VGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLV 100 (283)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 47789999999999999999999999999987 9999999988877766666667799999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+++|++|+||||||+.. ...++.+.+.++|++.+++|+.+++++++++.|.|++++.| +||++||..+
T Consensus 101 ~~~g~iD~lVnnAg~~~------~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g------~Iv~isS~~~ 168 (283)
T 3v8b_A 101 LKFGHLDIVVANAGING------VWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGG------AIVVVSSING 168 (283)
T ss_dssp HHHSCCCEEEECCCCCC------CBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCSBT
T ss_pred HHhCCCCEEEECCCCCC------CCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc------eEEEEcChhh
Confidence 99999999999999864 23567788899999999999999999999999999877654 9999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---------------CCCC--C
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR---------------NVPE--G 245 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---------------~~~~--~ 245 (282)
... .+.++...|++||++++.|+++++.|++++ +|+||+|+||+++|++...... ..+. .
T Consensus 169 ~~~-~~~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 245 (283)
T 3v8b_A 169 TRT-FTTPGATAYTATKAAQVAIVQQLALELGKH--HIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITDG 245 (283)
T ss_dssp TTB-CCSTTCHHHHHHHHHHHHHHHHHHHHTTTT--TEEEEEEEECSBSSCTTCCTTBCCHHHHSCCCBCTTCSCGGGTT
T ss_pred ccC-CCCCCchHHHHHHHHHHHHHHHHHHHhCcc--CcEEEEEEeCCCcCCcccccccccchhhhhhhhhhhhcCccccC
Confidence 752 125677899999999999999999999988 8999999999999998764311 1122 5
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+..+|+|+|+.+++++++....++|+.+.+|||+.
T Consensus 246 r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~ 280 (283)
T 3v8b_A 246 QPGRSEDVAELIRFLVSERARHVTGSPVWIDGGQG 280 (283)
T ss_dssp CCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHH
T ss_pred CCCCHHHHHHHHHHHcCccccCCcCCEEEECcCcc
Confidence 56789999999999999988999999999999974
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=304.81 Aligned_cols=236 Identities=26% Similarity=0.384 Sum_probs=210.7
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..|+++||++|||||++|||+++|++|+++|++ |++.+|+++..+...+.+. .+..++++|++|+++++++++++
T Consensus 3 ~~~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~ 77 (248)
T 3op4_A 3 QFMNLEGKVALVTGASRGIGKAIAELLAERGAK--VIGTATSESGAQAISDYLG---DNGKGMALNVTNPESIEAVLKAI 77 (248)
T ss_dssp CTTCCTTCEEEESSCSSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHhc---ccceEEEEeCCCHHHHHHHHHHH
Confidence 357899999999999999999999999999998 9999999877766554442 36789999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..
T Consensus 78 ~~~~g~iD~lv~nAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g------~iv~isS~~ 144 (248)
T 3op4_A 78 TDEFGGVDILVNNAGITR-------DNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQG------RIINVGSVV 144 (248)
T ss_dssp HHHHCCCSEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCHH
T ss_pred HHHcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC------EEEEEcchh
Confidence 999999999999999875 5667788899999999999999999999999999876654 999999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFS 253 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~ 253 (282)
+..+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+... ...+..+..+|+++
T Consensus 145 ~~~~---~~~~~~Y~asK~a~~~l~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~p~~r~~~p~dv 219 (248)
T 3op4_A 145 GTMG---NAGQANYAAAKAGVIGFTKSMAREVASR--GVTVNTVAPGFIETDMTKALNDEQRTATLAQVPAGRLGDPREI 219 (248)
T ss_dssp HHHC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBSSTTTTTSCHHHHHHHHHTCTTCSCBCHHHH
T ss_pred hcCC---CCCChHHHHHHHHHHHHHHHHHHHHHHh--CeEEEEEeeCCCCCchhhhcCHHHHHHHHhcCCCCCCcCHHHH
Confidence 8877 6778899999999999999999999998 899999999999999876432 23556778899999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+.+.+++++....++|+.+.+|||+.
T Consensus 220 a~~v~~L~s~~~~~itG~~i~vdgG~~ 246 (248)
T 3op4_A 220 ASAVAFLASPEAAYITGETLHVNGGMY 246 (248)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred HHHHHHHcCCccCCccCcEEEECCCee
Confidence 999999999888999999999999975
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=307.06 Aligned_cols=238 Identities=21% Similarity=0.250 Sum_probs=205.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC----------------CcccccccccccCCCceeEEEee
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP----------------NGATGLLDLKNRFPERLDVLQLD 87 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~----------------~~~~~~~~~~~~~~~~v~~~~~D 87 (282)
.+++||++|||||++|||+++|++|+++|++ |++++|+. +.+++..+.+...+.++.++++|
T Consensus 7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 84 (286)
T 3uve_A 7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGAD--IIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVD 84 (286)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCe--EEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcC
Confidence 4688999999999999999999999999998 99998873 22333344444556789999999
Q ss_pred CCChhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCC
Q 023441 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGI 167 (282)
Q Consensus 88 ls~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~ 167 (282)
++|+++++++++++.+++|++|+||||||+.. ...++.+.+.++|++.+++|+.+++++++++.|.|.+++.+
T Consensus 85 v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~------~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~- 157 (286)
T 3uve_A 85 VRDYDALKAAVDSGVEQLGRLDIIVANAGIGN------GGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRG- 157 (286)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC------CCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC-
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCcccC------CCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC-
Confidence 99999999999999999999999999999875 22347788899999999999999999999999999876522
Q ss_pred ccceeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc----------
Q 023441 168 ERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP---------- 237 (282)
Q Consensus 168 ~~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~---------- 237 (282)
++||++||..+..+ .++...|++||+++++|+++++.|++++ +|+||+|+||+++|++.+.
T Consensus 158 ----g~iv~isS~~~~~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~ 228 (286)
T 3uve_A 158 ----GSIILTSSVGGLKA---YPHTGHYVAAKHGVVGLMRAFGVELGQH--MIRVNSVHPTHVKTPMLHNEGTFKMFRPD 228 (286)
T ss_dssp ----EEEEEECCGGGTSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESSBSSTTTSSHHHHHHHCTT
T ss_pred ----cEEEEECchhhccC---CCCccHHHHHHHHHHHHHHHHHHHhccc--CeEEEEEecCcccCCcccccchhhhcccc
Confidence 49999999998877 6778899999999999999999999998 8999999999999998752
Q ss_pred --------------cccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 238 --------------FQRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 238 --------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.....+ .+..+|+|+|+.+++++++...+++|+.+.+|||+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~p-~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~ 284 (286)
T 3uve_A 229 LENPGPDDMAPICQMFHTLP-IPWVEPIDISNAVLFFASDEARYITGVTLPIDAGSC 284 (286)
T ss_dssp SSSCCHHHHHHHHHTTCSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ccccchhhHHHHHHhhhccC-CCcCCHHHHHHHHHHHcCccccCCcCCEEeECCccc
Confidence 111223 566799999999999999988999999999999974
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=307.28 Aligned_cols=238 Identities=21% Similarity=0.314 Sum_probs=211.9
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC-CceeEEEeeCCChhHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP-ERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~-~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.++++||++|||||++|||+++|++|+++|++ |++++|+.++.++..+.+.+.+ .++.++++|++|+++++++++++
T Consensus 5 m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (262)
T 3pk0_A 5 MFDLQGRSVVVTGGTKGIGRGIATVFARAGAN--VAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRA 82 (262)
T ss_dssp TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999987 9999999988777665555544 58999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++++++|+||||||... ..++.+.+.++|++.+++|+.+++++++++.|.|.+++.| +||++||..
T Consensus 83 ~~~~g~id~lvnnAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g------~iv~isS~~ 149 (262)
T 3pk0_A 83 VEEFGGIDVVCANAGVFP-------DAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSG------RVVLTSSIT 149 (262)
T ss_dssp HHHHSCCSEEEECCCCCC-------CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSC------EEEEECCSB
T ss_pred HHHhCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc------EEEEEechh
Confidence 999999999999999875 5667788899999999999999999999999999887665 999999988
Q ss_pred cc-cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--------cccCCCCCCCCChHH
Q 023441 182 GS-IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--------FQRNVPEGKLFTKEF 252 (282)
Q Consensus 182 ~~-~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--------~~~~~~~~~~~~~~~ 252 (282)
+. .+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++... +....+..+..+|++
T Consensus 150 ~~~~~---~~~~~~Y~asK~a~~~l~~~la~e~~~~--gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~p~d 224 (262)
T 3pk0_A 150 GPITG---YPGWSHYGATKAAQLGFMRTAAIELAPH--KITVNAIMPGNIMTEGLLENGEEYIASMARSIPAGALGTPED 224 (262)
T ss_dssp TTTBC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECSBCCHHHHTTCHHHHHHHHTTSTTSSCBCHHH
T ss_pred hccCC---CCCChhhHHHHHHHHHHHHHHHHHHHhh--CcEEEEEEeCcCcCccccccCHHHHHHHHhcCCCCCCcCHHH
Confidence 75 44 5677899999999999999999999998 8999999999999986432 223456677889999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+.+.+++++...+++|+.+.+|||+.
T Consensus 225 va~~v~~L~s~~~~~itG~~i~vdGG~~ 252 (262)
T 3pk0_A 225 IGHLAAFLATKEAGYITGQAIAVDGGQV 252 (262)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHHHHhCccccCCcCCEEEECCCee
Confidence 9999999999988999999999999875
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-44 Score=303.17 Aligned_cols=237 Identities=20% Similarity=0.251 Sum_probs=209.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||++|||||++|||+++|++|+++|++ |++.+|+.++.+...+.+...+.++.++++|++|+++++++++++.+
T Consensus 2 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (257)
T 3imf_A 2 NAMKEKVVIITGGSSGMGKGMATRFAKEGAR--VVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDE 79 (257)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999988 99999999888777766666677999999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhc-CCCCCccceeEEEEeecccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKV-GGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~-~~~g~~~~~~~iv~~ss~~~ 182 (282)
++|++|+||||||... ..+..+.+.++|++.+++|+.+++++++++.|.|.+ ++.| +||++||..+
T Consensus 80 ~~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g------~iv~isS~~~ 146 (257)
T 3imf_A 80 KFGRIDILINNAAGNF-------ICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKG------NIINMVATYA 146 (257)
T ss_dssp HHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC------EEEEECCGGG
T ss_pred HcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCc------EEEEECchhh
Confidence 9999999999999874 566778889999999999999999999999999844 4444 9999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhc-cCCCCeEEEEEecccccCCCCcc-----------cccCCCCCCCCCh
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFG-RKKDPVICILLHPGTVDTDLSRP-----------FQRNVPEGKLFTK 250 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~-~~~~~i~v~~i~Pg~v~t~~~~~-----------~~~~~~~~~~~~~ 250 (282)
..+ .++...|++||+++++|+++++.|++ ++ +|+||+|+||+++|++... +....+..+..+|
T Consensus 147 ~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~~--gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~~r~~~p 221 (257)
T 3imf_A 147 WDA---GPGVIHSAAAKAGVLAMTKTLAVEWGRKY--GIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVPLGRLGTP 221 (257)
T ss_dssp GSC---CTTCHHHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEEEECCBSSCCCC-------CCSHHHHTTSTTCSCBCH
T ss_pred ccC---CCCcHHHHHHHHHHHHHHHHHHHHhcccc--CeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcCCCCCCcCH
Confidence 876 67788999999999999999999997 66 8999999999999986432 1223455677899
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++|+.+++++++....++|+.+.+|||+.
T Consensus 222 edvA~~v~~L~s~~~~~itG~~i~vdGG~~ 251 (257)
T 3imf_A 222 EEIAGLAYYLCSDEAAYINGTCMTMDGGQH 251 (257)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHHcCchhcCccCCEEEECCCcc
Confidence 999999999999988999999999999975
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-44 Score=303.78 Aligned_cols=235 Identities=21% Similarity=0.322 Sum_probs=210.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEe-ecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT-CRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~-~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
+||++|||||++|||+++|++|+++|++ |++. +|+.+..++..+.+...+.++.++++|++|+++++++++++.+++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~--vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYN--IVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETF 80 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 6899999999999999999999999998 7775 888877777666666667799999999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
+++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||..+..+
T Consensus 81 g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g------~iv~isS~~~~~~ 147 (258)
T 3oid_A 81 GRLDVFVNNAASGV-------LRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGG------HIVSISSLGSIRY 147 (258)
T ss_dssp SCCCEEEECCCCCC-------CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCE------EEEEEEEGGGTSB
T ss_pred CCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------EEEEECchhhCCC
Confidence 99999999999874 5667788899999999999999999999999999987654 9999999988876
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------CCCCCCCCChHHHHH
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------NVPEGKLFTKEFSVQ 255 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------~~~~~~~~~~~~~a~ 255 (282)
.++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+.... ..+..+..+|+|+|+
T Consensus 148 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~ 222 (258)
T 3oid_A 148 ---LENYTTVGVSKAALEALTRYLAVELSPK--QIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKDMVD 222 (258)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHTGGG--TEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHHCTTSSCBCHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHhhc--CcEEEEEeeCCCcChhhhhcccCHHHHHHHHhcCCCCCCcCHHHHHH
Confidence 6778899999999999999999999988 8999999999999998765432 245677889999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCcccC
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
.+++++++....++|+.+.+|||+..
T Consensus 223 ~v~~L~s~~~~~itG~~i~vdGG~~~ 248 (258)
T 3oid_A 223 TVEFLVSSKADMIRGQTIIVDGGRSL 248 (258)
T ss_dssp HHHHHTSSTTTTCCSCEEEESTTGGG
T ss_pred HHHHHhCcccCCccCCEEEECCCccC
Confidence 99999998889999999999999753
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=308.06 Aligned_cols=238 Identities=20% Similarity=0.258 Sum_probs=205.1
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC------------CcccccccccccCCCceeEEEeeCCCh
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP------------NGATGLLDLKNRFPERLDVLQLDLTVE 91 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~------------~~~~~~~~~~~~~~~~v~~~~~Dls~~ 91 (282)
.+++||++|||||++|||+++|++|+++|++ |++++|+. +.++...+.+...+.++.++++|++|+
T Consensus 24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 101 (299)
T 3t7c_A 24 GKVEGKVAFITGAARGQGRSHAITLAREGAD--IIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDF 101 (299)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCH
Confidence 4688999999999999999999999999998 99988873 233334444455577899999999999
Q ss_pred hHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccce
Q 023441 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDV 171 (282)
Q Consensus 92 ~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~ 171 (282)
++++++++++.+++|++|+||||||... ...++.+.+.++|++.+++|+.+++++++.+.|.|.+++.+
T Consensus 102 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~------~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~----- 170 (299)
T 3t7c_A 102 DAMQAAVDDGVTQLGRLDIVLANAALAS------EGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRG----- 170 (299)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCC------CCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSC-----
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCCC------CCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-----
Confidence 9999999999999999999999999875 22336778899999999999999999999999998776422
Q ss_pred eEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------
Q 023441 172 AVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF------------- 238 (282)
Q Consensus 172 ~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~------------- 238 (282)
++||++||..+..+ .++...|++||+++++|+++++.|+++. +|+||+|+||+++|++....
T Consensus 171 g~Iv~isS~~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~ 245 (299)
T 3t7c_A 171 GSIVFTSSIGGLRG---AENIGNYIASKHGLHGLMRTMALELGPR--NIRVNIVCPSSVATPMLLNEPTYRMFRPDLENP 245 (299)
T ss_dssp EEEEEECCGGGTSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSC
T ss_pred cEEEEECChhhccC---CCCcchHHHHHHHHHHHHHHHHHHhccc--CcEEEEEecCCccCccccccchhhhhhhhhccc
Confidence 49999999998877 6778899999999999999999999998 89999999999999986531
Q ss_pred -----------ccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 239 -----------QRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 239 -----------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
....+ .+..+|+|+|+.+++++++...+++|+.+.+|||+.
T Consensus 246 ~~~~~~~~~~~~~~~p-~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~ 297 (299)
T 3t7c_A 246 TVEDFQVASRQMHVLP-IPYVEPADISNAILFLVSDDARYITGVSLPVDGGAL 297 (299)
T ss_dssp CHHHHHHHHHHHSSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred hhhHHHHHhhhhcccC-cCCCCHHHHHHHHHHHhCcccccCcCCEEeeCCCcc
Confidence 01122 456799999999999999988999999999999974
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=308.67 Aligned_cols=238 Identities=17% Similarity=0.282 Sum_probs=214.8
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++++||++|||||++|||+++|++|+++|++ |++.+|+.++.++..+.+...+.++.++++|++|+++++++++++.
T Consensus 21 ~~~l~gk~~lVTGas~gIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 98 (271)
T 4ibo_A 21 IFDLGGRTALVTGSSRGLGRAMAEGLAVAGAR--ILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLD 98 (271)
T ss_dssp GGCCTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999987 9999999988877666666667789999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|+||||||+.. ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..+
T Consensus 99 ~~~g~iD~lv~nAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g------~iV~isS~~~ 165 (271)
T 4ibo_A 99 EQGIDVDILVNNAGIQF-------RKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYG------KIVNIGSLTS 165 (271)
T ss_dssp HHTCCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGG
T ss_pred HHCCCCCEEEECCCCCC-------CCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------EEEEEccHHh
Confidence 99999999999999875 5667788899999999999999999999999999887654 9999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~~~~ 252 (282)
..+ .++...|+++|++++.|+++++.|++++ +|+||+|+||+++|++.+.. ....+..+..+|+|
T Consensus 166 ~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~ped 240 (271)
T 4ibo_A 166 ELA---RATVAPYTVAKGGIKMLTRAMAAEWAQY--GIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPAKRWGKPQE 240 (271)
T ss_dssp TSB---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHHSTTCSCBCGGG
T ss_pred CCC---CCCchhHHHHHHHHHHHHHHHHHHHhhh--CeEEEEEEeccEeCcchhhcccCHHHHHHHHhcCCCCCCcCHHH
Confidence 876 6778899999999999999999999998 89999999999999986543 12356677889999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+.+++++++....++|+.+.+|||+.
T Consensus 241 va~~v~~L~s~~~~~itG~~i~vdGG~~ 268 (271)
T 4ibo_A 241 LVGTAVFLSASASDYVNGQIIYVDGGML 268 (271)
T ss_dssp GHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHhCccccCCCCcEEEECCCee
Confidence 9999999999988999999999999974
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=307.09 Aligned_cols=241 Identities=19% Similarity=0.298 Sum_probs=213.1
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc-CCCceeEEEeeCCChhHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR-FPERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~-~~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
...++++||++|||||++|||+++|++|+++|++ |++++|+.+++++..+.+.+ .+.++.++++|++|+++++++++
T Consensus 13 ~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~ 90 (266)
T 4egf_A 13 AGVLRLDGKRALITGATKGIGADIARAFAAAGAR--LVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELAR 90 (266)
T ss_dssp CGGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 3457899999999999999999999999999988 99999998887765544433 46789999999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.++++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.+ ++||++||
T Consensus 91 ~~~~~~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~-----g~iv~isS 158 (266)
T 4egf_A 91 RAAEAFGGLDVLVNNAGISH-------PQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEG-----GAIITVAS 158 (266)
T ss_dssp HHHHHHTSCSEEEEECCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC-----EEEEEECC
T ss_pred HHHHHcCCCCEEEECCCcCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-----eEEEEEcc
Confidence 99999999999999999875 5667788899999999999999999999999999876532 49999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCC
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFT 249 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~ 249 (282)
..+..+ .++...|+++|++++.|+++++.|++++ +|+||+|+||+++|++.+.. ....+..+..+
T Consensus 159 ~~~~~~---~~~~~~Y~asK~a~~~l~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~ 233 (266)
T 4egf_A 159 AAALAP---LPDHYAYCTSKAGLVMATKVLARELGPH--GIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARIPLGRFAV 233 (266)
T ss_dssp GGGTSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTTCTTSSCBC
T ss_pred hhhccC---CCCChHHHHHHHHHHHHHHHHHHHHhhh--CeEEEEEEeCCCcCchhhhhccChHHHHHHHhcCCCCCCcC
Confidence 998876 6778899999999999999999999998 89999999999999975432 23456677789
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+|+|+.+++++++...+++|+.+.+|||+.
T Consensus 234 p~dva~~v~~L~s~~~~~itG~~i~vdGG~~ 264 (266)
T 4egf_A 234 PHEVSDAVVWLASDAASMINGVDIPVDGGYT 264 (266)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHHhCchhcCccCcEEEECCCcc
Confidence 9999999999999988999999999999974
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=306.20 Aligned_cols=240 Identities=23% Similarity=0.344 Sum_probs=211.3
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec-CCCcccccccccccCCCceeEEEeeCCChhHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-NPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r-~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
+..++++||++|||||++|||+++|++|+++|++ |++.+| +.+..+.+.+.+...+.++.++++|++|+++++++++
T Consensus 21 m~~~~l~~k~vlVTGas~gIG~aia~~la~~G~~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~ 98 (269)
T 4dmm_A 21 MTALPLTDRIALVTGASRGIGRAIALELAAAGAK--VAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFA 98 (269)
T ss_dssp ---CTTTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred ccccCCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 3457899999999999999999999999999998 888888 4455555555566667789999999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.+++|++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||
T Consensus 99 ~~~~~~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g------~iv~isS 165 (269)
T 4dmm_A 99 AVIERWGRLDVLVNNAGITR-------DTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSG------RIINIAS 165 (269)
T ss_dssp HHHHHHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC------EEEEECC
T ss_pred HHHHHcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc------EEEEECc
Confidence 99999999999999999875 5667788899999999999999999999999999887665 9999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-----ccCCCCCCCCChHHHH
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-----QRNVPEGKLFTKEFSV 254 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-----~~~~~~~~~~~~~~~a 254 (282)
..+..+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.... ....+..+..+|+++|
T Consensus 166 ~~~~~~---~~~~~~Y~asK~a~~~l~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~~~~~~p~~r~~~~~dvA 240 (269)
T 4dmm_A 166 VVGEMG---NPGQANYSAAKAGVIGLTKTVAKELASR--GITVNAVAPGFIATDMTSELAAEKLLEVIPLGRYGEAAEVA 240 (269)
T ss_dssp HHHHHC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCBTTSCSCHHHHHHHGGGCTTSSCBCHHHHH
T ss_pred hhhcCC---CCCchhHHHHHHHHHHHHHHHHHHHhhh--CcEEEEEEECCCcCcccccccHHHHHhcCCCCCCCCHHHHH
Confidence 988877 6677899999999999999999999988 89999999999999987642 3345667788999999
Q ss_pred HHHHHHHhh-cCCCCCCceeecCCccc
Q 023441 255 QKLLNIINN-IKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 255 ~~~~~~~~~-~~~~~~g~~~~~d~~~~ 280 (282)
+.+.+++++ ....++|+.+.+|||+.
T Consensus 241 ~~v~~l~s~~~~~~itG~~i~vdGG~~ 267 (269)
T 4dmm_A 241 GVVRFLAADPAAAYITGQVINIDGGLV 267 (269)
T ss_dssp HHHHHHHHCGGGGGCCSCEEEESTTSC
T ss_pred HHHHHHhCCcccCCCcCCEEEECCCee
Confidence 999999997 67899999999999975
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=305.90 Aligned_cols=238 Identities=25% Similarity=0.276 Sum_probs=211.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||++|||||++|||+++|++|+++|++ |++++|+.+.++.+.+.+...+.++.++++|++|+++++++++++.+
T Consensus 4 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (280)
T 3tox_A 4 SRLEGKIAIVTGASSGIGRAAALLFAREGAK--VVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVR 81 (280)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE--EEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999999999988 99999999887776666666677999999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|+||||||+.. +..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..+.
T Consensus 82 ~~g~iD~lvnnAg~~~------~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g------~iv~isS~~~~ 149 (280)
T 3tox_A 82 RFGGLDTAFNNAGALG------AMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGG------SLTFTSSFVGH 149 (280)
T ss_dssp HHSCCCEEEECCCCCC------SCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE------EEEEECCSBTT
T ss_pred HcCCCCEEEECCCCCC------CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC------EEEEEcChhhC
Confidence 9999999999999864 24567788899999999999999999999999999987664 99999998876
Q ss_pred -cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc------------cCCCCCCCCCh
Q 023441 184 -IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ------------RNVPEGKLFTK 250 (282)
Q Consensus 184 -~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~------------~~~~~~~~~~~ 250 (282)
.+ .++...|++||++++.|+++++.|+++. +|+||+|+||+++|++..... ...+..+..+|
T Consensus 150 ~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p 224 (280)
T 3tox_A 150 TAG---FAGVAPYAASKAGLIGLVQALAVELGAR--GIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARP 224 (280)
T ss_dssp TBC---CTTCHHHHHHHHHHHHHHHHHHHHHHTT--TEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTSTTSSCBCH
T ss_pred cCC---CCCchhHHHHHHHHHHHHHHHHHHhhhc--CeEEEEEEECCCCCchhhhhccccCHHHHHHHhccCccCCCcCH
Confidence 44 5677899999999999999999999988 899999999999999865411 12344567899
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++|+.+++++++....++|+.+.+|||+.
T Consensus 225 edvA~~v~~L~s~~a~~itG~~i~vdGG~~ 254 (280)
T 3tox_A 225 EEIAEAALYLASDGASFVTGAALLADGGAS 254 (280)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHhCccccCCcCcEEEECCCcc
Confidence 999999999999988999999999999864
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-44 Score=304.74 Aligned_cols=236 Identities=16% Similarity=0.249 Sum_probs=211.5
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.++||++|||||++|||+++|++|+++|++ |++++|+.++++++.+.+...+.++.++++|++|+++++++++++.++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGAD--LVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKA 85 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcCE--EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999988 999999988887766666666789999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||... ...++.+.+.++|++.+++|+.+++++++.+.|.|.+++ | +||++||..+..
T Consensus 86 ~g~id~lv~nAg~~~------~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g------~iv~isS~~~~~ 152 (264)
T 3ucx_A 86 YGRVDVVINNAFRVP------SMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-G------AVVNVNSMVVRH 152 (264)
T ss_dssp TSCCSEEEECCCSCC------CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-C------EEEEECCGGGGC
T ss_pred cCCCcEEEECCCCCC------CCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-C------EEEEECcchhcc
Confidence 999999999999863 256677888999999999999999999999999998754 3 999999999887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------------ccCCCCC
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------------QRNVPEG 245 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------------~~~~~~~ 245 (282)
+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+.. ....+..
T Consensus 153 ~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 227 (264)
T 3ucx_A 153 S---QAKYGAYKMAKSALLAMSQTLATELGEK--GIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGSDLK 227 (264)
T ss_dssp C---CTTCHHHHHHHHHHHHHHHHHHHHHHTT--TCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSSSS
T ss_pred C---CCccHHHHHHHHHHHHHHHHHHHHhCcc--CeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhccCCcc
Confidence 6 6777899999999999999999999988 89999999999999975432 1234567
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+..+|+|+|+.+++++++...+++|+.+.+|||++
T Consensus 228 r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 262 (264)
T 3ucx_A 228 RLPTEDEVASAILFMASDLASGITGQALDVNCGEY 262 (264)
T ss_dssp SCCBHHHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred cCCCHHHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 78899999999999999988999999999999975
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=305.43 Aligned_cols=238 Identities=19% Similarity=0.266 Sum_probs=205.7
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc------------ccccccccccCCCceeEEEeeCCC
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG------------ATGLLDLKNRFPERLDVLQLDLTV 90 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~------------~~~~~~~~~~~~~~v~~~~~Dls~ 90 (282)
.++++||++|||||++|||+++|++|+++|++ |++++|++.. +++..+.+...+.++.++++|++|
T Consensus 5 m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 82 (281)
T 3s55_A 5 MADFEGKTALITGGARGMGRSHAVALAEAGAD--IAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKD 82 (281)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCe--EEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 35789999999999999999999999999988 9999997432 223334444557789999999999
Q ss_pred hhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccc
Q 023441 91 ESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERD 170 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~ 170 (282)
+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.+++++++++.|.|.+++.|
T Consensus 83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g---- 151 (281)
T 3s55_A 83 RAALESFVAEAEDTLGGIDIAITNAGIST-------IALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYG---- 151 (281)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEECCCCCC-------CCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE----
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC----
Confidence 99999999999999999999999999875 5566778899999999999999999999999999876654
Q ss_pred eeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc------cc----
Q 023441 171 VAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF------QR---- 240 (282)
Q Consensus 171 ~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~------~~---- 240 (282)
+||++||..+..+ .++...|++||+++++|+++++.|++++ +|+||+|+||+++|++.+.. .+
T Consensus 152 --~iv~isS~~~~~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~ 224 (281)
T 3s55_A 152 --RIVTVSSMLGHSA---NFAQASYVSSKWGVIGLTKCAAHDLVGY--GITVNAVAPGNIETPMTHNDFVFGTMRPDLEK 224 (281)
T ss_dssp --EEEEECCGGGGSC---CTTCHHHHHHHHHHHHHHHHHHHHTGGG--TEEEEEEEECSBCSTTTSSHHHHHC-------
T ss_pred --EEEEECChhhcCC---CCCCchhHHHHHHHHHHHHHHHHHHhhc--CcEEEEEecCcccCccccchhhhccccccccc
Confidence 9999999998876 6677899999999999999999999988 89999999999999986531 00
Q ss_pred -------------CCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 241 -------------NVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 241 -------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.....++.+|+|+|+.+++++++....++|+.+.+|||+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~~ 277 (281)
T 3s55_A 225 PTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGAT 277 (281)
T ss_dssp CCHHHHHHHHHHHCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred cchhHHHHHHHhhhccCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCcc
Confidence 1112566799999999999999988999999999999974
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=307.78 Aligned_cols=239 Identities=21% Similarity=0.326 Sum_probs=212.9
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC-CceeEEEeeCCChhHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP-ERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~-~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
..++++||++|||||++|||+++|++|+++|++ |++++|+.+++++..+.+...+ .++.++++|++|++++++++++
T Consensus 35 ~m~~l~~k~vlVTGas~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 112 (293)
T 3rih_A 35 VMFDLSARSVLVTGGTKGIGRGIATVFARAGAN--VAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAART 112 (293)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH
Confidence 356789999999999999999999999999997 9999999988877666665555 5899999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.++++++|+||||||+.. ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||.
T Consensus 113 ~~~~~g~iD~lvnnAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g------~iV~isS~ 179 (293)
T 3rih_A 113 VVDAFGALDVVCANAGIFP-------EARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRG------RVILTSSI 179 (293)
T ss_dssp HHHHHSCCCEEEECCCCCC-------CCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSC------EEEEECCS
T ss_pred HHHHcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC------EEEEEeCh
Confidence 9999999999999999875 5567788899999999999999999999999999887665 99999999
Q ss_pred ccc-cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--------cccCCCCCCCCChH
Q 023441 181 VGS-IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--------FQRNVPEGKLFTKE 251 (282)
Q Consensus 181 ~~~-~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--------~~~~~~~~~~~~~~ 251 (282)
.+. .+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++... +....+..+..+|+
T Consensus 180 ~~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~p~ 254 (293)
T 3rih_A 180 TGPVTG---YPGWSHYGASKAAQLGFMRTAAIELAPR--GVTVNAILPGNILTEGLVDMGEEYISGMARSIPMGMLGSPV 254 (293)
T ss_dssp BTTTBB---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECSBCCHHHHHTCHHHHHHHHTTSTTSSCBCHH
T ss_pred hhccCC---CCCCHHHHHHHHHHHHHHHHHHHHHhhh--CeEEEEEecCCCcCcchhhccHHHHHHHHhcCCCCCCCCHH
Confidence 875 44 5677899999999999999999999998 8999999999999986542 22345667778999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++|+.+.+++++...+++|+.|.+|||+.
T Consensus 255 dvA~~v~fL~s~~a~~itG~~i~vdGG~~ 283 (293)
T 3rih_A 255 DIGHLAAFLATDEAGYITGQAIVVDGGQV 283 (293)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 99999999999988999999999999875
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-44 Score=302.76 Aligned_cols=235 Identities=18% Similarity=0.268 Sum_probs=207.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||++|||||++|||+++|++|+++|++ |++.+|+.+..++..+.+ +.++.++++|++|+++++++++++.+
T Consensus 2 ~~l~gk~vlVTGas~gIG~a~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (247)
T 3rwb_A 2 ERLAGKTALVTGAAQGIGKAIAARLAADGAT--VIVSDINAEGAKAAAASI---GKKARAIAADISDPGSVKALFAEIQA 76 (247)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEECSCHHHHHHHHHHH---CTTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999998 999999987766544433 56899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++|++|+||||||... ..+..+.+.++|++.+++|+.+++++++++.|.|.+++.+ ++||++||..+.
T Consensus 77 ~~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~-----g~iv~isS~~~~ 144 (247)
T 3rwb_A 77 LTGGIDILVNNASIVP-------FVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKA-----GRVISIASNTFF 144 (247)
T ss_dssp HHSCCSEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-----EEEEEECCTHHH
T ss_pred HCCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-----cEEEEECchhhc
Confidence 9999999999999875 5667788899999999999999999999999999876521 499999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC---------CCCCCCCChHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN---------VPEGKLFTKEFSV 254 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~---------~~~~~~~~~~~~a 254 (282)
.+ .++...|++||+++++|+++++.|++++ +|+||+|+||+++|++.+..... .+..+..+|+++|
T Consensus 145 ~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~pedva 219 (247)
T 3rwb_A 145 AG---TPNMAAYVAAKGGVIGFTRALATELGKY--NITANAVTPGLIESDGVKASPHNEAFGFVEMLQAMKGKGQPEHIA 219 (247)
T ss_dssp HT---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCHHHHTSGGGGGHHHHHHHSSSCSCBCHHHHH
T ss_pred cC---CCCchhhHHHHHHHHHHHHHHHHHhhhc--CeEEEEEeeCcCcCccccccChhHHHHHHhcccccCCCcCHHHHH
Confidence 76 6778899999999999999999999998 89999999999999875532211 4456677999999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCccc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.+.+++++...+++|+.+.+|||+.
T Consensus 220 ~~v~~L~s~~~~~itG~~i~vdGG~~ 245 (247)
T 3rwb_A 220 DVVSFLASDDARWITGQTLNVDAGMV 245 (247)
T ss_dssp HHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred HHHHHHhCccccCCCCCEEEECCCcc
Confidence 99999999988999999999999975
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=305.18 Aligned_cols=238 Identities=19% Similarity=0.300 Sum_probs=209.7
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
...|+++||++|||||++|||+++|++|+++|++ |++++|+.+.+++..+.. +.++.++++|++|++++++++++
T Consensus 20 ~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~ 94 (277)
T 4dqx_A 20 FQSMDLNQRVCIVTGGGSGIGRATAELFAKNGAY--VVVADVNEDAAVRVANEI---GSKAFGVRVDVSSAKDAESMVEK 94 (277)
T ss_dssp --CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHH
Confidence 4558899999999999999999999999999987 999999987766544432 56899999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.+++|++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||.
T Consensus 95 ~~~~~g~iD~lv~nAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g------~iv~isS~ 161 (277)
T 4dqx_A 95 TTAKWGRVDVLVNNAGFGT-------TGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGG------SIINTTSY 161 (277)
T ss_dssp HHHHHSCCCEEEECCCCCC-------CBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCE------EEEEECCG
T ss_pred HHHHcCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc------EEEEECch
Confidence 9999999999999999875 5567778889999999999999999999999999887654 99999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--------------cccCCCCCC
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--------------FQRNVPEGK 246 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--------------~~~~~~~~~ 246 (282)
.+..+ .++...|++||+++++|+++++.|++++ +|+||+|+||+++|++... +....+..+
T Consensus 162 ~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~r 236 (277)
T 4dqx_A 162 TATSA---IADRTAYVASKGAISSLTRAMAMDHAKE--GIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAVMDR 236 (277)
T ss_dssp GGTSC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTTSTTCS
T ss_pred hhCcC---CCCChhHHHHHHHHHHHHHHHHHHhhhc--CeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhcCcccC
Confidence 98876 6778899999999999999999999998 8999999999999997321 223445667
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 247 LFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
..+|+++|+.+++++++....++|+.+.+|||+..
T Consensus 237 ~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 271 (277)
T 4dqx_A 237 MGTAEEIAEAMLFLASDRSRFATGSILTVDGGSSI 271 (277)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSSS
T ss_pred CcCHHHHHHHHHHHhCCccCCCcCCEEEECCchhh
Confidence 78999999999999998889999999999999754
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=305.14 Aligned_cols=240 Identities=20% Similarity=0.248 Sum_probs=203.7
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC-CCcccccccccccC-CCceeEEEeeCCChhHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN-PNGATGLLDLKNRF-PERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~-~~~~~~~~~~~~~~-~~~v~~~~~Dls~~~~~~~~~ 98 (282)
...++++||++|||||++|||+++|++|+++|++ |++.+|+ .+..+...+.+... +.++.++++|++|++++++++
T Consensus 18 ~~~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 95 (281)
T 3v2h_A 18 LYFQSMMTKTAVITGSTSGIGLAIARTLAKAGAN--IVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMM 95 (281)
T ss_dssp ----CCTTCEEEEETCSSHHHHHHHHHHHHTTCE--EEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHH
T ss_pred hhhhccCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHH
Confidence 3457889999999999999999999999999987 9999994 44555544444433 568999999999999999999
Q ss_pred HHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 99 KSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
+++.+++|++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++|
T Consensus 96 ~~~~~~~g~iD~lv~nAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g------~iv~is 162 (281)
T 3v2h_A 96 AMVADRFGGADILVNNAGVQF-------VEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWG------RIINIA 162 (281)
T ss_dssp HHHHHHTSSCSEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEEC
T ss_pred HHHHHHCCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC------EEEEEC
Confidence 999999999999999999875 5667788899999999999999999999999999887654 999999
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-------------------
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ------------------- 239 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~------------------- 239 (282)
|..+..+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+...
T Consensus 163 S~~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (281)
T 3v2h_A 163 SAHGLVA---SPFKSAYVAAKHGIMGLTKTVALEVAES--GVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVM 237 (281)
T ss_dssp CGGGTSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCC--------------------------
T ss_pred CcccccC---CCCchHHHHHHHHHHHHHHHHHHHhhhc--CcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHH
Confidence 9998877 6677899999999999999999999998 899999999999999865321
Q ss_pred -cCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 240 -RNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 240 -~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
...+..+..+|+++|+.+++++++....++|+.+.+|||+.
T Consensus 238 ~~~~p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdGG~~ 279 (281)
T 3v2h_A 238 LKGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGGWT 279 (281)
T ss_dssp --CCTTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEESTTGG
T ss_pred HhcCCCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECCCcc
Confidence 22345667899999999999999888999999999999974
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=307.81 Aligned_cols=238 Identities=15% Similarity=0.185 Sum_probs=201.0
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC---cccccccccccCCCceeEEEeeCCChhHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN---GATGLLDLKNRFPERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~---~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~ 98 (282)
..++++||++|||||++|||+++|++|+++|++ |++++|... .++++.+.+...+.++.++++|++|++++++++
T Consensus 5 ~~~~l~~k~vlVTGas~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 82 (262)
T 3ksu_A 5 KYHDLKNKVIVIAGGIKNLGALTAKTFALESVN--LVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLF 82 (262)
T ss_dssp CCSCCTTCEEEEETCSSHHHHHHHHHHTTSSCE--EEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHH
T ss_pred cccCCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 457899999999999999999999999999998 888877543 344445555555778999999999999999999
Q ss_pred HHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 99 KSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
+++.++++++|+||||||+.. ..++.+.+.++|++.+++|+.+++++++.+.|.|.+. ++||++|
T Consensus 83 ~~~~~~~g~iD~lvnnAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--------g~iv~is 147 (262)
T 3ksu_A 83 DFAEKEFGKVDIAINTVGKVL-------KKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPN--------GHIITIA 147 (262)
T ss_dssp HHHHHHHCSEEEEEECCCCCC-------SSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEE--------EEEEEEC
T ss_pred HHHHHHcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCC--------CEEEEEe
Confidence 999999999999999999875 5667788899999999999999999999999999432 4999999
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCC
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFT 249 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~ 249 (282)
|..+..+ .+....|++||++++.|+++++.|++++ +|+||+|+||+++|++.... ....+..+..+
T Consensus 148 S~~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~r~~~ 222 (262)
T 3ksu_A 148 TSLLAAY---TGFYSTYAGNKAPVEHYTRAASKELMKQ--QISVNAIAPGPMDTSFFYGQETKESTAFHKSQAMGNQLTK 222 (262)
T ss_dssp CCHHHHH---HCCCCC-----CHHHHHHHHHHHHTTTT--TCEEEEEEECCCCTHHHHTCC------------CCCCSCC
T ss_pred chhhccC---CCCCchhHHHHHHHHHHHHHHHHHHHHc--CcEEEEEeeCCCcCccccccCchHHHHHHHhcCcccCCCC
Confidence 9887766 5667899999999999999999999988 89999999999999975432 12234456779
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
|+++|+.+++++++ ...++|+.+.+|||+..|
T Consensus 223 pedvA~~v~~L~s~-~~~itG~~i~vdGg~~~~ 254 (262)
T 3ksu_A 223 IEDIAPIIKFLTTD-GWWINGQTIFANGGYTTR 254 (262)
T ss_dssp GGGTHHHHHHHHTT-TTTCCSCEEEESTTCCCC
T ss_pred HHHHHHHHHHHcCC-CCCccCCEEEECCCccCC
Confidence 99999999999998 889999999999999887
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=307.30 Aligned_cols=238 Identities=22% Similarity=0.321 Sum_probs=212.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||++|||||++|||+++|++|+++|++ |++.+|+.+..+.+.+.+...+.++.++.+|++|.++++++++++.+
T Consensus 24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (270)
T 3ftp_A 24 KTLDKQVAIVTGASRGIGRAIALELARRGAM--VIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLK 101 (270)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999999999997 99999998887776666555567899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|+||||||+.. ..+..+.+.++|++.+++|+.+++++++++.|.|.+++.| +||++||..+.
T Consensus 102 ~~g~iD~lvnnAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g------~iv~isS~~~~ 168 (270)
T 3ftp_A 102 EFGALNVLVNNAGITQ-------DQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGG------RIVNITSVVGS 168 (270)
T ss_dssp HHSCCCEEEECCCCCC-------CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCHHHH
T ss_pred HcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC------EEEEECchhhC
Confidence 9999999999999875 5566778889999999999999999999999999876654 99999999888
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------ccCCCCCCCCChHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--------QRNVPEGKLFTKEFSVQ 255 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--------~~~~~~~~~~~~~~~a~ 255 (282)
.+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+.. ....+..+..+|+++|+
T Consensus 169 ~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~ 243 (270)
T 3ftp_A 169 AG---NPGQVNYAAAKAGVAGMTRALAREIGSR--GITVNCVAPGFIDTDMTKGLPQEQQTALKTQIPLGRLGSPEDIAH 243 (270)
T ss_dssp HC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCSHHHHHSCHHHHHHHHTTCTTCSCBCHHHHHH
T ss_pred CC---CCCchhHHHHHHHHHHHHHHHHHHHhhh--CeEEEEEEeCCCcCcchhhcCHHHHHHHHhcCCCCCCCCHHHHHH
Confidence 77 6778899999999999999999999998 89999999999999976432 23455677789999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCcccC
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
.+++++++....++|+.+.+|||+..
T Consensus 244 ~v~~L~s~~~~~itG~~i~vdGG~~~ 269 (270)
T 3ftp_A 244 AVAFLASPQAGYITGTTLHVNGGMFM 269 (270)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTTSSC
T ss_pred HHHHHhCCCcCCccCcEEEECCCccc
Confidence 99999998889999999999999753
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-44 Score=307.86 Aligned_cols=239 Identities=23% Similarity=0.308 Sum_probs=207.2
Q ss_pred ccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHH
Q 023441 20 ASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 20 ~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
.+..++++||++|||||++|||+++|++|+++|++ |++++|+.+..+...+.+ +.++.++++|++|+++++++++
T Consensus 21 sm~~~~l~gk~vlVTGas~gIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~ 95 (277)
T 3gvc_A 21 SMNHPDLAGKVAIVTGAGAGIGLAVARRLADEGCH--VLCADIDGDAADAAATKI---GCGAAACRVDVSDEQQIIAMVD 95 (277)
T ss_dssp ------CTTCEEEETTTTSTHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHHH---CSSCEEEECCTTCHHHHHHHHH
T ss_pred CCCccCCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHc---CCcceEEEecCCCHHHHHHHHH
Confidence 34556899999999999999999999999999987 999999987766544443 5689999999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.++++++|+||||||+.. ..++.+.+.++|++.+++|+.+++++++++.|.|.+++.| +||++||
T Consensus 96 ~~~~~~g~iD~lvnnAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g------~Iv~isS 162 (277)
T 3gvc_A 96 ACVAAFGGVDKLVANAGVVH-------LASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGG------AIVNLSS 162 (277)
T ss_dssp HHHHHHSSCCEEEECCCCCC-------CBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE------EEEEECC
T ss_pred HHHHHcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------EEEEEcc
Confidence 99999999999999999975 5567778899999999999999999999999999887654 9999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---------------CCCC
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR---------------NVPE 244 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---------------~~~~ 244 (282)
..+..+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+.... ..+.
T Consensus 163 ~~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (277)
T 3gvc_A 163 LAGQVA---VGGTGAYGMSKAGIIQLSRITAAELRSS--GIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMIARLQ 237 (277)
T ss_dssp GGGTSC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCHHHHHHHTCC------CCHHHHHHHHH
T ss_pred hhhccC---CCCchhHHHHHHHHHHHHHHHHHHhccc--CeEEEEEeeCCccCchHHHhhhcchhhHHHHhhhhhhhccc
Confidence 998877 6778899999999999999999999998 8999999999999997543221 1223
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 245 GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
.+..+|+|+|+.+++++++....++|+.+.+|||+..
T Consensus 238 ~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~~ 274 (277)
T 3gvc_A 238 GRMAAPEEMAGIVVFLLSDDASMITGTTQIADGGTIA 274 (277)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred cCCCCHHHHHHHHHHHcCCccCCccCcEEEECCcchh
Confidence 4667999999999999999889999999999999865
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=304.12 Aligned_cols=237 Identities=22% Similarity=0.281 Sum_probs=199.8
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEe-ecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT-CRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~-~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
..|.++||++|||||++|||+++|++|+++|++ |++. .|+.+..+.+.+.+...+.++.++++|++|++++++++++
T Consensus 21 ~~m~~~~k~~lVTGas~GIG~aia~~la~~G~~--Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 98 (267)
T 3u5t_A 21 QSMMETNKVAIVTGASRGIGAAIAARLASDGFT--VVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFAT 98 (267)
T ss_dssp ------CCEEEEESCSSHHHHHHHHHHHHHTCE--EEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred cccccCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 446678999999999999999999999999998 7776 4555555556666666677899999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.++++++|+||||||+.. ..+..+.+.++|++.+++|+.+++++++.+.|.|+++ ++||++||.
T Consensus 99 ~~~~~g~iD~lvnnAG~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--------g~iv~isS~ 163 (267)
T 3u5t_A 99 AEEAFGGVDVLVNNAGIMP-------LTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG--------GRIINMSTS 163 (267)
T ss_dssp HHHHHSCEEEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE--------EEEEEECCT
T ss_pred HHHHcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--------CeEEEEeCh
Confidence 9999999999999999875 5667788899999999999999999999999999653 399999998
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc---------cccCCCCCCCCChH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP---------FQRNVPEGKLFTKE 251 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~---------~~~~~~~~~~~~~~ 251 (282)
.+..+ .++...|++||+++++|+++++.|+++. +|+||+|+||+++|++... +....+..+..+|+
T Consensus 164 ~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~pe 238 (267)
T 3u5t_A 164 QVGLL---HPSYGIYAAAKAGVEAMTHVLSKELRGR--DITVNAVAPGPTATDLFLEGKSDEVRDRFAKLAPLERLGTPQ 238 (267)
T ss_dssp HHHHC---CTTCHHHHHHHHHHHHHHHHHHHHTTTS--CCEEEEEEECCBC-----------CHHHHHTSSTTCSCBCHH
T ss_pred hhccC---CCCchHHHHHHHHHHHHHHHHHHHhhhh--CCEEEEEEECCCcCccccccCCHHHHHHHHhcCCCCCCcCHH
Confidence 88766 6677899999999999999999999988 8999999999999998643 12335566778999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++|+.+.+++++....++|+.+.+|||++
T Consensus 239 dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 267 (267)
T 3u5t_A 239 DIAGAVAFLAGPDGAWVNGQVLRANGGII 267 (267)
T ss_dssp HHHHHHHHHHSTTTTTCCSEEEEESSSCC
T ss_pred HHHHHHHHHhCccccCccCCEEEeCCCcC
Confidence 99999999999888999999999999975
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-44 Score=306.45 Aligned_cols=239 Identities=20% Similarity=0.270 Sum_probs=209.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.-++||++|||||++|||+++|++|+++|++ |++++|+.++.+...+.+...+.++.++++|++|.++++++++++.+
T Consensus 20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 97 (279)
T 3sju_A 20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIA--VYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVE 97 (279)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 3457999999999999999999999999988 99999998887776666666677999999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhh--hhhcCCCCCccceeEEEEeeccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSP--LLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~--~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
++|++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.| .|.+++.| +||++||..
T Consensus 98 ~~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g------~iV~isS~~ 164 (279)
T 3sju_A 98 RFGPIGILVNSAGRNG-------GGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWG------RIVNIASTG 164 (279)
T ss_dssp HHCSCCEEEECCCCCC-------CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCE------EEEEECCGG
T ss_pred HcCCCcEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCc------EEEEECChh
Confidence 9999999999999875 56677888999999999999999999999999 57665554 999999999
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------------ccCC
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------------QRNV 242 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------------~~~~ 242 (282)
+..+ .++...|++||+++++|+++++.|++++ +|+||+|+||+++|++.+.. ....
T Consensus 165 ~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (279)
T 3sju_A 165 GKQG---VMYAAPYTASKHGVVGFTKSVGFELAKT--GITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKI 239 (279)
T ss_dssp GTSC---CTTCHHHHHHHHHHHHHHHHHHHHTGGG--TEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTTC
T ss_pred hccC---CCCChhHHHHHHHHHHHHHHHHHHHHhh--CcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhcC
Confidence 8876 6677899999999999999999999998 89999999999999875432 1234
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 243 PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
+..+..+|+++|+.+++++++....++|+.+.+|||+..|
T Consensus 240 p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~~y 279 (279)
T 3sju_A 240 PLGRYSTPEEVAGLVGYLVTDAAASITAQALNVCGGLGNY 279 (279)
T ss_dssp TTSSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTTCCCC
T ss_pred CCCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCCccCC
Confidence 5567789999999999999988889999999999998765
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=301.75 Aligned_cols=239 Identities=21% Similarity=0.249 Sum_probs=208.3
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC-CCceeEEEeeC--CChhHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-PERLDVLQLDL--TVESTIEASAK 99 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~-~~~v~~~~~Dl--s~~~~~~~~~~ 99 (282)
...++||++|||||++|||+++|++|+++|++ |++++|+.++++...+.+... +.++.++.+|+ +|.++++++++
T Consensus 7 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 84 (252)
T 3f1l_A 7 QDLLNDRIILVTGASDGIGREAAMTYARYGAT--VILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQ 84 (252)
T ss_dssp TTTTTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHH
Confidence 34689999999999999999999999999987 999999988777655444332 34789999999 99999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.++++++|+||||||... +..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||
T Consensus 85 ~~~~~~g~id~lv~nAg~~~------~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g------~iv~isS 152 (252)
T 3f1l_A 85 RIAVNYPRLDGVLHNAGLLG------DVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAG------SLVFTSS 152 (252)
T ss_dssp HHHHHCSCCSEEEECCCCCC------CCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSC------EEEEECC
T ss_pred HHHHhCCCCCEEEECCccCC------CCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCC------EEEEECC
Confidence 99999999999999999863 24567778899999999999999999999999999887765 9999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHH
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLN 259 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~ 259 (282)
..+..+ .++...|++||+++++|+++++.|+++ +|+||+|+||+++|++........+.....+|+++|+.+++
T Consensus 153 ~~~~~~---~~~~~~Y~asK~a~~~l~~~la~e~~~---~irvn~v~PG~v~t~~~~~~~~~~~~~~~~~p~dva~~~~~ 226 (252)
T 3f1l_A 153 SVGRQG---RANWGAYAASKFATEGMMQVLADEYQQ---RLRVNCINPGGTRTAMRASAFPTEDPQKLKTPADIMPLYLW 226 (252)
T ss_dssp GGGTSC---CTTCHHHHHHHHHHHHHHHHHHHHTTT---TCEEEEEECCSBSSHHHHHHCTTCCGGGSBCTGGGHHHHHH
T ss_pred hhhccC---CCCCchhHHHHHHHHHHHHHHHHHhcC---CcEEEEEecCcccCchhhhhCCccchhccCCHHHHHHHHHH
Confidence 998876 667789999999999999999999975 39999999999999987655544455567799999999999
Q ss_pred HHhhcCCCCCCceeecCCcccC
Q 023441 260 IINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 260 ~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
++++...+++|+.+.+|||+.+
T Consensus 227 L~s~~~~~itG~~i~vdgG~~~ 248 (252)
T 3f1l_A 227 LMGDDSRRKTGMTFDAQPGRKP 248 (252)
T ss_dssp HHSGGGTTCCSCEEESSCC---
T ss_pred HcCccccCCCCCEEEeCCCcCC
Confidence 9999889999999999999864
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-43 Score=298.89 Aligned_cols=236 Identities=22% Similarity=0.289 Sum_probs=208.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||++|||||++|||+++|++|+++|++ |++.+|+.++++...+.+ +.++.++++|++|+++++++++++.+
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (271)
T 3tzq_B 7 AELENKVAIITGACGGIGLETSRVLARAGAR--VVLADLPETDLAGAAASV---GRGAVHHVVDLTNEVSVRALIDFTID 81 (271)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECTTSCHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEcCCHHHHHHHHHHh---CCCeEEEECCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999999999987 999999998876654444 56889999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++|++|+||||||.... ...+..+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..+.
T Consensus 82 ~~g~id~lv~nAg~~~~-----~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g------~iv~isS~~~~ 150 (271)
T 3tzq_B 82 TFGRLDIVDNNAAHSDP-----ADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGG------AIVNISSATAH 150 (271)
T ss_dssp HHSCCCEEEECCCCCCT-----TCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE------EEEEECCGGGT
T ss_pred HcCCCCEEEECCCCCCC-----CCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC------EEEEECCHHHc
Confidence 99999999999998731 13456678899999999999999999999999999887654 99999999988
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc---------cccCCCCCCCCChHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP---------FQRNVPEGKLFTKEFSV 254 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~---------~~~~~~~~~~~~~~~~a 254 (282)
.+ .+....|++||++++.|+++++.|++++ +|+||+|+||+++|++.+. +....+..+..+|+++|
T Consensus 151 ~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~p~dvA 225 (271)
T 3tzq_B 151 AA---YDMSTAYACTKAAIETLTRYVATQYGRH--GVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHHLAGRIGEPHEIA 225 (271)
T ss_dssp SB---CSSCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCCTTTC---CHHHHHHHHTTSTTSSCBCHHHHH
T ss_pred CC---CCCChHHHHHHHHHHHHHHHHHHHHhhc--CEEEEEEEeCCCcCccccccCCHHHHHHHHhcCCCCCCcCHHHHH
Confidence 76 6677899999999999999999999998 8999999999999998762 12234556778999999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCccc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.+++++++....++|+.+.+|||+.
T Consensus 226 ~~v~~L~s~~~~~itG~~i~vdGG~~ 251 (271)
T 3tzq_B 226 ELVCFLASDRAAFITGQVIAADSGLL 251 (271)
T ss_dssp HHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHHhCcccCCcCCCEEEECCCcc
Confidence 99999999988999999999999954
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=298.06 Aligned_cols=237 Identities=21% Similarity=0.277 Sum_probs=213.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||++|||||++|||+++|++|+++|++ |++++|+.+..++..+.+.+.+.++.++++|++|+++++++++++.+
T Consensus 1 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (247)
T 3lyl_A 1 MSLNEKVALVTGASRGIGFEVAHALASKGAT--VVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKA 78 (247)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999987 99999999887776666666677999999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|++|||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..+.
T Consensus 79 ~~~~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g------~iv~isS~~~~ 145 (247)
T 3lyl_A 79 ENLAIDILVNNAGITR-------DNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWG------RIISIGSVVGS 145 (247)
T ss_dssp TTCCCSEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCTHHH
T ss_pred HcCCCCEEEECCCCCC-------CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCe------EEEEEcchhhc
Confidence 9999999999999875 5567778899999999999999999999999999876654 99999999888
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFSVQ 255 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~a~ 255 (282)
.+ .++...|++||++++.|+++++.|+++. +|++++|+||+++|++.+... ...+..+..+|+++|+
T Consensus 146 ~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~ 220 (247)
T 3lyl_A 146 AG---NPGQTNYCAAKAGVIGFSKSLAYEVASR--NITVNVVAPGFIATDMTDKLTDEQKSFIATKIPSGQIGEPKDIAA 220 (247)
T ss_dssp HC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCTTTTTSCHHHHHHHHTTSTTCCCBCHHHHHH
T ss_pred cC---CCCcHHHHHHHHHHHHHHHHHHHHHHHc--CeEEEEEeeCcEecccchhccHHHHHHHhhcCCCCCCcCHHHHHH
Confidence 76 6778899999999999999999999988 899999999999999876432 2345667789999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCccc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+++++++....++|+.+.+|||+.
T Consensus 221 ~i~~l~s~~~~~~tG~~i~vdgG~~ 245 (247)
T 3lyl_A 221 AVAFLASEEAKYITGQTLHVNGGMY 245 (247)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred HHHHHhCCCcCCccCCEEEECCCEe
Confidence 9999999888999999999999975
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=299.79 Aligned_cols=238 Identities=19% Similarity=0.273 Sum_probs=199.5
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEe-ecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT-CRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~-~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.++++||++|||||++|||+++|++|+++|++ |+++ .|+.+..+...+.+...+.++.++++|++|+++++++++++
T Consensus 3 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (259)
T 3edm_A 3 LQRFTNRTIVVAGAGRDIGRACAIRFAQEGAN--VVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAA 80 (259)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999998 8777 55555555555556666778999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+++|++|+||||||... ...++.+.+.++|++.+++|+.+++++++++.|.|.+. ++||++||..
T Consensus 81 ~~~~g~id~lv~nAg~~~------~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--------g~iv~isS~~ 146 (259)
T 3edm_A 81 ADKFGEIHGLVHVAGGLI------ARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKG--------GAIVTFSSQA 146 (259)
T ss_dssp HHHHCSEEEEEECCCCCC------CCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE--------EEEEEECCHH
T ss_pred HHHhCCCCEEEECCCccC------CCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CEEEEEcCHH
Confidence 999999999999999763 24567788899999999999999999999999999762 3999999998
Q ss_pred cc-cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc---------cCCCCCCCCChH
Q 023441 182 GS-IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ---------RNVPEGKLFTKE 251 (282)
Q Consensus 182 ~~-~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~---------~~~~~~~~~~~~ 251 (282)
+. .+ .++...|++||++++.|+++++.|+++ +|+||+|+||+++|++.+... ...+..+..+|+
T Consensus 147 ~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~---~I~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~pe 220 (259)
T 3edm_A 147 GRDGG---GPGALAYATSKGAVMTFTRGLAKEVGP---KIRVNAVCPGMISTTFHDTFTKPEVRERVAGATSLKREGSSE 220 (259)
T ss_dssp HHHCC---STTCHHHHHHHHHHHHHHHHHHHHHTT---TCEEEEEEECCBCC----------------------CCBCHH
T ss_pred hccCC---CCCcHHHHHHHHHHHHHHHHHHHHHCC---CCEEEEEEECCCcCcccccccChHHHHHHHhcCCCCCCcCHH
Confidence 76 44 567789999999999999999999976 399999999999999876432 123445667999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
++|+.+.+++++...+++|+.|.+||++.+|
T Consensus 221 dva~~v~~L~s~~~~~itG~~i~vdGg~~~~ 251 (259)
T 3edm_A 221 DVAGLVAFLASDDAAYVTGACYDINGGVLFS 251 (259)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESBCSSBC
T ss_pred HHHHHHHHHcCccccCccCCEEEECCCcCCC
Confidence 9999999999988899999999999999887
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=303.92 Aligned_cols=236 Identities=21% Similarity=0.192 Sum_probs=210.2
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++++||++|||||++|||+++|++|+++|++ |++++|+.+..+...+.+...+.++.++++|++|.++++++++++.
T Consensus 28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 105 (275)
T 4imr_A 28 IFGLRGRTALVTGSSRGIGAAIAEGLAGAGAH--VILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAE 105 (275)
T ss_dssp HHCCTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999987 9999999988877766666667899999999999999999999998
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+. +++|+||||||... ..+..+.+.++|++.+++|+.+++++++++.|.|.+++.| +||++||..+
T Consensus 106 ~~-g~iD~lvnnAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g------~Iv~isS~~~ 171 (275)
T 4imr_A 106 AI-APVDILVINASAQI-------NATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWG------RVVSIGSINQ 171 (275)
T ss_dssp HH-SCCCEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGG
T ss_pred Hh-CCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------EEEEECCHHh
Confidence 88 99999999999875 5667788899999999999999999999999999876654 9999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-----------C-CCCCCCCCh
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-----------N-VPEGKLFTK 250 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-----------~-~~~~~~~~~ 250 (282)
..+ .+....|++||++++.|+++++.|++++ +|+||+|+||+++|++...... . .+..+..+|
T Consensus 172 ~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p 246 (275)
T 4imr_A 172 LRP---KSVVTAYAATKAAQHNLIQSQARDFAGD--NVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTLNWMGRAGRP 246 (275)
T ss_dssp TSC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHHSTTCSCBCG
T ss_pred CCC---CCCchhhHHHHHHHHHHHHHHHHHhccc--CcEEEEEEeccccCcccccccccChHHHHHHHhhcCccCCCcCH
Confidence 765 5666779999999999999999999988 8999999999999997543211 1 156677899
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+++|+.+++++++....++|+.+.+|||+
T Consensus 247 edvA~~v~fL~s~~a~~itG~~i~vdGG~ 275 (275)
T 4imr_A 247 EEMVGAALFLASEACSFMTGETIFLTGGY 275 (275)
T ss_dssp GGGHHHHHHHHSGGGTTCCSCEEEESSCC
T ss_pred HHHHHHHHHHcCcccCCCCCCEEEeCCCC
Confidence 99999999999998899999999999985
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=303.40 Aligned_cols=239 Identities=20% Similarity=0.287 Sum_probs=210.1
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCC---ceeEEEeeCCChhHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE---RLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~---~v~~~~~Dls~~~~~~~~~~ 99 (282)
.++++||++|||||++|||+++|++|+++|++ |++++|+.+..+...+.+.+.+. ++.++++|++|+++++++++
T Consensus 6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 83 (281)
T 3svt_A 6 QLSFQDRTYLVTGGGSGIGKGVAAGLVAAGAS--VMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVD 83 (281)
T ss_dssp --CCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHH
T ss_pred ccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHH
Confidence 36789999999999999999999999999988 99999998887766555544443 89999999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.+++|++|+||||||... ...+..+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||
T Consensus 84 ~~~~~~g~id~lv~nAg~~~------~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g------~iv~isS 151 (281)
T 3svt_A 84 AVTAWHGRLHGVVHCAGGSE------NIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGG------SFVGISS 151 (281)
T ss_dssp HHHHHHSCCCEEEECCCCCC------CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE------EEEEECC
T ss_pred HHHHHcCCCCEEEECCCcCC------CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc------EEEEEeC
Confidence 99999999999999999843 24567788899999999999999999999999999887664 9999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCC
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFT 249 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~ 249 (282)
..+..+ .+....|++||++++.|+++++.|++++ +|+||+|+||+++|++.+.. ....+..+..+
T Consensus 152 ~~~~~~---~~~~~~Y~asK~a~~~l~~~la~e~~~~--gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~r~~~ 226 (281)
T 3svt_A 152 IAASNT---HRWFGAYGVTKSAVDHLMQLAADELGAS--WVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTPLPRQGE 226 (281)
T ss_dssp HHHHSC---CTTCTHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHHCSSSSCBC
T ss_pred HHHcCC---CCCChhHHHHHHHHHHHHHHHHHHhhhc--CeEEEEEEeCcCcCcchhhcccCHHHHHHHHhcCCCCCCCC
Confidence 988766 5677899999999999999999999988 89999999999999986542 12345667789
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+|+|+.+++++++....++|+.+.+||++.
T Consensus 227 ~~dva~~~~~l~s~~~~~itG~~~~vdgG~~ 257 (281)
T 3svt_A 227 VEDVANMAMFLLSDAASFVTGQVINVDGGQM 257 (281)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHHhCcccCCCCCCEEEeCCChh
Confidence 9999999999999888999999999999875
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-43 Score=296.96 Aligned_cols=237 Identities=18% Similarity=0.144 Sum_probs=193.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||++|||||++|||+++|++|+++|++ |++++|+.++++.+.+.+...+.++.++++|++|+++++++++++.+
T Consensus 3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (252)
T 3h7a_A 3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFT--VFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADA 80 (252)
T ss_dssp --CCSCEEEEECCSSHHHHHHHHHHHHTTCE--EEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHh
Confidence 5688999999999999999999999999987 99999999988877776666678999999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
. +++|+||||||+.. ..++.+.+.++|++.+++|+.+++.+++.+.|.|++++.| +||++||..+.
T Consensus 81 ~-g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g------~iv~isS~~~~ 146 (252)
T 3h7a_A 81 H-APLEVTIFNVGANV-------NFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQG------KIFFTGATASL 146 (252)
T ss_dssp H-SCEEEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEEEEGGGT
T ss_pred h-CCceEEEECCCcCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------EEEEECCHHHc
Confidence 9 99999999999875 5667788899999999999999999999999999887654 99999999988
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEE-EEEecccccCCCCcccccC--------CCCCCCCChHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVIC-ILLHPGTVDTDLSRPFQRN--------VPEGKLFTKEFSV 254 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v-~~i~Pg~v~t~~~~~~~~~--------~~~~~~~~~~~~a 254 (282)
.+ .++...|++||+++++|+++++.|+++. +|+| |+|+||+++|++.+..... .+.. ..+|+++|
T Consensus 147 ~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gi~v~n~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~-~~~pedvA 220 (252)
T 3h7a_A 147 RG---GSGFAAFASAKFGLRAVAQSMARELMPK--NIHVAHLIIDSGVDTAWVRERREQMFGKDALANPDL-LMPPAAVA 220 (252)
T ss_dssp CC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEEC----------------------------CCHHHHH
T ss_pred CC---CCCCccHHHHHHHHHHHHHHHHHHhhhc--CCEEEEEecCCccCChhhhccchhhhhhhhhcCCcc-CCCHHHHH
Confidence 77 6778899999999999999999999998 8999 9999999999987654322 1333 78999999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
+.++++++......+|+.....-..++|
T Consensus 221 ~~~~~l~s~~~~~~~~~i~~~~~~~~~~ 248 (252)
T 3h7a_A 221 GAYWQLYQQPKSAWTFEMEIRPYGEGHH 248 (252)
T ss_dssp HHHHHHHHCCGGGBCSEEEEBCC-----
T ss_pred HHHHHHHhCchhcceeeEEeeecCCCCC
Confidence 9999999988788888887766555554
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=294.44 Aligned_cols=242 Identities=21% Similarity=0.266 Sum_probs=193.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||++|||||++|||+++|++|+++|++ |++++|+.+..+...+.+ +.++.++++|++|+++++++++++.+
T Consensus 3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 77 (257)
T 3tpc_A 3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGAT--VLGLDLKPPAGEEPAAEL---GAAVRFRNADVTNEADATAALAFAKQ 77 (257)
T ss_dssp -CCTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESSCC---------------CEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCChHHHHHHHHHh---CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999988 999999988776544433 46899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++|++|+||||||....... .....+.+.++|++.+++|+.+++++++++.|.|.++........++||++||..+.
T Consensus 78 ~~g~id~lv~nAg~~~~~~~---~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~ 154 (257)
T 3tpc_A 78 EFGHVHGLVNCAGTAPGEKI---LGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAF 154 (257)
T ss_dssp HHSCCCEEEECCCCCCCCCS---EETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH
T ss_pred HcCCCCEEEECCCCCCCCcc---ccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhc
Confidence 99999999999998751110 112235678899999999999999999999999987532212223599999999988
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------CCCC-CCCCChHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------NVPE-GKLFTKEFSV 254 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~~~~-~~~~~~~~~a 254 (282)
.+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+.... ..+. .+..+|+|+|
T Consensus 155 ~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~~r~~~~~dva 229 (257)
T 3tpc_A 155 DG---QIGQAAYAASKGGVAALTLPAARELARF--GIRVVTIAPGIFDTPMMAGMPQDVQDALAASVPFPPRLGRAEEYA 229 (257)
T ss_dssp HC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBSCC--------------CCSSSSCSCBCHHHHH
T ss_pred cC---CCCCcchHHHHHHHHHHHHHHHHHHHHc--CeEEEEEEeCCCCChhhccCCHHHHHHHHhcCCCCCCCCCHHHHH
Confidence 77 6677899999999999999999999998 8999999999999998654322 2333 5678999999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCccc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.+.+++++ ..++|+.+.+|||+.
T Consensus 230 ~~v~~l~s~--~~itG~~i~vdGG~~ 253 (257)
T 3tpc_A 230 ALVKHICEN--TMLNGEVIRLDGALR 253 (257)
T ss_dssp HHHHHHHHC--TTCCSCEEEESTTCC
T ss_pred HHHHHHccc--CCcCCcEEEECCCcc
Confidence 999999975 789999999999864
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=303.08 Aligned_cols=241 Identities=18% Similarity=0.259 Sum_probs=193.7
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec-CCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-NPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r-~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++||++|||||++|||+++|++|+++|++ |++++| +.+..+...+.+...+.++.++++|++|+++++++++++.+
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 103 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASGFD--IAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVA 103 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHH
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCCCe--EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999998 888886 55555555555556677899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|+||||||.... ...++.+.+.++|++.+++|+.+++++++.+.|.|.+++.. ..++||++||..+.
T Consensus 104 ~~g~iD~lvnnAg~~~~-----~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~---~~g~Iv~isS~~~~ 175 (280)
T 4da9_A 104 EFGRIDCLVNNAGIASI-----VRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDAR---ASRSIINITSVSAV 175 (280)
T ss_dssp HHSCCCEEEEECC-----------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCC---CCEEEEEECCC---
T ss_pred HcCCCCEEEECCCcccc-----CCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCC---CCCEEEEEcchhhc
Confidence 99999999999998420 14567788899999999999999999999999999875410 11499999999988
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---------CCCCCCCCChHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR---------NVPEGKLFTKEFSV 254 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---------~~~~~~~~~~~~~a 254 (282)
.+ .++...|++||++++.|+++++.|+++. +|+||+|+||+++|++.+.... ..+..+..+|+|+|
T Consensus 176 ~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA 250 (280)
T 4da9_A 176 MT---SPERLDYCMSKAGLAAFSQGLALRLAET--GIAVFEVRPGIIRSDMTAAVSGKYDGLIESGLVPMRRWGEPEDIG 250 (280)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHTTT--TEEEEEEEECCBCC----------------------CCBCHHHHH
T ss_pred cC---CCCccHHHHHHHHHHHHHHHHHHHHHHh--CcEEEEEeecCCcCCchhhcchhHHHHHhhcCCCcCCcCCHHHHH
Confidence 76 6677899999999999999999999988 8999999999999998764322 23445677999999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCccc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.+.+++++....++|+.+.+|||+.
T Consensus 251 ~~v~~L~s~~~~~itG~~i~vdGG~~ 276 (280)
T 4da9_A 251 NIVAGLAGGQFGFATGSVIQADGGLS 276 (280)
T ss_dssp HHHHHHHTSTTGGGTTCEEEESTTCC
T ss_pred HHHHHHhCccccCCCCCEEEECCCcc
Confidence 99999999988999999999999974
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-43 Score=297.43 Aligned_cols=235 Identities=23% Similarity=0.308 Sum_probs=207.5
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC-CcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~-~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++|++|||||++|||+++|++|+++|++ |++.+|.. +..+...+.+...+.++.++++|++|.++++++++++.++
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 79 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYN--VAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQ 79 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999998 88877744 5555555556566778999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..+..
T Consensus 80 ~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g------~iv~isS~~~~~ 146 (246)
T 3osu_A 80 FGSLDVLVNNAGITR-------DNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSG------AIINLSSVVGAV 146 (246)
T ss_dssp HSCCCEEEECCCCCC-------CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCHHHHH
T ss_pred cCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC------EEEEEcchhhcC
Confidence 999999999999875 4566778889999999999999999999999999876654 999999998887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFSVQK 256 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~a~~ 256 (282)
+ .++...|++||++++.|+++++.|++++ +|++|+|+||+++|++.+... ...+..+..+|+|+|+.
T Consensus 147 ~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~ 221 (246)
T 3osu_A 147 G---NPGQANYVATKAGVIGLTKSAARELASR--GITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANT 221 (246)
T ss_dssp C---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBGGGCCSCSCHHHHHHHHTTCTTCSCBCHHHHHHH
T ss_pred C---CCCChHHHHHHHHHHHHHHHHHHHhccc--CeEEEEEEECCCcCCcccccCHHHHHHHHhcCCCCCCcCHHHHHHH
Confidence 7 5677899999999999999999999998 899999999999999876432 24566777899999999
Q ss_pred HHHHHhhcCCCCCCceeecCCccc
Q 023441 257 LLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 257 ~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.+++++....++|+.+.+|||+.
T Consensus 222 v~~l~s~~~~~itG~~i~vdgG~~ 245 (246)
T 3osu_A 222 VAFLASDKAKYITGQTIHVNGGMY 245 (246)
T ss_dssp HHHHTSGGGTTCCSCEEEESTTSC
T ss_pred HHHHhCccccCCCCCEEEeCCCcc
Confidence 999999888999999999999974
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-43 Score=296.99 Aligned_cols=230 Identities=22% Similarity=0.318 Sum_probs=204.8
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||++|||||++|||+++|++|+++|++ |++++|+++.++++.+.. +.++.++++|++|+++++++++++.+.
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAE--VLLTGRNESNIARIREEF---GPRVHALRSDIADLNEIAVLGAAAGQT 79 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999987 999999987766554443 458999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|+++ ++||++||..+..
T Consensus 80 ~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--------g~iv~isS~~~~~ 144 (255)
T 4eso_A 80 LGAIDLLHINAGVSE-------LEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREG--------GSIVFTSSVADEG 144 (255)
T ss_dssp HSSEEEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE--------EEEEEECCGGGSS
T ss_pred hCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC--------CEEEEECChhhcC
Confidence 999999999999875 5677888999999999999999999999999998653 3999999999887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------------ccCCCCCCCCCh
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--------------QRNVPEGKLFTK 250 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--------------~~~~~~~~~~~~ 250 (282)
+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.... ....+..+..+|
T Consensus 145 ~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p 219 (255)
T 4eso_A 145 G---HPGMSVYSASKAALVSFASVLAAELLPR--GIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPMKRNGTA 219 (255)
T ss_dssp B---CTTBHHHHHHHHHHHHHHHHHHHHTGGG--TCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHSTTSSCBCH
T ss_pred C---CCCchHHHHHHHHHHHHHHHHHHHHhhh--CcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCCCCCCcCH
Confidence 6 6778899999999999999999999998 89999999999999986431 112456677899
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+|+.+++++++ ..+++|+.+.+|||+.
T Consensus 220 edvA~~v~~L~s~-~~~itG~~i~vdGG~~ 248 (255)
T 4eso_A 220 DEVARAVLFLAFE-ATFTTGAKLAVDGGLG 248 (255)
T ss_dssp HHHHHHHHHHHHT-CTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHHcCc-CcCccCCEEEECCCcc
Confidence 9999999999998 8899999999999975
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-43 Score=299.97 Aligned_cols=238 Identities=21% Similarity=0.254 Sum_probs=206.3
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
...++++||++|||||++|||+++|++|+++|++ |++++|+ +..++..+.+...+.++.++++|++|+++++++ .+
T Consensus 24 ~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~--V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~-~~ 99 (273)
T 3uf0_A 24 TGPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAH--VLAWGRT-DGVKEVADEIADGGGSAEAVVADLADLEGAANV-AE 99 (273)
T ss_dssp -CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESS-THHHHHHHHHHTTTCEEEEEECCTTCHHHHHHH-HH
T ss_pred ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEcCH-HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHH-HH
Confidence 3457899999999999999999999999999998 8888865 334444444455567899999999999999999 44
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
..++++++|+||||||+.. ..+..+.+.++|++.+++|+.+++++++++.|.|.+++.| +||++||.
T Consensus 100 ~~~~~g~iD~lv~nAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g------~IV~isS~ 166 (273)
T 3uf0_A 100 ELAATRRVDVLVNNAGIIA-------RAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSG------RIVTIASM 166 (273)
T ss_dssp HHHHHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCG
T ss_pred HHHhcCCCcEEEECCCCCC-------CCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC------EEEEEcch
Confidence 5566799999999999975 5677788899999999999999999999999999877654 99999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCCh
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTK 250 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~~ 250 (282)
.+..+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.... ....+..+..+|
T Consensus 167 ~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p 241 (273)
T 3uf0_A 167 LSFQG---GRNVAAYAASKHAVVGLTRALASEWAGR--GVGVNALAPGYVVTANTAALRADDERAAEITARIPAGRWATP 241 (273)
T ss_dssp GGTSC---CSSCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHHSTTSSCBCG
T ss_pred HhcCC---CCCChhHHHHHHHHHHHHHHHHHHHhhc--CcEEEEEEeCCCcCCchhhcccCHHHHHHHHhcCCCCCCCCH
Confidence 98876 6677899999999999999999999998 89999999999999986533 123456778899
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+|+.+++++++....++|+.+.+|||+.
T Consensus 242 edva~~v~~L~s~~a~~itG~~i~vdGG~~ 271 (273)
T 3uf0_A 242 EDMVGPAVFLASDAASYVHGQVLAVDGGWL 271 (273)
T ss_dssp GGGHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHhCchhcCCcCCEEEECcCcc
Confidence 999999999999988999999999999975
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=297.83 Aligned_cols=239 Identities=24% Similarity=0.328 Sum_probs=207.5
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC-CcccccccccccCCCceeEEEeeCCChhHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NGATGLLDLKNRFPERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~-~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
+..++++||++|||||++|||+++|++|+++|++ |++++++. +..+.+.+.+...+.++.++++|++|+++++++++
T Consensus 24 m~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~--V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 101 (271)
T 3v2g_A 24 MTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAA--VALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIR 101 (271)
T ss_dssp HTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 3457899999999999999999999999999998 88886654 44555556666667899999999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.+++++++.+.|.|++. ++||++||
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~--------g~iv~isS 166 (271)
T 3v2g_A 102 ETVEALGGLDILVNSAGIWH-------SAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDG--------GRIITIGS 166 (271)
T ss_dssp HHHHHHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT--------CEEEEECC
T ss_pred HHHHHcCCCcEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC--------CEEEEEeC
Confidence 99999999999999999875 5677788899999999999999999999999998652 28999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------ccCCCCCCCCChHH
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------QRNVPEGKLFTKEF 252 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------~~~~~~~~~~~~~~ 252 (282)
..+... +.++...|+++|++++.|+++++.|+++. +|+||+|+||+++|++.... ....+..+..+|++
T Consensus 167 ~~~~~~--~~~~~~~Y~asKaa~~~l~~~la~e~~~~--gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~r~~~ped 242 (271)
T 3v2g_A 167 NLAELV--PWPGISLYSASKAALAGLTKGLARDLGPR--GITVNIVHPGSTDTDMNPADGDHAEAQRERIATGSYGEPQD 242 (271)
T ss_dssp GGGTCC--CSTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECSBCSSSSCSSCSSHHHHHHTCTTSSCBCHHH
T ss_pred hhhccC--CCCCchHHHHHHHHHHHHHHHHHHHhhhh--CeEEEEEecCCCcCCcccccchhHHHHHhcCCCCCCCCHHH
Confidence 766543 14677899999999999999999999998 89999999999999986532 22345667789999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+.+++++++....++|+.+.+|||+.
T Consensus 243 vA~~v~fL~s~~~~~itG~~i~vdGG~~ 270 (271)
T 3v2g_A 243 IAGLVAWLAGPQGKFVTGASLTIDGGAN 270 (271)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHHHHhCcccCCccCCEEEeCcCcc
Confidence 9999999999888999999999999964
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-43 Score=305.38 Aligned_cols=238 Identities=21% Similarity=0.290 Sum_probs=203.6
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC------------CcccccccccccCCCceeEEEeeCCC
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP------------NGATGLLDLKNRFPERLDVLQLDLTV 90 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~------------~~~~~~~~~~~~~~~~v~~~~~Dls~ 90 (282)
..+++||++|||||++|||+++|++|+++|++ |++++|+. +.+++..+.+...+.++.++++|++|
T Consensus 41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~--Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d 118 (317)
T 3oec_A 41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGAD--IVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRD 118 (317)
T ss_dssp -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCE--EEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCe--EEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 34689999999999999999999999999998 88888762 22233334444556789999999999
Q ss_pred hhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccc
Q 023441 91 ESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERD 170 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~ 170 (282)
+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.+++++++++.|.|.+++.+
T Consensus 119 ~~~v~~~~~~~~~~~g~iD~lVnnAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~---- 187 (317)
T 3oec_A 119 LASLQAVVDEALAEFGHIDILVSNVGISN-------QGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQG---- 187 (317)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCC-------CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSC----
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC----
Confidence 99999999999999999999999999875 5567788899999999999999999999999999876532
Q ss_pred eeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc------c------
Q 023441 171 VAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------F------ 238 (282)
Q Consensus 171 ~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~------~------ 238 (282)
++||++||..+..+ .++...|++||++++.|+++++.|+++. +|+||+|+||+++|++... +
T Consensus 188 -g~Iv~isS~~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~ 261 (317)
T 3oec_A 188 -GSVIFVSSTVGLRG---APGQSHYAASKHGVQGLMLSLANEVGRH--NIRVNSVNPGAVNTEMALNEKLLKMFLPHLEN 261 (317)
T ss_dssp -EEEEEECCGGGSSC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBSSHHHHCHHHHHHHCTTCSS
T ss_pred -CEEEEECcHHhcCC---CCCCcchHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCcccCccccchhhhhhhhhhccc
Confidence 49999999998877 6778899999999999999999999998 8999999999999986421 0
Q ss_pred ------------ccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 239 ------------QRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 239 ------------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
....+ ..+.+|+|+|+.+.+++++...+++|+.|.+|||+.
T Consensus 262 ~~~~~~~~~~~~~~~~p-~~~~~pedvA~av~fL~s~~a~~itG~~i~vdGG~~ 314 (317)
T 3oec_A 262 PTREDAAELFSQLTLLP-IPWVEPEDVSNAVAWLASDEARYIHGAAIPVDGGQL 314 (317)
T ss_dssp CCHHHHHHHHTTTCSSS-SSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred cchhHHHHHHhhhccCC-CCCCCHHHHHHHHHHHcCCcccCCCCCEEEECcchh
Confidence 01111 456699999999999999988999999999999974
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=300.65 Aligned_cols=235 Identities=17% Similarity=0.236 Sum_probs=200.4
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++++||++|||||++|||+++|++|+++|++ |++.+|+.++++...+.. +.++.++++|++|+++++++++++.
T Consensus 22 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (266)
T 3grp_A 22 MFKLTGRKALVTGATGGIGEAIARCFHAQGAI--VGLHGTREDKLKEIAADL---GKDVFVFSANLSDRKSIKQLAEVAE 96 (266)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHH---CSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHh---CCceEEEEeecCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999987 999999887766544332 5689999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..+
T Consensus 97 ~~~g~iD~lvnnAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g------~Iv~isS~~~ 163 (266)
T 3grp_A 97 REMEGIDILVNNAGITR-------DGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYG------RIINITSIVG 163 (266)
T ss_dssp HHHTSCCEEEECCCCC------------CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCC--
T ss_pred HHcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc------EEEEECCHHH
Confidence 99999999999999875 5566778889999999999999999999999999876654 9999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------ccCCCCCCCCChHHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--------QRNVPEGKLFTKEFSV 254 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--------~~~~~~~~~~~~~~~a 254 (282)
..+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+.. ....+..+..+|+|+|
T Consensus 164 ~~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~~edvA 238 (266)
T 3grp_A 164 VVG---NPGQTNYCAAKAGLIGFSKALAQEIASR--NITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIPMKRMGIGEEIA 238 (266)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCSHHHHTCCHHHHHHHHTTCTTCSCBCHHHHH
T ss_pred cCC---CCCchhHHHHHHHHHHHHHHHHHHhhhh--CcEEEEEeeCcCCCchhhccCHHHHHHHHhcCCCCCCcCHHHHH
Confidence 876 5677899999999999999999999998 89999999999999975532 2345667788999999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCccc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.+++++++....++|+.+.+|||+.
T Consensus 239 ~~v~~L~s~~~~~itG~~i~vdGG~~ 264 (266)
T 3grp_A 239 FATVYLASDEAAYLTGQTLHINGGMA 264 (266)
T ss_dssp HHHHHHHSGGGTTCCSCEEEESTTC-
T ss_pred HHHHHHhCccccCccCCEEEECCCee
Confidence 99999999888999999999999974
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=299.72 Aligned_cols=238 Identities=19% Similarity=0.240 Sum_probs=199.9
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC------------CcccccccccccCCCceeEEEeeCC
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP------------NGATGLLDLKNRFPERLDVLQLDLT 89 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~------------~~~~~~~~~~~~~~~~v~~~~~Dls 89 (282)
...+++||++|||||++|||+++|++|+++|++ |++++|+. +.++...+.+...+.++.++++|++
T Consensus 7 ~~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 84 (278)
T 3sx2_A 7 SEGPLTGKVAFITGAARGQGRAHAVRLAADGAD--IIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVR 84 (278)
T ss_dssp --CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred CCCCCCCCEEEEECCCChHHHHHHHHHHHCCCe--EEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 456789999999999999999999999999998 99999873 2233333344444678999999999
Q ss_pred ChhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCcc
Q 023441 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIER 169 (282)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~ 169 (282)
|+++++++++++.++++++|+||||||+.. ... +.++|++.+++|+.+++++++++.|.|.+++.+
T Consensus 85 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~-------~~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~--- 150 (278)
T 3sx2_A 85 DRESLSAALQAGLDELGRLDIVVANAGIAP-------MSA----GDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTG--- 150 (278)
T ss_dssp CHHHHHHHHHHHHHHHCCCCEEEECCCCCC-------CSS----THHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSC---
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-------CCC----CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC---
Confidence 999999999999999999999999999874 211 367899999999999999999999999876422
Q ss_pred ceeEEEEeeccccccCC-CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------
Q 023441 170 DVAVVANLSARVGSIGD-NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------- 238 (282)
Q Consensus 170 ~~~~iv~~ss~~~~~~~-~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------- 238 (282)
++||++||..+..+. .+.++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+..
T Consensus 151 --g~iv~isS~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~ 226 (278)
T 3sx2_A 151 --GSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLAGQ--MIRVNSIHPSGVETPMINNEFTREWLAKMA 226 (278)
T ss_dssp --EEEEEECCGGGTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCBSSTTTSSHHHHHHHHHHH
T ss_pred --cEEEEEccHHhcCCCccCCCCchHhHHHHHHHHHHHHHHHHHHhcc--CcEEEEEecCCccCccchhhhHHHHHhhcc
Confidence 499999999887663 122566789999999999999999999988 89999999999999987521
Q ss_pred ---------ccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 239 ---------QRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 239 ---------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
....+ .+..+|+|+|+.+++++++...+++|+.+.+|||+.
T Consensus 227 ~~~~~~~~~~~~~p-~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~~ 276 (278)
T 3sx2_A 227 AATDTPGAMGNAMP-VEVLAPEDVANAVAWLVSDQARYITGVTLPVDAGFL 276 (278)
T ss_dssp HHCC--CTTSCSSS-CSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred chhhhhhhhhhhcC-cCcCCHHHHHHHHHHHhCcccccccCCEEeECCCcc
Confidence 11223 567799999999999999888999999999999975
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=298.52 Aligned_cols=237 Identities=20% Similarity=0.269 Sum_probs=205.6
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC-CcccccccccccCCCceeEEEeeCCChhHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NGATGLLDLKNRFPERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~-~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
..+.+++||++|||||++|||+++|++|+++|++ |++++++. +..++..+.+...+.++.++++|++|+++++++++
T Consensus 11 ~~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 88 (270)
T 3is3_A 11 YIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAK--VVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFD 88 (270)
T ss_dssp CCTTCCTTCEEEESCTTSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred cCCCCcCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 3456789999999999999999999999999998 88876654 44555566666667899999999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.++++++|+||||||... ..++.+.+.++|++.+++|+.+++++++++.|.|.+. | +||++||
T Consensus 89 ~~~~~~g~id~lvnnAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--g------~iv~isS 153 (270)
T 3is3_A 89 QAVAHFGHLDIAVSNSGVVS-------FGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEG--G------RIVLTSS 153 (270)
T ss_dssp HHHHHHSCCCEEECCCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT--C------EEEEECC
T ss_pred HHHHHcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC--C------eEEEEeC
Confidence 99999999999999999975 5677788999999999999999999999999999763 2 8999999
Q ss_pred cc-cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------------------
Q 023441 180 RV-GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------------- 238 (282)
Q Consensus 180 ~~-~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------------- 238 (282)
.. +..+ .++...|++||+++++|+++++.|++++ +|+||+|+||+++|++.+..
T Consensus 154 ~~~~~~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (270)
T 3is3_A 154 NTSKDFS---VPKHSLYSGSKGAVDSFVRIFSKDCGDK--KITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMA 228 (270)
T ss_dssp TTTTTCC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHH
T ss_pred chhccCC---CCCCchhHHHHHHHHHHHHHHHHHhccc--CeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHH
Confidence 87 3334 5677899999999999999999999988 89999999999999986521
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 239 QRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 239 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
....+..+..+|+|+|+.+++++++...+++|+.+.+|||+
T Consensus 229 ~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 269 (270)
T 3is3_A 229 AHASPLHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGGA 269 (270)
T ss_dssp HHHSTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred HhcCCCCCCCCHHHHHHHHHHHcCCccCCccCcEEEeCCCC
Confidence 11235567778999999999999988899999999999985
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-43 Score=302.23 Aligned_cols=238 Identities=17% Similarity=0.239 Sum_probs=208.4
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccc-ccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK-NRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~-~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
.+.+++||++|||||++|||+++|++|+++|++ |++++|+.++.++..+.+ ...+.++.++++|++|++++++++++
T Consensus 21 ~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 98 (277)
T 4fc7_A 21 CPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCH--TVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQ 98 (277)
T ss_dssp CTTTTTTCEEEEETTTSHHHHHHHHHHHTTTCE--EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CccccCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 334589999999999999999999999999987 999999987766544333 33467899999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.+++|++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||.
T Consensus 99 ~~~~~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g------~iv~isS~ 165 (277)
T 4fc7_A 99 ALKEFGRIDILINCAAGNF-------LCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGG------VIVNITAT 165 (277)
T ss_dssp HHHHHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCE------EEEEECCS
T ss_pred HHHHcCCCCEEEECCcCCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC------EEEEECch
Confidence 9999999999999999874 5667788899999999999999999999999998776543 99999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc-----------ccccCCCCCCCCC
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR-----------PFQRNVPEGKLFT 249 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~-----------~~~~~~~~~~~~~ 249 (282)
.+..+ .++...|++||+++++|+++++.|++++ +|+||+|+||+++|++.. ......+..+..+
T Consensus 166 ~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~~r~~~ 240 (277)
T 4fc7_A 166 LGNRG---QALQVHAGSAKAAVDAMTRHLAVEWGPQ--NIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGN 240 (277)
T ss_dssp HHHHT---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTSTTSSCBC
T ss_pred hhCCC---CCCcHHHHHHHHHHHHHHHHHHHHhhhc--CeEEEEEEECCEecchhhhhccCCHHHHHHHhccCCCCCCcC
Confidence 88876 6677899999999999999999999998 899999999999998521 1123456677889
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
|+|+|+.+++++++...+++|+.+.+|||+
T Consensus 241 p~dvA~~v~fL~s~~~~~itG~~i~vdGG~ 270 (277)
T 4fc7_A 241 KTEIAHSVLYLASPLASYVTGAVLVADGGA 270 (277)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTH
T ss_pred HHHHHHHHHHHcCCccCCcCCCEEEECCCc
Confidence 999999999999988899999999999986
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=292.44 Aligned_cols=235 Identities=18% Similarity=0.274 Sum_probs=198.2
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC-CcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~-~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++||++|||||++|||++++++|+++|++ |++++|+. ++.++ .+.+.+.++.++++|++|+++++++++++.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~---~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEGAD--IAIADLVPAPEAEA---AIRNLGRRVLTVKCDVSQPGDVEAFGKQVIS 78 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSCCHHHHH---HHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEcCCchhHHHH---HHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999987 99999987 44433 2233456899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||..+.
T Consensus 79 ~~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g------~iv~isS~~~~ 145 (249)
T 2ew8_A 79 TFGRCDILVNNAGIYP-------LIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWG------RIINLTSTTYW 145 (249)
T ss_dssp HHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGGG
T ss_pred HcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCe------EEEEEcchhhc
Confidence 9999999999999874 4566778889999999999999999999999999876543 99999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc-ccc-c--C------CCCCCCCChHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR-PFQ-R--N------VPEGKLFTKEFS 253 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~-~~~-~--~------~~~~~~~~~~~~ 253 (282)
.+ .++...|++||++++.|+++++.|+++. +|++|+|+||+++|++.. ... . . .+..+..+|+++
T Consensus 146 ~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dv 220 (249)
T 2ew8_A 146 LK---IEAYTHYISTKAANIGFTRALASDLGKD--GITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPLDL 220 (249)
T ss_dssp SC---CSSCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCC------------------CTTSSSCSCCCTHHH
T ss_pred cC---CCCchhHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEecCcCcCccchhccccchhhHHHHhhCccCCCCCHHHH
Confidence 66 5677899999999999999999999988 899999999999999865 322 1 1 234556799999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
|+.+.+++++....++|+.+.+|||+..|
T Consensus 221 a~~~~~l~s~~~~~~tG~~~~vdGG~~~~ 249 (249)
T 2ew8_A 221 TGAAAFLASDDASFITGQTLAVDGGMVRH 249 (249)
T ss_dssp HHHHHHHTSGGGTTCCSCEEEESSSCCCC
T ss_pred HHHHHHHcCcccCCCCCcEEEECCCccCc
Confidence 99999999887789999999999998765
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=297.91 Aligned_cols=239 Identities=22% Similarity=0.312 Sum_probs=207.5
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC-cccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN-GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~-~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
..|+++||++|||||++|||+++|++|+++|++ |++++|+.+ ..+.+.+.+...+.++.++++|++|++++++++++
T Consensus 23 ~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 100 (271)
T 4iin_A 23 NAMQFTGKNVLITGASKGIGAEIAKTLASMGLK--VWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQT 100 (271)
T ss_dssp -CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred hhcccCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHH
Confidence 458899999999999999999999999999998 999999554 44445555666677999999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.+.++++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||.
T Consensus 101 ~~~~~g~id~li~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g------~iv~isS~ 167 (271)
T 4iin_A 101 IVQSDGGLSYLVNNAGVVR-------DKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFG------SVVNVASI 167 (271)
T ss_dssp HHHHHSSCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCH
T ss_pred HHHhcCCCCEEEECCCcCC-------CcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCC------EEEEEech
Confidence 9999999999999999975 5566778889999999999999999999999999877654 99999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEF 252 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~ 252 (282)
.+..+ .++...|+++|++++.|+++++.|+++. +|+|++|+||+++|++.+... ...+..+..+|++
T Consensus 168 ~~~~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~d 242 (271)
T 4iin_A 168 IGERG---NMGQTNYSASKGGMIAMSKSFAYEGALR--NIRFNSVTPGFIETDMNANLKDELKADYVKNIPLNRLGSAKE 242 (271)
T ss_dssp HHHHC---CTTCHHHHHHHHHHHHHHHHHHHHHHTT--TEEEEEEEECSBCCC------------CGGGCTTCSCBCHHH
T ss_pred hhcCC---CCCchHhHHHHHHHHHHHHHHHHHHHHh--CcEEEEEEeCcccCCchhhhcHHHHHHHHhcCCcCCCcCHHH
Confidence 88776 6677899999999999999999999988 899999999999999866432 2345567779999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+.+++++++....++|+.+.+|||+.
T Consensus 243 vA~~i~~l~s~~~~~itG~~i~vdGG~~ 270 (271)
T 4iin_A 243 VAEAVAFLLSDHSSYITGETLKVNGGLY 270 (271)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred HHHHHHHHhCCCcCCCcCCEEEeCCCee
Confidence 9999999999888999999999999974
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=299.08 Aligned_cols=242 Identities=14% Similarity=0.167 Sum_probs=207.4
Q ss_pred ccccccccCcEEEEecCCC--chhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHH
Q 023441 20 ASASVKWKGGVSLVQGASR--GIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 20 ~~~~~~~~gk~vlItGas~--giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~ 97 (282)
+...++++||++|||||++ |||+++|++|+++|++ |++++|+.+..+.+.+..... .++.+++||++|+++++++
T Consensus 22 m~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~--V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~ 98 (296)
T 3k31_A 22 MRTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAE--VALTYLSETFKKRVDPLAESL-GVKLTVPCDVSDAESVDNM 98 (296)
T ss_dssp CCCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCE--EEEEESSGGGHHHHHHHHHHH-TCCEEEECCTTCHHHHHHH
T ss_pred ccchhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCE--EEEEeCChHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHH
Confidence 4456789999999999997 9999999999999998 999999976544444443332 3478999999999999999
Q ss_pred HHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 98 AKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
++++.+++|++|+||||||+..... ...++.+.+.++|++.+++|+.+++++++.+.|.|.+ . ++||++
T Consensus 99 ~~~~~~~~g~iD~lVnnAG~~~~~~---~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~--~------g~IV~i 167 (296)
T 3k31_A 99 FKVLAEEWGSLDFVVHAVAFSDKNE---LKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTN--G------GSILTL 167 (296)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCHHH---HTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT--C------EEEEEE
T ss_pred HHHHHHHcCCCCEEEECCCcCCccc---ccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--C------CEEEEE
Confidence 9999999999999999999874000 0156677888999999999999999999999999876 2 399999
Q ss_pred eccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCC
Q 023441 178 SARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKL 247 (282)
Q Consensus 178 ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~ 247 (282)
||..+..+ .++...|++||+++++|+++++.|++++ +|+||+|+||+++|++..... ...+..+.
T Consensus 168 sS~~~~~~---~~~~~~Y~asKaal~~l~~~la~e~~~~--gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~ 242 (296)
T 3k31_A 168 SYYGAEKV---VPHYNVMGVCKAALEASVKYLAVDLGKQ--QIRVNAISAGPVRTLASSGISDFHYILTWNKYNSPLRRN 242 (296)
T ss_dssp ECGGGTSC---CTTTTHHHHHHHHHHHHHHHHHHHHHTT--TEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHSTTSSC
T ss_pred EehhhccC---CCCchhhHHHHHHHHHHHHHHHHHHhhc--CcEEEEEEECCCcCchhhcccchHHHHHHHHhcCCCCCC
Confidence 99998876 6777899999999999999999999988 899999999999999876432 23456778
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 248 FTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+|+++|+.+++++++...+++|+.+.+|||+.
T Consensus 243 ~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~ 275 (296)
T 3k31_A 243 TTLDDVGGAALYLLSDLGRGTTGETVHVDCGYH 275 (296)
T ss_dssp CCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCHHHHHHHHHHHcCCccCCccCCEEEECCCcc
Confidence 899999999999999888999999999999975
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=296.61 Aligned_cols=235 Identities=20% Similarity=0.301 Sum_probs=207.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||++|||||++|||+++|++|+++|++ |++.+|+.++.++..+.+ +.++.++++|++|+++++++++++.+
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~ 78 (259)
T 4e6p_A 4 KRLEGKSALITGSARGIGRAFAEAYVREGAT--VAIADIDIERARQAAAEI---GPAAYAVQMDVTRQDSIDAAIAATVE 78 (259)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHh---CCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999988 999999987766544443 45789999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++|++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|.+++.+ ++||++||..+.
T Consensus 79 ~~g~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~-----g~iv~isS~~~~ 146 (259)
T 4e6p_A 79 HAGGLDILVNNAALFD-------LAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRG-----GKIINMASQAGR 146 (259)
T ss_dssp HSSSCCEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC-----EEEEEECCGGGT
T ss_pred HcCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-----eEEEEECChhhc
Confidence 9999999999999875 5677788899999999999999999999999999876422 499999999988
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------------ccCCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------------QRNVPE 244 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------------~~~~~~ 244 (282)
.+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+.. ....+.
T Consensus 147 ~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 221 (259)
T 4e6p_A 147 RG---EALVAIYCATKAAVISLTQSAGLDLIKH--RINVNAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAVPF 221 (259)
T ss_dssp SC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCSTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTT
T ss_pred cC---CCCChHHHHHHHHHHHHHHHHHHHhhhc--CCEEEEEEECCCccchhhhhhhhhhhhccCChHHHHHHHhccCCC
Confidence 76 6677899999999999999999999998 89999999999999975432 112455
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 245 GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+..+|+|+|+.+++++++....++|+.+.+|||+.
T Consensus 222 ~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdgG~~ 257 (259)
T 4e6p_A 222 GRMGTAEDLTGMAIFLASAESDYIVSQTYNVDGGNW 257 (259)
T ss_dssp SSCBCTHHHHHHHHHTTSGGGTTCCSCEEEESTTSS
T ss_pred CCCcCHHHHHHHHHHHhCCccCCCCCCEEEECcChh
Confidence 678899999999999999888999999999999874
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-43 Score=299.99 Aligned_cols=236 Identities=19% Similarity=0.240 Sum_probs=198.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-------cccccccCCCceeEEEeeCCChhHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-------LLDLKNRFPERLDVLQLDLTVESTIEA 96 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-------~~~~~~~~~~~v~~~~~Dls~~~~~~~ 96 (282)
|+++||++|||||++|||+++|++|+++|++ |++++|+.++.+. ..+.+...+.++.++++|++|++++++
T Consensus 2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 79 (274)
T 3e03_A 2 LTLSGKTLFITGASRGIGLAIALRAARDGAN--VAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRA 79 (274)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCE--EEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence 6789999999999999999999999999987 9999999876433 222233346789999999999999999
Q ss_pred HHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEE
Q 023441 97 SAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVAN 176 (282)
Q Consensus 97 ~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~ 176 (282)
+++++.+++|++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|++++.| +||+
T Consensus 80 ~~~~~~~~~g~iD~lvnnAG~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g------~iv~ 146 (274)
T 3e03_A 80 AVAATVDTFGGIDILVNNASAIW-------LRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNP------HILT 146 (274)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCC-------CCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSC------EEEE
T ss_pred HHHHHHHHcCCCCEEEECCCccc-------CCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCc------eEEE
Confidence 99999999999999999999875 5567778899999999999999999999999999887765 9999
Q ss_pred eeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecc-cccCCCCcccccCCCCCCCCChHHHHH
Q 023441 177 LSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPG-TVDTDLSRPFQRNVPEGKLFTKEFSVQ 255 (282)
Q Consensus 177 ~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg-~v~t~~~~~~~~~~~~~~~~~~~~~a~ 255 (282)
+||..+..+. +.++...|++||+++++|+++++.|++++ +|+||+|+|| .++|++.+.. ...+.....+|+++|+
T Consensus 147 isS~~~~~~~-~~~~~~~Y~asKaal~~l~~~la~e~~~~--gI~vn~v~PG~~v~T~~~~~~-~~~~~~~~~~pedvA~ 222 (274)
T 3e03_A 147 LAPPPSLNPA-WWGAHTGYTLAKMGMSLVTLGLAAEFGPQ--GVAINALWPRTVIATDAINML-PGVDAAACRRPEIMAD 222 (274)
T ss_dssp CCCCCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEECSBCBCC--------CCCGGGSBCTHHHHH
T ss_pred ECChHhcCCC-CCCCCchHHHHHHHHHHHHHHHHHHhhhc--CEEEEEEECCcccccchhhhc-ccccccccCCHHHHHH
Confidence 9998876541 02456789999999999999999999998 8999999999 6899987433 2334445679999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCcc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.+++++++....++|+++ .|+++
T Consensus 223 ~v~~l~s~~~~~itG~~i-~~~g~ 245 (274)
T 3e03_A 223 AAHAVLTREAAGFHGQFL-IDDEV 245 (274)
T ss_dssp HHHHHHTSCCTTCCSCEE-EHHHH
T ss_pred HHHHHhCccccccCCeEE-EcCcc
Confidence 999999998999999999 55553
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=300.34 Aligned_cols=237 Identities=15% Similarity=0.179 Sum_probs=205.5
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-------cccccccCCCceeEEEeeCCChhHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-------LLDLKNRFPERLDVLQLDLTVESTIE 95 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-------~~~~~~~~~~~v~~~~~Dls~~~~~~ 95 (282)
.|+++||++|||||++|||+++|++|+++|++ |++++|+.++.++ ..+.+...+.++.+++||++|+++++
T Consensus 4 ~m~l~~k~vlVTGas~GIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 81 (285)
T 3sc4_A 4 SMSLRGKTMFISGGSRGIGLAIAKRVAADGAN--VALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVA 81 (285)
T ss_dssp --CCTTCEEEEESCSSHHHHHHHHHHHTTTCE--EEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHH
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence 47889999999999999999999999999987 9999999875433 23333444678999999999999999
Q ss_pred HHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEE
Q 023441 96 ASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVA 175 (282)
Q Consensus 96 ~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv 175 (282)
++++++.++++++|+||||||+.. ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||
T Consensus 82 ~~~~~~~~~~g~id~lvnnAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g------~iv 148 (285)
T 3sc4_A 82 AAVAKTVEQFGGIDICVNNASAIN-------LGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNP------HIL 148 (285)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCC-------CCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSC------EEE
T ss_pred HHHHHHHHHcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc------EEE
Confidence 999999999999999999999875 5567788899999999999999999999999999887665 999
Q ss_pred EeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecc-cccCCCCcccc-cCCCCCCCCChHHH
Q 023441 176 NLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPG-TVDTDLSRPFQ-RNVPEGKLFTKEFS 253 (282)
Q Consensus 176 ~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg-~v~t~~~~~~~-~~~~~~~~~~~~~~ 253 (282)
++||..+..+. .++...|++||+++++|+++++.|++++ +|+||+|+|| +++|++.+... ...+..+..+|+++
T Consensus 149 ~isS~~~~~~~--~~~~~~Y~asKaal~~~~~~la~e~~~~--gI~vn~v~PG~~v~t~~~~~~~~~~~~~~r~~~pedv 224 (285)
T 3sc4_A 149 TLSPPIRLEPK--WLRPTPYMMAKYGMTLCALGIAEELRDA--GIASNTLWPRTTVATAAVQNLLGGDEAMARSRKPEVY 224 (285)
T ss_dssp ECCCCCCCSGG--GSCSHHHHHHHHHHHHHHHHHHHHTGGG--TCEEEEEECSSCBCCHHHHHHHTSCCCCTTCBCTHHH
T ss_pred EECChhhccCC--CCCCchHHHHHHHHHHHHHHHHHHhccc--CcEEEEEeCCCccccHHHHhhccccccccCCCCHHHH
Confidence 99999887652 2456889999999999999999999998 8999999999 68999876543 33455677899999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
|+.+++++++.. .++|+.+..||+.
T Consensus 225 A~~~~~l~s~~~-~~tG~~i~~dgg~ 249 (285)
T 3sc4_A 225 ADAAYVVLNKPS-SYTGNTLLCEDVL 249 (285)
T ss_dssp HHHHHHHHTSCT-TCCSCEEEHHHHH
T ss_pred HHHHHHHhCCcc-cccceEEEEcCch
Confidence 999999999887 9999999988765
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=292.31 Aligned_cols=236 Identities=22% Similarity=0.345 Sum_probs=205.9
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec-CCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-NPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r-~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++||++|||||++|||++++++|+++|++ |++.+| +.++.+...+.+...+.++.++++|++|+++++++++++.+
T Consensus 1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (246)
T 2uvd_A 1 MLKGKVALVTGASRGIGRAIAIDLAKQGAN--VVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVD 78 (246)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999999999987 999998 76666555555544566899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||..+.
T Consensus 79 ~~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g------~iv~isS~~~~ 145 (246)
T 2uvd_A 79 VFGQVDILVNNAGVTK-------DNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHG------RIVNIASVVGV 145 (246)
T ss_dssp HHSCCCEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCTHHH
T ss_pred HcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc------EEEEECCHHhc
Confidence 9999999999999874 4566778889999999999999999999999999876543 99999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFSVQ 255 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~a~ 255 (282)
.+ .++...|+++|++++.|+++++.|++++ +|++|+|+||+++|++.+... ...+..+..+|+++|+
T Consensus 146 ~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~ 220 (246)
T 2uvd_A 146 TG---NPGQANYVAAKAGVIGLTKTSAKELASR--NITVNAIAPGFIATDMTDVLDENIKAEMLKLIPAAQFGEAQDIAN 220 (246)
T ss_dssp HC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBGGGCSSCCCTTHHHHHHHTCTTCSCBCHHHHHH
T ss_pred CC---CCCCchHHHHHHHHHHHHHHHHHHhhhc--CeEEEEEEeccccCcchhhcCHHHHHHHHhcCCCCCCcCHHHHHH
Confidence 66 5677899999999999999999999988 899999999999999865432 1234566789999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCccc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+.+++++....++|+.+.+|||+.
T Consensus 221 ~~~~l~s~~~~~~tG~~~~vdgG~~ 245 (246)
T 2uvd_A 221 AVTFFASDQSKYITGQTLNVDGGMV 245 (246)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred HHHHHcCchhcCCCCCEEEECcCcc
Confidence 9999998878899999999999864
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=295.62 Aligned_cols=241 Identities=22% Similarity=0.321 Sum_probs=207.2
Q ss_pred ccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccc-ccCCCceeEEEeeCCChhHHHHHH
Q 023441 20 ASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK-NRFPERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 20 ~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~-~~~~~~v~~~~~Dls~~~~~~~~~ 98 (282)
+....+++||++|||||++|||++++++|+++|++ |++++|+.++++...+.+ ...+.++.++++|++|++++++++
T Consensus 13 ~~~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~ 90 (267)
T 1vl8_A 13 MKEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCS--VVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLL 90 (267)
T ss_dssp ----CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 34557789999999999999999999999999987 999999987665544333 333568899999999999999999
Q ss_pred HHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 99 KSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
+++.++++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++|
T Consensus 91 ~~~~~~~g~iD~lvnnAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g------~iv~is 157 (267)
T 1vl8_A 91 EAVKEKFGKLDTVVNAAGINR-------RHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNP------SIINIG 157 (267)
T ss_dssp HHHHHHHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSC------EEEEEC
T ss_pred HHHHHHcCCCCEEEECCCcCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc------EEEEEC
Confidence 999999999999999999874 4566778889999999999999999999999999877654 999999
Q ss_pred ccc-cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCC
Q 023441 179 ARV-GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKL 247 (282)
Q Consensus 179 s~~-~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~ 247 (282)
|.. +..+ .++...|+++|++++.|+++++.|+++. +|++|+|+||+++|++..... ...+..+.
T Consensus 158 S~~~~~~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~ 232 (267)
T 1vl8_A 158 SLTVEEVT---MPNISAYAASKGGVASLTKALAKEWGRY--GIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRT 232 (267)
T ss_dssp CGGGTCCC---SSSCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSSC
T ss_pred CcchhccC---CCCChhHHHHHHHHHHHHHHHHHHhccc--CeEEEEEEeccCccccccccccChHHHHHHHhhCCCCCC
Confidence 988 7655 5667899999999999999999999988 899999999999999865321 13455667
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 248 FTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+|+++|+.+++++++....++|+.+.+|||+.
T Consensus 233 ~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~~ 265 (267)
T 1vl8_A 233 GVPEDLKGVAVFLASEEAKYVTGQIIFVDGGWT 265 (267)
T ss_dssp BCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred cCHHHHHHHHHHHcCccccCCcCCeEEECCCCC
Confidence 899999999999999888899999999999964
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-42 Score=291.67 Aligned_cols=238 Identities=18% Similarity=0.181 Sum_probs=205.0
Q ss_pred cccccCcEEEEecCC-CchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC-CCceeEEEeeCCChhHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGAS-RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-PERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 23 ~~~~~gk~vlItGas-~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~-~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
.++++||++|||||+ +|||+++|++|+++|++ |++++|+.++.+...+.+.+. +.++.++++|++|++++++++++
T Consensus 17 ~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (266)
T 3o38_A 17 HGLLKGKVVLVTAAAGTGIGSTTARRALLEGAD--VVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQ 94 (266)
T ss_dssp CSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCchHHHHHHHHHHCCCE--EEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHH
Confidence 456899999999998 59999999999999988 999999998877655555433 46899999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.++++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.+ ++||++||.
T Consensus 95 ~~~~~g~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-----~~iv~~sS~ 162 (266)
T 3o38_A 95 TVEKAGRLDVLVNNAGLGG-------QTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHG-----GVIVNNASV 162 (266)
T ss_dssp HHHHHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCC-----EEEEEECCG
T ss_pred HHHHhCCCcEEEECCCcCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-----eEEEEeCCH
Confidence 9999999999999999875 5667788899999999999999999999999999876332 499999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc---------cCCCCCCCCChH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ---------RNVPEGKLFTKE 251 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~---------~~~~~~~~~~~~ 251 (282)
.+..+ .++...|+++|++++.|+++++.|+++. +|+||+|+||+++|++.+... ...+..+..+|+
T Consensus 163 ~~~~~---~~~~~~Y~~sKaa~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 237 (266)
T 3o38_A 163 LGWRA---QHSQSHYAAAKAGVMALTRCSAIEAVEF--GVRINAVSPSIARHKFLEKTSSSELLDRLASDEAFGRAAEPW 237 (266)
T ss_dssp GGTCC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCCCC-----------------CCTTSSCCCHH
T ss_pred HHcCC---CCCCchHHHHHHHHHHHHHHHHHHHHHc--CcEEEEEeCCcccchhhhccCcHHHHHHHHhcCCcCCCCCHH
Confidence 98876 6678899999999999999999999988 899999999999999865422 223445677999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
|+|+.+++++++....++|+.+.+|||+
T Consensus 238 dva~~i~~l~s~~~~~~tG~~i~vdgG~ 265 (266)
T 3o38_A 238 EVAATIAFLASDYSSYMTGEVVSVSSQR 265 (266)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESSCC
T ss_pred HHHHHHHHHcCccccCccCCEEEEcCCc
Confidence 9999999999988899999999999986
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=299.43 Aligned_cols=237 Identities=19% Similarity=0.207 Sum_probs=205.8
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC--cccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN--GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~--~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
.++++||++|||||++|||+++|++|+++|++ |++.+|+.. ..+.+.+++...+.++.++++|++|++++++++++
T Consensus 44 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 121 (294)
T 3r3s_A 44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGAD--VAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHK 121 (294)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHH
Confidence 35689999999999999999999999999998 888888743 33445555556677899999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.++++++|+||||||... ...++.+.+.++|++.+++|+.+++++++++.|.|.++ | +||++||.
T Consensus 122 ~~~~~g~iD~lv~nAg~~~------~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--g------~Iv~isS~ 187 (294)
T 3r3s_A 122 AREALGGLDILALVAGKQT------AIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKG--A------SIITTSSI 187 (294)
T ss_dssp HHHHHTCCCEEEECCCCCC------CCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTT--C------EEEEECCG
T ss_pred HHHHcCCCCEEEECCCCcC------CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC--C------EEEEECCh
Confidence 9999999999999999864 24567788899999999999999999999999998653 2 89999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc----------ccccCCCCCCCCCh
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR----------PFQRNVPEGKLFTK 250 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~----------~~~~~~~~~~~~~~ 250 (282)
.+..+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.. .+....+..+..+|
T Consensus 188 ~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~r~~~p 262 (294)
T 3r3s_A 188 QAYQP---SPHLLDYAATKAAILNYSRGLAKQVAEK--GIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQP 262 (294)
T ss_dssp GGTSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECSBCSHHHHTTTSCGGGSTTTTTTSTTSSCBCG
T ss_pred hhccC---CCCchHHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCcCccccccccCCCHHHHHHHHhcCCCCCCcCH
Confidence 98876 6778899999999999999999999998 899999999999998721 12233455677899
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+|+.+++++++....++|+.+.+|||+.
T Consensus 263 ~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 292 (294)
T 3r3s_A 263 AELAPVYVYLASQESSYVTAEVHGVCGGEH 292 (294)
T ss_dssp GGGHHHHHHHHSGGGTTCCSCEEEESTTCC
T ss_pred HHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 999999999999988999999999999974
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=296.85 Aligned_cols=241 Identities=19% Similarity=0.266 Sum_probs=205.2
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC--CCceeEEEeeCCChhHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF--PERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~--~~~v~~~~~Dls~~~~~~~~~ 98 (282)
...++++||++|||||++|||+++|++|+++|++ |++++|+.++.+...+.+.+. +.++.++++|++|++++++++
T Consensus 6 ~~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 83 (267)
T 1iy8_A 6 SPTTRFTDRVVLITGGGSGLGRATAVRLAAEGAK--LSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYV 83 (267)
T ss_dssp ----CCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHH
T ss_pred CCCccCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHH
Confidence 3446789999999999999999999999999987 999999987766544433322 458999999999999999999
Q ss_pred HHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 99 KSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
+++.++++++|+||||||... ...+..+.+.++|++.+++|+.+++.+++.+.|.|++++.| +||++|
T Consensus 84 ~~~~~~~g~id~lv~nAg~~~------~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g------~iv~is 151 (267)
T 1iy8_A 84 TATTERFGRIDGFFNNAGIEG------KQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSG------MVVNTA 151 (267)
T ss_dssp HHHHHHHSCCSEEEECCCCCC------CCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC------EEEEEC
T ss_pred HHHHHHcCCCCEEEECCCcCC------CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC------EEEEEc
Confidence 999999999999999999864 11566778889999999999999999999999999876654 999999
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------------ccCC
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------------QRNV 242 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------------~~~~ 242 (282)
|..+..+ .++...|+++|++++.|+++++.|++++ +|+||+|+||+++|++.+.. ....
T Consensus 152 S~~~~~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (267)
T 1iy8_A 152 SVGGIRG---IGNQSGYAAAKHGVVGLTRNSAVEYGRY--GIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN 226 (267)
T ss_dssp CGGGTSB---CSSBHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred chhhccC---CCCCccHHHHHHHHHHHHHHHHHHHHhc--CeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccC
Confidence 9988766 5677899999999999999999999988 89999999999999874321 1123
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 243 PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+..+..+|+++|+.+++++++....++|+.+.+||++.
T Consensus 227 p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 264 (267)
T 1iy8_A 227 PSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQS 264 (267)
T ss_dssp TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred CCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 44567799999999999998878899999999999864
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=296.12 Aligned_cols=244 Identities=22% Similarity=0.326 Sum_probs=208.3
Q ss_pred ccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHH
Q 023441 20 ASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 20 ~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
+...|+++||++|||||++|||+++|++|+++|++ |++++|+.+..++..+.+...+ ++.++++|++|+++++++++
T Consensus 21 ~~~~~~l~~k~vlVTGas~gIG~aia~~L~~~G~~--V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~v~~~~~ 97 (276)
T 2b4q_A 21 MHPYFSLAGRIALVTGGSRGIGQMIAQGLLEAGAR--VFICARDAEACADTATRLSAYG-DCQAIPADLSSEAGARRLAQ 97 (276)
T ss_dssp CCTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEECSCHHHHHHHHHHHTTSS-CEEECCCCTTSHHHHHHHHH
T ss_pred cccccCCCCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcC-ceEEEEeeCCCHHHHHHHHH
Confidence 34557899999999999999999999999999987 9999999877665555444434 78999999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.++++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.. ...++||++||
T Consensus 98 ~~~~~~g~iD~lvnnAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~--~~~g~iV~isS 168 (276)
T 2b4q_A 98 ALGELSARLDILVNNAGTSW-------GAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASA--ENPARVINIGS 168 (276)
T ss_dssp HHHHHCSCCSEEEECCCCCC-------CCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCS--SSCEEEEEECC
T ss_pred HHHHhcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCC--CCCCEEEEECC
Confidence 99999999999999999874 4456677889999999999999999999999999765430 11249999999
Q ss_pred cccccCCCCCCCcc-cchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------c--CCCCCCCC
Q 023441 180 RVGSIGDNRLGGWH-SYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------R--NVPEGKLF 248 (282)
Q Consensus 180 ~~~~~~~~~~~~~~-~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~--~~~~~~~~ 248 (282)
..+..+ .+... .|++||++++.|+++++.|+++. +|+||+|+||+++|++..... . ..+..+..
T Consensus 169 ~~~~~~---~~~~~~~Y~asK~a~~~~~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~ 243 (276)
T 2b4q_A 169 VAGISA---MGEQAYAYGPSKAALHQLSRMLAKELVGE--HINVNVIAPGRFPSRMTRHIANDPQALEADSASIPMGRWG 243 (276)
T ss_dssp GGGTCC---CCCSCTTHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCCCSTTTHHHHHCHHHHHHHHHTSTTSSCC
T ss_pred HHHcCC---CCCCccccHHHHHHHHHHHHHHHHHhccc--CeEEEEEEeccCcCcchhhcchhHHHHHHhhcCCCCCCcC
Confidence 988766 45556 89999999999999999999988 899999999999999865321 1 34556678
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+++|+.+++++++....++|+.+.+||++.
T Consensus 244 ~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 275 (276)
T 2b4q_A 244 RPEEMAALAISLAGTAGAYMTGNVIPIDGGFH 275 (276)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHhCccccCCCCCEEEeCCCcc
Confidence 99999999999999888899999999999863
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-42 Score=295.00 Aligned_cols=239 Identities=23% Similarity=0.278 Sum_probs=203.5
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..++++||++|||||++|||+++|++|+++|++ |++++|+.+.+++..+.+...+.++.++++|++|+++++++++++
T Consensus 15 ~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 92 (273)
T 1ae1_A 15 GRWSLKGTTALVTGGSKGIGYAIVEELAGLGAR--VYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTV 92 (273)
T ss_dssp -CCCCTTCEEEEESCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCCEEEEECCcchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 457789999999999999999999999999987 999999987766655555445668999999999999999999999
Q ss_pred HHHc-CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 102 KEKY-GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 102 ~~~~-~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
.+.+ +++|+||||||... ..+..+.+.++|++.+++|+.+++++++++.|.|++++.| +||++||.
T Consensus 93 ~~~~~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g------~iv~isS~ 159 (273)
T 1ae1_A 93 AHVFDGKLNILVNNAGVVI-------HKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNG------NVIFLSSI 159 (273)
T ss_dssp HHHTTSCCCEEEECCCCCC-------CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSE------EEEEECCG
T ss_pred HHHcCCCCcEEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc------EEEEEcCH
Confidence 9999 99999999999874 4556677889999999999999999999999999876543 99999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------------CCCCCC
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------------NVPEGK 246 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------------~~~~~~ 246 (282)
.+..+ .++...|+++|++++.|+++++.|+++. +|+||+|+||+++|++.+.... ..+..+
T Consensus 160 ~~~~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~~r 234 (273)
T 1ae1_A 160 AGFSA---LPSVSLYSASKGAINQMTKSLACEWAKD--NIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGR 234 (273)
T ss_dssp GGTSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBC-------------CHHHHHHHHHHSTTCS
T ss_pred hhcCC---CCCcchhHHHHHHHHHHHHHHHHHHhhc--CcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCCCCC
Confidence 88766 5677899999999999999999999988 8999999999999998653211 134456
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 247 LFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
..+|+++|+.+.+++++....++|+.+.+|||+.
T Consensus 235 ~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 268 (273)
T 1ae1_A 235 AGKPQEVSALIAFLCFPAASYITGQIIWADGGFT 268 (273)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CcCHHHHHHHHHHHhCccccCcCCCEEEECCCcc
Confidence 7799999999999999888899999999999864
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=297.25 Aligned_cols=236 Identities=22% Similarity=0.329 Sum_probs=199.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC--C-CceeEEEeeCCChhHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF--P-ERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~--~-~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
++++||++|||||++|||+++|++|+++|++ |++++|+.+++++..+.+... + .++.++++|++|.+++++++++
T Consensus 3 ~~~~~k~~lVTGas~GIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 80 (250)
T 3nyw_A 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYR--VVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKD 80 (250)
T ss_dssp --CCCCEEEEESTTSHHHHHHHHHHHHHTCE--EEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHH
Confidence 4678999999999999999999999999987 999999998877655444322 2 5889999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.++++++|+||||||... ..+. +.+.++|++.+++|+.+++.+++.+.|.|++++.| +||++||.
T Consensus 81 ~~~~~g~iD~lvnnAg~~~-------~~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g------~iv~isS~ 146 (250)
T 3nyw_A 81 IHQKYGAVDILVNAAAMFM-------DGSL-SEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNG------YIFNVASR 146 (250)
T ss_dssp HHHHHCCEEEEEECCCCCC-------CCCC-SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECC-
T ss_pred HHHhcCCCCEEEECCCcCC-------CCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe------EEEEEccH
Confidence 9999999999999999875 3344 66788999999999999999999999999876654 99999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNI 260 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 260 (282)
.+..+ .+....|++||++++.|+++++.|+++. +|+||+|+||+++|++.+......+.....+|+++|+.++++
T Consensus 147 ~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~p~dva~~v~~l 221 (250)
T 3nyw_A 147 AAKYG---FADGGIYGSTKFALLGLAESLYRELAPL--GIRVTTLCPGWVNTDMAKKAGTPFKDEEMIQPDDLLNTIRCL 221 (250)
T ss_dssp ---------CCTTHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESSBCSHHHHHTTCCSCGGGSBCHHHHHHHHHHH
T ss_pred HhcCC---CCCCcchHHHHHHHHHHHHHHHHHhhhc--CcEEEEEecCcccCchhhhcCCCcccccCCCHHHHHHHHHHH
Confidence 98875 3447899999999999999999999998 899999999999999887666666667788999999999999
Q ss_pred HhhcC-CCCCCceeecCCccc
Q 023441 261 INNIK-SHDNGKFFAWDGQEI 280 (282)
Q Consensus 261 ~~~~~-~~~~g~~~~~d~~~~ 280 (282)
++... ..+++..+.+||+..
T Consensus 222 ~s~~~~~~~~~~~i~vd~~~~ 242 (250)
T 3nyw_A 222 LNLSENVCIKDIVFEMKKSII 242 (250)
T ss_dssp HTSCTTEECCEEEEEEHHHHH
T ss_pred HcCCCceEeeEEEEEeecccc
Confidence 98654 577888888998764
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=298.23 Aligned_cols=236 Identities=22% Similarity=0.249 Sum_probs=207.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc-cccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA-TGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~-~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+++||++|||||++|||+++|++|+++|++ |++++|+.+.. +...+.+...+.++.++++|++|+++++++++++.
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 120 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGAN--IAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETV 120 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999999999988 99999987643 33455555667799999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|+||||||... +..++.+.+.++|++.+++|+.+++++++.+.|.|++. ++||++||..+
T Consensus 121 ~~~g~iD~lvnnAg~~~------~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--------g~iv~isS~~~ 186 (291)
T 3ijr_A 121 RQLGSLNILVNNVAQQY------PQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQG--------DVIINTASIVA 186 (291)
T ss_dssp HHHSSCCEEEECCCCCC------CCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTT--------CEEEEECCTHH
T ss_pred HHcCCCCEEEECCCCcC------CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhC--------CEEEEEechHh
Confidence 99999999999999864 24567778899999999999999999999999998653 28999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc---------cccCCCCCCCCChHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP---------FQRNVPEGKLFTKEFS 253 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~---------~~~~~~~~~~~~~~~~ 253 (282)
..+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++... +....+..+..+|+|+
T Consensus 187 ~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~p~dv 261 (291)
T 3ijr_A 187 YEG---NETLIDYSATKGAIVAFTRSLSQSLVQK--GIRVNGVAPGPIWTPLIPSSFDEKKVSQFGSNVPMQRPGQPYEL 261 (291)
T ss_dssp HHC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECSBCSTHHHHHSCHHHHHHTTTTSTTSSCBCGGGT
T ss_pred cCC---CCCChhHHHHHHHHHHHHHHHHHHHhhc--CEEEEEEeeCCCcCCcccccCCHHHHHHHHccCCCCCCcCHHHH
Confidence 876 5677899999999999999999999998 8999999999999997532 2334566777899999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+.+++++++....++|+.+.+|||++
T Consensus 262 A~~v~~L~s~~~~~itG~~i~vdGG~~ 288 (291)
T 3ijr_A 262 APAYVYLASSDSSYVTGQMIHVNGGVI 288 (291)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESSSCC
T ss_pred HHHHHHHhCCccCCCcCCEEEECCCcc
Confidence 999999999988999999999999875
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-42 Score=292.64 Aligned_cols=240 Identities=22% Similarity=0.314 Sum_probs=199.0
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.|+++||++|||||++|||+++|++|+++|++ |++++|+.++++++.+.+ +.++.++++|++|.++++++++++.
T Consensus 4 ~m~l~~k~vlITGas~gIG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (261)
T 3n74_A 4 SMSLEGKVALITGAGSGFGEGMAKRFAKGGAK--VVIVDRDKAGAERVAGEI---GDAALAVAADISKEADVDAAVEAAL 78 (261)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHH---CTTEEEEECCTTSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEcCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999987 999999988776554433 5689999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|+||||||... ...+..+.+.++|++.+++|+.+++++++.+.|.|.+++.+ ...++||++||..+
T Consensus 79 ~~~g~id~li~~Ag~~~------~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~--~~~~~iv~isS~~~ 150 (261)
T 3n74_A 79 SKFGKVDILVNNAGIGH------KPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAK--GQECVILNVASTGA 150 (261)
T ss_dssp HHHSCCCEEEECCCCCC------CSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHT--TCCEEEEEECCTTT
T ss_pred HhcCCCCEEEECCccCC------CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC--CCCeEEEEeCchhh
Confidence 99999999999999874 24456677889999999999999999999999999865310 11248999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc------------cCCCCCCCCCh
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ------------RNVPEGKLFTK 250 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~------------~~~~~~~~~~~ 250 (282)
..+ .+....|+++|++++.|+++++.|++++ +|+|++|+||+++|++...+. ...+..+..+|
T Consensus 151 ~~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (261)
T 3n74_A 151 GRP---RPNLAWYNATKGWVVSVTKALAIELAPA--KIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRDSIPMGRLLKP 225 (261)
T ss_dssp TSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEEC-------------------------CTTSSCCCH
T ss_pred cCC---CCCccHHHHHHHHHHHHHHHHHHHhhhc--CcEEEEEecCcccChhhhhhcccCcHHHHHHHhhcCCcCCCcCH
Confidence 766 6777889999999999999999999988 899999999999999866432 22344567899
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++|+.+.+++++....++|+.+.+|||+.
T Consensus 226 ~dva~~~~~l~s~~~~~itG~~i~vdgG~~ 255 (261)
T 3n74_A 226 DDLAEAAAFLCSPQASMITGVALDVDGGRS 255 (261)
T ss_dssp HHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHHcCCcccCcCCcEEEecCCcc
Confidence 999999999999888999999999999974
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-42 Score=292.47 Aligned_cols=238 Identities=21% Similarity=0.255 Sum_probs=207.5
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.|+++||++|||||++|||++++++|+++|++ |++++|+.+..+...+.+...+.++.++++|++|+++++++++++.
T Consensus 4 ~~~l~~k~vlVTGas~giG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (260)
T 2ae2_A 4 RWNLEGCTALVTGGSRGIGYGIVEELASLGAS--VYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVA 81 (260)
T ss_dssp TTCCTTCEEEEESCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999987 9999999877666555444446689999999999999999999999
Q ss_pred HHc-CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 103 EKY-GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 103 ~~~-~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
+++ +++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..
T Consensus 82 ~~~~g~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g------~iv~isS~~ 148 (260)
T 2ae2_A 82 NHFHGKLNILVNNAGIVI-------YKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERG------NVVFISSVS 148 (260)
T ss_dssp HHTTTCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSE------EEEEECCGG
T ss_pred HHcCCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc------EEEEEcchh
Confidence 999 89999999999874 4566778889999999999999999999999999876654 999999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------ccCCCCCCCC
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------QRNVPEGKLF 248 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------~~~~~~~~~~ 248 (282)
+..+ .++...|++||++++.|+++++.|++++ +|++|+|+||+++|++.... ....+..+..
T Consensus 149 ~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (260)
T 2ae2_A 149 GALA---VPYEAVYGATKGAMDQLTRCLAFEWAKD--NIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMG 223 (260)
T ss_dssp GTSC---CTTCHHHHHHHHHHHHHHHHHHHHTGGG--TEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTCSCB
T ss_pred hccC---CCCcchHHHHHHHHHHHHHHHHHHHhhc--CcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcCCCCCCC
Confidence 8766 5677899999999999999999999988 89999999999999874321 1123455678
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+++|+.+.+++++....++|+.+.+||++.
T Consensus 224 ~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 255 (260)
T 2ae2_A 224 EPKELAAMVAFLCFPAASYVTGQIIYVDGGLM 255 (260)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CHHHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 99999999999998877899999999999864
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-42 Score=292.12 Aligned_cols=242 Identities=19% Similarity=0.266 Sum_probs=206.3
Q ss_pred cccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEee-cCCCcccccccccccCCCceeEEEeeCCChhHHHHH
Q 023441 19 SASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 19 ~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~-r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~ 97 (282)
+...+.+.++|++|||||++|||+++|++|+++|++ |++.+ |+.+..+...+.+...+.++.++++|++|.++++++
T Consensus 4 ~~~~~~~~~~k~vlITGas~giG~~ia~~l~~~G~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 81 (256)
T 3ezl_A 4 HHHHHMVMSQRIAYVTGGMGGIGTSICQRLHKDGFR--VVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQA 81 (256)
T ss_dssp ---------CEEEEETTTTSHHHHHHHHHHHHTTEE--EEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHH
T ss_pred CCCCCCCCCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHH
Confidence 344567889999999999999999999999999987 77777 666666665555556677899999999999999999
Q ss_pred HHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 98 AKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
++++.++++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++
T Consensus 82 ~~~~~~~~g~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g------~iv~i 148 (256)
T 3ezl_A 82 FDKVKAEVGEIDVLVNNAGITR-------DVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWG------RIINI 148 (256)
T ss_dssp HHHHHHHTCCEEEEEECCCCCC-------CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEE
T ss_pred HHHHHHhcCCCCEEEECCCCCC-------CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC------EEEEE
Confidence 9999999999999999999875 4566778889999999999999999999999999887654 99999
Q ss_pred eccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCC
Q 023441 178 SARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFT 249 (282)
Q Consensus 178 ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~ 249 (282)
||..+..+ .++...|++||++++.|+++++.|+++. +|++++|+||+++|++.+... ...+..+..+
T Consensus 149 sS~~~~~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (256)
T 3ezl_A 149 SSVNGQKG---QFGQTNYSTAKAGIHGFTMSLAQEVATK--GVTVNTVSPGYIGTDMVKAIRPDVLEKIVATIPVRRLGS 223 (256)
T ss_dssp CCCCGGGS---CSCCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCHHHHTSCHHHHHHHHHHSTTSSCBC
T ss_pred cchhhccC---CCCCcccHHHHHHHHHHHHHHHHHHHHh--CCEEEEEEECcccCccccccCHHHHHHHHhcCCCCCCcC
Confidence 99988877 6778899999999999999999999988 899999999999999865432 2345567779
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+++|+.+++++++....++|+.+.+|||+.
T Consensus 224 ~~dva~~~~~l~s~~~~~~tG~~i~vdgG~~ 254 (256)
T 3ezl_A 224 PDEIGSIVAWLASEESGFSTGADFSLNGGLH 254 (256)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred HHHHHHHHHHHhCCcccCCcCcEEEECCCEe
Confidence 9999999999999888999999999999874
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=286.60 Aligned_cols=231 Identities=21% Similarity=0.273 Sum_probs=201.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||++|||||++|||++++++|+++|++ |++++|+.++.+...+.. + +.++++|++|+++++++++++.+
T Consensus 1 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~--~~~~~~D~~~~~~~~~~~~~~~~ 73 (245)
T 1uls_A 1 MRLKDKAVLITGAAHGIGRATLELFAKEGAR--LVACDIEEGPLREAAEAV---G--AHPVVMDVADPASVERGFAEALA 73 (245)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHTT---T--CEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHc---C--CEEEEecCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999988 999999876655433322 2 78899999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||.. .
T Consensus 74 ~~g~id~lvn~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g------~iv~isS~~-~ 139 (245)
T 1uls_A 74 HLGRLDGVVHYAGITR-------DNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPG------SIVLTASRV-Y 139 (245)
T ss_dssp HHSSCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCE------EEEEECCGG-G
T ss_pred HcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC------EEEEEccch-h
Confidence 9999999999999874 4566778889999999999999999999999999876554 999999987 5
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFSVQ 255 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~a~ 255 (282)
.+ .++...|+++|++++.|+++++.|+++. +|++|+|+||+++|++.+... ...+..+..+|+++|+
T Consensus 140 ~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~ 214 (245)
T 1uls_A 140 LG---NLGQANYAASMAGVVGLTRTLALELGRW--GIRVNTLAPGFIETRMTAKVPEKVREKAIAATPLGRAGKPLEVAY 214 (245)
T ss_dssp GC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCTTCSCBCHHHHHH
T ss_pred cC---CCCchhHHHHHHHHHHHHHHHHHHHhHh--CeEEEEEEeCcCcCcchhhcCHHHHHHHHhhCCCCCCcCHHHHHH
Confidence 55 5667899999999999999999999988 899999999999999865422 1234566789999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCccc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+++++++....++|+.+.+||++.
T Consensus 215 ~v~~l~s~~~~~~tG~~~~vdgG~~ 239 (245)
T 1uls_A 215 AALFLLSDESSFITGQVLFVDGGRT 239 (245)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHhCchhcCCcCCEEEECCCcc
Confidence 9999999888899999999999964
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-42 Score=292.09 Aligned_cols=235 Identities=18% Similarity=0.211 Sum_probs=199.6
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc-ccccccccccC-CCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG-ATGLLDLKNRF-PERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~-~~~~~~~~~~~-~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++||++|||||++|||++++++|+++|++ |++++|+.+. .+.+.+.+... +.++.++++|++|+++++++++++.+
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 79 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGAD--IVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCE--EEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999999999988 9999998876 55544443322 56789999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..+.
T Consensus 80 ~~g~iD~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g------~iv~isS~~~~ 146 (260)
T 1x1t_A 80 QMGRIDILVNNAGIQH-------TALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFG------RIINIASAHGL 146 (260)
T ss_dssp HHSCCSEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGGT
T ss_pred hcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------EEEEECcHHhC
Confidence 9999999999999864 4566778889999999999999999999999999876543 99999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------------------CCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------------------NVP 243 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------------------~~~ 243 (282)
.+ .++...|++||++++.|+++++.|+++. +|++|+|+||+++|++.+.... ..+
T Consensus 147 ~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 221 (260)
T 1x1t_A 147 VA---SANKSAYVAAKHGVVGFTKVTALETAGQ--GITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQP 221 (260)
T ss_dssp SC---CTTCHHHHHHHHHHHHHHHHHHHHHTTT--TEEEEEEEECCBCC------------------------CHHHHCT
T ss_pred cC---CCCCchHHHHHHHHHHHHHHHHHHhccC--CEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhccCC
Confidence 66 5677899999999999999999999988 8999999999999998653211 123
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 244 EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
..+..+|+++|+.+.+++++....++|+.+.+||++.
T Consensus 222 ~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgG~~ 258 (260)
T 1x1t_A 222 SLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGWT 258 (260)
T ss_dssp TCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHhChhhcCCCCCEEEECCCcc
Confidence 4456799999999999999878899999999999864
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-42 Score=303.42 Aligned_cols=237 Identities=19% Similarity=0.224 Sum_probs=206.6
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-------cccccccCCCceeEEEeeCCChhHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-------LLDLKNRFPERLDVLQLDLTVESTI 94 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-------~~~~~~~~~~~v~~~~~Dls~~~~~ 94 (282)
...+++||++|||||++|||+++|++|+++|++ |++++|+.++.++ ..+.+...+.++.++++|++|++++
T Consensus 39 ~~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~--Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v 116 (346)
T 3kvo_A 39 NTGRLAGCTVFITGASRGIGKAIALKAAKDGAN--IVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQI 116 (346)
T ss_dssp CCSTTTTCEEEEETTTSHHHHHHHHHHHTTTCE--EEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHH
T ss_pred cCCCCCCCEEEEeCCChHHHHHHHHHHHHCCCE--EEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHH
Confidence 457889999999999999999999999999987 9999999886433 2334445567899999999999999
Q ss_pred HHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEE
Q 023441 95 EASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVV 174 (282)
Q Consensus 95 ~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~i 174 (282)
+++++++.+++|++|+||||||+.. ..+..+.+.++|++.+++|+.+++++++++.|.|++++.| +|
T Consensus 117 ~~~~~~~~~~~g~iDilVnnAG~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g------~I 183 (346)
T 3kvo_A 117 SAAVEKAIKKFGGIDILVNNASAIS-------LTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVA------HI 183 (346)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCC-------CCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSC------EE
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCC------EE
Confidence 9999999999999999999999875 5566778889999999999999999999999999987765 99
Q ss_pred EEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEeccc-ccCCCCcccccCCCCCCCCChHHH
Q 023441 175 ANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGT-VDTDLSRPFQRNVPEGKLFTKEFS 253 (282)
Q Consensus 175 v~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~-v~t~~~~~~~~~~~~~~~~~~~~~ 253 (282)
|++||..+..+. +.++...|++||++++.|+++++.|++ . +|+||+|+||+ ++|++.+.+....+..+..+|+++
T Consensus 184 V~iSS~~~~~~~-~~~~~~~Y~aSKaal~~l~~~la~e~~-~--gIrvn~v~PG~~i~T~~~~~~~~~~~~~r~~~pedv 259 (346)
T 3kvo_A 184 LNISPPLNLNPV-WFKQHCAYTIAKYGMSMYVLGMAEEFK-G--EIAVNALWPKTAIHTAAMDMLGGPGIESQCRKVDII 259 (346)
T ss_dssp EEECCCCCCCGG-GTSSSHHHHHHHHHHHHHHHHHHHHTT-T--TCEEEEEECSBCBCCHHHHHHCC--CGGGCBCTHHH
T ss_pred EEECCHHHcCCC-CCCCchHHHHHHHHHHHHHHHHHHHhc-C--CcEEEEEeCCCccccHHHHhhccccccccCCCHHHH
Confidence 999999876542 245678999999999999999999998 6 89999999995 999987766655666677899999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
|+.+++++++ ...++|+++ +||+.
T Consensus 260 A~~v~~L~s~-~~~itG~~i-vdgg~ 283 (346)
T 3kvo_A 260 ADAAYSIFQK-PKSFTGNFV-IDENI 283 (346)
T ss_dssp HHHHHHHHTS-CTTCCSCEE-EHHHH
T ss_pred HHHHHHHHhc-CCCCCceEE-ECCcE
Confidence 9999999999 889999998 78874
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=290.55 Aligned_cols=237 Identities=21% Similarity=0.239 Sum_probs=199.4
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..+++||++|||||++|||+++|++|+++|++ |++++|+.++++...+.+...+.++.++.+|++|+++++++++++.
T Consensus 24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 101 (262)
T 3rkr_A 24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGAR--VVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVL 101 (262)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHH
Confidence 35588999999999999999999999999988 9999999988877666666667789999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|+||||||... ...+..+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..+
T Consensus 102 ~~~g~id~lv~~Ag~~~------~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g------~iv~isS~~~ 169 (262)
T 3rkr_A 102 AAHGRCDVLVNNAGVGW------FGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRG------HIINISSLAG 169 (262)
T ss_dssp HHHSCCSEEEECCCCCC------CSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCC------EEEEECSSCS
T ss_pred HhcCCCCEEEECCCccC------CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCc------eEEEEechhh
Confidence 99999999999999843 24567778889999999999999999999999999887665 9999999998
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHh
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIIN 262 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 262 (282)
..+ .++...|+++|++++.|+++++.|+++. +|++++|+||+++|++........+.....+|+++|+.++++++
T Consensus 170 ~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~p~dvA~~v~~l~s 244 (262)
T 3rkr_A 170 KNP---VADGAAYTASKWGLNGLMTSAAEELRQH--QVRVSLVAPGSVRTEFGVGLSAKKSALGAIEPDDIADVVALLAT 244 (262)
T ss_dssp SCC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCC----------------CCCHHHHHHHHHHHHT
T ss_pred cCC---CCCCchHHHHHHHHHHHHHHHHHHhhhc--CcEEEEEecCCCcCCcccccccccccccCCCHHHHHHHHHHHhc
Confidence 876 6777899999999999999999999988 89999999999999998776666666777899999999999999
Q ss_pred hcCCCCCCceeecCCc
Q 023441 263 NIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 263 ~~~~~~~g~~~~~d~~ 278 (282)
......+|+.+..+.+
T Consensus 245 ~~~~~~~g~~~i~p~~ 260 (262)
T 3rkr_A 245 QADQSFISEVLVRPTL 260 (262)
T ss_dssp CCTTCCEEEEEEECCC
T ss_pred CccccccCcEEecccc
Confidence 8888888888876544
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-42 Score=296.12 Aligned_cols=241 Identities=19% Similarity=0.189 Sum_probs=202.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEee-cCCCcccccccccc-cCCCceeEEEeeCCChh---------
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDLKN-RFPERLDVLQLDLTVES--------- 92 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~-r~~~~~~~~~~~~~-~~~~~v~~~~~Dls~~~--------- 92 (282)
++++||++|||||++|||+++|++|+++|++ |++++ |+.+..+...+.+. ..+.++.++++|++|++
T Consensus 5 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~--V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (291)
T 1e7w_A 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYA--VCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADG 82 (291)
T ss_dssp ---CCCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCe--EEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCccccccccccc
Confidence 4688999999999999999999999999987 99999 98877666554443 44678999999999999
Q ss_pred --------HHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccc--------------hhhhhhhhhhhhcHHH
Q 023441 93 --------TIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVE--------------KSSLMLAYEVNAVGPI 150 (282)
Q Consensus 93 --------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~n~~~~~ 150 (282)
+++++++++.++++++|+||||||+.. ..++.+.+ .++|++.+++|+.+++
T Consensus 83 ~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~ 155 (291)
T 1e7w_A 83 SAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFY-------PTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPY 155 (291)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCC-------CCCCCC-------------HHHHHHHHHHHHHHTHHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCC-------CCChhhcCccccccccccccccHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999874 33445555 7899999999999999
Q ss_pred HHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccc
Q 023441 151 LVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTV 230 (282)
Q Consensus 151 ~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v 230 (282)
.+++.+.|.|.+++.......++||++||..+..+ .++...|++||++++.|+++++.|++++ +|+||+|+||++
T Consensus 156 ~l~~~~~~~m~~~~~~~~~~~g~Iv~isS~~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v 230 (291)
T 1e7w_A 156 FLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQP---LLGYTIYTMAKGALEGLTRSAALELAPL--QIRVNGVGPGLS 230 (291)
T ss_dssp HHHHHHHHHHHTSCGGGSCSCEEEEEECCTTTTSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESSB
T ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEechhhcCC---CCCCchhHHHHHHHHHHHHHHHHHHHhc--CeEEEEEeeCCc
Confidence 99999999998765100011249999999988766 6778899999999999999999999988 899999999999
Q ss_pred cCCCCccc--------ccCCCCC-CCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 231 DTDLSRPF--------QRNVPEG-KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 231 ~t~~~~~~--------~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|++ + . ....+.. +..+|+++|+.+++++++....++|+.+.+|||+.
T Consensus 231 ~T~~-~-~~~~~~~~~~~~~p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~ 287 (291)
T 1e7w_A 231 VLVD-D-MPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 287 (291)
T ss_dssp CCGG-G-SCHHHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred cCCc-c-CCHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCCcccCccCcEEEECCCcc
Confidence 9998 3 2 1123445 67899999999999999888899999999999863
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-42 Score=292.40 Aligned_cols=235 Identities=18% Similarity=0.259 Sum_probs=204.3
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEee-cCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~-r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++|++|||||++|||+++|++|+++|++ |++.+ |+.+..+...+.+...+.++.++++|++|.++++++++++.++
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 100 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDAGMA--VAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLAD 100 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTTTCE--EEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 67999999999999999999999999988 88888 4444444444455555678999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||... ..+..+.+.++|+..+++|+.+++++++.+.|.|.+++.| +||++||..+..
T Consensus 101 ~g~id~li~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g------~iv~isS~~~~~ 167 (269)
T 3gk3_A 101 FGKVDVLINNAGITR-------DATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFG------RIVNIGSVNGSR 167 (269)
T ss_dssp HSCCSEEEECCCCCC-------CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCHHHHH
T ss_pred cCCCCEEEECCCcCC-------CcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC------EEEEeCChhhcc
Confidence 999999999999875 4566778889999999999999999999999999876654 999999998887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc---------cCCCCCCCCChHHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ---------RNVPEGKLFTKEFSVQ 255 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~---------~~~~~~~~~~~~~~a~ 255 (282)
+ .++...|++||++++.|+++++.|+++. +|+|++|+||+++|++.+... ...+..+..+|+++|+
T Consensus 168 ~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~ 242 (269)
T 3gk3_A 168 G---AFGQANYASAKAGIHGFTKTLALETAKR--GITVNTVSPGYLATAMVEAVPQDVLEAKILPQIPVGRLGRPDEVAA 242 (269)
T ss_dssp C---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCTTTTC-------CCSGGGCTTSSCBCHHHHHH
T ss_pred C---CCCcchHHHHHHHHHHHHHHHHHHhhhc--CCEEEEEecCcccchhhhhhchhHHHHHhhhcCCcCCccCHHHHHH
Confidence 6 6678899999999999999999999988 899999999999999876432 2344456679999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCccc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+++++++....++|+.+.+|||+.
T Consensus 243 ~v~~L~s~~~~~itG~~i~vdgG~~ 267 (269)
T 3gk3_A 243 LIAFLCSDDAGFVTGADLAINGGMH 267 (269)
T ss_dssp HHHHHTSTTCTTCCSCEEEESTTSC
T ss_pred HHHHHhCCCcCCeeCcEEEECCCEe
Confidence 9999999888899999999999874
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-42 Score=294.75 Aligned_cols=238 Identities=23% Similarity=0.294 Sum_probs=208.4
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||++|||||++|||++++++|+++|++ |++++|+.+..+...+.+...+.++.++++|++|+++++++++++.++
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 96 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGLR--VFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVER 96 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999987 999999987766555555445668999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhh--hhcCCCCCccceeEEEEeecccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPL--LKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~--l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|. |.+++. ++||++||..+
T Consensus 97 ~g~iD~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~------g~iv~isS~~~ 163 (277)
T 2rhc_B 97 YGPVDVLVNNAGRPG-------GGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGT------GRIVNIASTGG 163 (277)
T ss_dssp TCSCSEEEECCCCCC-------CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTE------EEEEEECCGGG
T ss_pred hCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCC------eEEEEECcccc
Confidence 999999999999874 455677888999999999999999999999998 876543 39999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-------------------cCCC
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-------------------RNVP 243 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-------------------~~~~ 243 (282)
..+ .+....|+++|++++.|+++++.|+++. +|++|+|+||+++|++..... ...+
T Consensus 164 ~~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 238 (277)
T 2rhc_B 164 KQG---VVHAAPYSASKHGVVGFTKALGLELART--GITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVP 238 (277)
T ss_dssp TSC---CTTCHHHHHHHHHHHHHHHHHHHHHTTT--EEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHST
T ss_pred ccC---CCCCccHHHHHHHHHHHHHHHHHHHHHh--CcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHhcCC
Confidence 766 5677899999999999999999999988 899999999999999754321 1234
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 244 EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
..+..+|+++|+.+++++++....++|+.+.+|||+.+|
T Consensus 239 ~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG~~~~ 277 (277)
T 2rhc_B 239 IGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGGLGNY 277 (277)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCCCC
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCCcccC
Confidence 556789999999999999888889999999999999887
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=293.66 Aligned_cols=234 Identities=19% Similarity=0.231 Sum_probs=202.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC--CCceeEEEeeCCChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF--PERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~--~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
|+++||++|||||++|||+++|++|+++|++ |++++|+.+..++..+.+... +.++.++.+|++|+++++++++
T Consensus 6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 81 (267)
T 3t4x_A 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGAN--VLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIE-- 81 (267)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHH--
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHH--
Confidence 6789999999999999999999999999988 999999988776654444322 3478899999999998877654
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
+++++|+||||||... ..+..+.+.++|++.+++|+.+++.+++.+.|.|.+++.| +||++||..
T Consensus 82 --~~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g------~iv~isS~~ 146 (267)
T 3t4x_A 82 --KYPKVDILINNLGIFE-------PVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEG------RVIFIASEA 146 (267)
T ss_dssp --HCCCCSEEEECCCCCC-------CCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEE------EEEEECCGG
T ss_pred --hcCCCCEEEECCCCCC-------CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC------EEEEEcchh
Confidence 5789999999999875 5567788899999999999999999999999999887654 999999999
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-----------------------
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------------------- 238 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------------------- 238 (282)
+..+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+.+
T Consensus 147 ~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (267)
T 3t4x_A 147 AIMP---SQEMAHYSATKTMQLSLSRSLAELTTGT--NVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKEN 221 (267)
T ss_dssp GTSC---CTTCHHHHHHHHHHHHHHHHHHHHTTTS--EEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHH
T ss_pred hccC---CCcchHHHHHHHHHHHHHHHHHHHhCCC--CeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhcc
Confidence 8876 6778899999999999999999999988 89999999999999864321
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 239 QRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 239 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
.+..+..+..+|+|+|+.+++++++....++|+.+.+|||+..
T Consensus 222 ~~~~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~~ 264 (267)
T 3t4x_A 222 RPTSIIQRLIRPEEIAHLVTFLSSPLSSAINGSALRIDGGLVR 264 (267)
T ss_dssp CTTCSSCSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTCSC
T ss_pred CCcccccCccCHHHHHHHHHHHcCccccCccCCeEEECCCccc
Confidence 1123456788999999999999999889999999999999753
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=289.64 Aligned_cols=234 Identities=20% Similarity=0.266 Sum_probs=203.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc--ccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG--ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~--~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+||++|||||++|||++++++|+++|++ |++++|+.+. .+...+.+...+.++.++++|++|+++++++++++.++
T Consensus 1 ~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (258)
T 3a28_C 1 MSKVAMVTGGAQGIGRGISEKLAADGFD--IAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEK 78 (258)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHTCE--EEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3799999999999999999999999987 9999998876 55555555445678999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCC-CCccceeEEEEeeccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGT-GIERDVAVVANLSARVGS 183 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~-g~~~~~~~iv~~ss~~~~ 183 (282)
++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++. | +||++||..+.
T Consensus 79 ~g~iD~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g------~iv~isS~~~~ 145 (258)
T 3a28_C 79 LGGFDVLVNNAGIAQ-------IKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKG------KIINAASIAAI 145 (258)
T ss_dssp HTCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCC------EEEEECCGGGT
T ss_pred hCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCc------EEEEECcchhc
Confidence 999999999999874 456677888999999999999999999999999987654 4 99999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-------------------cCCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-------------------RNVPE 244 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-------------------~~~~~ 244 (282)
.+ .++...|+++|++++.|+++++.|++++ +|+||+|+||+++|++.+... ...+.
T Consensus 146 ~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 220 (258)
T 3a28_C 146 QG---FPILSAYSTTKFAVRGLTQAAAQELAPK--GHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIAL 220 (258)
T ss_dssp SC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTTCTT
T ss_pred cC---CCCchhHHHHHHHHHHHHHHHHHHHHhh--CeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhcCCC
Confidence 66 5677899999999999999999999988 899999999999999754310 12344
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 245 GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+..+|+++|+.+.+++++....++|+.+.+||++.
T Consensus 221 ~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 256 (258)
T 3a28_C 221 GRPSVPEDVAGLVSFLASENSNYVTGQVMLVDGGML 256 (258)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSC
T ss_pred CCccCHHHHHHHHHHHhCcccCCCCCCEEEECCCEe
Confidence 567899999999999999888899999999999864
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=288.29 Aligned_cols=231 Identities=23% Similarity=0.368 Sum_probs=198.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+||++|||||++|||+++|++|+++|+...|++.+|+.+..+.+.+.. +.++.++++|++|+++++++++++.+++|
T Consensus 1 Mgk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 77 (254)
T 3kzv_A 1 MGKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY---GDRFFYVVGDITEDSVLKQLVNAAVKGHG 77 (254)
T ss_dssp -CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH---GGGEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh---CCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 379999999999999999999999985556999999987766544433 46899999999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|+||||||... +..+..+.+.++|++.+++|+.+++++++.+.|.|++++ | +||++||..+..+
T Consensus 78 ~id~lvnnAg~~~------~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g------~iv~isS~~~~~~- 143 (254)
T 3kzv_A 78 KIDSLVANAGVLE------PVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-G------NVVFVSSDACNMY- 143 (254)
T ss_dssp CCCEEEEECCCCC------CCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C------EEEEECCSCCCCS-
T ss_pred CccEEEECCcccC------CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-C------eEEEEcCchhccC-
Confidence 9999999999864 245677788999999999999999999999999998754 3 9999999988876
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC-----------------CCCCCCCC
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN-----------------VPEGKLFT 249 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~-----------------~~~~~~~~ 249 (282)
.++...|++||++++.|+++++.|+ . +|+||+|+||+++|++.+..... .+..+..+
T Consensus 144 --~~~~~~Y~asK~a~~~~~~~la~e~--~--~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 217 (254)
T 3kzv_A 144 --FSSWGAYGSSKAALNHFAMTLANEE--R--QVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLD 217 (254)
T ss_dssp --SCCSHHHHHHHHHHHHHHHHHHHHC--T--TSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHTTC----
T ss_pred --CCCcchHHHHHHHHHHHHHHHHhhc--c--CcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHhcCCcCC
Confidence 6778899999999999999999998 3 89999999999999997654322 12356679
Q ss_pred hHHHHHHHHHHHhhc-CCCCCCceeecCCccc
Q 023441 250 KEFSVQKLLNIINNI-KSHDNGKFFAWDGQEI 280 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~-~~~~~g~~~~~d~~~~ 280 (282)
|+++|+.+++++++. ...++|+.+.+||+++
T Consensus 218 p~dva~~v~~L~s~~~~~~itG~~i~vdg~~~ 249 (254)
T 3kzv_A 218 SSVPATVYAKLALHGIPDGVNGQYLSYNDPAL 249 (254)
T ss_dssp CHHHHHHHHHHHHHCCCGGGTTCEEETTCGGG
T ss_pred cccHHHHHHHHHhhcccCCCCccEEEecCccc
Confidence 999999999999998 4899999999999875
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-42 Score=292.10 Aligned_cols=235 Identities=19% Similarity=0.233 Sum_probs=205.4
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||++|||||++|||++++++|+++|++ |++++|+.+..+...+.+...+.++.++++|++|+++++++++++.+.
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTA--IALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRD 81 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999987 999999987776655555555668999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||... ...++.+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..+..
T Consensus 82 ~g~id~lv~nAg~~~------~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g------~iv~isS~~~~~ 149 (262)
T 1zem_A 82 FGKIDFLFNNAGYQG------AFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYG------RIVNTASMAGVK 149 (262)
T ss_dssp HSCCCEEEECCCCCC------CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCHHHHS
T ss_pred hCCCCEEEECCCCCC------CCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc------EEEEEcchhhcc
Confidence 999999999999862 14566778889999999999999999999999999876543 999999998876
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------c-----------c
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------Q-----------R 240 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------~-----------~ 240 (282)
+ .+....|+++|++++.|+++++.|++++ +|++|+|+||+++|++.... . .
T Consensus 150 ~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (262)
T 1zem_A 150 G---PPNMAAYGTSKGAIIALTETAALDLAPY--NIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIG 224 (262)
T ss_dssp C---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHH
T ss_pred C---CCCCchHHHHHHHHHHHHHHHHHHHHhh--CeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHHHh
Confidence 6 5677899999999999999999999988 89999999999999975431 1 1
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 241 NVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 241 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
..|..+..+|+++|+.+.+++++....++|+.+.+|||
T Consensus 225 ~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG 262 (262)
T 1zem_A 225 SVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262 (262)
T ss_dssp TSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESCC
T ss_pred cCCCCCCcCHHHHHHHHHHHcCchhcCcCCcEEecCCC
Confidence 23456677999999999999998888999999999986
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=293.76 Aligned_cols=239 Identities=16% Similarity=0.188 Sum_probs=199.2
Q ss_pred cccccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 23 ~~~~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
..+++||++|||||+ +|||+++|++|+++|++ |++.+|++...+.+.+..... .++.+++||++|++++++++++
T Consensus 26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~ 102 (293)
T 3grk_A 26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGAE--LAFTYQGDALKKRVEPLAEEL-GAFVAGHCDVADAASIDAVFET 102 (293)
T ss_dssp -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCE--EEEEECSHHHHHHHHHHHHHH-TCEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE--EEEEcCCHHHHHHHHHHHHhc-CCceEEECCCCCHHHHHHHHHH
Confidence 356899999999999 55999999999999988 999999854333333333332 3688999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.++++++|+||||||+..... ...++.+.+.++|++.+++|+.+++++++++.|.|.+. ++||++||.
T Consensus 103 ~~~~~g~iD~lVnnAG~~~~~~---~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--------g~Iv~isS~ 171 (293)
T 3grk_A 103 LEKKWGKLDFLVHAIGFSDKDE---LTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADG--------GSILTLTYY 171 (293)
T ss_dssp HHHHTSCCSEEEECCCCCCHHH---HTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC--------EEEEEEECG
T ss_pred HHHhcCCCCEEEECCccCCccc---ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------CEEEEEeeh
Confidence 9999999999999999863000 02456678889999999999999999999999999752 499999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCCh
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTK 250 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~ 250 (282)
.+..+ .+....|++||++++.|+++++.|++++ +|+||+|+||+++|++..... ...+..+..+|
T Consensus 172 ~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p 246 (293)
T 3grk_A 172 GAEKV---MPNYNVMGVAKAALEASVKYLAVDLGPQ--NIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRRTVTI 246 (293)
T ss_dssp GGTSB---CTTTTHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCCCC------CCHHHHHHHHHHHSTTSSCCCH
T ss_pred hhccC---CCchHHHHHHHHHHHHHHHHHHHHHhHh--CCEEEEEecCCCcchhhhcccchHHHHHHHHhcCCCCCCCCH
Confidence 98876 6778899999999999999999999998 899999999999999865432 13456677899
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++|+.+++++++....++|+.+.+|||+.
T Consensus 247 edvA~~v~~L~s~~~~~itG~~i~vdGG~~ 276 (293)
T 3grk_A 247 DEVGDVGLYFLSDLSRSVTGEVHHADSGYH 276 (293)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHcCccccCCcceEEEECCCcc
Confidence 999999999999888999999999999975
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=291.03 Aligned_cols=227 Identities=22% Similarity=0.330 Sum_probs=199.5
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++++||++|||||++|||+++|++|+++|++ |++++|+.+..+.. ..+++|++|.++++++++++.
T Consensus 23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~--V~~~~r~~~~~~~~-----------~~~~~Dv~~~~~~~~~~~~~~ 89 (266)
T 3uxy_A 23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGAR--VAVADRAVAGIAAD-----------LHLPGDLREAAYADGLPGAVA 89 (266)
T ss_dssp ---CTTCEEEESSTTSHHHHHHHHHHHHTTCE--EEECSSCCTTSCCS-----------EECCCCTTSHHHHHHHHHHHH
T ss_pred hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHhh-----------hccCcCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999987 99999987765422 334799999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|+||||||+.. ..+..+.+.++|++.+++|+.+++++++++.|.|++++.| +||++||..+
T Consensus 90 ~~~g~iD~lvnnAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g------~iv~isS~~~ 156 (266)
T 3uxy_A 90 AGLGRLDIVVNNAGVIS-------RGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGG------AIVNVASCWG 156 (266)
T ss_dssp HHHSCCCEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCSBT
T ss_pred HhcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------EEEEECCHHh
Confidence 99999999999999975 5677788899999999999999999999999999886654 9999999998
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc---------------cccCCCCCCC
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP---------------FQRNVPEGKL 247 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~---------------~~~~~~~~~~ 247 (282)
..+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+. +....+..+.
T Consensus 157 ~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~ 231 (266)
T 3uxy_A 157 LRP---GPGHALYCLTKAALASLTQCMGMDHAPQ--GIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVPLGRI 231 (266)
T ss_dssp TBC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTTSTTSSC
T ss_pred CCC---CCCChHHHHHHHHHHHHHHHHHHHhhhc--CcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhcCCCCCC
Confidence 876 6778899999999999999999999998 8999999999999997532 1223455677
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 248 FTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+|+++|+.+++++++....++|+.+.+|||+.
T Consensus 232 ~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 264 (266)
T 3uxy_A 232 AEPEDIADVVLFLASDAARYLCGSLVEVNGGKA 264 (266)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCC
T ss_pred cCHHHHHHHHHHHhCchhcCCcCCEEEECcCEe
Confidence 899999999999999988999999999999864
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=294.44 Aligned_cols=236 Identities=17% Similarity=0.228 Sum_probs=197.4
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC------------cccccccccccCCCceeEEEeeCCC
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN------------GATGLLDLKNRFPERLDVLQLDLTV 90 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~------------~~~~~~~~~~~~~~~v~~~~~Dls~ 90 (282)
..+++||++|||||++|||+++|++|+++|++ |++++|+.. ..+.....+...+.++.++++|++|
T Consensus 5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 82 (287)
T 3pxx_A 5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGAD--IILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRD 82 (287)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTC
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCCe--EEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCC
Confidence 34689999999999999999999999999988 999998732 2233333344456789999999999
Q ss_pred hhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccc
Q 023441 91 ESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERD 170 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~ 170 (282)
+++++++++++.++++++|+||||||+.. .. .+.+.++|++.+++|+.+++++++.+.|.|.+. |
T Consensus 83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~-------~~--~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--g---- 147 (287)
T 3pxx_A 83 RAAVSRELANAVAEFGKLDVVVANAGICP-------LG--AHLPVQAFADAFDVDFVGVINTVHAALPYLTSG--A---- 147 (287)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCC-------CC--TTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTT--C----
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCc-------cc--CcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcC--c----
Confidence 99999999999999999999999999874 22 236778999999999999999999999999432 2
Q ss_pred eeEEEEeeccccccCCC--------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----
Q 023441 171 VAVVANLSARVGSIGDN--------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---- 238 (282)
Q Consensus 171 ~~~iv~~ss~~~~~~~~--------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---- 238 (282)
+||++||..+..+.. +.++...|+++|++++.|+++++.|++++ +|+||+|+||+++|++.+..
T Consensus 148 --~iv~isS~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~ 223 (287)
T 3pxx_A 148 --SIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQ--SIRANVIHPTNVNTDMLNSAPMYR 223 (287)
T ss_dssp --EEEEECCHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEESSBSSTTTSSHHHHH
T ss_pred --EEEEeccchhcccccccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhc--CcEEEEEecCccccccccccchhh
Confidence 899999988765421 11456789999999999999999999998 89999999999999987531
Q ss_pred --------------------ccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 239 --------------------QRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 239 --------------------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
....+ .+..+|+|+|+.+++++++...+++|+.+.+|||+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdGG~~ 284 (287)
T 3pxx_A 224 QFRPDLEAPSRADALLAFPAMQAMP-TPYVEASDISNAVCFLASDESRYVTGLQFKVDAGAM 284 (287)
T ss_dssp HHCTTSSSCCHHHHHHHGGGGCSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred hhccccccchhHHHHhhhhhhcccC-CCCCCHHHHHhhHheecchhhcCCCCceEeECchhh
Confidence 11112 566799999999999999988999999999999864
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=287.16 Aligned_cols=240 Identities=17% Similarity=0.230 Sum_probs=206.6
Q ss_pred ccccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCC-ceeEEEeeCCChhHHHHHHHH
Q 023441 24 VKWKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE-RLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 24 ~~~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~-~v~~~~~Dls~~~~~~~~~~~ 100 (282)
++++||++|||||+ +|||+++|++|+++|++ |++++|+....+.+.++..+.+. ++.++++|++|.+++++++++
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 80 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGAR--LIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFAS 80 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCE--EEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHH
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE--EEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHH
Confidence 57899999999999 66999999999999998 99999987555555555555554 899999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.++++++|+||||||...... ...+..+.+.++|++.+++|+.+++.+++.+.|.|++. ++||++||.
T Consensus 81 ~~~~~g~id~li~~Ag~~~~~~---~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--------g~iv~isS~ 149 (266)
T 3oig_A 81 IKEQVGVIHGIAHCIAFANKEE---LVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEG--------GSIVTLTYL 149 (266)
T ss_dssp HHHHHSCCCEEEECCCCCCGGG---GSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTC--------EEEEEEECG
T ss_pred HHHHhCCeeEEEEccccccccc---cccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCC--------ceEEEEecc
Confidence 9999999999999999874100 02456678889999999999999999999999998742 399999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------CCCCCCCCCh
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------NVPEGKLFTK 250 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------~~~~~~~~~~ 250 (282)
.+..+ .++...|++||++++.|+++++.|+++. +|+|++|+||+++|++...... ..+..+..+|
T Consensus 150 ~~~~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~p 224 (266)
T 3oig_A 150 GGELV---MPNYNVMGVAKASLDASVKYLAADLGKE--NIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTP 224 (266)
T ss_dssp GGTSC---CTTTHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSSCCCH
T ss_pred ccccc---CCCcchhHHHHHHHHHHHHHHHHHHhhc--CcEEEEEecCcccccccccccchHHHHHHHHhcCCCCCCCCH
Confidence 98877 6778899999999999999999999988 8999999999999988654321 2345667899
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
+++|+.+++++++....++|+.+.+|||+..
T Consensus 225 ~dva~~v~~l~s~~~~~~tG~~i~vdGG~~~ 255 (266)
T 3oig_A 225 EEVGDTAAFLFSDMSRGITGENLHVDSGFHI 255 (266)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred HHHHHHHHHHcCCchhcCcCCEEEECCCeEE
Confidence 9999999999998889999999999999864
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=288.32 Aligned_cols=234 Identities=24% Similarity=0.335 Sum_probs=202.8
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||++|||||++|||++++++|+++|++ |++++|+.++.++..+.+ +.++.++++|++|+++++++++++.++
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (254)
T 1hdc_A 2 DLSGKTVIITGGARGLGAEAARQAVAAGAR--VVLADVLDEEGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHh---CCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999988 999999887665543333 457899999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||... ..++.+.+.++|++.+++|+.+++.+++.+.|.|++++.| +||++||..+..
T Consensus 77 ~g~iD~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g------~iv~isS~~~~~ 143 (254)
T 1hdc_A 77 FGSVDGLVNNAGIST-------GMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGG------SIVNISSAAGLM 143 (254)
T ss_dssp HSCCCEEEECCCCCC-------CSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGGTS
T ss_pred cCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC------EEEEECchhhcc
Confidence 999999999999874 4556778889999999999999999999999999876543 999999998876
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------ccCCCCCCCC-ChHHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--------QRNVPEGKLF-TKEFSVQ 255 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--------~~~~~~~~~~-~~~~~a~ 255 (282)
+ .++...|+++|++++.|+++++.|+++. +|++|+|+||+++|++.+.. ....+..+.. +|+++|+
T Consensus 144 ~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~~dvA~ 218 (254)
T 1hdc_A 144 G---LALTSSYGASKWGVRGLSKLAAVELGTD--RIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEPGEIAG 218 (254)
T ss_dssp C---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCHHHHHHTCCCSTTSCTTSTTSSCB-CHHHHHH
T ss_pred C---CCCchhHHHHHHHHHHHHHHHHHHhhhc--CeEEEEEecccCcCccccccchhHHHHHHhcCCCCCCCCCHHHHHH
Confidence 6 5677899999999999999999999988 89999999999999874421 1122344566 9999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCcccC
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
.+++++++....++|+.+.+||++..
T Consensus 219 ~v~~l~s~~~~~~tG~~~~vdgG~~~ 244 (254)
T 1hdc_A 219 AVVKLLSDTSSYVTGAELAVDGGWTT 244 (254)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTTTTT
T ss_pred HHHHHhCchhcCCCCCEEEECCCccc
Confidence 99999998778999999999999753
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-43 Score=302.71 Aligned_cols=241 Identities=19% Similarity=0.259 Sum_probs=205.9
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCC-cEEEEeecCCCcccccccccccC--CCceeEEEeeCCChhHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDK-GCVIATCRNPNGATGLLDLKNRF--PERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~-~~vi~~~r~~~~~~~~~~~~~~~--~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
..+++||++|||||++|||+++|++|+++|+. ..|++.+|+.+.++++.+.+... +.++.+++||++|+++++++++
T Consensus 28 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 107 (287)
T 3rku_A 28 AERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIE 107 (287)
T ss_dssp HHHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHH
T ss_pred hhhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHH
Confidence 46789999999999999999999999999971 13999999988877655544332 4589999999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.+++|++|+||||||... +..++.+.+.++|++.+++|+.+++++++++.|.|++++.| +||++||
T Consensus 108 ~~~~~~g~iD~lVnnAG~~~------~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g------~IV~isS 175 (287)
T 3rku_A 108 NLPQEFKDIDILVNNAGKAL------GSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSG------DIVNLGS 175 (287)
T ss_dssp TSCGGGCSCCEEEECCCCCC------CCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC------EEEEECC
T ss_pred HHHHhcCCCCEEEECCCcCC------CCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------eEEEECC
Confidence 99999999999999999864 24556778889999999999999999999999999887665 9999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------CCCCCCCCChH
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------NVPEGKLFTKE 251 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~~~~~~~~~~~ 251 (282)
..+..+ .++...|++||+++++|+++++.|+++. +|+||+|+||+++|++...... .......++|+
T Consensus 176 ~~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~pe 250 (287)
T 3rku_A 176 IAGRDA---YPTGSIYCASKFAVGAFTDSLRKELINT--KIRVILIAPGLVETEFSLVRYRGNEEQAKNVYKDTTPLMAD 250 (287)
T ss_dssp GGGTSC---CTTCHHHHHHHHHHHHHHHHHHHHTTTS--SCEEEEEEESCEESSHHHHHTTTCHHHHHHHHTTSCCEEHH
T ss_pred hhhcCC---CCCCchHHHHHHHHHHHHHHHHHHhhhc--CCEEEEEeCCcCcCccccccccCcHHHHHHhhcccCCCCHH
Confidence 998876 6778899999999999999999999988 8999999999999997432111 11122334899
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+|+.+++++++....++|+.+.+++++.
T Consensus 251 dvA~~v~~l~s~~~~~i~g~~i~v~~g~~ 279 (287)
T 3rku_A 251 DVADLIVYATSRKQNTVIADTLIFPTNQA 279 (287)
T ss_dssp HHHHHHHHHHTSCTTEEEEEEEEEETTEE
T ss_pred HHHHHHHHHhCCCCCeEecceEEeeCCCC
Confidence 99999999999999999999999988763
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-41 Score=285.15 Aligned_cols=229 Identities=19% Similarity=0.277 Sum_probs=199.8
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.|+++||++|||||++|||+++|++|+++|++ |++++|+.+.... .++.++++|++|+++++++++++.
T Consensus 23 m~~~~~k~vlVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~---------~~~~~~~~Dv~d~~~v~~~~~~~~ 91 (260)
T 3un1_A 23 MMRNQQKVVVITGASQGIGAGLVRAYRDRNYR--VVATSRSIKPSAD---------PDIHTVAGDISKPETADRIVREGI 91 (260)
T ss_dssp HHHTTCCEEEESSCSSHHHHHHHHHHHHTTCE--EEEEESSCCCCSS---------TTEEEEESCTTSHHHHHHHHHHHH
T ss_pred hhCcCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCChhhccc---------CceEEEEccCCCHHHHHHHHHHHH
Confidence 47789999999999999999999999999988 9999998765432 368999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+++|++|+||||||+.. ..+..+.+.++|++.+++|+.+++++++++.|.|.+++.| +||++||..+
T Consensus 92 ~~~g~iD~lv~nAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g------~iv~isS~~~ 158 (260)
T 3un1_A 92 ERFGRIDSLVNNAGVFL-------AKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSG------HIVSITTSLV 158 (260)
T ss_dssp HHHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE------EEEEECCTTT
T ss_pred HHCCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc------EEEEEechhh
Confidence 99999999999999875 5567788899999999999999999999999999887764 9999999876
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-----ccCCCCCCCCChHHHHHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-----QRNVPEGKLFTKEFSVQKL 257 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-----~~~~~~~~~~~~~~~a~~~ 257 (282)
..+. +..+...|++||++++.|+++++.|++++ +|+||+|+||+++|++.... ....+..+..+|+|+|+.+
T Consensus 159 ~~~~-~~~~~~~Y~~sKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~t~~~~~~~~~~~~~~~p~~r~~~~~dva~av 235 (260)
T 3un1_A 159 DQPM-VGMPSALASLTKGGLNAVTRSLAMEFSRS--GVRVNAVSPGVIKTPMHPAETHSTLAGLHPVGRMGEIRDVVDAV 235 (260)
T ss_dssp TSCB-TTCCCHHHHHHHHHHHHHHHHHHHHTTTT--TEEEEEEEECCBCCTTSCGGGHHHHHTTSTTSSCBCHHHHHHHH
T ss_pred ccCC-CCCccHHHHHHHHHHHHHHHHHHHHhCcC--CeEEEEEeecCCCCCCCCHHHHHHHhccCCCCCCcCHHHHHHHH
Confidence 5332 23455789999999999999999999988 89999999999999987532 2345667788999999999
Q ss_pred HHHHhhcCCCCCCceeecCCccc
Q 023441 258 LNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 258 ~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++ .....++|+.+.+|||+.
T Consensus 236 ~~L--~~~~~itG~~i~vdGG~~ 256 (260)
T 3un1_A 236 LYL--EHAGFITGEILHVDGGQN 256 (260)
T ss_dssp HHH--HHCTTCCSCEEEESTTGG
T ss_pred HHh--cccCCCCCcEEEECCCee
Confidence 998 445789999999999874
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=288.65 Aligned_cols=234 Identities=20% Similarity=0.268 Sum_probs=204.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+||++|||||++|||++++++|+++|++ |++++|+.++.+...+.+...+.++.++++|++|+++++++++++.++++
T Consensus 1 m~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 78 (256)
T 1geg_A 1 MKKVALVTGAGQGIGKAIALRLVKDGFA--VAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLG 78 (256)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3799999999999999999999999987 99999998776665555544466899999999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeeccccccC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~~~~~~ 185 (282)
++|+||||||... ..++.+.+.++|++.+++|+.+++.+++.+.|.|.+++ . ++||++||..+..+
T Consensus 79 ~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~------g~iv~isS~~~~~~ 145 (256)
T 1geg_A 79 GFDVIVNNAGVAP-------STPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHG------GKIINACSQAGHVG 145 (256)
T ss_dssp CCCEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC------EEEEEECCGGGTSC
T ss_pred CCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC------CEEEEECchhhcCC
Confidence 9999999999864 45667788899999999999999999999999998755 3 39999999988766
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------------ccCCCCCC
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------------QRNVPEGK 246 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------------~~~~~~~~ 246 (282)
.+....|+++|++++.|+++++.|++++ +|++|+|+||+++|++.... ....+..+
T Consensus 146 ---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r 220 (256)
T 1geg_A 146 ---NPELAVYSSSKFAVRGLTQTAARDLAPL--GITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGR 220 (256)
T ss_dssp ---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCS
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHHHHHc--CeEEEEEEECCCccchhhhhhhhccccccCChHHHHHHHHhcCCCCC
Confidence 5677899999999999999999999988 89999999999999874322 11234566
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 247 LFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
..+|+++|+.+.+++++....++|+.+.+|||+.
T Consensus 221 ~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 254 (256)
T 1geg_A 221 LSEPEDVAACVSYLASPDSDYMTGQSLLIDGGMV 254 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred CcCHHHHHHHHHHHhCccccCCCCCEEEeCCCcc
Confidence 7899999999999998888899999999999864
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-41 Score=285.64 Aligned_cols=231 Identities=22% Similarity=0.245 Sum_probs=189.8
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
...|+++||++|||||++|||+++|++|+++|++ |++++|+.++..+..... .+.++++|++|++++++++++
T Consensus 20 ~~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~ 92 (260)
T 3gem_A 20 QGHMTLSSAPILITGASQRVGLHCALRLLEHGHR--VIISYRTEHASVTELRQA-----GAVALYGDFSCETGIMAFIDL 92 (260)
T ss_dssp -------CCCEEESSTTSHHHHHHHHHHHHTTCC--EEEEESSCCHHHHHHHHH-----TCEEEECCTTSHHHHHHHHHH
T ss_pred ccCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCChHHHHHHHHhc-----CCeEEECCCCCHHHHHHHHHH
Confidence 3558899999999999999999999999999998 999999987653322211 378999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.++++++|+||||||... ... .+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||.
T Consensus 93 ~~~~~g~iD~lv~nAg~~~-------~~~-~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g------~iv~isS~ 158 (260)
T 3gem_A 93 LKTQTSSLRAVVHNASEWL-------AET-PGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVA------DIVHISDD 158 (260)
T ss_dssp HHHHCSCCSEEEECCCCCC-------CCC-TTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSC------EEEEECCG
T ss_pred HHHhcCCCCEEEECCCccC-------CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------EEEEECCh
Confidence 9999999999999999874 222 456678999999999999999999999999987665 99999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc------ccccCCCCCCCCChHHHH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR------PFQRNVPEGKLFTKEFSV 254 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~------~~~~~~~~~~~~~~~~~a 254 (282)
.+..+ .++...|++||++++.|+++++.|+++ +|+||+|+||++.|++.. ......+..+..+|+++|
T Consensus 159 ~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~---~Irvn~v~PG~v~t~~~~~~~~~~~~~~~~p~~r~~~~edva 232 (260)
T 3gem_A 159 VTRKG---SSKHIAYCATKAGLESLTLSFAARFAP---LVKVNGIAPALLMFQPKDDAAYRANALAKSALGIEPGAEVIY 232 (260)
T ss_dssp GGGTC---CSSCHHHHHHHHHHHHHHHHHHHHHTT---TCEEEEEEECTTCC---------------CCSCCCCCTHHHH
T ss_pred hhcCC---CCCcHhHHHHHHHHHHHHHHHHHHHCC---CCEEEEEeecccccCCCCCHHHHHHHHhcCCCCCCCCHHHHH
Confidence 98876 667889999999999999999999987 499999999999998643 222344556677899999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCccc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.+++++. ...++|+.+.+|||+.
T Consensus 233 ~~v~~L~~--~~~itG~~i~vdGG~~ 256 (260)
T 3gem_A 233 QSLRYLLD--STYVTGTTLTVNGGRH 256 (260)
T ss_dssp HHHHHHHH--CSSCCSCEEEESTTTT
T ss_pred HHHHHHhh--CCCCCCCEEEECCCcc
Confidence 99999984 5789999999999864
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=289.88 Aligned_cols=229 Identities=24% Similarity=0.359 Sum_probs=199.7
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
....+++||++|||||++|||+++|++|+++|++ |++++|+.+... ..+.++++|++|++++++++++
T Consensus 7 ~~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~--V~~~~r~~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~ 74 (269)
T 3vtz_A 7 HHMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAK--VVSVSLDEKSDV----------NVSDHFKIDVTNEEEVKEAVEK 74 (269)
T ss_dssp ---CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE--EEEEESCC--CT----------TSSEEEECCTTCHHHHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCCchhcc----------CceeEEEecCCCHHHHHHHHHH
Confidence 3456789999999999999999999999999988 999999876542 2567889999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.++++++|+||||||+.. ..+..+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||.
T Consensus 75 ~~~~~g~iD~lv~nAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g------~iv~isS~ 141 (269)
T 3vtz_A 75 TTKKYGRIDILVNNAGIEQ-------YSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHG------SIINIASV 141 (269)
T ss_dssp HHHHHSCCCEEEECCCCCC-------CCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCG
T ss_pred HHHHcCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC------EEEEECch
Confidence 9999999999999999875 5667788899999999999999999999999999876654 99999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------------ccC
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------------QRN 241 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------------~~~ 241 (282)
.+..+ .++...|++||++++.|+++++.|+++ +|+||+|+||+++|++.... ...
T Consensus 142 ~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~---~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (269)
T 3vtz_A 142 QSYAA---TKNAAAYVTSKHALLGLTRSVAIDYAP---KIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQ 215 (269)
T ss_dssp GGTSB---CTTCHHHHHHHHHHHHHHHHHHHHHTT---TEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHH
T ss_pred hhccC---CCCChhHHHHHHHHHHHHHHHHHHhcC---CCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhc
Confidence 98876 667789999999999999999999976 59999999999999975321 122
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 242 VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+..+..+|+++|+.+++++++....++|+.+.+|||+.
T Consensus 216 ~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 254 (269)
T 3vtz_A 216 HPMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDGGLL 254 (269)
T ss_dssp STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCCcc
Confidence 455677899999999999999988999999999999975
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=287.70 Aligned_cols=236 Identities=22% Similarity=0.298 Sum_probs=206.8
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC-CceeEEEeeC--CChhHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP-ERLDVLQLDL--TVESTIEAS 97 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~-~~v~~~~~Dl--s~~~~~~~~ 97 (282)
..+.+++||++|||||++|||+++|++|+++|++ |++++|+.++.+...+.+...+ .++.++.+|+ +|.++++++
T Consensus 7 ~~~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~ 84 (247)
T 3i1j_A 7 AHPELLKGRVILVTGAARGIGAAAARAYAAHGAS--VVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYREL 84 (247)
T ss_dssp CCTTTTTTCEEEESSTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHH
T ss_pred CCCccCCCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHH
Confidence 4556789999999999999999999999999987 9999999988777665554443 5778888888 999999999
Q ss_pred HHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 98 AKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
++++.+.++++|+||||||... +..++.+.+.++|++.+++|+.+++.+++.+.|.|++++.+ +||++
T Consensus 85 ~~~~~~~~g~id~lv~nAg~~~------~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~------~iv~i 152 (247)
T 3i1j_A 85 AARVEHEFGRLDGLLHNASIIG------PRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDA------SIAFT 152 (247)
T ss_dssp HHHHHHHHSCCSEEEECCCCCC------CCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSE------EEEEE
T ss_pred HHHHHHhCCCCCEEEECCccCC------CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC------eEEEE
Confidence 9999999999999999999864 24567788899999999999999999999999999877654 99999
Q ss_pred eccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhcc-CCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHH
Q 023441 178 SARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGR-KKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQK 256 (282)
Q Consensus 178 ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~-~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~ 256 (282)
||..+..+ .++...|+++|++++.|+++++.|+++ . +|+||+|+||+++|++.....+........+|+++|+.
T Consensus 153 sS~~~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~~--~i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~p~dva~~ 227 (247)
T 3i1j_A 153 SSSVGRKG---RANWGAYGVSKFATEGLMQTLADELEGVT--AVRANSINPGATRTGMRAQAYPDENPLNNPAPEDIMPV 227 (247)
T ss_dssp CCGGGTSC---CTTCHHHHHHHHHHHHHHHHHHHHHTTTS--SEEEEEEECCCCSSHHHHHHSTTSCGGGSCCGGGGTHH
T ss_pred cchhhcCC---CCCcchhHHHHHHHHHHHHHHHHHhcCCC--CeEEEEEecCcccCccchhcccccCccCCCCHHHHHHH
Confidence 99988876 677889999999999999999999976 5 89999999999999987665544455566789999999
Q ss_pred HHHHHhhcCCCCCCceeec
Q 023441 257 LLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 257 ~~~~~~~~~~~~~g~~~~~ 275 (282)
+++++++...+++|+.+..
T Consensus 228 ~~~l~s~~~~~itG~~i~~ 246 (247)
T 3i1j_A 228 YLYLMGPDSTGINGQALNA 246 (247)
T ss_dssp HHHHHSGGGTTCCSCEEEC
T ss_pred HHHHhCchhccccCeeecC
Confidence 9999998889999999874
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=292.53 Aligned_cols=246 Identities=20% Similarity=0.236 Sum_probs=198.2
Q ss_pred ccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC-Ccccccccccc-cCCCceeEEEeeCCC----hhH
Q 023441 20 ASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NGATGLLDLKN-RFPERLDVLQLDLTV----EST 93 (282)
Q Consensus 20 ~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~-~~~~~~~~~~~-~~~~~v~~~~~Dls~----~~~ 93 (282)
....++++||++|||||++|||+++|++|+++|++ |++++|+. +..+.+.+.+. ..+.++.++++|++| .++
T Consensus 15 ~~~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~~--V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~ 92 (288)
T 2x9g_A 15 VPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYR--VVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPAS 92 (288)
T ss_dssp -------CCCEEEETTCSSHHHHHHHHHHHHHTCE--EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHH
T ss_pred CCCCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCe--EEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHH
Confidence 34557789999999999999999999999999987 99999998 66655544443 446689999999999 999
Q ss_pred HHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccc-----cc-----cchhhhhhhhhhhhcHHHHHHHHhhhhhhcC
Q 023441 94 IEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTL-----NK-----VEKSSLMLAYEVNAVGPILVIKHMSPLLKVG 163 (282)
Q Consensus 94 ~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~ 163 (282)
++++++++.+.++++|+||||||+.. ..+. .+ .+.++|++.+++|+.+++.+++.+.|.|.++
T Consensus 93 v~~~~~~~~~~~g~iD~lvnnAG~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~ 165 (288)
T 2x9g_A 93 CEEIINSCFRAFGRCDVLVNNASAFY-------PTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGT 165 (288)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCC-------CCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCC-------CCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999874 2222 34 6788999999999999999999999999876
Q ss_pred CCCCccceeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc------
Q 023441 164 GTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------ 237 (282)
Q Consensus 164 ~~g~~~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~------ 237 (282)
+.......++||++||..+..+ .++...|++||++++.|+++++.|+++. +|+||+|+||+++|++ +.
T Consensus 166 ~~~~~~~~g~iv~isS~~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~t~~-~~~~~~~~ 239 (288)
T 2x9g_A 166 NPNCTSSNLSIVNLCDAMVDQP---CMAFSLYNMGKHALVGLTQSAALELAPY--GIRVNGVAPGVSLLPV-AMGEEEKD 239 (288)
T ss_dssp -----CCCEEEEEECCTTTTSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESSCSCCT-TSCHHHHH
T ss_pred CCCCCCCCeEEEEEecccccCC---CCCCchHHHHHHHHHHHHHHHHHHhhcc--CeEEEEEEeccccCcc-ccChHHHH
Confidence 5110111249999999988766 6677899999999999999999999988 8999999999999998 31
Q ss_pred -cccCCCCCCC-CChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 238 -FQRNVPEGKL-FTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 238 -~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+....+..+. .+|+++|+.+++++++....++|+.+.+|||+.
T Consensus 240 ~~~~~~p~~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~ 284 (288)
T 2x9g_A 240 KWRRKVPLGRREASAEQIADAVIFLVSGSAQYITGSIIKVDGGLS 284 (288)
T ss_dssp HHHHTCTTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHhhCCCCCCCCCHHHHHHHHHHHhCccccCccCCEEEECcchh
Confidence 1122455566 799999999999999888999999999999863
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=293.38 Aligned_cols=237 Identities=19% Similarity=0.246 Sum_probs=204.7
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCC---ceeEEEeeCCChhHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE---RLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~---~v~~~~~Dls~~~~~~~~~~ 99 (282)
.|+++||++|||||++|||+++|++|+++|++ |++++|+.++++...+.+...+. ++.++++|++|+++++++++
T Consensus 21 m~~l~~k~vlVTGas~gIG~aia~~L~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 98 (297)
T 1xhl_A 21 MARFSGKSVIITGSSNGIGRSAAVIFAKEGAQ--VTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIIN 98 (297)
T ss_dssp --CCTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHH
Confidence 35789999999999999999999999999988 99999998777665544444444 79999999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCccc--ccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETT--LNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
++.++++++|+||||||... ..+ +.+.+.++|++.+++|+.+++++++.+.|.|.+++ | +||++
T Consensus 99 ~~~~~~g~iD~lvnnAG~~~-------~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g------~IV~i 164 (297)
T 1xhl_A 99 TTLAKFGKIDILVNNAGANL-------ADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-G------EIVNV 164 (297)
T ss_dssp HHHHHHSCCCEEEECCCCCC-------CCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-C------EEEEE
T ss_pred HHHHhcCCCCEEEECCCcCc-------CCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-C------EEEEE
Confidence 99999999999999999864 333 66788899999999999999999999999998765 4 99999
Q ss_pred eccccccCCCCC-CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-----------------c
Q 023441 178 SARVGSIGDNRL-GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-----------------Q 239 (282)
Q Consensus 178 ss~~~~~~~~~~-~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-----------------~ 239 (282)
||..+..+ . ++...|+++|++++.|+++++.|+++. +|+||+|+||+++|++.... .
T Consensus 165 sS~~~~~~---~~~~~~~Y~asKaa~~~l~~~la~el~~~--gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 239 (297)
T 1xhl_A 165 SSIVAGPQ---AHSGYPYYACAKAALDQYTRCTAIDLIQH--GVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRK 239 (297)
T ss_dssp CCGGGSSS---CCTTSHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCT
T ss_pred cCchhccC---CCCCcchHHHHHHHHHHHHHHHHHHhccc--CeEEEEEeeCCCcCccccccccccccccchHHHHHHHH
Confidence 99988765 4 567899999999999999999999988 89999999999999975432 1
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhhc-CCCCCCceeecCCccc
Q 023441 240 RNVPEGKLFTKEFSVQKLLNIINNI-KSHDNGKFFAWDGQEI 280 (282)
Q Consensus 240 ~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~g~~~~~d~~~~ 280 (282)
...+..+..+|+++|+.+++++++. ...++|+.+.+||++.
T Consensus 240 ~~~p~~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~ 281 (297)
T 1xhl_A 240 ECIPVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGST 281 (297)
T ss_dssp TTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred hcCCCCCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCcc
Confidence 1234556789999999999999887 7899999999999864
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=288.99 Aligned_cols=241 Identities=18% Similarity=0.184 Sum_probs=206.4
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
....+++||++|||||++|||++++++|+++|++ |++++|+.++.+...+.+...+.++.++.+|++|.+++++++++
T Consensus 7 ~~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 84 (260)
T 2zat_A 7 ERRKPLENKVALVTASTDGIGLAIARRLAQDGAH--VVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAM 84 (260)
T ss_dssp ---CTTTTCEEEESSCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 3456788999999999999999999999999987 99999998776655544444466899999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.+.++++|+||||||... ...++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||.
T Consensus 85 ~~~~~g~iD~lv~~Ag~~~------~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g------~iv~isS~ 152 (260)
T 2zat_A 85 AVNLHGGVDILVSNAAVNP------FFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGG------SVLIVSSV 152 (260)
T ss_dssp HHHHHSCCCEEEECCCCCC------CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE------EEEEECCG
T ss_pred HHHHcCCCCEEEECCCCCC------CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC------EEEEEech
Confidence 9999999999999999863 13456677889999999999999999999999999876553 99999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCCh
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTK 250 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~ 250 (282)
.+..+ .++...|+++|++++.|+++++.|++++ +|++|+|+||+++|++..... ...+..+..+|
T Consensus 153 ~~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (260)
T 2zat_A 153 GAYHP---FPNLGPYNVSKTALLGLTKNLAVELAPR--NIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNP 227 (260)
T ss_dssp GGTSC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCSSTTHHHHSSHHHHHHHHHHHTCSSCBCG
T ss_pred hhcCC---CCCchhHHHHHHHHHHHHHHHHHHhccc--CeEEEEEEECcccCccchhcccChHHHHHHHhcCCCCCCCCH
Confidence 88766 5677899999999999999999999988 899999999999999864311 11244567799
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++|+.+.+++++....++|+.+.+||++.
T Consensus 228 ~dva~~v~~l~s~~~~~~tG~~~~vdgG~~ 257 (260)
T 2zat_A 228 EDCAGIVSFLCSEDASYITGETVVVGGGTA 257 (260)
T ss_dssp GGGHHHHHHHTSGGGTTCCSCEEEESTTCC
T ss_pred HHHHHHHHHHcCcccCCccCCEEEECCCcc
Confidence 999999999998878899999999999863
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=290.03 Aligned_cols=232 Identities=18% Similarity=0.236 Sum_probs=194.9
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++||++|||||++|||+++|++|+++|++ |++++|+.++++++.+.+...+.++.++.+|++|+++++++++++.+++
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAK--ILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTW 79 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999988 9999999988877766666667789999999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
|++|+||||||+.. ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||..+..+
T Consensus 80 g~iD~lVnnAG~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g------~IV~isS~~~~~~ 146 (264)
T 3tfo_A 80 GRIDVLVNNAGVMP-------LSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSG------QIINIGSIGALSV 146 (264)
T ss_dssp SCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGGTCC
T ss_pred CCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCe------EEEEEcCHHHccc
Confidence 99999999999875 5677888899999999999999999999999999876654 9999999998877
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCC-------CCCCCChHHHHHHHH
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVP-------EGKLFTKEFSVQKLL 258 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~-------~~~~~~~~~~a~~~~ 258 (282)
.++...|++||+++++|+++++.|+ . +|+||+|+||+++|++......... .....+|+++|+.++
T Consensus 147 ---~~~~~~Y~asKaal~~l~~~la~e~--~--gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~ 219 (264)
T 3tfo_A 147 ---VPTAAVYCATKFAVRAISDGLRQES--T--NIRVTCVNPGVVESELAGTITHEETMAAMDTYRAIALQPADIARAVR 219 (264)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHC--S--SEEEEEEEECCC-----------------------CCCHHHHHHHHH
T ss_pred ---CCCChhHHHHHHHHHHHHHHHHHhC--C--CCEEEEEecCCCcCcccccccchhHHHHHHhhhccCCCHHHHHHHHH
Confidence 6778899999999999999999997 2 8999999999999998765332111 112468999999999
Q ss_pred HHHhhcCCCCCCceeecCCcc
Q 023441 259 NIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 259 ~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++++......+|..+..++++
T Consensus 220 ~l~s~~~~~~~~~i~i~p~~~ 240 (264)
T 3tfo_A 220 QVIEAPQSVDTTEITIRPTAS 240 (264)
T ss_dssp HHHHSCTTEEEEEEEEEECC-
T ss_pred HHhcCCccCccceEEEecCcc
Confidence 999998888888887766543
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=288.43 Aligned_cols=236 Identities=14% Similarity=0.166 Sum_probs=202.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC--CCceeEEEeeCCChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF--PERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~--~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
|+++||++|||||++|||++++++|+++|++ |++++|+.++.+...+.+... +.++.++++|++|+++++++++++
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (260)
T 2z1n_A 3 LGIQGKLAVVTAGSSGLGFASALELARNGAR--LLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKA 80 (260)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHH
Confidence 5688999999999999999999999999987 999999987666544433321 237899999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++++ +|+||||||... ..++.+.+.++|++.+++|+.+++.+++.+.|.|.+++.| +||++||..
T Consensus 81 ~~~~g-id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g------~iv~isS~~ 146 (260)
T 2z1n_A 81 RDLGG-ADILVYSTGGPR-------PGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWG------RMVYIGSVT 146 (260)
T ss_dssp HHTTC-CSEEEECCCCCC-------CBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCE------EEEEECCGG
T ss_pred HHhcC-CCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------EEEEECchh
Confidence 99999 999999999864 4566778889999999999999999999999999876543 999999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc----------cccc---------CC
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR----------PFQR---------NV 242 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~----------~~~~---------~~ 242 (282)
+..+ .++...|+++|++++.|+++++.|++++ +|++|+|+||+++|++.. .... ..
T Consensus 147 ~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (260)
T 2z1n_A 147 LLRP---WQDLALSNIMRLPVIGVVRTLALELAPH--GVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRI 221 (260)
T ss_dssp GTSC---CTTBHHHHHHTHHHHHHHHHHHHHHGGG--TEEEEEEEECHHHHCCCC-----------------------CC
T ss_pred hcCC---CCCCchhHHHHHHHHHHHHHHHHHHhhh--CeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHhcC
Confidence 8766 5677899999999999999999999988 899999999999999865 2111 12
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 243 PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+..+..+|+++|+.+.+++++....++|+.+.+||++.
T Consensus 222 p~~r~~~~~dva~~v~~l~s~~~~~~tG~~i~vdGG~~ 259 (260)
T 2z1n_A 222 PMGRVGKPEELASVVAFLASEKASFITGAVIPVDGGAH 259 (260)
T ss_dssp TTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred CCCCccCHHHHHHHHHHHhCccccCCCCCEEEeCCCcc
Confidence 33456699999999999999888899999999999864
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=288.79 Aligned_cols=238 Identities=21% Similarity=0.290 Sum_probs=181.0
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.|+++||++|||||++|||+++|++|+++|++ |++++|+.+..+.+.+.+...+.++.++++|++|+++++++++++.
T Consensus 4 ~~~~~~k~vlITGas~giG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T 3qiv_A 4 SMRFENKVGIVTGSGGGIGQAYAEALAREGAA--VVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTL 81 (253)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 47889999999999999999999999999988 9999999988877666666667789999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+.++++|+||||||..... ...+..+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..+
T Consensus 82 ~~~g~id~li~~Ag~~~~~----~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g------~iv~isS~~~ 151 (253)
T 3qiv_A 82 AEFGGIDYLVNNAAIFGGM----KLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGG------AIVNQSSTAA 151 (253)
T ss_dssp HHHSCCCEEEECCCCCCGG----GGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE------EEEEECC---
T ss_pred HHcCCCCEEEECCCcCCCC----CCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC------EEEEECCccc
Confidence 9999999999999985210 13455677889999999999999999999999999876654 9999999887
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc---------cCCCCCCCCChHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ---------RNVPEGKLFTKEFS 253 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~---------~~~~~~~~~~~~~~ 253 (282)
. +....|++||++++.|+++++.|+++. +|++++|+||+++|++..... +..+..+..+|+++
T Consensus 152 ~------~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 223 (253)
T 3qiv_A 152 W------LYSNYYGLAKVGINGLTQQLSRELGGR--NIRINAIAPGPIDTEANRTTTPKEMVDDIVKGLPLSRMGTPDDL 223 (253)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTTT--TEEEEEEEC-------------------------------CCHH
T ss_pred c------CCCchhHHHHHHHHHHHHHHHHHHhhc--CeEEEEEEecCCcccchhhcCcHHHHHHHhccCCCCCCCCHHHH
Confidence 5 234679999999999999999999988 899999999999999765321 22344556689999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+.+++++++....++|+.|.+|||+.
T Consensus 224 a~~~~~l~s~~~~~~tG~~~~vdgG~~ 250 (253)
T 3qiv_A 224 VGMCLFLLSDEASWITGQIFNVDGGQI 250 (253)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEC-----
T ss_pred HHHHHHHcCccccCCCCCEEEECCCee
Confidence 999999999888899999999999874
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=291.35 Aligned_cols=237 Identities=20% Similarity=0.245 Sum_probs=198.4
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||++|||||++|||+++|++|+++|++ |++++|+.++++++.+. .+.++.++++|++|+++++++++++.+
T Consensus 1 M~l~gk~~lVTGas~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (281)
T 3zv4_A 1 MKLTGEVALITGGASGLGRALVDRFVAEGAR--VAVLDKSAERLRELEVA---HGGNAVGVVGDVRSLQDQKRAAERCLA 75 (281)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHH---TBTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCcHHHHHHHHHHHHCcCE--EEEEeCCHHHHHHHHHH---cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999987 99999988776554433 356899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|+||||||+...... ......+.+.+.|++.+++|+.+++.+++++.|.|.+++ | +||++||..+.
T Consensus 76 ~~g~iD~lvnnAg~~~~~~~--~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-g------~iv~isS~~~~ 146 (281)
T 3zv4_A 76 AFGKIDTLIPNAGIWDYSTA--LADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR-G------SVVFTISNAGF 146 (281)
T ss_dssp HHSCCCEEECCCCCCCTTCC--GGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C------EEEEECCGGGT
T ss_pred hcCCCCEEEECCCcCccccc--cccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-C------eEEEEecchhc
Confidence 99999999999998641110 011122445577999999999999999999999997654 3 99999999888
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc------------------ccCCCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF------------------QRNVPEG 245 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~------------------~~~~~~~ 245 (282)
.+ .++...|++||+++++|+++++.|+++ +|+||+|+||+++|++.... ....+..
T Consensus 147 ~~---~~~~~~Y~asKaa~~~l~~~la~e~~~---~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 220 (281)
T 3zv4_A 147 YP---NGGGPLYTATKHAVVGLVRQMAFELAP---HVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIG 220 (281)
T ss_dssp SS---SSSCHHHHHHHHHHHHHHHHHHHHHTT---TSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTCTTS
T ss_pred cC---CCCCchhHHHHHHHHHHHHHHHHHhcC---CCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcCCCC
Confidence 76 667789999999999999999999986 39999999999999986421 1234556
Q ss_pred CCCChHHHHHHHHHHHh-hcCCCCCCceeecCCccc
Q 023441 246 KLFTKEFSVQKLLNIIN-NIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~-~~~~~~~g~~~~~d~~~~ 280 (282)
+..+|+|+|+.++++++ +...+++|+.+.+|||+.
T Consensus 221 r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdGG~~ 256 (281)
T 3zv4_A 221 RMPALEEYTGAYVFFATRGDSLPATGALLNYDGGMG 256 (281)
T ss_dssp SCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESSSGG
T ss_pred CCCCHHHHHHHHHHhhcccccccccCcEEEECCCCc
Confidence 77899999999999999 667889999999999975
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-42 Score=299.76 Aligned_cols=243 Identities=19% Similarity=0.216 Sum_probs=206.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC----------CCcccccccccccCCCceeEEEeeCCChhH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN----------PNGATGLLDLKNRFPERLDVLQLDLTVEST 93 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~----------~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~ 93 (282)
.+++||++|||||++|||+++|++|+++|++ |++++|+ .+..+...+.+...+.++.++++|++|+++
T Consensus 23 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~--Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~ 100 (322)
T 3qlj_A 23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGAR--VVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQ 100 (322)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHH
Confidence 4588999999999999999999999999988 9999987 444555555555557789999999999999
Q ss_pred HHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeE
Q 023441 94 IEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAV 173 (282)
Q Consensus 94 ~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~ 173 (282)
++++++++.+++|++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.......++
T Consensus 101 v~~~~~~~~~~~g~iD~lv~nAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 173 (322)
T 3qlj_A 101 AAGLIQTAVETFGGLDVLVNNAGIVR-------DRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGR 173 (322)
T ss_dssp HHHHHHHHHHHHSCCCEEECCCCCCC-------CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcE
Confidence 99999999999999999999999975 55677888999999999999999999999999987542111112249
Q ss_pred EEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCC-----CCCCCC
Q 023441 174 VANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNV-----PEGKLF 248 (282)
Q Consensus 174 iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~-----~~~~~~ 248 (282)
||++||..+..+ .++...|++||++++.|+++++.|++++ +|+||+|+|| +.|++........ ......
T Consensus 174 IV~isS~~~~~~---~~~~~~Y~asKaal~~l~~~la~e~~~~--gI~vn~v~PG-~~t~~~~~~~~~~~~~~~~~~~~~ 247 (322)
T 3qlj_A 174 IINTSSGAGLQG---SVGQGNYSAAKAGIATLTLVGAAEMGRY--GVTVNAIAPS-ARTRMTETVFAEMMATQDQDFDAM 247 (322)
T ss_dssp EEEECCHHHHHC---BTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEEC-TTSCCSCCSCCC--------CCTT
T ss_pred EEEEcCHHHccC---CCCCccHHHHHHHHHHHHHHHHHHhccc--CcEEEEecCC-CCCccchhhhhhhhhccccccCCC
Confidence 999999988876 6677899999999999999999999998 8999999999 9999876543221 112346
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
+|+++|+.+++++++....++|+.+.+|||+..
T Consensus 248 ~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~ 280 (322)
T 3qlj_A 248 APENVSPLVVWLGSAEARDVTGKVFEVEGGKIR 280 (322)
T ss_dssp CGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEE
T ss_pred CHHHHHHHHHHHhCccccCCCCCEEEECCCccc
Confidence 899999999999998889999999999998753
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=290.26 Aligned_cols=237 Identities=17% Similarity=0.253 Sum_probs=204.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC-CCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-PERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~-~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|+++||++|||||++|||++++++|+++|++ |++++|+.++.+...+.+... +.++.++++|++|+++++++++++.
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (263)
T 3ai3_A 3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAH--IVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVR 80 (263)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 5688999999999999999999999999987 999999987665544443322 5679999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..+
T Consensus 81 ~~~g~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g------~iv~isS~~~ 147 (263)
T 3ai3_A 81 SSFGGADILVNNAGTGS-------NETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGG------AIIHNASICA 147 (263)
T ss_dssp HHHSSCSEEEECCCCCC-------CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGG
T ss_pred HHcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc------EEEEECchhh
Confidence 99999999999999874 4556677889999999999999999999999999876543 9999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-------------------cC-C
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-------------------RN-V 242 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-------------------~~-~ 242 (282)
..+ .+....|++||++++.|+++++.|++++ +|++|+|+||+++|++..... .. .
T Consensus 148 ~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (263)
T 3ai3_A 148 VQP---LWYEPIYNVTKAALMMFSKTLATEVIKD--NIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEHA 222 (263)
T ss_dssp TSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHC
T ss_pred cCC---CCCcchHHHHHHHHHHHHHHHHHHhhhc--CcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcCC
Confidence 766 5667899999999999999999999988 899999999999998754221 11 4
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 243 PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+..+..+|+++|+.+++++++....++|+.+.+||++.
T Consensus 223 p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdgG~~ 260 (263)
T 3ai3_A 223 PIKRFASPEELANFFVFLCSERATYSVGSAYFVDGGML 260 (263)
T ss_dssp TTCSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTCC
T ss_pred CCCCCcCHHHHHHHHHHHcCccccCCCCcEEEECCCcc
Confidence 55667899999999999998877889999999999864
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=287.77 Aligned_cols=235 Identities=22% Similarity=0.299 Sum_probs=204.0
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||++|||||++|||++++++|+++|++ |++.+|+.++.+...+.+ +.++.++++|++|+++++++++++.++
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAK--VAFSDINEAAGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEECSCHHHHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHc---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999987 999999887665544333 467899999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||... ..++.+.+.++|++.+++|+.+++.+++.+.|.|++++ | +||++||..+..
T Consensus 78 ~g~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g------~iv~isS~~~~~ 143 (253)
T 1hxh_A 78 LGTLNVLVNNAGILL-------PGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-G------SIINMASVSSWL 143 (253)
T ss_dssp HCSCCEEEECCCCCC-------CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-E------EEEEECCGGGTS
T ss_pred cCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-C------EEEEEcchhhcC
Confidence 999999999999874 45566778899999999999999999999999998765 4 999999998876
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc----------ccc---CCCCCCCCChH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP----------FQR---NVPEGKLFTKE 251 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~----------~~~---~~~~~~~~~~~ 251 (282)
+ .++...|++||++++.|+++++.|+++++.+|++++|+||+++|++.+. +.. ..+..+..+|+
T Consensus 144 ~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 220 (253)
T 1hxh_A 144 P---IEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPE 220 (253)
T ss_dssp C---CTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBTTTBTTCCEECHH
T ss_pred C---CCCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccchhhhHHHHhhhhccCccCCCCCHH
Confidence 6 5677899999999999999999999887557999999999999987443 111 23445567999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
++|+.+++++++....++|+.+.+||++..
T Consensus 221 dvA~~~~~l~s~~~~~~tG~~~~vdgG~~~ 250 (253)
T 1hxh_A 221 RIAQLVLFLASDESSVMSGSELHADNSILG 250 (253)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESSSCTT
T ss_pred HHHHHHHHHcCccccCCCCcEEEECCCccc
Confidence 999999999998888999999999999754
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-41 Score=284.51 Aligned_cols=232 Identities=27% Similarity=0.374 Sum_probs=190.7
Q ss_pred ccccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHH
Q 023441 18 SSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 18 ~~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~ 97 (282)
++....++++||++|||||++|||++++++|+++|++ |++.+|+.++.+ .+.++++|++|+++++++
T Consensus 11 ~~~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~-----------~~~~~~~Dl~d~~~v~~~ 77 (253)
T 2nm0_A 11 SSGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDK--VAITYRSGEPPE-----------GFLAVKCDITDTEQVEQA 77 (253)
T ss_dssp ---------CCCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSSCCCT-----------TSEEEECCTTSHHHHHHH
T ss_pred CCCCCccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCChHhhc-----------cceEEEecCCCHHHHHHH
Confidence 3445567889999999999999999999999999987 999999876543 278899999999999999
Q ss_pred HHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 98 AKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
++++.++++++|+||||||... ..++.+.+.++|++.+++|+.+++.+++++.|.|.+++.| +||++
T Consensus 78 ~~~~~~~~g~iD~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g------~iv~i 144 (253)
T 2nm0_A 78 YKEIEETHGPVEVLIANAGVTK-------DQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKG------RVVLI 144 (253)
T ss_dssp HHHHHHHTCSCSEEEEECSCCT-------TTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCE------EEEEE
T ss_pred HHHHHHHcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------EEEEE
Confidence 9999999999999999999874 4556677889999999999999999999999999876543 99999
Q ss_pred eccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCC
Q 023441 178 SARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFT 249 (282)
Q Consensus 178 ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~ 249 (282)
||..+..+ .++...|+++|++++.|+++++.|+++. +|++|+|+||+++|++.+... ...+..+..+
T Consensus 145 sS~~~~~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~p~~~~~~ 219 (253)
T 2nm0_A 145 SSVVGLLG---SAGQANYAASKAGLVGFARSLARELGSR--NITFNVVAPGFVDTDMTKVLTDEQRANIVSQVPLGRYAR 219 (253)
T ss_dssp CCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHCSS--SEEEEEEEECSBCC---------CHHHHHTTCTTCSCBC
T ss_pred CchhhCCC---CCCcHHHHHHHHHHHHHHHHHHHHhhhc--CeEEEEEEeCcCcCcchhhcCHHHHHHHHhcCCCCCCcC
Confidence 99988765 4566789999999999999999999988 899999999999999865422 1234456789
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+++|+.+.+++++....++|+.+.+||++.
T Consensus 220 p~dvA~~i~~l~s~~~~~~tG~~i~vdGG~~ 250 (253)
T 2nm0_A 220 PEEIAATVRFLASDDASYITGAVIPVDGGLG 250 (253)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHHHhCccccCCcCcEEEECCccc
Confidence 9999999999999888899999999999863
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-41 Score=286.60 Aligned_cols=243 Identities=18% Similarity=0.166 Sum_probs=200.3
Q ss_pred ccccccccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHH
Q 023441 20 ASASVKWKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 20 ~~~~~~~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~ 97 (282)
.....++++|++|||||+ +|||+++|++|+++|++ |++++|+....+.+.+...+.+ ++.+++||++|+++++++
T Consensus 6 ~~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~ 82 (271)
T 3ek2_A 6 HHHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAE--LAFTYVGDRFKDRITEFAAEFG-SELVFPCDVADDAQIDAL 82 (271)
T ss_dssp ---CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE--EEEEESSGGGHHHHHHHHHHTT-CCCEEECCTTCHHHHHHH
T ss_pred CCCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCC--EEEEecchhhHHHHHHHHHHcC-CcEEEECCCCCHHHHHHH
Confidence 345678899999999998 99999999999999987 9999998654444444444433 589999999999999999
Q ss_pred HHHHHHHcCCccEEEECcccCCCCCCCCCcccccc-cchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEE
Q 023441 98 AKSIKEKYGSLNLLINASGILSIPNVLQPETTLNK-VEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVAN 176 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~ 176 (282)
++++.++++++|+||||||+..... ...+..+ .+.++|++.+++|+.+++++++.+.|.|++. ++||+
T Consensus 83 ~~~~~~~~g~id~lv~nAg~~~~~~---~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--------g~iv~ 151 (271)
T 3ek2_A 83 FASLKTHWDSLDGLVHSIGFAPREA---IAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDD--------ASLLT 151 (271)
T ss_dssp HHHHHHHCSCEEEEEECCCCCCGGG---GSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEE--------EEEEE
T ss_pred HHHHHHHcCCCCEEEECCccCcccc---ccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccC--------ceEEE
Confidence 9999999999999999999874100 0033444 7889999999999999999999999998742 38999
Q ss_pred eeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCC
Q 023441 177 LSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGK 246 (282)
Q Consensus 177 ~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~ 246 (282)
+||..+..+ .++...|++||++++.|+++++.|+++. +|+|++|+||+++|++.+... ...+..+
T Consensus 152 isS~~~~~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 226 (271)
T 3ek2_A 152 LSYLGAERA---IPNYNTMGLAKAALEASVRYLAVSLGAK--GVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLKR 226 (271)
T ss_dssp EECGGGTSB---CTTTTHHHHHHHHHHHHHHHHHHHHHTT--TCEEEEEEECCC-----CCCHHHHHHHHHHHHHSTTSS
T ss_pred EeccccccC---CCCccchhHHHHHHHHHHHHHHHHHHhc--CcEEEEEecCcccchhhhcccchHHHHHHHHhcCCcCC
Confidence 999988876 6778899999999999999999999988 899999999999999876432 2345567
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 247 LFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
..+|+++|+.+++++++....++|+.+.+|||+..
T Consensus 227 ~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~~~ 261 (271)
T 3ek2_A 227 NVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNA 261 (271)
T ss_dssp CCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTGGG
T ss_pred CCCHHHHHHHHHHHcCcccCCeeeeEEEECCCeee
Confidence 78999999999999998889999999999999753
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-41 Score=284.48 Aligned_cols=234 Identities=23% Similarity=0.271 Sum_probs=202.7
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||++|||||++|||++++++|+++|++ |++.+|+.+ +...+.+...+.++.++++|++|+++++++++++.++
T Consensus 1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~--V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 76 (255)
T 2q2v_A 1 TLKGKTALVTGSTSGIGLGIAQVLARAGAN--IVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAERE 76 (255)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCE--EEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999999987 999999876 3333333444568999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||... ..++.+.+.++|++.+++|+.+++.+++.+.|.|++++.| +||++||..+..
T Consensus 77 ~g~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g------~iv~isS~~~~~ 143 (255)
T 2q2v_A 77 FGGVDILVNNAGIQH-------VAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWG------RIINIASVHGLV 143 (255)
T ss_dssp HSSCSEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE------EEEEECCGGGTS
T ss_pred cCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc------EEEEEcCchhcc
Confidence 999999999999874 4566778889999999999999999999999999877654 999999998876
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------------ccCCCCC
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------------QRNVPEG 245 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------------~~~~~~~ 245 (282)
+ .++...|+++|++++.|+++++.|+++. +|++|+|+||+++|++.+.. ....+..
T Consensus 144 ~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 218 (255)
T 2q2v_A 144 G---STGKAAYVAAKHGVVGLTKVVGLETATS--NVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQPSL 218 (255)
T ss_dssp C---CTTBHHHHHHHHHHHHHHHHHHHHTTTS--SEEEEEEEESSBCCHHHHHHHHHHHHHTCCHHHHHHHHHTTTCTTC
T ss_pred C---CCCchhHHHHHHHHHHHHHHHHHHhccc--CcEEEEEeeCCCcCcchhhhcccccccccchHHHHHHHHhccCCCC
Confidence 6 5677899999999999999999999988 89999999999999874321 1223455
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+..+|+++|+.+++++++....++|+.+.+||++.
T Consensus 219 ~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~~ 253 (255)
T 2q2v_A 219 AFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGGWL 253 (255)
T ss_dssp CCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHhCCccCCCCCCEEEECCCcc
Confidence 67799999999999998877889999999999974
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-41 Score=286.10 Aligned_cols=242 Identities=18% Similarity=0.230 Sum_probs=199.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc-cccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA-TGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~-~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
+++++|++|||||++|||+++|++|+++|++ |++++|+.+.. +.+.+.....+.++.++++|++|+++++++++++.
T Consensus 3 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 80 (264)
T 3i4f_A 3 LGRFVRHALITAGTKGLGKQVTEKLLAKGYS--VTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAM 80 (264)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred cccccCEEEEeCCCchhHHHHHHHHHHCCCE--EEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4567899999999999999999999999998 88887776543 33555555556789999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|+||||||.... ...+..+.+.++|++.+++|+.+++.+++.+.|.|++++.| +||++||...
T Consensus 81 ~~~g~id~lv~~Ag~~~~-----~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g------~iv~iss~~~ 149 (264)
T 3i4f_A 81 SHFGKIDFLINNAGPYVF-----ERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFG------RIINYGFQGA 149 (264)
T ss_dssp HHHSCCCEEECCCCCCCC-----SCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCTTG
T ss_pred HHhCCCCEEEECCccccc-----CCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCC------eEEEEeechh
Confidence 999999999999994320 24567778889999999999999999999999999877654 8999998733
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFSV 254 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~a 254 (282)
. ...+.++...|+++|++++.|+++++.|+++. +|+|++|+||++.|++.+... ...+..+..+|+++|
T Consensus 150 ~-~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~~~dva 226 (264)
T 3i4f_A 150 D-SAPGWIYRSAFAAAKVGLVSLTKTVAYEEAEY--GITANMVCPGDIIGEMKEATIQEARQLKEHNTPIGRSGTGEDIA 226 (264)
T ss_dssp G-GCCCCTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCCCGGGGSCCHHHHHHC--------CCCCHHHHH
T ss_pred c-ccCCCCCCchhHHHHHHHHHHHHHHHHHhhhc--CcEEEEEccCCccCccchhccHHHHHHHhhcCCCCCCcCHHHHH
Confidence 2 11225667899999999999999999999988 899999999999999866432 234556677999999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
+.+++++++....++|+.+.+|||...
T Consensus 227 ~~v~~l~s~~~~~itG~~i~vdGG~~~ 253 (264)
T 3i4f_A 227 RTISFLCEDDSDMITGTIIEVTGAVDV 253 (264)
T ss_dssp HHHHHHHSGGGTTCCSCEEEESCSCCC
T ss_pred HHHHHHcCcccCCCCCcEEEEcCceee
Confidence 999999998888999999999999753
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-41 Score=287.00 Aligned_cols=237 Identities=18% Similarity=0.203 Sum_probs=205.1
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEE-eecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIA-TCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~-~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++++|++|||||++|||+++|++|+++|++ |++ ..|+.+..+...+.+...+.++.++++|++|+++++++++++.
T Consensus 22 ~~l~~k~vlVTGas~gIG~~la~~l~~~G~~--v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (267)
T 4iiu_A 22 SNAMSRSVLVTGASKGIGRAIARQLAADGFN--IGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEI 99 (267)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999998 644 5566666666555555557789999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhh-cCCCCCccceeEEEEeeccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLK-VGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~-~~~~g~~~~~~~iv~~ss~~ 181 (282)
++++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.+.|. +++. ++||++||..
T Consensus 100 ~~~g~id~li~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~------g~iv~isS~~ 166 (267)
T 4iiu_A 100 AQHGAWYGVVSNAGIAR-------DAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQG------GRIITLSSVS 166 (267)
T ss_dssp HHHCCCSEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC------EEEEEECCHH
T ss_pred HHhCCccEEEECCCCCC-------CCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC------cEEEEEcchH
Confidence 99999999999999875 55677788999999999999999999999998886 3333 4999999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------ccCCCCCCCCChHHHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------QRNVPEGKLFTKEFSV 254 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------~~~~~~~~~~~~~~~a 254 (282)
+..+ .++...|+++|++++.|+++++.|+++. +|++++|+||+++|++.+.. ....+..+..+|+++|
T Consensus 167 ~~~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~p~~~~~~~edva 241 (267)
T 4iiu_A 167 GVMG---NRGQVNYSAAKAGIIGATKALAIELAKR--KITVNCIAPGLIDTGMIEMEESALKEAMSMIPMKRMGQAEEVA 241 (267)
T ss_dssp HHHC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCSTTCCCCHHHHHHHHHTCTTCSCBCHHHHH
T ss_pred hccC---CCCCchhHHHHHHHHHHHHHHHHHHhhc--CeEEEEEEEeeecCCcccccHHHHHHHHhcCCCCCCcCHHHHH
Confidence 8877 6677899999999999999999999988 89999999999999987532 2245566778999999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCccc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.+.+++++....++|+.+.+|||++
T Consensus 242 ~~~~~L~s~~~~~itG~~i~vdGG~~ 267 (267)
T 4iiu_A 242 GLASYLMSDIAGYVTRQVISINGGML 267 (267)
T ss_dssp HHHHHHHSGGGTTCCSCEEEESTTCC
T ss_pred HHHHHHhCCcccCccCCEEEeCCCcC
Confidence 99999999888999999999999975
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-41 Score=286.66 Aligned_cols=235 Identities=20% Similarity=0.300 Sum_probs=188.0
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.|+++||++|||||++|||+++|++|+++|++ |++++|+.++. . ...+.++.++++|++|+++++++++.+.
T Consensus 4 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~---~---~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (257)
T 3tl3_A 4 SMEIRDAVAVVTGGASGLGLATTKRLLDAGAQ--VVVLDIRGEDV---V---ADLGDRARFAAADVTDEAAVASALDLAE 75 (257)
T ss_dssp ------CEEEEETTTSHHHHHHHHHHHHHTCE--EEEEESSCHHH---H---HHTCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred cceecCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCchHHH---H---HhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 47889999999999999999999999999988 99999854322 1 2225689999999999999999999887
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccc----cccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCC--ccceeEEEE
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTL----NKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGI--ERDVAVVAN 176 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~--~~~~~~iv~ 176 (282)
+ ++++|+||||||... .... .+.+.++|++.+++|+.+++++++++.|.|.++.... ....++||+
T Consensus 76 ~-~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~ 147 (257)
T 3tl3_A 76 T-MGTLRIVVNCAGTGN-------AIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIIN 147 (257)
T ss_dssp H-HSCEEEEEECGGGSH-------HHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEE
T ss_pred H-hCCCCEEEECCCCCC-------CcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEE
Confidence 7 899999999999863 2222 2477899999999999999999999999998731000 011249999
Q ss_pred eeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCC-CCC
Q 023441 177 LSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPE-GKL 247 (282)
Q Consensus 177 ~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~-~~~ 247 (282)
+||..+..+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+... ...+. .+.
T Consensus 148 isS~~~~~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~r~ 222 (257)
T 3tl3_A 148 TASVAAFDG---QIGQAAYSASKGGVVGMTLPIARDLASH--RIRVMTIAPGLFDTPLLASLPEEARASLGKQVPHPSRL 222 (257)
T ss_dssp ECCCC--CC---HHHHHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCTTC---CHHHHHHHHHTSSSSCSC
T ss_pred EcchhhcCC---CCCCccHHHHHHHHHHHHHHHHHHhccc--CcEEEEEEecCccChhhhhccHHHHHHHHhcCCCCCCc
Confidence 999988866 5567899999999999999999999988 899999999999999876432 23344 677
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 248 FTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+|+|+|+.+++++++ +.++|+.+.+|||+.
T Consensus 223 ~~p~dva~~v~~l~s~--~~itG~~i~vdGG~~ 253 (257)
T 3tl3_A 223 GNPDEYGALAVHIIEN--PMLNGEVIRLDGAIR 253 (257)
T ss_dssp BCHHHHHHHHHHHHHC--TTCCSCEEEESTTC-
T ss_pred cCHHHHHHHHHHHhcC--CCCCCCEEEECCCcc
Confidence 8999999999999986 799999999999864
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-41 Score=288.85 Aligned_cols=235 Identities=19% Similarity=0.257 Sum_probs=203.1
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCC---ceeEEEeeCCChhHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE---RLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~---~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
+++||++|||||++|||+++|++|+++|++ |++++|+.++.+...+.+...+. ++.++++|++|+++++++++++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGAN--VTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST 80 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHH
Confidence 578999999999999999999999999987 99999998777665544444344 7999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCccc----ccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETT----LNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~----~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
.++++++|+||||||... ..+ ..+.+.++|++.+++|+.+++.+++.+.|.|.+++ | +||++
T Consensus 81 ~~~~g~iD~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g------~iv~i 146 (280)
T 1xkq_A 81 LKQFGKIDVLVNNAGAAI-------PDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-G------EIVNV 146 (280)
T ss_dssp HHHHSCCCEEEECCCCCC-------CCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C------EEEEE
T ss_pred HHhcCCCCEEEECCCCCC-------CCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-C------cEEEe
Confidence 999999999999999874 233 56778899999999999999999999999997654 4 99999
Q ss_pred eccccccCCCCC-CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-----------------c
Q 023441 178 SARVGSIGDNRL-GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-----------------Q 239 (282)
Q Consensus 178 ss~~~~~~~~~~-~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-----------------~ 239 (282)
||..+..+ . ++...|+++|++++.|+++++.|++++ +|++|+|+||+++|++.... .
T Consensus 147 sS~~~~~~---~~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 221 (280)
T 1xkq_A 147 SSIVAGPQ---AQPDFLYYAIAKAALDQYTRSTAIDLAKF--GIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHK 221 (280)
T ss_dssp CCGGGSSS---CCCSSHHHHHHHHHHHHHHHHHHHHHHTT--TCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCT
T ss_pred cCccccCC---CCCcccHHHHHHHHHHHHHHHHHHHhccC--CeEEEEEeeCcCcCCcccccccccccccchHHHHHHHH
Confidence 99988765 3 567899999999999999999999988 89999999999999975432 1
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhhc-CCCCCCceeecCCccc
Q 023441 240 RNVPEGKLFTKEFSVQKLLNIINNI-KSHDNGKFFAWDGQEI 280 (282)
Q Consensus 240 ~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~g~~~~~d~~~~ 280 (282)
...+..+..+|+++|+.+++++++. ...++|+.+.+||++.
T Consensus 222 ~~~p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG~~ 263 (280)
T 1xkq_A 222 ECIPIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTS 263 (280)
T ss_dssp TTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred cCCCCCCCCCHHHHHHHHHHhcCcccccCccCCeEEECCCcc
Confidence 1234556789999999999999887 7899999999999864
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-41 Score=293.80 Aligned_cols=241 Identities=19% Similarity=0.178 Sum_probs=202.0
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEee-cCCCcccccccccc-cCCCceeEEEeeCCChh----------
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC-RNPNGATGLLDLKN-RFPERLDVLQLDLTVES---------- 92 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~-r~~~~~~~~~~~~~-~~~~~v~~~~~Dls~~~---------- 92 (282)
+++||++|||||++|||+++|++|+++|++ |++++ |+.+..+.+.+.+. ..+.++.++++|++|.+
T Consensus 43 ~l~~k~~lVTGas~GIG~aia~~La~~G~~--Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 120 (328)
T 2qhx_A 43 APTVPVALVTGAAKRLGRSIAEGLHAEGYA--VCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGS 120 (328)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccccccc
Confidence 388999999999999999999999999987 99999 98877666554443 44668999999999999
Q ss_pred -------HHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccc--------------hhhhhhhhhhhhcHHHH
Q 023441 93 -------TIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVE--------------KSSLMLAYEVNAVGPIL 151 (282)
Q Consensus 93 -------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~n~~~~~~ 151 (282)
+++++++++.++++++|+||||||+.. ..++.+.+ .++|+..+++|+.+++.
T Consensus 121 ~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~-------~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~ 193 (328)
T 2qhx_A 121 APVTLFTRCAELVAACYTHWGRCDVLVNNASSFY-------PTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYF 193 (328)
T ss_dssp CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCC-------CCCSCC-------------CHHHHHHHHHHHHHTHHHHH
T ss_pred cccccHHHHHHHHHHHHHhcCCCCEEEECCCCCC-------CCChhhcCccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875 33444555 78999999999999999
Q ss_pred HHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEeccccc
Q 023441 152 VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVD 231 (282)
Q Consensus 152 ~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~ 231 (282)
+++.+.|.|.+++.......++||++||..+..+ .++...|+++|++++.|+++++.|+++. +|+||+|+||+++
T Consensus 194 l~~~~~~~m~~~~~~~~~~~g~IV~isS~~~~~~---~~~~~~Y~asKaal~~l~~~la~el~~~--gIrvn~v~PG~v~ 268 (328)
T 2qhx_A 194 LIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQP---LLGYTIYTMAKGALEGLTRSAALELAPL--QIRVNGVGPGLSV 268 (328)
T ss_dssp HHHHHHHHHHHSCGGGSCSCEEEEEECCTTTTSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESSBS
T ss_pred HHHHHHHHHHhcCCcCCCCCcEEEEECchhhccC---CCCcHHHHHHHHHHHHHHHHHHHHHhhc--CcEEEEEecCccc
Confidence 9999999998765100011249999999988766 5677899999999999999999999988 8999999999999
Q ss_pred CCCCccc-------ccCCCCC-CCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 232 TDLSRPF-------QRNVPEG-KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 232 t~~~~~~-------~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|++ +.. ....+.. ...+|+++|+.+++++++....++|+.+.+|||+.
T Consensus 269 T~~-~~~~~~~~~~~~~~p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~ 324 (328)
T 2qhx_A 269 LVD-DMPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 324 (328)
T ss_dssp CCC-CSCHHHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCc-cccHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCCcc
Confidence 998 432 1234455 67899999999999999888899999999999864
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=279.48 Aligned_cols=227 Identities=23% Similarity=0.353 Sum_probs=188.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||++|||||++|||++++++|+++|++ |++++|+.+. ... .+.++.+|++|+++++++++++.+
T Consensus 3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~--V~~~~r~~~~--------~~~--~~~~~~~D~~d~~~~~~~~~~~~~ 70 (250)
T 2fwm_X 3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAK--VTGFDQAFTQ--------EQY--PFATEVMDVADAAQVAQVCQRLLA 70 (250)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCCCS--------SCC--SSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCchhh--------hcC--CceEEEcCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999987 9999998652 111 278899999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||..+.
T Consensus 71 ~~g~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g------~iv~isS~~~~ 137 (250)
T 2fwm_X 71 ETERLDALVNAAGILR-------MGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGG------AIVTVASDAAH 137 (250)
T ss_dssp HCSCCCEEEECCCCCC-------CCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC------EEEEECCGGGT
T ss_pred HcCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCC------EEEEECchhhC
Confidence 9999999999999874 4556677889999999999999999999999999876554 99999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc------c------------CCCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ------R------------NVPEG 245 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~------~------------~~~~~ 245 (282)
.+ .++...|+++|++++.|+++++.|+++. +|++|+|+||+++|++.+... . ..+..
T Consensus 138 ~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 212 (250)
T 2fwm_X 138 TP---RIGMSAYGASKAALKSLALSVGLELAGS--GVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLG 212 (250)
T ss_dssp SC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCC---------------------------------
T ss_pred CC---CCCCchHHHHHHHHHHHHHHHHHHhCcc--CCEEEEEECCcccCccccccccChhHHHHHHhhhhhcccccCCCC
Confidence 66 5677899999999999999999999988 899999999999999854321 1 12334
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+..+|+++|+.+++++++....++|+.+.+||++.
T Consensus 213 ~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 247 (250)
T 2fwm_X 213 KIARPQEIANTILFLASDLASHITLQDIVVDGGST 247 (250)
T ss_dssp ---CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCcCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 56799999999999999888899999999999863
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=282.97 Aligned_cols=226 Identities=19% Similarity=0.230 Sum_probs=187.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++|++|||||++|||+++|++|+++|++ |++++|+.+++++..+.+. .++.++++|++|+++++++++++.++++
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~g 76 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQ--VSMMGRRYQRLQQQELLLG---NAVIGIVADLAHHEDVDVAFAAAVEWGG 76 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHG---GGEEEEECCTTSHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHhc---CCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999988 9999999887766555442 3699999999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|+||||||... ..++.+.+.++|++.+++|+.+++.+++.+.|.|++++ ++||++||..+..+
T Consensus 77 ~id~lvnnAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-------~~iv~isS~~~~~~- 141 (235)
T 3l6e_A 77 LPELVLHCAGTGE-------FGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG-------GVLANVLSSAAQVG- 141 (235)
T ss_dssp SCSEEEEECCCC-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-------EEEEEECCEECCSS-
T ss_pred CCcEEEECCCCCC-------CCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-------CEEEEEeCHHhcCC-
Confidence 9999999999874 55677788999999999999999999999999997754 39999999998877
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhh-cC
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINN-IK 265 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~ 265 (282)
.++...|++||+++++|+++++.|+++. +|++|+|+||+++|++...... .+.....+|+++|+.++++++. ..
T Consensus 142 --~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~v~~v~PG~v~T~~~~~~~~-~~~~~~~~pedvA~~v~~l~~~~~~ 216 (235)
T 3l6e_A 142 --KANESLYCASKWGMRGFLESLRAELKDS--PLRLVNLYPSGIRSEFWDNTDH-VDPSGFMTPEDAAAYMLDALEARSS 216 (235)
T ss_dssp --CSSHHHHHHHHHHHHHHHHHHHHHTTTS--SEEEEEEEEEEECCCC------------CBCHHHHHHHHHHHTCCCSS
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHhhcc--CCEEEEEeCCCccCcchhccCC-CCCcCCCCHHHHHHHHHHHHhCCCC
Confidence 6778899999999999999999999988 8999999999999998765433 3345678999999999999984 44
Q ss_pred CCCCCceeecCC
Q 023441 266 SHDNGKFFAWDG 277 (282)
Q Consensus 266 ~~~~g~~~~~d~ 277 (282)
..++|..+....
T Consensus 217 ~~i~~i~~~~~~ 228 (235)
T 3l6e_A 217 CHVTDLFIGRNE 228 (235)
T ss_dssp EEEEEEEEEECC
T ss_pred cceeeEEEecCC
Confidence 567777666443
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=282.24 Aligned_cols=231 Identities=20% Similarity=0.242 Sum_probs=199.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||++|||||++|||++++++|+++|++ |++++|+.+. +...+.+. + .++++|++|+++++++++++.+
T Consensus 2 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~-~~~~~~~~----~-~~~~~D~~~~~~~~~~~~~~~~ 73 (256)
T 2d1y_A 2 GLFAGKGVLVTGGARGIGRAIAQAFAREGAL--VALCDLRPEG-KEVAEAIG----G-AFFQVDLEDERERVRFVEEAAY 73 (256)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSTTH-HHHHHHHT----C-EEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCChhH-HHHHHHhh----C-CEEEeeCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999987 9999999876 44333332 4 7899999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||..+.
T Consensus 74 ~~g~iD~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g------~iv~isS~~~~ 140 (256)
T 2d1y_A 74 ALGRVDVLVNNAAIAA-------PGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGG------AIVNVASVQGL 140 (256)
T ss_dssp HHSCCCEEEECCCCCC-------CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCE------EEEEECCGGGT
T ss_pred HcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------EEEEEcccccc
Confidence 9999999999999874 4556677889999999999999999999999999877654 99999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc------c--------cCCCCCCCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF------Q--------RNVPEGKLFT 249 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~------~--------~~~~~~~~~~ 249 (282)
.+ .++...|++||++++.|+++++.|+++. +|++|+|+||+++|++.... . ...+..+..+
T Consensus 141 ~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (256)
T 2d1y_A 141 FA---EQENAAYNASKGGLVNLTRSLALDLAPL--RIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGK 215 (256)
T ss_dssp SB---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCHHHHHHHC--------CHHHHTTSTTSSCBC
T ss_pred CC---CCCChhHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEeeCCccCchhhhccccccCCHHHHHHHHhcCCCCCCcC
Confidence 66 5677899999999999999999999988 89999999999999874331 0 1124456779
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+++|+.+++++++....++|+.+.+||++.
T Consensus 216 ~~dvA~~~~~l~s~~~~~~~G~~~~v~gG~~ 246 (256)
T 2d1y_A 216 PEEVAEAVLFLASEKASFITGAILPVDGGMT 246 (256)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHHhCchhcCCCCCEEEECCCcc
Confidence 9999999999998877899999999999863
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=285.75 Aligned_cols=238 Identities=20% Similarity=0.285 Sum_probs=203.0
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc-ccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG-ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~-~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
..++++||++|||||++|||+++|++|+++|++ |++++|+.++ .+...+.+...+.++.++.+|++|.+++++++++
T Consensus 23 ~~~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 100 (283)
T 1g0o_A 23 QSASLEGKVALVTGAGRGIGREMAMELGRRGCK--VIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEE 100 (283)
T ss_dssp GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHH
Confidence 456789999999999999999999999999987 9999998754 3334444445567899999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.+.++++|+||||||... ..++.+.+.++|++.+++|+.+++++++++.|.|. +.| +||++||.
T Consensus 101 ~~~~~g~iD~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~--~~g------~iv~isS~ 165 (283)
T 1g0o_A 101 AVKIFGKLDIVCSNSGVVS-------FGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLE--IGG------RLILMGSI 165 (283)
T ss_dssp HHHHHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSC--TTC------EEEEECCG
T ss_pred HHHHcCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCC------eEEEEech
Confidence 9999999999999999874 45667788899999999999999999999999983 223 99999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------------cc-
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------------QR- 240 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------------~~- 240 (282)
.+..+. .+....|++||++++.|+++++.|++++ +|+||+|+||+++|++.... ..
T Consensus 166 ~~~~~~--~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
T 1g0o_A 166 TGQAKA--VPKHAVYSGSKGAIETFARCMAIDMADK--KITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAV 241 (283)
T ss_dssp GGTCSS--CSSCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHH
T ss_pred hhccCC--CCCCcchHHHHHHHHHHHHHHHHHhccc--CeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhh
Confidence 887652 1236789999999999999999999988 89999999999999874321 01
Q ss_pred -CCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 241 -NVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 241 -~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
..+..+..+|+++|+.+.+++++....++|+.+.+|||+.
T Consensus 242 ~~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdgG~~ 282 (283)
T 1g0o_A 242 QWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGAC 282 (283)
T ss_dssp HSCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCC
T ss_pred cCCCCCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCCcc
Confidence 3345567799999999999999888899999999999863
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=281.31 Aligned_cols=232 Identities=24% Similarity=0.365 Sum_probs=201.4
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||++|||||++|||++++++|+++|++ |++.+|+.++.+...+.+. .++.++++|++|+++++++++++.++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (260)
T 1nff_A 4 RLTGKVALVSGGARGMGASHVRAMVAEGAK--VVFGDILDEEGKAMAAELA---DAARYVHLDVTQPAQWKAAVDTAVTA 78 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHTG---GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHhh---cCceEEEecCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999987 9999999876655433332 35889999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||..+..
T Consensus 79 ~g~iD~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g------~iv~isS~~~~~ 145 (260)
T 1nff_A 79 FGGLHVLVNNAGILN-------IGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRG------SIINISSIEGLA 145 (260)
T ss_dssp HSCCCEEEECCCCCC-------CBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGGTS
T ss_pred cCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC------EEEEEeehhhcC
Confidence 999999999999874 4556677889999999999999999999999999876543 999999998876
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----CCCCCCCCChHHHHHHHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----NVPEGKLFTKEFSVQKLLNI 260 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----~~~~~~~~~~~~~a~~~~~~ 260 (282)
+ .++...|+++|++++.|+++++.|++++ +|++++|+||++.|++.+ ... ..+..+..+|+++|+.+.++
T Consensus 146 ~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~-~~~~~~~~~~~~~~~~~~dvA~~v~~l 219 (260)
T 1nff_A 146 G---TVACHGYTATKFAVRGLTKSTALELGPS--GIRVNSIHPGLVKTPMTD-WVPEDIFQTALGRAAEPVEVSNLVVYL 219 (260)
T ss_dssp C---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCSGGGT-TSCTTCSCCSSSSCBCHHHHHHHHHHH
T ss_pred C---CCCchhHHHHHHHHHHHHHHHHHHhCcc--CcEEEEEEeCCCCCCccc-cchhhHHhCccCCCCCHHHHHHHHHHH
Confidence 6 5667899999999999999999999988 899999999999999854 111 22445667899999999999
Q ss_pred HhhcCCCCCCceeecCCccc
Q 023441 261 INNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 261 ~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++....++|+.+.+||++.
T Consensus 220 ~s~~~~~~~G~~~~v~gG~~ 239 (260)
T 1nff_A 220 ASDESSYSTGAEFVVDGGTV 239 (260)
T ss_dssp HSGGGTTCCSCEEEESTTGG
T ss_pred hCccccCCcCCEEEECCCee
Confidence 98877889999999999864
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=285.46 Aligned_cols=241 Identities=19% Similarity=0.243 Sum_probs=207.2
Q ss_pred cccccccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCCCcc-cc-cccccccCCCceeEEEeeCCChhHHHH
Q 023441 21 SASVKWKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGA-TG-LLDLKNRFPERLDVLQLDLTVESTIEA 96 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~~~~-~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~ 96 (282)
...++++||++|||||+ +|||+++|++|+++|++ |++++|+.... ++ ..++....+.++.++++|++|++++++
T Consensus 13 ~~~~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~--v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~ 90 (267)
T 3gdg_A 13 LDQLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAA--VAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEK 90 (267)
T ss_dssp HHHHCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCE--EEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHH
T ss_pred ccccCcCCCEEEEECCCCCCChHHHHHHHHHHCCCe--EEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHH
Confidence 34578999999999999 99999999999999988 99998887665 33 333333446789999999999999999
Q ss_pred HHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEE
Q 023441 97 SAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVAN 176 (282)
Q Consensus 97 ~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~ 176 (282)
+++++.++++++|+||||||+.. ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||+
T Consensus 91 ~~~~~~~~~g~id~li~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g------~iv~ 157 (267)
T 3gdg_A 91 LVKDVVADFGQIDAFIANAGATA-------DSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTG------SLVI 157 (267)
T ss_dssp HHHHHHHHTSCCSEEEECCCCCC-------CSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC------EEEE
T ss_pred HHHHHHHHcCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCc------eEEE
Confidence 99999999999999999999875 4556677889999999999999999999999999887655 9999
Q ss_pred eeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCC
Q 023441 177 LSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLF 248 (282)
Q Consensus 177 ~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~ 248 (282)
+||..+..+.. .++...|++||++++.|+++++.|+++. |+||+|+||+++|++.+... ...+..+..
T Consensus 158 isS~~~~~~~~-~~~~~~Y~~sK~a~~~~~~~la~e~~~~---i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~r~~ 233 (267)
T 3gdg_A 158 TASMSGHIANF-PQEQTSYNVAKAGCIHMARSLANEWRDF---ARVNSISPGYIDTGLSDFVPKETQQLWHSMIPMGRDG 233 (267)
T ss_dssp ECCGGGTSCCS-SSCCHHHHHHHHHHHHHHHHHHHHTTTT---CEEEEEEECCEECSCGGGSCHHHHHHHHTTSTTSSCE
T ss_pred EccccccccCC-CCCCCcchHHHHHHHHHHHHHHHHhccC---cEEEEEECCccccchhhhCCHHHHHHHHhcCCCCCCc
Confidence 99998876532 1466889999999999999999999764 89999999999999875432 234556677
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+++|+.+++++++....++|+.+.+|||+.
T Consensus 234 ~~~dva~~~~~l~s~~~~~itG~~i~vdgG~~ 265 (267)
T 3gdg_A 234 LAKELKGAYVYFASDASTYTTGADLLIDGGYT 265 (267)
T ss_dssp ETHHHHHHHHHHHSTTCTTCCSCEEEESTTGG
T ss_pred CHHHHHhHhheeecCccccccCCEEEECCcee
Confidence 89999999999999888999999999999974
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=284.65 Aligned_cols=230 Identities=20% Similarity=0.252 Sum_probs=198.0
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||++|||||++|||++++++|+++|++ |++++|+.++.++..+.+ +.++.++++|++|+++++++++++.++
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGAS--LVAVDREERLLAEAVAAL---EAEAIAVVADVSDPKAVEAVFAEALEE 77 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHTC---CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHh---cCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999987 999999987665544433 257899999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.| ++ .| +||++||..+.
T Consensus 78 ~g~iD~lvnnAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~-~g------~iv~isS~~~~- 141 (263)
T 2a4k_A 78 FGRLHGVAHFAGVAH-------SALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVL-EE-GG------SLVLTGSVAGL- 141 (263)
T ss_dssp HSCCCEEEEGGGGTT-------TTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-CT-TC------EEEEECCCTTC-
T ss_pred cCCCcEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHH-hc-CC------EEEEEecchhc-
Confidence 999999999999874 4556677889999999999999999999999999 44 33 99999999887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFSVQK 256 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~a~~ 256 (282)
+ .++...|++||++++.|+++++.|+++. +|++|+|+||+++|++.+... ...+..+..+|+++|+.
T Consensus 142 ~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~ 216 (263)
T 2a4k_A 142 G---AFGLAHYAAGKLGVVGLARTLALELARK--GVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPLGRAGRPEEVAQA 216 (263)
T ss_dssp C---HHHHHHHHHCSSHHHHHHHHHHHHHTTT--TCEEEEEEECSBCCGGGTTSCHHHHHHHHHTSTTCSCBCHHHHHHH
T ss_pred C---CCCcHHHHHHHHHHHHHHHHHHHHhhhh--CcEEEEEEeCcCcCchhhhcCHHHHHHHHhcCCCCCCcCHHHHHHH
Confidence 5 4567899999999999999999999988 899999999999999865421 12345667899999999
Q ss_pred HHHHHhhcCCCCCCceeecCCccc
Q 023441 257 LLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 257 ~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++++++....++|+.+.+||++.
T Consensus 217 v~~l~s~~~~~~tG~~i~vdgG~~ 240 (263)
T 2a4k_A 217 ALFLLSEESAYITGQALYVDGGRS 240 (263)
T ss_dssp HHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHhCccccCCcCCEEEECCCcc
Confidence 999999888899999999999864
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=279.96 Aligned_cols=243 Identities=18% Similarity=0.277 Sum_probs=208.4
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
+..|+++||++|||||++|||++++++|+++|++ |++++|+.+..+...+.+...+.++.++++|++|++++++++++
T Consensus 6 ~~~~~l~~k~vlItGasggiG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 83 (260)
T 3awd_A 6 MEKLRLDNRVAIVTGGAQNIGLACVTALAEAGAR--VIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRS 83 (260)
T ss_dssp TGGGCCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 4457889999999999999999999999999987 99999998766655555544566899999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.++++++|+||||||... +..+..+.+.++|++.+++|+.+++++++.+.|.|.+++. ++||++||.
T Consensus 84 ~~~~~~~id~vi~~Ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~------~~iv~~sS~ 151 (260)
T 3awd_A 84 VHEQEGRVDILVACAGICI------SEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQ------GVIVAIGSM 151 (260)
T ss_dssp HHHHHSCCCEEEECCCCCC------CSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC------EEEEEECCG
T ss_pred HHHHcCCCCEEEECCCCCC------CCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCC------CEEEEEecc
Confidence 9999999999999999863 1344556778899999999999999999999999876554 399999999
Q ss_pred ccccCCCCCCCc--ccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc-ccc---------cCCCCCCCC
Q 023441 181 VGSIGDNRLGGW--HSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR-PFQ---------RNVPEGKLF 248 (282)
Q Consensus 181 ~~~~~~~~~~~~--~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~-~~~---------~~~~~~~~~ 248 (282)
.+..+ .+.. ..|+++|++++.++++++.|+++. +|++++++||++.|++.+ ... ...+.....
T Consensus 152 ~~~~~---~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~--gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (260)
T 3awd_A 152 SGLIV---NRPQQQAAYNASKAGVHQYIRSLAAEWAPH--GIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTPMGRVG 226 (260)
T ss_dssp GGTSC---CSSSCCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTCTTSSCB
T ss_pred hhccc---CCCCCccccHHHHHHHHHHHHHHHHHhhhc--CeEEEEEEeeeeccchhhcccCChHHHHHHHhcCCcCCCC
Confidence 88765 3333 789999999999999999999988 899999999999999876 211 123455678
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
+|+++|+.+.++++.....++|+.+.+||++..|
T Consensus 227 ~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~ 260 (260)
T 3awd_A 227 QPDEVASVVQFLASDAASLMTGAIVNVDAGFTVW 260 (260)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTTC
T ss_pred CHHHHHHHHHHHhCchhccCCCcEEEECCceecC
Confidence 9999999999999887788999999999999988
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=279.61 Aligned_cols=230 Identities=23% Similarity=0.355 Sum_probs=192.9
Q ss_pred ccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHH
Q 023441 20 ASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 20 ~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
....++++||++|||||++|||++++++|+++|++ |++.+|+.++.+.+. .+++|++|+++++++++
T Consensus 7 ~~~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~-----------~~~~D~~~~~~~~~~~~ 73 (247)
T 1uzm_A 7 EGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHK--VAVTHRGSGAPKGLF-----------GVEVDVTDSDAVDRAFT 73 (247)
T ss_dssp --CCCCCCCCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESSSCCCTTSE-----------EEECCTTCHHHHHHHHH
T ss_pred CcccccCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCChHHHHHhc-----------CeeccCCCHHHHHHHHH
Confidence 34456789999999999999999999999999987 999999876654321 38899999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.++++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||
T Consensus 74 ~~~~~~g~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g------~iv~isS 140 (247)
T 1uzm_A 74 AVEEHQGPVEVLVSNAGLSA-------DAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFG------RMIFIGS 140 (247)
T ss_dssp HHHHHHSSCSEEEEECSCCC------------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE------EEEEECC
T ss_pred HHHHHcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC------EEEEECC
Confidence 99999999999999999874 4556678889999999999999999999999999876654 9999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------ccCCCCCCCCChH
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--------QRNVPEGKLFTKE 251 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--------~~~~~~~~~~~~~ 251 (282)
..+..+ .++...|+++|++++.|+++++.|++++ +|++|+|+||+++|++.+.. ....+..+..+|+
T Consensus 141 ~~~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~ 215 (247)
T 1uzm_A 141 VSGLWG---IGNQANYAASKAGVIGMARSIARELSKA--NVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPA 215 (247)
T ss_dssp CCC--------CCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCHHHHHSCHHHHHHHGGGCTTCSCBCHH
T ss_pred HhhccC---CCCChhHHHHHHHHHHHHHHHHHHhhhc--CcEEEEEEeCCCcccchhhcCHHHHHHHHhcCCCCCCcCHH
Confidence 988766 5667899999999999999999999988 89999999999999975432 1223456678999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++|+.+++++++....++|+.+.+||++.
T Consensus 216 dvA~~~~~l~s~~~~~~~G~~i~vdgG~~ 244 (247)
T 1uzm_A 216 EVAGVVSFLASEDASYISGAVIPVDGGMG 244 (247)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHcCccccCCcCCEEEECCCcc
Confidence 99999999999877899999999999863
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=281.63 Aligned_cols=235 Identities=19% Similarity=0.237 Sum_probs=203.7
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++++||++|||||++|||++++++|+++|++ |++++|+.++.+...+.+. .++.++++|++|+++++++++++.
T Consensus 7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~d~~~v~~~~~~~~ 81 (263)
T 3ak4_A 7 IFDLSGRKAIVTGGSKGIGAAIARALDKAGAT--VAIADLDVMAAQAVVAGLE---NGGFAVEVDVTKRASVDAAMQKAI 81 (263)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHTCT---TCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHh---cCCeEEEEeCCCHHHHHHHHHHHH
Confidence 46788999999999999999999999999987 9999998876554433332 368899999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeeccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARV 181 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~~ 181 (282)
+++|++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|.+++ .| +||++||..
T Consensus 82 ~~~g~iD~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g------~iv~isS~~ 148 (263)
T 3ak4_A 82 DALGGFDLLCANAGVST-------MRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKG------VIVNTASLA 148 (263)
T ss_dssp HHHTCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCC------EEEEECCGG
T ss_pred HHcCCCCEEEECCCcCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCe------EEEEecccc
Confidence 99999999999999874 45667788899999999999999999999999998765 44 999999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------------ccCC
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------------QRNV 242 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------------~~~~ 242 (282)
+..+ .+....|+++|++++.|+++++.|+++. +|++++|+||+++|++.+.. ....
T Consensus 149 ~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (263)
T 3ak4_A 149 AKVG---APLLAHYSASKFAVFGWTQALAREMAPK--NIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLT 223 (263)
T ss_dssp GTSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred cccC---CCCchhHHHHHHHHHHHHHHHHHHHhHc--CeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHhcC
Confidence 8766 5667899999999999999999999988 89999999999999975321 1123
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 243 PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+..+..+|+++|+.+++++++....++|+.+.+||++.
T Consensus 224 p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 261 (263)
T 3ak4_A 224 PLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGGVR 261 (263)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECcCEe
Confidence 55667899999999999998877899999999999864
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=283.07 Aligned_cols=226 Identities=18% Similarity=0.248 Sum_probs=194.4
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++++|++|||||++|||+++|++|+++|++ |++++|+.++++... ..++.++++|++|.++++++++++.+
T Consensus 12 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (266)
T 3p19_A 12 RGSMKKLVVITGASSGIGEAIARRFSEEGHP--LLLLARRVERLKALN------LPNTLCAQVDVTDKYTFDTAITRAEK 83 (266)
T ss_dssp ---CCCEEEEESTTSHHHHHHHHHHHHTTCC--EEEEESCHHHHHTTC------CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHhh------cCCceEEEecCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999998 999999876654322 23788999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++|++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||..+.
T Consensus 84 ~~g~iD~lvnnAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g------~IV~isS~~~~ 150 (266)
T 3p19_A 84 IYGPADAIVNNAGMML-------LGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCG------TIINISSIAGK 150 (266)
T ss_dssp HHCSEEEEEECCCCCC-------CCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC------EEEEECCGGGT
T ss_pred HCCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------EEEEEcChhhC
Confidence 9999999999999875 5566778889999999999999999999999999887665 99999999988
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC----------CCCCCCCChHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN----------VPEGKLFTKEFS 253 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~----------~~~~~~~~~~~~ 253 (282)
.+ .++...|++||+++++|+++++.|++++ +|+||+|+||+++|++....... .+..+..+|+|+
T Consensus 151 ~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~r~~~pedv 225 (266)
T 3p19_A 151 KT---FPDHAAYCGTKFAVHAISENVREEVAAS--NVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWRVDMGGVLAADDV 225 (266)
T ss_dssp SC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred CC---CCCCchHHHHHHHHHHHHHHHHHHhccc--CcEEEEEeeCccccchhhcccchhhhHHHHhhcccccCCCCHHHH
Confidence 76 6777899999999999999999999998 89999999999999987653221 245567899999
Q ss_pred HHHHHHHHhhcCCCCCCceeec
Q 023441 254 VQKLLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~ 275 (282)
|+.++++++.......+.....
T Consensus 226 A~av~~l~~~~~~~~~~~i~i~ 247 (266)
T 3p19_A 226 ARAVLFAYQQPQNVCIREIALA 247 (266)
T ss_dssp HHHHHHHHHSCTTEEEEEEEEE
T ss_pred HHHHHHHHcCCCCccceeeEEe
Confidence 9999999998776655555543
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-41 Score=288.13 Aligned_cols=237 Identities=18% Similarity=0.198 Sum_probs=189.8
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC-CCceeEEEeeCCChhHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-PERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~-~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
...+++||++|||||++|||+++|++|+++|++ |++++|+.+..+...+.+... +..+.++++|++|++++++++++
T Consensus 27 ~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 104 (281)
T 4dry_A 27 GKGSGEGRIALVTGGGTGVGRGIAQALSAEGYS--VVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAA 104 (281)
T ss_dssp -------CEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 346789999999999999999999999999988 999999988776655444332 23469999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.+++|++|+||||||... ...++.+.+.++|++.+++|+.+++++++.+.|.|.+++.+ .++||++||.
T Consensus 105 ~~~~~g~iD~lvnnAG~~~------~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~----~g~IV~isS~ 174 (281)
T 4dry_A 105 VRAEFARLDLLVNNAGSNV------PPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPR----GGRIINNGSI 174 (281)
T ss_dssp HHHHHSCCSEEEECCCCCC------CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSC----CEEEEEECCG
T ss_pred HHHHcCCCCEEEECCCCCC------CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC----CcEEEEECCH
Confidence 9999999999999999864 23567788899999999999999999999999999876510 1499999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-------CCCCCCCCChHHH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-------NVPEGKLFTKEFS 253 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-------~~~~~~~~~~~~~ 253 (282)
.+..+ .++...|++||+++++|+++++.|++++ +|+||+|+||+++|++.+.... ..+..+..+|+|+
T Consensus 175 ~~~~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pedv 249 (281)
T 4dry_A 175 SAQTP---RPNSAPYTATKHAITGLTKSTALDGRMH--DIACGQIDIGNAATDMTARMSTGVLQANGEVAAEPTIPIEHI 249 (281)
T ss_dssp GGTCC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEEECBCC-------CEEECTTSCEEECCCBCHHHH
T ss_pred HhCCC---CCCChhHHHHHHHHHHHHHHHHHHhccc--CeEEEEEEECcCcChhhhhhcchhhhhhhcccccCCCCHHHH
Confidence 98876 6778899999999999999999999998 8999999999999998765422 1233456799999
Q ss_pred HHHHHHHHhhcC-CCCCCceeec
Q 023441 254 VQKLLNIINNIK-SHDNGKFFAW 275 (282)
Q Consensus 254 a~~~~~~~~~~~-~~~~g~~~~~ 275 (282)
|+.++++++... ..+++..+..
T Consensus 250 A~~v~fL~s~~~~~~i~~~~i~p 272 (281)
T 4dry_A 250 AEAVVYMASLPLSANVLTMTVMA 272 (281)
T ss_dssp HHHHHHHHHSCTTEEEEEEEEEE
T ss_pred HHHHHHHhCCCccCccccEEEEe
Confidence 999999998654 3444544443
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=283.22 Aligned_cols=223 Identities=17% Similarity=0.206 Sum_probs=181.8
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||++|||||++|||+++|++|+++|++ |++++|+.+.+++..+.+ +.++.++++|++|+++++++++++.++
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 99 (272)
T 4dyv_A 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYG--VALAGRRLDALQETAAEI---GDDALCVPTDVTDPDSVRALFTATVEK 99 (272)
T ss_dssp ---CCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHH---TSCCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHh---CCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999988 999999987766554444 468999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
+|++|+||||||... +..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.+ .++||++||..+..
T Consensus 100 ~g~iD~lVnnAg~~~------~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~----~g~IV~isS~~~~~ 169 (272)
T 4dyv_A 100 FGRVDVLFNNAGTGA------PAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPR----GGRIINNGSISATS 169 (272)
T ss_dssp HSCCCEEEECCCCCC------CSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSC----CEEEEEECCSSTTS
T ss_pred cCCCCEEEECCCCCC------CCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCC----CcEEEEECchhhcC
Confidence 999999999999864 23567788899999999999999999999999999876520 14999999999887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC-------CCCCCCCChHHHHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN-------VPEGKLFTKEFSVQKL 257 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~-------~~~~~~~~~~~~a~~~ 257 (282)
+ .++...|++||+++++|+++++.|+++. +|++|+|+||+++|++.+..... .+..+..+|+|+|+.+
T Consensus 170 ~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~v 244 (272)
T 4dyv_A 170 P---RPYSAPYTATKHAITGLTKSTSLDGRVH--DIACGQIDIGNADTPMAQKMKAGVPQADLSIKVEPVMDVAHVASAV 244 (272)
T ss_dssp C---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEEEECC------------------------CHHHHHHHH
T ss_pred C---CCCchHHHHHHHHHHHHHHHHHHHhCcc--CEEEEEEEECcccChhhhhhcccchhhhhcccccCCCCHHHHHHHH
Confidence 6 6677899999999999999999999998 89999999999999987654322 2334567999999999
Q ss_pred HHHHhhcCCC
Q 023441 258 LNIINNIKSH 267 (282)
Q Consensus 258 ~~~~~~~~~~ 267 (282)
+++++.....
T Consensus 245 ~fL~s~~~~~ 254 (272)
T 4dyv_A 245 VYMASLPLDA 254 (272)
T ss_dssp HHHHHSCTTS
T ss_pred HHHhCCCCcC
Confidence 9999976543
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=279.99 Aligned_cols=233 Identities=22% Similarity=0.262 Sum_probs=202.9
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEe-ecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT-CRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~-~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++||++|||||++|||+++|++|+++|++ |++. .|+.+..+...+.+...+.++.++.+|++|.++++++++++.+.
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDGAL--VAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNE 82 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCe--EEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHH
Confidence 67999999999999999999999999987 7664 66666666666555666778999999999999999999999887
Q ss_pred cC------CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 105 YG------SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 105 ~~------~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
++ ++|+||||||... ..+..+.+.+.|++.+++|+.+++++++.+.|.|.+. ++||++|
T Consensus 83 ~~~~~~~~~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--------~~iv~is 147 (255)
T 3icc_A 83 LQNRTGSTKFDILINNAGIGP-------GAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN--------SRIINIS 147 (255)
T ss_dssp HHHHHSSSCEEEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE--------EEEEEEC
T ss_pred hcccccCCcccEEEECCCCCC-------CCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCC--------CEEEEeC
Confidence 74 4999999999874 5667778899999999999999999999999998542 3899999
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------CCCCCCCC
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------NVPEGKLF 248 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------~~~~~~~~ 248 (282)
|..+..+ .+....|++||++++.|+++++.|+++. +|+|++|+||+++|++.+.... ..+..+..
T Consensus 148 S~~~~~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (255)
T 3icc_A 148 SAATRIS---LPDFIAYSMTKGAINTMTFTLAKQLGAR--GITVNAILPGFVKTDMNAELLSDPMMKQYATTISAFNRLG 222 (255)
T ss_dssp CGGGTSC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHTSTTSSCB
T ss_pred ChhhccC---CCCcchhHHhHHHHHHHHHHHHHHHHhc--CeEEEEEEEeeecccchhhhcccHHHHHhhhccCCcCCCC
Confidence 9988876 6778899999999999999999999988 8999999999999998765432 23345677
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+++|+.+.+++++....++|+.+.+|||+.
T Consensus 223 ~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~~ 254 (255)
T 3icc_A 223 EVEDIADTAAFLASPDSRWVTGQLIDVSGGSC 254 (255)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESSSTT
T ss_pred CHHHHHHHHHHHhCcccCCccCCEEEecCCee
Confidence 99999999999999888999999999999864
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=276.56 Aligned_cols=232 Identities=19% Similarity=0.224 Sum_probs=200.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc-cCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN-RFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~-~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++|++|||||++|||+++|++|+++|++ |++.+|+.++.++..+.+. ..+.++.++++|++|+++++++++++.+++
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYA--LALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERF 78 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999988 9999999887776544432 446789999999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
+++|+||||||+.. ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++ + .+|+++|..+..+
T Consensus 79 g~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~------~ii~~sS~~~~~~ 144 (235)
T 3l77_A 79 GDVDVVVANAGLGY-------FKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTG-G------LALVTTSDVSARL 144 (235)
T ss_dssp SSCSEEEECCCCCC-------CCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C------EEEEECCGGGSSC
T ss_pred CCCCEEEECCcccc-------ccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C------cEEEEecchhccc
Confidence 99999999999875 56677788999999999999999999999999995433 2 7888888877766
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhcC
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 265 (282)
.+....|+++|+++++|+++++.+ .. +|++++|+||+++|++..............+|+++|+.+.++++...
T Consensus 145 ---~~~~~~Y~~sKaa~~~~~~~l~~~--~~--~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~p~dva~~v~~l~~~~~ 217 (235)
T 3l77_A 145 ---IPYGGGYVSTKWAARALVRTFQIE--NP--DVRFFELRPGAVDTYFGGSKPGKPKEKGYLKPDEIAEAVRCLLKLPK 217 (235)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHH--CT--TSEEEEEEECSBSSSTTTCCSCCCGGGTCBCHHHHHHHHHHHHTSCT
T ss_pred ---CCCcchHHHHHHHHHHHHHHHhhc--CC--CeEEEEEeCCccccccccccCCcccccCCCCHHHHHHHHHHHHcCCC
Confidence 566789999999999999999544 44 89999999999999998776655455567899999999999999999
Q ss_pred CCCCCceeecCCcccC
Q 023441 266 SHDNGKFFAWDGQEIP 281 (282)
Q Consensus 266 ~~~~g~~~~~d~~~~~ 281 (282)
...+|+.+..++++-+
T Consensus 218 ~~~~~~~~~~~~~~~~ 233 (235)
T 3l77_A 218 DVRVEELMLRSVYQRP 233 (235)
T ss_dssp TCCCCEEEECCTTSCC
T ss_pred CCccceEEEeecccCC
Confidence 9999999998877643
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-40 Score=283.17 Aligned_cols=240 Identities=20% Similarity=0.264 Sum_probs=194.4
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec-CCCcccccccccccC-CCceeEEEeeCCCh----hHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-NPNGATGLLDLKNRF-PERLDVLQLDLTVE----STIEASA 98 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r-~~~~~~~~~~~~~~~-~~~v~~~~~Dls~~----~~~~~~~ 98 (282)
+++||++|||||++|||++++++|+++|++ |++++| +.+..+.+.+.+... +.++.++++|++|. +++++++
T Consensus 8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 85 (276)
T 1mxh_A 8 ASECPAAVITGGARRIGHSIAVRLHQQGFR--VVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDII 85 (276)
T ss_dssp ---CCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHH
Confidence 468999999999999999999999999987 999999 776665544444332 56899999999999 9999999
Q ss_pred HHHHHHcCCccEEEECcccCCCCCCCCCcccccccch-----------hhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCC
Q 023441 99 KSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEK-----------SSLMLAYEVNAVGPILVIKHMSPLLKVGGTGI 167 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~ 167 (282)
+++.+.++++|+||||||+.. ..+..+.+. ++|++.+++|+.+++++++.+.|.|. ++...
T Consensus 86 ~~~~~~~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~~~~ 157 (276)
T 1mxh_A 86 DCSFRAFGRCDVLVNNASAYY-------PTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQG-EGGAW 157 (276)
T ss_dssp HHHHHHHSCCCEEEECCCCCC-------CCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------
T ss_pred HHHHHhcCCCCEEEECCCCCC-------CCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCCC
Confidence 999999999999999999874 334445555 88999999999999999999999987 43311
Q ss_pred ccceeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-------ccc
Q 023441 168 ERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-------FQR 240 (282)
Q Consensus 168 ~~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~-------~~~ 240 (282)
....++||++||..+..+ .++...|++||++++.|+++++.|++++ +|+||+|+||++.|+ ... +..
T Consensus 158 ~~~~g~iv~isS~~~~~~---~~~~~~Y~asK~a~~~l~~~la~e~~~~--gi~v~~v~PG~v~t~-~~~~~~~~~~~~~ 231 (276)
T 1mxh_A 158 RSRNLSVVNLCDAMTDLP---LPGFCVYTMAKHALGGLTRAAALELAPR--HIRVNAVAPGLSLLP-PAMPQETQEEYRR 231 (276)
T ss_dssp -CCCEEEEEECCGGGGSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESSBSCC-SSSCHHHHHHHHT
T ss_pred CCCCcEEEEECchhhcCC---CCCCeehHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCcccCC-ccCCHHHHHHHHh
Confidence 111249999999988766 5677899999999999999999999988 899999999999998 210 111
Q ss_pred CCCCCC-CCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 241 NVPEGK-LFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 241 ~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
..+..+ ..+|+++|+.+++++++....++|+.+.+||++.
T Consensus 232 ~~p~~r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~ 272 (276)
T 1mxh_A 232 KVPLGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGLI 272 (276)
T ss_dssp TCTTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred cCCCCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCchh
Confidence 234455 7799999999999999878899999999999864
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=281.30 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=201.3
Q ss_pred ccccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.+++||++|||||+ +|||+++|++|+++|++ |++++|+. ..+.+.++... ..++.+++||++|.++++++++++
T Consensus 22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~--V~~~~r~~-~~~~~~~l~~~-~~~~~~~~~Dl~~~~~v~~~~~~~ 97 (280)
T 3nrc_A 22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAE--LAFTYVGQ-FKDRVEKLCAE-FNPAAVLPCDVISDQEIKDLFVEL 97 (280)
T ss_dssp CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCE--EEEEECTT-CHHHHHHHHGG-GCCSEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCE--EEEeeCch-HHHHHHHHHHh-cCCceEEEeecCCHHHHHHHHHHH
Confidence 46789999999988 78999999999999987 99999988 22222222222 246899999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccc-cchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNK-VEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
.++++++|+||||||...... ...+..+ .+.++|++.+++|+.+++++++.+.|.|.+++ | +||++||.
T Consensus 98 ~~~~g~id~li~nAg~~~~~~---~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g------~iv~isS~ 167 (280)
T 3nrc_A 98 GKVWDGLDAIVHSIAFAPRDQ---LEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRN-A------SMVALTYI 167 (280)
T ss_dssp HHHCSSCCEEEECCCCCCGGG---SSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTT-C------EEEEEECG
T ss_pred HHHcCCCCEEEECCccCCCcc---cCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C------eEEEEecc
Confidence 999999999999999874100 0134444 78899999999999999999999999998653 3 99999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------CCCCCCCCCh
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------NVPEGKLFTK 250 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------~~~~~~~~~~ 250 (282)
.+..+ .++...|++||++++.|+++++.|+++. +|+|++|+||+++|++.+.... ..+..+..+|
T Consensus 168 ~~~~~---~~~~~~Y~asKaal~~~~~~la~e~~~~--gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~p 242 (280)
T 3nrc_A 168 GAEKA---MPSYNTMGVAKASLEATVRYTALALGED--GIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSPLKKNVDI 242 (280)
T ss_dssp GGTSC---CTTTHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHSTTCSCCCH
T ss_pred ccccC---CCCchhhHHHHHHHHHHHHHHHHHHHHc--CcEEEEEeeccccchhhhcCcchHHHHHHHHhcCCCCCCCCH
Confidence 98876 6778899999999999999999999988 8999999999999998764321 2445677899
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++|+.+++++++....++|+.+.+|||+.
T Consensus 243 edvA~~v~~l~s~~~~~~tG~~i~vdgG~~ 272 (280)
T 3nrc_A 243 MEVGNTVAFLCSDMATGITGEVVHVDAGYH 272 (280)
T ss_dssp HHHHHHHHHTTSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHhCcccCCcCCcEEEECCCcc
Confidence 999999999999888899999999999975
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-40 Score=282.24 Aligned_cols=238 Identities=21% Similarity=0.286 Sum_probs=198.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEe-ecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT-CRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~-~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++|++|||||++|||+++|++|+++|++ |++. .|+.+..+.+.+.+.+.+.++.++.+|++|.++++++++++.+++
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G~~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 102 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQGWR--VGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQF 102 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999998 7665 777776666666666667799999999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
+++|+||||||... ...++.+.+.++|++.+++|+.+++++++.+.|.|.++..+ ..++||++||..+..+
T Consensus 103 g~id~li~nAg~~~------~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~---~~g~iv~isS~~~~~~ 173 (272)
T 4e3z_A 103 GRLDGLVNNAGIVD------YPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSG---QGGAIVNVSSMAAILG 173 (272)
T ss_dssp SCCCEEEECCCCCC------CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTC---CCEEEEEECCTHHHHC
T ss_pred CCCCEEEECCCCCC------CCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccC---CCCEEEEEcchHhccC
Confidence 99999999999874 23567778899999999999999999999999998763111 1149999999988765
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc---------cccCCCCCCCCChHHHHHH
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP---------FQRNVPEGKLFTKEFSVQK 256 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~---------~~~~~~~~~~~~~~~~a~~ 256 (282)
. .+....|++||++++.|+++++.|+++. +|++++|+||+++|++... .....+.....+|+++|+.
T Consensus 174 ~--~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~edvA~~ 249 (272)
T 4e3z_A 174 S--ATQYVDYAASKAAIDTFTIGLAREVAAE--GIRVNAVRPGIIETDLHASGGLPDRAREMAPSVPMQRAGMPEEVADA 249 (272)
T ss_dssp C--TTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBC------------------CCTTSSCBCHHHHHHH
T ss_pred C--CCCcchhHHHHHHHHHHHHHHHHHHHHc--CcEEEEEecCCCcCCcccccCChHHHHHHhhcCCcCCCcCHHHHHHH
Confidence 2 2356789999999999999999999988 8999999999999998643 1223445566789999999
Q ss_pred HHHHHhhcCCCCCCceeecCCcc
Q 023441 257 LLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 257 ~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+++++++....++|+.+.+|||.
T Consensus 250 i~~l~s~~~~~~tG~~i~vdgG~ 272 (272)
T 4e3z_A 250 ILYLLSPSASYVTGSILNVSGGR 272 (272)
T ss_dssp HHHHHSGGGTTCCSCEEEESTTC
T ss_pred HHHHhCCccccccCCEEeecCCC
Confidence 99999988889999999999984
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=279.25 Aligned_cols=226 Identities=21% Similarity=0.335 Sum_probs=194.7
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||++|||||++|||++++++|+++|++ |++++|+.++++.+.+.+...+.++.++++|++|+++++++++++.++
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 81 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAA--VAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEA 81 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999987 999999987776655555445668999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++ | +||++||..+..
T Consensus 82 ~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g------~iv~isS~~~~~ 147 (247)
T 2jah_A 82 LGGLDILVNNAGIML-------LGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-G------TVVQMSSIAGRV 147 (247)
T ss_dssp HSCCSEEEECCCCCC-------CCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C------EEEEECCGGGTC
T ss_pred cCCCCEEEECCCCCC-------CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-C------EEEEEccHHhcC
Confidence 999999999999874 45566778899999999999999999999999998665 4 999999998877
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------CCCCCCC--CChHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------NVPEGKL--FTKEFSV 254 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~~~~~~~--~~~~~~a 254 (282)
+ .++...|+++|++++.|+++++.|++++ +|++|+|+||+++|++...... ..+ ... .+|+++|
T Consensus 148 ~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~-~~~~~~~pedvA 221 (247)
T 2jah_A 148 N---VRNAAVYQATKFGVNAFSETLRQEVTER--GVRVVVIEPGTTDTELRGHITHTATKEMYEQRI-SQIRKLQAQDIA 221 (247)
T ss_dssp C---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECSBSSSGGGGCCCHHHHHHHHHHT-TTSCCBCHHHHH
T ss_pred C---CCCCcHHHHHHHHHHHHHHHHHHHhccc--CcEEEEEECCCCCCcchhcccchhhHHHHHhcc-cccCCCCHHHHH
Confidence 6 5677899999999999999999999988 8999999999999998653211 111 223 7999999
Q ss_pred HHHHHHHhhcCCCCCCce
Q 023441 255 QKLLNIINNIKSHDNGKF 272 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~ 272 (282)
+.+++++++.....++..
T Consensus 222 ~~v~~l~s~~~~~~~~~i 239 (247)
T 2jah_A 222 EAVRYAVTAPHHATVHEI 239 (247)
T ss_dssp HHHHHHHHSCTTEEEEEE
T ss_pred HHHHHHhCCCccCccceE
Confidence 999999998766665554
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=284.98 Aligned_cols=235 Identities=20% Similarity=0.262 Sum_probs=193.1
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccc---ccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK---NRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~---~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
+++||++|||||++|||++++++|+++|++ |++++|+.++.+...+.+ ...+.++.++++|++|+++++++++++
T Consensus 3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (278)
T 1spx_A 3 RFAEKVAIITGSSNGIGRATAVLFAREGAK--VTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT 80 (278)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHH
Confidence 478999999999999999999999999987 999999987766544433 333457899999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCccccccc----chhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKV----EKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~----~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
.+++|++|+||||||... ..+..+. +.++|++.+++|+.+++++++.+.|.|++++ | +||++
T Consensus 81 ~~~~g~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g------~iv~i 146 (278)
T 1spx_A 81 LGKFGKLDILVNNAGAAI-------PDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-G------EIVNI 146 (278)
T ss_dssp HHHHSCCCEEEECCC--------------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C------EEEEE
T ss_pred HHHcCCCCEEEECCCCCC-------CcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-C------eEEEE
Confidence 999999999999999864 3344455 7889999999999999999999999997654 4 99999
Q ss_pred ecccc-ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-----------------
Q 023441 178 SARVG-SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------------- 239 (282)
Q Consensus 178 ss~~~-~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------------- 239 (282)
||..+ ..+ .++...|+++|++++.|+++++.|++++ +|++|+|+||+++|++.....
T Consensus 147 sS~~~~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 221 (278)
T 1spx_A 147 SSIASGLHA---TPDFPYYSIAKAAIDQYTRNTAIDLIQH--GIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMK 221 (278)
T ss_dssp CCTTSSSSC---CTTSHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCBCCCC--------------HHHHHHHH
T ss_pred ecccccccC---CCCccHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEecCcccCccccccccCchhhhhhhHHHHHHH
Confidence 99987 655 5677899999999999999999999988 899999999999999864321
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhhcCCC-CCCceeecCCccc
Q 023441 240 RNVPEGKLFTKEFSVQKLLNIINNIKSH-DNGKFFAWDGQEI 280 (282)
Q Consensus 240 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~g~~~~~d~~~~ 280 (282)
...+..+..+|+++|+.+++++++.... ++|+.+.+||++.
T Consensus 222 ~~~p~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~~ 263 (278)
T 1spx_A 222 ECVPAGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSS 263 (278)
T ss_dssp HHCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred hcCCCcCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCcc
Confidence 0123456779999999999999876665 9999999999864
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=279.99 Aligned_cols=236 Identities=21% Similarity=0.252 Sum_probs=198.6
Q ss_pred cccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 25 KWKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 25 ~~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
+++||++|||||+ +|||+++|++|+++|++ |++++|+.+ .+. ..++....+ .+.++++|++|+++++++++++
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~--V~~~~r~~~-~~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~~ 78 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGAT--LAFTYLNES-LEKRVRPIAQELN-SPYVYELDVSKEEHFKSLYNSV 78 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCE--EEEEESSTT-THHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCE--EEEEeCCHH-HHHHHHHHHHhcC-CcEEEEcCCCCHHHHHHHHHHH
Confidence 3789999999999 99999999999999987 999999986 332 223222223 4789999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++++++|+||||||...... ...++.+.+.++|++.+++|+.+++++++.+.|.|++. ++||++||..
T Consensus 79 ~~~~g~id~lv~nAg~~~~~~---~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--------g~iv~isS~~ 147 (275)
T 2pd4_A 79 KKDLGSLDFIVHSVAFAPKEA---LEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNG--------ASVLTLSYLG 147 (275)
T ss_dssp HHHTSCEEEEEECCCCCCGGG---GSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE--------EEEEEEECGG
T ss_pred HHHcCCCCEEEECCccCcccc---CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccC--------CEEEEEecch
Confidence 999999999999999864100 01456678889999999999999999999999998641 3999999988
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKE 251 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~ 251 (282)
+..+ .+....|++||++++.|+++++.|++++ +|+||+|+||+++|++..... ...+..+..+|+
T Consensus 148 ~~~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ 222 (275)
T 2pd4_A 148 STKY---MAHYNVMGLAKAALESAVRYLAVDLGKH--HIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLE 222 (275)
T ss_dssp GTSB---CTTCHHHHHHHHHHHHHHHHHHHHHHTT--TCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHH
T ss_pred hcCC---CCCchhhHHHHHHHHHHHHHHHHHhhhc--CeEEEEEeeCccccchhhhccccHHHHHHHHhcCCcCCCCCHH
Confidence 8766 5677899999999999999999999988 899999999999999865422 123445677999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++|+.+++++++....++|+.+.+||++.
T Consensus 223 dva~~~~~l~s~~~~~~tG~~~~vdgg~~ 251 (275)
T 2pd4_A 223 EVGNAGMYLLSSLSSGVSGEVHFVDAGYH 251 (275)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 99999999999878899999999999863
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=279.86 Aligned_cols=239 Identities=16% Similarity=0.228 Sum_probs=197.3
Q ss_pred ccc-ccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccCCCceeEEEeeCCChhHHHHHH
Q 023441 23 SVK-WKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRFPERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 23 ~~~-~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~~ 98 (282)
.|+ ++||++|||||+ +|||+++|++|+++|++ |++++|+.+ .+. ..++....+ .+.++++|++|++++++++
T Consensus 15 ~m~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~--V~~~~r~~~-~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~ 90 (285)
T 2p91_A 15 FMGLLEGKRALITGVANERSIAYGIAKSFHREGAQ--LAFTYATPK-LEKRVREIAKGFG-SDLVVKCDVSLDEDIKNLK 90 (285)
T ss_dssp --CTTTTCEEEECCCSSTTSHHHHHHHHHHHTTCE--EEEEESSGG-GHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHH
T ss_pred hhhccCCCEEEEECCCCCCcHHHHHHHHHHHcCCE--EEEEeCCHH-HHHHHHHHHHhcC-CeEEEEcCCCCHHHHHHHH
Confidence 354 899999999999 99999999999999987 999999875 222 222222223 4789999999999999999
Q ss_pred HHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 99 KSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
+++.++++++|+||||||...... ...++.+.+.++|++.+++|+.+++++++.+.|.|.+++ | +||++|
T Consensus 91 ~~~~~~~g~iD~lv~~Ag~~~~~~---~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g------~iv~is 160 (285)
T 2p91_A 91 KFLEENWGSLDIIVHSIAYAPKEE---FKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRN-G------AIVTLS 160 (285)
T ss_dssp HHHHHHTSCCCEEEECCCCCCGGG---GSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSC-C------EEEEEE
T ss_pred HHHHHHcCCCCEEEECCCCCCccc---CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-C------EEEEEc
Confidence 999999999999999999864100 014566778899999999999999999999999997542 3 999999
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCC
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLF 248 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~ 248 (282)
|..+..+ .+....|++||++++.|+++++.|+++. +|+||+|+||+++|++..... ...+..+..
T Consensus 161 S~~~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~ 235 (285)
T 2p91_A 161 YYGAEKV---VPHYNVMGIAKAALESTVRYLAYDIAKH--GHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPFGKPI 235 (285)
T ss_dssp CGGGTSB---CTTTTHHHHHHHHHHHHHHHHHHHHHTT--TCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHSTTSSCC
T ss_pred cchhccC---CCCccHHHHHHHHHHHHHHHHHHHhccc--CcEEEEEEeCcccCchhhcccchHHHHHHHHhcCCCCCCc
Confidence 9888766 5667889999999999999999999988 899999999999999865321 123445677
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+++|+.+++++++....++|+.+.+||++.
T Consensus 236 ~~~dva~~~~~l~s~~~~~~tG~~~~vdgg~~ 267 (285)
T 2p91_A 236 TIEDVGDTAVFLCSDWARAITGEVVHVDNGYH 267 (285)
T ss_dssp CHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred CHHHHHHHHHHHcCCcccCCCCCEEEECCCcc
Confidence 99999999999998878899999999999863
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=278.11 Aligned_cols=239 Identities=22% Similarity=0.273 Sum_probs=198.7
Q ss_pred cccccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 23 ~~~~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
.++++||++|||||+ +|||++++++|+++|++ |++++|+.+..+...++....+ .+.++++|++|++++++++++
T Consensus 3 ~~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~ 79 (261)
T 2wyu_A 3 TVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAE--VALSYQAERLRPEAEKLAEALG-GALLFRADVTQDEELDALFAG 79 (261)
T ss_dssp EECCTTCEEEEESCCSSSSHHHHHHHHHHHHTCE--EEEEESCGGGHHHHHHHHHHTT-CCEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCE--EEEEcCCHHHHHHHHHHHHhcC-CcEEEECCCCCHHHHHHHHHH
Confidence 356889999999999 99999999999999987 9999998752112222222223 478999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.++++++|+||||||...... ...++.+.+.++|++.+++|+.+++++++.+.|.|.+. ++||++||.
T Consensus 80 ~~~~~g~iD~lv~~Ag~~~~~~---~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--------g~iv~isS~ 148 (261)
T 2wyu_A 80 VKEAFGGLDYLVHAIAFAPREA---MEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREG--------GGIVTLTYY 148 (261)
T ss_dssp HHHHHSSEEEEEECCCCCCHHH---HSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE--------EEEEEEECG
T ss_pred HHHHcCCCCEEEECCCCCCccc---CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccC--------CEEEEEecc
Confidence 9999999999999999863000 01456677889999999999999999999999998641 399999998
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCCh
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTK 250 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~ 250 (282)
.+..+ .+....|++||++++.|+++++.|++++ +|++|+|+||+++|++..... ...+..+..+|
T Consensus 149 ~~~~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 223 (261)
T 2wyu_A 149 ASEKV---VPKYNVMAIAKAALEASVRYLAYELGPK--GVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQ 223 (261)
T ss_dssp GGTSB---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHSTTSSCCCH
T ss_pred cccCC---CCCchHHHHHHHHHHHHHHHHHHHHhhh--CcEEEEEeeCCCcCchhhhccccHHHHHHHHhcCCCCCCCCH
Confidence 88766 5667889999999999999999999988 899999999999999854321 12345567799
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++|+.+++++++....++|+.+.+||++.
T Consensus 224 ~dva~~v~~l~s~~~~~~tG~~~~vdgG~~ 253 (261)
T 2wyu_A 224 EEVGNLGLFLLSPLASGITGEVVYVDAGYH 253 (261)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHcChhhcCCCCCEEEECCCcc
Confidence 999999999998878899999999999863
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=276.53 Aligned_cols=225 Identities=25% Similarity=0.327 Sum_probs=198.1
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||++|||||++|||++++++|+++|++ |++++|+.+. +.++.++++|++|.++++++++++.+
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~-----------~~~~~~~~~Dl~~~~~v~~~~~~~~~ 70 (264)
T 2dtx_A 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSK--VIDLSIHDPG-----------EAKYDHIECDVTNPDQVKASIDHIFK 70 (264)
T ss_dssp GGGTTCEEEEESCSSHHHHHHHHHHHHTTCE--EEEEESSCCC-----------SCSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEecCccc-----------CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999999987 9999998754 34788999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||..+.
T Consensus 71 ~~g~iD~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g------~iv~isS~~~~ 137 (264)
T 2dtx_A 71 EYGSISVLVNNAGIES-------YGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDP------SIVNISSVQAS 137 (264)
T ss_dssp HHSCCCEEEECCCCCC-------CBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSC------EEEEECCGGGT
T ss_pred HcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc------EEEEECCchhc
Confidence 9999999999999874 4556677889999999999999999999999999877654 99999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-------------------cCCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-------------------RNVPE 244 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-------------------~~~~~ 244 (282)
.+ .++...|++||++++.|+++++.|+++. |++|+|+||+++|++..... ...+.
T Consensus 138 ~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~---i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 211 (264)
T 2dtx_A 138 II---TKNASAYVTSKHAVIGLTKSIALDYAPL---LRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPM 211 (264)
T ss_dssp SC---CTTBHHHHHHHHHHHHHHHHHHHHHTTT---SEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHHHHHSTT
T ss_pred cC---CCCchhHHHHHHHHHHHHHHHHHHhcCC---cEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHHHhcCCC
Confidence 66 5677899999999999999999999764 99999999999999754321 12345
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 245 GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+..+|+++|+.+++++++....++|+.+.+||++.
T Consensus 212 ~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 247 (264)
T 2dtx_A 212 QRIGKPQEVASAVAFLASREASFITGTCLYVDGGLS 247 (264)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCCcc
Confidence 567899999999999999888899999999999864
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-40 Score=281.01 Aligned_cols=233 Identities=21% Similarity=0.302 Sum_probs=199.7
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..+++||++|||||++|||++++++|+++|++ |++++|+.+..+.+.+.+. ++.++++|++|+++++++++++.
T Consensus 4 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~ 77 (270)
T 1yde_A 4 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGAR--VVICDKDESGGRALEQELP----GAVFILCDVTQEDDVKTLVSETI 77 (270)
T ss_dssp CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHCT----TEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHhc----CCeEEEcCCCCHHHHHHHHHHHH
Confidence 34678999999999999999999999999987 9999998876654443332 47899999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|+||||||... +..+..+.+.++|++.+++|+.+++++++.+.|.|.+++ | +||++||..+
T Consensus 78 ~~~g~iD~lv~nAg~~~------~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g------~iv~isS~~~ 144 (270)
T 1yde_A 78 RRFGRLDCVVNNAGHHP------PPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ-G------NVINISSLVG 144 (270)
T ss_dssp HHHSCCCEEEECCCCCC------CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C------EEEEECCHHH
T ss_pred HHcCCCCEEEECCCCCC------CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-C------EEEEEcCccc
Confidence 99999999999999864 234566778899999999999999999999999987542 3 9999999887
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------------cCCCCCCCC
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------------RNVPEGKLF 248 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------------~~~~~~~~~ 248 (282)
..+ .+....|+++|++++.|+++++.|++++ +|++|+|+||+++|++.+... ...+..+..
T Consensus 145 ~~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~ 219 (270)
T 1yde_A 145 AIG---QAQAVPYVATKGAVTAMTKALALDESPY--GVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMG 219 (270)
T ss_dssp HHC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTSSCB
T ss_pred cCC---CCCCcccHHHHHHHHHHHHHHHHHhhhh--CcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhcCCCCCCc
Confidence 766 5667899999999999999999999988 899999999999998743211 123455677
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+|+|+.+.+++++ ...++|+.+.+||++.
T Consensus 220 ~p~dva~~v~~L~s~-~~~itG~~i~vdGG~~ 250 (270)
T 1yde_A 220 QPAEVGAAAVFLASE-ANFCTGIELLVTGGAE 250 (270)
T ss_dssp CHHHHHHHHHHHHHH-CTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHccc-CCCcCCCEEEECCCee
Confidence 999999999999997 6899999999999864
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=279.31 Aligned_cols=245 Identities=17% Similarity=0.230 Sum_probs=201.9
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
...++++||++|||||++|||+++|++|+++|++ |++++|+.++.+++.+.+ +.++.++++|++|.+++++++++
T Consensus 23 ~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~--Vi~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~ 97 (281)
T 3ppi_A 23 VTIKQFEGASAIVSGGAGGLGEATVRRLHADGLG--VVIADLAAEKGKALADEL---GNRAEFVSTNVTSEDSVLAAIEA 97 (281)
T ss_dssp -CCGGGTTEEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHH
T ss_pred hhhhccCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCChHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHH
Confidence 3567899999999999999999999999999987 999999988776655444 56899999999999999999999
Q ss_pred HHHHcCCccEEEEC-cccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 101 IKEKYGSLNLLINA-SGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 101 ~~~~~~~id~lv~~-ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
+ ++++++|++||| +|........ .....+.+.++|++.+++|+.+++++++.+.+.+.+.........++||++||
T Consensus 98 ~-~~~~~id~lv~~aag~~~~~~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS 174 (281)
T 3ppi_A 98 A-NQLGRLRYAVVAHGGFGVAQRIV--QRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTAS 174 (281)
T ss_dssp H-TTSSEEEEEEECCCCCCCCCCSB--CTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECC
T ss_pred H-HHhCCCCeEEEccCccccccccc--ccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEec
Confidence 9 888999999999 5554311110 11123567788999999999999999999999997632211122359999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCC-CCCCCh
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPE-GKLFTK 250 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~-~~~~~~ 250 (282)
..+..+ .++...|++||++++.|+++++.|+++. +|+|++|+||+++|++.+... ...+. ....+|
T Consensus 175 ~~~~~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p 249 (281)
T 3ppi_A 175 IAGYEG---QIGQTAYAAAKAGVIGLTIAAARDLSSA--GIRVNTIAPGTMKTPIMESVGEEALAKFAANIPFPKRLGTP 249 (281)
T ss_dssp GGGTSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCHHHHTTCHHHHHHHHHTCCSSSSCBCH
T ss_pred ccccCC---CCCCcccHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCcCCchhhhcccHHHHHHHHhcCCCCCCCCCH
Confidence 998877 6778899999999999999999999988 899999999999999765422 23333 667799
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++|+.+++++++ ..++|+.+.+||++.
T Consensus 250 edvA~~v~~l~s~--~~~tG~~i~vdGG~~ 277 (281)
T 3ppi_A 250 DEFADAAAFLLTN--GYINGEVMRLDGAQR 277 (281)
T ss_dssp HHHHHHHHHHHHC--SSCCSCEEEESTTCC
T ss_pred HHHHHHHHHHHcC--CCcCCcEEEECCCcc
Confidence 9999999999985 689999999999863
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=274.97 Aligned_cols=221 Identities=26% Similarity=0.333 Sum_probs=191.9
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHh-cCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLE-KNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~-~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.++|++|||||++|||+++|++|++ .|+. |++.+|+.+.. ..++.++++|++|+++++++++.+.
T Consensus 2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~--v~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~~~~~~-- 67 (244)
T 4e4y_A 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHT--VINIDIQQSFS----------AENLKFIKADLTKQQDITNVLDIIK-- 67 (244)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTSTTEE--EEEEESSCCCC----------CTTEEEEECCTTCHHHHHHHHHHTT--
T ss_pred CCCCeEEEeCCCChHHHHHHHHHHhcCCcE--EEEeccccccc----------cccceEEecCcCCHHHHHHHHHHHH--
Confidence 4689999999999999999999999 6765 88888876521 1356899999999999999996554
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|.++ ++||++||..+..
T Consensus 68 ~~~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--------g~iv~~sS~~~~~ 132 (244)
T 4e4y_A 68 NVSFDGIFLNAGILI-------KGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVG--------ASIVFNGSDQCFI 132 (244)
T ss_dssp TCCEEEEEECCCCCC-------CBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEE--------EEEEEECCGGGTC
T ss_pred hCCCCEEEECCccCC-------CCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccC--------cEEEEECCHHHcc
Confidence 689999999999975 5667788899999999999999999999999999764 3899999999887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------------ccCCCCC
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------------QRNVPEG 245 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------------~~~~~~~ 245 (282)
+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+.. ....+..
T Consensus 133 ~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 207 (244)
T 4e4y_A 133 A---KPNSFAYTLSKGAIAQMTKSLALDLAKY--QIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLN 207 (244)
T ss_dssp C---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTSTTS
T ss_pred C---CCCCchhHHHHHHHHHHHHHHHHHHHHc--CeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhcCCCC
Confidence 6 6777899999999999999999999998 89999999999999975432 2334566
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+..+|+++|+.+++++++....++|+.+.+|||+.
T Consensus 208 r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~~ 242 (244)
T 4e4y_A 208 RIAQPQEIAELVIFLLSDKSKFMTGGLIPIDGGYT 242 (244)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHhcCccccccCCeEeECCCcc
Confidence 77899999999999999888999999999999974
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=276.88 Aligned_cols=235 Identities=15% Similarity=0.189 Sum_probs=196.2
Q ss_pred ccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 26 WKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 26 ~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
++||++|||||+ +|||+++|++|+++|++ |++++|+. +.+. ..++....+ ...++++|++|+++++++++++.
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~--V~~~~r~~-~~~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAE--LAFTYQND-KLKGRVEEFAAQLG-SDIVLQCDVAEDASIDTMFAELG 82 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCE--EEEEESST-TTHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCE--EEEEcCcH-HHHHHHHHHHHhcC-CcEEEEccCCCHHHHHHHHHHHH
Confidence 789999999999 99999999999999987 99999987 3333 222222222 34889999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccc-cchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNK-VEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
++++++|+||||||...... ...++.+ .+.++|++.+++|+.+++++++++.|.|.+. ++||++||..
T Consensus 83 ~~~g~iD~lv~~Ag~~~~~~---~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--------g~iv~isS~~ 151 (265)
T 1qsg_A 83 KVWPKFDGFVHSIGFAPGDQ---LDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPG--------SALLTLSYLG 151 (265)
T ss_dssp TTCSSEEEEEECCCCCCGGG---GSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE--------EEEEEEECGG
T ss_pred HHcCCCCEEEECCCCCCccc---cCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccC--------CEEEEEcchh
Confidence 99999999999999864000 0134556 7889999999999999999999999998641 3999999988
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKE 251 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~ 251 (282)
+..+ .++...|+++|++++.|+++++.|++++ +|+||+|+||+++|++..... ...+..+..+|+
T Consensus 152 ~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 226 (265)
T 1qsg_A 152 AERA---IPNYNVMGLAKASLEANVRYMANAMGPE--GVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIE 226 (265)
T ss_dssp GTSB---CTTTTHHHHHHHHHHHHHHHHHHHHTTT--TEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHH
T ss_pred hccC---CCCchHHHHHHHHHHHHHHHHHHHhhhc--CeEEEEEEeCCCccchhhcccccHHHHHHHHhcCCCCCCCCHH
Confidence 8766 5667899999999999999999999988 899999999999999865321 113455677999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++|+.+++++++....++|+.+.+||++.
T Consensus 227 dva~~v~~l~s~~~~~~tG~~~~vdgG~~ 255 (265)
T 1qsg_A 227 DVGNSAAFLCSDLSAGISGEVVHVDGGFS 255 (265)
T ss_dssp HHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHhCchhcCccCCEEEECCCcC
Confidence 99999999998878899999999999863
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-39 Score=274.06 Aligned_cols=247 Identities=31% Similarity=0.495 Sum_probs=201.9
Q ss_pred hccccccccccCcEEEEecCCCchhHHHHHHHHhcC---CCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhH
Q 023441 17 TSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKN---DKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVEST 93 (282)
Q Consensus 17 ~~~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G---~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~ 93 (282)
..+.....++++|++|||||++|||++++++|+++| ++ |++++|+.+..+.+.++... +.++.++.+|++|.++
T Consensus 10 ~~~~~~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~--V~~~~r~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~ 86 (267)
T 1sny_A 10 HSSGLVPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQH--LFTTCRNREQAKELEDLAKN-HSNIHILEIDLRNFDA 86 (267)
T ss_dssp ----------CCSEEEESCCSSHHHHHHHHHHHTSSSCCSE--EEEEESCTTSCHHHHHHHHH-CTTEEEEECCTTCGGG
T ss_pred hcccccccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcE--EEEEecChhhhHHHHHhhcc-CCceEEEEecCCChHH
Confidence 344566788999999999999999999999999999 66 99999998876644333222 4589999999999999
Q ss_pred HHHHHHHHHHHcC--CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcC------CC
Q 023441 94 IEASAKSIKEKYG--SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVG------GT 165 (282)
Q Consensus 94 ~~~~~~~~~~~~~--~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~------~~ 165 (282)
++++++++.+.++ ++|+||||||... +..+..+.+.+++++.+++|+.+++.+++.+.|.|.++ +.
T Consensus 87 v~~~~~~~~~~~g~~~id~li~~Ag~~~------~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~ 160 (267)
T 1sny_A 87 YDKLVADIEGVTKDQGLNVLFNNAGIAP------KSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQP 160 (267)
T ss_dssp HHHHHHHHHHHHGGGCCSEEEECCCCCC------CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHhcCCCCccEEEECCCcCC------CccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhccccccccc
Confidence 9999999999998 8999999999863 13456677889999999999999999999999998765 20
Q ss_pred CCccceeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCC
Q 023441 166 GIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEG 245 (282)
Q Consensus 166 g~~~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~ 245 (282)
.....++||++||..+..+..+.++...|+++|++++.|++.++.|+++. +|++++|+||+++|++... .
T Consensus 161 -~~~~~~~iv~isS~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~-------~ 230 (267)
T 1sny_A 161 -MGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQ--RIMCVSLHPGWVKTDMGGS-------S 230 (267)
T ss_dssp -SSTTTCEEEEECCGGGCSTTCCSCCCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEECCCSBCSTTTCT-------T
T ss_pred -ccCCCceEEEEecccccccCCCCCCchHHHHHHHHHHHHHHHHHHHhhcC--CcEEEEeCCcceecCCCCC-------C
Confidence 00001399999999887664333466789999999999999999999988 8999999999999998643 2
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
...+|+++|+.+++++.......+|.++.+||+.++|
T Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~~~w 267 (267)
T 1sny_A 231 APLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPLAW 267 (267)
T ss_dssp CSBCHHHHHHHHHHHHHHCCGGGTTCEECTTSCBCCC
T ss_pred CCCCHHHHHHHHHHHHHhcCcCCCCcEEccCCcCcCC
Confidence 3469999999999999988888999999999999999
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=274.56 Aligned_cols=238 Identities=21% Similarity=0.280 Sum_probs=204.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec-CCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-NPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r-~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+++||++|||||++|||++++++|+++|++ |++.+| +.+..+.+.+.+...+.++.++.+|++|+++++++++++.
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (261)
T 1gee_A 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAK--VVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAI 80 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999987 999999 6655555544444456689999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeeccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARV 181 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~~ 181 (282)
++++++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|.+++ .+ +||++||..
T Consensus 81 ~~~g~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~------~iv~isS~~ 147 (261)
T 1gee_A 81 KEFGKLDVMINNAGLEN-------PVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKG------TVINMSSVH 147 (261)
T ss_dssp HHHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCC------EEEEECCGG
T ss_pred HHcCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCC------EEEEeCCHH
Confidence 99999999999999874 44566778899999999999999999999999998765 43 999999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCChH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTKE 251 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~~~ 251 (282)
+..+ .+....|+++|++++.+++.++.|+++. +|++++++||++.|++.... ....+.....+|+
T Consensus 148 ~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (261)
T 1gee_A 148 EKIP---WPLFVHYAASKGGMKLMTETLALEYAPK--GIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPE 222 (261)
T ss_dssp GTSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTSSCBCHH
T ss_pred hcCC---CCCccHHHHHHHHHHHHHHHHHHHhccc--CeEEEEEeeCCcCCchhhhcccChhHHHHHHhcCCCCCCcCHH
Confidence 7765 5677899999999999999999999988 89999999999999986432 1123445677999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
++|+.+++++++....++|+.+.+||++..
T Consensus 223 dva~~~~~l~~~~~~~~~G~~~~v~gg~~~ 252 (261)
T 1gee_A 223 EIAAVAAWLASSEASYVTGITLFADGGMTL 252 (261)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred HHHHHHHHHhCccccCCCCcEEEEcCCccc
Confidence 999999999987778899999999998753
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-39 Score=272.39 Aligned_cols=236 Identities=23% Similarity=0.387 Sum_probs=202.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccc-ccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK-NRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~-~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
+||++|||||++|||++++++|+++|++ |++++|+.+..+...+.+ ...+.++.++++|++|+++++++++++.+++
T Consensus 1 ~~k~vlItGasggiG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (250)
T 2cfc_A 1 MSRVAIVTGASSGNGLAIATRFLARGDR--VAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQF 78 (250)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 4799999999999999999999999987 999999987666544433 3445689999999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCccc---ccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 106 GSLNLLINASGILSIPNVLQPETT---LNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~---~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+++|+||||||... ..+ +.+.+.++|++.+++|+.+++.+++.+.|.|.+++.+ +||++||..+
T Consensus 79 ~~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~------~iv~isS~~~ 145 (250)
T 2cfc_A 79 GAIDVLVNNAGITG-------NSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAG------VIVNIASVAS 145 (250)
T ss_dssp SCCCEEEECCCCCC-------CTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGG
T ss_pred CCCCEEEECCCCCC-------CCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC------EEEEECChhh
Confidence 99999999999864 223 6677889999999999999999999999999876543 9999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-cc---------cCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-FQ---------RNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~-~~---------~~~~~~~~~~~~~ 252 (282)
..+ .++...|+++|++++.++++++.|+++. +|++++++||++.|++... .. ...+.....+|++
T Consensus 146 ~~~---~~~~~~Y~~sK~a~~~~~~~l~~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 220 (250)
T 2cfc_A 146 LVA---FPGRSAYTTSKGAVLQLTKSVAVDYAGS--GIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAAQ 220 (250)
T ss_dssp TSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTCTTCSCBCHHH
T ss_pred ccC---CCCchhHHHHHHHHHHHHHHHHHHhccc--CeEEEEEEeCcCccCccccccCCHHHHHHHHhcCCCCCCcCHHH
Confidence 766 5667899999999999999999999988 8999999999999998653 11 1234456779999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
+|+.+.+++++....++|+.+.+||++..|
T Consensus 221 va~~~~~l~~~~~~~~~G~~~~v~gG~~~~ 250 (250)
T 2cfc_A 221 VADAVMFLAGEDATYVNGAALVMDGAYTAI 250 (250)
T ss_dssp HHHHHHHHHSTTCTTCCSCEEEESTTGGGC
T ss_pred HHHHHHHHcCchhhcccCCEEEECCceecC
Confidence 999999999887788999999999998654
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=274.44 Aligned_cols=227 Identities=25% Similarity=0.307 Sum_probs=193.6
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||++|||||++|||++++++|+++|++ |++.+|+.++.+... .. .++.++++|++|+++++ ++.++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~-~~----~~~~~~~~D~~~~~~~~----~~~~~ 71 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAK--VIATDINESKLQELE-KY----PGIQTRVLDVTKKKQID----QFANE 71 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHGGGG-GS----TTEEEEECCTTCHHHHH----HHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHH-hc----cCceEEEeeCCCHHHHH----HHHHH
Confidence 578999999999999999999999999987 999999876655443 22 27889999999999887 44556
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..+..
T Consensus 72 ~~~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g------~iv~isS~~~~~ 138 (246)
T 2ag5_A 72 VERLDVLFNVAGFVH-------HGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSG------NIINMSSVASSV 138 (246)
T ss_dssp CSCCSEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCSBTTT
T ss_pred hCCCCEEEECCccCC-------CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------eEEEEechHhCc
Confidence 789999999999874 4566778889999999999999999999999999876543 999999998876
Q ss_pred CCCCCC-CcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--------------cccCCCCCCCCC
Q 023441 185 GDNRLG-GWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--------------FQRNVPEGKLFT 249 (282)
Q Consensus 185 ~~~~~~-~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--------------~~~~~~~~~~~~ 249 (282)
+ .+ +...|+++|++++.|+++++.|++++ +|++|+|+||+++|++.+. +....+..+..+
T Consensus 139 ~---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (246)
T 2ag5_A 139 K---GVVNRCVYSTTKAAVIGLTKSVAADFIQQ--GIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFAT 213 (246)
T ss_dssp B---CCTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTSSCEE
T ss_pred C---CCCCCccHHHHHHHHHHHHHHHHHHhhhc--CcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCCCCCCCC
Confidence 5 34 67899999999999999999999988 8999999999999987443 111234556779
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+++|+.+++++++....++|+.+.+||++.
T Consensus 214 ~~dvA~~v~~l~s~~~~~~tG~~i~vdgG~~ 244 (246)
T 2ag5_A 214 AEEIAMLCVYLASDESAYVTGNPVIIDGGWS 244 (246)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEECTTGG
T ss_pred HHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 9999999999999888899999999999964
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-40 Score=287.70 Aligned_cols=234 Identities=18% Similarity=0.223 Sum_probs=196.3
Q ss_pred cCcEEEEecCCC--chhHHHHHHHHhcCCCcEEEEee---------cCCCcccccccccccC---CCceeEEEeeCCCh-
Q 023441 27 KGGVSLVQGASR--GIGLEFAKQLLEKNDKGCVIATC---------RNPNGATGLLDLKNRF---PERLDVLQLDLTVE- 91 (282)
Q Consensus 27 ~gk~vlItGas~--giG~a~a~~la~~G~~~~vi~~~---------r~~~~~~~~~~~~~~~---~~~v~~~~~Dls~~- 91 (282)
++|++|||||++ |||+++|++|+++|++ |++.+ |+.++.+......... ...+.++++|+++.
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~--Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 78 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVK--IIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDT 78 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCE--EEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSS
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCCE--EEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccc
Confidence 479999999975 9999999999999988 88555 4444444333322221 23578899999988
Q ss_pred -h------------------HHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHH
Q 023441 92 -S------------------TIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILV 152 (282)
Q Consensus 92 -~------------------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 152 (282)
+ +++++++++.++++++|+||||||+... ...++.+.+.++|++.+++|+.+++.+
T Consensus 79 ~~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~-----~~~~~~~~~~~~~~~~~~vN~~g~~~l 153 (329)
T 3lt0_A 79 ANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKE-----VQKDLLNTSRKGYLDALSKSSYSLISL 153 (329)
T ss_dssp GGGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTT-----TTSCGGGCCHHHHHHHHHHHTHHHHHH
T ss_pred hhhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCccccc-----CCCCcccCCHHHHHHHHHHHhHHHHHH
Confidence 8 9999999999999999999999997520 245677888999999999999999999
Q ss_pred HHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCCCcc-cchhhHHHHHHHHHHHHHHhcc-CCCCeEEEEEecccc
Q 023441 153 IKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWH-SYRASKAALNQLTKSVSVEFGR-KKDPVICILLHPGTV 230 (282)
Q Consensus 153 ~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~~-~Y~~sKa~~~~l~~~la~e~~~-~~~~i~v~~i~Pg~v 230 (282)
++.+.|.|+++ ++||++||..+..+ .+... .|++||+++.+|+++|+.|+++ + +|+||+|+||++
T Consensus 154 ~~~~~p~m~~~--------g~Iv~isS~~~~~~---~~~~~~~Y~asKaal~~~~~~la~el~~~~--gI~vn~v~PG~v 220 (329)
T 3lt0_A 154 CKYFVNIMKPQ--------SSIISLTYHASQKV---VPGYGGGMSSAKAALESDTRVLAYHLGRNY--NIRINTISAGPL 220 (329)
T ss_dssp HHHHGGGEEEE--------EEEEEEECGGGTSC---CTTCTTTHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEEEECCC
T ss_pred HHHHHHHHhhC--------CeEEEEeCccccCC---CCcchHHHHHHHHHHHHHHHHHHHHhCCcc--CeEEEEEeccee
Confidence 99999999875 39999999998876 56664 8999999999999999999998 7 899999999999
Q ss_pred cCCCCcccc-----------------------------------------------------cCCCCCCCCChHHHHHHH
Q 023441 231 DTDLSRPFQ-----------------------------------------------------RNVPEGKLFTKEFSVQKL 257 (282)
Q Consensus 231 ~t~~~~~~~-----------------------------------------------------~~~~~~~~~~~~~~a~~~ 257 (282)
+|++.+.+. ...+..+..+|+++|+.+
T Consensus 221 ~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v 300 (329)
T 3lt0_A 221 KSRAATAINKLNNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPLRQKLLSTDIGSVA 300 (329)
T ss_dssp CCHHHHTCC------------------------------------------CHHHHHHHHHHHHSSSCSCCCHHHHHHHH
T ss_pred echhHhhhhhhcccccccccccccccccccchhhcccccchhhhhhhhcccchhHHHHHHHhhcCcccCcCCHHHHHHHH
Confidence 999865432 123556778999999999
Q ss_pred HHHHhhcCCCCCCceeecCCccc
Q 023441 258 LNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 258 ~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++++++...++||+.+.+|||+.
T Consensus 301 ~fL~s~~a~~itG~~i~vdGG~~ 323 (329)
T 3lt0_A 301 SFLLSRESRAITGQTIYVDNGLN 323 (329)
T ss_dssp HHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHhCchhccccCcEEEEcCCee
Confidence 99999888999999999999975
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=271.92 Aligned_cols=229 Identities=22% Similarity=0.270 Sum_probs=196.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+||++|||||++|||++++++|+++|++ |++++|+.++. .+.+ + +.++++|++| ++++++++++.+.++
T Consensus 1 ~~k~vlVTGas~giG~~~a~~l~~~G~~--V~~~~r~~~~~---~~~~---~--~~~~~~D~~~-~~~~~~~~~~~~~~g 69 (239)
T 2ekp_A 1 MERKALVTGGSRGIGRAIAEALVARGYR--VAIASRNPEEA---AQSL---G--AVPLPTDLEK-DDPKGLVKRALEALG 69 (239)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSCHHH---HHHH---T--CEEEECCTTT-SCHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHH---HHhh---C--cEEEecCCch-HHHHHHHHHHHHHcC
Confidence 3799999999999999999999999987 99999987652 2222 2 7889999999 999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|+||||||... ..+..+.+.++|++.+++|+.+++.+++.+.|.|.+++.| +||++||..+..+.
T Consensus 70 ~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g------~iv~isS~~~~~~~ 136 (239)
T 2ekp_A 70 GLHVLVHAAAVNV-------RKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWG------RVLFIGSVTTFTAG 136 (239)
T ss_dssp SCCEEEECCCCCC-------CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGGTSCC
T ss_pred CCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc------EEEEECchhhccCC
Confidence 9999999999874 4556677889999999999999999999999999876543 99999999887652
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCChHHHHHH
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTKEFSVQK 256 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~~~~~a~~ 256 (282)
. .+....|++||++++.|+++++.|++++ +|++|+|+||+++|++.... ....+..+..+|+++|+.
T Consensus 137 ~-~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~ 213 (239)
T 2ekp_A 137 G-PVPIPAYTTAKTALLGLTRALAKEWARL--GIRVNLLCPGYVETEFTLPLRQNPELYEPITARIPMGRWARPEEIARV 213 (239)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTCTTSSCBCHHHHHHH
T ss_pred C-CCCCccHHHHHHHHHHHHHHHHHHhhhc--CcEEEEEEeCCccCchhhccccCHHHHHHHHhcCCCCCCcCHHHHHHH
Confidence 1 1567899999999999999999999988 89999999999999985432 122455567899999999
Q ss_pred HHHHHhhcCCCCCCceeecCCcccCC
Q 023441 257 LLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 257 ~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
+.+++++....++|+.+.+|||+..+
T Consensus 214 ~~~l~s~~~~~~tG~~~~vdgG~~~~ 239 (239)
T 2ekp_A 214 AAVLCGDEAEYLTGQAVAVDGGFLAY 239 (239)
T ss_dssp HHHHTSGGGTTCCSCEEEESTTTTTC
T ss_pred HHHHcCchhcCCCCCEEEECCCcccC
Confidence 99999887789999999999997643
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=275.12 Aligned_cols=235 Identities=22% Similarity=0.282 Sum_probs=186.7
Q ss_pred cccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHH
Q 023441 19 SASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 19 ~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~ 98 (282)
+.....++++|++|||||++|||+++|++|+++|++ |++.+|+.++++.+.+.+ ..++.++.+|++|.+++++++
T Consensus 5 ~~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~ 79 (249)
T 3f9i_A 5 HHHHMIDLTGKTSLITGASSGIGSAIARLLHKLGSK--VIISGSNEEKLKSLGNAL---KDNYTIEVCNLANKEECSNLI 79 (249)
T ss_dssp ----CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHH---CSSEEEEECCTTSHHHHHHHH
T ss_pred CccccccCCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEcCCHHHHHHHHHHh---ccCccEEEcCCCCHHHHHHHH
Confidence 345667889999999999999999999999999987 999999887766554443 357899999999999988877
Q ss_pred HHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 99 KSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
++ ++++|++|||||... ..+..+.+.++|++.+++|+.+++.+++.+.|.|.+++.| +||++|
T Consensus 80 ~~----~~~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g------~iv~is 142 (249)
T 3f9i_A 80 SK----TSNLDILVCNAGITS-------DTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYG------RIINIS 142 (249)
T ss_dssp HT----CSCCSEEEECCC--------------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEEC
T ss_pred Hh----cCCCCEEEECCCCCC-------CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------EEEEEc
Confidence 64 478999999999875 4555667788999999999999999999999999876554 999999
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCCh
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTK 250 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~ 250 (282)
|..+..+ .++...|++||++++.|+++++.|++++ +|++++|+||+++|++.+... ...+.....+|
T Consensus 143 S~~~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (249)
T 3f9i_A 143 SIVGIAG---NPGQANYCASKAGLIGMTKSLSYEVATR--GITVNAVAPGFIKSDMTDKLNEKQREAIVQKIPLGTYGIP 217 (249)
T ss_dssp CCCC--C---CSCSHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBC------CCHHHHHHHHHHCTTCSCBCH
T ss_pred cHHhccC---CCCCchhHHHHHHHHHHHHHHHHHHHHc--CcEEEEEecCccccCcccccCHHHHHHHHhcCCCCCCcCH
Confidence 9988876 6677899999999999999999999988 899999999999999876432 23456677899
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+++|+.+++++++....++|+.+.+|||+.
T Consensus 218 ~dva~~~~~l~s~~~~~~tG~~~~vdgG~~ 247 (249)
T 3f9i_A 218 EDVAYAVAFLASNNASYITGQTLHVNGGML 247 (249)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred HHHHHHHHHHcCCccCCccCcEEEECCCEe
Confidence 999999999999888899999999999975
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=277.76 Aligned_cols=235 Identities=16% Similarity=0.244 Sum_probs=197.0
Q ss_pred cccCcEEEEecC--CCchhHHHHHHHHhcCCCcEEEEeecCCCcc-cccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 25 KWKGGVSLVQGA--SRGIGLEFAKQLLEKNDKGCVIATCRNPNGA-TGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 25 ~~~gk~vlItGa--s~giG~a~a~~la~~G~~~~vi~~~r~~~~~-~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
+++||++||||| ++|||+++|++|+++|++ |++++|+.++. +++.+. .+.++.++++|++|+++++++++++
T Consensus 4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (269)
T 2h7i_A 4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQ--LVLTGFDRLRLIQRITDR---LPAKAPLLELDVQNEEHLASLAGRV 78 (269)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCE--EEEEECSCHHHHHHHHTT---SSSCCCEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCchHHHHHHHHHHCCCE--EEEEecChHHHHHHHHHh---cCCCceEEEccCCCHHHHHHHHHHH
Confidence 478999999999 999999999999999987 99999987552 333332 2457899999999999999999999
Q ss_pred HHHcC---CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 102 KEKYG---SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 102 ~~~~~---~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
.+++| ++|+||||||...... ....++.+.+.++|++.+++|+.+++.+++.+.|.|.++ ++||++|
T Consensus 79 ~~~~g~~~~iD~lv~nAg~~~~~~--~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--------g~iv~is 148 (269)
T 2h7i_A 79 TEAIGAGNKLDGVVHSIGFMPQTG--MGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPG--------GSIVGMD 148 (269)
T ss_dssp HHHHCTTCCEEEEEECCCCCCGGG--STTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE--------EEEEEEE
T ss_pred HHHhCCCCCceEEEECCccCcccc--ccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccC--------CeEEEEc
Confidence 99999 9999999999863100 002456678889999999999999999999999999753 3899999
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------------------
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------------- 238 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------------- 238 (282)
|..+ .+ .+.+..|+++|++++.|+++++.|++++ +|+||+|+||+++|++....
T Consensus 149 s~~~-~~---~~~~~~Y~asKaa~~~l~~~la~e~~~~--gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (269)
T 2h7i_A 149 FDPS-RA---MPAYNWMTVAKSALESVNRFVAREAGKY--GVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGW 222 (269)
T ss_dssp CCCS-SC---CTTTHHHHHHHHHHHHHHHHHHHHHHTT--TCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred Cccc-cc---cCchHHHHHHHHHHHHHHHHHHHHhccc--CcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHhh
Confidence 9765 33 5677899999999999999999999988 89999999999999964321
Q ss_pred ccCCCCC-CCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 239 QRNVPEG-KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 239 ~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
....|.. +..+|+|+|+.+.+++++....++|+.+.+|||+.
T Consensus 223 ~~~~p~~rr~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 265 (269)
T 2h7i_A 223 DQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAH 265 (269)
T ss_dssp HHHCTTCCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTGG
T ss_pred hccCCcccCCCCHHHHHHHHHHHhCchhccCcceEEEecCCee
Confidence 1123445 57899999999999999888999999999999964
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=277.57 Aligned_cols=239 Identities=23% Similarity=0.296 Sum_probs=203.8
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..++++||++|||||++|||++++++|+++|++ |++.+|+.++.+.+.+.+...+.++.++.+|++|+++++++++++
T Consensus 38 ~~~~l~~k~vlITGasggIG~~la~~L~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 115 (285)
T 2c07_A 38 YYYCGENKVALVTGAGRGIGREIAKMLAKSVSH--VICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKI 115 (285)
T ss_dssp CCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSE--EEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccccCCCCEEEEECCCcHHHHHHHHHHHHcCCE--EEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHH
Confidence 457788999999999999999999999999987 888898877766555555555678999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+.++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++. ++||++||..
T Consensus 116 ~~~~~~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~------~~iv~isS~~ 182 (285)
T 2c07_A 116 LTEHKNVDILVNNAGITR-------DNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRY------GRIINISSIV 182 (285)
T ss_dssp HHHCSCCCEEEECCCCCC-------CCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC------EEEEEECCTH
T ss_pred HHhcCCCCEEEECCCCCC-------CCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC------CEEEEECChh
Confidence 999999999999999874 455667788999999999999999999999999986554 3999999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFS 253 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~ 253 (282)
+..+ .++...|+++|++++.++++++.|+++. +|++++|+||+++|++..... ...+.....+|+++
T Consensus 183 ~~~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 257 (285)
T 2c07_A 183 GLTG---NVGQANYSSSKAGVIGFTKSLAKELASR--NITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPEEV 257 (285)
T ss_dssp HHHC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCC-----CCHHHHHHHHTTCTTSSCBCHHHH
T ss_pred hccC---CCCCchHHHHHHHHHHHHHHHHHHHHHh--CcEEEEEEeCcEecCchhhcCHHHHHHHHhhCCCCCCCCHHHH
Confidence 7766 5667899999999999999999999988 899999999999999865421 12344567899999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+.+.+++++....++|+.+.+|||+.
T Consensus 258 A~~~~~l~~~~~~~~~G~~i~v~gG~~ 284 (285)
T 2c07_A 258 ANLACFLSSDKSGYINGRVFVIDGGLS 284 (285)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred HHHHHHHhCCCcCCCCCCEEEeCCCcc
Confidence 999999998877889999999999863
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=271.27 Aligned_cols=240 Identities=20% Similarity=0.256 Sum_probs=197.3
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..|+++||++|||||++|||++++++|+++|++ |++++|+.++.+...+.+ +.++.++++|++|+++++++++++
T Consensus 6 ~~~~~~~k~vlVTGasggiG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~ 80 (265)
T 2o23_A 6 ACRSVKGLVAVITGGASGLGLATAERLVGQGAS--AVLLDLPNSGGEAQAKKL---GNNCVFAPADVTSEKDVQTALALA 80 (265)
T ss_dssp --CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECTTSSHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCcHhHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHH
Confidence 457899999999999999999999999999987 999999988766544433 458999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCccccc------ccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEE
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLN------KVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVA 175 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~------~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv 175 (282)
.++++++|+||||||... ..+.. +.+.++|++.+++|+.+++.+++.+.|.|.++........++||
T Consensus 81 ~~~~g~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv 153 (265)
T 2o23_A 81 KGKFGRVDVAVNCAGIAV-------ASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVII 153 (265)
T ss_dssp HHHHSCCCEEEECCCCCC-------CCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEE
T ss_pred HHHCCCCCEEEECCccCC-------CCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 999999999999999874 22221 36778899999999999999999999999876211111235999
Q ss_pred EeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------CCCC-CC
Q 023441 176 NLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------NVPE-GK 246 (282)
Q Consensus 176 ~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~~~~-~~ 246 (282)
++||..+..+ .++...|+++|++++.|+++++.|+++. +|++++|+||+++|++.+.... ..+. .+
T Consensus 154 ~isS~~~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~ 228 (265)
T 2o23_A 154 NTASVAAFEG---QVGQAAYSASKGGIVGMTLPIARDLAPI--GIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPFPSR 228 (265)
T ss_dssp EECCTHHHHC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCCC----------CHHHHTCSSSCS
T ss_pred EeCChhhcCC---CCCCchhHHHHHHHHHHHHHHHHHHhhc--CcEEEEEEeccccCccccccCHHHHHHHHHcCCCcCC
Confidence 9999988766 5667899999999999999999999988 8999999999999998654321 2333 56
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 247 LFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
..+|+++|+.++++++ ...++|+.+.+||++.
T Consensus 229 ~~~~~dva~~~~~l~~--~~~~~G~~i~vdgG~~ 260 (265)
T 2o23_A 229 LGDPAEYAHLVQAIIE--NPFLNGEVIRLDGAIR 260 (265)
T ss_dssp CBCHHHHHHHHHHHHH--CTTCCSCEEEESTTCC
T ss_pred CCCHHHHHHHHHHHhh--cCccCceEEEECCCEe
Confidence 7799999999999986 4689999999999864
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-39 Score=269.95 Aligned_cols=236 Identities=30% Similarity=0.464 Sum_probs=190.9
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcC--CCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKN--DKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G--~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++|++|||||++|||++++++|+++| ++ |++++|+.+..+.+.+. .+.++.++.+|++|+++++++++++.+
T Consensus 1 m~~k~vlItGasggiG~~la~~l~~~g~~~~--V~~~~r~~~~~~~l~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (250)
T 1yo6_A 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRH--IIATARDVEKATELKSI---KDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCE--EEEEESSGGGCHHHHTC---CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHhcCCCcE--EEEEecCHHHHHHHHhc---cCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 368999999999999999999999999 76 99999998776554333 256899999999999999999999999
Q ss_pred HcC--CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcC------CCCCccceeEEE
Q 023441 104 KYG--SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVG------GTGIERDVAVVA 175 (282)
Q Consensus 104 ~~~--~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~------~~g~~~~~~~iv 175 (282)
+++ ++|+||||||... +..++.+.+.+++++.+++|+.+++++++.+.+.|.++ +. .....++||
T Consensus 76 ~~g~~~id~li~~Ag~~~------~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~iv 148 (250)
T 1yo6_A 76 IVGSDGLSLLINNAGVLL------SYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQ-LSVSRAAVI 148 (250)
T ss_dssp HHGGGCCCEEEECCCCCC------CBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSC-CCTTTCEEE
T ss_pred hcCCCCCcEEEECCcccC------CCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCc-ccCCCcEEE
Confidence 998 9999999999863 13455667788999999999999999999999998765 30 000013999
Q ss_pred EeeccccccCCCCC----CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChH
Q 023441 176 NLSARVGSIGDNRL----GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKE 251 (282)
Q Consensus 176 ~~ss~~~~~~~~~~----~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~ 251 (282)
++||..+..+.... ++...|+++|++++.++++++.|+++. +|++++|+||+++|++... ....+|+
T Consensus 149 ~isS~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~-------~~~~~~~ 219 (250)
T 1yo6_A 149 TISSGLGSITDNTSGSAQFPVLAYRMSKAAINMFGRTLAVDLKDD--NVLVVNFCPGWVQTNLGGK-------NAALTVE 219 (250)
T ss_dssp EECCGGGCSTTCCSTTSSSCBHHHHHHHHHHHHHHHHHHHHTGGG--TCEEEEEECCCC--------------------H
T ss_pred EeccCccccCCcccccccCCccHHHHHHHHHHHHHHHHHHHhccC--CeEEEEEcCCceecCCCCC-------CCCCCHH
Confidence 99999887653211 466789999999999999999999987 8999999999999998643 2356899
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
++|+.+++++.......+|+++.+||+.++|
T Consensus 220 ~~a~~~~~~~~~~~~~~~G~~~~~~g~~~~~ 250 (250)
T 1yo6_A 220 QSTAELISSFNKLDNSHNGRFFMRNLKPYEF 250 (250)
T ss_dssp HHHHHHHHHHTTCCGGGTTCEEETTEEECCC
T ss_pred HHHHHHHHHHhcccccCCCeEEEECCcCCCC
Confidence 9999999999987778999999999999999
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-39 Score=273.66 Aligned_cols=246 Identities=19% Similarity=0.308 Sum_probs=206.3
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccc-cccccCCCceeEEEeeCCChhHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL-DLKNRFPERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~-~~~~~~~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
...++++||++|||||++|||++++++|+++|++ |++++|+.++..... ++....+.++.++++|++|+++++++++
T Consensus 7 ~~~~~~~~k~vlITGasggiG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~ 84 (265)
T 1h5q_A 7 GFTISFVNKTIIVTGGNRGIGLAFTRAVAAAGAN--VAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQ 84 (265)
T ss_dssp CEEECCTTEEEEEETTTSHHHHHHHHHHHHTTEE--EEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCcccCCCEEEEECCCchHHHHHHHHHHHCCCe--EEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHH
Confidence 3457789999999999999999999999999987 999999776654332 2222335689999999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.++++++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.+.+++.+ ++||++||
T Consensus 85 ~~~~~~~~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-----~~iv~~sS 152 (265)
T 1h5q_A 85 QIDADLGPISGLIANAGVSV-------VKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQK-----GSIVVTSS 152 (265)
T ss_dssp HHHHHSCSEEEEEECCCCCC-------CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-----EEEEEECC
T ss_pred HHHHhcCCCCEEEECCCcCC-------CCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCC-----ceEEEeCC
Confidence 99999999999999999874 4556677889999999999999999999999998765431 49999999
Q ss_pred cccccCCC----CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCC
Q 023441 180 RVGSIGDN----RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKL 247 (282)
Q Consensus 180 ~~~~~~~~----~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~ 247 (282)
..+..+.. +......|+++|++++.++++++.|+++. +|++++|+||+++|++..... ...+..+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~ 230 (265)
T 1h5q_A 153 MSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWASA--GIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLNRF 230 (265)
T ss_dssp GGGTSCCEEETTEECSCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTTSSC
T ss_pred chhhccccccccccccccccHHHHHHHHHHHHHHHHHHHhc--CcEEEEEecCccccccccccchhHHHHHHhcCcccCC
Confidence 88765421 11226789999999999999999999988 899999999999999865431 12344567
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 248 FTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
.+|+++|+.+.+++++....++|+.+.+|||+..|
T Consensus 231 ~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~~~ 265 (265)
T 1h5q_A 231 AQPEEMTGQAILLLSDHATYMTGGEYFIDGGQLIW 265 (265)
T ss_dssp BCGGGGHHHHHHHHSGGGTTCCSCEEEECTTGGGC
T ss_pred CCHHHHHHHHHhhccCchhcCcCcEEEecCCEeCC
Confidence 79999999999999887788999999999998877
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=273.23 Aligned_cols=237 Identities=23% Similarity=0.337 Sum_probs=185.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEe-ecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT-CRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~-~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|+++||++|||||++|||++++++|+++|++ |++. .|+.+..+...+.+...+.++.++++|++|+++++++++++.
T Consensus 1 M~l~~~~vlItGasggiG~~~a~~l~~~G~~--V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (247)
T 2hq1_A 1 MQLKGKTAIVTGSSRGLGKAIAWKLGNMGAN--IVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAM 78 (247)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCE--EEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHHHCCCE--EEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 5688999999999999999999999999987 8887 677666655555554456789999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+.++++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|.+++.+ +||++||..+
T Consensus 79 ~~~~~~d~vi~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~------~iv~~sS~~~ 145 (247)
T 2hq1_A 79 DAFGRIDILVNNAGITR-------DTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSG------KIINITSIAG 145 (247)
T ss_dssp HHHSCCCEEEECC----------------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCE------EEEEECC---
T ss_pred HhcCCCCEEEECCCCCC-------CCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc------EEEEEcChhh
Confidence 99999999999999874 4455667788899999999999999999999999876543 9999999887
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------ccCCCCCCCCChHHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--------QRNVPEGKLFTKEFSV 254 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--------~~~~~~~~~~~~~~~a 254 (282)
..+ .+....|+++|++++.++++++.|+++. +|++++++||++.|++.... ....+.....+|+++|
T Consensus 146 ~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva 220 (247)
T 2hq1_A 146 IIG---NAGQANYAASKAGLIGFTKSIAKEFAAK--GIYCNAVAPGIIKTDMTDVLPDKVKEMYLNNIPLKRFGTPEEVA 220 (247)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCHHHHTSCHHHHHHHHTTSTTSSCBCHHHHH
T ss_pred ccC---CCCCcHhHHHHHHHHHHHHHHHHHHHHc--CcEEEEEEEEEEeccchhhcchHHHHHHHhhCCCCCCCCHHHHH
Confidence 766 4567899999999999999999999988 89999999999999865432 1223445677999999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCccc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.+.+++++....++|+.+.+||++.
T Consensus 221 ~~~~~l~~~~~~~~~G~~~~v~gG~~ 246 (247)
T 2hq1_A 221 NVVGFLASDDSNYITGQVINIDGGLV 246 (247)
T ss_dssp HHHHHHHSGGGTTCCSCEEEESTTC-
T ss_pred HHHHHHcCcccccccCcEEEeCCCcc
Confidence 99999998777789999999999864
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-39 Score=272.88 Aligned_cols=236 Identities=22% Similarity=0.301 Sum_probs=202.4
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCce-eEEEeeCCChhHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERL-DVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v-~~~~~Dls~~~~~~~~~~~~ 101 (282)
.|+++||++|||||++|||++++++|+++|++ |++++|+.++.+...+.+ +.++ .++.+|++|.++++++++++
T Consensus 6 ~~~~~~k~vlITGasggiG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (254)
T 2wsb_A 6 VFRLDGACAAVTGAGSGIGLEICRAFAASGAR--LILIDREAAALDRAAQEL---GAAVAARIVADVTDAEAMTAAAAEA 80 (254)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHH---GGGEEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHh---cccceeEEEEecCCHHHHHHHHHHH
Confidence 46789999999999999999999999999987 999999987665544333 3466 88999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+ ++++|+||||||... ..+..+.+.++|++.+++|+.+++.+++.+.|.+++++. ++||++||..
T Consensus 81 ~~-~~~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~------~~iv~isS~~ 146 (254)
T 2wsb_A 81 EA-VAPVSILVNSAGIAR-------LHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGA------GAIVNLGSMS 146 (254)
T ss_dssp HH-HSCCCEEEECCCCCC-------CBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC------EEEEEECCGG
T ss_pred Hh-hCCCcEEEECCccCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC------cEEEEEecch
Confidence 98 899999999999874 445566778899999999999999999999999987654 3999999998
Q ss_pred cccCCCCCCCc--ccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCC
Q 023441 182 GSIGDNRLGGW--HSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFT 249 (282)
Q Consensus 182 ~~~~~~~~~~~--~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~ 249 (282)
+..+ .+.. ..|+++|++++.++++++.|+++. +|++++++||++.|++..... ...+.....+
T Consensus 147 ~~~~---~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (254)
T 2wsb_A 147 GTIV---NRPQFASSYMASKGAVHQLTRALAAEWAGR--GVRVNALAPGYVATEMTLKMRERPELFETWLDMTPMGRCGE 221 (254)
T ss_dssp GTSC---CSSSCBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTSTTSSCBC
T ss_pred hccC---CCCCcchHHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEEecccCchhhhccccChHHHHHHHhcCCCCCCCC
Confidence 8765 3344 789999999999999999999988 899999999999999754221 1234456779
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
|+++|+.+++++++....++|+.+.+||++..|
T Consensus 222 ~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~~~ 254 (254)
T 2wsb_A 222 PSEIAAAALFLASPAASYVTGAILAVDGGYTVW 254 (254)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred HHHHHHHHHHHhCcccccccCCEEEECCCEecC
Confidence 999999999999887788999999999999888
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=277.14 Aligned_cols=233 Identities=21% Similarity=0.259 Sum_probs=195.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHh---cCCCcEEEEeecCCCcccccccccccC--CCceeEEEeeCCChhHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLE---KNDKGCVIATCRNPNGATGLLDLKNRF--PERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~---~G~~~~vi~~~r~~~~~~~~~~~~~~~--~~~v~~~~~Dls~~~~~~~~~ 98 (282)
.+++||++|||||++|||++++++|++ +|++ |++++|+.+..+...+.+... +.++.++++|++|++++++++
T Consensus 2 ~~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~ 79 (259)
T 1oaa_A 2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSV--MLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLL 79 (259)
T ss_dssp CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCE--EEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHH
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCe--EEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHH
Confidence 357899999999999999999999999 8987 999999987766554444322 457999999999999999999
Q ss_pred HHHHH--HcCCcc--EEEECcccCCCCCCCCCcccccc-cchhhhhhhhhhhhcHHHHHHHHhhhhhhcC--CCCCccce
Q 023441 99 KSIKE--KYGSLN--LLINASGILSIPNVLQPETTLNK-VEKSSLMLAYEVNAVGPILVIKHMSPLLKVG--GTGIERDV 171 (282)
Q Consensus 99 ~~~~~--~~~~id--~lv~~ag~~~~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~--~~g~~~~~ 171 (282)
+++.+ .++++| +||||||.... ...++.+ .+.++|++.+++|+.+++++++.+.|.|.++ +.
T Consensus 80 ~~~~~~~~~g~~d~~~lvnnAg~~~~-----~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~------ 148 (259)
T 1oaa_A 80 SAVRELPRPEGLQRLLLINNAATLGD-----VSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLS------ 148 (259)
T ss_dssp HHHHHSCCCTTCCEEEEEECCCCCCC-----CSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCE------
T ss_pred HHHHhccccccCCccEEEECCcccCC-----CCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC------
Confidence 99998 778899 99999998631 0134556 6789999999999999999999999999876 33
Q ss_pred eEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-----------
Q 023441 172 AVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------- 240 (282)
Q Consensus 172 ~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------- 240 (282)
++||++||..+..+ .++...|++||++++.|+++++.|++ +|+||+|+||+++|++.+....
T Consensus 149 g~iv~isS~~~~~~---~~~~~~Y~asKaa~~~~~~~la~e~~----~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~ 221 (259)
T 1oaa_A 149 KTVVNISSLCALQP---YKGWGLYCAGKAARDMLYQVLAAEEP----SVRVLSYAPGPLDNDMQQLARETSKDPELRSKL 221 (259)
T ss_dssp EEEEEECCGGGTSC---CTTCHHHHHHHHHHHHHHHHHHHHCT----TEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHH
T ss_pred ceEEEEcCchhcCC---CCCccHHHHHHHHHHHHHHHHHhhCC----CceEEEecCCCcCcchHHHHhhccCChhHHHHH
Confidence 49999999998766 66778999999999999999999985 3999999999999998553211
Q ss_pred --CCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 241 --NVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 241 --~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
..+..+..+|+++|+.+++++++ ...++|+.+.+||
T Consensus 222 ~~~~p~~~~~~p~dvA~~v~~l~~~-~~~itG~~i~vdg 259 (259)
T 1oaa_A 222 QKLKSDGALVDCGTSAQKLLGLLQK-DTFQSGAHVDFYD 259 (259)
T ss_dssp HHHHHTTCSBCHHHHHHHHHHHHHH-CCSCTTEEEETTC
T ss_pred HHhhhcCCcCCHHHHHHHHHHHHhh-ccccCCcEEeccC
Confidence 12245678999999999999986 5789999999886
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=274.07 Aligned_cols=225 Identities=16% Similarity=0.193 Sum_probs=193.1
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEe-e--cCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT-C--RNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~-~--r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
||++|||||++|||++++++|+++|++ |+++ + |+.++.+...+.+ .+ +|+.|.++++++++++.++
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~~~~r~~~~~~~~~~~~--~~-------~~~~~~~~v~~~~~~~~~~ 69 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYT--VVCHDASFADAAERQRFESEN--PG-------TIALAEQKPERLVDATLQH 69 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCE--EEECCGGGGSHHHHHHHHHHS--TT-------EEECCCCCGGGHHHHHGGG
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE--EEEecCCcCCHHHHHHHHHHh--CC-------CcccCHHHHHHHHHHHHHH
Confidence 689999999999999999999999987 9998 6 9877665544333 11 2444888899999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCc---ccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPE---TTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
++++|+||||||... . .++.+.+.++|++.+++|+.+++.+++.+.|.|.+++.| +||++||..
T Consensus 70 ~g~iD~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g------~iv~isS~~ 136 (244)
T 1zmo_A 70 GEAIDTIVSNDYIPR-------PMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGA------SVIFITSSV 136 (244)
T ss_dssp SSCEEEEEECCCCCT-------TGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE------EEEEECCGG
T ss_pred cCCCCEEEECCCcCC-------CCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc------EEEEECChh
Confidence 999999999999874 3 566778889999999999999999999999999877654 999999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCC---cccc---------c-CCCCCCCC
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS---RPFQ---------R-NVPEGKLF 248 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~---~~~~---------~-~~~~~~~~ 248 (282)
+..+ .++...|++||++++.|+++++.|++++ +|+||+|+||+++|++. +... . ..+..+..
T Consensus 137 ~~~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~p~~r~~ 211 (244)
T 1zmo_A 137 GKKP---LAYNPLYGPARAATVALVESAAKTLSRD--GILLYAIGPNFFNNPTYFPTSDWENNPELRERVDRDVPLGRLG 211 (244)
T ss_dssp GTSC---CTTCTTHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESSBCBTTTBCHHHHHHCHHHHHHHHHHCTTCSCB
T ss_pred hCCC---CCCchHHHHHHHHHHHHHHHHHHHHhhc--CcEEEEEeeCCCcCCcccccccccchHHHHHHHhcCCCCCCCc
Confidence 8766 5677899999999999999999999988 89999999999999997 4321 1 34556778
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
+|+++|+.+.+++++....++|+.+.+|||+.|
T Consensus 212 ~pe~vA~~v~~l~s~~~~~~tG~~i~vdgG~~p 244 (244)
T 1zmo_A 212 RPDEMGALITFLASRRAAPIVGQFFAFTGGYLP 244 (244)
T ss_dssp CHHHHHHHHHHHHTTTTGGGTTCEEEESTTCCC
T ss_pred CHHHHHHHHHHHcCccccCccCCEEEeCCCCCC
Confidence 999999999999998888999999999999865
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-39 Score=270.70 Aligned_cols=231 Identities=21% Similarity=0.273 Sum_probs=189.6
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|++|||||++|||++++++|+++|++ |++.+|+.++++...+.+ +.++.++++|++|+++++++++++.++++++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 75 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHK--VIATGRRQERLQELKDEL---GDNLYIAQLDVRNRAAIEEMLASLPAEWCNI 75 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHTSCTTTCCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHh---cCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 68999999999999999999999987 999999987665544433 3578999999999999999999999999999
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|+||||||+.. ...+..+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..+..+
T Consensus 76 D~lvnnAg~~~------~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g------~iv~isS~~~~~~--- 140 (248)
T 3asu_A 76 DILVNNAGLAL------GMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHG------HIINIGSTAGSWP--- 140 (248)
T ss_dssp CEEEECCCCCC------CCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC------EEEEECCGGGTSC---
T ss_pred CEEEECCCcCC------CCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc------eEEEEccchhccC---
Confidence 99999999862 13456677889999999999999999999999999876554 9999999988766
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEeccccc-CCCCccc-ccC-------CCCCCCCChHHHHHHHHH
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVD-TDLSRPF-QRN-------VPEGKLFTKEFSVQKLLN 259 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~-t~~~~~~-~~~-------~~~~~~~~~~~~a~~~~~ 259 (282)
.++...|++||++++.|+++++.|+++. +|+||+|+||+++ |++.... ... .......+|+++|+.+++
T Consensus 141 ~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~v~~v~PG~v~gT~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~ 218 (248)
T 3asu_A 141 YAGGNVYGATKAFVRQFSLNLRTDLHGT--AVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWW 218 (248)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTTTS--CCEEEEEEECSBCC----------------------CCBCHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhhc--CcEEEEEeccccccCcchhhcccCchHHHHHHHhccCCCCHHHHHHHHHH
Confidence 5677899999999999999999999988 8999999999999 9986421 100 011234699999999999
Q ss_pred HHhhcCCCCCCceeecCCcccCC
Q 023441 260 IINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 260 ~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
++++ ...++|+.+.++.....|
T Consensus 219 l~s~-~~~~~g~~i~v~~~~~~~ 240 (248)
T 3asu_A 219 VSTL-PAHVNINTLEMMPVTQSY 240 (248)
T ss_dssp HHHS-CTTCCCCEEEECCTTCCC
T ss_pred HhcC-CccceeeEEEEcccccch
Confidence 9986 468899999887665443
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=274.73 Aligned_cols=244 Identities=18% Similarity=0.219 Sum_probs=204.8
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
...|+++||++|||||++|||++++++|+++|++ |++++|+.+..+...+.+...+.++.++++|++|.+++++++++
T Consensus 27 ~~~~~l~~k~vlITGasggIG~~la~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 104 (279)
T 3ctm_A 27 LDLFSLKGKVASVTGSSGGIGWAVAEAYAQAGAD--VAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQ 104 (279)
T ss_dssp GGGGCCTTCEEEETTTTSSHHHHHHHHHHHHTCE--EEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHH
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHH
Confidence 4457799999999999999999999999999987 99999998776655555444466899999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCccccc-ccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLN-KVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
+.+.++++|+||||||... ...+.. +.+.++|++.+++|+.+++.+++.+.+.+.+++.+ +||++||
T Consensus 105 ~~~~~g~id~li~~Ag~~~------~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~------~iv~isS 172 (279)
T 3ctm_A 105 QEKDFGTIDVFVANAGVTW------TQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKG------SLIITSS 172 (279)
T ss_dssp HHHHHSCCSEEEECGGGST------TC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC------EEEEECC
T ss_pred HHHHhCCCCEEEECCcccc------cCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC------eEEEECc
Confidence 9999999999999999874 113444 66788999999999999999999999999876554 9999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChH
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKE 251 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~ 251 (282)
..+..+. ..+....|+++|++++.++++++.|+++. + ++++|+||+++|++.+... ...+..+..+|+
T Consensus 173 ~~~~~~~-~~~~~~~Y~~sK~a~~~~~~~la~e~~~~--~-~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~ 248 (279)
T 3ctm_A 173 ISGKIVN-IPQLQAPYNTAKAACTHLAKSLAIEWAPF--A-RVNTISPGYIDTDITDFASKDMKAKWWQLTPLGREGLTQ 248 (279)
T ss_dssp CTTSCC----CCHHHHHHHHHHHHHHHHHHHHHTTTT--C-EEEEEEECSBSSTTTSSCCHHHHHHHHHHSTTCSCBCGG
T ss_pred hHhccCC-CCCCcccHHHHHHHHHHHHHHHHHHhccc--C-CEEEEeccCCccccccccChHHHHHHHHhCCccCCcCHH
Confidence 8876541 13456789999999999999999999987 7 9999999999999865321 123455678999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
++|+.+.+++++....++|+.+.+|||+..|
T Consensus 249 dvA~~~~~l~s~~~~~~tG~~i~vdgG~~~~ 279 (279)
T 3ctm_A 249 ELVGGYLYLASNASTFTTGSDVVIDGGYTCP 279 (279)
T ss_dssp GTHHHHHHHHSGGGTTCCSCEEEESTTCCC-
T ss_pred HHHHHHHHHhCccccCccCCEEEECCCeecC
Confidence 9999999999987789999999999997643
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=275.71 Aligned_cols=239 Identities=21% Similarity=0.191 Sum_probs=191.3
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||++|||||++|||++++++|+++|++ |++.+|+.++.+...+.+...+.++.++++|++|+++++++++++.++
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T 2qq5_A 2 PMNGQVCVVTGASRGIGRGIALQLCKAGAT--VYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDRE 79 (260)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999999999987 999999987766555444444568999999999999999999999887
Q ss_pred -cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 105 -YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 105 -~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++++|+||||||............+..+.+.+.|+..+++|+.+++++++.+.|.|.+++.| +||++||..+.
T Consensus 80 ~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g------~iv~isS~~~~ 153 (260)
T 2qq5_A 80 QQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQG------LIVVISSPGSL 153 (260)
T ss_dssp HTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCC------EEEEECCGGGT
T ss_pred cCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCc------EEEEEcChhhc
Confidence 89999999999532100000002345567778999999999999999999999999876654 99999999876
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC-------------CCCCCCCCh
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN-------------VPEGKLFTK 250 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~-------------~~~~~~~~~ 250 (282)
.+ .....|++||++++.|+++++.|++++ +|+||+|+||+++|++....... .+.....+|
T Consensus 154 ~~----~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 227 (260)
T 2qq5_A 154 QY----MFNVPYGVGKAACDKLAADCAHELRRH--GVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAETT 227 (260)
T ss_dssp SC----CSSHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEECCCSCTTTC----------------------CHHHHH
T ss_pred CC----CCCCchHHHHHHHHHHHHHHHHHhccC--CeEEEEEecCccccHHHHHhhccccccchhHHHHHHhhhccCCCH
Confidence 54 235789999999999999999999988 89999999999999986542111 011122479
Q ss_pred HHHHHHHHHHHhhcC-CCCCCceeecCC
Q 023441 251 EFSVQKLLNIINNIK-SHDNGKFFAWDG 277 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~-~~~~g~~~~~d~ 277 (282)
+++|+.+++++++.. ..++|+.+..|+
T Consensus 228 e~va~~v~~l~s~~~~~~itG~~i~~~~ 255 (260)
T 2qq5_A 228 ELSGKCVVALATDPNILSLSGKVLPSCD 255 (260)
T ss_dssp HHHHHHHHHHHTCTTGGGGTTCEEEHHH
T ss_pred HHHHHHHHHHhcCcccccccceeechhh
Confidence 999999999998875 478999998764
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=268.92 Aligned_cols=236 Identities=22% Similarity=0.309 Sum_probs=202.0
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||++|||||++|||++++++|+++|++ |++++|+.+..+...+.+... .++.++.+|++|+++++++++.+.++
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK--VMITGRHSDVGEKAAKSVGTP-DQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHCCT-TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHhhcc-CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999987 999999887665544433322 57999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||... ..+..+.+.++|++.+++|+.+++.+++.+.|.|.+++.+ ++||++||..+..
T Consensus 80 ~~~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~-----~~iv~isS~~~~~ 147 (251)
T 1zk4_A 80 FGPVSTLVNNAGIAV-------NKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLG-----ASIINMSSIEGFV 147 (251)
T ss_dssp HSSCCEEEECCCCCC-------CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSC-----EEEEEECCGGGTS
T ss_pred hCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC-----CEEEEeCCchhcc
Confidence 999999999999874 4456677889999999999999999999999999876541 3999999998876
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhc--cCCCCeEEEEEecccccCCCCcccc---------cCCCCCCCCChHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFG--RKKDPVICILLHPGTVDTDLSRPFQ---------RNVPEGKLFTKEFS 253 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~--~~~~~i~v~~i~Pg~v~t~~~~~~~---------~~~~~~~~~~~~~~ 253 (282)
+ .++...|+++|++++.++++++.|+. +. +|++++++||++.|++..... ...+.....+|+++
T Consensus 148 ~---~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~--~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 222 (251)
T 1zk4_A 148 G---DPSLGAYNASKGAVRIMSKSAALDCALKDY--DVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPNDI 222 (251)
T ss_dssp C---CTTCHHHHHHHHHHHHHHHHHHHHHHHTTC--SEEEEEEEECCBCCHHHHTSTTHHHHHTSTTTCTTSSCBCHHHH
T ss_pred C---CCCCccchHHHHHHHHHHHHHHHHhcccCC--CeEEEEEeeCcCcchhhhhcCchhhhHHHhhcCCCCCCcCHHHH
Confidence 6 56778999999999999999999988 55 899999999999998754321 12344567799999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+.+.+++++....++|+.+.+||++.
T Consensus 223 a~~~~~l~~~~~~~~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 223 AYICVYLASNESKFATGSEFVVDGGYT 249 (251)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHcCcccccccCcEEEECCCcc
Confidence 999999998877889999999999975
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=274.65 Aligned_cols=239 Identities=19% Similarity=0.236 Sum_probs=187.5
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..|+++||++|||||++|||++++++|+++|++ |++++|+.++.+...+.+...+.++.++.+|++|.++++++++++
T Consensus 8 ~~~~l~~k~vlITGasggiG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 85 (266)
T 1xq1_A 8 QRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAV--IHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTV 85 (266)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHH
Confidence 447789999999999999999999999999987 999999987766555544444668999999999999999999999
Q ss_pred HHHc-CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 102 KEKY-GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 102 ~~~~-~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
.+.+ +++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|++++.+ +||++||.
T Consensus 86 ~~~~~~~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~------~iv~isS~ 152 (266)
T 1xq1_A 86 SSMFGGKLDILINNLGAIR-------SKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCG------NIIFMSSI 152 (266)
T ss_dssp HHHHTTCCSEEEEECCC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC------EEEEEC--
T ss_pred HHHhCCCCcEEEECCCCCC-------CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc------EEEEEccc
Confidence 9999 89999999999864 4456677889999999999999999999999999876554 99999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc---------cCCCCCCCCChH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ---------RNVPEGKLFTKE 251 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~---------~~~~~~~~~~~~ 251 (282)
.+..+ .+....|+++|++++.++++++.|+++. +|++++|+||++.|++.+... ...+.....+|+
T Consensus 153 ~~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (266)
T 1xq1_A 153 AGVVS---ASVGSIYSATKGALNQLARNLACEWASD--GIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPE 227 (266)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEECCSCC-------------------------CCGG
T ss_pred hhccC---CCCCchHHHHHHHHHHHHHHHHHHHhHh--CcEEEEEeeCCCccchhhhhcCHHHHHHHHhcCCCCCCcCHH
Confidence 88765 5567899999999999999999999988 899999999999999865321 112334567999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++|+.+.+++++....++|+.+.+||++.
T Consensus 228 dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 256 (266)
T 1xq1_A 228 EVSSLVAFLCMPAASYITGQTICVDGGLT 256 (266)
T ss_dssp GGHHHHHHHTSGGGTTCCSCEEECCCCEE
T ss_pred HHHHHHHHHcCccccCccCcEEEEcCCcc
Confidence 99999999998777889999999999864
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=270.85 Aligned_cols=236 Identities=21% Similarity=0.288 Sum_probs=198.7
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC-------CceeEEEeeCCChhHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP-------ERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~-------~~v~~~~~Dls~~~~~~~~ 97 (282)
+++||++|||||++|||++++++|+++|++ |++++|+.++.+...+.+...+ .++.++++|++|.++++++
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 81 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGAT--VAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCL 81 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHH
Confidence 478999999999999999999999999987 9999999877665544444333 5789999999999999999
Q ss_pred HHHHHHHcCCc-cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEE
Q 023441 98 AKSIKEKYGSL-NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVA 175 (282)
Q Consensus 98 ~~~~~~~~~~i-d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv 175 (282)
++.+.++++++ |+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|.+++ . ++||
T Consensus 82 ~~~~~~~~g~i~d~vi~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~------g~iv 148 (264)
T 2pd6_A 82 LEQVQACFSRPPSVVVSCAGITQ-------DEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCR------GSII 148 (264)
T ss_dssp HHHHHHHHSSCCSEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC------EEEE
T ss_pred HHHHHHHhCCCCeEEEECCCcCC-------CcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC------ceEE
Confidence 99999999999 99999999874 45666778899999999999999999999999987654 3 3999
Q ss_pred EeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCC
Q 023441 176 NLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKL 247 (282)
Q Consensus 176 ~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~ 247 (282)
++||..+..+ .++...|+++|++++.+++.++.|+++. +|++++++||++.|++.+... ...+....
T Consensus 149 ~isS~~~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~ 223 (264)
T 2pd6_A 149 NISSIVGKVG---NVGQTNYAASKAGVIGLTQTAARELGRH--GIRCNSVLPGFIATPMTQKVPQKVVDKITEMIPMGHL 223 (264)
T ss_dssp EECCTHHHHC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCSCC----------CTGGGCTTCSC
T ss_pred EECChhhccC---CCCChhhHHHHHHHHHHHHHHHHHhhhc--CeEEEEEeeecccccchhhcCHHHHHHHHHhCCCCCC
Confidence 9999987766 5667899999999999999999999988 899999999999999865321 12334556
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 248 FTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+|+++|+.+.+++++....++|+.+.+||++.
T Consensus 224 ~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~ 256 (264)
T 2pd6_A 224 GDPEDVADVVAFLASEDSGYITGTSVEVTGGLF 256 (264)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC-
T ss_pred CCHHHHHHHHHHHcCCcccCCCCCEEEECCCce
Confidence 799999999999998777889999999999864
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=273.29 Aligned_cols=242 Identities=22% Similarity=0.293 Sum_probs=204.9
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC-CCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN-PNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~-~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++||++|||||++|||++++++|+++|++ |++++|+ .+..+.+.+.+...+.++.++.+|++|+++++++++++.+
T Consensus 4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (258)
T 3afn_B 4 DLKGKRVLITGSSQGIGLATARLFARAGAK--VGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVA 81 (258)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999987 9999998 6666655555544466899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC--CCCccceeEEEEeeccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG--TGIERDVAVVANLSARV 181 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~--~g~~~~~~~iv~~ss~~ 181 (282)
+++++|+||||||... ...+..+.+.+.|++.+++|+.+++++++.+.|.|.+++ .+ ..++||++||..
T Consensus 82 ~~g~id~vi~~Ag~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~---~~~~iv~~sS~~ 152 (258)
T 3afn_B 82 KFGGIDVLINNAGGLV------GRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASG---QTSAVISTGSIA 152 (258)
T ss_dssp HHSSCSEEEECCCCCC------CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT---SCEEEEEECCTH
T ss_pred HcCCCCEEEECCCCcC------CcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCC---CCcEEEEecchh
Confidence 9999999999999732 145566778889999999999999999999999987543 10 113899999988
Q ss_pred ccc-CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------ccCCCCCCCCChHH
Q 023441 182 GSI-GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--------QRNVPEGKLFTKEF 252 (282)
Q Consensus 182 ~~~-~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--------~~~~~~~~~~~~~~ 252 (282)
+.. + .++...|+++|++++.+++.++.|+++. +|++++++||++.|++.... ....+.....+|++
T Consensus 153 ~~~~~---~~~~~~Y~~sK~a~~~~~~~~~~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~d 227 (258)
T 3afn_B 153 GHTGG---GPGAGLYGAAKAFLHNVHKNWVDFHTKD--GVRFNIVSPGTVDTAFHADKTQDVRDRISNGIPMGRFGTAEE 227 (258)
T ss_dssp HHHCC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBSSGGGTTCCHHHHHHHHTTCTTCSCBCGGG
T ss_pred hccCC---CCCchHHHHHHHHHHHHHHHHHHhhccc--CeEEEEEeCCCcccccccccCHHHHHHHhccCCCCcCCCHHH
Confidence 765 4 4567899999999999999999999988 89999999999999986532 12234556789999
Q ss_pred HHHHHHHHHhhcCC-CCCCceeecCCcccCC
Q 023441 253 SVQKLLNIINNIKS-HDNGKFFAWDGQEIPW 282 (282)
Q Consensus 253 ~a~~~~~~~~~~~~-~~~g~~~~~d~~~~~~ 282 (282)
+|+.+.+++++... .++|+.+.+||++..|
T Consensus 228 va~~~~~l~~~~~~~~~~G~~~~v~gg~~~~ 258 (258)
T 3afn_B 228 MAPAFLFFASHLASGYITGQVLDINGGQYKH 258 (258)
T ss_dssp THHHHHHHHCHHHHTTCCSEEEEESTTSSCC
T ss_pred HHHHHHHHhCcchhccccCCEEeECCCccCc
Confidence 99999999987665 8899999999999887
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-39 Score=278.60 Aligned_cols=222 Identities=16% Similarity=0.212 Sum_probs=193.3
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||++|||||++|||+++|++|+++|++ |++++|+.+.++++.+.+...+.++.++++|++|.++++++++++.++
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRGAR--LVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRL 105 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 489999999999999999999999999987 999999998887766666666778999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||+.. ..+..+.+.++|++.+++|+.+++++++++.|.|.+++.+ ++||++||..+..
T Consensus 106 ~g~id~lvnnAg~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~-----g~iv~isS~~~~~ 173 (301)
T 3tjr_A 106 LGGVDVVFSNAGIVV-------AGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTG-----GHIAFTASFAGLV 173 (301)
T ss_dssp HSSCSEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSC-----EEEEEECCGGGTS
T ss_pred CCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC-----cEEEEeCchhhcC
Confidence 999999999999985 5677788899999999999999999999999999876522 4999999999887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc------------------CCCCCC
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR------------------NVPEGK 246 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~------------------~~~~~~ 246 (282)
+ .++...|++||++++.|+++++.|+++. +|+|++|+||+++|++...... ......
T Consensus 174 ~---~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (301)
T 3tjr_A 174 P---NAGLGTYGVAKYGVVGLAETLAREVKPN--GIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDE 248 (301)
T ss_dssp C---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEECCSCCCSSHHHHHHHHC----------------------
T ss_pred C---CCCchHHHHHHHHHHHHHHHHHHHhccc--CcEEEEEECCccccccccccccccchhhccccChhhhccccccccC
Confidence 7 6778899999999999999999999988 8999999999999998653210 011124
Q ss_pred CCChHHHHHHHHHHHhhcC
Q 023441 247 LFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~ 265 (282)
..+|+++|+.++..+....
T Consensus 249 ~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 249 SVSADDVARLTADAILANR 267 (301)
T ss_dssp CCCHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 5699999999999998654
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=268.30 Aligned_cols=232 Identities=13% Similarity=0.162 Sum_probs=201.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCC-------CcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKND-------KGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~-------~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
+||++|||||++|||++++++|+++|+ + |++.+|+.+..+.+.+.+...+.++.++++|++|+++++++++
T Consensus 1 ~~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 78 (244)
T 2bd0_A 1 MKHILLITGAGKGIGRAIALEFARAARHHPDFEPV--LVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTT 78 (244)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEE--EEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHhcCcccccceE--EEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHH
Confidence 478999999999999999999999998 6 9999998877666555555556789999999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.++++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++. ++||++||
T Consensus 79 ~~~~~~g~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~------~~iv~isS 145 (244)
T 2bd0_A 79 HIVERYGHIDCLVNNAGVGR-------FGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHS------GHIFFITS 145 (244)
T ss_dssp HHHHHTSCCSEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC------EEEEEECC
T ss_pred HHHHhCCCCCEEEEcCCcCC-------cCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC------CEEEEEec
Confidence 99999999999999999874 456667788999999999999999999999999976554 39999999
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHH
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLN 259 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~ 259 (282)
..+..+ .++...|+++|++++.|+++++.|+++. +|++++++||++.|++........ .....+|+++|+.+++
T Consensus 146 ~~~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~-~~~~~~~~dva~~~~~ 219 (244)
T 2bd0_A 146 VAATKA---FRHSSIYCMSKFGQRGLVETMRLYARKC--NVRITDVQPGAVYTPMWGKVDDEM-QALMMMPEDIAAPVVQ 219 (244)
T ss_dssp GGGTSC---CTTCHHHHHHHHHHHHHHHHHHHHHTTT--TEEEEEEEECCBCSTTTCCCCSTT-GGGSBCHHHHHHHHHH
T ss_pred chhcCC---CCCCchhHHHHHHHHHHHHHHHHHhhcc--CcEEEEEECCCccchhhhhccccc-cccCCCHHHHHHHHHH
Confidence 988766 5667899999999999999999999988 899999999999999876543211 2356799999999999
Q ss_pred HHhhcCCCCCCceeecCCcc
Q 023441 260 IINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 260 ~~~~~~~~~~g~~~~~d~~~ 279 (282)
+++.....++|..+..++++
T Consensus 220 l~~~~~~~~~g~~~~~~~~~ 239 (244)
T 2bd0_A 220 AYLQPSRTVVEEIILRPTSG 239 (244)
T ss_dssp HHTSCTTEEEEEEEEEETTC
T ss_pred HHhCCccccchheEEecccc
Confidence 99988888999998887754
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-38 Score=269.32 Aligned_cols=242 Identities=19% Similarity=0.241 Sum_probs=201.7
Q ss_pred cccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHH
Q 023441 19 SASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 19 ~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~ 98 (282)
+....++++||++|||||++|||++++++|+++|++ |++++|+.+..+...+.+.. ..++.++++|++|++++++++
T Consensus 7 ~~~~~~~l~~k~vlITGasggiG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~ 83 (278)
T 2bgk_A 7 PDSSTNRLQDKVAIITGGAGGIGETTAKLFVRYGAK--VVIADIADDHGQKVCNNIGS-PDVISFVHCDVTKDEDVRNLV 83 (278)
T ss_dssp ----CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHH
T ss_pred CCCCcccccCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEcCChhHHHHHHHHhCC-CCceEEEECCCCCHHHHHHHH
Confidence 344567889999999999999999999999999987 99999987665544333322 237999999999999999999
Q ss_pred HHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 99 KSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
+++.++++++|+||||||.... ...++.+.+.++|++.+++|+.+++++++.+.|.|.+++.+ +||++|
T Consensus 84 ~~~~~~~~~id~li~~Ag~~~~-----~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------~iv~is 152 (278)
T 2bgk_A 84 DTTIAKHGKLDIMFGNVGVLST-----TPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKG------SIVFTA 152 (278)
T ss_dssp HHHHHHHSCCCEEEECCCCCCS-----SCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCE------EEEEEC
T ss_pred HHHHHHcCCCCEEEECCcccCC-----CCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCC------eEEEEe
Confidence 9999999999999999998641 12345667789999999999999999999999999876543 999999
Q ss_pred ccccccCCCCCC-CcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC-------------CCC
Q 023441 179 ARVGSIGDNRLG-GWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN-------------VPE 244 (282)
Q Consensus 179 s~~~~~~~~~~~-~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~-------------~~~ 244 (282)
|..+..+ .+ ....|+++|++++.+++.++.|+++. +|++++++||++.|++....... .+.
T Consensus 153 S~~~~~~---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (278)
T 2bgk_A 153 SISSFTA---GEGVSHVYTATKHAVLGLTTSLCTELGEY--GIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLK 227 (278)
T ss_dssp CGGGTCC---CTTSCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSC
T ss_pred eccccCC---CCCCCcchHHHHHHHHHHHHHHHHHHhhc--CcEEEEEEeceecchhhhhhcccchhHHHHhhhcccccc
Confidence 9988765 34 56789999999999999999999988 89999999999999986643211 123
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 245 GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
....+|+++|+.+++++++....++|+.+.+||++
T Consensus 228 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 262 (278)
T 2bgk_A 228 GTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGY 262 (278)
T ss_dssp SCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cccCCHHHHHHHHHHHcCcccccCCCCEEEECCcc
Confidence 45779999999999999877788999999999986
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=269.22 Aligned_cols=236 Identities=24% Similarity=0.346 Sum_probs=202.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc-CCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR-FPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~-~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
++++||+++||||++|||++++++|+++|++ |++++|+.++.+.+.+.+.+ .+.++.++.+|++|+++++++++++.
T Consensus 3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (248)
T 2pnf_A 3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGST--VIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIY 80 (248)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999987 99999988766554443322 35689999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+.++++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.+.+++. ++||++||..+
T Consensus 81 ~~~~~~d~vi~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~------~~iv~~sS~~~ 147 (248)
T 2pnf_A 81 NLVDGIDILVNNAGITR-------DKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRW------GRIVNISSVVG 147 (248)
T ss_dssp HHSSCCSEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTC------EEEEEECCHHH
T ss_pred HhcCCCCEEEECCCCCC-------CCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC------cEEEEEccHHh
Confidence 99999999999999874 455667788899999999999999999999999987654 39999999877
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFSV 254 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~a 254 (282)
..+ .++...|+++|++++.+++.++.|+++. +|++++++||++.|++..... ...+.....+|+++|
T Consensus 148 ~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva 222 (248)
T 2pnf_A 148 FTG---NVGQVNYSTTKAGLIGFTKSLAKELAPR--NVLVNAVAPGFIETDMTAVLSEEIKQKYKEQIPLGRFGSPEEVA 222 (248)
T ss_dssp HHC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTTSSCBCHHHHH
T ss_pred cCC---CCCCchHHHHHHHHHHHHHHHHHHhccc--CeEEEEEEeceecCchhhhccHHHHHHHHhcCCCCCccCHHHHH
Confidence 665 4567899999999999999999999987 899999999999999865321 123445677999999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCcc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+.+.+++++.....+|+.+.+||++
T Consensus 223 ~~~~~l~~~~~~~~~G~~~~v~gg~ 247 (248)
T 2pnf_A 223 NVVLFLCSELASYITGEVIHVNGGM 247 (248)
T ss_dssp HHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HHHHHHhCchhhcCCCcEEEeCCCc
Confidence 9999999877778999999999986
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=276.41 Aligned_cols=238 Identities=19% Similarity=0.245 Sum_probs=192.2
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..+++ |++|||||++|||+++|++|+++|++ |++++|+.++++.+.+.+... .++.++++|++|+++++++++++.
T Consensus 17 ~~~~~-k~vlVTGas~gIG~aia~~La~~G~~--V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~ 92 (272)
T 2nwq_A 17 GSHMS-STLFITGATSGFGEACARRFAEAGWS--LVLTGRREERLQALAGELSAK-TRVLPLTLDVRDRAAMSAAVDNLP 92 (272)
T ss_dssp ----C-CEEEESSTTTSSHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHTTT-SCEEEEECCTTCHHHHHHHHHTCC
T ss_pred CCCcC-cEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHhhcC-CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 34566 99999999999999999999999987 999999987766554444332 578999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|+||||||... ...++.+.+.++|++.+++|+.+++++++.+.|.|.+++.| ++||++||..+
T Consensus 93 ~~~g~iD~lvnnAG~~~------~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g-----~~IV~isS~~~ 161 (272)
T 2nwq_A 93 EEFATLRGLINNAGLAL------GTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAG-----ASIVNLGSVAG 161 (272)
T ss_dssp GGGSSCCEEEECCCCCC------CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTT-----CEEEEECCGGG
T ss_pred HHhCCCCEEEECCCCCC------CCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----cEEEEeCCchh
Confidence 99999999999999863 12566778889999999999999999999999999875432 28999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-C-------CCCCCCCChHHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-N-------VPEGKLFTKEFSV 254 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-~-------~~~~~~~~~~~~a 254 (282)
..+ .++...|+++|++++.|+++++.|+++. +|++|+|+||+++|++...... . .......+|+++|
T Consensus 162 ~~~---~~~~~~Y~asKaa~~~l~~~la~el~~~--gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~pedvA 236 (272)
T 2nwq_A 162 KWP---YPGSHVYGGTKAFVEQFSLNLRCDLQGT--GVRVTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHPIQPEDIA 236 (272)
T ss_dssp TSC---CTTCHHHHHHHHHHHHHHHHHHTTCTTS--CCEEEEEEECSBC--------------------CCCCBCHHHHH
T ss_pred ccC---CCCCchHHHHHHHHHHHHHHHHHHhCcc--CeEEEEEEcCCCcCcchhcccccchHHHHHhhccCCCCCHHHHH
Confidence 766 5677899999999999999999999988 8999999999999998643111 0 1112246899999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
+.+++++++ ...++|+.+.++++..+
T Consensus 237 ~~v~~l~s~-~~~~~g~~i~v~~~~~~ 262 (272)
T 2nwq_A 237 ETIFWIMNQ-PAHLNINSLEIMPVSQS 262 (272)
T ss_dssp HHHHHHHTS-CTTEEEEEEEEEETTEE
T ss_pred HHHHHHhCC-CccCccceEEEeeccCc
Confidence 999999985 46789999988877544
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=269.31 Aligned_cols=235 Identities=23% Similarity=0.320 Sum_probs=202.0
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEe-ecCCCcccccccccccCCCceeE-EEeeCCChhHHHHHHHHHHHHc
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT-CRNPNGATGLLDLKNRFPERLDV-LQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~-~r~~~~~~~~~~~~~~~~~~v~~-~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
+|+++||||++|||++++++|+++|++ |+++ +|+.++.+...+.+...+.++.+ +.+|++|.++++++++++.+++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~--v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFA--LAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVL 78 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCE--EEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999999987 8777 88877666554444444567777 9999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
+++|++|||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|++++. ++||++||..+..+
T Consensus 79 ~~~d~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~------~~iv~~sS~~~~~~ 145 (245)
T 2ph3_A 79 GGLDTLVNNAGITR-------DTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARF------GRIVNITSVVGILG 145 (245)
T ss_dssp TCCCEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC------EEEEEECCTHHHHC
T ss_pred CCCCEEEECCCCCC-------CCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC------CEEEEEeChhhccC
Confidence 99999999999874 455677788999999999999999999999999987654 39999999887766
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHHHHHH
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFSVQKL 257 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~a~~~ 257 (282)
.++...|+++|++++.++++++.|+.+. +|++++++||++.|++.+... ...+.....+|+++|+.+
T Consensus 146 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~ 220 (245)
T 2ph3_A 146 ---NPGQANYVASKAGLIGFTRAVAKEYAQR--GITVNAVAPGFIETEMTERLPQEVKEAYLKQIPAGRFGRPEEVAEAV 220 (245)
T ss_dssp ---CSSBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCHHHHTSCHHHHHHHHHTCTTCSCBCHHHHHHHH
T ss_pred ---CCCCcchHHHHHHHHHHHHHHHHHHHHc--CeEEEEEEEEeecCcchhhcCHHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence 4567899999999999999999999988 899999999999998754321 123445677999999999
Q ss_pred HHHHhhcCCCCCCceeecCCcccCC
Q 023441 258 LNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 258 ~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
.+++++....++|+.+.+||++.||
T Consensus 221 ~~l~~~~~~~~~G~~~~v~gg~~~~ 245 (245)
T 2ph3_A 221 AFLVSEKAGYITGQTLCVDGGLTPH 245 (245)
T ss_dssp HHHTSGGGTTCCSCEEEESTTCSCC
T ss_pred HHHhCcccccccCCEEEECCCCCCC
Confidence 9999876678999999999999998
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=274.57 Aligned_cols=230 Identities=19% Similarity=0.270 Sum_probs=188.5
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
...++++||++|||||++|||+++|++|+++|++ |++++|+.++.+...+.+ +.++.++++|++|.+++++++++
T Consensus 9 ~~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~v~~~~~~ 83 (291)
T 3rd5_A 9 ADLPSFAQRTVVITGANSGLGAVTARELARRGAT--VIMAVRDTRKGEAAARTM---AGQVEVRELDLQDLSSVRRFADG 83 (291)
T ss_dssp GGCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHTTS---SSEEEEEECCTTCHHHHHHHHHT
T ss_pred hhccCCCCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHh---cCCeeEEEcCCCCHHHHHHHHHh
Confidence 3457889999999999999999999999999987 999999988766544433 56899999999999999998887
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+ +++|+||||||+.. +..+.+.++|++.+++|+.+++++++++.|.|.+ +||++||.
T Consensus 84 ~----~~iD~lv~nAg~~~---------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~----------riv~isS~ 140 (291)
T 3rd5_A 84 V----SGADVLINNAGIMA---------VPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD----------RVVTVSSM 140 (291)
T ss_dssp C----CCEEEEEECCCCCS---------CCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE----------EEEEECCG
T ss_pred c----CCCCEEEECCcCCC---------CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------heeEeech
Confidence 6 78999999999864 1234567889999999999999999999999874 89999999
Q ss_pred ccccCC----------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC-------CC
Q 023441 181 VGSIGD----------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN-------VP 243 (282)
Q Consensus 181 ~~~~~~----------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~-------~~ 243 (282)
.+..+. .+.++...|++||++++.|+++++.|+++.+++|++|+|+||+++|++.+..... .+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~ 220 (291)
T 3rd5_A 141 AHWPGRINLEDLNWRSRRYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKLGDALMSAA 220 (291)
T ss_dssp GGTTCCCCSSCTTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC----------------
T ss_pred hhccCCCCcccccccccCCCCcchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchHHHHHHHHHH
Confidence 877552 2245567899999999999999999999986679999999999999997754221 11
Q ss_pred CCCC-CChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 244 EGKL-FTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 244 ~~~~-~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.... .+|+++|+.+++++++ +.++|+++.+|||+.
T Consensus 221 ~~~~~~~~~~~A~~~~~l~~~--~~~~G~~~~vdgG~~ 256 (291)
T 3rd5_A 221 TRVVATDADFGARQTLYAASQ--DLPGDSFVGPRFGYL 256 (291)
T ss_dssp ----CHHHHHHHHHHHHHHHS--CCCTTCEEEETTSSS
T ss_pred HHHHhCCHHHHHHHHHHHHcC--CCCCCceeCCccccc
Confidence 1222 2499999999999987 489999999999865
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=270.22 Aligned_cols=222 Identities=15% Similarity=0.147 Sum_probs=191.0
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.+||++|||||++|||++++++|+++|++ |++++|+.++.+ ....++++|++|+++++++++++.+++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~----------~~~~~~~~D~~~~~~v~~~~~~~~~~~ 72 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNWW--VASIDVVENEEA----------SASVIVKMTDSFTEQADQVTAEVGKLL 72 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTCE--EEEEESSCCTTS----------SEEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCE--EEEEeCChhhcc----------CCcEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999987 999999876543 135678999999999999999999999
Q ss_pred --CCccEEEECcccCCCCCCCCCcccc-cccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 106 --GSLNLLINASGILSIPNVLQPETTL-NKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 106 --~~id~lv~~ag~~~~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+++|+||||||... ..+. .+.+.++|++.+++|+.+++.+++.+.|.|++. ++||++||..+
T Consensus 73 ~~g~iD~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--------g~iv~isS~~~ 137 (241)
T 1dhr_A 73 GDQKVDAILCVAGGWA-------GGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG--------GLLTLAGAKAA 137 (241)
T ss_dssp TTCCEEEEEECCCCCC-------CBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE--------EEEEEECCGGG
T ss_pred CCCCCCEEEEcccccC-------CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccC--------CEEEEECCHHH
Confidence 79999999999874 3444 567788999999999999999999999998652 39999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhc--cCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFG--RKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNI 260 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~--~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 260 (282)
..+ .++...|+++|++++.|+++++.|++ +. +|++|+|+||+++|++.+............+|+++|+.++++
T Consensus 138 ~~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~~~--gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~vA~~v~~l 212 (241)
T 1dhr_A 138 LDG---TPGMIGYGMAKGAVHQLCQSLAGKNSGMPS--GAAAIAVLPVTLDTPMNRKSMPEADFSSWTPLEFLVETFHDW 212 (241)
T ss_dssp GSC---CTTBHHHHHHHHHHHHHHHHHTSTTSSCCT--TCEEEEEEESCEECHHHHHHSTTSCGGGSEEHHHHHHHHHHH
T ss_pred ccC---CCCchHHHHHHHHHHHHHHHHHHHhccCCC--CeEEEEEecCcccCccccccCcchhhccCCCHHHHHHHHHHH
Confidence 766 56778999999999999999999998 66 899999999999999865432222223456899999999999
Q ss_pred HhhcCCCCCCceeecCCcc
Q 023441 261 INNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 261 ~~~~~~~~~g~~~~~d~~~ 279 (282)
+++....++|+++.+||+.
T Consensus 213 ~~~~~~~~~G~~~~v~g~~ 231 (241)
T 1dhr_A 213 ITGNKRPNSGSLIQVVTTD 231 (241)
T ss_dssp HTTTTCCCTTCEEEEEEET
T ss_pred hcCCCcCccceEEEEeCCC
Confidence 9988889999999998764
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-39 Score=267.77 Aligned_cols=225 Identities=16% Similarity=0.171 Sum_probs=181.0
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|++|||||++|||+++|++|+++|++ |++++|+.+++++..+.+ +.++.++.+|++|.++++++++++.+. .
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~---~ 73 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKA--TYLTGRSESKLSTVTNCL---SNNVGYRARDLASHQEVEQLFEQLDSI---P 73 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCC--EEEEESCHHHHHHHHHTC---SSCCCEEECCTTCHHHHHHHHHSCSSC---C
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHH---hhccCeEeecCCCHHHHHHHHHHHhhc---C
Confidence 68999999999999999999999998 999999988776554443 568999999999999999998876543 4
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|.+++. +||++||..+..+
T Consensus 74 d~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-------~iv~isS~~~~~~--- 136 (230)
T 3guy_A 74 STVVHSAGSGY-------FGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPV-------NVVMIMSTAAQQP--- 136 (230)
T ss_dssp SEEEECCCCCC-------CSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC-------EEEEECCGGGTSC---
T ss_pred CEEEEeCCcCC-------CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------eEEEEeecccCCC---
Confidence 99999999875 566778889999999999999999999999999987642 8999999988776
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHh-hcCCC
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIIN-NIKSH 267 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~ 267 (282)
.++...|++||++++.|+++++.|++++ +|+||+|+||+++|++.+......+.....+|+++|+.++++++ +....
T Consensus 137 ~~~~~~Y~asKaa~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~dvA~~i~~l~~~~~~~~ 214 (230)
T 3guy_A 137 KAQESTYCAVKWAVKGLIESVRLELKGK--PMKIIAVYPGGMATEFWETSGKSLDTSSFMSAEDAALMIHGALANIGNGY 214 (230)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTTTS--SCEEEEEEECCC----------------CCCHHHHHHHHHHHCCEETTEE
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhc--CeEEEEEECCcccChHHHhcCCCCCcccCCCHHHHHHHHHHHHhCcCCCC
Confidence 6777899999999999999999999988 89999999999999998877766777788899999999999987 44578
Q ss_pred CCCceeecCCccc
Q 023441 268 DNGKFFAWDGQEI 280 (282)
Q Consensus 268 ~~g~~~~~d~~~~ 280 (282)
++|+.+..+....
T Consensus 215 itg~~~~~~~~~~ 227 (230)
T 3guy_A 215 VSDITVNREGHHH 227 (230)
T ss_dssp EEEEEEEC-----
T ss_pred ccceeecCCCCCC
Confidence 9999998776543
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-39 Score=271.90 Aligned_cols=227 Identities=14% Similarity=0.120 Sum_probs=193.1
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|++|||||++|||++++++|+++|++ |++++|+.++.+...+ +...+.++.++ |.++++++++++.++++++
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~-l~~~~~~~~~~-----d~~~v~~~~~~~~~~~g~i 73 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHT--VACHDESFKQKDELEA-FAETYPQLKPM-----SEQEPAELIEAVTSAYGQV 73 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCE--EEECCGGGGSHHHHHH-HHHHCTTSEEC-----CCCSHHHHHHHHHHHHSCC
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHH-HHhcCCcEEEE-----CHHHHHHHHHHHHHHhCCC
Confidence 68999999999999999999999987 9999999877665444 33334455544 7788999999999999999
Q ss_pred cEEEECcccC-CCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 109 NLLINASGIL-SIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 109 d~lv~~ag~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
|+||||||.. . ..+..+.+.++|++.+++|+.+++.+++.+.|.|.+++.| +||++||..+..+
T Consensus 74 D~lv~nAg~~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g------~iv~isS~~~~~~-- 138 (254)
T 1zmt_A 74 DVLVSNDIFAPE-------FQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSG------HIIFITSATPFGP-- 138 (254)
T ss_dssp CEEEEECCCCCC-------CCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC------EEEEECCSTTTSC--
T ss_pred CEEEECCCcCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc------EEEEECCcccccC--
Confidence 9999999986 3 4566778889999999999999999999999999876654 9999999988766
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccc---------cCCCCccc-------ccCCCCCCCCChH
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTV---------DTDLSRPF-------QRNVPEGKLFTKE 251 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v---------~t~~~~~~-------~~~~~~~~~~~~~ 251 (282)
.+....|++||++++.|+++++.|++++ +|+||+|+||++ +|++.... ....+..+..+|+
T Consensus 139 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~p~~~~~~p~ 215 (254)
T 1zmt_A 139 -WKELSTYTSARAGACTLANALSKELGEY--NIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQK 215 (254)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSSSCBCHH
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHhhhc--CcEEEEEecCccccccccccCCCcccccChHHHHHHhccCCCCCCcCHH
Confidence 5677899999999999999999999988 899999999999 77764321 1123455678999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
++|+.+++++++....++|+.+.+||++..
T Consensus 216 dvA~~v~~l~s~~~~~~tG~~~~vdgG~~~ 245 (254)
T 1zmt_A 216 ELGELVAFLASGSCDYLTGQVFWLAGGFPM 245 (254)
T ss_dssp HHHHHHHHHHTTSCGGGTTCEEEESTTCCC
T ss_pred HHHHHHHHHhCcccCCccCCEEEECCCchh
Confidence 999999999998888999999999999753
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=268.65 Aligned_cols=225 Identities=19% Similarity=0.162 Sum_probs=193.5
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
...+.+||++|||||++|||+++|++|+++|++ |++++|+.++.+. ..+.+|++|.++++++++++
T Consensus 16 ~~~~~m~k~vlITGas~gIG~~la~~l~~~G~~--V~~~~r~~~~~~~------------~~~~~d~~d~~~v~~~~~~~ 81 (251)
T 3orf_A 16 PRGSHMSKNILVLGGSGALGAEVVKFFKSKSWN--TISIDFRENPNAD------------HSFTIKDSGEEEIKSVIEKI 81 (251)
T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSCCTTSS------------EEEECSCSSHHHHHHHHHHH
T ss_pred ccccccCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCcccccc------------cceEEEeCCHHHHHHHHHHH
Confidence 445567899999999999999999999999988 9999999876432 35789999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++++++|+||||||... ......+.+.++|++.+++|+.+++.+++++.|.|+++ ++||++||..
T Consensus 82 ~~~~g~iD~li~~Ag~~~------~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--------g~iv~isS~~ 147 (251)
T 3orf_A 82 NSKSIKVDTFVCAAGGWS------GGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQG--------GLFVLTGASA 147 (251)
T ss_dssp HTTTCCEEEEEECCCCCC------CBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE--------EEEEEECCGG
T ss_pred HHHcCCCCEEEECCccCC------CCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccC--------CEEEEEechh
Confidence 999999999999999875 12235567788999999999999999999999998652 3999999999
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhc--cCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFG--RKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLN 259 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~--~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~ 259 (282)
+..+ .++...|+++|++++.|+++++.|++ +. +|++++|+||+++|++.+......+.....+|+++|+.+++
T Consensus 148 ~~~~---~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~dva~~i~~ 222 (251)
T 3orf_A 148 ALNR---TSGMIAYGATKAATHHIIKDLASENGGLPA--GSTSLGILPVTLDTPTNRKYMSDANFDDWTPLSEVAEKLFE 222 (251)
T ss_dssp GGSC---CTTBHHHHHHHHHHHHHHHHHTSTTSSSCT--TCEEEEEEESCBCCHHHHHHCTTSCGGGSBCHHHHHHHHHH
T ss_pred hccC---CCCCchhHHHHHHHHHHHHHHHHHhcccCC--CcEEEEEecCcCcCcchhhhcccccccccCCHHHHHHHHHH
Confidence 8876 67788999999999999999999987 65 89999999999999998776666667778899999999999
Q ss_pred HHhh-cCCCCCCceeecCCcc
Q 023441 260 IINN-IKSHDNGKFFAWDGQE 279 (282)
Q Consensus 260 ~~~~-~~~~~~g~~~~~d~~~ 279 (282)
++++ ....++|+.+.+++++
T Consensus 223 l~~~~~~~~~tG~~i~v~~g~ 243 (251)
T 3orf_A 223 WSTNSDSRPTNGSLVKFETKS 243 (251)
T ss_dssp HHHCGGGCCCTTCEEEEEEET
T ss_pred HhcCccccCCcceEEEEecCC
Confidence 9998 7789999999986543
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-38 Score=266.58 Aligned_cols=238 Identities=20% Similarity=0.294 Sum_probs=203.3
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..++++||++|||||++|||++++++|+++|++ |++++|+.+..+...+.+...+.++.++.+|++|+++++++++++
T Consensus 5 ~~~~~~~~~vlVtGasggiG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (255)
T 1fmc_A 5 DNLRLDGKCAIITGAGAGIGKEIAITFATAGAS--VVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFA 82 (255)
T ss_dssp GGGCCTTCEEEETTTTSHHHHHHHHHHHTTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECCccHHHHHHHHHHHHCCCE--EEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHH
Confidence 356789999999999999999999999999987 999999987766555555555668999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++++++|+||||||... ..+. +.+.++|++.+++|+.+++++++.+.|.|.+++. ++||++||..
T Consensus 83 ~~~~~~~d~vi~~Ag~~~-------~~~~-~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~------~~iv~~sS~~ 148 (255)
T 1fmc_A 83 ISKLGKVDILVNNAGGGG-------PKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGG------GVILTITSMA 148 (255)
T ss_dssp HHHHSSCCEEEECCCCCC-------CCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC------EEEEEECCGG
T ss_pred HHhcCCCCEEEECCCCCC-------CCCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC------cEEEEEcchh
Confidence 999999999999999874 2233 5677899999999999999999999999977554 3999999988
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCChHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFTKEF 252 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~~~~ 252 (282)
+..+ .++...|+++|++++.+++.++.|+++. +|++++++||++.|++.+.. ....+...+.+|++
T Consensus 149 ~~~~---~~~~~~Y~~sK~a~~~~~~~~~~~~~~~--~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 223 (255)
T 1fmc_A 149 AENK---NINMTSYASSKAAASHLVRNMAFDLGEK--NIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQD 223 (255)
T ss_dssp GTCC---CTTCHHHHHHHHHHHHHHHHHHHHHHTT--TEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCSSCSCBCHHH
T ss_pred hcCC---CCCCcccHHHHHHHHHHHHHHHHHhhhc--CcEEEEEecccCcchhhhhccChHHHHHHHhcCCcccCCCHHH
Confidence 7765 5567899999999999999999999887 89999999999999864321 12345566779999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+.+++++++....++|+.+.+++++.
T Consensus 224 va~~~~~l~~~~~~~~~G~~~~v~gg~~ 251 (255)
T 1fmc_A 224 IANAALFLCSPAASWVSGQILTVSGGGV 251 (255)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred HHHHHHHHhCCccccCCCcEEEECCcee
Confidence 9999999998777788999999998764
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=268.25 Aligned_cols=233 Identities=23% Similarity=0.317 Sum_probs=198.7
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEE-eecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIA-TCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~-~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
||++|||||++|||++++++|+++|++ |++ .+|+.+..+.+.+.+...+.++.++++|++|+++++++++++.++++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~--v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCK--VLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWG 78 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 689999999999999999999999987 777 57887666555444444456899999999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++|||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|.+++. ++||++||..+..+
T Consensus 79 ~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~------~~iv~~sS~~~~~~- 144 (244)
T 1edo_A 79 TIDVVVNNAGITR-------DTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK------GRIINIASVVGLIG- 144 (244)
T ss_dssp CCSEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC------EEEEEECCTHHHHC-
T ss_pred CCCEEEECCCCCC-------CcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC------CEEEEECChhhcCC-
Confidence 9999999999875 455667788999999999999999999999999987554 39999999987766
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHHHHHHH
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFSVQKLL 258 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~a~~~~ 258 (282)
.++...|+++|++++.++++++.|+++. +|++++++||++.|++..... ...+.....+|+++|+.+.
T Consensus 145 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~ 220 (244)
T 1edo_A 145 --NIGQANYAAAKAGVIGFSKTAAREGASR--NINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRTGQPENVAGLVE 220 (244)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHTT--TEEEEEEEECSBCSHHHHTTCHHHHHHHHTSCTTCSCBCHHHHHHHHH
T ss_pred --CCCCccchhhHHHHHHHHHHHHHHhhhc--CCEEEEEeeCccccchhhhcChHHHHHHhhcCCCCCCCCHHHHHHHHH
Confidence 5667899999999999999999999887 899999999999998754321 2334556779999999999
Q ss_pred HHH-hhcCCCCCCceeecCCccc
Q 023441 259 NII-NNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 259 ~~~-~~~~~~~~g~~~~~d~~~~ 280 (282)
+++ ++....++|+.+.+||++.
T Consensus 221 ~l~~~~~~~~~~G~~~~v~gG~~ 243 (244)
T 1edo_A 221 FLALSPAASYITGQAFTIDGGIA 243 (244)
T ss_dssp HHHHCSGGGGCCSCEEEESTTTT
T ss_pred HHhCCCccCCcCCCEEEeCCCcc
Confidence 998 4456789999999999864
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-38 Score=286.76 Aligned_cols=235 Identities=20% Similarity=0.272 Sum_probs=197.8
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..+++||++|||||++|||+++|++|+++|++ |++++|+.... .+.+...+. .+.+++||++|.++++++++++.
T Consensus 208 ~~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~--Vvl~~r~~~~~-~l~~~~~~~--~~~~~~~Dvtd~~~v~~~~~~~~ 282 (454)
T 3u0b_A 208 DKPLDGKVAVVTGAARGIGATIAEVFARDGAT--VVAIDVDGAAE-DLKRVADKV--GGTALTLDVTADDAVDKITAHVT 282 (454)
T ss_dssp TSTTTTCEEEESSCSSHHHHHHHHHHHHTTCE--EEEEECGGGHH-HHHHHHHHH--TCEEEECCTTSTTHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCchHHHHHHHHHHHHCCCE--EEEEeCCccHH-HHHHHHHHc--CCeEEEEecCCHHHHHHHHHHHH
Confidence 35578999999999999999999999999987 88888865321 222222221 45789999999999999999999
Q ss_pred HHcCC-ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 103 EKYGS-LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 103 ~~~~~-id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
+++++ ||+||||||+.. ...+.+.+.++|++.+++|+.+++++++.+.+.|..++.+ +||++||..
T Consensus 283 ~~~g~~id~lV~nAGv~~-------~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g------~iV~iSS~a 349 (454)
T 3u0b_A 283 EHHGGKVDILVNNAGITR-------DKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGG------RVIGLSSMA 349 (454)
T ss_dssp HHSTTCCSEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTC------EEEEECCHH
T ss_pred HHcCCCceEEEECCcccC-------CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC------EEEEEeChH
Confidence 99976 999999999985 5677888999999999999999999999999998876655 999999999
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------CCCCCCCCChHHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------NVPEGKLFTKEFS 253 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~~~~~~~~~~~~~ 253 (282)
+..+ .++...|+++|+++++|+++++.|++++ +|++|+|+||+++|++.+.... ..+..+..+|+++
T Consensus 350 ~~~g---~~g~~~YaasKaal~~l~~~la~e~~~~--gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~l~r~g~pedv 424 (454)
T 3u0b_A 350 GIAG---NRGQTNYATTKAGMIGLAEALAPVLADK--GITINAVAPGFIETKMTEAIPLATREVGRRLNSLFQGGQPVDV 424 (454)
T ss_dssp HHHC---CTTCHHHHHHHHHHHHHHHHHHHHHHTT--TCEEEEEEECSBCC----------CHHHHHSBTTSSCBCHHHH
T ss_pred hCCC---CCCCHHHHHHHHHHHHHHHHHHHHhhhc--CcEEEEEEcCcccChhhhhcchhhHHHHHhhccccCCCCHHHH
Confidence 8877 6778899999999999999999999988 8999999999999998764322 1234456699999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+.+.+++++...++||+.+.+||+.+
T Consensus 425 A~~v~fL~s~~a~~itG~~i~vdGG~~ 451 (454)
T 3u0b_A 425 AELIAYFASPASNAVTGNTIRVCGQAM 451 (454)
T ss_dssp HHHHHHHHCGGGTTCCSCEEEESSSBS
T ss_pred HHHHHHHhCCccCCCCCcEEEECCccc
Confidence 999999999988999999999999875
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=271.58 Aligned_cols=243 Identities=16% Similarity=0.243 Sum_probs=202.7
Q ss_pred ccccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC-CCceeEEEeeCCChhHHHH
Q 023441 18 SSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-PERLDVLQLDLTVESTIEA 96 (282)
Q Consensus 18 ~~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~-~~~v~~~~~Dls~~~~~~~ 96 (282)
.+....++++||++|||||++|||++++++|+++|++ |++++|+.+..+...+.+... +.++.++++|++|.+++++
T Consensus 16 ~~~~~~~~l~~k~vlITGasggiG~~la~~L~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~ 93 (302)
T 1w6u_A 16 KAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQ--CVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQN 93 (302)
T ss_dssp SCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHH
T ss_pred CCCCCcccCCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHH
Confidence 3445667899999999999999999999999999987 999999987666544433322 5689999999999999999
Q ss_pred HHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEE
Q 023441 97 SAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVAN 176 (282)
Q Consensus 97 ~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~ 176 (282)
+++.+.+.++++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.+.+.++..+ ++||+
T Consensus 94 ~~~~~~~~~g~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-----~~iv~ 161 (302)
T 1w6u_A 94 TVSELIKVAGHPNIVINNAAGNF-------ISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKG-----AAFLS 161 (302)
T ss_dssp HHHHHHHHTCSCSEEEECCCCCC-------CSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----EEEEE
T ss_pred HHHHHHHHcCCCCEEEECCCCCC-------CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-----CEEEE
Confidence 99999999999999999999864 4556677889999999999999999999999999743221 49999
Q ss_pred eeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC-CCcccc----------cCCCCC
Q 023441 177 LSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD-LSRPFQ----------RNVPEG 245 (282)
Q Consensus 177 ~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~-~~~~~~----------~~~~~~ 245 (282)
+||..+..+ .+....|+++|++++.++++++.++++. +|++++++||++.|+ +..... ...+..
T Consensus 162 isS~~~~~~---~~~~~~Y~~sK~a~~~~~~~la~~~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p~~ 236 (302)
T 1w6u_A 162 ITTIYAETG---SGFVVPSASAKAGVEAMSKSLAAEWGKY--GMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCG 236 (302)
T ss_dssp ECCTHHHHC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTS
T ss_pred EcccccccC---CCCcchhHHHHHHHHHHHHHHHHHhhhc--CcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCCcC
Confidence 999988766 5667899999999999999999999988 899999999999987 433221 123445
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
...+|+++|+.+.+++++....++|+.+.+||++
T Consensus 237 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 270 (302)
T 1w6u_A 237 RLGTVEELANLAAFLCSDYASWINGAVIKFDGGE 270 (302)
T ss_dssp SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred CCCCHHHHHHHHHHHcCCcccccCCCEEEECCCe
Confidence 6679999999999999877788999999999885
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-38 Score=274.77 Aligned_cols=223 Identities=16% Similarity=0.211 Sum_probs=185.9
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCC--ceeEEEeeCCChhHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE--RLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~--~v~~~~~Dls~~~~~~~~~~~ 100 (282)
.++++||++|||||++|||+++|++|+++|++ |++++|+.+++++..+.+...+. ++.++.+|++|.++++++++.
T Consensus 3 m~~l~~k~vlVTGas~gIG~~la~~l~~~G~~--Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 80 (319)
T 3ioy_A 3 LKDFAGRTAFVTGGANGVGIGLVRQLLNQGCK--VAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADE 80 (319)
T ss_dssp CCCCTTCEEEEETTTSTHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCCCEEEEcCCchHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 35688999999999999999999999999987 99999999887765555443333 899999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcC------CCCCccceeEE
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVG------GTGIERDVAVV 174 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~------~~g~~~~~~~i 174 (282)
+.+.++++|+||||||+.. ..++.+.+.++|++.+++|+.|++++++.+.|.|.++ +. ++|
T Consensus 81 ~~~~~g~id~lv~nAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~------g~i 147 (319)
T 3ioy_A 81 VEARFGPVSILCNNAGVNL-------FQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKG------GHV 147 (319)
T ss_dssp HHHHTCCEEEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCC------CEE
T ss_pred HHHhCCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCC------cEE
Confidence 9999999999999999875 5677788899999999999999999999999998764 33 399
Q ss_pred EEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCC-----------
Q 023441 175 ANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVP----------- 243 (282)
Q Consensus 175 v~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~----------- 243 (282)
|++||..+..+ .++...|++||+++++|+++++.|+.+. +|++++|+||+|+|++.........
T Consensus 148 V~isS~a~~~~---~~~~~~Y~aSKaal~~~~~~la~e~~~~--gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 222 (319)
T 3ioy_A 148 VNTASMAAFLA---AGSPGIYNTTKFAVRGLSESLHYSLLKY--EIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDK 222 (319)
T ss_dssp EEECCGGGTCC---CSSSHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEECCCCBC-----------------------
T ss_pred EEecccccccC---CCCCHHHHHHHHHHHHHHHHHHHHhhhc--CCEEEEEEcCeEccCcccccccCchhhcccccchhH
Confidence 99999998877 6677899999999999999999999988 8999999999999998763211100
Q ss_pred ---------CCCCCChHHHHHHHHHHHhhcC
Q 023441 244 ---------EGKLFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 244 ---------~~~~~~~~~~a~~~~~~~~~~~ 265 (282)
.....+|+++|+.++..+....
T Consensus 223 ~~~~~~~~~~~~~~~pe~vA~~~~~al~~~~ 253 (319)
T 3ioy_A 223 TAVERLAGVHEFGMEPDVIGARVIEAMKANR 253 (319)
T ss_dssp ------CCGGGSSBCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHcCC
Confidence 0112699999999999998653
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=299.20 Aligned_cols=230 Identities=24% Similarity=0.332 Sum_probs=191.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||++|||||++|||+++|++|+++|++ |++.+|. ..++..+.+.+.+.++..+.+|++ ++.+++++++.+
T Consensus 318 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga~--Vv~~~~~--~~~~~~~~i~~~g~~~~~~~~Dv~--~~~~~~~~~~~~ 391 (604)
T 2et6_A 318 VSLKDKVVLITGAGAGLGKEYAKWFAKYGAK--VVVNDFK--DATKTVDEIKAAGGEAWPDQHDVA--KDSEAIIKNVID 391 (604)
T ss_dssp CCCTTCEEEESSCSSHHHHHHHHHHHHTTCE--EEEECSS--CCHHHHHHHHHTTCEEEEECCCHH--HHHHHHHHHHHH
T ss_pred cccCCCeEEEECcchHHHHHHHHHHHHCCCE--EEEEeCc--cHHHHHHHHHhcCCeEEEEEcChH--HHHHHHHHHHHH
Confidence 4789999999999999999999999999998 8888763 233344444444567788888884 456788999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+||+||+||||||+.. ..++.+.+.++|++.+++|+.|++.+++++.|.|++++.| +||++||..+.
T Consensus 392 ~~G~iDiLVnNAGi~~-------~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G------~IVnisS~ag~ 458 (604)
T 2et6_A 392 KYGTIDILVNNAGILR-------DRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFG------RIINITSTSGI 458 (604)
T ss_dssp HHSCCCEEEECCCCCC-------CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE------EEEEECCHHHH
T ss_pred hcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC------EEEEECChhhc
Confidence 9999999999999875 4567788899999999999999999999999999887654 99999999988
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhh
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
.+ .++...|++||+++.+|+++|+.|++++ +|+||+|+||. .|+|.+..... ......+|+++|+.+.+++++
T Consensus 459 ~~---~~~~~~Y~asKaal~~lt~~la~El~~~--gIrVn~v~PG~-~T~m~~~~~~~-~~~~~~~pe~vA~~v~~L~s~ 531 (604)
T 2et6_A 459 YG---NFGQANYSSSKAGILGLSKTMAIEGAKN--NIKVNIVAPHA-ETAMTLSIMRE-QDKNLYHADQVAPLLVYLGTD 531 (604)
T ss_dssp SC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECC-CCCC----------CCSSCGGGTHHHHHHTTST
T ss_pred cC---CCCChhHHHHHHHHHHHHHHHHHHhCcc--CeEEEEEcCCC-CCccccccCch-hhccCCCHHHHHHHHHHHhCC
Confidence 77 5677899999999999999999999998 89999999996 99986643221 123346899999999999988
Q ss_pred cCCCCCCceeecCCccc
Q 023441 264 IKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 264 ~~~~~~g~~~~~d~~~~ 280 (282)
... ++|+.+.+||++.
T Consensus 532 ~~~-itG~~~~vdGG~~ 547 (604)
T 2et6_A 532 DVP-VTGETFEIGGGWI 547 (604)
T ss_dssp TCC-CCSCEEEEETTEE
T ss_pred ccC-CCCcEEEECCCee
Confidence 777 9999999999864
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=266.35 Aligned_cols=222 Identities=14% Similarity=0.140 Sum_probs=189.3
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++||++|||||++|||++++++|+++|++ |++++|+.++.+ ....++++|++|.++++++++++.+++
T Consensus 1 m~~k~vlITGas~gIG~~~a~~l~~~G~~--V~~~~r~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 68 (236)
T 1ooe_A 1 MSSGKVIVYGGKGALGSAILEFFKKNGYT--VLNIDLSANDQA----------DSNILVDGNKNWTEQEQSILEQTASSL 68 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHTTEE--EEEEESSCCTTS----------SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEecCccccc----------cccEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999987 999999886643 135678999999999999999999999
Q ss_pred --CCccEEEECcccCCCCCCCCCcccc-cccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 106 --GSLNLLINASGILSIPNVLQPETTL-NKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 106 --~~id~lv~~ag~~~~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+++|+||||||... ..+. .+.+.++|++.+++|+.+++.+++.+.|.|.+. ++||++||..+
T Consensus 69 ~~g~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--------g~iv~isS~~~ 133 (236)
T 1ooe_A 69 QGSQVDGVFCVAGGWA-------GGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG--------GLLQLTGAAAA 133 (236)
T ss_dssp TTCCEEEEEECCCCCC-------CBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE--------EEEEEECCGGG
T ss_pred CCCCCCEEEECCcccC-------CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccC--------CEEEEECchhh
Confidence 79999999999874 3344 566788999999999999999999999998652 39999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhc--cCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFG--RKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNI 260 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~--~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 260 (282)
..+ .++...|+++|++++.|+++++.|++ +. +|++++|+||+++|++.+............+|+++|+.++++
T Consensus 134 ~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~dvA~~i~~~ 208 (236)
T 1ooe_A 134 MGP---TPSMIGYGMAKAAVHHLTSSLAAKDSGLPD--NSAVLTIMPVTLDTPMNRKWMPNADHSSWTPLSFISEHLLKW 208 (236)
T ss_dssp GSC---CTTBHHHHHHHHHHHHHHHHHHSTTSSCCT--TCEEEEEEESCBCCHHHHHHSTTCCGGGCBCHHHHHHHHHHH
T ss_pred ccC---CCCcHHHHHHHHHHHHHHHHHHHHhcccCC--CeEEEEEecCcccCcchhhcCCCccccccCCHHHHHHHHHHH
Confidence 766 56778999999999999999999998 66 899999999999999865433222233456899999999866
Q ss_pred H-hhcCCCCCCceeecCCcc
Q 023441 261 I-NNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 261 ~-~~~~~~~~g~~~~~d~~~ 279 (282)
+ ++....++|+++.+||+.
T Consensus 209 l~s~~~~~~~G~~~~v~gg~ 228 (236)
T 1ooe_A 209 TTETSSRPSSGALLKITTEN 228 (236)
T ss_dssp HHCGGGCCCTTCEEEEEEET
T ss_pred HcCCCcccccccEEEEecCC
Confidence 6 666789999999998874
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-38 Score=268.51 Aligned_cols=242 Identities=20% Similarity=0.260 Sum_probs=201.7
Q ss_pred hccccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec-CCCcccccccccccCCCceeEEEeeCCChhHHH
Q 023441 17 TSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-NPNGATGLLDLKNRFPERLDVLQLDLTVESTIE 95 (282)
Q Consensus 17 ~~~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r-~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~ 95 (282)
..+....++++||++|||||++|||++++++|+++|++ |++.+| +.+..+...+.+...+.++.++++|++|+++++
T Consensus 10 ~~~~~~~~~~~~k~vlItGasggiG~~la~~l~~~G~~--v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~ 87 (274)
T 1ja9_A 10 SGPSDASKPLAGKVALTTGAGRGIGRGIAIELGRRGAS--VVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVV 87 (274)
T ss_dssp ------CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHH
T ss_pred cCCCCCCCCCCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHH
Confidence 44555668899999999999999999999999999987 888998 655555554545445678999999999999999
Q ss_pred HHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEE
Q 023441 96 ASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVA 175 (282)
Q Consensus 96 ~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv 175 (282)
++++++.+.++++|++|||||... ..+..+.+.++|++.+++|+.+++++++.+.+.+.+ + ++||
T Consensus 88 ~~~~~~~~~~~~~d~vi~~Ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~-------~~iv 152 (274)
T 1ja9_A 88 ALFDKAVSHFGGLDFVMSNSGMEV-------WCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRR-G-------GRII 152 (274)
T ss_dssp HHHHHHHHHHSCEEEEECCCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEE-E-------EEEE
T ss_pred HHHHHHHHHcCCCCEEEECCCCCC-------CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-C-------CEEE
Confidence 999999999999999999999874 455667788999999999999999999999998873 2 3999
Q ss_pred Eeeccccc-cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc------------cc---
Q 023441 176 NLSARVGS-IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------------FQ--- 239 (282)
Q Consensus 176 ~~ss~~~~-~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~------------~~--- 239 (282)
++||..+. .+ .++...|+++|++++.+++.++.|++.. +|++++++||++.|++... ..
T Consensus 153 ~~sS~~~~~~~---~~~~~~Y~~sK~a~~~~~~~~~~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~ 227 (274)
T 1ja9_A 153 LTSSIAAVMTG---IPNHALYAGSKAAVEGFCRAFAVDCGAK--GVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEK 227 (274)
T ss_dssp EECCGGGTCCS---CCSCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHH
T ss_pred EEcChHhccCC---CCCCchHHHHHHHHHHHHHHHHHHhhhc--CeEEEEEeeCcccccchhcccccccccccccCchHH
Confidence 99998876 44 4667889999999999999999999988 8999999999999987541 11
Q ss_pred ------cCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 240 ------RNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 240 ------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
...+.....+|+++|+.+.+++++....++|+.+.++||++
T Consensus 228 ~~~~~~~~~~~~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG~~ 274 (274)
T 1ja9_A 228 IDEGLANMNPLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGGGI 274 (274)
T ss_dssp HHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCC
T ss_pred HHHHHHhcCCCCCccCHHHHHHHHHHHhCcccccccCcEEEecCCcC
Confidence 12234567799999999999998777788999999999874
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=269.73 Aligned_cols=239 Identities=19% Similarity=0.247 Sum_probs=200.1
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc-----CCCceeEEEeeCCChhHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR-----FPERLDVLQLDLTVESTIE 95 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~-----~~~~v~~~~~Dls~~~~~~ 95 (282)
....+++||++|||||++|||++++++|+++|++ |++++|+.+..+...+.+.. .+.++.++++|++|.++++
T Consensus 11 ~~~~~l~~k~vlVTGasggIG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~ 88 (303)
T 1yxm_A 11 LAPGLLQGQVAIVTGGATGIGKAIVKELLELGSN--VVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVN 88 (303)
T ss_dssp BCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred cCcCCCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHH
Confidence 4455789999999999999999999999999987 99999998766554443322 3568999999999999999
Q ss_pred HHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEE
Q 023441 96 ASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVA 175 (282)
Q Consensus 96 ~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv 175 (282)
++++.+.+.++++|+||||||... ..+..+.+.++|++.+++|+.+++++++++.|.+.+++. ++||
T Consensus 89 ~~~~~~~~~~g~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~------~~iv 155 (303)
T 1yxm_A 89 NLVKSTLDTFGKINFLVNNGGGQF-------LSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG------GSIV 155 (303)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC------EEEE
T ss_pred HHHHHHHHHcCCCCEEEECCCCCC-------CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC------CeEE
Confidence 999999999999999999999764 455667788999999999999999999999996544322 4899
Q ss_pred EeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCC-ccc-----------ccCCC
Q 023441 176 NLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS-RPF-----------QRNVP 243 (282)
Q Consensus 176 ~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~-~~~-----------~~~~~ 243 (282)
++||.. ..+ .+....|+++|+++..++++++.|+++. +|++++|+||++.|++. ... ....+
T Consensus 156 ~isS~~-~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~p 229 (303)
T 1yxm_A 156 NIIVPT-KAG---FPLAVHSGAARAGVYNLTKSLALEWACS--GIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIP 229 (303)
T ss_dssp EECCCC-TTC---CTTCHHHHHHHHHHHHHHHHHHHHTGGG--TEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGST
T ss_pred EEEeec-ccC---CCcchhhHHHHHHHHHHHHHHHHHhccc--CeEEEEEecCCcccchhhhhccccchHHHHHHHhcCc
Confidence 999987 444 5667899999999999999999999988 89999999999999942 111 11234
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 244 EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.....+|+++|+.+++++++....++|+.+.+||++.
T Consensus 230 ~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG~~ 266 (303)
T 1yxm_A 230 AKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRS 266 (303)
T ss_dssp TSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ccCCCCHHHHHHHHHHHhCcccccCCCcEEEECCCee
Confidence 4567799999999999998877899999999999863
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=301.03 Aligned_cols=232 Identities=19% Similarity=0.254 Sum_probs=194.1
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC---------CcccccccccccCCCceeEEEeeCCChhH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP---------NGATGLLDLKNRFPERLDVLQLDLTVEST 93 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~---------~~~~~~~~~~~~~~~~v~~~~~Dls~~~~ 93 (282)
.++++||++|||||++|||+++|++|+++|++ |++.+|+. +.++.+.+.+...+.++ .+|++|.++
T Consensus 3 ~~~l~gkvalVTGas~GIG~a~A~~la~~Ga~--Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~---~~d~~d~~~ 77 (604)
T 2et6_A 3 PVDFKDKVVIITGAGGGLGKYYSLEFAKLGAK--VVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVA---VADYNNVLD 77 (604)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEECC-----------CHHHHHHHHHHHTTCEE---EEECCCTTC
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCE--EEEEeCCccccccccchHHHHHHHHHHHhcCCeE---EEEcCCHHH
Confidence 35789999999999999999999999999998 88888765 44444444444334433 369999999
Q ss_pred HHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeE
Q 023441 94 IEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAV 173 (282)
Q Consensus 94 ~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~ 173 (282)
++++++++.++||+||+||||||+.. ..++.+.+.++|++.+++|+.|++.+++++.|+|++++.| +
T Consensus 78 ~~~~v~~~~~~~G~iDiLVnNAGi~~-------~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G------~ 144 (604)
T 2et6_A 78 GDKIVETAVKNFGTVHVIINNAGILR-------DASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYG------R 144 (604)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCC-------CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------E
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC------E
Confidence 99999999999999999999999875 4567788899999999999999999999999999887654 9
Q ss_pred EEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHH
Q 023441 174 VANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFS 253 (282)
Q Consensus 174 iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~ 253 (282)
||++||..+..+ .++...|++||+++.+|+++|+.|++++ +|+||+|+|| +.|+|.+..... ......+|+++
T Consensus 145 IVnisS~ag~~~---~~~~~~Y~asKaal~~lt~~la~El~~~--gIrVn~v~Pg-~~T~m~~~~~~~-~~~~~~~pe~v 217 (604)
T 2et6_A 145 IVNTSSPAGLYG---NFGQANYASAKSALLGFAETLAKEGAKY--NIKANAIAPL-ARSRMTESIMPP-PMLEKLGPEKV 217 (604)
T ss_dssp EEEECCHHHHHC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEEC-CCCHHHHTTSCH-HHHTTCSHHHH
T ss_pred EEEECCHHHcCC---CCCchHHHHHHHHHHHHHHHHHHHhCcc--CeEEEEEccC-CcCccccccCCh-hhhccCCHHHH
Confidence 999999998877 5677899999999999999999999998 8999999998 688775432110 01123589999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|..+.+++++. ..++|+.+.+||+++
T Consensus 218 A~~v~~L~s~~-~~itG~~~~vdgG~~ 243 (604)
T 2et6_A 218 APLVLYLSSAE-NELTGQFFEVAAGFY 243 (604)
T ss_dssp HHHHHHHTSSS-CCCCSCEEEEETTEE
T ss_pred HHHHHHHhCCc-ccCCCCEEEECCCeE
Confidence 99999999987 899999999999863
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=258.42 Aligned_cols=228 Identities=23% Similarity=0.269 Sum_probs=184.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+.++|++|||||++|||++++++|+++|++ |++.+|+.++.+.+.+.+ .++.++.+|++|.++++++++.+.+
T Consensus 1 M~~~~k~vlVtGasggiG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (234)
T 2ehd_A 1 MEGMKGAVLITGASRGIGEATARLLHAKGYR--VGLMARDEKRLQALAAEL----EGALPLPGDVREEGDWARAVAAMEE 74 (234)
T ss_dssp ---CCCEEEESSTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHS----TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHh----hhceEEEecCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999987 999999877655443333 2688999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||||... ..+..+.+.++|++.+++|+.+++.+++.+.|.|.+++.+ +||++||..+.
T Consensus 75 ~~~~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~------~iv~isS~~~~ 141 (234)
T 2ehd_A 75 AFGELSALVNNAGVGV-------MKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGG------TIVNVGSLAGK 141 (234)
T ss_dssp HHSCCCEEEECCCCCC-------CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCE------EEEEECCTTTT
T ss_pred HcCCCCEEEECCCcCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCc------EEEEECCchhc
Confidence 9999999999999864 4556677889999999999999999999999999876543 99999999877
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhh
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
.+ .++...|+++|++++.++++++.|+++. +|++++++||+++|++....... ....+|+++|+.+++++++
T Consensus 142 ~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~---~~~~~~~dvA~~~~~l~~~ 213 (234)
T 2ehd_A 142 NP---FKGGAAYNASKFGLLGLAGAAMLDLREA--NVRVVNVLPGSVDTGFAGNTPGQ---AWKLKPEDVAQAVLFALEM 213 (234)
T ss_dssp SC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEECC-------------------CCHHHHHHHHHHHHHS
T ss_pred CC---CCCCchhhHHHHHHHHHHHHHHHHHhhc--CcEEEEEEeCCCcCCcccccccc---cCCCCHHHHHHHHHHHhCC
Confidence 65 5667899999999999999999999988 89999999999999986543211 1146999999999999998
Q ss_pred cCCCCCCceeecCCc
Q 023441 264 IKSHDNGKFFAWDGQ 278 (282)
Q Consensus 264 ~~~~~~g~~~~~d~~ 278 (282)
....++|+.....+.
T Consensus 214 ~~~~~~g~~~~~~~~ 228 (234)
T 2ehd_A 214 PGHAMVSEIELRPTR 228 (234)
T ss_dssp CCSSCCCEEECCC--
T ss_pred CcccccceEEEeecC
Confidence 888899988765553
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=258.50 Aligned_cols=208 Identities=25% Similarity=0.312 Sum_probs=180.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||++|||||++|||+++|++|+++|++ |++.+|+.+ +|++|+++++++++++
T Consensus 2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~--V~~~~r~~~--------------------~D~~~~~~v~~~~~~~-- 57 (223)
T 3uce_A 2 MGSDKTVYVVLGGTSGIGAELAKQLESEHTI--VHVASRQTG--------------------LDISDEKSVYHYFETI-- 57 (223)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHCSTTEE--EEEESGGGT--------------------CCTTCHHHHHHHHHHH--
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEecCCcc--------------------cCCCCHHHHHHHHHHh--
Confidence 5788999999999999999999999999987 999988764 7999999999988754
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++|+||||||... +..+..+.+.++|++.+++|+.+++++++.+.|.|+++ ++||++||..+.
T Consensus 58 --g~id~lv~nAg~~~------~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--------g~iv~~sS~~~~ 121 (223)
T 3uce_A 58 --GAFDHLIVTAGSYA------PAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQG--------GSITLTSGMLSR 121 (223)
T ss_dssp --CSEEEEEECCCCCC------CCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEE--------EEEEEECCGGGT
T ss_pred --CCCCEEEECCCCCC------CCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCC--------eEEEEecchhhc
Confidence 89999999999873 24567778899999999999999999999999999753 389999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc------------cCCCCCCCCChH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ------------RNVPEGKLFTKE 251 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~------------~~~~~~~~~~~~ 251 (282)
.+ .++...|+++|++++.|+++++.|+++ |+||+|+||+++|++.+... ...+..+..+|+
T Consensus 122 ~~---~~~~~~Y~asK~a~~~~~~~la~e~~~----i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (223)
T 3uce_A 122 KV---VANTYVKAAINAAIEATTKVLAKELAP----IRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLPVGKVGEAS 194 (223)
T ss_dssp SC---CTTCHHHHHHHHHHHHHHHHHHHHHTT----SEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHSTTCSCBCHH
T ss_pred cC---CCCchHHHHHHHHHHHHHHHHHHhhcC----cEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCCCCCccCHH
Confidence 76 677889999999999999999999974 99999999999999865432 234566778999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++|+.++++++ ...++|+.+.+|||+.
T Consensus 195 dvA~~~~~l~~--~~~~tG~~i~vdgG~~ 221 (223)
T 3uce_A 195 DIAMAYLFAIQ--NSYMTGTVIDVDGGAL 221 (223)
T ss_dssp HHHHHHHHHHH--CTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHcc--CCCCCCcEEEecCCee
Confidence 99999999997 4789999999999975
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=262.57 Aligned_cols=227 Identities=17% Similarity=0.206 Sum_probs=188.9
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
....+++||++|||||++|||++++++|+++|++ |++++|+.+..+ + + + ++.++ +|+ .++++++++.
T Consensus 12 ~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~--V~~~~r~~~~~~---~-~---~-~~~~~-~D~--~~~~~~~~~~ 78 (249)
T 1o5i_A 12 HMELGIRDKGVLVLAASRGIGRAVADVLSQEGAE--VTICARNEELLK---R-S---G-HRYVV-CDL--RKDLDLLFEK 78 (249)
T ss_dssp ----CCTTCEEEEESCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHH---H-T---C-SEEEE-CCT--TTCHHHHHHH
T ss_pred hHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEcCCHHHHH---h-h---C-CeEEE-eeH--HHHHHHHHHH
Confidence 3456789999999999999999999999999987 999999873221 1 1 2 56777 999 5567776665
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+ .++|+||||||... ..+..+.+.++|++.+++|+.+++.+++.+.|.|++++.| +||++||.
T Consensus 79 ~----~~iD~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g------~iv~isS~ 141 (249)
T 1o5i_A 79 V----KEVDILVLNAGGPK-------AGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWG------RIVAITSF 141 (249)
T ss_dssp S----CCCSEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCG
T ss_pred h----cCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc------EEEEEcch
Confidence 4 37999999999864 4566778889999999999999999999999999876543 99999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCChH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFTKE 251 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~~~ 251 (282)
.+..+ .++...|+++|++++.|+++++.|+++. +|++|+|+||+++|++.... ....+..+..+|+
T Consensus 142 ~~~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 216 (249)
T 1o5i_A 142 SVISP---IENLYTSNSARMALTGFLKTLSFEVAPY--GITVNCVAPGWTETERVKELLSEEKKKQVESQIPMRRMAKPE 216 (249)
T ss_dssp GGTSC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTSTTSSCBCHH
T ss_pred HhcCC---CCCCchHHHHHHHHHHHHHHHHHHhhhc--CeEEEEEeeCCCccCcccccchhhHHHHHHhcCCCCCCcCHH
Confidence 88766 5677899999999999999999999988 89999999999999985421 1234456677999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
++|+.+++++++....++|+.+.+||++..|
T Consensus 217 dvA~~i~~l~s~~~~~~tG~~~~vdgG~~~~ 247 (249)
T 1o5i_A 217 EIASVVAFLCSEKASYLTGQTIVVDGGLSKF 247 (249)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTCCCC
T ss_pred HHHHHHHHHcCccccCCCCCEEEECCCcccC
Confidence 9999999999987889999999999998765
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=259.23 Aligned_cols=229 Identities=22% Similarity=0.309 Sum_probs=193.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||++|||||++|||++++++|+++|++ |++++|+.++.+.+.+.. ..+.++++|++|+++++++++
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~---- 72 (244)
T 3d3w_A 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGAR--VVAVSRTQADLDSLVREC----PGIEPVCVDLGDWEATERALG---- 72 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHS----TTCEEEECCTTCHHHHHHHHT----
T ss_pred cccCCcEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHc----CCCCEEEEeCCCHHHHHHHHH----
Confidence 5789999999999999999999999999987 999999876655433322 145678999999999988876
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeecccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARVG 182 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~~~ 182 (282)
.++++|++|||||... ..+..+.+.+.|++.+++|+.+++++++.+.+.|.+++ . ++||++||..+
T Consensus 73 ~~~~id~vi~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~------~~iv~~sS~~~ 139 (244)
T 3d3w_A 73 SVGPVDLLVNNAAVAL-------LQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVP------GAIVNVSSQCS 139 (244)
T ss_dssp TCCCCCEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC------EEEEEECCGGG
T ss_pred HcCCCCEEEECCccCC-------CcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC------cEEEEeCchhh
Confidence 5688999999999864 45566778899999999999999999999999988654 3 39999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~~~~ 252 (282)
..+ .++...|++||++++.++++++.|+++. +|++++++||++.|++.+.. ....+.....+|++
T Consensus 140 ~~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 214 (244)
T 3d3w_A 140 QRA---VTNHSVYCSTKGALDMLTKVMALELGPH--KIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEH 214 (244)
T ss_dssp TSC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBTTTTHHHHSCSTTHHHHHHHTCTTCSCBCHHH
T ss_pred ccC---CCCCchHHHHHHHHHHHHHHHHHHhccc--CeEEEEEEeccccccchhhhccChHHHHHHHhhCCCCCCcCHHH
Confidence 765 5667899999999999999999999988 89999999999999975421 11234456789999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+.+++++++....++|+.+.+||++.
T Consensus 215 va~~~~~l~~~~~~~~~G~~~~v~gG~~ 242 (244)
T 3d3w_A 215 VVNAILFLLSDRSGMTTGSTLPVEGGFW 242 (244)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 9999999998777789999999999864
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=264.85 Aligned_cols=219 Identities=24% Similarity=0.404 Sum_probs=186.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|++++|++|||||++|||+++|++|+++|++ |++++|+.++.++..+ ..+.++.++++|++|.++++++++++.+
T Consensus 1 M~~~~k~vlVTGas~gIG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 75 (281)
T 3m1a_A 1 MSESAKVWLVTGASSGFGRAIAEAAVAAGDT--VIGTARRTEALDDLVA---AYPDRAEAISLDVTDGERIDVVAADVLA 75 (281)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESSGGGGHHHHH---HCTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHH---hccCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999987 9999999877655433 3356899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|+||||||... ..+..+.+.++|++.+++|+.+++.+++.+.|.|++++.| +||++||..+.
T Consensus 76 ~~g~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~------~iv~~sS~~~~ 142 (281)
T 3m1a_A 76 RYGRVDVLVNNAGRTQ-------VGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSG------SVVNISSFGGQ 142 (281)
T ss_dssp HHSCCSEEEECCCCEE-------ECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGGT
T ss_pred hCCCCCEEEECCCcCC-------CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------EEEEEcCcccc
Confidence 9999999999999874 4566677889999999999999999999999999876654 99999999888
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---------------------CC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR---------------------NV 242 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---------------------~~ 242 (282)
.+ .++...|++||++++.++++++.|++++ +|++++|+||+++|++...... ..
T Consensus 143 ~~---~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (281)
T 3m1a_A 143 LS---FAGFSAYSATKAALEQLSEGLADEVAPF--GIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLVQGS 217 (281)
T ss_dssp CC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHHHC-
T ss_pred CC---CCCchHHHHHHHHHHHHHHHHHHHhhcc--CcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHHhhc
Confidence 76 6677899999999999999999999988 8999999999999998653211 11
Q ss_pred CCCCCCChHHHHHHHHHHHhhcC
Q 023441 243 PEGKLFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~ 265 (282)
+..+..+|+++|+.++++++...
T Consensus 218 ~~~~~~~~~dva~a~~~~~~~~~ 240 (281)
T 3m1a_A 218 DGSQPGDPAKAAAAIRLALDTEK 240 (281)
T ss_dssp ----CBCHHHHHHHHHHHHHSSS
T ss_pred cCCCCCCHHHHHHHHHHHHhCCC
Confidence 22346789999999999998643
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=272.99 Aligned_cols=238 Identities=18% Similarity=0.255 Sum_probs=165.3
Q ss_pred cccccCcEEEEecC--CCchhHHHHHHHHhcCCCcEEEEeecCC-----------Ccccc-----------cccccccCC
Q 023441 23 SVKWKGGVSLVQGA--SRGIGLEFAKQLLEKNDKGCVIATCRNP-----------NGATG-----------LLDLKNRFP 78 (282)
Q Consensus 23 ~~~~~gk~vlItGa--s~giG~a~a~~la~~G~~~~vi~~~r~~-----------~~~~~-----------~~~~~~~~~ 78 (282)
.|+++||++||||| ++|||+++|++|+++|++ |++++|++ ++++. ..+.+...+
T Consensus 4 ~~~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~--Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (319)
T 2ptg_A 4 PVDLRGKTAFVAGVADSNGYGWAICKLLRAAGAR--VLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKP 81 (319)
T ss_dssp CCCCTTCEEEEECCCCTTSHHHHHHHHHHHTTCE--EEEEECHHHHHHHHC-----------------------------
T ss_pred ccccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCE--EEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcc
Confidence 36689999999999 899999999999999987 88887642 22111 111111111
Q ss_pred C---ceeEEEee------------CCC--------hhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccch
Q 023441 79 E---RLDVLQLD------------LTV--------ESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEK 135 (282)
Q Consensus 79 ~---~v~~~~~D------------ls~--------~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~ 135 (282)
. ...++.+| ++| +++++++++++.++++++|+||||||.... ...++.+.+.
T Consensus 82 ~~~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~-----~~~~~~~~~~ 156 (319)
T 2ptg_A 82 VDLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPE-----VTKPLLQTSR 156 (319)
T ss_dssp ---CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSS-----SSSCGGGCCH
T ss_pred ccccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCC-----CCCccccCCH
Confidence 1 13444443 343 458999999999999999999999997520 1345677888
Q ss_pred hhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCCCc-ccchhhHHHHHHHHHHHHHHhc
Q 023441 136 SSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGW-HSYRASKAALNQLTKSVSVEFG 214 (282)
Q Consensus 136 ~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~-~~Y~~sKa~~~~l~~~la~e~~ 214 (282)
++|++.+++|+.+++++++.+.|.|.++ ++||++||..+..+ .++. ..|++||+++++|+++++.|++
T Consensus 157 ~~~~~~~~vN~~g~~~l~~~~~~~m~~~--------g~Iv~isS~~~~~~---~~~~~~~Y~asKaal~~l~~~la~el~ 225 (319)
T 2ptg_A 157 KGYLAAVSSSSYSFVSLLQHFLPLMKEG--------GSALALSYIASEKV---IPGYGGGMSSAKAALESDCRTLAFEAG 225 (319)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHGGGEEEE--------EEEEEEEECC---------------------THHHHHHHHHHHH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHhcC--------ceEEEEeccccccc---cCccchhhHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999752 39999999988766 4555 5899999999999999999998
Q ss_pred c-CCCCeEEEEEecccccCCCCcccc----------------cCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 215 R-KKDPVICILLHPGTVDTDLSRPFQ----------------RNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 215 ~-~~~~i~v~~i~Pg~v~t~~~~~~~----------------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
+ + +|+||+|+||+++|++.+... ...+..+..+|+++|+.+++++++....++|+.+.+||
T Consensus 226 ~~~--gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdG 303 (319)
T 2ptg_A 226 RAR--AVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANAPLQKELESDDVGRAALFLLSPLARAVTGATLYVDN 303 (319)
T ss_dssp HHH--CCEEEEEEECCCC-------------------------------CCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ccc--CeeEEEEeeCCccChhhhhcccccchhhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCcccCCccCCEEEECC
Confidence 5 7 899999999999999865432 11234456799999999999999888999999999999
Q ss_pred ccc
Q 023441 278 QEI 280 (282)
Q Consensus 278 ~~~ 280 (282)
++.
T Consensus 304 G~~ 306 (319)
T 2ptg_A 304 GLH 306 (319)
T ss_dssp TCT
T ss_pred Cce
Confidence 974
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=271.48 Aligned_cols=236 Identities=19% Similarity=0.237 Sum_probs=189.0
Q ss_pred cccccCcEEEEecC--CCchhHHHHHHHHhcCCCcEEEEeecCC-----------CcccccccccccCCC---ceeEEEe
Q 023441 23 SVKWKGGVSLVQGA--SRGIGLEFAKQLLEKNDKGCVIATCRNP-----------NGATGLLDLKNRFPE---RLDVLQL 86 (282)
Q Consensus 23 ~~~~~gk~vlItGa--s~giG~a~a~~la~~G~~~~vi~~~r~~-----------~~~~~~~~~~~~~~~---~v~~~~~ 86 (282)
.|+++||++||||| ++|||+++|++|+++|++ |++++|++ ..++...+. .. +. .+.++.+
T Consensus 4 ~~~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~--Vv~~~r~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 79 (315)
T 2o2s_A 4 PIDLRGQTAFVAGVADSHGYGWAIAKHLASAGAR--VALGTWPPVLGLFQKSLQSGRLDEDRKL-PD-GSLIEFAGVYPL 79 (315)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHTTTCE--EEEEECHHHHHHHHHHHHHTTTHHHHBC-TT-SCBCCCSCEEEC
T ss_pred cccCCCCEEEEeCCCCCCChHHHHHHHHHHCCCE--EEEEecccccchhhhhhhhhhhhhhhhh-hc-cccccccccccc
Confidence 35689999999999 899999999999999988 88888753 122222111 11 11 1344444
Q ss_pred ------------eCCC--------hhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhh
Q 023441 87 ------------DLTV--------ESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146 (282)
Q Consensus 87 ------------Dls~--------~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 146 (282)
|++| +++++++++++.+++|++|+||||||.... ...++.+.+.++|++.+++|+
T Consensus 80 d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~-----~~~~~~~~~~~~~~~~~~~N~ 154 (315)
T 2o2s_A 80 DAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPE-----VTKPLLETSRKGYLAASSNSA 154 (315)
T ss_dssp CTTCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTT-----TTSCGGGCCHHHHHHHHHHHT
T ss_pred cccccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCc-----CCCCcccCCHHHHHHHHhhhh
Confidence 4443 678999999999999999999999997520 134566788899999999999
Q ss_pred cHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCCCc-ccchhhHHHHHHHHHHHHHHhcc-CCCCeEEEE
Q 023441 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGW-HSYRASKAALNQLTKSVSVEFGR-KKDPVICIL 224 (282)
Q Consensus 147 ~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~-~~Y~~sKa~~~~l~~~la~e~~~-~~~~i~v~~ 224 (282)
.+++.+++.+.|.|.++ ++||++||..+..+ .++. ..|++||+++..|+++++.|+++ + +|+||+
T Consensus 155 ~g~~~l~~~~~~~m~~~--------g~Iv~isS~~~~~~---~~~~~~~Y~asKaal~~l~~~la~el~~~~--gIrvn~ 221 (315)
T 2o2s_A 155 YSFVSLLQHFGPIMNEG--------GSAVTLSYLAAERV---VPGYGGGMSSAKAALESDTRTLAWEAGQKY--GVRVNA 221 (315)
T ss_dssp HHHHHHHHHHSTTEEEE--------EEEEEEEEGGGTSC---CTTCCTTHHHHHHHHHHHHHHHHHHHHHHT--CCEEEE
T ss_pred HHHHHHHHHHHHHHhcC--------CEEEEEeccccccc---CCCccHHHHHHHHHHHHHHHHHHHHhCccc--CeEEEE
Confidence 99999999999999752 39999999988766 4555 58999999999999999999985 7 899999
Q ss_pred EecccccCCCCcccc----------------cCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 225 LHPGTVDTDLSRPFQ----------------RNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 225 i~Pg~v~t~~~~~~~----------------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+||+++|++.+... ...+..+..+|+++|+.+++++++....++|+.+.+|||+.
T Consensus 222 v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 293 (315)
T 2o2s_A 222 ISAGPLKSRAASAIGKSGEKSFIDYAIDYSYNNAPLRRDLHSDDVGGAALFLLSPLARAVSGVTLYVDNGLH 293 (315)
T ss_dssp EEECCCCCHHHHHTTCSSSSCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred EecccccchhhhhccccccchhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCchhccCcCCEEEECCCee
Confidence 999999999754322 12355667799999999999999888999999999999974
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=264.34 Aligned_cols=237 Identities=16% Similarity=0.238 Sum_probs=189.0
Q ss_pred cccccCcEEEEecCC--CchhHHHHHHHHhcCCCcEEEEeecC-----------CCcccccccccccCC--CceeEEEee
Q 023441 23 SVKWKGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRN-----------PNGATGLLDLKNRFP--ERLDVLQLD 87 (282)
Q Consensus 23 ~~~~~gk~vlItGas--~giG~a~a~~la~~G~~~~vi~~~r~-----------~~~~~~~~~~~~~~~--~~v~~~~~D 87 (282)
.|+++||++|||||+ +|||+++|++|+++|++ |++++|+ .++++.+.+ +.... .....+.+|
T Consensus 3 ~~~l~~k~~lVTGas~~~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 79 (297)
T 1d7o_A 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAE--ILVGTWVPALNIFETSLRRGKFDQSRV-LPDGSLMEIKKVYPLD 79 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCE--EEEEEEHHHHHHHHHHHHTTTTTGGGB-CTTSSBCCEEEEEEEC
T ss_pred ccccCCCEEEEECCCCCCChHHHHHHHHHHCCCe--EEEeeccccchhhhhhhhhhHhhhhhh-hccccccccccccccc
Confidence 367899999999999 99999999999999988 8888764 223332221 11100 112344443
Q ss_pred --------C----CC--------hhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhc
Q 023441 88 --------L----TV--------ESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147 (282)
Q Consensus 88 --------l----s~--------~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 147 (282)
+ +| +++++++++++.++++++|+||||||+... ...++.+.+.++|++.+++|+.
T Consensus 80 ~~~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~-----~~~~~~~~~~~~~~~~~~vN~~ 154 (297)
T 1d7o_A 80 AVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPE-----VSKPLLETSRKGYLAAISASSY 154 (297)
T ss_dssp TTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTT-----TTSCGGGCCHHHHHHHHHHHTH
T ss_pred eeccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCcc-----CCCCcccCCHHHHHHHHHHhhh
Confidence 2 22 678999999999999999999999997520 1345667788999999999999
Q ss_pred HHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCCCc-ccchhhHHHHHHHHHHHHHHhcc-CCCCeEEEEE
Q 023441 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGW-HSYRASKAALNQLTKSVSVEFGR-KKDPVICILL 225 (282)
Q Consensus 148 ~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~-~~Y~~sKa~~~~l~~~la~e~~~-~~~~i~v~~i 225 (282)
+++++++++.|.|+++ ++||++||..+..+ .++. ..|++||+++++|+++++.|+++ + +|+||+|
T Consensus 155 g~~~l~~~~~~~m~~~--------g~iv~isS~~~~~~---~~~~~~~Y~asKaa~~~~~~~la~e~~~~~--gi~vn~v 221 (297)
T 1d7o_A 155 SFVSLLSHFLPIMNPG--------GASISLTYIASERI---IPGYGGGMSSAKAALESDTRVLAFEAGRKQ--NIRVNTI 221 (297)
T ss_dssp HHHHHHHHHGGGEEEE--------EEEEEEECGGGTSC---CTTCTTTHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEE
T ss_pred HHHHHHHHHHHHhccC--------ceEEEEeccccccC---CCCcchHHHHHHHHHHHHHHHHHHHhCccc--CcEEEEE
Confidence 9999999999999652 39999999988766 4555 58999999999999999999985 6 8999999
Q ss_pred ecccccCCCCcccc----------cCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 226 HPGTVDTDLSRPFQ----------RNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 226 ~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+||+++|++..... ...+..+..+|+++|+.+++++++....++|+.+.+||++.
T Consensus 222 ~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdgG~~ 286 (297)
T 1d7o_A 222 SAGPLGSRAAKAIGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATIYVDNGLN 286 (297)
T ss_dssp EECCCBCCCSSCCSHHHHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred eccccccchhhhccccHHHHHHhhccCCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCce
Confidence 99999999865421 12455667899999999999999888899999999999864
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-38 Score=274.24 Aligned_cols=232 Identities=18% Similarity=0.295 Sum_probs=191.2
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec---------CCCcccccccccccCCCceeEEEeeCCChhH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR---------NPNGATGLLDLKNRFPERLDVLQLDLTVEST 93 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r---------~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~ 93 (282)
.|+++||++|||||++|||+++|++|+++|++ |++.+| +.++.+...+.+...+.. ..+|++|.++
T Consensus 4 ~~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~--Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~---~~~D~~~~~~ 78 (319)
T 1gz6_A 4 PLRFDGRVVLVTGAGGGLGRAYALAFAERGAL--VVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK---AVANYDSVEA 78 (319)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCE---EEEECCCGGG
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEcCCcccccccCCHHHHHHHHHHHHhhCCe---EEEeCCCHHH
Confidence 46789999999999999999999999999987 888654 444444444444333332 3589999999
Q ss_pred HHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeE
Q 023441 94 IEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAV 173 (282)
Q Consensus 94 ~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~ 173 (282)
++++++++.+.++++|+||||||+.. ..++.+.+.++|+..+++|+.+++++++++.|.|++++.| +
T Consensus 79 ~~~~~~~~~~~~g~iD~lVnnAG~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g------r 145 (319)
T 1gz6_A 79 GEKLVKTALDTFGRIDVVVNNAGILR-------DRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYG------R 145 (319)
T ss_dssp HHHHHHHHHHHTSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE------E
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC------E
Confidence 99999999999999999999999875 4456677889999999999999999999999999876543 9
Q ss_pred EEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHH
Q 023441 174 VANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFS 253 (282)
Q Consensus 174 iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~ 253 (282)
||++||..+..+ .++...|++||++++.|+++++.|+++. +|++|+|+||++ |++.+...+. ......+|+++
T Consensus 146 IV~vsS~~~~~~---~~~~~~Y~aSK~a~~~~~~~la~el~~~--gI~vn~v~PG~~-t~~~~~~~~~-~~~~~~~p~dv 218 (319)
T 1gz6_A 146 IIMTASASGIYG---NFGQANYSAAKLGLLGLANTLVIEGRKN--NIHCNTIAPNAG-SRMTETVMPE-DLVEALKPEYV 218 (319)
T ss_dssp EEEECCHHHHHC---CTTCHHHHHHHHHHHHHHHHHHHHTGGG--TEEEEEEEEECC-STTTGGGSCH-HHHHHSCGGGT
T ss_pred EEEECChhhccC---CCCCHHHHHHHHHHHHHHHHHHHHhccc--CEEEEEEeCCCc-cccccccCCh-hhhccCCHHHH
Confidence 999999888766 4567899999999999999999999988 899999999998 8775542211 01124589999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+.+++++++ ...++|++|.+||++.
T Consensus 219 A~~~~~l~s~-~~~~tG~~~~v~GG~~ 244 (319)
T 1gz6_A 219 APLVLWLCHE-SCEENGGLFEVGAGWI 244 (319)
T ss_dssp HHHHHHHTST-TCCCCSCEEEEETTEE
T ss_pred HHHHHHHhCc-hhhcCCCEEEECCCeE
Confidence 9999999976 3578999999998864
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=260.75 Aligned_cols=228 Identities=23% Similarity=0.282 Sum_probs=184.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC-CCceeEEEeeCCCh-hHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-PERLDVLQLDLTVE-STIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~-~~~v~~~~~Dls~~-~~~~~~~~~~ 101 (282)
|+++||+++||||++|||++++++|+++|++ +|++++|+... +...++.... +.++.++.+|++|+ ++++++++++
T Consensus 1 m~l~~k~vlVtGas~gIG~~~a~~l~~~G~~-~v~~~~r~~~~-~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T 1sby_A 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLK-NFVILDRVENP-TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKI 78 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCCS-EEEEEESSCCH-HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEecCchH-HHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHH
Confidence 5788999999999999999999999999985 47888888743 1122222211 35789999999998 9999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++++++|+||||||... .++|++.+++|+.+++++++.+.|.|.+++.+ ..++||++||..
T Consensus 79 ~~~~g~id~lv~~Ag~~~---------------~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~---~~g~iv~isS~~ 140 (254)
T 1sby_A 79 FDQLKTVDILINGAGILD---------------DHQIERTIAINFTGLVNTTTAILDFWDKRKGG---PGGIIANICSVT 140 (254)
T ss_dssp HHHHSCCCEEEECCCCCC---------------TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTC---CCEEEEEECCGG
T ss_pred HHhcCCCCEEEECCccCC---------------HHHHhhhheeeehhHHHHHHHHHHHHHHhcCC---CCCEEEEECchh
Confidence 999999999999999742 36688999999999999999999999765310 014999999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC---CC-------CCCCCChH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN---VP-------EGKLFTKE 251 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~---~~-------~~~~~~~~ 251 (282)
+..+ .+....|++||++++.|+++++.++++. +|++++|+||+++|++.+..... .+ .....+|+
T Consensus 141 ~~~~---~~~~~~Y~~sK~a~~~~~~~la~~~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (254)
T 1sby_A 141 GFNA---IHQVPVYSASKAAVVSFTNSLAKLAPIT--GVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSE 215 (254)
T ss_dssp GTSC---CTTSHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTSCCEEHH
T ss_pred hccC---CCCchHHHHHHHHHHHHHHHHHHHhccC--CeEEEEEecCCccCccccccchhhhhhHHHHHHHhcCCCCCHH
Confidence 8766 5677899999999999999999998877 89999999999999975432110 00 11234899
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++|+.++++++ ...+|+.+.+||+.
T Consensus 216 dvA~~i~~~~~---~~~~G~~~~v~gG~ 240 (254)
T 1sby_A 216 QCGQNFVKAIE---ANKNGAIWKLDLGT 240 (254)
T ss_dssp HHHHHHHHHHH---HCCTTCEEEEETTE
T ss_pred HHHHHHHHHHH---cCCCCCEEEEeCCc
Confidence 99999999886 46789999999873
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=265.42 Aligned_cols=233 Identities=24% Similarity=0.297 Sum_probs=188.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc-CCCceeEEEeeCCCh-hHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR-FPERLDVLQLDLTVE-STIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~-~~~~v~~~~~Dls~~-~~~~~~~~~~ 101 (282)
..++||++|||||++|||+++|++|+++|++ |++++|+.++.++..+.+.+ .+.++.++.+|++|+ ++++++++.+
T Consensus 8 ~~~~~k~vlITGas~GIG~~~a~~L~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~ 85 (311)
T 3o26_A 8 TVTKRRCAVVTGGNKGIGFEICKQLSSNGIM--VVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFI 85 (311)
T ss_dssp ----CCEEEESSCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCCcEEEEecCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHH
Confidence 4578999999999999999999999999987 99999999887765544433 345899999999998 9999999999
Q ss_pred HHHcCCccEEEECcccCCCCCC-----------------------CCCcccccccchhhhhhhhhhhhcHHHHHHHHhhh
Q 023441 102 KEKYGSLNLLINASGILSIPNV-----------------------LQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSP 158 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 158 (282)
.++++++|+||||||+...... .....+..+.+.+.+++.+++|+.|++.+++.++|
T Consensus 86 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 165 (311)
T 3o26_A 86 KTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIP 165 (311)
T ss_dssp HHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhH
Confidence 9999999999999998741000 00112345567888999999999999999999999
Q ss_pred hhhcCCCCCccceeEEEEeeccccccCCC----------------------------------------CCCCcccchhh
Q 023441 159 LLKVGGTGIERDVAVVANLSARVGSIGDN----------------------------------------RLGGWHSYRAS 198 (282)
Q Consensus 159 ~l~~~~~g~~~~~~~iv~~ss~~~~~~~~----------------------------------------~~~~~~~Y~~s 198 (282)
.|++++.+ +||++||..+..+.. ..+....|++|
T Consensus 166 ~l~~~~~~------~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~S 239 (311)
T 3o26_A 166 LLQLSDSP------RIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTS 239 (311)
T ss_dssp HHTTSSSC------EEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHH
T ss_pred hhccCCCC------eEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHH
Confidence 99877655 999999998865421 01345789999
Q ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeec
Q 023441 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 199 Ka~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~ 275 (282)
|++++.|+++++.|++ +|+||+|+||+|+|++..... ..+|++.++.++.++.......+|.+|..
T Consensus 240 K~a~~~~~~~la~e~~----~i~v~~v~PG~v~T~~~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~g~~~~~ 305 (311)
T 3o26_A 240 KACLNAYTRVLANKIP----KFQVNCVCPGLVKTEMNYGIG-------NYTAEEGAEHVVRIALFPDDGPSGFFYDC 305 (311)
T ss_dssp HHHHHHHHHHHHHHCT----TSEEEEECCCSBCSGGGTTCC-------SBCHHHHHHHHHHHHTCCSSCCCSCEETC
T ss_pred HHHHHHHHHHHHhhcC----CceEEEecCCceecCCcCCCC-------CCCHHHHHHHHHHHHhCCCCCCCceEecc
Confidence 9999999999999985 599999999999999865532 25899999999999887666777777754
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=267.36 Aligned_cols=222 Identities=17% Similarity=0.249 Sum_probs=177.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC-----cccccccccccCCCceeEEEeeCCChhHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN-----GATGLLDLKNRFPERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~-----~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~ 98 (282)
|++++|++|||||++|||+++|++|+++|++ |++.+|+.. ..+.+.+.....+.++.++++|++|++++++++
T Consensus 1 M~m~~k~vlVTGas~GIG~aia~~L~~~G~~--V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~ 78 (324)
T 3u9l_A 1 MVMSKKIILITGASSGFGRLTAEALAGAGHR--VYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAI 78 (324)
T ss_dssp ----CCEEEESSCSSHHHHHHHHHHHHTTCE--EEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHH
Confidence 5678999999999999999999999999988 998888743 223333444444678999999999999999999
Q ss_pred HHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 99 KSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
+++.+++|++|+||||||+.. ..+..+.+.++|++.+++|+.|+++++++++|.|.+++.| +||++|
T Consensus 79 ~~~~~~~g~iD~lVnnAG~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g------~iV~is 145 (324)
T 3u9l_A 79 DQIIGEDGRIDVLIHNAGHMV-------FGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHG------LLIWIS 145 (324)
T ss_dssp HHHHHHHSCCSEEEECCCCCB-------CSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEEC
T ss_pred HHHHHHcCCCCEEEECCCcCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC------EEEEEe
Confidence 999999999999999999875 5677788899999999999999999999999999887664 999999
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCC---------------
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVP--------------- 243 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~--------------- 243 (282)
|..+..+. .+....|++||+++++|+++++.|+++. +|+|++|+||++.|++........+
T Consensus 146 S~~~~~~~--~~~~~~Y~asKaa~~~~~~~la~el~~~--gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (324)
T 3u9l_A 146 SSSSAGGT--PPYLAPYFAAKAAMDAIAVQYARELSRW--GIETSIIVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPNA 221 (324)
T ss_dssp CGGGTSCC--CSSCHHHHHHHHHHHHHHHHHHHHHHTT--TEEEEEEEECCC---------CBCCSCHHHHHHHHHTTTT
T ss_pred cchhccCC--CCcchhHHHHHHHHHHHHHHHHHHhhhh--CcEEEEEECCccccCchhhcccCCchHHHHHHhhcccccc
Confidence 99887442 3556789999999999999999999988 8999999999998775321110000
Q ss_pred -------------CCCCCChHHHHHHHHHHHhhc
Q 023441 244 -------------EGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 244 -------------~~~~~~~~~~a~~~~~~~~~~ 264 (282)
.....+|+++|++++.++...
T Consensus 222 ~~~~~~~~~~~~l~~~~~~p~~vA~aiv~~~~~~ 255 (324)
T 3u9l_A 222 GLGEEIKKAFAAIVPPDADVSLVADAIVRVVGTA 255 (324)
T ss_dssp THHHHHHHHHHHTSCTTCCTHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCC
Confidence 011247899999999998755
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=258.96 Aligned_cols=231 Identities=20% Similarity=0.264 Sum_probs=191.0
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHh-cCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLE-KNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~-~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.++|++|||||++|||++++++|++ +|++ |++++|+.+..+...+.+...+.++.++.+|++|.++++++++++.++
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGD--VVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSE--EEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCCe--EEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999999 9987 999999987766555555444668999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++++|+||||||... .........++++..+++|+.+++++++.+.+.|.+. ++||++||..+..
T Consensus 80 ~g~id~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--------g~iv~~sS~~~~~ 144 (276)
T 1wma_A 80 YGGLDVLVNNAGIAF-------KVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ--------GRVVNVSSIMSVR 144 (276)
T ss_dssp HSSEEEEEECCCCCC-------CTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE--------EEEEEECCHHHHH
T ss_pred cCCCCEEEECCcccc-------cCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCC--------CEEEEECChhhhc
Confidence 999999999999874 1111112247899999999999999999999998652 3899999987653
Q ss_pred CC---------------------------------------CCCCCcccchhhHHHHHHHHHHHHHHhccCC--CCeEEE
Q 023441 185 GD---------------------------------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKK--DPVICI 223 (282)
Q Consensus 185 ~~---------------------------------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~--~~i~v~ 223 (282)
+. .+.+ ...|++||++++.|++.++.++++.+ .+|+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~ 223 (276)
T 1wma_A 145 ALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWP-SSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLN 223 (276)
T ss_dssp HHHTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCC-SCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEE
T ss_pred ccccCChhHHhhccccccchhhhhhhhhhhhhhhcccccccCCCc-cchhHHHHHHHHHHHHHHHHHhhcccCCCceEEE
Confidence 20 0012 27899999999999999999998721 289999
Q ss_pred EEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhc--CCCCCCceeecCCcccCC
Q 023441 224 LLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNI--KSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 224 ~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~g~~~~~d~~~~~~ 282 (282)
+|+||++.|++... ....+|+++|+.++++++.. .+.++|+++. +++.++|
T Consensus 224 ~v~PG~v~t~~~~~-------~~~~~~~~~a~~~~~l~~~~~~~~~~~G~~~~-~~~~~~~ 276 (276)
T 1wma_A 224 ACCPGWVRTDMAGP-------KATKSPEEGAETPVYLALLPPDAEGPHGQFVS-EKRVEQW 276 (276)
T ss_dssp EEECCSBCSTTTCT-------TCSBCHHHHTHHHHHHHSCCTTCCCCCSCEEE-TTEEECC
T ss_pred EecCCccccCcCCc-------cccCChhHhhhhHhhhhcCcccccccCceEec-cCceecC
Confidence 99999999998653 23569999999999999754 3589999998 9999998
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=259.63 Aligned_cols=238 Identities=20% Similarity=0.258 Sum_probs=192.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC--CceeEEEeeCCChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP--ERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~--~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.+++||++|||||++|||++++++|+++|++ |++++|+.++.+.+.+.+...+ .++.++.+|++|+++++++++++
T Consensus 28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 105 (279)
T 1xg5_A 28 ERWRDRLALVTGASGGIGAAVARALVQQGLK--VVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAI 105 (279)
T ss_dssp GGGTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 3589999999999999999999999999987 9999999877665544443333 47889999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++++++|+||||||... ..++.+.+.++|++.+++|+.+++.+++.+++.|++++.. .++||++||..
T Consensus 106 ~~~~g~iD~vi~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~----~g~iv~isS~~ 174 (279)
T 1xg5_A 106 RSQHSGVDICINNAGLAR-------PDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVD----DGHIININSMS 174 (279)
T ss_dssp HHHHCCCSEEEECCCCCC-------CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCC----SCEEEEECCGG
T ss_pred HHhCCCCCEEEECCCCCC-------CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC----CceEEEEcChh
Confidence 999999999999999874 4455667788999999999999999999999999876530 02999999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhc--cCCCCeEEEEEecccccCCCCcccccC--------CCCCCCCChH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFG--RKKDPVICILLHPGTVDTDLSRPFQRN--------VPEGKLFTKE 251 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~--~~~~~i~v~~i~Pg~v~t~~~~~~~~~--------~~~~~~~~~~ 251 (282)
+... .+.+....|+++|++++.|++.++.|++ .. +|++++|+||+++|++....... .+.....+|+
T Consensus 175 ~~~~-~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~--~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (279)
T 1xg5_A 175 GHRV-LPLSVTHFYSATKYAVTALTEGLRQELREAQT--HIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPE 251 (279)
T ss_dssp GTSC-CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTC--CCEEEEEEESCBCSSHHHHHTTTCHHHHHHHHC---CBCHH
T ss_pred hccc-CCCCCCchhHHHHHHHHHHHHHHHHHHhhcCC--CeEEEEEecCcccchhhhhhcccChhHHhhhcccccCCCHH
Confidence 7622 2245667899999999999999999998 55 89999999999999984221111 1234567999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
++|+.++++++......+|.+...++
T Consensus 252 dvA~~i~~l~~~~~~~~~g~i~i~~~ 277 (279)
T 1xg5_A 252 DVAEAVIYVLSTPAHIQIGDIQMRPT 277 (279)
T ss_dssp HHHHHHHHHHHSCTTEEEEEEEEEET
T ss_pred HHHHHHHHHhcCCcceEeeeEEEccC
Confidence 99999999999877777776554433
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=261.12 Aligned_cols=224 Identities=20% Similarity=0.272 Sum_probs=190.2
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..++++||++|||||++|||++++++|+++|++ |++++|+.+..+...+.+...+.++.++.+|++|.++++++++++
T Consensus 25 ~~~~l~~k~vlITGasggIG~~la~~L~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 102 (272)
T 1yb1_A 25 RRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSK--LVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKV 102 (272)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cccccCCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHH
Confidence 357789999999999999999999999999987 999999987766655555555678999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++++++|+||||||... ..+..+.+.+++++.+++|+.+++++++.+.|.|.+++.+ +||++||..
T Consensus 103 ~~~~g~iD~li~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~------~iv~isS~~ 169 (272)
T 1yb1_A 103 KAEIGDVSILVNNAGVVY-------TSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHG------HIVTVASAA 169 (272)
T ss_dssp HHHTCCCSEEEECCCCCC-------CCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE------EEEEECCCC
T ss_pred HHHCCCCcEEEECCCcCC-------CcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC------EEEEEechh
Confidence 999999999999999874 4556677788999999999999999999999999876653 999999998
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccC-CCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRK-KDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNI 260 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~-~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 260 (282)
+..+ .+....|+++|++++.++++++.|++.. ..+|++++|+||+++|++.+.. ..+.....+|+++|+.++.+
T Consensus 170 ~~~~---~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~dva~~i~~~ 244 (272)
T 1yb1_A 170 GHVS---VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP--STSLGPTLEPEEVVNRLMHG 244 (272)
T ss_dssp -CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT--HHHHCCCCCHHHHHHHHHHH
T ss_pred hcCC---CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccccc--cccccCCCCHHHHHHHHHHH
Confidence 8765 4566789999999999999999999732 1289999999999999985431 11234567999999999999
Q ss_pred HhhcC
Q 023441 261 INNIK 265 (282)
Q Consensus 261 ~~~~~ 265 (282)
+....
T Consensus 245 ~~~~~ 249 (272)
T 1yb1_A 245 ILTEQ 249 (272)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 98654
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=254.47 Aligned_cols=229 Identities=22% Similarity=0.307 Sum_probs=193.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++++||++|||||++|||++++++|+++|++ |++.+|+.++.+...+.. ..+.++.+|++|+++++++++
T Consensus 3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~--V~~~~r~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~---- 72 (244)
T 1cyd_A 3 LNFSGLRALVTGAGKGIGRDTVKALHASGAK--VVAVTRTNSDLVSLAKEC----PGIEPVCVDLGDWDATEKALG---- 72 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHS----TTCEEEECCTTCHHHHHHHHT----
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHhc----cCCCcEEecCCCHHHHHHHHH----
Confidence 4578999999999999999999999999987 999999876655433322 246778999999999988876
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeecccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARVG 182 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~~~ 182 (282)
.++++|+||||||... ..+..+.+.++|++.+++|+.+++++++.+.+.|.+++ . ++||++||..+
T Consensus 73 ~~~~id~vi~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~------~~iv~~sS~~~ 139 (244)
T 1cyd_A 73 GIGPVDLLVNNAALVI-------MQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVP------GSIVNVSSMVA 139 (244)
T ss_dssp TCCCCSEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC------EEEEEECCGGG
T ss_pred HcCCCCEEEECCcccC-------CCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCC------eEEEEEcchhh
Confidence 5688999999999874 45566778899999999999999999999999987654 3 39999999987
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~~~~ 252 (282)
..+ .+....|+++|++++.+++.++.|+++. +|++++++||++.|++.... ....+...+.+|++
T Consensus 140 ~~~---~~~~~~Y~~sK~a~~~~~~~~a~~~~~~--gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 214 (244)
T 1cyd_A 140 HVT---FPNLITYSSTKGAMTMLTKAMAMELGPH--KIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVED 214 (244)
T ss_dssp TSC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTTSSCBCHHH
T ss_pred cCC---CCCcchhHHHHHHHHHHHHHHHHHhhhc--CeEEEEEecCcccCccccccccCHHHHHHHHhcCCccCCCCHHH
Confidence 765 5667899999999999999999999987 89999999999999864321 11234456789999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+.+++++++....++|+.+.+||++.
T Consensus 215 va~~~~~l~~~~~~~~~G~~~~v~gG~~ 242 (244)
T 1cyd_A 215 VVNSILFLLSDRSASTSGGGILVDAGYL 242 (244)
T ss_dssp HHHHHHHHHSGGGTTCCSSEEEESTTGG
T ss_pred HHHHHHHHhCchhhcccCCEEEECCCcc
Confidence 9999999998877889999999999874
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=260.04 Aligned_cols=227 Identities=21% Similarity=0.297 Sum_probs=185.9
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC--CCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF--PERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~--~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++||++|||||++|||++++++|+++|++ |++++|+.++.+...+.+.+. +.++.++++|++|+++++++++.+.+
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGAK--VALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD 82 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999999999987 999999887655433333221 34789999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|+||||||... .++|++.+++|+.+++.+++.+.|.|.+++.+ ..++||++||..+.
T Consensus 83 ~~g~id~lv~~Ag~~~---------------~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~---~~g~iv~isS~~~~ 144 (267)
T 2gdz_A 83 HFGRLDILVNNAGVNN---------------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGG---EGGIIINMSSLAGL 144 (267)
T ss_dssp HHSCCCEEEECCCCCC---------------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTC---CCEEEEEECCGGGT
T ss_pred HcCCCCEEEECCCCCC---------------hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCC---CCCEEEEeCCcccc
Confidence 9999999999999752 35688999999999999999999999765310 11499999999887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHH--HHHhccCCCCeEEEEEecccccCCCCcccccC----------------CCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSV--SVEFGRKKDPVICILLHPGTVDTDLSRPFQRN----------------VPEG 245 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~l--a~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~----------------~~~~ 245 (282)
.+ .++...|+++|++++.+++++ +.|+++. +|++|+|+||+++|++....... .+..
T Consensus 145 ~~---~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (267)
T 2gdz_A 145 MP---VAQQPVYCASKHGIVGFTRSAALAANLMNS--GVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYY 219 (267)
T ss_dssp SC---CTTCHHHHHHHHHHHHHHHHHHHHHHHHTC--CEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHHH
T ss_pred CC---CCCCchHHHHHHHHHHHHHHHHHHHHhccC--CcEEEEEecCcCcchhhhccccccccchhhhHHHHHHHHhccc
Confidence 66 566789999999999999995 6888887 89999999999999975432110 0012
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
...+|+++|+.+++++++. .++|+.+.+++++
T Consensus 220 ~~~~~~dvA~~v~~l~s~~--~~~G~~~~v~gg~ 251 (267)
T 2gdz_A 220 GILDPPLIANGLITLIEDD--ALNGAIMKITTSK 251 (267)
T ss_dssp CCBCHHHHHHHHHHHHHCT--TCSSCEEEEETTT
T ss_pred cCCCHHHHHHHHHHHhcCc--CCCCcEEEecCCC
Confidence 3469999999999999864 4899998887654
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=272.45 Aligned_cols=237 Identities=13% Similarity=0.028 Sum_probs=185.6
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHh-cCCCcEEEEeecCCCccccc------------ccccccCCCceeEEEeeCCChh
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLE-KNDKGCVIATCRNPNGATGL------------LDLKNRFPERLDVLQLDLTVES 92 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~-~G~~~~vi~~~r~~~~~~~~------------~~~~~~~~~~v~~~~~Dls~~~ 92 (282)
-.||++|||||++|||+++|+.|++ +|++ |++++|+.+..+.. .+.+...+.++..+++|++|++
T Consensus 59 ~~gKvaLVTGASsGIG~AiA~~LA~~~GA~--Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~ 136 (422)
T 3s8m_A 59 DGPKKVLVIGASSGYGLASRITAAFGFGAD--TLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDA 136 (422)
T ss_dssp SSCSEEEEESCSSHHHHHHHHHHHHHHCCE--EEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHhCCCE--EEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHH
Confidence 3589999999999999999999999 9998 99999988765431 2444556778999999999999
Q ss_pred HHHHHHHHHHHHc-CCccEEEECcccCCCC---------CCCCCcc------------------cccccchhhhhhhhhh
Q 023441 93 TIEASAKSIKEKY-GSLNLLINASGILSIP---------NVLQPET------------------TLNKVEKSSLMLAYEV 144 (282)
Q Consensus 93 ~~~~~~~~~~~~~-~~id~lv~~ag~~~~~---------~~~~~~~------------------~~~~~~~~~~~~~~~~ 144 (282)
+++++++.+.++| |+||+||||||....+ ....+.. .+.+.+.++|+..+++
T Consensus 137 ~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~V 216 (422)
T 3s8m_A 137 ARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITV 216 (422)
T ss_dssp HHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHh
Confidence 9999999999999 9999999999973100 0000110 1235788999999999
Q ss_pred hhcHHH-HHHHHhhhh-hhcCCCCCccceeEEEEeeccccccCCCCCCCc--ccchhhHHHHHHHHHHHHHHhccCCCCe
Q 023441 145 NAVGPI-LVIKHMSPL-LKVGGTGIERDVAVVANLSARVGSIGDNRLGGW--HSYRASKAALNQLTKSVSVEFGRKKDPV 220 (282)
Q Consensus 145 n~~~~~-~~~~~~~~~-l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~--~~Y~~sKa~~~~l~~~la~e~~~~~~~i 220 (282)
|..+.| .+++.+.+. |..+ . ++||++||..+..+ .+.+ ..|++||+++.+|+++|+.|++++ +|
T Consensus 217 n~~~~~~~~~~a~~~~~m~~~-g------G~IVniSSi~g~~~---~p~~~~~aY~ASKaAl~~lTrsLA~Ela~~--GI 284 (422)
T 3s8m_A 217 MGGQDWELWIDALEGAGVLAD-G------ARSVAFSYIGTEIT---WPIYWHGALGKAKVDLDRTAQRLNARLAKH--GG 284 (422)
T ss_dssp HSSHHHHHHHHHHHHTTCEEE-E------EEEEEEEECCCGGG---HHHHTSHHHHHHHHHHHHHHHHHHHHHHTT--TC
T ss_pred hchhHHHHHHHHHHHHHHhhC-C------CEEEEEeCchhhcc---CCCccchHHHHHHHHHHHHHHHHHHHhCcc--CE
Confidence 999987 777777653 4332 2 49999999998876 4444 789999999999999999999998 89
Q ss_pred EEEEEecccccCCCCccccc--------CCCCCCCCChHHHHHHHHHHHhhcCCCCC-CceeecCC
Q 023441 221 ICILLHPGTVDTDLSRPFQR--------NVPEGKLFTKEFSVQKLLNIINNIKSHDN-GKFFAWDG 277 (282)
Q Consensus 221 ~v~~i~Pg~v~t~~~~~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-g~~~~~d~ 277 (282)
|||+|+||+++|++...... ..+..+.-.||+|++++.+++++.. +.+ |....+|+
T Consensus 285 RVNaVaPG~i~T~~~~~ip~~~~~~~~~~~~m~r~G~pEdva~~v~~L~sd~l-y~~~~~~~~~d~ 349 (422)
T 3s8m_A 285 GANVAVLKSVVTQASAAIPVMPLYISMVYKIMKEKGLHEGTIEQLDRLFRERL-YRQDGQPAEVDE 349 (422)
T ss_dssp EEEEEEECCCCCTTGGGSTHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTT-TCTTCCCCCCCT
T ss_pred EEEEEEcCCCcChhhhcCCCChHHHHHHHhhhcCCcChHHHHHHHHHHhcchh-hccCCCCcccCC
Confidence 99999999999999765421 1134566789999999999998754 322 44443443
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=290.38 Aligned_cols=234 Identities=20% Similarity=0.296 Sum_probs=181.2
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec---------CCCcccccccccccCCCceeEEEeeCCCh
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR---------NPNGATGLLDLKNRFPERLDVLQLDLTVE 91 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r---------~~~~~~~~~~~~~~~~~~v~~~~~Dls~~ 91 (282)
...++++||++|||||++|||+++|++|+++|++ |++.+| +.+.++...+.+...+..+ .+|++|.
T Consensus 12 ~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~--Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~D~~d~ 86 (613)
T 3oml_A 12 DGKLRYDGRVAVVTGAGAGLGREYALLFAERGAK--VVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEA---VADYNSV 86 (613)
T ss_dssp ---CCCTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEC--------------CHHHHHHHHHHTTCCE---EECCCCG
T ss_pred ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCcccccccCCHHHHHHHHHHHHHhCCeE---EEEeCCH
Confidence 4557899999999999999999999999999998 898887 5555555555554444443 4899999
Q ss_pred hHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccce
Q 023441 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDV 171 (282)
Q Consensus 92 ~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~ 171 (282)
++++++++++.+++|+||+||||||+.. ..++.+.+.++|+..+++|+.|++++++++.|.|++++.|
T Consensus 87 ~~~~~~~~~~~~~~g~iDiLVnnAGi~~-------~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g----- 154 (613)
T 3oml_A 87 IDGAKVIETAIKAFGRVDILVNNAGILR-------DRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYG----- 154 (613)
T ss_dssp GGHHHHHC----------CEECCCCCCC-------CCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCE-----
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCCCCC-------CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----
Confidence 9999999999999999999999999985 5567778899999999999999999999999999988765
Q ss_pred eEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChH
Q 023441 172 AVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKE 251 (282)
Q Consensus 172 ~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~ 251 (282)
+||++||..+..+ .++...|++||+++.+|+++++.|++++ +|+||+|+||.+ |++....... ......+|+
T Consensus 155 -~IV~isS~a~~~~---~~~~~~Y~asKaal~~lt~~la~e~~~~--gI~vn~v~Pg~~-t~~~~~~~~~-~~~~~~~pe 226 (613)
T 3oml_A 155 -RIIMTSSNSGIYG---NFGQVNYTAAKMGLIGLANTVAIEGARN--NVLCNVIVPTAA-SRMTEGILPD-ILFNELKPK 226 (613)
T ss_dssp -EEEEECCHHHHHC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEEC-------CCCCCH-HHHTTCCGG
T ss_pred -EEEEECCHHHcCC---CCCChHHHHHHHHHHHHHHHHHHHhCcc--CeEEEEEECCCC-Chhhhhccch-hhhhcCCHH
Confidence 9999999998877 5677899999999999999999999998 899999999975 5555443221 112345899
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++|+.+.+++++. ..++|+++.+|||+.
T Consensus 227 dvA~~v~~L~s~~-~~~tG~~i~vdGG~~ 254 (613)
T 3oml_A 227 LIAPVVAYLCHES-CEDNGSYIESAAGWA 254 (613)
T ss_dssp GTHHHHHHTTSTT-CCCCSCEEEEETTEE
T ss_pred HHHHHHHHhcCCC-cCCCceEEEECCCeE
Confidence 9999999999887 889999999999875
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=246.18 Aligned_cols=225 Identities=22% Similarity=0.240 Sum_probs=186.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++|++|||||++|||++++++|+++|++ |++++|+.+ . .++.++++|++|+++++++++++ ++++
T Consensus 1 ~~k~vlVtGasggiG~~la~~l~~~G~~--V~~~~r~~~-~-----------~~~~~~~~D~~~~~~~~~~~~~~-~~~~ 65 (242)
T 1uay_A 1 MERSALVTGGASGLGRAAALALKARGYR--VVVLDLRRE-G-----------EDLIYVEGDVTREEDVRRAVARA-QEEA 65 (242)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHTCE--EEEEESSCC-S-----------SSSEEEECCTTCHHHHHHHHHHH-HHHS
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCE--EEEEccCcc-c-----------cceEEEeCCCCCHHHHHHHHHHH-HhhC
Confidence 4789999999999999999999999987 999999875 2 24588999999999999999999 8889
Q ss_pred CccEEEECcccCCCCCCCCCccccccc----chhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKV----EKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~----~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++|++|||||... ..+..+. +.++|++.+++|+.+++++++.+.+.|.+++.......++||++||..+
T Consensus 66 ~~d~li~~ag~~~-------~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~ 138 (242)
T 1uay_A 66 PLFAVVSAAGVGL-------AEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAA 138 (242)
T ss_dssp CEEEEEECCCCCC-------CCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHH
T ss_pred CceEEEEcccccC-------cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhh
Confidence 9999999999875 2222232 3448999999999999999999999998754111112248999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCC-CCCCChHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPE-GKLFTKEFS 253 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~-~~~~~~~~~ 253 (282)
..+ .+....|+++|++++.+++.++.|+++. +|++++|+||++.|++..... ...+. ....+|+++
T Consensus 139 ~~~---~~~~~~Y~~sK~a~~~~~~~l~~e~~~~--gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 213 (242)
T 1uay_A 139 FEG---QIGQAAYAASKGGVVALTLPAARELAGW--GIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPFPPRLGRPEEY 213 (242)
T ss_dssp HHC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCSSCSCCCHHHH
T ss_pred ccC---CCCCchhhHHHHHHHHHHHHHHHHHhhc--CcEEEEEEeccCcchhhhccchhHHHHHHhhCCCcccCCCHHHH
Confidence 766 5667899999999999999999999988 899999999999998754321 22344 567799999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+.+++++++ ..++|+.+.+||++.
T Consensus 214 a~~~~~l~~~--~~~~G~~~~v~gG~~ 238 (242)
T 1uay_A 214 AALVLHILEN--PMLNGEVVRLDGALR 238 (242)
T ss_dssp HHHHHHHHHC--TTCCSCEEEESTTCC
T ss_pred HHHHHHHhcC--CCCCCcEEEEcCCee
Confidence 9999999987 788999999999864
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=266.19 Aligned_cols=238 Identities=14% Similarity=0.056 Sum_probs=188.4
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHh-cCCCcEEEEeecCCCcccc------------cccccccCCCceeEEEeeCCCh
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLE-KNDKGCVIATCRNPNGATG------------LLDLKNRFPERLDVLQLDLTVE 91 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~-~G~~~~vi~~~r~~~~~~~------------~~~~~~~~~~~v~~~~~Dls~~ 91 (282)
.-.||++|||||++|||+++|+.|++ +|++ |++++|+.+..+. ..+.+...+.++..+.+|++|+
T Consensus 44 ~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~--Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~ 121 (405)
T 3zu3_A 44 ANGPKRVLVIGASTGYGLAARITAAFGCGAD--TLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSD 121 (405)
T ss_dssp TTCCSEEEEESCSSHHHHHHHHHHHHHHCCE--EEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSH
T ss_pred CCCCCEEEEeCcchHHHHHHHHHHHHhcCCE--EEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCH
Confidence 45689999999999999999999999 9998 8889888765432 2234445567899999999999
Q ss_pred hHHHHHHHHHHHHcCCccEEEECcccCCCCC---------CCCCc------------------ccccccchhhhhhhhhh
Q 023441 92 STIEASAKSIKEKYGSLNLLINASGILSIPN---------VLQPE------------------TTLNKVEKSSLMLAYEV 144 (282)
Q Consensus 92 ~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~---------~~~~~------------------~~~~~~~~~~~~~~~~~ 144 (282)
++++++++.+.++||++|+||||||....++ ...+. .++.+.+.++|+.++++
T Consensus 122 ~~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~V 201 (405)
T 3zu3_A 122 EIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAV 201 (405)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHh
Confidence 9999999999999999999999999741000 00011 12366788999999999
Q ss_pred hhcHHH-HHHHHhhh-hhhcCCCCCccceeEEEEeeccccccCCCCCCCc--ccchhhHHHHHHHHHHHHHHhccCCCCe
Q 023441 145 NAVGPI-LVIKHMSP-LLKVGGTGIERDVAVVANLSARVGSIGDNRLGGW--HSYRASKAALNQLTKSVSVEFGRKKDPV 220 (282)
Q Consensus 145 n~~~~~-~~~~~~~~-~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~--~~Y~~sKa~~~~l~~~la~e~~~~~~~i 220 (282)
|..+.| .+++.+.+ .|..+ . ++||++||..+..+ .+.+ ..|++||+++++|+++|+.|++++. +|
T Consensus 202 n~~~~~~~~~~~~~~~~m~~~-g------G~IVniSSi~~~~~---~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~-GI 270 (405)
T 3zu3_A 202 MGGEDWQMWIDALLDAGVLAE-G------AQTTAFTYLGEKIT---HDIYWNGSIGAAKKDLDQKVLAIRESLAAHG-GG 270 (405)
T ss_dssp HSSHHHHHHHHHHHHHTCEEE-E------EEEEEEECCCCGGG---TTTTTTSHHHHHHHHHHHHHHHHHHHHHTTT-SC
T ss_pred hchhHHHHHHHHHHHHhhhhC-C------cEEEEEeCchhhCc---CCCccchHHHHHHHHHHHHHHHHHHHhCccc-Ce
Confidence 999998 77777664 44432 2 49999999998876 5555 8999999999999999999999862 59
Q ss_pred EEEEEecccccCCCCcccccC--------CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 221 ICILLHPGTVDTDLSRPFQRN--------VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 221 ~v~~i~Pg~v~t~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
|||+|+||++.|++....... .+..+.-.||++++++.+++++ .++|....+|++
T Consensus 271 RVNaVaPG~i~T~~s~~ip~~p~y~~~l~~~mkr~G~~Ed~a~~i~~L~sd---~l~~~~~~~D~~ 333 (405)
T 3zu3_A 271 DARVSVLKAVVSQASSAIPMMPLYLSLLFKVMKEKGTHEGCIEQVYSLYKD---SLCGDSPHMDQE 333 (405)
T ss_dssp EEEEEECCCCCCHHHHTSTTHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH---TTSSSCCCBCTT
T ss_pred EEEEEEeCCCcCchhhcCCCCcHHHHHHHHHHhcCCCcHHHHHHHHHHHhc---cccCCCCCcCCC
Confidence 999999999999986543211 1244556899999999999987 567777777765
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=258.18 Aligned_cols=214 Identities=20% Similarity=0.302 Sum_probs=155.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||++|||||++|||+++|++|++ |+. |++++|+.+..+...+. .++.++.+|+++.++ .+.+.+..+
T Consensus 1 m~l~~k~vlITGas~gIG~~~a~~l~~-g~~--v~~~~r~~~~~~~~~~~-----~~~~~~~~D~~~~~~-~~~~~~~~~ 71 (245)
T 3e9n_A 1 MSLKKKIAVVTGATGGMGIEIVKDLSR-DHI--VYALGRNPEHLAALAEI-----EGVEPIESDIVKEVL-EEGGVDKLK 71 (245)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHTT-TSE--EEEEESCHHHHHHHHTS-----TTEEEEECCHHHHHH-TSSSCGGGT
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHhC-CCe--EEEEeCCHHHHHHHHhh-----cCCcceecccchHHH-HHHHHHHHH
Confidence 578999999999999999999999988 876 99999988776554331 368999999998876 555566667
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++++|+||||||... ..+..+.+.++|++.+++|+.+++.+++.+.|.|++++ | +||++||..+.
T Consensus 72 ~~~~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g------~iv~isS~~~~ 137 (245)
T 3e9n_A 72 NLDHVDTLVHAAAVAR-------DTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-G------CVIYINSGAGN 137 (245)
T ss_dssp TCSCCSEEEECC-----------------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C------EEEEEC-----
T ss_pred hcCCCCEEEECCCcCC-------CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-C------eEEEEcCcccc
Confidence 7899999999999875 55667778899999999999999999999999997654 3 89999999888
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC----CCCCCCCChHHHHHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN----VPEGKLFTKEFSVQKLLN 259 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~----~~~~~~~~~~~~a~~~~~ 259 (282)
.+ .++...|++||++++.|+++++.|+++. +|++++|+||+++|++.+..... .+.....+|+++|+.+++
T Consensus 138 ~~---~~~~~~Y~asK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~dvA~~i~~ 212 (245)
T 3e9n_A 138 GP---HPGNTIYAASKHALRGLADAFRKEEANN--GIRVSTVSPGPTNTPMLQGLMDSQGTNFRPEIYIEPKEIANAIRF 212 (245)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCC----------------CCGGGSCHHHHHHHHHH
T ss_pred cC---CCCchHHHHHHHHHHHHHHHHHHHhhhc--CeEEEEEecCCccCchhhhhhhhhhcccccccCCCHHHHHHHHHH
Confidence 76 6677899999999999999999999988 89999999999999987654332 234456799999999999
Q ss_pred HHhhcC
Q 023441 260 IINNIK 265 (282)
Q Consensus 260 ~~~~~~ 265 (282)
+++...
T Consensus 213 l~~~~~ 218 (245)
T 3e9n_A 213 VIDAGE 218 (245)
T ss_dssp HHTSCT
T ss_pred HHcCCC
Confidence 998654
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=256.93 Aligned_cols=224 Identities=20% Similarity=0.185 Sum_probs=184.4
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC-CceeEEEeeCCChhHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP-ERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~-~~v~~~~~Dls~~~~~~~~~~ 99 (282)
..+.+++||++|||||++|||++++++|+++|++ |++++|+.++.+...+.+.+.+ .++.++.+|++|.++++++++
T Consensus 21 ~~~~~~~~k~vlITGasggIG~~la~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~ 98 (286)
T 1xu9_A 21 FRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAH--VVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVA 98 (286)
T ss_dssp CCGGGGTTCEEEESSCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHH
T ss_pred CChhhcCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH
Confidence 3456789999999999999999999999999987 9999999887766544443333 378999999999999999999
Q ss_pred HHHHHcCCccEEEEC-cccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 100 SIKEKYGSLNLLINA-SGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 100 ~~~~~~~~id~lv~~-ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
++.++++++|++||| +|... .+..+.+.+++++.+++|+.+++.+++.+.|.|.+++ | +||++|
T Consensus 99 ~~~~~~g~iD~li~naag~~~--------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g------~iv~is 163 (286)
T 1xu9_A 99 QAGKLMGGLDMLILNHITNTS--------LNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN-G------SIVVVS 163 (286)
T ss_dssp HHHHHHTSCSEEEECCCCCCC--------CCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C------EEEEEE
T ss_pred HHHHHcCCCCEEEECCccCCC--------CccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCC-C------EEEEEC
Confidence 999999999999999 56643 2333456789999999999999999999999987543 2 999999
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHH
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLL 258 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~ 258 (282)
|..+..+ .++...|++||++++.++++++.|+...+.+|++++++||+++|++..............+|+++|+.++
T Consensus 164 S~~~~~~---~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~vA~~i~ 240 (286)
T 1xu9_A 164 SLAGKVA---YPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEII 240 (286)
T ss_dssp EGGGTSC---CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHSCGGGGGGCBCHHHHHHHHH
T ss_pred CcccccC---CCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhHHHhccccccCCCCCHHHHHHHHH
Confidence 9988766 5677899999999999999999999533348999999999999998543221112234569999999999
Q ss_pred HHHhhc
Q 023441 259 NIINNI 264 (282)
Q Consensus 259 ~~~~~~ 264 (282)
..+...
T Consensus 241 ~~~~~~ 246 (286)
T 1xu9_A 241 KGGALR 246 (286)
T ss_dssp HHHHTT
T ss_pred HHHhcC
Confidence 988754
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=263.45 Aligned_cols=225 Identities=23% Similarity=0.249 Sum_probs=179.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc------cCCCceeEEEeeCCChhHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN------RFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~------~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
+||++|||||++|||+++|++|+++|++ |++++|+....+...+.+. ..+.++.++++|++|.+++++++++
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~G~~--v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 78 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASDPSQ--SFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARER 78 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTCTTC--CEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCc--eEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHH
Confidence 4799999999999999999999999998 7778877666554333222 2245899999999999999999998
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+. ++++|+||||||+.. ..++.+.+.++|++.+++|+.+++++++.++|.|++++.| +||++||.
T Consensus 79 ~~--~g~iD~lVnnAG~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g------~IV~isS~ 143 (327)
T 1jtv_A 79 VT--EGRVDVLVCNAGLGL-------LGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSG------RVLVTGSV 143 (327)
T ss_dssp CT--TSCCSEEEECCCCCC-------CSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEEEEG
T ss_pred Hh--cCCCCEEEECCCcCC-------CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC------EEEEECCc
Confidence 83 589999999999864 4566777889999999999999999999999999876544 99999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCC-------C----------
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNV-------P---------- 243 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~-------~---------- 243 (282)
.+..+ .+....|++||++++.|+++++.|+++. +|+|++|+||+++|++.+...... .
T Consensus 144 ~~~~~---~~~~~~Y~aSK~a~~~~~~~la~el~~~--gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (327)
T 1jtv_A 144 GGLMG---LPFNDVYCASKFALEGLCESLAVLLLPF--GVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQY 218 (327)
T ss_dssp GGTSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHH
T ss_pred ccccC---CCCChHHHHHHHHHHHHHHHHHHHhhhc--CcEEEEEEeCcccChHHhhhhhcchhhhccCCHHHHHHHHHH
Confidence 88876 5677899999999999999999999988 899999999999999865432110 0
Q ss_pred -------CCC-CCChHHHHHHHHHHHhhcC---CCCCCcee
Q 023441 244 -------EGK-LFTKEFSVQKLLNIINNIK---SHDNGKFF 273 (282)
Q Consensus 244 -------~~~-~~~~~~~a~~~~~~~~~~~---~~~~g~~~ 273 (282)
... ..+|+++|+.+++++.... .+++|..+
T Consensus 219 ~~~~~~~~~~~~~~pedvA~~i~~l~~~~~~~~~~~tg~~~ 259 (327)
T 1jtv_A 219 LAHSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERF 259 (327)
T ss_dssp HHHHHHHHHHHCBCHHHHHHHHHHHHHCSSCCSEEESCSTT
T ss_pred HHHHHHhhhhcCCCHHHHHHHHHHHHcCCCCCeEEEeCchH
Confidence 011 2489999999999998532 34566543
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-35 Score=247.46 Aligned_cols=212 Identities=18% Similarity=0.193 Sum_probs=169.3
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|++|||||++|||++++++|+++|++ |++++|+.++.+. . +++|++|.++++++++++ ++++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~--V~~~~r~~~~~~~----------~---~~~Dl~~~~~v~~~~~~~---~~~i 63 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQ--IVGIDIRDAEVIA----------D---LSTAEGRKQAIADVLAKC---SKGM 63 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSSSSEEC----------C---TTSHHHHHHHHHHHHTTC---TTCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCCchhhcc----------c---cccCCCCHHHHHHHHHHh---CCCC
Confidence 68999999999999999999999987 9999998866432 1 568999999998887733 2899
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC--
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD-- 186 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~-- 186 (282)
|+||||||... . .+.|++.+++|+.+++.+++.+.|.|.+++.| +||++||..+....
T Consensus 64 d~lv~~Ag~~~-------~-------~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g------~iv~isS~~~~~~~~~ 123 (257)
T 1fjh_A 64 DGLVLCAGLGP-------Q-------TKVLGNVVSVNYFGATELMDAFLPALKKGHQP------AAVVISSVASAHLAFD 123 (257)
T ss_dssp SEEEECCCCCT-------T-------CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSC------EEEEECCGGGGSSCGG
T ss_pred CEEEECCCCCC-------C-------cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCc------EEEEECChhhhccccc
Confidence 99999999763 1 12388999999999999999999999877654 99999999887310
Q ss_pred -----------------------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-cc--
Q 023441 187 -----------------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-QR-- 240 (282)
Q Consensus 187 -----------------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-~~-- 240 (282)
.+.+....|++||++++.++++++.|+++. +|++++|+||+++|++.+.. ..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~--gi~v~~v~PG~v~t~~~~~~~~~~~ 201 (257)
T 1fjh_A 124 KNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEA--GVRLNTIAPGATETPLLQAGLQDPR 201 (257)
T ss_dssp GCTTHHHHHHTCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHT--TCEEEEEEECC--------------
T ss_pred cchhhhhhcccchhhhhhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEeeCCCCCccchhhccchh
Confidence 123456789999999999999999999988 89999999999999986643 11
Q ss_pred --------CCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 241 --------NVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 241 --------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
..+.....+|+++|+.+++++++....++|+.+.+||++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~tG~~~~vdgG~~ 249 (257)
T 1fjh_A 202 YGESIAKFVPPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGGID 249 (257)
T ss_dssp -------CCCSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTTHH
T ss_pred HHHHHHhcccccCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECCCcc
Confidence 1233457799999999999998877899999999999863
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=260.82 Aligned_cols=238 Identities=11% Similarity=0.035 Sum_probs=187.1
Q ss_pred ccCcEEEEecCCCchhHH--HHHHHHhcCCCcEEEEeecCCCccc------------ccccccccCCCceeEEEeeCCCh
Q 023441 26 WKGGVSLVQGASRGIGLE--FAKQLLEKNDKGCVIATCRNPNGAT------------GLLDLKNRFPERLDVLQLDLTVE 91 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a--~a~~la~~G~~~~vi~~~r~~~~~~------------~~~~~~~~~~~~v~~~~~Dls~~ 91 (282)
..||++|||||++|||++ +++.|+++|++ |++++|+..... .+.+.....+.++.+++||++|+
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~--Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~ 135 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAH--TIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSN 135 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCE--EEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCE--EEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCH
Confidence 679999999999999999 99999999988 999999776532 23344455677899999999999
Q ss_pred hHHHHHHHHHHHHcCCccEEEECcccCCC--CC-------CCCCc------------------ccccccchhhhhhhhhh
Q 023441 92 STIEASAKSIKEKYGSLNLLINASGILSI--PN-------VLQPE------------------TTLNKVEKSSLMLAYEV 144 (282)
Q Consensus 92 ~~~~~~~~~~~~~~~~id~lv~~ag~~~~--~~-------~~~~~------------------~~~~~~~~~~~~~~~~~ 144 (282)
++++++++.+.+++|+||+||||||.... |+ ...+. ..+.+.+.++|+.++++
T Consensus 136 ~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~v 215 (418)
T 4eue_A 136 ETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKV 215 (418)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence 99999999999999999999999997410 00 00011 01245688999999999
Q ss_pred hhcHHH-HHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCCCc--ccchhhHHHHHHHHHHHHHHhcc-CCCCe
Q 023441 145 NAVGPI-LVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGW--HSYRASKAALNQLTKSVSVEFGR-KKDPV 220 (282)
Q Consensus 145 n~~~~~-~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~--~~Y~~sKa~~~~l~~~la~e~~~-~~~~i 220 (282)
|..+.| .+++.+.+.+...+. ++||++||..+..+ .+.+ ..|++||+++++|+++|+.|+++ + +|
T Consensus 216 n~~~~~~~~~~~l~~~~~~~~g------g~IV~iSSi~~~~~---~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~--GI 284 (418)
T 4eue_A 216 MGGEDWQEWCEELLYEDCFSDK------ATTIAYSYIGSPRT---YKIYREGTIGIAKKDLEDKAKLINEKLNRVI--GG 284 (418)
T ss_dssp HSSHHHHHHHHHHHHTTCEEEE------EEEEEEECCCCGGG---TTTTTTSHHHHHHHHHHHHHHHHHHHHHHHH--SC
T ss_pred hhHHHHHHHHHHHHHHhhhcCC------cEEEEEeCchhcCC---CCccccHHHHHHHHHHHHHHHHHHHHhCCcc--Ce
Confidence 999988 677776654332222 49999999988776 5666 89999999999999999999999 8 89
Q ss_pred EEEEEecccccCCCCcccccC--------CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 221 ICILLHPGTVDTDLSRPFQRN--------VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 221 ~v~~i~Pg~v~t~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
+||+|+||++.|++....... .+....-.||++++++.+++++ ...+|..+.+|++
T Consensus 285 rVN~V~PG~v~T~~s~~ip~~p~y~~~~~~~mk~~G~~E~v~e~~~~L~sd--~~~~g~~~~~D~~ 348 (418)
T 4eue_A 285 RAFVSVNKALVTKASAYIPTFPLYAAILYKVMKEKNIHENCIMQIERMFSE--KIYSNEKIQFDDK 348 (418)
T ss_dssp EEEEEECCCCCCHHHHTSTTHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH--TTSSSSCCCCCTT
T ss_pred EEEEEECCcCcChhhhcCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHhhc--cccCCCccccCCC
Confidence 999999999999976543211 1123445899999999999987 4456787777764
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-31 Score=219.71 Aligned_cols=200 Identities=14% Similarity=0.136 Sum_probs=169.2
Q ss_pred Cc-EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 28 GG-VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 28 gk-~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+| ++|||||++|||++++++|+ +|++ |++++|+.+ ++.+|++|+++++++++++ +
T Consensus 2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~--V~~~~r~~~-----------------~~~~D~~~~~~~~~~~~~~----~ 57 (202)
T 3d7l_A 2 NAMKILLIGASGTLGSAVKERLE-KKAE--VITAGRHSG-----------------DVTVDITNIDSIKKMYEQV----G 57 (202)
T ss_dssp CSCEEEEETTTSHHHHHHHHHHT-TTSE--EEEEESSSS-----------------SEECCTTCHHHHHHHHHHH----C
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH-CCCe--EEEEecCcc-----------------ceeeecCCHHHHHHHHHHh----C
Confidence 45 79999999999999999999 9987 999999764 4789999999999988765 7
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++|||||... ..+..+.+.++|++.+++|+.+++++++.+.+.+.+. ++||++||..+..+
T Consensus 58 ~~d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--------~~iv~~sS~~~~~~- 121 (202)
T 3d7l_A 58 KVDAIVSATGSAT-------FSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK--------GSFTLTTGIMMEDP- 121 (202)
T ss_dssp CEEEEEECCCCCC-------CCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE--------EEEEEECCGGGTSC-
T ss_pred CCCEEEECCCCCC-------CCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC--------CEEEEEcchhhcCC-
Confidence 8999999999864 4556677889999999999999999999999988642 38999999887655
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhcCC
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIKS 266 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 266 (282)
.+....|+++|++++.+++.++.|+ +. ++++++++||++.|++... .+..+.....+++++|+.++.++. .
T Consensus 122 --~~~~~~Y~~sK~~~~~~~~~~~~e~-~~--gi~v~~v~pg~v~~~~~~~-~~~~~~~~~~~~~dva~~~~~~~~---~ 192 (202)
T 3d7l_A 122 --IVQGASAAMANGAVTAFAKSAAIEM-PR--GIRINTVSPNVLEESWDKL-EPFFEGFLPVPAAKVARAFEKSVF---G 192 (202)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHTTSC-ST--TCEEEEEEECCBGGGHHHH-GGGSTTCCCBCHHHHHHHHHHHHH---S
T ss_pred --CCccHHHHHHHHHHHHHHHHHHHHc-cC--CeEEEEEecCccCCchhhh-hhhccccCCCCHHHHHHHHHHhhh---c
Confidence 5677899999999999999999998 65 8999999999999987432 222344567799999999888773 5
Q ss_pred CCCCceeecC
Q 023441 267 HDNGKFFAWD 276 (282)
Q Consensus 267 ~~~g~~~~~d 276 (282)
..+|+.+.+|
T Consensus 193 ~~~G~~~~vd 202 (202)
T 3d7l_A 193 AQTGESYQVY 202 (202)
T ss_dssp CCCSCEEEEC
T ss_pred cccCceEecC
Confidence 6789888765
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-32 Score=271.13 Aligned_cols=237 Identities=20% Similarity=0.211 Sum_probs=191.8
Q ss_pred ccccccccCcEEEEecCCCc-hhHHHHHHHHhcCCCcEEEEe-ecCCCccccccccc-c---cCCCceeEEEeeCCChhH
Q 023441 20 ASASVKWKGGVSLVQGASRG-IGLEFAKQLLEKNDKGCVIAT-CRNPNGATGLLDLK-N---RFPERLDVLQLDLTVEST 93 (282)
Q Consensus 20 ~~~~~~~~gk~vlItGas~g-iG~a~a~~la~~G~~~~vi~~-~r~~~~~~~~~~~~-~---~~~~~v~~~~~Dls~~~~ 93 (282)
....|+++||++|||||++| ||+++|++|+++|++ |+++ +|+.+..+...+.+ . ..+.++.+++||++|.++
T Consensus 468 a~~~msL~GKvALVTGASgGGIGrAIAr~LA~~GA~--VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~es 545 (1688)
T 2pff_A 468 XXXXVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAK--VVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQD 545 (1688)
T ss_dssp SSSCCCCCSCCEEECSCSSSSTHHHHHHHHHHHTCE--EEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTH
T ss_pred cccccccCCCEEEEECCChHHHHHHHHHHHHHCcCE--EEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHH
Confidence 34557889999999999998 999999999999987 7777 67776665543322 2 225689999999999999
Q ss_pred HHHHHHHHHHH-----cC-CccEEEECcccCCCCCCCCCcc-cccccc--hhhhhhhhhhhhcHHHHHHHHh--hhhhhc
Q 023441 94 IEASAKSIKEK-----YG-SLNLLINASGILSIPNVLQPET-TLNKVE--KSSLMLAYEVNAVGPILVIKHM--SPLLKV 162 (282)
Q Consensus 94 ~~~~~~~~~~~-----~~-~id~lv~~ag~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~n~~~~~~~~~~~--~~~l~~ 162 (282)
++++++++.++ +| ++|+||||||+.. .. ++.+.+ .+.|++.+++|+.+++.+++.+ .|.|.+
T Consensus 546 VeaLVe~I~e~~~~~GfG~~IDILVNNAGI~~-------~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~k 618 (1688)
T 2pff_A 546 VEALIEFIYDTEKNGGLGWDLDAIIPFAAIPE-------QGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIET 618 (1688)
T ss_dssp HHHHHHHHHSCTTSSSCCCCCCEEECCCCCCC-------CSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhccccccCCCCeEEEECCCcCC-------CCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHh
Confidence 99999999998 77 9999999999874 33 556666 7899999999999999999998 778876
Q ss_pred CCCCCccceeEEEEeeccccccCCCCCCCcccchhhHHHHHHH-HHHHHHHhccCCCCeEEEEEeccccc-CCCCccc--
Q 023441 163 GGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL-TKSVSVEFGRKKDPVICILLHPGTVD-TDLSRPF-- 238 (282)
Q Consensus 163 ~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l-~~~la~e~~~~~~~i~v~~i~Pg~v~-t~~~~~~-- 238 (282)
++. ++||++||..+..+ +...|++||+++++| ++.++.++++. |+||+|+||+++ |++....
T Consensus 619 rgg------GrIVnISSiAG~~G-----g~saYaASKAAL~aLttrsLAeEla~~---IRVNaVaPG~V~TT~M~~~~e~ 684 (1688)
T 2pff_A 619 RPA------QVILPMSPNHGTFG-----GDGMYSESKLSLETLFNRWHSESWANQ---LTVCGAIIGWTRGTGLMSANNI 684 (1688)
T ss_dssp SCE------EECCCCCSCTTTSS-----CBTTHHHHHHHHTHHHHHTTTSSCTTT---EECCCCCCCCCCCCSSSCTTTT
T ss_pred CCC------CEEEEEEChHhccC-----CchHHHHHHHHHHHHHHHHHHHHcCCC---eEEEEEEECcCcCCcccCCchH
Confidence 654 39999999988754 457899999999999 78888888764 999999999999 7875421
Q ss_pred ----ccCCCCCCCCChHHHHHHHHHHHhhc-CCCCCCceeecC--Cccc
Q 023441 239 ----QRNVPEGKLFTKEFSVQKLLNIINNI-KSHDNGKFFAWD--GQEI 280 (282)
Q Consensus 239 ----~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~g~~~~~d--~~~~ 280 (282)
....+. ...+|+++|+.+++++++. ...++|+.+.+| |++.
T Consensus 685 ~~~~l~~ipl-R~~sPEEVA~aIlFLaSd~sAs~ITGq~I~VDVDGG~~ 732 (1688)
T 2pff_A 685 IAEGIEKMGV-RTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQ 732 (1688)
T ss_dssp CSTTTSSSSC-CCCCCCTTHHHHHHHTSTTHHHHHTTSCCCCCCSCSGG
T ss_pred HHHHHHhCCC-CCCCHHHHHHHHHHHhCCCccccccCcEEEEEcCCCee
Confidence 111121 4458999999999999876 467899998765 7753
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-32 Score=275.49 Aligned_cols=236 Identities=19% Similarity=0.206 Sum_probs=189.4
Q ss_pred cccccccCcEEEEecCCCc-hhHHHHHHHHhcCCCcEEEEe-ecCCCcccccccc----cccCCCceeEEEeeCCChhHH
Q 023441 21 SASVKWKGGVSLVQGASRG-IGLEFAKQLLEKNDKGCVIAT-CRNPNGATGLLDL----KNRFPERLDVLQLDLTVESTI 94 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~g-iG~a~a~~la~~G~~~~vi~~-~r~~~~~~~~~~~----~~~~~~~v~~~~~Dls~~~~~ 94 (282)
...|+++||++|||||++| ||+++|++|+++|++ |+++ +|+.++.+...+. ....+.++.+++||++|.+++
T Consensus 668 ~~~m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~--Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV 745 (1887)
T 2uv8_A 668 FNGVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAK--VVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDV 745 (1887)
T ss_dssp HTCBCCTTCEEEEESCCSSSHHHHHHHHHHHTTCE--EEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHH
T ss_pred cccCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCE--EEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHH
Confidence 3456789999999999998 999999999999987 8887 5776665443222 223356899999999999999
Q ss_pred HHHHHHHHHH-----cC-CccEEEECcccCCCCCCCCCcc-cccccc--hhhhhhhhhhhhcHHHHHHHHh--hhhhhcC
Q 023441 95 EASAKSIKEK-----YG-SLNLLINASGILSIPNVLQPET-TLNKVE--KSSLMLAYEVNAVGPILVIKHM--SPLLKVG 163 (282)
Q Consensus 95 ~~~~~~~~~~-----~~-~id~lv~~ag~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~n~~~~~~~~~~~--~~~l~~~ 163 (282)
+++++++.+. +| +||+||||||+.. .. ++.+.+ .+.|++.+++|+.+++.+++.+ .|.|.++
T Consensus 746 ~alv~~i~~~~~~~G~G~~LDiLVNNAGi~~-------~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~ 818 (1887)
T 2uv8_A 746 EALIEFIYDTEKNGGLGWDLDAIIPFAAIPE-------QGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETR 818 (1887)
T ss_dssp HHHHHHHHSCTTTTSCCCCCSEEEECCCCCC-------CSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSC
T ss_pred HHHHHHHHHhccccccCCCCeEEEECCCcCC-------CCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhC
Confidence 9999999998 66 9999999999874 34 566676 7899999999999999999988 7888766
Q ss_pred CCCCccceeEEEEeeccccccCCCCCCCcccchhhHHHHHHH-HHHHHHHhccCCCCeEEEEEeccccc-CCCCccc---
Q 023441 164 GTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL-TKSVSVEFGRKKDPVICILLHPGTVD-TDLSRPF--- 238 (282)
Q Consensus 164 ~~g~~~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l-~~~la~e~~~~~~~i~v~~i~Pg~v~-t~~~~~~--- 238 (282)
+. ++||++||..+..+ +...|++||+++.+| ++.++.++++. |+||+|+||+++ |++....
T Consensus 819 ~~------G~IVnISS~ag~~g-----g~~aYaASKAAL~~Lttr~lA~ela~~---IrVNaV~PG~V~tT~m~~~~~~~ 884 (1887)
T 2uv8_A 819 PA------QVILPMSPNHGTFG-----GDGMYSESKLSLETLFNRWHSESWANQ---LTVCGAIIGWTRGTGLMSANNII 884 (1887)
T ss_dssp CE------EEEEEECSCTTCSS-----CBTTHHHHHHHGGGHHHHHHHSSCTTT---EEEEEEEECCEECC-----CCTT
T ss_pred CC------CEEEEEcChHhccC-----CCchHHHHHHHHHHHHHHHHHHHhCCC---eEEEEEEecccccccccccchhH
Confidence 54 39999999988755 457899999999999 89999998764 999999999999 7875421
Q ss_pred ---ccCCCCCCCCChHHHHHHHHHHHhhc-CCCCCCceeec--CCccc
Q 023441 239 ---QRNVPEGKLFTKEFSVQKLLNIINNI-KSHDNGKFFAW--DGQEI 280 (282)
Q Consensus 239 ---~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~g~~~~~--d~~~~ 280 (282)
....+. ...+|+++|..+++++++. ...++|+.+.+ |||+.
T Consensus 885 ~~~~~~~pl-r~~sPEEVA~avlfLaSd~~as~iTGq~I~VDVDGG~~ 931 (1887)
T 2uv8_A 885 AEGIEKMGV-RTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQ 931 (1887)
T ss_dssp HHHHHTTSC-CCEEHHHHHHHHHGGGSHHHHHHHHHSCEEEEESCSTT
T ss_pred HHHHHhcCC-CCCCHHHHHHHHHHHhCCCccccccCcEEEEECCCCee
Confidence 111222 4558999999999999876 56788998876 48754
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=248.45 Aligned_cols=216 Identities=14% Similarity=0.132 Sum_probs=176.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEe-ecCC-------------CcccccccccccCCCceeEEEeeCCChh
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT-CRNP-------------NGATGLLDLKNRFPERLDVLQLDLTVES 92 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~-~r~~-------------~~~~~~~~~~~~~~~~v~~~~~Dls~~~ 92 (282)
+||+||||||++|||+++|++|+++|++ +|+++ +|+. +..+++.+.+...+.++.+++||++|.+
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~-~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~ 328 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAG-HLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAE 328 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCC-EEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCC-EEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHH
Confidence 5899999999999999999999999987 57777 8884 3334444455555779999999999999
Q ss_pred HHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccce
Q 023441 93 TIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDV 171 (282)
Q Consensus 93 ~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~ 171 (282)
+++++++++. ++++||+||||||+.. ...+.+.+.++|++.+++|+.|++++.+.+.+.+++++ .+
T Consensus 329 ~v~~~~~~i~-~~g~id~vVh~AGv~~-------~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~----- 395 (525)
T 3qp9_A 329 AAARLLAGVS-DAHPLSAVLHLPPTVD-------SEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPP----- 395 (525)
T ss_dssp HHHHHHHTSC-TTSCEEEEEECCCCCC-------CCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCC-----
T ss_pred HHHHHHHHHH-hcCCCcEEEECCcCCC-------CCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC-----
Confidence 9999999998 7899999999999985 56777888999999999999999999999999987764 33
Q ss_pred eEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--cC--CCCCCC
Q 023441 172 AVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--RN--VPEGKL 247 (282)
Q Consensus 172 ~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--~~--~~~~~~ 247 (282)
+||++||..+..+ .++...|+++|+++++|+ .+++.. ++++++|+||+++|+|..... .. ......
T Consensus 396 -~iV~~SS~a~~~g---~~g~~~YaaaKa~l~~lA----~~~~~~--gi~v~sI~pG~~~tgm~~~~~~~~~~~~~g~~~ 465 (525)
T 3qp9_A 396 -VLVLFSSVAAIWG---GAGQGAYAAGTAFLDALA----GQHRAD--GPTVTSVAWSPWEGSRVTEGATGERLRRLGLRP 465 (525)
T ss_dssp -EEEEEEEGGGTTC---CTTCHHHHHHHHHHHHHH----TSCCSS--CCEEEEEEECCBTTSGGGSSHHHHHHHHTTBCC
T ss_pred -EEEEECCHHHcCC---CCCCHHHHHHHHHHHHHH----HHHHhC--CCCEEEEECCccccccccchhhHHHHHhcCCCC
Confidence 9999999999888 677899999999999875 466666 899999999999999873211 00 011234
Q ss_pred CChHHHHHHHHHHHhhcCC
Q 023441 248 FTKEFSVQKLLNIINNIKS 266 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~ 266 (282)
++|+++++.+..++.....
T Consensus 466 l~pee~a~~l~~~l~~~~~ 484 (525)
T 3qp9_A 466 LAPATALTALDTALGHGDT 484 (525)
T ss_dssp BCHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHhCCCC
Confidence 6999999999999987543
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-31 Score=216.16 Aligned_cols=200 Identities=22% Similarity=0.268 Sum_probs=163.2
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|++|||||++|||++++++|+++ + |++++|+.++.+...+.+. . .++++|++|++++++++++ ++++
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~--V~~~~r~~~~~~~~~~~~~---~--~~~~~D~~~~~~~~~~~~~----~~~i 67 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--D--LLLSGRRAGALAELAREVG---A--RALPADLADELEAKALLEE----AGPL 67 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--E--EEEECSCHHHHHHHHHHHT---C--EECCCCTTSHHHHHHHHHH----HCSE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--C--EEEEECCHHHHHHHHHhcc---C--cEEEeeCCCHHHHHHHHHh----cCCC
Confidence 68999999999999999999998 5 9999998776655443332 1 8889999999999999887 6899
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|++|||||... ..+..+.+.+++++.+++|+.+++++++.+. +++ .++||++||..+..+
T Consensus 68 d~vi~~ag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~------~~~iv~~sS~~~~~~--- 127 (207)
T 2yut_A 68 DLLVHAVGKAG-------RASVREAGRDLVEEMLAAHLLTAAFVLKHAR----FQK------GARAVFFGAYPRYVQ--- 127 (207)
T ss_dssp EEEEECCCCCC-------CBCSCC---CHHHHHHHHHHHHHHHHHHHCC----EEE------EEEEEEECCCHHHHS---
T ss_pred CEEEECCCcCC-------CCChhhCCHHHHHHHHHHHhHHHHHHHHHHH----hcC------CcEEEEEcChhhccC---
Confidence 99999999874 4556667788999999999999999999982 222 249999999987765
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhcC
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 265 (282)
.++...|+++|++++.+++.++.++++. ++++++++||++.|++.... ..+.....+|+++|+.+++++....
T Consensus 128 ~~~~~~Y~~sK~a~~~~~~~~~~~~~~~--gi~v~~v~pg~v~t~~~~~~--~~~~~~~~~~~dva~~~~~~~~~~~ 200 (207)
T 2yut_A 128 VPGFAAYAAAKGALEAYLEAARKELLRE--GVHLVLVRLPAVATGLWAPL--GGPPKGALSPEEAARKVLEGLFREP 200 (207)
T ss_dssp STTBHHHHHHHHHHHHHHHHHHHHHHTT--TCEEEEECCCCBCSGGGGGG--TSCCTTCBCHHHHHHHHHHHHC--C
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhh--CCEEEEEecCcccCCCcccc--CCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 5667899999999999999999999887 89999999999999974431 2234567899999999999997654
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-31 Score=266.06 Aligned_cols=236 Identities=20% Similarity=0.196 Sum_probs=189.7
Q ss_pred cccccccCcEEEEecCCCc-hhHHHHHHHHhcCCCcEEEEee-cCCCcccccc----cccccCCCceeEEEeeCCChhHH
Q 023441 21 SASVKWKGGVSLVQGASRG-IGLEFAKQLLEKNDKGCVIATC-RNPNGATGLL----DLKNRFPERLDVLQLDLTVESTI 94 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~g-iG~a~a~~la~~G~~~~vi~~~-r~~~~~~~~~----~~~~~~~~~v~~~~~Dls~~~~~ 94 (282)
...|+++||++|||||++| ||+++|++|+++|++ |++++ |+.+..+... +.+...+.++.+++||++|.+++
T Consensus 645 ~~~m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~--VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV 722 (1878)
T 2uv9_A 645 RSGLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAK--VIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDV 722 (1878)
T ss_dssp HHCBCCTTCEEEEESCCTTSHHHHHHHHHHHTTCE--EEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHH
T ss_pred ccCCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCE--EEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHH
Confidence 3456789999999999999 999999999999987 88874 6655543322 22333356899999999999999
Q ss_pred HHHHHHHHHH---cC-CccEEEECcccCCCCCCCCCcc-cccccc--hhhhhhhhhhhhcHHHHHHHH--hhhhhhcCCC
Q 023441 95 EASAKSIKEK---YG-SLNLLINASGILSIPNVLQPET-TLNKVE--KSSLMLAYEVNAVGPILVIKH--MSPLLKVGGT 165 (282)
Q Consensus 95 ~~~~~~~~~~---~~-~id~lv~~ag~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~n~~~~~~~~~~--~~~~l~~~~~ 165 (282)
+++++++.+. +| +||+||||||+.. .. ++.+.+ .+.|++.+++|+.+++.+++. +.+.|.+++.
T Consensus 723 ~alv~~i~~~~~~~G~~IDiLVnNAGi~~-------~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~ 795 (1878)
T 2uv9_A 723 EALVNYIYDTKNGLGWDLDYVVPFAAIPE-------NGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPA 795 (1878)
T ss_dssp HHHHHHHHCSSSSCCCCCSEEEECCCCCC-------TTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCE
T ss_pred HHHHHHHHHhhcccCCCCcEEEeCccccc-------CCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCC
Confidence 9999999998 99 9999999999874 33 566676 789999999999999999977 6677766543
Q ss_pred CCccceeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHH-hccCCCCeEEEEEeccccc-CCCCcc------
Q 023441 166 GIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVE-FGRKKDPVICILLHPGTVD-TDLSRP------ 237 (282)
Q Consensus 166 g~~~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e-~~~~~~~i~v~~i~Pg~v~-t~~~~~------ 237 (282)
++||++||..+..+ +...|++||+++++|++.++.+ +++ +|+||+|+||+++ |++...
T Consensus 796 ------G~IVnISS~ag~~g-----g~~aYaASKAAL~aLt~~laAeEla~---~IrVNaVaPG~V~gT~m~~~~~~~~~ 861 (1878)
T 2uv9_A 796 ------QVILPLSPNHGTFG-----NDGLYSESKLALETLFNRWYSESWGN---YLTICGAVIGWTRGTGLMSANNLVAE 861 (1878)
T ss_dssp ------EECCEECSCSSSSS-----CCSSHHHHHHHHTTHHHHHHHSTTTT---TEEEEEEEECCBCCTTSCSHHHHTHH
T ss_pred ------CEEEEEcchhhccC-----CchHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEEecceecCcccccchhhHH
Confidence 39999999988765 3568999999999998876554 655 3999999999999 998653
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHhhcC-CCCCCceeec--CCccc
Q 023441 238 FQRNVPEGKLFTKEFSVQKLLNIINNIK-SHDNGKFFAW--DGQEI 280 (282)
Q Consensus 238 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~g~~~~~--d~~~~ 280 (282)
.....+. ...+|+++|..+++++++.. ..++|+.+.+ |||+.
T Consensus 862 ~~~~~pl-r~~sPeEVA~avlfLaSd~a~s~iTGq~I~VDVDGG~~ 906 (1878)
T 2uv9_A 862 GVEKLGV-RTFSQQEMAFNLLGLMAPAIVNLCQSDPVFADLNGGLQ 906 (1878)
T ss_dssp HHHTTTC-CCBCHHHHHHHHHHHHSHHHHHHHTTSCEEEEESCSGG
T ss_pred HHHhcCC-CCCCHHHHHHHHHHHhCCcccccccCcEEEEEcCCCcc
Confidence 1112222 45599999999999998765 6889998876 58754
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=218.98 Aligned_cols=211 Identities=19% Similarity=0.208 Sum_probs=172.8
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|++|||||++|||++++++|+++|++ |++++|+.++.+. .+.+|++|.++++++++++ .+++
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~-------------~~~~D~~~~~~~~~~~~~~---~~~~ 63 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHT--VIGIDRGQADIEA-------------DLSTPGGRETAVAAVLDRC---GGVL 63 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSSSSEEC-------------CTTSHHHHHHHHHHHHHHH---TTCC
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCE--EEEEeCChhHccc-------------cccCCcccHHHHHHHHHHc---CCCc
Confidence 68999999999999999999999987 9999998766431 1568999999998888754 3689
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|+||||||... . .+.++..+++|+.+++++++.+.+.|.+++.+ ++|++||..+..+...
T Consensus 64 d~vi~~Ag~~~-------~-------~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~------~iv~~sS~~~~~~~~~ 123 (255)
T 2dkn_A 64 DGLVCCAGVGV-------T-------AANSGLVVAVNYFGVSALLDGLAEALSRGQQP------AAVIVGSIAATQPGAA 123 (255)
T ss_dssp SEEEECCCCCT-------T-------SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSC------EEEEECCGGGGSTTGG
T ss_pred cEEEECCCCCC-------c-------chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCc------eEEEEecccccccccc
Confidence 99999999763 1 13478899999999999999999999876544 9999999887654200
Q ss_pred -----------------------CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-c----
Q 023441 189 -----------------------LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-R---- 240 (282)
Q Consensus 189 -----------------------~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-~---- 240 (282)
.+....|+++|++++.+++.++.++++. ++++++++||++.|++..... .
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~--gi~v~~v~pg~v~~~~~~~~~~~~~~~ 201 (255)
T 2dkn_A 124 ELPMVEAMLAGDEARAIELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGR--GVRLNVVAPGAVETPLLQASKADPRYG 201 (255)
T ss_dssp GCHHHHHHHHTCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHT--TCEEEEEEECCBCSHHHHHHHHCTTTH
T ss_pred ccchhhhhcccchhhhhhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhc--CcEEEEEcCCcccchhhhhcccchhhH
Confidence 1356789999999999999999999877 899999999999998754320 0
Q ss_pred ----CC--CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 241 ----NV--PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 241 ----~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.. +.....+++++|+.++++++......+|+.+.+++++
T Consensus 202 ~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 246 (255)
T 2dkn_A 202 ESTRRFVAPLGRGSEPREVAEAIAFLLGPQASFIHGSVLFVDGGM 246 (255)
T ss_dssp HHHHSCCCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCcccceeeEEEecCCe
Confidence 11 4446789999999999999876668899999999875
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=231.71 Aligned_cols=214 Identities=17% Similarity=0.173 Sum_probs=170.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc---ccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG---ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~---~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.||+||||||++|||+++|++|+++|+. +|++++|+... .+++.+.+...+.++.++.||++|.++++++++++.+
T Consensus 238 ~~~~vLITGgsgGIG~alA~~La~~Ga~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~ 316 (496)
T 3mje_A 238 VHGSVLVTGGTGGIGGRVARRLAEQGAA-HLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPE 316 (496)
T ss_dssp CCSEEEEETCSSHHHHHHHHHHHHTTCS-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCT
T ss_pred CCCEEEEECCCCchHHHHHHHHHHCCCc-EEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 3599999999999999999999999985 58899997543 3334455556678999999999999999999999887
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
. +++|+||||||+.. ...++.+.+.++|++.+++|+.+.+++.+.+.+... .+||++||..+.
T Consensus 317 ~-g~ld~vVh~AGv~~------~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~----------~~iV~~SS~a~~ 379 (496)
T 3mje_A 317 D-APLTAVFHSAGVAH------DDAPVADLTLGQLDALMRAKLTAARHLHELTADLDL----------DAFVLFSSGAAV 379 (496)
T ss_dssp T-SCEEEEEECCCCCC------SCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCC----------SEEEEEEEHHHH
T ss_pred h-CCCeEEEECCcccC------CCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCC----------CEEEEEeChHhc
Confidence 7 78999999999972 156677888999999999999999999998877532 289999999998
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---CC--CCCCCCChHHHHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR---NV--PEGKLFTKEFSVQKLL 258 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---~~--~~~~~~~~~~~a~~~~ 258 (282)
.+ .++...|+++|++++.|++.++ .. ++++++|+||++.+........ .. .....++|+++++.+.
T Consensus 380 ~g---~~g~~~YaAaKa~ldala~~~~----~~--Gi~v~sV~pG~w~~~gm~~~~~~~~~l~~~g~~~l~pe~~~~~l~ 450 (496)
T 3mje_A 380 WG---SGGQPGYAAANAYLDALAEHRR----SL--GLTASSVAWGTWGEVGMATDPEVHDRLVRQGVLAMEPEHALGALD 450 (496)
T ss_dssp TT---CTTCHHHHHHHHHHHHHHHHHH----HT--TCCCEEEEECEESSSCC------CHHHHHTTEEEECHHHHHHHHH
T ss_pred CC---CCCcHHHHHHHHHHHHHHHHHH----hc--CCeEEEEECCcccCCccccChHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 87 6778899999999999888654 34 8999999999886654322110 00 0112368999999999
Q ss_pred HHHhhcCCC
Q 023441 259 NIINNIKSH 267 (282)
Q Consensus 259 ~~~~~~~~~ 267 (282)
.++......
T Consensus 451 ~~l~~~~~~ 459 (496)
T 3mje_A 451 QMLENDDTA 459 (496)
T ss_dssp HHHHHTCSE
T ss_pred HHHcCCCce
Confidence 999875533
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-28 Score=236.61 Aligned_cols=211 Identities=16% Similarity=0.228 Sum_probs=173.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHH-hcCCCcEEEEeecCCC---cccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLL-EKNDKGCVIATCRNPN---GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la-~~G~~~~vi~~~r~~~---~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+|++|||||++|||+++|++|+ ++|++ +|++.+|+.. ..++..+.+...+.++.+++||++|.++++++++++.
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~-~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~ 607 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVR-NLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIP 607 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCC-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCc-EEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 58999999999999999999999 79985 5999999843 3444455555667899999999999999999999998
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+++ +||+||||||+.. ..++.+.+.++|++.+++|+.|++++.+++.+.| +||++||..+
T Consensus 608 ~~~-~id~lVnnAGv~~-------~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l------------~iV~~SS~ag 667 (795)
T 3slk_A 608 DEH-PLTAVVHAAGVLD-------DGVSESLTVERLDQVLRPKVDGARNLLELIDPDV------------ALVLFSSVSG 667 (795)
T ss_dssp TTS-CEEEEEECCCCCC-------CCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTS------------EEEEEEETHH
T ss_pred HhC-CCEEEEECCCcCC-------CCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCC------------EEEEEccHHh
Confidence 886 8999999999985 5678889999999999999999999999997766 7999999999
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-cc------CCCCCCCCChHHHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-QR------NVPEGKLFTKEFSVQ 255 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-~~------~~~~~~~~~~~~~a~ 255 (282)
..+ .++...|+++|+ |++++++++++. ++++++|+||++.|...... .. .......+++++...
T Consensus 668 ~~g---~~g~~~YaAaka----~~~alA~~~~~~--Gi~v~sI~pG~v~t~g~~~~~~~~~~~~~~~~g~~~l~~~e~~~ 738 (795)
T 3slk_A 668 VLG---SGGQGNYAAANS----FLDALAQQRQSR--GLPTRSLAWGPWAEHGMASTLREAEQDRLARSGLLPISTEEGLS 738 (795)
T ss_dssp HHT---CSSCHHHHHHHH----HHHHHHHHHHHT--TCCEEEEEECCCSCCCHHHHHHHHHHHHHHHTTBCCCCHHHHHH
T ss_pred cCC---CCCCHHHHHHHH----HHHHHHHHHHHc--CCeEEEEECCeECcchhhccccHHHHHHHHhcCCCCCCHHHHHH
Confidence 888 678899999996 555666666666 89999999999998753211 00 011123468889888
Q ss_pred HHHHHHhhcCCC
Q 023441 256 KLLNIINNIKSH 267 (282)
Q Consensus 256 ~~~~~~~~~~~~ 267 (282)
.+...+......
T Consensus 739 ~~~~~l~~~~~~ 750 (795)
T 3slk_A 739 QFDAACGGAHTV 750 (795)
T ss_dssp HHHHHHTSSCSS
T ss_pred HHHHHHhCCCcE
Confidence 888888765443
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-28 Score=255.75 Aligned_cols=239 Identities=21% Similarity=0.174 Sum_probs=177.6
Q ss_pred cccCcEEEEecCCCc-hhHHHHHHHHhcCCCcEEEEeecCCCc-----ccccccccccCCCceeEEEeeCCChhHHHHHH
Q 023441 25 KWKGGVSLVQGASRG-IGLEFAKQLLEKNDKGCVIATCRNPNG-----ATGLLDLKNRFPERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 25 ~~~gk~vlItGas~g-iG~a~a~~la~~G~~~~vi~~~r~~~~-----~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~ 98 (282)
.++||++|||||++| ||+++|+.|+++|++ |++++|+.+. ++++.+.+...+.++..++||++|.+++++++
T Consensus 2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~--Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv 2210 (3089)
T 3zen_D 2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGAT--VIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLV 2210 (3089)
T ss_dssp CCCCCEEEEESCCTTSHHHHHHHHHHHTTCE--EEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHHCCCE--EEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHH
Confidence 489999999999999 999999999999998 9999999876 45555555555678999999999999999999
Q ss_pred HHHHH----HcCCccEEEECcccCC--CCCCCCCcccccccchhhhhhh----hhhhhcHHHHHHHHhhhhhhcCCCCCc
Q 023441 99 KSIKE----KYGSLNLLINASGILS--IPNVLQPETTLNKVEKSSLMLA----YEVNAVGPILVIKHMSPLLKVGGTGIE 168 (282)
Q Consensus 99 ~~~~~----~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~n~~~~~~~~~~~~~~l~~~~~g~~ 168 (282)
+++.+ .||++|+||||||+.. .+. .....+.+.++|+.. +++|+.+.+.+++.+.+.|..++.+..
T Consensus 2211 ~~i~~~~~~~fG~IDILVNNAGi~d~~~~~----a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~ 2286 (3089)
T 3zen_D 2211 EWVGTEQTESLGPQSIHLKDAQTPTLLFPF----AAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASR 2286 (3089)
T ss_dssp HHHTSCCEEEESSSEEEECCCCCCSEEEEC----CCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhhhhhhcCCCCEEEECCCcccccCcc----cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCce
Confidence 99998 8999999999999821 000 111122233445444 999999999999999999987654321
Q ss_pred cceeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHH--hccCCCCeEEEEEeccccc-CCCCccccc-----
Q 023441 169 RDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVE--FGRKKDPVICILLHPGTVD-TDLSRPFQR----- 240 (282)
Q Consensus 169 ~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e--~~~~~~~i~v~~i~Pg~v~-t~~~~~~~~----- 240 (282)
...+++.|+..+. .++...|++||+|+.+|+++++.| +++ +|+||+++||+++ |++......
T Consensus 2287 --~~ii~~~ss~~g~-----~g~~~aYsASKaAl~~LtrslA~E~~~a~---~IrVn~v~PG~v~tT~l~~~~~~~~~~~ 2356 (3089)
T 3zen_D 2287 --LHVVLPGSPNRGM-----FGGDGAYGEAKSALDALENRWSAEKSWAE---RVSLAHALIGWTKGTGLMGQNDAIVSAV 2356 (3089)
T ss_dssp --EEEEEEECSSTTS-----CSSCSSHHHHGGGHHHHHHHHHHCSTTTT---TEEEEEEECCCEECSTTTTTTTTTHHHH
T ss_pred --eEEEEECCccccc-----CCCchHHHHHHHHHHHHHHHHHhccccCC---CeEEEEEeecccCCCcccccchhHHHHH
Confidence 2345555554433 234568999999999999999999 654 6999999999998 776542110
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCC-CCCceeec--CCcc
Q 023441 241 NVPEGKLFTKEFSVQKLLNIINNIKSH-DNGKFFAW--DGQE 279 (282)
Q Consensus 241 ~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~g~~~~~--d~~~ 279 (282)
.....+..+|+|+|..+++++++.... .+|..+.+ +|+.
T Consensus 2357 ~~~~~r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~ 2398 (3089)
T 3zen_D 2357 EEAGVTTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGL 2398 (3089)
T ss_dssp GGGSCBCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSC
T ss_pred HhcCCCCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCc
Confidence 001123458999999999999876433 34444443 3665
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-27 Score=214.66 Aligned_cols=211 Identities=17% Similarity=0.188 Sum_probs=166.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc---cccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA---TGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~---~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||||||++|||++++++|+++|+. +|++++|+.... +++.+.+...+.++.++.||++|.+++.++++.+ +
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i-~ 302 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGAP-HLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI-G 302 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCS-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS-C
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCC-EEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH-H
Confidence 4799999999999999999999999985 588999987532 3333444555678999999999999999999998 6
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|+||||||+.. ...+.+.+.+.++..+++|+.+++++.+.+.+. +. .+||++||..+.
T Consensus 303 ~~g~ld~VIh~AG~~~-------~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~----~~------~~~V~~SS~a~~ 365 (486)
T 2fr1_A 303 DDVPLSAVFHAAATLD-------DGTVDTLTGERIERASRAKVLGARNLHELTREL----DL------TAFVLFSSFASA 365 (486)
T ss_dssp TTSCEEEEEECCCCCC-------CCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS----CC------SEEEEEEEHHHH
T ss_pred hcCCCcEEEECCccCC-------CCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC----CC------CEEEEEcChHhc
Confidence 6789999999999875 556778889999999999999999999987653 22 299999999888
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC-CCcccc-cCCC--CCCCCChHHHHHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD-LSRPFQ-RNVP--EGKLFTKEFSVQKLLN 259 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~-~~~~~~-~~~~--~~~~~~~~~~a~~~~~ 259 (282)
.+ .++...|+++|++++.|++.++ .. ++++++|+||++.++ |..... .... ....++++++++.+..
T Consensus 366 ~g---~~g~~~Yaaaka~l~~la~~~~----~~--gi~v~~i~pG~~~~~gm~~~~~~~~~~~~g~~~i~~e~~a~~l~~ 436 (486)
T 2fr1_A 366 FG---APGLGGYAPGNAYLDGLAQQRR----SD--GLPATAVAWGTWAGSGMAEGPVADRFRRHGVIEMPPETACRALQN 436 (486)
T ss_dssp TC---CTTCTTTHHHHHHHHHHHHHHH----HT--TCCCEEEEECCBC------------CTTTTEECBCHHHHHHHHHH
T ss_pred CC---CCCCHHHHHHHHHHHHHHHHHH----hc--CCeEEEEECCeeCCCcccchhHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 77 5677899999999998877554 34 789999999999876 433211 1111 1235799999999999
Q ss_pred HHhhcC
Q 023441 260 IINNIK 265 (282)
Q Consensus 260 ~~~~~~ 265 (282)
.+....
T Consensus 437 ~l~~~~ 442 (486)
T 2fr1_A 437 ALDRAE 442 (486)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 998654
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=210.91 Aligned_cols=208 Identities=17% Similarity=0.209 Sum_probs=167.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc---cccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA---TGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~---~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+|+||||||++|||++++++|+++|+. +|++++|+.... +++.+.+...+.++.++.||++|.++++++++.
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~--- 333 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAE-RLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTA--- 333 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCS-EEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHH---
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCc-EEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhc---
Confidence 4799999999999999999999999984 588999987532 334444555577899999999999999999886
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++|+||||||+.. ...+.+.+.+.++..+++|+.+.+++.+.+.+.. +. .+||++||..+.
T Consensus 334 --~~ld~VVh~AGv~~-------~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~---~~------~~~V~~SS~a~~ 395 (511)
T 2z5l_A 334 --YPPNAVFHTAGILD-------DAVIDTLSPESFETVRGAKVCGAELLHQLTADIK---GL------DAFVLFSSVTGT 395 (511)
T ss_dssp --SCCSEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCT---TC------CCEEEEEEGGGT
T ss_pred --CCCcEEEECCcccC-------CcccccCCHHHHHHHHHHHHHHHHHHHHHHhhcc---CC------CEEEEEeCHHhc
Confidence 68999999999875 5667788889999999999999999998875431 12 289999999888
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccc-cCCCCccccc-C--CCCCCCCChHHHHHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTV-DTDLSRPFQR-N--VPEGKLFTKEFSVQKLLN 259 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v-~t~~~~~~~~-~--~~~~~~~~~~~~a~~~~~ 259 (282)
.+ .++...|+++|++++.|++.++ .. ++++++|+||++ +|+|...... . ......++|+++++.+..
T Consensus 396 ~g---~~g~~~YaaaKa~ld~la~~~~----~~--gi~v~sv~pG~~~~tgm~~~~~~~~~~~~g~~~l~~e~~a~~l~~ 466 (511)
T 2z5l_A 396 WG---NAGQGAYAAANAALDALAERRR----AA--GLPATSVAWGLWGGGGMAAGAGEESLSRRGLRAMDPDAAVDALLG 466 (511)
T ss_dssp TC---CTTBHHHHHHHHHHHHHHHHHH----TT--TCCCEEEEECCBCSTTCCCCHHHHHHHHHTBCCBCHHHHHHHHHH
T ss_pred CC---CCCCHHHHHHHHHHHHHHHHHH----Hc--CCcEEEEECCcccCCcccccccHHHHHhcCCCCCCHHHHHHHHHH
Confidence 77 5677899999999999988653 33 789999999999 7887654210 0 011235799999999999
Q ss_pred HHhhcC
Q 023441 260 IINNIK 265 (282)
Q Consensus 260 ~~~~~~ 265 (282)
.+....
T Consensus 467 al~~~~ 472 (511)
T 2z5l_A 467 AMGRND 472 (511)
T ss_dssp HHHHTC
T ss_pred HHhCCC
Confidence 997654
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=189.17 Aligned_cols=186 Identities=15% Similarity=0.084 Sum_probs=150.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++|++|||||+|+||++++++|+++|++ |++.+|+..+.. +.++.++.+|++|.+++.++++
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~--V~~~~r~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~------- 63 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEI--LRLADLSPLDPA---------GPNEECVQCDLADANAVNAMVA------- 63 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEE--EEEEESSCCCCC---------CTTEEEEECCTTCHHHHHHHHT-------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCE--EEEEecCCcccc---------CCCCEEEEcCCCCHHHHHHHHc-------
Confidence 4689999999999999999999999987 999999876543 4579999999999999988876
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC-
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG- 185 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~- 185 (282)
++|+||||||... .+.|++.+++|+.+++++++++.+. +. ++||++||..+...
T Consensus 64 ~~D~vi~~Ag~~~---------------~~~~~~~~~~N~~g~~~l~~a~~~~----~~------~~iv~~SS~~~~g~~ 118 (267)
T 3rft_A 64 GCDGIVHLGGISV---------------EKPFEQILQGNIIGLYNLYEAARAH----GQ------PRIVFASSNHTIGYY 118 (267)
T ss_dssp TCSEEEECCSCCS---------------CCCHHHHHHHHTHHHHHHHHHHHHT----TC------CEEEEEEEGGGGTTS
T ss_pred CCCEEEECCCCcC---------------cCCHHHHHHHHHHHHHHHHHHHHHc----CC------CEEEEEcchHHhCCC
Confidence 6899999999842 2457788999999999999998442 22 39999999876521
Q ss_pred --------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHH
Q 023441 186 --------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKL 257 (282)
Q Consensus 186 --------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~ 257 (282)
..+......|+.||++++.+++.++.++ ++++++|.||.+.+++... .....+.+++++++.+
T Consensus 119 ~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~a~~~-----g~~~~~vr~~~v~~~~~~~----~~~~~~~~~~d~a~~~ 189 (267)
T 3rft_A 119 PQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKF-----GQETALVRIGSCTPEPNNY----RMLSTWFSHDDFVSLI 189 (267)
T ss_dssp BTTSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECBCSSSCCST----THHHHBCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-----CCeEEEEEeecccCCCCCC----CceeeEEcHHHHHHHH
Confidence 1233456789999999999999999887 6788888999998875432 1123456899999999
Q ss_pred HHHHhhc
Q 023441 258 LNIINNI 264 (282)
Q Consensus 258 ~~~~~~~ 264 (282)
..++...
T Consensus 190 ~~~~~~~ 196 (267)
T 3rft_A 190 EAVFRAP 196 (267)
T ss_dssp HHHHHCS
T ss_pred HHHHhCC
Confidence 8888754
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=187.49 Aligned_cols=209 Identities=16% Similarity=0.199 Sum_probs=153.9
Q ss_pred ccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCce-eEEEeeCCChhHHHHHH
Q 023441 20 ASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERL-DVLQLDLTVESTIEASA 98 (282)
Q Consensus 20 ~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v-~~~~~Dls~~~~~~~~~ 98 (282)
.....+++||++|||||+|+||++++++|+++|++ |++++|+.++.+.+.. .++ .++.+|++ +
T Consensus 13 ~~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~--V~~~~R~~~~~~~~~~------~~~~~~~~~Dl~--~------ 76 (236)
T 3e8x_A 13 GRENLYFQGMRVLVVGANGKVARYLLSELKNKGHE--PVAMVRNEEQGPELRE------RGASDIVVANLE--E------ 76 (236)
T ss_dssp --------CCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSGGGHHHHHH------TTCSEEEECCTT--S------
T ss_pred cccccCcCCCeEEEECCCChHHHHHHHHHHhCCCe--EEEEECChHHHHHHHh------CCCceEEEcccH--H------
Confidence 34557889999999999999999999999999987 9999999876543322 267 89999999 2
Q ss_pred HHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 99 KSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
.+.+.++++|+||||||... .+.++..+++|+.++.++++++... +. ++||++|
T Consensus 77 -~~~~~~~~~D~vi~~ag~~~---------------~~~~~~~~~~n~~~~~~l~~a~~~~----~~------~~iv~~S 130 (236)
T 3e8x_A 77 -DFSHAFASIDAVVFAAGSGP---------------HTGADKTILIDLWGAIKTIQEAEKR----GI------KRFIMVS 130 (236)
T ss_dssp -CCGGGGTTCSEEEECCCCCT---------------TSCHHHHHHTTTHHHHHHHHHHHHH----TC------CEEEEEC
T ss_pred -HHHHHHcCCCEEEECCCCCC---------------CCCccccchhhHHHHHHHHHHHHHc----CC------CEEEEEe
Confidence 33445568999999999763 1457788999999999999998543 22 2899999
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---C-CCCCCCCChHHHH
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR---N-VPEGKLFTKEFSV 254 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---~-~~~~~~~~~~~~a 254 (282)
|..+..+.........|+.+|++++.+.+ .. ++++++++||++.++....... . .......+++++|
T Consensus 131 S~~~~~~~~~~~~~~~Y~~sK~~~e~~~~-------~~--gi~~~~lrpg~v~~~~~~~~~~~~~~~~~~~~~i~~~Dva 201 (236)
T 3e8x_A 131 SVGTVDPDQGPMNMRHYLVAKRLADDELK-------RS--SLDYTIVRPGPLSNEESTGKVTVSPHFSEITRSITRHDVA 201 (236)
T ss_dssp CTTCSCGGGSCGGGHHHHHHHHHHHHHHH-------HS--SSEEEEEEECSEECSCCCSEEEEESSCSCCCCCEEHHHHH
T ss_pred cCCCCCCCCChhhhhhHHHHHHHHHHHHH-------HC--CCCEEEEeCCcccCCCCCCeEEeccCCCcccCcEeHHHHH
Confidence 97665442111356789999999998876 23 8999999999999987543211 1 1125567899999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
+.++.++.... ..|..+.++++.++
T Consensus 202 ~~~~~~~~~~~--~~g~~~~v~~~~~~ 226 (236)
T 3e8x_A 202 KVIAELVDQQH--TIGKTFEVLNGDTP 226 (236)
T ss_dssp HHHHHHTTCGG--GTTEEEEEEECSEE
T ss_pred HHHHHHhcCcc--ccCCeEEEeCCCcC
Confidence 99999997643 67888887666543
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=175.80 Aligned_cols=189 Identities=15% Similarity=0.115 Sum_probs=144.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCC--CcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKND--KGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~--~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
+++++|++|||||+|+||++++++|+++|+ + |++++|+.++.+.... .++.++.+|++|.+++.++++
T Consensus 14 ~~m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~--V~~~~r~~~~~~~~~~------~~~~~~~~D~~d~~~~~~~~~-- 83 (242)
T 2bka_A 14 FRMQNKSVFILGASGETGRVLLKEILEQGLFSK--VTLIGRRKLTFDEEAY------KNVNQEVVDFEKLDDYASAFQ-- 83 (242)
T ss_dssp HHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSE--EEEEESSCCCCCSGGG------GGCEEEECCGGGGGGGGGGGS--
T ss_pred hhhcCCeEEEECCCcHHHHHHHHHHHcCCCCCE--EEEEEcCCCCcccccc------CCceEEecCcCCHHHHHHHhc--
Confidence 346789999999999999999999999998 6 9999998876543211 267899999999998877654
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
++|++|||+|... . ...++..+++|+.++.++++++.+ ++. ++||++||..
T Consensus 84 -----~~d~vi~~ag~~~-------~-------~~~~~~~~~~n~~~~~~~~~~~~~----~~~------~~iv~~SS~~ 134 (242)
T 2bka_A 84 -----GHDVGFCCLGTTR-------G-------KAGAEGFVRVDRDYVLKSAELAKA----GGC------KHFNLLSSKG 134 (242)
T ss_dssp -----SCSEEEECCCCCH-------H-------HHHHHHHHHHHTHHHHHHHHHHHH----TTC------CEEEEECCTT
T ss_pred -----CCCEEEECCCccc-------c-------cCCcccceeeeHHHHHHHHHHHHH----CCC------CEEEEEccCc
Confidence 6999999999752 1 124577899999999999887654 222 2899999987
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCe-EEEEEecccccCCCCccc---------ccCCC----CCCC
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPV-ICILLHPGTVDTDLSRPF---------QRNVP----EGKL 247 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i-~v~~i~Pg~v~t~~~~~~---------~~~~~----~~~~ 247 (282)
+... ....|+++|++++.+++.+ ++ ++++++||++.|+..... ....+ ....
T Consensus 135 ~~~~-----~~~~Y~~sK~~~e~~~~~~---------~~~~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (242)
T 2bka_A 135 ADKS-----SNFLYLQVKGEVEAKVEEL---------KFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHS 200 (242)
T ss_dssp CCTT-----CSSHHHHHHHHHHHHHHTT---------CCSEEEEEECCEEECTTGGGSHHHHHHHHHHCSCCTTGGGGTE
T ss_pred CCCC-----CcchHHHHHHHHHHHHHhc---------CCCCeEEEcCceecCCCCCCcHHHHHHHHhhcccCccccCCcc
Confidence 6532 3357999999999987643 35 799999999999864310 11122 2345
Q ss_pred CChHHHHHHHHHHHhhcC
Q 023441 248 FTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~ 265 (282)
.+++++|+.++++++...
T Consensus 201 ~~~~dva~~~~~~~~~~~ 218 (242)
T 2bka_A 201 VPVVTVVRAMLNNVVRPR 218 (242)
T ss_dssp EEHHHHHHHHHHHHTSCC
T ss_pred cCHHHHHHHHHHHHhCcc
Confidence 689999999999998643
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-23 Score=181.02 Aligned_cols=213 Identities=16% Similarity=0.148 Sum_probs=161.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhc-CC-CcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEK-ND-KGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~-G~-~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..++||++|||||+|+||++++++|+++ |+ + |++.+|++.+...+.+.+. ..++.++.+|++|.+++.++++
T Consensus 17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~--V~~~~r~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~-- 90 (344)
T 2gn4_A 17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKK--IIVYSRDELKQSEMAMEFN--DPRMRFFIGDVRDLERLNYALE-- 90 (344)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSE--EEEEESCHHHHHHHHHHHC--CTTEEEEECCTTCHHHHHHHTT--
T ss_pred HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCE--EEEEECChhhHHHHHHHhc--CCCEEEEECCCCCHHHHHHHHh--
Confidence 3478999999999999999999999999 97 5 9999998766554433332 2579999999999998887764
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
++|+||||||... .+. ......+.+++|+.++.++++++.+... +++|++||..
T Consensus 91 -----~~D~Vih~Aa~~~--------~~~---~~~~~~~~~~~Nv~gt~~l~~aa~~~~v----------~~~V~~SS~~ 144 (344)
T 2gn4_A 91 -----GVDICIHAAALKH--------VPI---AEYNPLECIKTNIMGASNVINACLKNAI----------SQVIALSTDK 144 (344)
T ss_dssp -----TCSEEEECCCCCC--------HHH---HHHSHHHHHHHHHHHHHHHHHHHHHTTC----------SEEEEECCGG
T ss_pred -----cCCEEEECCCCCC--------CCc---hhcCHHHHHHHHHHHHHHHHHHHHhCCC----------CEEEEecCCc
Confidence 6999999999753 111 1233457899999999999999987521 2899999976
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc-------c-------cccC--CCCC
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR-------P-------FQRN--VPEG 245 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~-------~-------~~~~--~~~~ 245 (282)
+.. +...|+++|++++.+++.++.++++. +++++++.||.+.++... . +.-. ....
T Consensus 145 ~~~------p~~~Y~~sK~~~E~~~~~~~~~~~~~--g~~~~~vRpg~v~g~~~~~i~~~~~~~~~g~~~~~i~~~~~~r 216 (344)
T 2gn4_A 145 AAN------PINLYGATKLCSDKLFVSANNFKGSS--QTQFSVVRYGNVVGSRGSVVPFFKKLVQNKASEIPITDIRMTR 216 (344)
T ss_dssp GSS------CCSHHHHHHHHHHHHHHHGGGCCCSS--CCEEEEECCCEETTCTTSHHHHHHHHHHHTCCCEEESCTTCEE
T ss_pred cCC------CccHHHHHHHHHHHHHHHHHHHhCCC--CcEEEEEEeccEECCCCCHHHHHHHHHHcCCCceEEeCCCeEE
Confidence 542 23689999999999999999887766 899999999999886421 0 0000 0112
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.+.+++++++.++.++... ..|..+..++..
T Consensus 217 ~~i~v~D~a~~v~~~l~~~---~~g~~~~~~~~~ 247 (344)
T 2gn4_A 217 FWITLDEGVSFVLKSLKRM---HGGEIFVPKIPS 247 (344)
T ss_dssp EEECHHHHHHHHHHHHHHC---CSSCEEEECCCE
T ss_pred eeEEHHHHHHHHHHHHhhc---cCCCEEecCCCc
Confidence 3568999999999999864 356667666554
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.9e-23 Score=178.95 Aligned_cols=227 Identities=11% Similarity=-0.011 Sum_probs=164.6
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHH-hcCCCcEEEEeecCCCcccc------------cccccccCCCceeEEEeeCC
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLL-EKNDKGCVIATCRNPNGATG------------LLDLKNRFPERLDVLQLDLT 89 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la-~~G~~~~vi~~~r~~~~~~~------------~~~~~~~~~~~v~~~~~Dls 89 (282)
.....+|++||||||+|||+|++..|+ +.|+. ++++.+..+..++ ..+...+.|.+...+.||++
T Consensus 45 ~~~~~pK~vLVtGaSsGiGlA~AialAf~~GA~--vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~ 122 (401)
T 4ggo_A 45 AGAKAPKNVLVLGCSNGYGLASRITAAFGYGAA--TIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAF 122 (401)
T ss_dssp TTSCCCCEEEEESCSSHHHHHHHHHHHHHHCCE--EEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTT
T ss_pred cccCCCCEEEEECCCCcHHHHHHHHHHhhCCCC--EEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCC
Confidence 345668999999999999999999999 68987 8888887665432 23445566789999999999
Q ss_pred ChhHHHHHHHHHHHHcCCccEEEECcccCCCCCCC---------CCc------------------ccccccchhh---hh
Q 023441 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVL---------QPE------------------TTLNKVEKSS---LM 139 (282)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~---------~~~------------------~~~~~~~~~~---~~ 139 (282)
|+++++++++++++.+|+||+||||++...-.+.. .|. ..+...+.++ +.
T Consensus 123 d~e~i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~ 202 (401)
T 4ggo_A 123 SDEIKAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATV 202 (401)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHH
Confidence 99999999999999999999999999976311100 000 0011122333 34
Q ss_pred hhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCC
Q 023441 140 LAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDP 219 (282)
Q Consensus 140 ~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~ 219 (282)
+.+....++.|...+...+.|.+. ++++.+|+.++....+ ...+..++++|++|+..++.|+.+++ +
T Consensus 203 ~vMg~s~~s~w~~al~~a~lla~G--------~siva~SYiGse~t~P-~Y~~G~mG~AKaaLEa~~r~La~eL~----~ 269 (401)
T 4ggo_A 203 KVMGGEDWERWIKQLSKEGLLEEG--------CITLAYSYIGPEATQA-LYRKGTIGKAKEHLEATAHRLNKENP----S 269 (401)
T ss_dssp HHHSSHHHHHHHHHHHHTTCEEEE--------EEEEEEECCCCGGGHH-HHTTSHHHHHHHHHHHHHHHHHHHCT----T
T ss_pred HHHhhhHHHHHHHHHHhhhcccCC--------ceEEEEeccCcceeec-CCCccHHHHHHHHHHHHHHHHHHhcC----C
Confidence 455566777778888888877653 4999999988765521 11234789999999999999999997 4
Q ss_pred eEEEEEecccccCCCCcccccCCC--------CCCCCChHHHHHHHHHHHhhc
Q 023441 220 VICILLHPGTVDTDLSRPFQRNVP--------EGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 220 i~v~~i~Pg~v~t~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~ 264 (282)
+++++++||.+.|+.....+.-.. +...-..|.|.+++..++.+.
T Consensus 270 ~~a~v~v~~a~vT~AssaIP~~ply~~~l~kvmk~~g~heg~ieq~~rl~~~~ 322 (401)
T 4ggo_A 270 IRAFVSVNKGLVTRASAVIPVIPLYLASLFKVMKEKGNHEGCIEQITRLYAER 322 (401)
T ss_dssp EEEEEEECCCCCCTTGGGSSSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred CcEEEEEcCccccchhhcCCCchHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Confidence 788888999999987654322100 111225677889998888764
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=175.95 Aligned_cols=211 Identities=16% Similarity=0.096 Sum_probs=152.3
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++||++|||||+|+||.+++++|+++|++ |++++|+...... ..+... ...++.++.+|++|.+++.++++.+
T Consensus 1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~--- 74 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEKGYE--VYGADRRSGEFASWRLKELG-IENDVKIIHMDLLEFSNIIRTIEKV--- 74 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCE--EEEECSCCSTTTTHHHHHTT-CTTTEEECCCCTTCHHHHHHHHHHH---
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE--EEEEECCCcccccccHhhcc-ccCceeEEECCCCCHHHHHHHHHhc---
Confidence 35799999999999999999999999987 9999998765432 111111 1247899999999999999988876
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++|++|||||... . +.+.++++..+++|+.++.++++++... .. . +++|++||....-
T Consensus 75 --~~d~vih~A~~~~-------~----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~--~------~~iv~~SS~~vyg 132 (345)
T 2z1m_A 75 --QPDEVYNLAAQSF-------V----GVSFEQPILTAEVDAIGVLRILEALRTV-KP--D------TKFYQASTSEMFG 132 (345)
T ss_dssp --CCSEEEECCCCCC-------H----HHHTTSHHHHHHHHTHHHHHHHHHHHHH-CT--T------CEEEEEEEGGGGC
T ss_pred --CCCEEEECCCCcc-------h----hhhhhCHHHHHHHHHHHHHHHHHHHHHh-CC--C------ceEEEEechhhcC
Confidence 7999999999752 1 2234567889999999999999998853 11 1 2899999975321
Q ss_pred --------CCCCCCCcccchhhHHHHHHHHHHHHHHhccC-CCCeEEEEEecccccCCCCcc----------------cc
Q 023441 185 --------GDNRLGGWHSYRASKAALNQLTKSVSVEFGRK-KDPVICILLHPGTVDTDLSRP----------------FQ 239 (282)
Q Consensus 185 --------~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~-~~~i~v~~i~Pg~v~t~~~~~----------------~~ 239 (282)
...+......|+.+|++.+.+++.++.+++-. -+.+.++.+.||...+.+... ..
T Consensus 133 ~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (345)
T 2z1m_A 133 KVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVL 212 (345)
T ss_dssp SCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEE
T ss_pred CCCCCCCCccCCCCCCChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeee
Confidence 11233456789999999999999999887511 114566777898877654210 00
Q ss_pred cCCC-CCCCCChHHHHHHHHHHHhhc
Q 023441 240 RNVP-EGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 240 ~~~~-~~~~~~~~~~a~~~~~~~~~~ 264 (282)
...+ ...+..++++|++++.+++..
T Consensus 213 ~~~~~~~~~~~v~Dva~a~~~~~~~~ 238 (345)
T 2z1m_A 213 GNLNAKRDWGYAPEYVEAMWLMMQQP 238 (345)
T ss_dssp SCTTCEECCEEHHHHHHHHHHHHTSS
T ss_pred CCCCceeeeEEHHHHHHHHHHHHhCC
Confidence 1111 123678999999999999754
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-22 Score=176.02 Aligned_cols=217 Identities=14% Similarity=0.110 Sum_probs=154.1
Q ss_pred cccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHH
Q 023441 19 SASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 19 ~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~ 98 (282)
++..+.+++|+++|||||+|+||++++++|+++|++ |++++|+........+.+ .++.++.+|++|.+++.+++
T Consensus 11 ~~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~l----~~v~~~~~Dl~d~~~~~~~~ 84 (330)
T 2pzm_A 11 SSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHE--ILVIDNFATGKREVLPPV----AGLSVIEGSVTDAGLLERAF 84 (330)
T ss_dssp ---CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCE--EEEEECCSSSCGGGSCSC----TTEEEEECCTTCHHHHHHHH
T ss_pred ccCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEECCCccchhhhhcc----CCceEEEeeCCCHHHHHHHH
Confidence 345778899999999999999999999999999987 999999765543222221 47899999999999999888
Q ss_pred HHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 99 KSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
+++ ++|+||||||... .. +.++++ +++|+.++.++++++... +. +++|++|
T Consensus 85 ~~~-----~~D~vih~A~~~~-------~~-----~~~~~~--~~~N~~~~~~l~~a~~~~----~~------~~iV~~S 135 (330)
T 2pzm_A 85 DSF-----KPTHVVHSAAAYK-------DP-----DDWAED--AATNVQGSINVAKAASKA----GV------KRLLNFQ 135 (330)
T ss_dssp HHH-----CCSEEEECCCCCS-------CT-----TCHHHH--HHHHTHHHHHHHHHHHHH----TC------SEEEEEE
T ss_pred hhc-----CCCEEEECCccCC-------Cc-----cccChh--HHHHHHHHHHHHHHHHHc----CC------CEEEEec
Confidence 765 7999999999863 11 223444 899999999999998742 22 2899999
Q ss_pred ccccccCCCCC--C------CcccchhhHHHHHHHHHHHHHHhccCCCCeE-EEEEecccccCCCCccc----ccCCC--
Q 023441 179 ARVGSIGDNRL--G------GWHSYRASKAALNQLTKSVSVEFGRKKDPVI-CILLHPGTVDTDLSRPF----QRNVP-- 243 (282)
Q Consensus 179 s~~~~~~~~~~--~------~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~-v~~i~Pg~v~t~~~~~~----~~~~~-- 243 (282)
|.......... + ....|+.+|++++.+++.+ ++... .+| ++.+.||. .+++...+ .....
T Consensus 136 S~~~~~~~~~~~~~~~E~~~~~~~Y~~sK~~~e~~~~~~--~~~~~--~iR~~~v~gp~~-~~~~~~~~~~~~~~~~~~~ 210 (330)
T 2pzm_A 136 TALCYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLMMS--DVPVV--SLRLANVTGPRL-AIGPIPTFYKRLKAGQKCF 210 (330)
T ss_dssp EGGGGCSCSSSSBCTTCCCCCCSHHHHHHHHHHHHHHTC--SSCEE--EEEECEEECTTC-CSSHHHHHHHHHHTTCCCC
T ss_pred CHHHhCCCccCCCCcCCCCCCCChHHHHHHHHHHHHHHc--CCCEE--EEeeeeeECcCC-CCCHHHHHHHHHHcCCEEe
Confidence 98664321111 1 4578999999999999877 44333 566 66677775 34432110 00000
Q ss_pred ----CCCCCChHHHHH-HHHHHHhhcCCCCCCceeecCCcc
Q 023441 244 ----EGKLFTKEFSVQ-KLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 244 ----~~~~~~~~~~a~-~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
...+..++++|+ .++.++.... |..|.+++++
T Consensus 211 ~~~~~~~~i~~~Dva~~a~~~~~~~~~----g~~~~v~~~~ 247 (330)
T 2pzm_A 211 CSDTVRDFLDMSDFLAIADLSLQEGRP----TGVFNVSTGE 247 (330)
T ss_dssp EESCEECEEEHHHHHHHHHHHTSTTCC----CEEEEESCSC
T ss_pred CCCCEecceeHHHHHHHHHHHHhhcCC----CCEEEeCCCC
Confidence 234568999999 9988887532 7778777653
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-23 Score=217.26 Aligned_cols=178 Identities=12% Similarity=0.084 Sum_probs=138.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc---cccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG---LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~---~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+|++|||||++|||+++|++|+++|++ +|++.+|+..+.+. ..+.+...+.++.+++||++|.++++++++++.
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~-~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~- 1960 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQ-KLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEAT- 1960 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCC-EEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCC-EEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHH-
Confidence 6899999999999999999999999996 58888998766532 233334456789999999999999999999987
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++++||+||||||+.. ..++.+.+.++|++.+++|+.|++++.+.+.+.+.+. | +||++||..+.
T Consensus 1961 ~~g~id~lVnnAgv~~-------~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~--g------~iV~iSS~ag~ 2025 (2512)
T 2vz8_A 1961 QLGPVGGVFNLAMVLR-------DAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPEL--D------YFVIFSSVSCG 2025 (2512)
T ss_dssp HHSCEEEEEECCCC-----------------------CTTTTHHHHHHHHHHHHHHCTTC--C------EEEEECCHHHH
T ss_pred hcCCCcEEEECCCcCC-------CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccC--C------EEEEecchhhc
Confidence 4799999999999875 5667788899999999999999999999999887654 2 99999999998
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccc
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTV 230 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v 230 (282)
.+ .++...|+++|+++++|++.++.+ |+...++..|.+
T Consensus 2026 ~g---~~g~~~Y~aaKaal~~l~~~rr~~------Gl~~~a~~~g~~ 2063 (2512)
T 2vz8_A 2026 RG---NAGQANYGFANSAMERICEKRRHD------GLPGLAVQWGAI 2063 (2512)
T ss_dssp TT---CTTCHHHHHHHHHHHHHHHHHHHT------TSCCCEEEECCB
T ss_pred CC---CCCcHHHHHHHHHHHHHHHHHHHC------CCcEEEEEccCc
Confidence 87 677889999999999999987766 556666666665
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-22 Score=179.05 Aligned_cols=221 Identities=14% Similarity=0.073 Sum_probs=161.4
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc-cCCCceeEE-EeeCCChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN-RFPERLDVL-QLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~-~~~~~v~~~-~~Dls~~~~~~~~~~~~ 101 (282)
..++|+++|||||+|+||++++++|+++|++ |++++|+....+.+.+.+. ..+.++.++ .+|++|.+++.++++
T Consensus 7 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~-- 82 (342)
T 1y1p_A 7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYK--VRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK-- 82 (342)
T ss_dssp SSCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT--
T ss_pred cCCCCCEEEEECCccHHHHHHHHHHHHCCCE--EEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHc--
Confidence 4567899999999999999999999999987 9999998765543333221 123578888 899999988877654
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
++|+||||||... .. +++.+.+++|+.++.++++++.+. .+. +++|++||..
T Consensus 83 -----~~d~vih~A~~~~-------~~-------~~~~~~~~~n~~g~~~ll~~~~~~---~~~------~~iv~~SS~~ 134 (342)
T 1y1p_A 83 -----GAAGVAHIASVVS-------FS-------NKYDEVVTPAIGGTLNALRAAAAT---PSV------KRFVLTSSTV 134 (342)
T ss_dssp -----TCSEEEECCCCCS-------CC-------SCHHHHHHHHHHHHHHHHHHHHTC---TTC------CEEEEECCGG
T ss_pred -----CCCEEEEeCCCCC-------CC-------CCHHHHHHHHHHHHHHHHHHHHhC---CCC------cEEEEeccHH
Confidence 6999999999763 11 235678999999999999998752 111 3899999976
Q ss_pred cccCCC----------------------------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC
Q 023441 182 GSIGDN----------------------------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233 (282)
Q Consensus 182 ~~~~~~----------------------------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~ 233 (282)
...... +......|+.+|++.+.+++.++.+++. ++++++++|+.+.++
T Consensus 135 ~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~---~~~~~~~rp~~v~g~ 211 (342)
T 1y1p_A 135 SALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKP---HFTLNAVLPNYTIGT 211 (342)
T ss_dssp GTCCCCTTCCCCEECTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCC---SSEEEEEEESEEECC
T ss_pred HhcCCCCCCCCcccCccccCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCC---CceEEEEcCCceECC
Confidence 542110 0112357999999999999999998854 689999999999888
Q ss_pred CCcccc---------------------cCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 234 LSRPFQ---------------------RNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 234 ~~~~~~---------------------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
...... .......+..++++|++++.++.. ...+|..+..+++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~--~~~~g~~~~~~g~~~s 278 (342)
T 1y1p_A 212 IFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVL--PQIERRRVYGTAGTFD 278 (342)
T ss_dssp CSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCSEEEEEHHHHHHHHHHHHHC--TTCCSCEEEECCEEEC
T ss_pred CCCCCCCCccHHHHHHHHHcCCCccccccCCcCCEeEHHHHHHHHHHHHcC--cccCCceEEEeCCCCC
Confidence 653211 001123456889999999998875 3345665555665543
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-21 Score=169.22 Aligned_cols=208 Identities=14% Similarity=0.085 Sum_probs=156.9
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
-+-+++|||||+|+||++++++|+++|++ |++++|+... +. + ++.++.+|++|.+++.++++.
T Consensus 10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~--V~~~~r~~~~-~~----l-----~~~~~~~Dl~d~~~~~~~~~~----- 72 (321)
T 2pk3_A 10 HGSMRALITGVAGFVGKYLANHLTEQNVE--VFGTSRNNEA-KL----P-----NVEMISLDIMDSQRVKKVISD----- 72 (321)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCTTC-CC----T-----TEEEEECCTTCHHHHHHHHHH-----
T ss_pred cCcceEEEECCCChHHHHHHHHHHHCCCE--EEEEecCCcc-cc----c-----eeeEEECCCCCHHHHHHHHHh-----
Confidence 34589999999999999999999999987 9999998765 21 1 688999999999999988875
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
+++|+||||||... . ..+.++++..+++|+.++.++++++ +.+. +. +++|++||......
T Consensus 73 ~~~d~vih~A~~~~-------~----~~~~~~~~~~~~~Nv~g~~~l~~a~-~~~~--~~------~~iv~~SS~~v~g~ 132 (321)
T 2pk3_A 73 IKPDYIFHLAAKSS-------V----KDSWLNKKGTFSTNVFGTLHVLDAV-RDSN--LD------CRILTIGSSEEYGM 132 (321)
T ss_dssp HCCSEEEECCSCCC-------H----HHHTTCHHHHHHHHHHHHHHHHHHH-HHHT--CC------CEEEEEEEGGGTBS
T ss_pred cCCCEEEEcCcccc-------h----hhhhhcHHHHHHHHHHHHHHHHHHH-HHhC--CC------CeEEEEccHHhcCC
Confidence 37999999999753 1 1233467889999999999999998 4442 11 38999999864422
Q ss_pred C----------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc------c----cc---C-
Q 023441 186 D----------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------F----QR---N- 241 (282)
Q Consensus 186 ~----------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~------~----~~---~- 241 (282)
. .+......|+.+|++.+.+++.++.++ +++++++.|+.+.++.... + .. .
T Consensus 133 ~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~ 207 (321)
T 2pk3_A 133 ILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAY-----GMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEK 207 (321)
T ss_dssp CCGGGCSBCTTSCCBCCSHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHc-----CCCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCC
Confidence 1 122445789999999999999998875 7899999999998775431 0 00 1
Q ss_pred ----------CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 242 ----------VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 242 ----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
.....+..++++|++++.++... .+|..|.+.++
T Consensus 208 ~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~---~~g~~~~i~~~ 251 (321)
T 2pk3_A 208 QEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYG---KTGDVYNVCSG 251 (321)
T ss_dssp SCSEEEESCSSCEEEEEEHHHHHHHHHHHHHHC---CTTCEEEESCS
T ss_pred CCCeEEeCCCCcEEeeEEHHHHHHHHHHHHhCC---CCCCeEEeCCC
Confidence 01123468999999999999864 45777777654
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-22 Score=168.37 Aligned_cols=216 Identities=14% Similarity=0.074 Sum_probs=150.1
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhc--CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEK--NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~--G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.++|++|||||+|+||++++++|+++ |++ |++.+|+..+.+.+ +.++.++.+|++|.+++.++++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~--V~~~~r~~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~---- 68 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFV--AKGLVRSAQGKEKI-------GGEADVFIGDITDADSINPAFQ---- 68 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCE--EEEEESCHHHHHHT-------TCCTTEEECCTTSHHHHHHHHT----
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcE--EEEEEcCCCchhhc-------CCCeeEEEecCCCHHHHHHHHc----
Confidence 46799999999999999999999999 666 99999986544321 3468899999999998888775
Q ss_pred HcCCccEEEECcccCCCCCC--CCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 104 KYGSLNLLINASGILSIPNV--LQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~--~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
++|++|||+|....... ........+...+.+.+.+++|+.++.++++++... +. +++|++||..
T Consensus 69 ---~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~------~~iv~~SS~~ 135 (253)
T 1xq6_A 69 ---GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA----GV------KHIVVVGSMG 135 (253)
T ss_dssp ---TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH----TC------SEEEEEEETT
T ss_pred ---CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc----CC------CEEEEEcCcc
Confidence 58999999997631000 000000122233455677899999999999887653 11 2899999987
Q ss_pred cccCCCCCCCc--ccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--c-ccC-----CCCCCCCChH
Q 023441 182 GSIGDNRLGGW--HSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--F-QRN-----VPEGKLFTKE 251 (282)
Q Consensus 182 ~~~~~~~~~~~--~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--~-~~~-----~~~~~~~~~~ 251 (282)
+..+..+...+ ..|+.+|++++.+.+. . ++++++++||.+.++.... . ... .......+++
T Consensus 136 ~~~~~~~~~~~~~~~y~~sK~~~e~~~~~-------~--~i~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (253)
T 1xq6_A 136 GTNPDHPLNKLGNGNILVWKRKAEQYLAD-------S--GTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRA 206 (253)
T ss_dssp TTCTTCGGGGGGGCCHHHHHHHHHHHHHT-------S--SSCEEEEEECEEECSCSSSSCEEEESTTGGGGSSCCEEEHH
T ss_pred CCCCCCccccccchhHHHHHHHHHHHHHh-------C--CCceEEEecceeecCCcchhhhhccCCcCCcCCCCcEEcHH
Confidence 75442222211 2466799999887652 3 7999999999998875321 1 000 0123356899
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
++|+.++.++.... ..|..+.+.++
T Consensus 207 Dva~~~~~~~~~~~--~~g~~~~i~~~ 231 (253)
T 1xq6_A 207 DVAEVCIQALLFEE--AKNKAFDLGSK 231 (253)
T ss_dssp HHHHHHHHHTTCGG--GTTEEEEEEEC
T ss_pred HHHHHHHHHHcCcc--ccCCEEEecCC
Confidence 99999999987532 46777776653
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-21 Score=168.43 Aligned_cols=216 Identities=15% Similarity=0.109 Sum_probs=157.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC--cccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN--GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~--~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++++|||||+|+||++++++|+++|....|++.+|+.. ..+.+.+.. .+.++.++.+|++|.+++.+++.
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~----- 74 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLE--DDPRYTFVKGDVADYELVKELVR----- 74 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTT--TCTTEEEEECCTTCHHHHHHHHH-----
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhc--cCCceEEEEcCCCCHHHHHHHhh-----
Confidence 356899999999999999999999973234999998753 222222211 13578999999999999888772
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++|+||||||... . +.+.++++..+++|+.++.++++++.+.- . . +++|++||....-
T Consensus 75 --~~d~vih~A~~~~-------~----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~--~-~------~~iv~~SS~~vyg 132 (336)
T 2hun_A 75 --KVDGVVHLAAESH-------V----DRSISSPEIFLHSNVIGTYTLLESIRREN--P-E------VRFVHVSTDEVYG 132 (336)
T ss_dssp --TCSEEEECCCCCC-------H----HHHHHCTHHHHHHHHHHHHHHHHHHHHHC--T-T------SEEEEEEEGGGGC
T ss_pred --CCCEEEECCCCcC-------h----hhhhhCHHHHHHHHHHHHHHHHHHHHHhC--C-C------cEEEEeccHHHHC
Confidence 7999999999752 1 12345677889999999999999998761 1 1 2899999965321
Q ss_pred C--------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--c--------ccCC----
Q 023441 185 G--------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--F--------QRNV---- 242 (282)
Q Consensus 185 ~--------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--~--------~~~~---- 242 (282)
. ..+......|+.+|++.+.+++.++.++ ++++++++|+.+.++.... + ....
T Consensus 133 ~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 207 (336)
T 2hun_A 133 DILKGSFTENDRLMPSSPYSATKAASDMLVLGWTRTY-----NLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPI 207 (336)
T ss_dssp CCSSSCBCTTBCCCCCSHHHHHHHHHHHHHHHHHHHT-----TCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEE
T ss_pred CCCCCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh-----CCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceE
Confidence 1 1133456789999999999999999876 6899999999998876421 0 0010
Q ss_pred -----CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 243 -----PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 243 -----~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.......++++|+.++.++... .+|..|.+.+++
T Consensus 208 ~~~~~~~~~~i~v~Dva~~~~~~~~~~---~~g~~~~v~~~~ 246 (336)
T 2hun_A 208 YGTGKNVRDWLYVEDHVRAIELVLLKG---ESREIYNISAGE 246 (336)
T ss_dssp ETC---CEEEEEHHHHHHHHHHHHHHC---CTTCEEEECCSC
T ss_pred eCCCCceeeeEEHHHHHHHHHHHHhCC---CCCCEEEeCCCC
Confidence 1123457899999999998753 367778776653
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-21 Score=170.27 Aligned_cols=221 Identities=14% Similarity=0.166 Sum_probs=159.8
Q ss_pred EEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCC--cccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 30 VSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPN--GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~--~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++|||||+|+||.+++++|+++ |++ |++++|+.. ..+.+.+... +.++.++.+|++|.+++.+++++.
T Consensus 2 kvlVTGasG~iG~~l~~~L~~~~g~~--V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~----- 72 (361)
T 1kew_A 2 KILITGGAGFIGSAVVRHIIKNTQDT--VVNIDKLTYAGNLESLSDISE--SNRYNFEHADICDSAEITRIFEQY----- 72 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCE--EEEEECCCTTCCGGGGTTTTT--CTTEEEEECCTTCHHHHHHHHHHH-----
T ss_pred EEEEECCCchHhHHHHHHHHhcCCCe--EEEEecCCCCCchhhhhhhhc--CCCeEEEECCCCCHHHHHHHHhhc-----
Confidence 5999999999999999999998 666 888898752 2222222211 357899999999999999888752
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc--ccc
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV--GSI 184 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~--~~~ 184 (282)
++|+||||||... . +.+.+.++..+++|+.++.++++++.+.|..-+.. ....+++|++||.. +..
T Consensus 73 ~~d~vih~A~~~~-------~----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~-~~~~~~iv~~SS~~v~g~~ 140 (361)
T 1kew_A 73 QPDAVMHLAAESH-------V----DRSITGPAAFIETNIVGTYALLEVARKYWSALGED-KKNNFRFHHISTDEVYGDL 140 (361)
T ss_dssp CCSEEEECCSCCC-------H----HHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHH-HHHHCEEEEEEEGGGGCCC
T ss_pred CCCEEEECCCCcC-------h----hhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccc-cccCceEEEeCCHHHhCCC
Confidence 7999999999752 1 22345678899999999999999999886431100 00012899999964 221
Q ss_pred C----------------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--c--------
Q 023441 185 G----------------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--F-------- 238 (282)
Q Consensus 185 ~----------------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--~-------- 238 (282)
. ..+......|+.+|++++.+++.++.++ ++++++++|+.+.++.... +
T Consensus 141 ~~~~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~ 215 (361)
T 1kew_A 141 PHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY-----GLPTIVTNCSNNYGPYHFPEKLIPLVILNA 215 (361)
T ss_dssp CCGGGSCTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECEEESTTCCTTSHHHHHHHHH
T ss_pred cccccccccccCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHh-----CCcEEEEeeceeECCCCCcccHHHHHHHHH
Confidence 1 0123456789999999999999999886 6889999999998886421 0
Q ss_pred ccCC---------CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 239 QRNV---------PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 239 ~~~~---------~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.... .......++++|+.++.++... .+|..|.+.+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~---~~g~~~~v~~~~ 262 (361)
T 1kew_A 216 LEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEG---KAGETYNIGGHN 262 (361)
T ss_dssp HHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHC---CTTCEEEECCCC
T ss_pred HcCCCceEcCCCceeEeeEEHHHHHHHHHHHHhCC---CCCCEEEecCCC
Confidence 0010 1123457999999999999753 468788877654
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=172.30 Aligned_cols=220 Identities=11% Similarity=0.014 Sum_probs=158.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccc-ccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK-NRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~-~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
+++++|||||+|+||++++++|+++|++ |++++|+........+.+ ...+.++.++.+|++|.+++.++++.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYD--VVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDA----- 76 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCE--EEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHH-----
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCc--EEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhc-----
Confidence 4689999999999999999999999987 999999887765433222 22245789999999999999998876
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
+++|++|||||... ... ..+...+.+++|+.++.++++.+.. .+. +++|++||....-.
T Consensus 77 ~~~d~vih~A~~~~-------~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~------~~iv~~SS~~~~g~ 135 (341)
T 3enk_A 77 HPITAAIHFAALKA-------VGE----SVAKPIEYYRNNLDSLLSLLRVMRE----RAV------KRIVFSSSATVYGV 135 (341)
T ss_dssp SCCCEEEECCCCCC-------HHH----HHHCHHHHHHHHHHHHHHHHHHHHH----TTC------CEEEEEEEGGGBCS
T ss_pred cCCcEEEECccccc-------cCc----cccChHHHHHHHHHHHHHHHHHHHh----CCC------CEEEEEecceEecC
Confidence 47999999999863 111 1233456788999999998887643 222 28999999664421
Q ss_pred C--------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--------------------
Q 023441 186 D--------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-------------------- 237 (282)
Q Consensus 186 ~--------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~-------------------- 237 (282)
. .+......|+.+|++.+.+++.++.++. +++++++.|+.+..+....
T Consensus 136 ~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~----~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~ 211 (341)
T 3enk_A 136 PERSPIDETFPLSATNPYGQTKLMAEQILRDVEAADP----SWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQV 211 (341)
T ss_dssp CSSSSBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHCT----TCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCC----CceEEEEeeccccCCccccccCCCcccCccchHHHHHHH
Confidence 1 1223446899999999999999998864 5888899998887653210
Q ss_pred cccC----------------CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 238 FQRN----------------VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 238 ~~~~----------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
.... .....+...+++|++++.++........|..|.+.++
T Consensus 212 ~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~ 268 (341)
T 3enk_A 212 AVGKLEKLRVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDALERRDASLTVNLGTG 268 (341)
T ss_dssp HHTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHHHTSCEEEEESCS
T ss_pred HhcCCCceEEeCCccCCCCCCeeEeeEEHHHHHHHHHHHHHhhhcCCcceEEEeCCC
Confidence 0000 0111345679999999998876433446777777544
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=162.62 Aligned_cols=185 Identities=11% Similarity=0.061 Sum_probs=138.1
Q ss_pred CcEEEEecCCCchhHHHHHHHH-hcCCCcEEEEeecCCC-cccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 28 GGVSLVQGASRGIGLEFAKQLL-EKNDKGCVIATCRNPN-GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la-~~G~~~~vi~~~r~~~-~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
-|+++||||+|+||++++++|+ ++|++ |++.+|+++ +.+.+. ..+.++.++++|++|.++++++++
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~--V~~~~r~~~~~~~~~~----~~~~~~~~~~~D~~d~~~~~~~~~------ 72 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMH--ITLYGRQLKTRIPPEI----IDHERVTVIEGSFQNPGXLEQAVT------ 72 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCE--EEEEESSHHHHSCHHH----HTSTTEEEEECCTTCHHHHHHHHT------
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCce--EEEEecCccccchhhc----cCCCceEEEECCCCCHHHHHHHHc------
Confidence 3789999999999999999999 89987 999999876 544322 124589999999999999988875
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
++|+||||+|.. |+. .+.+.+.+++++.+ +||++||..+..+
T Consensus 73 -~~d~vv~~ag~~--------------------------n~~-----~~~~~~~~~~~~~~------~iv~iSs~~~~~~ 114 (221)
T 3r6d_A 73 -NAEVVFVGAMES--------------------------GSD-----MASIVKALSRXNIR------RVIGVSMAGLSGE 114 (221)
T ss_dssp -TCSEEEESCCCC--------------------------HHH-----HHHHHHHHHHTTCC------EEEEEEETTTTSC
T ss_pred -CCCEEEEcCCCC--------------------------Chh-----HHHHHHHHHhcCCC------eEEEEeeceecCC
Confidence 689999999852 111 66677777766544 8999999887654
Q ss_pred CCCCCCcc----------cchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC-CCccccc---CCC-CCCCCCh
Q 023441 186 DNRLGGWH----------SYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD-LSRPFQR---NVP-EGKLFTK 250 (282)
Q Consensus 186 ~~~~~~~~----------~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~-~~~~~~~---~~~-~~~~~~~ 250 (282)
.+... .|+.+|.+++.+.+. . ++++++|+||++.++ ....+.. ..+ .....++
T Consensus 115 ---~~~~~~~~~~~~~~~~y~~~K~~~e~~~~~-------~--~i~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (221)
T 3r6d_A 115 ---FPVALEKWTFDNLPISYVQGERQARNVLRE-------S--NLNYTILRLTWLYNDPEXTDYELIPEGAQFNDAQVSR 182 (221)
T ss_dssp ---SCHHHHHHHHHTSCHHHHHHHHHHHHHHHH-------S--CSEEEEEEECEEECCTTCCCCEEECTTSCCCCCEEEH
T ss_pred ---CCcccccccccccccHHHHHHHHHHHHHHh-------C--CCCEEEEechhhcCCCCCcceeeccCCccCCCceeeH
Confidence 22222 799999999887652 3 799999999999887 3332221 112 2235688
Q ss_pred HHHHHHHHHHH--hhcCCCCCCceee
Q 023441 251 EFSVQKLLNII--NNIKSHDNGKFFA 274 (282)
Q Consensus 251 ~~~a~~~~~~~--~~~~~~~~g~~~~ 274 (282)
+++|+.+++++ ++....+++.+..
T Consensus 183 ~dvA~~~~~l~~~~~~~~~~~~~~~i 208 (221)
T 3r6d_A 183 EAVVKAIFDILHAADETPFHRTSIGV 208 (221)
T ss_dssp HHHHHHHHHHHTCSCCGGGTTEEEEE
T ss_pred HHHHHHHHHHHHhcChhhhhcceeee
Confidence 99999999999 7766566555544
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-21 Score=170.17 Aligned_cols=209 Identities=14% Similarity=0.177 Sum_probs=157.2
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.++++++|||||+|+||.+++++|+++|++ |++++|+..........+. .+.++.++.+|++|.+++.++++..
T Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~--- 79 (357)
T 1rkx_A 6 FWQGKRVFVTGHTGFKGGWLSLWLQTMGAT--VKGYSLTAPTVPSLFETAR-VADGMQSEIGDIRDQNKLLESIREF--- 79 (357)
T ss_dssp HHTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSCSSSSCHHHHTT-TTTTSEEEECCTTCHHHHHHHHHHH---
T ss_pred hhCCCEEEEECCCchHHHHHHHHHHhCCCe--EEEEeCCCcccchhhHhhc-cCCceEEEEccccCHHHHHHHHHhc---
Confidence 367899999999999999999999999987 9999998876554433322 2457899999999999999988765
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++|+||||||... ...+.+.+...+++|+.++.++++++.+. ++. +++|++||....-
T Consensus 80 --~~d~vih~A~~~~-----------~~~~~~~~~~~~~~n~~~~~~l~~a~~~~---~~~------~~~v~~SS~~vyg 137 (357)
T 1rkx_A 80 --QPEIVFHMAAQPL-----------VRLSYSEPVETYSTNVMGTVYLLEAIRHV---GGV------KAVVNITSDKCYD 137 (357)
T ss_dssp --CCSEEEECCSCCC-----------HHHHHHCHHHHHHHHTHHHHHHHHHHHHH---CCC------CEEEEECCGGGBC
T ss_pred --CCCEEEECCCCcc-----------cccchhCHHHHHHHHHHHHHHHHHHHHHh---CCC------CeEEEecCHHHhC
Confidence 6999999999631 12234567788999999999999998763 111 3899999976321
Q ss_pred C---------CCCCCCcccchhhHHHHHHHHHHHHHHhc------cCCCCeEEEEEecccccCCCCc---cc--------
Q 023441 185 G---------DNRLGGWHSYRASKAALNQLTKSVSVEFG------RKKDPVICILLHPGTVDTDLSR---PF-------- 238 (282)
Q Consensus 185 ~---------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~------~~~~~i~v~~i~Pg~v~t~~~~---~~-------- 238 (282)
. ..+......|+.+|.+.+.+++.++.++. +. ++++++++||.+.++... .+
T Consensus 138 ~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~--gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~ 215 (357)
T 1rkx_A 138 NKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQH--GTAVATVRAGNVIGGGDWALDRIVPDILRAF 215 (357)
T ss_dssp CCCSSSCBCTTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--CCEEEEEECCCEECTTCCCSSCHHHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHhhhhccccC--CceEEEEeeceeeCCCCCccccHHHHHHHHH
Confidence 1 11334567899999999999999998874 33 799999999999876431 00
Q ss_pred ccC--------CCCCCCCChHHHHHHHHHHHhh
Q 023441 239 QRN--------VPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 239 ~~~--------~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
... .....+...+++++.++.++..
T Consensus 216 ~~g~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~ 248 (357)
T 1rkx_A 216 EQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQK 248 (357)
T ss_dssp HTTCCEECSCTTCEECCEETHHHHHHHHHHHHH
T ss_pred hcCCCEEECCCCCeeccEeHHHHHHHHHHHHHh
Confidence 000 0112356789999999988864
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=171.74 Aligned_cols=217 Identities=13% Similarity=0.116 Sum_probs=159.6
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc-ccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG-ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~-~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
+++|||||+|+||++++++|+++|++ |++++|+... .....+.+.. ..++.++.+|++|.+++.++++.. +
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~l~~-~~~~~~~~~Dl~d~~~~~~~~~~~-----~ 73 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGID--LIVFDNLSRKGATDNLHWLSS-LGNFEFVHGDIRNKNDVTRLITKY-----M 73 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCCSTTHHHHHHHHHT-TCCCEEEECCTTCHHHHHHHHHHH-----C
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCE--EEEEeCCCccCchhhhhhhcc-CCceEEEEcCCCCHHHHHHHHhcc-----C
Confidence 58999999999999999999999987 9999886422 2111122222 246899999999999999888762 6
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC--
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG-- 185 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~-- 185 (282)
+|+||||||... . +.+.+.++..+++|+.++.++++++.+...+ +++|++||......
T Consensus 74 ~d~vih~A~~~~-------~----~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~---------~~iv~~SS~~v~g~~~ 133 (347)
T 1orr_A 74 PDSCFHLAGQVA-------M----TTSIDNPCMDFEINVGGTLNLLEAVRQYNSN---------CNIIYSSTNKVYGDLE 133 (347)
T ss_dssp CSEEEECCCCCC-------H----HHHHHCHHHHHHHHHHHHHHHHHHHHHHCTT---------CEEEEEEEGGGGTTCT
T ss_pred CCEEEECCcccC-------h----hhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC---------ceEEEeccHHHhCCCC
Confidence 999999999752 1 1234567788999999999999999886532 28999999764321
Q ss_pred ----------------------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-----
Q 023441 186 ----------------------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----- 238 (282)
Q Consensus 186 ----------------------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----- 238 (282)
..+......|+.+|++.+.+++.++.++ ++++++++||.+.++.....
T Consensus 134 ~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilrp~~v~g~~~~~~~~~~~ 208 (347)
T 1orr_A 134 QYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF-----GLNTVVFRHSSMYGGRQFATYDQGW 208 (347)
T ss_dssp TSCEEECSSCEEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECCEECTTCCCBTTBCH
T ss_pred cCCcccccccccccccccCccccCCCCCCCchHHHHHHHHHHHHHHHHHh-----CCcEEEEccCceeCcCCCCCCcCcH
Confidence 1123355689999999999999999886 69999999999998864210
Q ss_pred ---------ccCC----CC---------CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 239 ---------QRNV----PE---------GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 239 ---------~~~~----~~---------~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.... +. ..+..++++|++++.++.. ....+|+.|.+.+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~-~~~~~g~~~~v~~~~ 270 (347)
T 1orr_A 209 VGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALAN-VSKIRGNAFNIGGTI 270 (347)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHT-HHHHTTCEEEESSCG
T ss_pred HHHHHHHHHhCcccCCCCeEEecCCcceEeeEEHHHHHHHHHHHHhc-cccCCCCEEEeCCCC
Confidence 0000 11 1245899999999998873 123568888887664
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.9e-22 Score=162.55 Aligned_cols=195 Identities=12% Similarity=0.157 Sum_probs=148.9
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCC-hhHHHHHHHHHHHHcCCc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV-ESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~-~~~~~~~~~~~~~~~~~i 108 (282)
++|||||+|+||++++++|+++|++ |++++|+.++.+.. .++.++.+|++| .+++.++++ ++
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~~--V~~~~R~~~~~~~~--------~~~~~~~~D~~d~~~~~~~~~~-------~~ 64 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDYQ--IYAGARKVEQVPQY--------NNVKAVHFDVDWTPEEMAKQLH-------GM 64 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSCE--EEEEESSGGGSCCC--------TTEEEEECCTTSCHHHHHTTTT-------TC
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCE--EEEEECCccchhhc--------CCceEEEecccCCHHHHHHHHc-------CC
Confidence 6999999999999999999999987 99999998665432 478999999999 888877664 69
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|++|||+|... ...+++|+.++.++++++.. .+. +++|++||.++..+.+.
T Consensus 65 d~vi~~ag~~~-------------------~~~~~~n~~~~~~l~~a~~~----~~~------~~iv~~SS~~~~~~~~~ 115 (219)
T 3dqp_A 65 DAIINVSGSGG-------------------KSLLKVDLYGAVKLMQAAEK----AEV------KRFILLSTIFSLQPEKW 115 (219)
T ss_dssp SEEEECCCCTT-------------------SSCCCCCCHHHHHHHHHHHH----TTC------CEEEEECCTTTTCGGGC
T ss_pred CEEEECCcCCC-------------------CCcEeEeHHHHHHHHHHHHH----hCC------CEEEEECcccccCCCcc
Confidence 99999999863 12588999999999998743 222 28999999877644211
Q ss_pred ----CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-cCCCCCCCCChHHHHHHHHHHHhh
Q 023441 189 ----LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-RNVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 189 ----~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
......|+.+|++.+.+.+ ... ++++++++||++.++...... .........+++++|+.++.++..
T Consensus 116 ~e~~~~~~~~Y~~sK~~~e~~~~------~~~--~i~~~ilrp~~v~g~~~~~~~~~~~~~~~~i~~~Dva~~i~~~l~~ 187 (219)
T 3dqp_A 116 IGAGFDALKDYYIAKHFADLYLT------KET--NLDYTIIQPGALTEEEATGLIDINDEVSASNTIGDVADTIKELVMT 187 (219)
T ss_dssp CSHHHHHTHHHHHHHHHHHHHHH------HSC--CCEEEEEEECSEECSCCCSEEEESSSCCCCEEHHHHHHHHHHHHTC
T ss_pred cccccccccHHHHHHHHHHHHHH------hcc--CCcEEEEeCceEecCCCCCccccCCCcCCcccHHHHHHHHHHHHhC
Confidence 0115689999999998876 233 899999999999887544321 123345667899999999999976
Q ss_pred cCCCCCCceeecCCccc
Q 023441 264 IKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 264 ~~~~~~g~~~~~d~~~~ 280 (282)
.. ..|+.+.+.++..
T Consensus 188 ~~--~~g~~~~i~~g~~ 202 (219)
T 3dqp_A 188 DH--SIGKVISMHNGKT 202 (219)
T ss_dssp GG--GTTEEEEEEECSE
T ss_pred cc--ccCcEEEeCCCCc
Confidence 43 4577887755443
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-20 Score=154.33 Aligned_cols=198 Identities=12% Similarity=0.112 Sum_probs=145.2
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
+++++||||+|+||++++++|+++|++ |++++|+.++.... ...++.++.+|++|.+++.++++ .
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~--V~~~~r~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~-------~ 67 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYE--VTVLVRDSSRLPSE------GPRPAHVVVGDVLQAADVDKTVA-------G 67 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCGGGSCSS------SCCCSEEEESCTTSHHHHHHHHT-------T
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCe--EEEEEeChhhcccc------cCCceEEEEecCCCHHHHHHHHc-------C
Confidence 479999999999999999999999977 99999987654321 13478999999999998887765 5
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++|||+|... .. ...++|+.++.++++++... +. +++|++||........
T Consensus 68 ~d~vi~~a~~~~-------~~-----------~~~~~n~~~~~~~~~~~~~~----~~------~~~v~~Ss~~~~~~~~ 119 (206)
T 1hdo_A 68 QDAVIVLLGTRN-------DL-----------SPTTVMSEGARNIVAAMKAH----GV------DKVVACTSAFLLWDPT 119 (206)
T ss_dssp CSEEEECCCCTT-------CC-----------SCCCHHHHHHHHHHHHHHHH----TC------CEEEEECCGGGTSCTT
T ss_pred CCEEEECccCCC-------CC-----------CccchHHHHHHHHHHHHHHh----CC------CeEEEEeeeeeccCcc
Confidence 899999999753 10 01247888888888887653 21 2899999986543311
Q ss_pred CCC-CcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccc-cCCCCccccc---CCCCCCCCChHHHHHHHHHHHh
Q 023441 188 RLG-GWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTV-DTDLSRPFQR---NVPEGKLFTKEFSVQKLLNIIN 262 (282)
Q Consensus 188 ~~~-~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v-~t~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~ 262 (282)
..+ ....|+.+|++++.+.+. . ++++++++||.+ .++....+.. ..+.....+++++|+.++.++.
T Consensus 120 ~~~~~~~~y~~~K~~~e~~~~~-------~--~i~~~~lrp~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~ 190 (206)
T 1hdo_A 120 KVPPRLQAVTDDHIRMHKVLRE-------S--GLKYVAVMPPHIGDQPLTGAYTVTLDGRGPSRVISKHDLGHFMLRCLT 190 (206)
T ss_dssp CSCGGGHHHHHHHHHHHHHHHH-------T--CSEEEEECCSEEECCCCCSCCEEESSSCSSCSEEEHHHHHHHHHHTTS
T ss_pred cccccchhHHHHHHHHHHHHHh-------C--CCCEEEEeCCcccCCCCCcceEecccCCCCCCccCHHHHHHHHHHHhc
Confidence 111 457899999999988742 3 799999999998 4443332211 1121466789999999999887
Q ss_pred hcCCCCCCceeecCCcc
Q 023441 263 NIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 263 ~~~~~~~g~~~~~d~~~ 279 (282)
.. ..+|+.+.+++++
T Consensus 191 ~~--~~~g~~~~i~~g~ 205 (206)
T 1hdo_A 191 TD--EYDGHSTYPSHQY 205 (206)
T ss_dssp CS--TTTTCEEEEECCC
T ss_pred Cc--cccccceeeeccc
Confidence 63 4678888887764
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-20 Score=163.52 Aligned_cols=221 Identities=11% Similarity=0.101 Sum_probs=154.3
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc--ccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT--GLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~--~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
.|+++++++|||||+|+||.+++++|+++|..+.|+..+|...... .+.... ...++.++.+|++|.+++.++++.
T Consensus 19 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~ 96 (346)
T 4egb_A 19 YFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQ--DHPNYYFVKGEIQNGELLEHVIKE 96 (346)
T ss_dssp -----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTT--TCTTEEEEECCTTCHHHHHHHHHH
T ss_pred ccccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhc--cCCCeEEEEcCCCCHHHHHHHHhh
Confidence 4567889999999999999999999999997656888887653221 122211 124899999999999999999886
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
. ++|+|||+||... .. ...+.....+++|+.++.++++++... +. +++|++||.
T Consensus 97 ~-----~~d~Vih~A~~~~-------~~----~~~~~~~~~~~~nv~~~~~ll~a~~~~----~~------~~~v~~SS~ 150 (346)
T 4egb_A 97 R-----DVQVIVNFAAESH-------VD----RSIENPIPFYDTNVIGTVTLLELVKKY----PH------IKLVQVSTD 150 (346)
T ss_dssp H-----TCCEEEECCCCC--------------------CHHHHHHTHHHHHHHHHHHHS----TT------SEEEEEEEG
T ss_pred c-----CCCEEEECCcccc-------hh----hhhhCHHHHHHHHHHHHHHHHHHHHhc----CC------CEEEEeCch
Confidence 3 6999999999863 11 123456778999999999999998654 11 289999997
Q ss_pred ccccCC---------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc----------cccC
Q 023441 181 VGSIGD---------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP----------FQRN 241 (282)
Q Consensus 181 ~~~~~~---------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~----------~~~~ 241 (282)
...... .+......|+.+|.+.+.+++.++.+. +++++++.|+.+..+.... ....
T Consensus 151 ~vy~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~ 225 (346)
T 4egb_A 151 EVYGSLGKTGRFTEETPLAPNSPYSSSKASADMIALAYYKTY-----QLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEG 225 (346)
T ss_dssp GGGCCCCSSCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECEEESTTCCTTSHHHHHHHHHHTT
T ss_pred HHhCCCCcCCCcCCCCCCCCCChhHHHHHHHHHHHHHHHHHh-----CCCEEEEeecceeCcCCCccchHHHHHHHHHcC
Confidence 543221 122334789999999999999998876 6888889999988774321 0001
Q ss_pred ---------CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 242 ---------VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 242 ---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.....+...+++|++++.++.... .|..|.+.+++
T Consensus 226 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~---~g~~~~i~~~~ 269 (346)
T 4egb_A 226 KKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGR---VGEVYNIGGNN 269 (346)
T ss_dssp CCCEEETTSCCEECEEEHHHHHHHHHHHHHHCC---TTCEEEECCSC
T ss_pred CCceeeCCCCeEEeeEEHHHHHHHHHHHHhcCC---CCCEEEECCCC
Confidence 111234568999999999998654 67777765543
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=170.63 Aligned_cols=213 Identities=16% Similarity=0.116 Sum_probs=146.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccc--cccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL--KNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~--~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
|.+++|++|||||+|+||++++++|+++|++ |+++.|+....++...+ +.....++.++.+|++|.+++.++++
T Consensus 1 ~~~~~~~vlVTGatGfIG~~l~~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-- 76 (337)
T 2c29_D 1 MGSQSETVCVTGASGFIGSWLVMRLLERGYT--VRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIK-- 76 (337)
T ss_dssp -----CEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHT--
T ss_pred CCCCCCEEEEECCchHHHHHHHHHHHHCCCE--EEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHc--
Confidence 4568899999999999999999999999987 88888987643322211 11111368899999999998887765
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+|+|||+|+... .. ..+..+..+++|+.++.++++++.+... . +++|++||..
T Consensus 77 -----~~d~Vih~A~~~~-------~~-----~~~~~~~~~~~nv~gt~~ll~a~~~~~~---~------~riV~~SS~~ 130 (337)
T 2c29_D 77 -----GCTGVFHVATPMD-------FE-----SKDPENEVIKPTIEGMLGIMKSCAAAKT---V------RRLVFTSSAG 130 (337)
T ss_dssp -----TCSEEEECCCCCC-------SS-----CSSHHHHTHHHHHHHHHHHHHHHHHHSC---C------CEEEEECCGG
T ss_pred -----CCCEEEEeccccC-------CC-----CCChHHHHHHHHHHHHHHHHHHHHhCCC---c------cEEEEeeeHh
Confidence 5899999998542 11 0122346789999999999999876431 1 2899999986
Q ss_pred cccCCCCC-------------------CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--
Q 023441 182 GSIGDNRL-------------------GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-- 240 (282)
Q Consensus 182 ~~~~~~~~-------------------~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-- 240 (282)
+..+.... +....|+.+|.+.+.+++.++.+. ++++++++|+.+.++.......
T Consensus 131 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~~lrp~~v~Gp~~~~~~~~~ 205 (337)
T 2c29_D 131 TVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKEN-----NIDFITIIPTLVVGPFIMSSMPPS 205 (337)
T ss_dssp GTSCSSSCCSEECTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHH-----TCCEEEEEECEEESCCSCSSCCHH
T ss_pred hcccCCCCCcccCcccCCchhhhcccCCccchHHHHHHHHHHHHHHHHHHc-----CCcEEEEeCCceECCCCCCCCCch
Confidence 54321100 122369999999999988777654 7899999999998886432100
Q ss_pred ---------CC-------CCCCCCChHHHHHHHHHHHhhcCCCCCCcee
Q 023441 241 ---------NV-------PEGKLFTKEFSVQKLLNIINNIKSHDNGKFF 273 (282)
Q Consensus 241 ---------~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~ 273 (282)
.. +...+..++++|++++.++... ..+|.++
T Consensus 206 ~~~~~~~~~g~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~--~~~~~~~ 252 (337)
T 2c29_D 206 LITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENP--KAEGRYI 252 (337)
T ss_dssp HHHHTHHHHTCGGGHHHHTEEEEEEHHHHHHHHHHHHHCT--TCCEEEE
T ss_pred HHHHHHHHcCCCccccccCCCCEEEHHHHHHHHHHHhcCc--ccCceEE
Confidence 00 0112578999999999988652 3355543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=158.10 Aligned_cols=192 Identities=12% Similarity=0.096 Sum_probs=131.6
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcC-CCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKN-DKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G-~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+..|++|||||+|+||++++++|+++| ++ |++++|+.++.+... ..++.++++|++|+++++++++
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~--V~~~~R~~~~~~~~~------~~~~~~~~~Dl~d~~~~~~~~~---- 87 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTIK--QTLFARQPAKIHKPY------PTNSQIIMGDVLNHAALKQAMQ---- 87 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTEE--EEEEESSGGGSCSSC------CTTEEEEECCTTCHHHHHHHHT----
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCce--EEEEEcChhhhcccc------cCCcEEEEecCCCHHHHHHHhc----
Confidence 3445899999999999999999999999 66 999999887654321 2478999999999999988876
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.+|+||||+|... . ....+.+.+.+++++.+ +||++||..+.
T Consensus 88 ---~~D~vv~~a~~~~-------~----------------------~~~~~~~~~~~~~~~~~------~iV~iSS~~~~ 129 (236)
T 3qvo_A 88 ---GQDIVYANLTGED-------L----------------------DIQANSVIAAMKACDVK------RLIFVLSLGIY 129 (236)
T ss_dssp ---TCSEEEEECCSTT-------H----------------------HHHHHHHHHHHHHTTCC------EEEEECCCCC-
T ss_pred ---CCCEEEEcCCCCc-------h----------------------hHHHHHHHHHHHHcCCC------EEEEEecceec
Confidence 5899999998531 0 02245666677766544 99999998765
Q ss_pred cCCCCC----------CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---CCC-CCCCCC
Q 023441 184 IGDNRL----------GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR---NVP-EGKLFT 249 (282)
Q Consensus 184 ~~~~~~----------~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---~~~-~~~~~~ 249 (282)
...+.. .....|..++ ..+... ++++++|+||++.++....+.. ..+ .....+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~--gi~~~~vrPg~i~~~~~~~~~~~~~~~~~~~~~i~ 196 (236)
T 3qvo_A 130 DEVPGKFVEWNNAVIGEPLKPFRRAA-----------DAIEAS--GLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVS 196 (236)
T ss_dssp ---------------CGGGHHHHHHH-----------HHHHTS--CSEEEEEEECEEECCSCCCCEEECTTSCCSCSEEE
T ss_pred CCCCcccccchhhcccchHHHHHHHH-----------HHHHHC--CCCEEEEeCCcccCCCCcceEEeccCCCCCCcEEC
Confidence 432110 0011222222 223344 8999999999998886543221 112 234578
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++++|+.+++++++..... |+.+.+++...
T Consensus 197 ~~DvA~~i~~ll~~~~~~~-g~~~~i~~~~~ 226 (236)
T 3qvo_A 197 RKSVAALITDIIDKPEKHI-GENIGINQPGT 226 (236)
T ss_dssp HHHHHHHHHHHHHSTTTTT-TEEEEEECSSC
T ss_pred HHHHHHHHHHHHcCccccc-CeeEEecCCCC
Confidence 9999999999999766555 67777665543
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=166.29 Aligned_cols=213 Identities=13% Similarity=0.043 Sum_probs=148.2
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHh--cCCCcEEEEeecCCCc-------ccccccccccCCCceeEEEeeCCChhH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLE--KNDKGCVIATCRNPNG-------ATGLLDLKNRFPERLDVLQLDLTVEST 93 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~--~G~~~~vi~~~r~~~~-------~~~~~~~~~~~~~~v~~~~~Dls~~~~ 93 (282)
.|+++++++|||||+|+||++++++|++ +|++ |++++|+... .+.........+.++.++.+|++|.++
T Consensus 5 ~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 82 (362)
T 3sxp_A 5 DDELENQTILITGGAGFVGSNLAFHFQENHPKAK--VVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLD 82 (362)
T ss_dssp SCCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSE--EEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHH
T ss_pred chhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCe--EEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHH
Confidence 3678899999999999999999999999 8987 9999997652 111122222234578999999999998
Q ss_pred HHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeE
Q 023441 94 IEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAV 173 (282)
Q Consensus 94 ~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~ 173 (282)
++++ ...++|+||||||... . +.+.++..+++|+.++.++++++... + .+
T Consensus 83 ~~~~------~~~~~D~vih~A~~~~-------~------~~~~~~~~~~~Nv~gt~~ll~aa~~~----~-------~~ 132 (362)
T 3sxp_A 83 LRRL------EKLHFDYLFHQAAVSD-------T------TMLNQELVMKTNYQAFLNLLEIARSK----K-------AK 132 (362)
T ss_dssp HHHH------TTSCCSEEEECCCCCG-------G------GCCCHHHHHHHHTHHHHHHHHHHHHT----T-------CE
T ss_pred HHHh------hccCCCEEEECCccCC-------c------cccCHHHHHHHHHHHHHHHHHHHHHc----C-------Cc
Confidence 8876 2358999999999653 1 34567788999999999999998432 1 15
Q ss_pred EEEeeccccccCC-------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc---------
Q 023441 174 VANLSARVGSIGD-------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--------- 237 (282)
Q Consensus 174 iv~~ss~~~~~~~-------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--------- 237 (282)
+|++||....-.. .+......|+.+|++.+.+++.++.+ +.+..+.|+.+..+....
T Consensus 133 ~V~~SS~~vyg~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~-------~~~~~lR~~~v~Gp~~~~~~~~~~~~~ 205 (362)
T 3sxp_A 133 VIYASSAGVYGNTKAPNVVGKNESPENVYGFSKLCMDEFVLSHSND-------NVQVGLRYFNVYGPREFYKEKTASMVL 205 (362)
T ss_dssp EEEEEEGGGGCSCCSSBCTTSCCCCSSHHHHHHHHHHHHHHHTTTT-------SCEEEEEECSEESTTCGGGGGGSCHHH
T ss_pred EEEeCcHHHhCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhcc-------CCEEEEEeCceeCcCCCCCCcchhHHH
Confidence 9999995432111 11223456999999999999987765 344455666665443211
Q ss_pred -----cccC---------CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 238 -----FQRN---------VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 238 -----~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
.... .....+..++++|++++.++... .+| .|.+.++
T Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ai~~~~~~~---~~g-~~~i~~~ 256 (362)
T 3sxp_A 206 QLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMKAQ---KSG-VYNVGYS 256 (362)
T ss_dssp HHHHHHHTTSEEECSGGGCCEEECEEHHHHHHHHHHHTTCS---SCE-EEEESCS
T ss_pred HHHHHHHhCCCeEEECCCCeEEccEEHHHHHHHHHHHHhcC---CCC-EEEeCCC
Confidence 0000 11123557999999999988754 357 6666443
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.6e-21 Score=167.38 Aligned_cols=229 Identities=15% Similarity=0.074 Sum_probs=157.1
Q ss_pred ccccccccccCcEEEEecCCCchhHHHHHHHHhcC-------CCcEEEEeecCCCcccccccccccCCCceeEEEeeCCC
Q 023441 18 SSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKN-------DKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV 90 (282)
Q Consensus 18 ~~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G-------~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~ 90 (282)
++....++++|+++|||||+|+||.+++++|+++| ++ |++++|+...... ..+.++.++.+|++|
T Consensus 4 ~~~~~~~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~--V~~~~r~~~~~~~------~~~~~~~~~~~Dl~d 75 (342)
T 2hrz_A 4 SSGRENLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEK--FTLIDVFQPEAPA------GFSGAVDARAADLSA 75 (342)
T ss_dssp CCSCCCSCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEE--EEEEESSCCCCCT------TCCSEEEEEECCTTS
T ss_pred ccCCCCCCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCce--EEEEEccCCcccc------ccCCceeEEEcCCCC
Confidence 34455667899999999999999999999999999 56 9999998754321 123578999999999
Q ss_pred hhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccc
Q 023441 91 ESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERD 170 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~ 170 (282)
.+++.++++ +++|+||||||... ..+.+++...+++|+.++.++++++.+...+++.
T Consensus 76 ~~~~~~~~~------~~~d~vih~A~~~~------------~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~----- 132 (342)
T 2hrz_A 76 PGEAEKLVE------ARPDVIFHLAAIVS------------GEAELDFDKGYRINLDGTRYLFDAIRIANGKDGY----- 132 (342)
T ss_dssp TTHHHHHHH------TCCSEEEECCCCCH------------HHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHh------cCCCEEEECCccCc------------ccccccHHHHHHHHHHHHHHHHHHHHhcccccCC-----
Confidence 999888775 37999999999752 1234568889999999999999998775422100
Q ss_pred eeEEEEeeccccccCCC--------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEe--cccccCCCCc----
Q 023441 171 VAVVANLSARVGSIGDN--------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLH--PGTVDTDLSR---- 236 (282)
Q Consensus 171 ~~~iv~~ss~~~~~~~~--------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~--Pg~v~t~~~~---- 236 (282)
.+++|++||........ +......|+.+|++.+.+++.++.+..-....+|+..+. ||...++...
T Consensus 133 ~~~iv~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~ 212 (342)
T 2hrz_A 133 KPRVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSN 212 (342)
T ss_dssp CCEEEEEEEGGGCCSSCCSSBCTTCCCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHH
T ss_pred CcEEEEeCchHhhCCCCCCCcCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHH
Confidence 13899999986543211 111456899999999999998887642221246676666 8875543211
Q ss_pred ---ccccCC----C-----CCCCCChHHHHHHHHHHHhhcCC-CCCCceeecCC
Q 023441 237 ---PFQRNV----P-----EGKLFTKEFSVQKLLNIINNIKS-HDNGKFFAWDG 277 (282)
Q Consensus 237 ---~~~~~~----~-----~~~~~~~~~~a~~~~~~~~~~~~-~~~g~~~~~d~ 277 (282)
...... + ......++++++.++.++..... ...+..+.+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~~~~~~~~~~~~~~~~~~~~ni~g 266 (342)
T 2hrz_A 213 ILREPLVGQEAVLPVPESIRHWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMPG 266 (342)
T ss_dssp HHHHHHTTCCEEECSCTTCEEEEECHHHHHHHHHHHHHSCHHHHCSCCEEECCC
T ss_pred HHHHHhcCCCeeccCCCccceeeEehHHHHHHHHHHHhccccccCCccEEEcCC
Confidence 000010 1 11235789999999998864321 01344555544
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-20 Score=165.22 Aligned_cols=210 Identities=13% Similarity=0.001 Sum_probs=154.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++.+++++|||||+|+||.+++++|+++|++ |++++|+........ ..++.++.+|++|.+++.++++
T Consensus 25 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~------~~~v~~~~~Dl~d~~~~~~~~~---- 92 (379)
T 2c5a_A 25 WPSENLKISITGAGGFIASHIARRLKHEGHY--VIASDWKKNEHMTED------MFCDEFHLVDLRVMENCLKVTE---- 92 (379)
T ss_dssp CTTSCCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSCCSSSCGG------GTCSEEEECCTTSHHHHHHHHT----
T ss_pred ccccCCeEEEECCccHHHHHHHHHHHHCCCe--EEEEECCCccchhhc------cCCceEEECCCCCHHHHHHHhC----
Confidence 4456789999999999999999999999987 999999876543211 2368899999999998887764
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++|++|||||... .. ..+.+.+...+++|+.++.++++++... +. +++|++||....
T Consensus 93 ---~~d~Vih~A~~~~-------~~---~~~~~~~~~~~~~Nv~g~~~ll~a~~~~----~~------~~~V~~SS~~v~ 149 (379)
T 2c5a_A 93 ---GVDHVFNLAADMG-------GM---GFIQSNHSVIMYNNTMISFNMIEAARIN----GI------KRFFYASSACIY 149 (379)
T ss_dssp ---TCSEEEECCCCCC-------CH---HHHTTCHHHHHHHHHHHHHHHHHHHHHT----TC------SEEEEEEEGGGS
T ss_pred ---CCCEEEECceecC-------cc---cccccCHHHHHHHHHHHHHHHHHHHHHc----CC------CEEEEEeehhee
Confidence 6999999999753 11 1113457788999999999999998643 21 289999997543
Q ss_pred cCCC---------------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------
Q 023441 184 IGDN---------------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------- 238 (282)
Q Consensus 184 ~~~~---------------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------- 238 (282)
.... +......|+.+|.+.+.+++.++.+. ++++++++||.+.++.....
T Consensus 150 ~~~~~~~~~~~~~~E~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~ 224 (379)
T 2c5a_A 150 PEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDF-----GIECRIGRFHNIYGPFGTWKGGREKAPAAF 224 (379)
T ss_dssp CGGGSSSSSSCEECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECCEECTTSCCSSSCCCHHHHH
T ss_pred CCCCCCCccCCCcCcccCCCCCCCChhHHHHHHHHHHHHHHHHHH-----CCCEEEEEeCceeCcCCCcccccccHHHHH
Confidence 2110 23345689999999999999998875 68999999999987753210
Q ss_pred ----ccCC----------CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 239 ----QRNV----------PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 239 ----~~~~----------~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
.... ....+..++++|+.++.++... .+..+.+.+
T Consensus 225 ~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~----~~~~~ni~~ 273 (379)
T 2c5a_A 225 CRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD----FREPVNIGS 273 (379)
T ss_dssp HHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS----CCSCEEECC
T ss_pred HHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHHHHHhhcc----CCCeEEeCC
Confidence 0010 1124557899999999998753 234455443
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=166.21 Aligned_cols=220 Identities=12% Similarity=0.041 Sum_probs=159.1
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc-ccccccccC----CCceeEEEeeCCChhHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT-GLLDLKNRF----PERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~-~~~~~~~~~----~~~v~~~~~Dls~~~~~~~~ 97 (282)
.++++++++|||||+|+||++++++|+++|++ |++++|+..... .+....... +.++.++.+|++|.+++.++
T Consensus 22 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 99 (352)
T 1sb8_A 22 ELPAQPKVWLITGVAGFIGSNLLETLLKLDQK--VVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNA 99 (352)
T ss_dssp HHHHSCCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHH
T ss_pred hcCccCCeEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHH
Confidence 35677899999999999999999999999987 999999765321 111111111 24789999999999988877
Q ss_pred HHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 98 AKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
++ ++|+||||||... .. .+.++++..+++|+.++.++++++.+. +. +++|++
T Consensus 100 ~~-------~~d~vih~A~~~~-------~~----~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~------~~~v~~ 151 (352)
T 1sb8_A 100 CA-------GVDYVLHQAALGS-------VP----RSINDPITSNATNIDGFLNMLIAARDA----KV------QSFTYA 151 (352)
T ss_dssp HT-------TCSEEEECCSCCC-------HH----HHHHCHHHHHHHHTHHHHHHHHHHHHT----TC------SEEEEE
T ss_pred hc-------CCCEEEECCcccC-------ch----hhhhCHHHHHHHHHHHHHHHHHHHHHc----CC------CEEEEe
Confidence 65 6999999999753 11 133567788999999999999998753 21 289999
Q ss_pred eccccccCCC--------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-----------
Q 023441 178 SARVGSIGDN--------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------- 238 (282)
Q Consensus 178 ss~~~~~~~~--------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------- 238 (282)
||........ +......|+.+|++.+.+++.++.++ ++++++++||.+.++.....
T Consensus 152 SS~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~ 226 (352)
T 1sb8_A 152 ASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCY-----GFSTIGLRYFNVFGRRQDPNGAYAAVIPKWT 226 (352)
T ss_dssp EEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCCCEEEEECCEECTTCCCCSTTCCHHHHHH
T ss_pred ccHHhcCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc-----CCCEEEEEECceeCcCCCCCcchhhHHHHHH
Confidence 9976543211 11235689999999999999998886 68888889999987754211
Q ss_pred ---ccCCC---------CCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 239 ---QRNVP---------EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 239 ---~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
....+ ...+..++++|++++.++... ....|..|.+.++
T Consensus 227 ~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~~ni~~~ 277 (352)
T 1sb8_A 227 SSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAG-LDARNQVYNIAVG 277 (352)
T ss_dssp HHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCC-GGGCSEEEEESCS
T ss_pred HHHHCCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhcc-ccCCCceEEeCCC
Confidence 00111 124567899999998888642 2345677776543
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=165.99 Aligned_cols=165 Identities=15% Similarity=0.102 Sum_probs=124.4
Q ss_pred ccccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHH
Q 023441 18 SSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 18 ~~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~ 97 (282)
.++....++++|++|||||+|+||.+++++|+++|++ |++++|+... .++.++.+|++|.+++.++
T Consensus 9 ~~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~--V~~~~r~~~~------------~~~~~~~~Dl~d~~~~~~~ 74 (347)
T 4id9_A 9 HHSSGLVPRGSHMILVTGSAGRVGRAVVAALRTQGRT--VRGFDLRPSG------------TGGEEVVGSLEDGQALSDA 74 (347)
T ss_dssp ------------CEEEETTTSHHHHHHHHHHHHTTCC--EEEEESSCCS------------SCCSEEESCTTCHHHHHHH
T ss_pred CCCCcccccCCCEEEEECCCChHHHHHHHHHHhCCCE--EEEEeCCCCC------------CCccEEecCcCCHHHHHHH
Confidence 3445667889999999999999999999999999988 9999998754 3678899999999988877
Q ss_pred HHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 98 AKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
++ ++|++||+|+... . +...++..+++|+.++.++++++... +. +++|++
T Consensus 75 ~~-------~~d~vih~A~~~~-------~------~~~~~~~~~~~nv~~~~~ll~a~~~~----~~------~~~V~~ 124 (347)
T 4id9_A 75 IM-------GVSAVLHLGAFMS-------W------APADRDRMFAVNVEGTRRLLDAASAA----GV------RRFVFA 124 (347)
T ss_dssp HT-------TCSEEEECCCCCC-------S------SGGGHHHHHHHHTHHHHHHHHHHHHT----TC------SEEEEE
T ss_pred Hh-------CCCEEEECCcccC-------c------chhhHHHHHHHHHHHHHHHHHHHHHc----CC------CeEEEE
Confidence 76 6999999999763 1 12345788999999999999998652 22 289999
Q ss_pred eccccccC----------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEeccccc
Q 023441 178 SARVGSIG----------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVD 231 (282)
Q Consensus 178 ss~~~~~~----------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~ 231 (282)
||....-. ..+......|+.+|.+.+.+++.++.+. +++++++.|+.+.
T Consensus 125 SS~~vyg~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~ 183 (347)
T 4id9_A 125 SSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKLLGEELVRFHQRSG-----AMETVILRFSHTQ 183 (347)
T ss_dssp EEGGGTTTTSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS-----SSEEEEEEECEEE
T ss_pred CCHHHhCCCCCCCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHhc-----CCceEEEccceEe
Confidence 99653321 1223456789999999999999988874 7889999999887
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=169.31 Aligned_cols=182 Identities=14% Similarity=0.052 Sum_probs=132.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc-----------------ccccccccCCCceeEEEe
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT-----------------GLLDLKNRFPERLDVLQL 86 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~-----------------~~~~~~~~~~~~v~~~~~ 86 (282)
+.-++.++|||||+|.||.+++++|+++|++ |++++|...... ...+.....+.++.++.+
T Consensus 7 ~~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~ 84 (404)
T 1i24_A 7 HHHHGSRVMVIGGDGYCGWATALHLSKKNYE--VCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVG 84 (404)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEES
T ss_pred cccCCCeEEEeCCCcHHHHHHHHHHHhCCCe--EEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEEC
Confidence 3457899999999999999999999999987 888887643210 111111111357899999
Q ss_pred eCCChhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCC
Q 023441 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTG 166 (282)
Q Consensus 87 Dls~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g 166 (282)
|++|.+++.++++.. ++|+||||||... . .....+++.+...+++|+.++.++++++.+.-. +
T Consensus 85 Dl~d~~~~~~~~~~~-----~~D~Vih~A~~~~-------~-~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~--~-- 147 (404)
T 1i24_A 85 DICDFEFLAESFKSF-----EPDSVVHFGEQRS-------A-PYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGE--E-- 147 (404)
T ss_dssp CTTSHHHHHHHHHHH-----CCSEEEECCSCCC-------H-HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCT--T--
T ss_pred CCCCHHHHHHHHhcc-----CCCEEEECCCCCC-------c-cchhhCccchhhhHHHHHHHHHHHHHHHHHhCC--C--
Confidence 999999999888765 6999999999753 1 111224555677899999999999999875421 0
Q ss_pred CccceeEEEEeeccccccCC---------------------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEE
Q 023441 167 IERDVAVVANLSARVGSIGD---------------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILL 225 (282)
Q Consensus 167 ~~~~~~~iv~~ss~~~~~~~---------------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i 225 (282)
.++|++||....-.. .+......|+.+|++.+.+++.++.++ +++++++
T Consensus 148 -----~~~V~~SS~~vyg~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----gi~~~iv 217 (404)
T 1i24_A 148 -----CHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-----GIRATDL 217 (404)
T ss_dssp -----CEEEEECCGGGGCCCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCEEEEE
T ss_pred -----cEEEEeCcHHHhCCCCCCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhc-----CCeEEEE
Confidence 289999997543211 123345679999999999999998876 7899999
Q ss_pred ecccccCCC
Q 023441 226 HPGTVDTDL 234 (282)
Q Consensus 226 ~Pg~v~t~~ 234 (282)
+||.+.++.
T Consensus 218 rp~~v~Gp~ 226 (404)
T 1i24_A 218 NQGVVYGVK 226 (404)
T ss_dssp EECEEECSC
T ss_pred ecceeeCCC
Confidence 999998774
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=155.86 Aligned_cols=204 Identities=13% Similarity=0.050 Sum_probs=148.8
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
+++|||||+|+||++++++|+++|++ |++++|+..+.... ..++.++.+|++|.+++.++++ ++
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~-------~~~~~~~~~Dl~d~~~~~~~~~-------~~ 68 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFE--VTAVVRHPEKIKIE-------NEHLKVKKADVSSLDEVCEVCK-------GA 68 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCE--EEEECSCGGGCCCC-------CTTEEEECCCTTCHHHHHHHHT-------TC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCE--EEEEEcCcccchhc-------cCceEEEEecCCCHHHHHHHhc-------CC
Confidence 68999999999999999999999977 99999987665422 2578999999999999888776 58
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC--
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD-- 186 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~-- 186 (282)
|++|||+|... .. ...+++|+.++.++++++... +. .++|++||..+..+.
T Consensus 69 d~vi~~a~~~~-------~~----------~~~~~~n~~~~~~l~~~~~~~----~~------~~~v~~Ss~~~~~~~~~ 121 (227)
T 3dhn_A 69 DAVISAFNPGW-------NN----------PDIYDETIKVYLTIIDGVKKA----GV------NRFLMVGGAGSLFIAPG 121 (227)
T ss_dssp SEEEECCCC-----------------------CCSHHHHHHHHHHHHHHHT----TC------SEEEEECCSTTSEEETT
T ss_pred CEEEEeCcCCC-------CC----------hhHHHHHHHHHHHHHHHHHHh----CC------CEEEEeCChhhccCCCC
Confidence 99999998642 10 125888999999999887653 21 289999997654331
Q ss_pred -----CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--ccc--C-----CCCCCCCChHH
Q 023441 187 -----NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--FQR--N-----VPEGKLFTKEF 252 (282)
Q Consensus 187 -----~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--~~~--~-----~~~~~~~~~~~ 252 (282)
.+......|+.+|++.+.+.+.++.+. ++++++++||.+.++.... +.. . .....+..+++
T Consensus 122 ~~~~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~D 196 (227)
T 3dhn_A 122 LRLMDSGEVPENILPGVKALGEFYLNFLMKEK-----EIDWVFFSPAADMRPGVRTGRYRLGKDDMIVDIVGNSHISVED 196 (227)
T ss_dssp EEGGGTTCSCGGGHHHHHHHHHHHHHTGGGCC-----SSEEEEEECCSEEESCCCCCCCEEESSBCCCCTTSCCEEEHHH
T ss_pred CccccCCcchHHHHHHHHHHHHHHHHHHhhcc-----CccEEEEeCCcccCCCccccceeecCCCcccCCCCCcEEeHHH
Confidence 122345789999999998888776532 7999999999987664321 110 0 11133568999
Q ss_pred HHHHHHHHHhhcCCCCCCceeec-CCcccCC
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAW-DGQEIPW 282 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~-d~~~~~~ 282 (282)
+|+.++.++... ...|+.+.+ +.+..+|
T Consensus 197 va~ai~~~l~~~--~~~g~~~~~~~~~~~~~ 225 (227)
T 3dhn_A 197 YAAAMIDELEHP--KHHQERFTIGYLEHHHH 225 (227)
T ss_dssp HHHHHHHHHHSC--CCCSEEEEEECCSCCC-
T ss_pred HHHHHHHHHhCc--cccCcEEEEEeehhccc
Confidence 999999999864 356666664 4444444
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.7e-20 Score=160.59 Aligned_cols=209 Identities=11% Similarity=0.066 Sum_probs=154.3
Q ss_pred cEEEEecCCCchhHHHHHHHHhc--CCCcEEEEeecCCCcc-cccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEK--NDKGCVIATCRNPNGA-TGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~--G~~~~vi~~~r~~~~~-~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
+++|||||+|+||.+++++|+++ |++ |++++|+.... ....+.+. +.++.++.+|++|.+++.++++
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~--V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~------ 74 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVH--VTVLDKLTYAGNKANLEAIL--GDRVELVVGDIADAELVDKLAA------ 74 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCE--EEEEECCCTTCCGGGTGGGC--SSSEEEEECCTTCHHHHHHHHT------
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCE--EEEEeCCCCCCChhHHhhhc--cCCeEEEECCCCCHHHHHHHhh------
Confidence 68999999999999999999999 666 99999976421 11111111 3578999999999998887765
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
.+|+||||||... . +.+.++++..+++|+.++.++++++.+.- .++|++||....-.
T Consensus 75 -~~d~vih~A~~~~-------~----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~-----------~~~v~~SS~~vyg~ 131 (348)
T 1oc2_A 75 -KADAIVHYAAESH-------N----DNSLNDPSPFIHTNFIGTYTLLEAARKYD-----------IRFHHVSTDEVYGD 131 (348)
T ss_dssp -TCSEEEECCSCCC-------H----HHHHHCCHHHHHHHTHHHHHHHHHHHHHT-----------CEEEEEEEGGGGCC
T ss_pred -cCCEEEECCcccC-------c----cchhhCHHHHHHHHHHHHHHHHHHHHHhC-----------CeEEEecccceeCC
Confidence 4699999999752 1 22345677889999999999999998751 28999998653211
Q ss_pred C--------------------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--c-----
Q 023441 186 D--------------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--F----- 238 (282)
Q Consensus 186 ~--------------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--~----- 238 (282)
. .+......|+.+|++.+.+++.++.++ ++++++++|+.+.++.... +
T Consensus 132 ~~~~~~~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----gi~~~ilrp~~v~G~~~~~~~~~~~~~ 206 (348)
T 1oc2_A 132 LPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF-----GVKATISNCSNNYGPYQHIEKFIPRQI 206 (348)
T ss_dssp BCCGGGSTTTTCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECCEESTTCCTTSHHHHHH
T ss_pred CcccccccccccccCCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh-----CCCEEEEeeceeeCCCCCccchHHHHH
Confidence 0 123455789999999999999999886 6899999999998876421 0
Q ss_pred ---ccC---------CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 239 ---QRN---------VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 239 ---~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
... .....+..++++|+.++.++... .+|..|.+.++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~---~~g~~~~i~~~ 255 (348)
T 1oc2_A 207 TNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKG---RMGETYLIGAD 255 (348)
T ss_dssp HHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHC---CTTCEEEECCS
T ss_pred HHHHcCCCceEecCCCceEeeEEHHHHHHHHHHHhhCC---CCCCeEEeCCC
Confidence 001 11124567999999999998753 36777777654
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.7e-21 Score=161.54 Aligned_cols=184 Identities=14% Similarity=0.072 Sum_probs=141.3
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
.|++|||||+|+||++++++|+++|++ |++++|+..+.. ..++.++.+|++|.+++.++++ +
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~-------~ 63 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHE--VRLSDIVDLGAA---------EAHEEIVACDLADAQAVHDLVK-------D 63 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEE--EEECCSSCCCCC---------CTTEEECCCCTTCHHHHHHHHT-------T
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCE--EEEEeCCCcccc---------CCCccEEEccCCCHHHHHHHHc-------C
Confidence 378999999999999999999999976 999999875421 1357899999999998887765 5
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|+||||||... .+.++..+++|+.++.++++++.+. +. +++|++||.......+
T Consensus 64 ~d~vi~~a~~~~---------------~~~~~~~~~~n~~~~~~l~~a~~~~----~~------~~iv~~SS~~~~~~~~ 118 (267)
T 3ay3_A 64 CDGIIHLGGVSV---------------ERPWNDILQANIIGAYNLYEAARNL----GK------PRIVFASSNHTIGYYP 118 (267)
T ss_dssp CSEEEECCSCCS---------------CCCHHHHHHHTHHHHHHHHHHHHHT----TC------CEEEEEEEGGGSTTSB
T ss_pred CCEEEECCcCCC---------------CCCHHHHHHHHHHHHHHHHHHHHHh----CC------CEEEEeCCHHHhCCCC
Confidence 899999999752 2346778999999999999998652 22 2899999986542211
Q ss_pred ---------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccc-cCCCCcccccCCCCCCCCChHHHHHHH
Q 023441 188 ---------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTV-DTDLSRPFQRNVPEGKLFTKEFSVQKL 257 (282)
Q Consensus 188 ---------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v-~t~~~~~~~~~~~~~~~~~~~~~a~~~ 257 (282)
+......|+.+|++++.+++.++.+. ++++++++||.+ .++.... ....+.+++++|+.+
T Consensus 119 ~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----gi~~~~lrp~~v~~~~~~~~-----~~~~~~~~~dva~~~ 188 (267)
T 3ay3_A 119 RTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKF-----DIETLNIRIGSCFPKPKDAR-----MMATWLSVDDFMRLM 188 (267)
T ss_dssp TTSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHTT-----CCCEEEEEECBCSSSCCSHH-----HHHHBCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHc-----CCCEEEEeceeecCCCCCCC-----eeeccccHHHHHHHH
Confidence 11234689999999999999886543 789999999998 4432111 123456899999999
Q ss_pred HHHHhhc
Q 023441 258 LNIINNI 264 (282)
Q Consensus 258 ~~~~~~~ 264 (282)
+.++...
T Consensus 189 ~~~~~~~ 195 (267)
T 3ay3_A 189 KRAFVAP 195 (267)
T ss_dssp HHHHHSS
T ss_pred HHHHhCC
Confidence 9998754
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-20 Score=158.86 Aligned_cols=205 Identities=17% Similarity=0.162 Sum_probs=148.8
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++|||||+|+||++++++|+++|++ |++++|....... .. ..++.++.+|++|.+++.+++++. ++|
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G~~--V~~~~r~~~~~~~---~~---~~~~~~~~~Dl~~~~~~~~~~~~~-----~~d 68 (311)
T 2p5y_A 2 RVLVTGGAGFIGSHIVEDLLARGLE--VAVLDNLATGKRE---NV---PKGVPFFRVDLRDKEGVERAFREF-----RPT 68 (311)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCE--EEEECCCSSCCGG---GS---CTTCCEECCCTTCHHHHHHHHHHH-----CCS
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCE--EEEEECCCcCchh---hc---ccCeEEEECCCCCHHHHHHHHHhc-----CCC
Confidence 6999999999999999999999987 8888885433211 11 136788999999999998888752 699
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC---
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD--- 186 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~--- 186 (282)
++||+|+... . ..+.+++...+++|+.++.++++++... +. +++|++||..+..+.
T Consensus 69 ~vi~~a~~~~-------~----~~~~~~~~~~~~~N~~g~~~l~~a~~~~----~~------~~iv~~SS~~~~~g~~~~ 127 (311)
T 2p5y_A 69 HVSHQAAQAS-------V----KVSVEDPVLDFEVNLLGGLNLLEACRQY----GV------EKLVFASTGGAIYGEVPE 127 (311)
T ss_dssp EEEECCSCCC-------H----HHHHHCHHHHHHHHTHHHHHHHHHHHHT----TC------SEEEEEEEHHHHHCCCCT
T ss_pred EEEECccccC-------c----hhhhhCHHHHHHHHHHHHHHHHHHHHHh----CC------CEEEEeCCChhhcCCCCC
Confidence 9999999752 1 1234567788999999999999988642 22 289999997221111
Q ss_pred -------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------ccCC----
Q 023441 187 -------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------QRNV---- 242 (282)
Q Consensus 187 -------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------~~~~---- 242 (282)
.+......|+.+|++++.+++.++.++ +++++++.|+.+.++..... ....
T Consensus 128 ~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (311)
T 2p5y_A 128 GERAEETWPPRPKSPYAASKAAFEHYLSVYGQSY-----GLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTL 202 (311)
T ss_dssp TCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEE
T ss_pred CCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHc-----CCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEE
Confidence 112245689999999999999998876 68899999999987753210 0010
Q ss_pred ----------CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 243 ----------PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 243 ----------~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
....+..++++|+.++.++... |..|.+.++
T Consensus 203 ~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~-----~~~~~i~~~ 243 (311)
T 2p5y_A 203 YARKTPGDEGCVRDYVYVGDVAEAHALALFSL-----EGIYNVGTG 243 (311)
T ss_dssp ECSSSTTSCCCEECEEEHHHHHHHHHHHHHHC-----CEEEEESCS
T ss_pred EecccCCCCCeEEeeEEHHHHHHHHHHHHhCC-----CCEEEeCCC
Confidence 1123457899999999988752 566666544
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=164.58 Aligned_cols=214 Identities=13% Similarity=0.059 Sum_probs=143.1
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec-CCCccccccc--ccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-NPNGATGLLD--LKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r-~~~~~~~~~~--~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
||++|||||+|+||++++++|+++|++ |++..| +.+..+.... .+.....++.++.+|++|.++++++++
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----- 73 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYS--VNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIE----- 73 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCE--EEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHT-----
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCE--EEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHc-----
Confidence 689999999999999999999999987 888888 6533221111 111111367889999999999888775
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
.+|+|||||+... .. ..+.++..+++|+.+++++++++.+.. +. +++|++||..+..
T Consensus 74 --~~d~vih~A~~~~-------~~-----~~~~~~~~~~~nv~gt~~l~~aa~~~~---~~------~~iV~~SS~~~~~ 130 (322)
T 2p4h_X 74 --GCVGIFHTASPID-------FA-----VSEPEEIVTKRTVDGALGILKACVNSK---TV------KRFIYTSSGSAVS 130 (322)
T ss_dssp --TCSEEEECCCCC--------------------CHHHHHHHHHHHHHHHHHTTCS---SC------CEEEEEEEGGGTS
T ss_pred --CCCEEEEcCCccc-------CC-----CCChHHHHHHHHHHHHHHHHHHHHhcC---Cc------cEEEEeccHHHcc
Confidence 5899999996421 10 011234578999999999999987642 11 3899999987543
Q ss_pred CCCCC-------------------CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc------
Q 023441 185 GDNRL-------------------GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ------ 239 (282)
Q Consensus 185 ~~~~~-------------------~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~------ 239 (282)
+.... +....|+.||++.+.+++.++.+. ++++++++|+.+.++......
T Consensus 131 ~~~~~~~~~~e~~~~~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~~-----gi~~~~lrp~~v~g~~~~~~~~~~~~~ 205 (322)
T 2p4h_X 131 FNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQN-----GIDVVTLILPFIVGRFVCPKLPDSIEK 205 (322)
T ss_dssp CSSSCCSEECTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHT-----TCCEEEEEECEEESCCCSSSCCHHHHH
T ss_pred cCCCCCeecCCccccchhhhcccCcccccHHHHHHHHHHHHHHHHHhc-----CCcEEEEcCCceECCCCCCCCCchHHH
Confidence 21100 011159999998887776665542 789999999999988643210
Q ss_pred ------cC---CCCC--CCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 240 ------RN---VPEG--KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 240 ------~~---~~~~--~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.. .+.. .+..++++|++++.++... ..+|.+. ..++.
T Consensus 206 ~~~~~~g~~~~~~~~~~~~i~v~Dva~a~~~~~~~~--~~~g~~~-~~~~~ 253 (322)
T 2p4h_X 206 ALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENS--VPGGRYN-CSPFI 253 (322)
T ss_dssp HTHHHHSCGGGCCEEEEEEEEHHHHHHHHHHHHHSC--CCCEEEE-CCCEE
T ss_pred HHHHHhCCCccCcCCCcCEEEHHHHHHHHHHHhhCc--CCCCCEE-EcCCC
Confidence 00 0101 3568999999999998652 3567644 55443
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=164.37 Aligned_cols=220 Identities=13% Similarity=0.054 Sum_probs=159.2
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc-CC----CceeEEEeeCCChhHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR-FP----ERLDVLQLDLTVESTIEA 96 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~-~~----~~v~~~~~Dls~~~~~~~ 96 (282)
..|.++++++|||||+|+||.+++++|+++|++ |++++|+........+.+.. .+ .++.++.+|++|.+++.+
T Consensus 19 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 96 (351)
T 3ruf_A 19 QQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQV--VIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQ 96 (351)
T ss_dssp HHHHHSCCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHH
T ss_pred hhCCCCCCeEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHH
Confidence 346788999999999999999999999999987 99999987654432222111 11 579999999999998887
Q ss_pred HHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEE
Q 023441 97 SAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVAN 176 (282)
Q Consensus 97 ~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~ 176 (282)
+++ ++|+|||+||... . ....++....+++|+.++.++++++...- . .++|+
T Consensus 97 ~~~-------~~d~Vih~A~~~~-------~----~~~~~~~~~~~~~nv~~~~~ll~a~~~~~----~------~~~v~ 148 (351)
T 3ruf_A 97 VMK-------GVDHVLHQAALGS-------V----PRSIVDPITTNATNITGFLNILHAAKNAQ----V------QSFTY 148 (351)
T ss_dssp HTT-------TCSEEEECCCCCC-------H----HHHHHCHHHHHHHHTHHHHHHHHHHHHTT----C------SEEEE
T ss_pred Hhc-------CCCEEEECCccCC-------c----chhhhCHHHHHHHHHHHHHHHHHHHHHcC----C------CEEEE
Confidence 776 6999999999753 1 12234566789999999999999886542 1 28999
Q ss_pred eeccccccCC--------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------
Q 023441 177 LSARVGSIGD--------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------- 238 (282)
Q Consensus 177 ~ss~~~~~~~--------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------- 238 (282)
+||....... .+......|+.+|.+.+.+++.++.+. +++++++.|+.+..+.....
T Consensus 149 ~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~ 223 (351)
T 3ruf_A 149 AASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY-----GFKTIGLRYFNVFGRRQDPNGAYAAVIPKW 223 (351)
T ss_dssp EEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCCCEEEEECSEESTTCCCCSTTCCHHHHH
T ss_pred EecHHhcCCCCCCCCccCCCCCCCChhHHHHHHHHHHHHHHHHHh-----CCCEEEEeeCceeCcCCCCCcchhhHHHHH
Confidence 9997654221 111235689999999999999998886 67788889999877643211
Q ss_pred ----ccC---------CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 239 ----QRN---------VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 239 ----~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
... .....+...+++|++++.++... ....|..|.+.+
T Consensus 224 ~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~~ni~~ 274 (351)
T 3ruf_A 224 TAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAK-DSAKDNIYNVAV 274 (351)
T ss_dssp HHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCC-GGGCSEEEEESC
T ss_pred HHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhhc-cccCCCEEEeCC
Confidence 000 11124567899999999888752 234566676543
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=159.49 Aligned_cols=209 Identities=14% Similarity=0.122 Sum_probs=152.1
Q ss_pred EEEEecCCCchhHHHHHHHHhc---C---CCcEEEEeecCCCc--ccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEK---N---DKGCVIATCRNPNG--ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~---G---~~~~vi~~~r~~~~--~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
++|||||+|+||++++++|+++ | ++ |++++|+... .+.+.+.. .+.++.++.+|++|.+++.+++
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~--V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~--- 74 (337)
T 1r6d_A 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADE--VIVLDSLTYAGNRANLAPVD--ADPRLRFVHGDIRDAGLLAREL--- 74 (337)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSE--EEEEECCCTTCCGGGGGGGT--TCTTEEEEECCTTCHHHHHHHT---
T ss_pred eEEEECCccHHHHHHHHHHHhhhcCCCCceE--EEEEECCCccCchhhhhhcc--cCCCeEEEEcCCCCHHHHHHHh---
Confidence 6999999999999999999996 6 65 8889987532 12222221 1357899999999998887776
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++|++|||||... . +.+.++++..+++|+.++.++++++.+... +++|++||..
T Consensus 75 ----~~~d~Vih~A~~~~-------~----~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~----------~~~v~~SS~~ 129 (337)
T 1r6d_A 75 ----RGVDAIVHFAAESH-------V----DRSIAGASVFTETNVQGTQTLLQCAVDAGV----------GRVVHVSTNQ 129 (337)
T ss_dssp ----TTCCEEEECCSCCC-------H----HHHHHCCHHHHHHHTHHHHHHHHHHHHTTC----------CEEEEEEEGG
T ss_pred ----cCCCEEEECCCccC-------c----hhhhhCHHHHHHHHHHHHHHHHHHHHHcCC----------CEEEEecchH
Confidence 47999999999752 1 123345678899999999999999887532 2899999965
Q ss_pred cccC--------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc----------cccCC-
Q 023441 182 GSIG--------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP----------FQRNV- 242 (282)
Q Consensus 182 ~~~~--------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~----------~~~~~- 242 (282)
..-. ..+......|+.+|++.+.+++.++.++ ++++++++|+.+.++.... .....
T Consensus 130 vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~ 204 (337)
T 1r6d_A 130 VYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTY-----GLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGT 204 (337)
T ss_dssp GGCCCSSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCC
T ss_pred HhCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH-----CCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCC
Confidence 3211 1123456789999999999999998876 6788888999998775321 00010
Q ss_pred --------CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 243 --------PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 243 --------~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
....+..++++|+.++.++... .+|..|.+.++
T Consensus 205 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~---~~g~~~~v~~~ 245 (337)
T 1r6d_A 205 LPLYGDGANVREWVHTDDHCRGIALVLAGG---RAGEIYHIGGG 245 (337)
T ss_dssp EEEETTSCCEEEEEEHHHHHHHHHHHHHHC---CTTCEEEECCC
T ss_pred cEEeCCCCeeEeeEeHHHHHHHHHHHHhCC---CCCCEEEeCCC
Confidence 1123457899999999998753 36777776654
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9e-20 Score=162.90 Aligned_cols=214 Identities=11% Similarity=0.071 Sum_probs=153.8
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcC-CCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKN-DKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G-~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.+.++++++|||||+|+||.+++++|+++| ++ |++++|+......... ...++.++.+|++|.+++.++++
T Consensus 27 ~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~--V~~~~r~~~~~~~~l~----~~~~v~~~~~Dl~d~~~l~~~~~-- 98 (377)
T 2q1s_A 27 ASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQ--VHVVDNLLSAEKINVP----DHPAVRFSETSITDDALLASLQD-- 98 (377)
T ss_dssp CGGGTTCEEEEETTTSHHHHHHHHHHHHTTCSE--EEEECCCTTCCGGGSC----CCTTEEEECSCTTCHHHHHHCCS--
T ss_pred hHHhCCCEEEEECCccHHHHHHHHHHHHcCCce--EEEEECCCCCchhhcc----CCCceEEEECCCCCHHHHHHHhh--
Confidence 345788999999999999999999999999 77 9999998765322111 13578999999999988776654
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
++|+||||||... . ..+.+++...+++|+.++.++++++...- +. +++|++||..
T Consensus 99 -----~~d~Vih~A~~~~-------~----~~~~~~~~~~~~~nv~~~~~ll~a~~~~~---~~------~~~V~~SS~~ 153 (377)
T 2q1s_A 99 -----EYDYVFHLATYHG-------N----QSSIHDPLADHENNTLTTLKLYERLKHFK---RL------KKVVYSAAGC 153 (377)
T ss_dssp -----CCSEEEECCCCSC-------H----HHHHHCHHHHHHHHTHHHHHHHHHHTTCS---SC------CEEEEEEEC-
T ss_pred -----CCCEEEECCCccC-------c----hhhhhCHHHHHHHHHHHHHHHHHHHHHhC---CC------CeEEEeCCHH
Confidence 7999999999753 1 12234567889999999999999885420 11 2899999965
Q ss_pred ccc----------CCC---CC-CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCC---------cc-
Q 023441 182 GSI----------GDN---RL-GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS---------RP- 237 (282)
Q Consensus 182 ~~~----------~~~---~~-~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~---------~~- 237 (282)
..- ... +. .....|+.+|.+.+.+++.++.+. +++++++.||.+.++.. ..
T Consensus 154 vyg~~~~~~~~~~E~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~G~~~~~~~g~~~~~~~ 228 (377)
T 2q1s_A 154 SIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQH-----QLPTVRARFQNVYGPGEILGAGRWRGTPA 228 (377)
T ss_dssp -------------CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECCEECTTCCTTCSSCCSSGG
T ss_pred HcCCCCCCCcCcccccccccccCCCCchHHHHHHHHHHHHHHHHHh-----CCCEEEEeeccEECCCCcccccccccCcc
Confidence 321 111 22 445689999999999999998876 68899999999987654 11
Q ss_pred -----c--------ccCCC---------CCCCCChHHHHHH-HHHHHhhcCCCCCCceeecCCc
Q 023441 238 -----F--------QRNVP---------EGKLFTKEFSVQK-LLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 238 -----~--------~~~~~---------~~~~~~~~~~a~~-~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
+ ....+ ...+...+++|+. ++.++.... +| .|.+.++
T Consensus 229 ~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~i~~~~~~~~---~g-~~~i~~~ 288 (377)
T 2q1s_A 229 TVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTP---GG-VYNIASG 288 (377)
T ss_dssp GTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEEHHHHHHHHHHHHHHCCT---TE-EEECCCC
T ss_pred cccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHHhcCC---CC-eEEecCC
Confidence 0 01111 1134468999999 998887642 67 6766553
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-19 Score=159.09 Aligned_cols=218 Identities=13% Similarity=0.065 Sum_probs=150.5
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc--cccccccc----CCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT--GLLDLKNR----FPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~--~~~~~~~~----~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|++|||||+|+||.+++++|+++|++ |++++|+..... .+..+... .+.++.++.+|++|.+++.++++.+
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 101 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYE--VHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV- 101 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH-
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCE--EEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhc-
Confidence 68999999999999999999999987 999999865421 12221111 2357899999999999999988865
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++|+||||||... . ..+.++++..+++|+.++.++++++.+...++ . +++|++||...
T Consensus 102 ----~~d~vih~A~~~~-------~----~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~-~------~~iv~~SS~~~ 159 (375)
T 1t2a_A 102 ----KPTEIYNLGAQSH-------V----KISFDLAEYTADVDGVGTLRLLDAVKTCGLIN-S------VKFYQASTSEL 159 (375)
T ss_dssp ----CCSEEEECCSCCC-------H----HHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTT-T------CEEEEEEEGGG
T ss_pred ----CCCEEEECCCccc-------c----cccccCHHHHHHHHHHHHHHHHHHHHHhCCCc-c------ceEEEecchhh
Confidence 6999999999753 1 11345677889999999999999998765321 1 28999999765
Q ss_pred ccCC--------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-------------c-cc
Q 023441 183 SIGD--------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-------------F-QR 240 (282)
Q Consensus 183 ~~~~--------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~-------------~-~~ 240 (282)
.... .+......|+.+|++++.+++.++.++ ++.+..+.|+.+..+.... . ..
T Consensus 160 ~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g 234 (375)
T 1t2a_A 160 YGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY-----NLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLG 234 (375)
T ss_dssp TCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHT
T ss_pred hCCCCCCCCCccCCCCCCChhHHHHHHHHHHHHHHHHHh-----CCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcC
Confidence 4321 122345689999999999999999886 4566666665543331110 0 00
Q ss_pred C---------CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 241 N---------VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 241 ~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
. .....+...+++|++++.++.... .+.+...++..
T Consensus 235 ~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~~---~~~~ni~~~~~ 279 (375)
T 1t2a_A 235 QLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDE---PEDFVIATGEV 279 (375)
T ss_dssp SCSCEEESCTTCEECCEEHHHHHHHHHHHHHSSS---CCCEEECCSCC
T ss_pred CCceeEeCCCCceeeeEEHHHHHHHHHHHHhcCC---CceEEEeCCCc
Confidence 0 111245678999999999987543 34444444443
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=159.33 Aligned_cols=218 Identities=15% Similarity=0.112 Sum_probs=151.0
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc------ccccccccc-cCCCceeEEEeeCCChhHHHHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG------ATGLLDLKN-RFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~------~~~~~~~~~-~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
+|++|||||+|+||.+++++|+++|++ |++++|+... .....+.+. ..+.++.++.+|++|.+++.++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYL--PVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKK 79 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCC--EEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHh
Confidence 689999999999999999999999988 8888886543 222111111 1245789999999999999888775
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
. ++|+||||||... .. .+.+.++..+++|+.++.++++++.. .+. +++|++||.
T Consensus 80 ~-----~~d~vih~A~~~~-------~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~------~~iv~~SS~ 133 (348)
T 1ek6_A 80 Y-----SFMAVIHFAGLKA-------VG----ESVQKPLDYYRVNLTGTIQLLEIMKA----HGV------KNLVFSSSA 133 (348)
T ss_dssp C-----CEEEEEECCSCCC-------HH----HHHHCHHHHHHHHHHHHHHHHHHHHH----TTC------CEEEEEEEG
T ss_pred c-----CCCEEEECCCCcC-------cc----chhhchHHHHHHHHHHHHHHHHHHHH----hCC------CEEEEECcH
Confidence 2 7999999999753 11 12345678899999999999987653 222 289999997
Q ss_pred ccccCC--------CCC-CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCC------------ccc-
Q 023441 181 VGSIGD--------NRL-GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS------------RPF- 238 (282)
Q Consensus 181 ~~~~~~--------~~~-~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~------------~~~- 238 (282)
...... .+. +....|+.+|++++.+++.++.+ . . ++++..+.|+.+..+.. ..+
T Consensus 134 ~~~g~~~~~~~~E~~~~~p~~~~Y~~sK~~~e~~~~~~~~~-~-~--~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~ 209 (348)
T 1ek6_A 134 TVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQA-D-K--TWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLM 209 (348)
T ss_dssp GGGCSCSSSSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHH-C-T--TCEEEEEEECEEECCCTTSSCCCCCSSSCCSHH
T ss_pred HHhCCCCCCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHhc-C-C--CcceEEEeeccccCCCcccccCcCcccchhhHH
Confidence 654211 111 22578999999999999999887 2 2 58888889987765421 000
Q ss_pred -------c-cCC---------------CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 239 -------Q-RNV---------------PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 239 -------~-~~~---------------~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
. ... ....+...+++|++++.++........+..|.+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~ 271 (348)
T 1ek6_A 210 PYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGT 271 (348)
T ss_dssp HHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred HHHHHHHHhcCCCeEEeCCcccCCCCceEEeeEEHHHHHHHHHHHHhcccccCCceEEEeCC
Confidence 0 000 01134578999999999887542222235666543
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-20 Score=160.00 Aligned_cols=207 Identities=16% Similarity=0.125 Sum_probs=152.1
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
+++|||||+|+||++++++|+++|++ |++++|+........ ...+.++.+|++|.+ +.++++ .
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~------~~~~~~~~~Dl~d~~-~~~~~~-------~- 63 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYE--VVVVDNLSSGRREFV------NPSAELHVRDLKDYS-WGAGIK-------G- 63 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE--EEEECCCSSCCGGGS------CTTSEEECCCTTSTT-TTTTCC-------C-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCE--EEEEeCCCCCchhhc------CCCceEEECccccHH-HHhhcC-------C-
Confidence 47999999999999999999999987 999999876644322 357899999999987 654443 3
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC---
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG--- 185 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~--- 185 (282)
|++|||||... . ..+.+.+...+++|+.++.++++++... +. +++|++||....-.
T Consensus 64 d~vih~A~~~~-------~----~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~------~~iv~~SS~~vyg~~~~ 122 (312)
T 3ko8_A 64 DVVFHFAANPE-------V----RLSTTEPIVHFNENVVATFNVLEWARQT----GV------RTVVFASSSTVYGDADV 122 (312)
T ss_dssp SEEEECCSSCS-------S----SGGGSCHHHHHHHHHHHHHHHHHHHHHH----TC------CEEEEEEEGGGGCSCSS
T ss_pred CEEEECCCCCC-------c----hhhhhCHHHHHHHHHHHHHHHHHHHHHc----CC------CEEEEeCcHHHhCCCCC
Confidence 99999999642 1 2234567788999999999999988543 11 28999999764421
Q ss_pred -----CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccC----------
Q 023441 186 -----DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRN---------- 241 (282)
Q Consensus 186 -----~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~---------- 241 (282)
..+......|+.+|.+.+.+++.++.++ ++++++++|+.+.++..... ...
T Consensus 123 ~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~-----g~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g 197 (312)
T 3ko8_A 123 IPTPEEEPYKPISVYGAAKAAGEVMCATYARLF-----GVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDG 197 (312)
T ss_dssp SSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECEEECTTCCSSHHHHHHHHHHHCTTEEEEC---
T ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-----CCCEEEEeeccccCcCCCCChHHHHHHHHHhCCCCeEEcCCC
Confidence 1223446789999999999999999987 78999999999988853310 000
Q ss_pred CCCCCCCChHHHHHHHHHHHhhc-CCCCCCceeecCCc
Q 023441 242 VPEGKLFTKEFSVQKLLNIINNI-KSHDNGKFFAWDGQ 278 (282)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~~g~~~~~d~~ 278 (282)
.....+..++++|++++.++... .....|..+.+.++
T Consensus 198 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~~ 235 (312)
T 3ko8_A 198 TQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNV 235 (312)
T ss_dssp -CEECEEEHHHHHHHHHHHHHHHHHSCCSEEEEEESCS
T ss_pred CeEEeeEEHHHHHHHHHHHHHhccccCCCCcEEEEcCC
Confidence 01123457999999999999862 13345666666543
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-20 Score=160.93 Aligned_cols=204 Identities=12% Similarity=0.075 Sum_probs=145.6
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
.++|||||+|+||.+++++|+++|++ |++++|+....+.+.. .++.++.+|++|.+++.++++ ++
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~l~~------~~~~~~~~Dl~d~~~~~~~~~-------~~ 78 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGHD--LVLIHRPSSQIQRLAY------LEPECRVAEMLDHAGLERALR-------GL 78 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCE--EEEEECTTSCGGGGGG------GCCEEEECCTTCHHHHHHHTT-------TC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCE--EEEEecChHhhhhhcc------CCeEEEEecCCCHHHHHHHHc-------CC
Confidence 38999999999999999999999987 9999998776543211 268899999999988887765 59
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|++||+||... ...+.++..+++|+.++.++++++.+.- . +++|++||.........
T Consensus 79 d~vih~a~~~~-------------~~~~~~~~~~~~n~~~~~~l~~a~~~~~----~------~~~v~~SS~~~~~~~~~ 135 (342)
T 2x4g_A 79 DGVIFSAGYYP-------------SRPRRWQEEVASALGQTNPFYAACLQAR----V------PRILYVGSAYAMPRHPQ 135 (342)
T ss_dssp SEEEEC-------------------------CHHHHHHHHHHHHHHHHHHHT----C------SCEEEECCGGGSCCCTT
T ss_pred CEEEECCccCc-------------CCCCCHHHHHHHHHHHHHHHHHHHHHcC----C------CeEEEECCHHhhCcCCC
Confidence 99999999752 1134567789999999999999988741 1 28999999766432111
Q ss_pred ---------CCC----cccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCC-c----c----cccCCC---
Q 023441 189 ---------LGG----WHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS-R----P----FQRNVP--- 243 (282)
Q Consensus 189 ---------~~~----~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~-~----~----~~~~~~--- 243 (282)
... ...|+.+|.+.+.+++.++.+ +++++++.||.+.++.. + . .....+
T Consensus 136 ~~~~~E~~~~~p~~~~~~~Y~~sK~~~e~~~~~~~~~------g~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 209 (342)
T 2x4g_A 136 GLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQARN------GLPVVIGIPGMVLGELDIGPTTGRVITAIGNGEMTHY 209 (342)
T ss_dssp SSCBCTTCCCSSCCTTSCHHHHHHHHHHHHHHHHHHT------TCCEEEEEECEEECSCCSSCSTTHHHHHHHTTCCCEE
T ss_pred CCCCCCCCCCCccccccChHHHHHHHHHHHHHHHhhc------CCcEEEEeCCceECCCCccccHHHHHHHHHcCCCccc
Confidence 111 568999999999999988762 58888899999988754 2 0 001111
Q ss_pred ---CCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 244 ---EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 244 ---~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
......++++|+.++.++.... .|..|.+.++.
T Consensus 210 ~~~~~~~i~v~Dva~~~~~~~~~~~---~g~~~~v~~~~ 245 (342)
T 2x4g_A 210 VAGQRNVIDAAEAGRGLLMALERGR---IGERYLLTGHN 245 (342)
T ss_dssp ECCEEEEEEHHHHHHHHHHHHHHSC---TTCEEEECCEE
T ss_pred cCCCcceeeHHHHHHHHHHHHhCCC---CCceEEEcCCc
Confidence 1124589999999999998644 27777776654
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-19 Score=158.00 Aligned_cols=212 Identities=12% Similarity=0.078 Sum_probs=141.5
Q ss_pred ccccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHH
Q 023441 18 SSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 18 ~~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~ 97 (282)
++......++++++|||||+|+||.+++++|+++|++ |++++|+......... .. .++.++.+|++|.+++.++
T Consensus 11 ~~~~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~l~---~~-~~~~~~~~Dl~d~~~~~~~ 84 (333)
T 2q1w_A 11 SSGLVPRGSHMKKVFITGICGQIGSHIAELLLERGDK--VVGIDNFATGRREHLK---DH-PNLTFVEGSIADHALVNQL 84 (333)
T ss_dssp ----------CCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCSSCCGGGSC---CC-TTEEEEECCTTCHHHHHHH
T ss_pred cCceeeecCCCCEEEEeCCccHHHHHHHHHHHHCCCE--EEEEECCCccchhhHh---hc-CCceEEEEeCCCHHHHHHH
Confidence 3444556678899999999999999999999999987 9999998654322111 11 4788999999999999888
Q ss_pred HHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 98 AKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
++. +++|+||||||... .. +.++++ +++|+.++.++++++.+. +. +++|++
T Consensus 85 ~~~-----~~~D~vih~A~~~~-------~~-----~~~~~~--~~~N~~~~~~l~~a~~~~----~~------~~iV~~ 135 (333)
T 2q1w_A 85 IGD-----LQPDAVVHTAASYK-------DP-----DDWYND--TLTNCVGGSNVVQAAKKN----NV------GRFVYF 135 (333)
T ss_dssp HHH-----HCCSEEEECCCCCS-------CT-----TCHHHH--HHHHTHHHHHHHHHHHHT----TC------SEEEEE
T ss_pred Hhc-----cCCcEEEECceecC-------CC-----ccCChH--HHHHHHHHHHHHHHHHHh----CC------CEEEEE
Confidence 875 27999999999864 11 122333 899999999999998763 22 289999
Q ss_pred eccccccC---CCCC------CCc-ccchhhHHHHHHHHHH-HHHHhccCCCCeEEEEEecccccCCCC---------cc
Q 023441 178 SARVGSIG---DNRL------GGW-HSYRASKAALNQLTKS-VSVEFGRKKDPVICILLHPGTVDTDLS---------RP 237 (282)
Q Consensus 178 ss~~~~~~---~~~~------~~~-~~Y~~sKa~~~~l~~~-la~e~~~~~~~i~v~~i~Pg~v~t~~~---------~~ 237 (282)
||...... .... ... ..|+.+|++++.+++. ++ .+..+.|+.+..+.. +.
T Consensus 136 SS~~~~g~~~~~~~~~~~E~~~p~~~~Y~~sK~~~E~~~~~s~~----------~~~ilR~~~v~gp~~~~~~~~~~~~~ 205 (333)
T 2q1w_A 136 QTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANEDYLEYSGL----------DFVTFRLANVVGPRNVSGPLPIFFQR 205 (333)
T ss_dssp EEGGGGCSCCCSSSBCTTSCCCCTTCHHHHHHHHHHHHHHHHTC----------CEEEEEESEEESTTCCSSHHHHHHHH
T ss_pred CcHHHhCCCcccCCCCcCCCCCCCCCchHHHHHHHHHHHHhhhC----------CeEEEeeceEECcCCcCcHHHHHHHH
Confidence 99765420 1100 223 6899999999999887 54 233445655544321 00
Q ss_pred ccc------CCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 238 FQR------NVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 238 ~~~------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
... .........++++|+.++.++.... |..+.+.++
T Consensus 206 ~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~----g~~~~v~~~ 248 (333)
T 2q1w_A 206 LSEGKKCFVTKARRDFVFVKDLARATVRAVDGVG----HGAYHFSSG 248 (333)
T ss_dssp HHTTCCCEEEECEECEEEHHHHHHHHHHHHTTCC----CEEEECSCS
T ss_pred HHcCCeeeCCCceEeeEEHHHHHHHHHHHHhcCC----CCEEEeCCC
Confidence 000 0112345689999999999987543 677777654
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-19 Score=159.46 Aligned_cols=213 Identities=13% Similarity=0.044 Sum_probs=144.1
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc-----cccccccccCCC-ceeEEEeeCCChhHHHHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA-----TGLLDLKNRFPE-RLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~-----~~~~~~~~~~~~-~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|++|||||+|+||.+++++|+++|++ |++++|+.... +.+.......+. ++.++.+|++|.+++.++++.+
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 105 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYE--VHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVI- 105 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHH-
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCE--EEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhc-
Confidence 79999999999999999999999987 99999987652 211111111123 7889999999999999988865
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++|+||||||... . ..+.+++...+++|+.++.++++++.+...+++.+ +++|++||...
T Consensus 106 ----~~d~Vih~A~~~~-------~----~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~-----~~~v~~SS~~v 165 (381)
T 1n7h_A 106 ----KPDEVYNLAAQSH-------V----AVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRT-----VKYYQAGSSEM 165 (381)
T ss_dssp ----CCSEEEECCSCCC-------H----HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCC-----CEEEEEEEGGG
T ss_pred ----CCCEEEECCcccC-------c----cccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCc-----cEEEEeCcHHH
Confidence 6999999999753 1 12345677889999999999999999876542211 28999999764
Q ss_pred ccC-------CCCCCCcccchhhHHHHHHHHHHHHHHhccCC-CCeEEEEEecccccCCC-------Cccc---------
Q 023441 183 SIG-------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKK-DPVICILLHPGTVDTDL-------SRPF--------- 238 (282)
Q Consensus 183 ~~~-------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~-~~i~v~~i~Pg~v~t~~-------~~~~--------- 238 (282)
.-. ..+......|+.+|++.+.+++.++.+++..- +...++.+.||...+.+ ....
T Consensus 166 yg~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~ 245 (381)
T 1n7h_A 166 FGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLF 245 (381)
T ss_dssp GTTSCSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEE
T ss_pred hCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEE
Confidence 321 11234457899999999999999998863210 01122333444322210 0000
Q ss_pred -ccCCCCCCCCChHHHHHHHHHHHhhc
Q 023441 239 -QRNVPEGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 239 -~~~~~~~~~~~~~~~a~~~~~~~~~~ 264 (282)
........+..++++|++++.++...
T Consensus 246 ~g~~~~~~~~v~v~Dva~a~~~~~~~~ 272 (381)
T 1n7h_A 246 LGNLQASRDWGFAGDYVEAMWLMLQQE 272 (381)
T ss_dssp ESCTTCEEECEEHHHHHHHHHHHHTSS
T ss_pred eCCCCceeeeEEHHHHHHHHHHHHhCC
Confidence 00011234568999999999998754
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=156.69 Aligned_cols=204 Identities=16% Similarity=0.134 Sum_probs=146.1
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|++|||||+|+||++++++|+++| . .|++..|+....+.. ...+.++.+|++| +++.++++ ++
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~-~v~~~~~~~~~~~~~-------~~~~~~~~~Dl~~-~~~~~~~~-------~~ 64 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN-E-IVVIDNLSSGNEEFV-------NEAARLVKADLAA-DDIKDYLK-------GA 64 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS-C-EEEECCCSSCCGGGS-------CTTEEEECCCTTT-SCCHHHHT-------TC
T ss_pred CEEEEECCCchHHHHHHHHHHhCC-C-EEEEEcCCCCChhhc-------CCCcEEEECcCCh-HHHHHHhc-------CC
Confidence 589999999999999999999999 4 255544444332211 3478999999999 88877765 69
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC---
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG--- 185 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~--- 185 (282)
|++||+|+... . ..+.+.++..+++|+.++.++++++... +. +++|++||....-.
T Consensus 65 d~vih~a~~~~-------~----~~~~~~~~~~~~~nv~~~~~l~~~~~~~----~~------~~iv~~SS~~vyg~~~~ 123 (313)
T 3ehe_A 65 EEVWHIAANPD-------V----RIGAENPDEIYRNNVLATYRLLEAMRKA----GV------SRIVFTSTSTVYGEAKV 123 (313)
T ss_dssp SEEEECCCCCC-------C----C-CCCCHHHHHHHHHHHHHHHHHHHHHH----TC------CEEEEECCGGGGCSCSS
T ss_pred CEEEECCCCCC-------h----hhhhhCHHHHHHHHHHHHHHHHHHHHHc----CC------CeEEEeCchHHhCcCCC
Confidence 99999999642 1 2234567788999999999999986542 22 28999999664421
Q ss_pred -----CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc---------ccc----------C
Q 023441 186 -----DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP---------FQR----------N 241 (282)
Q Consensus 186 -----~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~---------~~~----------~ 241 (282)
..+......|+.+|.+.+.+++.++.++ +++++++.|+.+..+.... ... .
T Consensus 124 ~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g 198 (313)
T 3ehe_A 124 IPTPEDYPTHPISLYGASKLACEALIESYCHTF-----DMQAWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNG 198 (313)
T ss_dssp SSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHT-----TCEEEEEECSCEESTTCCCSHHHHHHHHHHHCTTEEEESTTS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc-----CCCEEEEeeccccCcCCCcChHHHHHHHHHcCCCceEEeCCC
Confidence 1233456789999999999999999886 7899999999998764321 000 0
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 242 VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
.....+...+++|++++.++. ....|..|.+.++
T Consensus 199 ~~~~~~i~v~Dva~a~~~~~~---~~~~~~~~ni~~~ 232 (313)
T 3ehe_A 199 EQNKSYIYISDCVDAMLFGLR---GDERVNIFNIGSE 232 (313)
T ss_dssp CCEECCEEHHHHHHHHHHHTT---CCSSEEEEECCCS
T ss_pred CeEEeEEEHHHHHHHHHHHhc---cCCCCceEEECCC
Confidence 111245678999999999887 3345666665443
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-19 Score=158.55 Aligned_cols=206 Identities=13% Similarity=0.029 Sum_probs=138.0
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc--ccccccccc---CCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA--TGLLDLKNR---FPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~--~~~~~~~~~---~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
+|++|||||+|+||++++++|+++|++ |++++|+.... +.+...... .+.++.++.+|++|.+++.++++..
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 77 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYE--VHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV- 77 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE--EEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH-
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE--EEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhc-
Confidence 478999999999999999999999987 99999986542 112221111 1357899999999999999988865
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++|++|||||... . ..+.+++...+++|+.++.++++++.+...++ . +++|++||...
T Consensus 78 ----~~d~vih~A~~~~-------~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~------~~iv~~SS~~v 135 (372)
T 1db3_A 78 ----QPDEVYNLGAMSH-------V----AVSFESPEYTADVDAMGTLRLLEAIRFLGLEK-K------TRFYQASTSEL 135 (372)
T ss_dssp ----CCSEEEECCCCCT-------T----TTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTT-T------CEEEEEEEGGG
T ss_pred ----CCCEEEECCcccC-------c----cccccCHHHHHHHHHHHHHHHHHHHHHhCCCC-C------cEEEEeCChhh
Confidence 6999999999753 1 11234567789999999999999998765321 1 28999999754
Q ss_pred ccC--------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc-------------ccc-c
Q 023441 183 SIG--------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR-------------PFQ-R 240 (282)
Q Consensus 183 ~~~--------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~-------------~~~-~ 240 (282)
... ..+......|+.+|++++.+++.++.+++ +.+..+.|..+..+... ... .
T Consensus 136 ~g~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~-----~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g 210 (372)
T 1db3_A 136 YGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYG-----MYACNGILFNHESPRRGETFVTRKITRAIANIAQG 210 (372)
T ss_dssp GTTCCSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC-----CCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTT
T ss_pred hCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHHhC-----CCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcC
Confidence 321 11223457899999999999999998863 33434444333222100 000 0
Q ss_pred C---------CCCCCCCChHHHHHHHHHHHhh
Q 023441 241 N---------VPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 241 ~---------~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
. .....+...+++|+.++.++..
T Consensus 211 ~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~ 242 (372)
T 1db3_A 211 LESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQ 242 (372)
T ss_dssp SCCCEEESCTTCEECCEEHHHHHHHHHHTTSS
T ss_pred CCCceeecCCCceeeeeEHHHHHHHHHHHHhc
Confidence 0 1112456789999999887764
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-19 Score=160.21 Aligned_cols=174 Identities=15% Similarity=0.106 Sum_probs=129.7
Q ss_pred CcEEEEecCCCchhHHHHHHHH-hcCCCcEEEEeecCCCcc---------cccccccccC-----CCc---eeEEEeeCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLL-EKNDKGCVIATCRNPNGA---------TGLLDLKNRF-----PER---LDVLQLDLT 89 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la-~~G~~~~vi~~~r~~~~~---------~~~~~~~~~~-----~~~---v~~~~~Dls 89 (282)
++++|||||+|+||.+++++|+ ++|++ |++++|+.... +.+.+.+.+. ..+ +.++.+|++
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 79 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHS--VVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR 79 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCE--EEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCE--EEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCC
Confidence 4589999999999999999999 99987 88899876542 2221111111 124 899999999
Q ss_pred ChhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCcc
Q 023441 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIER 169 (282)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~ 169 (282)
|.+++.+++++ ++++|+||||||... .. .+.+.++..+++|+.++.++++++... +.
T Consensus 80 d~~~~~~~~~~----~~~~d~vih~A~~~~-------~~----~~~~~~~~~~~~Nv~g~~~ll~a~~~~----~~---- 136 (397)
T 1gy8_A 80 NEDFLNGVFTR----HGPIDAVVHMCAFLA-------VG----ESVRDPLKYYDNNVVGILRLLQAMLLH----KC---- 136 (397)
T ss_dssp CHHHHHHHHHH----SCCCCEEEECCCCCC-------HH----HHHHCHHHHHHHHHHHHHHHHHHHHHT----TC----
T ss_pred CHHHHHHHHHh----cCCCCEEEECCCccC-------cC----cchhhHHHHHHHHhHHHHHHHHHHHHh----CC----
Confidence 99998887763 456999999999763 11 134567789999999999999986542 22
Q ss_pred ceeEEEEeeccccccCCC---------------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC
Q 023441 170 DVAVVANLSARVGSIGDN---------------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233 (282)
Q Consensus 170 ~~~~iv~~ss~~~~~~~~---------------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~ 233 (282)
+++|++||....-... +......|+.+|++.+.+++.++.++ ++++++++|+.+..+
T Consensus 137 --~~iv~~SS~~v~g~~~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~-----gi~~~ilRp~~v~G~ 208 (397)
T 1gy8_A 137 --DKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY-----GIKGICLRYFNACGA 208 (397)
T ss_dssp --CEEEEEEEGGGTBSCCC-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECEEECC
T ss_pred --CEEEEECCHHHhCCCCcccccccccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHH-----CCcEEEEeccceeCC
Confidence 2899999965432111 11125689999999999999999887 689999999988655
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-19 Score=153.84 Aligned_cols=207 Identities=12% Similarity=-0.019 Sum_probs=144.8
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
...++++|||||+|+||.+++++|+++|++ |++++|+...... ..+.+. .+.++.++.+|++|.+++.++++..
T Consensus 11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~-- 85 (335)
T 1rpn_A 11 GSMTRSALVTGITGQDGAYLAKLLLEKGYR--VHGLVARRSSDTRWRLRELG-IEGDIQYEDGDMADACSVQRAVIKA-- 85 (335)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCCSSCCCHHHHHTT-CGGGEEEEECCTTCHHHHHHHHHHH--
T ss_pred cccCCeEEEECCCChHHHHHHHHHHHCCCe--EEEEeCCCccccccchhhcc-ccCceEEEECCCCCHHHHHHHHHHc--
Confidence 446789999999999999999999999987 9999998765321 111111 1347899999999999999988765
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++|++|||||... . ..+.+++...+++|+.++.++++++.+.-. . +++|++||....
T Consensus 86 ---~~d~Vih~A~~~~-------~----~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~---~------~~~v~~SS~~v~ 142 (335)
T 1rpn_A 86 ---QPQEVYNLAAQSF-------V----GASWNQPVTTGVVDGLGVTHLLEAIRQFSP---E------TRFYQASTSEMF 142 (335)
T ss_dssp ---CCSEEEECCSCCC-------H----HHHTTSHHHHHHHHTHHHHHHHHHHHHHCT---T------SEEEEEEEGGGG
T ss_pred ---CCCEEEECccccc-------h----hhhhhChHHHHHHHHHHHHHHHHHHHHhCC---C------CeEEEEeCHHHh
Confidence 6999999999752 1 112345678899999999999999875411 0 289999997543
Q ss_pred cCC--------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-c-------------ccC
Q 023441 184 IGD--------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-F-------------QRN 241 (282)
Q Consensus 184 ~~~--------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~-~-------------~~~ 241 (282)
... .+......|+.+|++.+.+++.++.++ ++.+..+.|+.+..+.... + ...
T Consensus 143 g~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~ 217 (335)
T 1rpn_A 143 GLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESF-----GLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGK 217 (335)
T ss_dssp CSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCcccCCCCCChhHHHHHHHHHHHHHHHHHc-----CCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCC
Confidence 221 112234679999999999999998876 4566667787665442110 0 000
Q ss_pred ---------CCCCCCCChHHHHHHHHHHHhhc
Q 023441 242 ---------VPEGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 242 ---------~~~~~~~~~~~~a~~~~~~~~~~ 264 (282)
.....+...+++|++++.++...
T Consensus 218 ~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~ 249 (335)
T 1rpn_A 218 QQELRLGNVDAKRDWGFAGDYVEAMWLMLQQD 249 (335)
T ss_dssp CSCEEESCTTCEEECEEHHHHHHHHHHHHHSS
T ss_pred CceEEeCCCcceeceEEHHHHHHHHHHHHhcC
Confidence 01123457799999999998754
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=151.90 Aligned_cols=166 Identities=13% Similarity=0.083 Sum_probs=128.7
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
+++|||||+|+||.+++++|+++|++ |++++|+...... .+ ..++.++.+|++|.+++.+++++ .++
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~---~~---~~~~~~~~~D~~~~~~~~~~~~~-----~~~ 68 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEGLS--VVVVDNLQTGHED---AI---TEGAKFYNGDLRDKAFLRDVFTQ-----ENI 68 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCSSCCGG---GS---CTTSEEEECCTTCHHHHHHHHHH-----SCE
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCE--EEEEeCCCcCchh---hc---CCCcEEEECCCCCHHHHHHHHhh-----cCC
Confidence 58999999999999999999999987 8888887654321 11 23788999999999998888765 379
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC--
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD-- 186 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~-- 186 (282)
|++||+||... .. .+.++++..+++|+.++.++++++... +. +++|++||.......
T Consensus 69 d~vih~a~~~~-------~~----~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~------~~~v~~Ss~~~~~~~~~ 127 (330)
T 2c20_A 69 EAVMHFAADSL-------VG----VSMEKPLQYYNNNVYGALCLLEVMDEF----KV------DKFIFSSTAATYGEVDV 127 (330)
T ss_dssp EEEEECCCCCC-------HH----HHHHSHHHHHHHHHHHHHHHHHHHHHT----TC------CEEEEECCGGGGCSCSS
T ss_pred CEEEECCcccC-------cc----ccccCHHHHHHHHhHHHHHHHHHHHHc----CC------CEEEEeCCceeeCCCCC
Confidence 99999999753 11 134567788999999999999987542 22 289999997643211
Q ss_pred ------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC
Q 023441 187 ------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233 (282)
Q Consensus 187 ------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~ 233 (282)
.+......|+.+|++.+.+++.++.++ +++++++.|+.+..+
T Consensus 128 ~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~ilrp~~v~G~ 175 (330)
T 2c20_A 128 DLITEETMTNPTNTYGETKLAIEKMLHWYSQAS-----NLRYKIFRYFNVAGA 175 (330)
T ss_dssp SSBCTTSCCCCSSHHHHHHHHHHHHHHHHHHTS-----SCEEEEEECSEEECC
T ss_pred CCCCcCCCCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEecCcccCC
Confidence 122345789999999999999988775 688999999888665
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-20 Score=155.41 Aligned_cols=183 Identities=16% Similarity=0.026 Sum_probs=136.3
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.++++++||||+|+||++++++|+++|....|++++|+..+ . ..++.++.+|++|.+++.+++
T Consensus 3 ~~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~-~---------~~~~~~~~~D~~~~~~~~~~~------- 65 (215)
T 2a35_A 3 STPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-E---------HPRLDNPVGPLAELLPQLDGS------- 65 (215)
T ss_dssp -CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-C---------CTTEECCBSCHHHHGGGCCSC-------
T ss_pred CCCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc-c---------CCCceEEeccccCHHHHHHhh-------
Confidence 35789999999999999999999999981139999998765 1 246888899999888776554
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
+|++|||+|... . +.+.+++.+++|+.++.++++++.+. +. +++|++||.....
T Consensus 66 --~d~vi~~a~~~~-------~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~------~~~v~~Ss~~~~~- 119 (215)
T 2a35_A 66 --IDTAFCCLGTTI-------K------EAGSEEAFRAVDFDLPLAVGKRALEM----GA------RHYLVVSALGADA- 119 (215)
T ss_dssp --CSEEEECCCCCH-------H------HHSSHHHHHHHHTHHHHHHHHHHHHT----TC------CEEEEECCTTCCT-
T ss_pred --hcEEEECeeecc-------c------cCCCHHHHHHhhHHHHHHHHHHHHHc----CC------CEEEEECCcccCC-
Confidence 899999999752 1 13457788899999999999987653 22 2899999987652
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeE-EEEEecccccCCCCcc-cccC-----CC----CCCCCChHHHH
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVI-CILLHPGTVDTDLSRP-FQRN-----VP----EGKLFTKEFSV 254 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~-v~~i~Pg~v~t~~~~~-~~~~-----~~----~~~~~~~~~~a 254 (282)
+....|+.+|++++.+++. . +++ ++.++||++.++.... +... .+ .....+++++|
T Consensus 120 ----~~~~~y~~sK~~~e~~~~~-------~--~~~~~~~vrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva 186 (215)
T 2a35_A 120 ----KSSIFYNRVKGELEQALQE-------Q--GWPQLTIARPSLLFGPREEFRLAEILAAPIARILPGKYHGIEACDLA 186 (215)
T ss_dssp ----TCSSHHHHHHHHHHHHHTT-------S--CCSEEEEEECCSEESTTSCEEGGGGTTCCCC----CHHHHHHHHHHH
T ss_pred ----CCccHHHHHHHHHHHHHHH-------c--CCCeEEEEeCceeeCCCCcchHHHHHHHhhhhccCCCcCcEeHHHHH
Confidence 2345899999999988764 2 677 9999999998875431 1111 01 01234678999
Q ss_pred HHHHHHHhhc
Q 023441 255 QKLLNIINNI 264 (282)
Q Consensus 255 ~~~~~~~~~~ 264 (282)
+.++.++...
T Consensus 187 ~~~~~~~~~~ 196 (215)
T 2a35_A 187 RALWRLALEE 196 (215)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHhcC
Confidence 9999988754
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-19 Score=153.58 Aligned_cols=210 Identities=13% Similarity=0.041 Sum_probs=151.0
Q ss_pred CcEEEEecCCCchhHHHHHHHHhc--CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEK--NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~--G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++++|||||+|+||.+++++|+++ |++ |++++|+..... .. .++.++.+|++|.+++.+++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~--V~~~~r~~~~~~----~~----~~~~~~~~D~~d~~~~~~~~~~~---- 67 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTEN--VIASDIRKLNTD----VV----NSGPFEVVNALDFNQIEHLVEVH---- 67 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGG--EEEEESCCCSCH----HH----HSSCEEECCTTCHHHHHHHHHHT----
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCE--EEEEcCCCcccc----cc----CCCceEEecCCCHHHHHHHHhhc----
Confidence 578999999999999999999999 887 899999866521 11 25678999999999998887753
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
++|++||+||... .. ..+.....+++|+.++.++++++.+. +. +++|++||......
T Consensus 68 -~~d~vih~a~~~~-------~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~------~~~v~~SS~~~~~~ 124 (312)
T 2yy7_A 68 -KITDIYLMAALLS-------AT-----AEKNPAFAWDLNMNSLFHVLNLAKAK----KI------KKIFWPSSIAVFGP 124 (312)
T ss_dssp -TCCEEEECCCCCH-------HH-----HHHCHHHHHHHHHHHHHHHHHHHHTT----SC------SEEECCEEGGGCCT
T ss_pred -CCCEEEECCccCC-------Cc-----hhhChHHHHHHHHHHHHHHHHHHHHc----CC------CEEEEeccHHHhCC
Confidence 6999999999752 11 12456778999999999999988652 21 28999999765432
Q ss_pred CC---------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc---------------cccC
Q 023441 186 DN---------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP---------------FQRN 241 (282)
Q Consensus 186 ~~---------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~---------------~~~~ 241 (282)
.. +......|+.+|.+.+.+++.++.++ +++++++.|+.+..+.... ....
T Consensus 125 ~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 199 (312)
T 2yy7_A 125 TTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIY-----GVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADK 199 (312)
T ss_dssp TSCSSSBCSSCBCCCCSHHHHHHHHHHHHHHHHHHHH-----CCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTS
T ss_pred CCCCCCccccCcCCCCchhHHHHHHHHHHHHHHHHhc-----CCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCC
Confidence 11 12235689999999999999988776 6889999999887642110 0000
Q ss_pred --------CCCCCCCChHHHHHHHHHHHhhcCCCC-CCceeecCCcc
Q 023441 242 --------VPEGKLFTKEFSVQKLLNIINNIKSHD-NGKFFAWDGQE 279 (282)
Q Consensus 242 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~-~g~~~~~d~~~ 279 (282)
.....+...+++|+.++.++....... .|..|.+.++.
T Consensus 200 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~~~ 246 (312)
T 2yy7_A 200 KYECFLSSETKMPMMYMDDAIDATINIMKAPVEKIKIHSSYNLAAMS 246 (312)
T ss_dssp EEEESSCTTCCEEEEEHHHHHHHHHHHHHSCGGGCCCSSCEECCSEE
T ss_pred CeEEecCCCceeeeeeHHHHHHHHHHHHhCcccccccCceEEeCCCc
Confidence 011233567999999999987644322 23556554443
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=158.99 Aligned_cols=211 Identities=11% Similarity=0.052 Sum_probs=146.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcC-CCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKN-DKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G-~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+++++++|||||+|+||.+++++|+++| ++ |++++|+..... ... +. .+. +.+|++|.+.++++++.
T Consensus 42 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~--V~~~~r~~~~~~-~~~-~~----~~~-~~~d~~~~~~~~~~~~~-- 110 (357)
T 2x6t_A 42 SGIEGRMIIVTGGAGFIGSNIVKALNDKGITD--ILVVDNLKDGTK-FVN-LV----DLN-IADYMDKEDFLIQIMAG-- 110 (357)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTCCC--EEEEECCSSGGG-GGG-TT----TSC-CSEEEEHHHHHHHHHTT--
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCcE--EEEEecCCCcch-hhc-cc----Cce-EeeecCcHHHHHHHHhh--
Confidence 35678999999999999999999999999 77 888888765431 111 11 222 67999999888877753
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
..++++|+||||||... . +.+.++..+++|+.++.++++++.+.- . ++|++||...
T Consensus 111 ~~~~~~d~Vih~A~~~~-------~------~~~~~~~~~~~n~~~~~~ll~a~~~~~----------~-r~V~~SS~~v 166 (357)
T 2x6t_A 111 EEFGDVEAIFHEGACSS-------T------TEWDGKYMMDNNYQYSKELLHYCLERE----------I-PFLYASSAAT 166 (357)
T ss_dssp CCCSSCCEEEECCSCCC-------T------TCCCHHHHHHHTHHHHHHHHHHHHHHT----------C-CEEEEEEGGG
T ss_pred cccCCCCEEEECCcccC-------C------ccCCHHHHHHHHHHHHHHHHHHHHHcC----------C-eEEEEcchHH
Confidence 23568999999999763 1 123567889999999999999987631 1 6888888765
Q ss_pred ccCCC--------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc------cc--------cc
Q 023441 183 SIGDN--------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR------PF--------QR 240 (282)
Q Consensus 183 ~~~~~--------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~------~~--------~~ 240 (282)
.-... +......|+.+|.+.+.+++.++.++ +++++++.|+.+.++... .+ ..
T Consensus 167 ~g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~ 241 (357)
T 2x6t_A 167 YGGRTSDFIESREYEKPLNVFGYSKFLFDEYVRQILPEA-----NSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNN 241 (357)
T ss_dssp GCSCSSCCCSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC-----SSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHT
T ss_pred hCCCCCCCcCCcCCCCCCChhHHHHHHHHHHHHHHHHHc-----CCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHc
Confidence 32211 11225689999999999999887664 688899999999876432 00 00
Q ss_pred CC---------C-CCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 241 NV---------P-EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 241 ~~---------~-~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
.. . ...+..++++|+.++.++.... |..|.+.++
T Consensus 242 ~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~----~~~~~i~~~ 285 (357)
T 2x6t_A 242 GESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV----SGIFNLGTG 285 (357)
T ss_dssp TCCCEEETTGGGCEECEEEHHHHHHHHHHHHHHCC----CEEEEESCS
T ss_pred CCCcEEeCCCCcceEccEEHHHHHHHHHHHHhcCC----CCeEEecCC
Confidence 10 1 1234678999999999998643 566666543
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.9e-20 Score=165.27 Aligned_cols=208 Identities=13% Similarity=0.056 Sum_probs=147.7
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc---ccccccc---------cCCCceeEEEeeCCChh
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT---GLLDLKN---------RFPERLDVLQLDLTVES 92 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~---~~~~~~~---------~~~~~v~~~~~Dls~~~ 92 (282)
+..++++|||||+|+||++++++|+++|++ |++++|+....+ .+.+.+. ..+.++.++.+|++|.+
T Consensus 66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~--V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 143 (427)
T 4f6c_A 66 HRPLGNTLLTGATGFLGAYLIEALQGYSHR--IYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMD 143 (427)
T ss_dssp CCCCEEEEEECTTSHHHHHHHHHHTTTEEE--EEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---C
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHHcCCCE--EEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcc
Confidence 345789999999999999999999999987 999999987322 2222111 12358999999999988
Q ss_pred HHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCcccee
Q 023441 93 TIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVA 172 (282)
Q Consensus 93 ~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~ 172 (282)
++. .++++|+||||||... . .+.+...+++|+.++.++++++.+ .. .
T Consensus 144 ~l~--------~~~~~d~Vih~A~~~~-------~-------~~~~~~~~~~Nv~g~~~l~~aa~~----~~-------~ 190 (427)
T 4f6c_A 144 DVV--------LPENMDTIIHAGARTD-------H-------FGDDDEFEKVNVQGTVDVIRLAQQ----HH-------A 190 (427)
T ss_dssp CCC--------CSSCCSEEEECCCCC---------------------CHHHHHHHHHHHHHHHHHH----TT-------C
T ss_pred cCC--------CcCCCCEEEECCcccC-------C-------CCCHHHHHHHHHHHHHHHHHHHHh----cC-------C
Confidence 777 4578999999999763 1 245677899999999999999877 11 2
Q ss_pred EEEEeeccccccCCC-----------------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCC
Q 023441 173 VVANLSARVGSIGDN-----------------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS 235 (282)
Q Consensus 173 ~iv~~ss~~~~~~~~-----------------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~ 235 (282)
++|++||... +.. +......|+.+|.+.+.+++.++. . +++++++.||.+.++..
T Consensus 191 ~~v~~SS~~~--G~~~~~~~~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~--g~~~~ivRpg~v~G~~~ 262 (427)
T 4f6c_A 191 RLIYVSTISV--GTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN----N--GLDGRIVRVGNLTSPYN 262 (427)
T ss_dssp EEEEEEEGGG--GSEECSSCSCCEECTTCSCSSCCCCSHHHHHHHHHHHHHHHHHH----T--TCCEEEEEECCEESCSS
T ss_pred cEEEECchHh--CCCccCCCCCccccccccccCCCCCCchHHHHHHHHHHHHHHHH----c--CCCEEEEeCCeeecCCC
Confidence 8999999876 110 022567899999999999998764 3 78999999999987754
Q ss_pred cccc-----------------cC--------CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 236 RPFQ-----------------RN--------VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 236 ~~~~-----------------~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
.... .. .....+.+.+++|++++.++.... .|..|.+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~DvA~ai~~~~~~~~---~g~~~~l~~~ 327 (427)
T 4f6c_A 263 GRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNT---PQIIYHVLSP 327 (427)
T ss_dssp SCCCCTTGGGCHHHHHHHHHHHSSEEEHHHHTCEECCEEHHHHHHHHHHHTTSCC---CCSEEEESCS
T ss_pred CCccccCcchHHHHHHHHHHHhcCCCCCccccceEEEeeHHHHHHHHHHHHcCCC---CCCEEEecCC
Confidence 3210 00 111235678999999999887543 6677766543
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-20 Score=161.21 Aligned_cols=210 Identities=15% Similarity=0.085 Sum_probs=142.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccc--cccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL--DLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~--~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++|++|||||+|+||++++++|+++|++ |++..|+.+...... ..+. ...++.++.+|++|.+++.++++
T Consensus 8 ~~~~vlVTGatGfIG~~l~~~Ll~~G~~--V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~----- 79 (338)
T 2rh8_A 8 GKKTACVVGGTGFVASLLVKLLLQKGYA--VNTTVRDPDNQKKVSHLLELQ-ELGDLKIFRADLTDELSFEAPIA----- 79 (338)
T ss_dssp -CCEEEEECTTSHHHHHHHHHHHHTTCE--EEEEESCTTCTTTTHHHHHHG-GGSCEEEEECCTTTSSSSHHHHT-----
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCE--EEEEEcCcchhhhHHHHHhcC-CCCcEEEEecCCCChHHHHHHHc-----
Confidence 3789999999999999999999999987 888888876543221 1111 12468899999999998887765
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++|+|||+|+... .. ..+..++.+++|+.++.++++++.+.. +. +++|++||..+..
T Consensus 80 --~~D~Vih~A~~~~-------~~-----~~~~~~~~~~~nv~gt~~ll~aa~~~~---~v------~r~V~~SS~~~~~ 136 (338)
T 2rh8_A 80 --GCDFVFHVATPVH-------FA-----SEDPENDMIKPAIQGVVNVMKACTRAK---SV------KRVILTSSAAAVT 136 (338)
T ss_dssp --TCSEEEEESSCCC-------C--------------CHHHHHHHHHHHHHHHHCT---TC------CEEEEECCHHHHH
T ss_pred --CCCEEEEeCCccC-------CC-----CCCcHHHHHHHHHHHHHHHHHHHHHcC---Cc------CEEEEEecHHHee
Confidence 5899999998642 11 011123578999999999999987643 11 2899999976321
Q ss_pred C----------CCCC--------C---CcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---
Q 023441 185 G----------DNRL--------G---GWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--- 240 (282)
Q Consensus 185 ~----------~~~~--------~---~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--- 240 (282)
+ ++.. + ....|+.||++.+.+++.++.+. ++++++++|+.+.++.......
T Consensus 137 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~~lrp~~v~Gp~~~~~~~~~~ 211 (338)
T 2rh8_A 137 INQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEEN-----NIDLITVIPTLMAGSSLTSDVPSSI 211 (338)
T ss_dssp HHHHTCSCCCCCTTTTTCC-------CCCCCCTTSCCHHHHHHHHHHHHH-----TCCEEEEEECEEESCCSSSSCCHHH
T ss_pred cCCcCCCCcccChhhccchhhccccCCccchHHHHHHHHHHHHHHHHHHc-----CCcEEEEeCCceECCCCCCCCCchH
Confidence 1 0000 0 11259999999999888877654 6889999999999886432110
Q ss_pred --------CCC--------------CCCCCChHHHHHHHHHHHhhcCCCCCCceee
Q 023441 241 --------NVP--------------EGKLFTKEFSVQKLLNIINNIKSHDNGKFFA 274 (282)
Q Consensus 241 --------~~~--------------~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~ 274 (282)
..+ ...+..++++|++++.+++.. ..+|.++.
T Consensus 212 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~--~~~~~~~~ 265 (338)
T 2rh8_A 212 GLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKE--SASGRYIC 265 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHCT--TCCEEEEE
T ss_pred HHHHHHHcCCccccccccccccccCcccEEEHHHHHHHHHHHHcCC--CcCCcEEE
Confidence 000 003678999999999988642 23455443
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-18 Score=150.69 Aligned_cols=209 Identities=13% Similarity=0.099 Sum_probs=149.6
Q ss_pred cEEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCCh-hHHHHHHHHHHHHcC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE-STIEASAKSIKEKYG 106 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~-~~~~~~~~~~~~~~~ 106 (282)
+++|||||+|+||.+++++|+++ |++ |++++|+..+.+.... ..++.++.+|++|. +.++++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~--V~~~~r~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~------- 66 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYE--VYGLDIGSDAISRFLN-----HPHFHFVEGDISIHSEWIEYHVK------- 66 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCE--EEEEESCCGGGGGGTT-----CTTEEEEECCTTTCSHHHHHHHH-------
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCE--EEEEeCCcchHHHhhc-----CCCeEEEeccccCcHHHHHhhcc-------
Confidence 47999999999999999999998 776 9999998765433211 24789999999984 45666654
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++|||||... .. ...+++...+++|+.++.++++++... + + ++|++||....-..
T Consensus 67 ~~d~vih~A~~~~-------~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~------~~v~~SS~~v~g~~ 124 (345)
T 2bll_A 67 KCDVVLPLVAIAT-------PI----EYTRNPLRVFELDFEENLRIIRYCVKY----R-K------RIIFPSTSEVYGMC 124 (345)
T ss_dssp HCSEEEECBCCCC-------HH----HHHHSHHHHHHHHTHHHHHHHHHHHHT----T-C------EEEEECCGGGGBTC
T ss_pred CCCEEEEcccccC-------cc----chhcCHHHHHHHHHHHHHHHHHHHHHh----C-C------eEEEEecHHHcCCC
Confidence 4899999999753 11 112356678999999999999988652 1 2 89999996543211
Q ss_pred C--CC-------------CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------
Q 023441 187 N--RL-------------GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF------------- 238 (282)
Q Consensus 187 ~--~~-------------~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~------------- 238 (282)
. +. .....|+.+|.+.+.+++.++.+. +++++++.|+.+..+.....
T Consensus 125 ~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~ 199 (345)
T 2bll_A 125 SDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE-----GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQ 199 (345)
T ss_dssp CCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECSEECSSCCCTTCSBSCBCHHHHH
T ss_pred CCCCcCCcccccccCcccCcccccHHHHHHHHHHHHHHHHhc-----CCCEEEEcCCcccCCCcccccccccccccHHHH
Confidence 0 00 122379999999999999998775 68888899999976653210
Q ss_pred -----ccCC---------CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 239 -----QRNV---------PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 239 -----~~~~---------~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
.... ....+...+++|++++.++........|..|.+.++
T Consensus 200 ~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~g~~~~i~~~ 253 (345)
T 2bll_A 200 LILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNP 253 (345)
T ss_dssp HHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCT
T ss_pred HHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHHHhhccccCCCceEEeCCC
Confidence 0011 112356889999999999976543356777777654
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-19 Score=153.79 Aligned_cols=203 Identities=13% Similarity=0.101 Sum_probs=118.6
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
+|++|||||+|+||++++++|+++|++ |++++|+... .+ ++.+|++|.+++.++++.. +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~------------~~--~~~~Dl~d~~~~~~~~~~~-----~ 60 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWH--AVGCGFRRAR------------PK--FEQVNLLDSNAVHHIIHDF-----Q 60 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCE--EEEEC--------------------------------CHHHHHHH-----C
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCe--EEEEccCCCC------------CC--eEEecCCCHHHHHHHHHhh-----C
Confidence 689999999999999999999999977 8988886543 12 7889999999998888764 6
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC--
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG-- 185 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~-- 185 (282)
+|++|||||... . ..+.+.+++.+++|+.++.++++++.+. + .++|++||.....+
T Consensus 61 ~d~vih~A~~~~-------~----~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~-------~~~v~~SS~~v~~~~~ 118 (315)
T 2ydy_A 61 PHVIVHCAAERR-------P----DVVENQPDAASQLNVDASGNLAKEAAAV----G-------AFLIYISSDYVFDGTN 118 (315)
T ss_dssp CSEEEECC------------------------------CHHHHHHHHHHHHH----T-------CEEEEEEEGGGSCSSS
T ss_pred CCEEEECCcccC-------h----hhhhcCHHHHHHHHHHHHHHHHHHHHHc----C-------CeEEEEchHHHcCCCC
Confidence 999999999753 1 1134567788999999999999998763 1 28999999875432
Q ss_pred -----CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccC---CCCccc----c-cC-------CCCC
Q 023441 186 -----DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDT---DLSRPF----Q-RN-------VPEG 245 (282)
Q Consensus 186 -----~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t---~~~~~~----~-~~-------~~~~ 245 (282)
..+......|+.+|++++.+++.++.++ ..+|...|. |+..+ .+...+ . .. ....
T Consensus 119 ~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~lR~~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (315)
T 2ydy_A 119 PPYREEDIPAPLNLYGKTKLDGEKAVLENNLGA----AVLRIPILY-GEVEKLEESAVTVMFDKVQFSNKSANMDHWQQR 193 (315)
T ss_dssp CSBCTTSCCCCCSHHHHHHHHHHHHHHHHCTTC----EEEEECSEE-CSCSSGGGSTTGGGHHHHHCCSSCEEEECSSBB
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCCe----EEEeeeeee-CCCCcccccHHHHHHHHHHhcCCCeeeccCceE
Confidence 0112345689999999999998875332 145555555 44444 222111 1 11 1123
Q ss_pred CCCChHHHHHHHHHHHhhc-CCCCCCceeecCCc
Q 023441 246 KLFTKEFSVQKLLNIINNI-KSHDNGKFFAWDGQ 278 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~-~~~~~g~~~~~d~~ 278 (282)
....++++|+.++.++... .....|..+.+.++
T Consensus 194 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~i~~~ 227 (315)
T 2ydy_A 194 FPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGN 227 (315)
T ss_dssp CCEEHHHHHHHHHHHHHHHHTCTTCCEEEECCCS
T ss_pred CcEEHHHHHHHHHHHHHhhccccCCCCeEEEcCC
Confidence 4568899999999988753 22345666766554
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=154.13 Aligned_cols=213 Identities=15% Similarity=0.146 Sum_probs=153.7
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCC-ChhHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT-VESTIEASAKS 100 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls-~~~~~~~~~~~ 100 (282)
..+++++++|||||+|.||.+++++|+++ |++ |++++|+......... ..++.++.+|++ |.+.+.++++
T Consensus 19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~--V~~~~r~~~~~~~~~~-----~~~v~~~~~Dl~~d~~~~~~~~~- 90 (372)
T 3slg_A 19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDWE--VFGMDMQTDRLGDLVK-----HERMHFFEGDITINKEWVEYHVK- 90 (372)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHHSSCE--EEEEESCCTTTGGGGG-----STTEEEEECCTTTCHHHHHHHHH-
T ss_pred CcccCCCEEEEECCCChHHHHHHHHHHhCCCCE--EEEEeCChhhhhhhcc-----CCCeEEEeCccCCCHHHHHHHhc-
Confidence 34567899999999999999999999999 877 9999998866544322 247999999999 9998888876
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
++|+|||+|+... .. ...++....+++|+.++.++++++...- . ++|++||.
T Consensus 91 ------~~d~Vih~A~~~~-------~~----~~~~~~~~~~~~nv~~~~~ll~a~~~~~-----~------~~v~~SS~ 142 (372)
T 3slg_A 91 ------KCDVILPLVAIAT-------PA----TYVKQPLRVFELDFEANLPIVRSAVKYG-----K------HLVFPSTS 142 (372)
T ss_dssp ------HCSEEEECBCCCC-------HH----HHHHCHHHHHHHHTTTTHHHHHHHHHHT-----C------EEEEECCG
T ss_pred ------cCCEEEEcCcccc-------HH----HHhhCHHHHHHHHHHHHHHHHHHHHHhC-----C------cEEEeCcH
Confidence 4899999999863 11 1123455788999999999999886542 1 89999996
Q ss_pred ccccCC--CCC-------------CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--------
Q 023441 181 VGSIGD--NRL-------------GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-------- 237 (282)
Q Consensus 181 ~~~~~~--~~~-------------~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~-------- 237 (282)
...-.. .+. .....|+.+|.+.+.+++.++.+ +++++++.|+.+..+....
T Consensus 143 ~vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~------g~~~~ilRp~~v~G~~~~~~~~~~~~~ 216 (372)
T 3slg_A 143 EVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGME------GLNFTLFRPFNWIGPGLDSIYTPKEGS 216 (372)
T ss_dssp GGGBSCCCSSBCTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHTT------TCEEEEEEECSEECSSCCCTTCSBSCS
T ss_pred HHhCCCCCCCCCccccccccCCCCCCCCcHHHHHHHHHHHHHHHHHC------CCCEEEEccccccCCCccccccccccc
Confidence 432210 000 22337999999999999887765 5888889999987664321
Q ss_pred ----------cccC---------CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 238 ----------FQRN---------VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 238 ----------~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
.... .....+...+++|++++.++........|..|.+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~ 275 (372)
T 3slg_A 217 SRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGN 275 (372)
T ss_dssp CHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECC
T ss_pred chHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHHHHHHhcccCcCCCceEEeCC
Confidence 0001 111245678999999999998654445677777765
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=142.13 Aligned_cols=195 Identities=15% Similarity=0.144 Sum_probs=129.6
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++|||||+|+||++++++|+++|++ |++++|+.++.+... .++.++.+|++|.++ +.+.++|
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~--V~~~~R~~~~~~~~~-------~~~~~~~~D~~d~~~---------~~~~~~d 63 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHE--VTAIVRNAGKITQTH-------KDINILQKDIFDLTL---------SDLSDQN 63 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCSHHHHHHC-------SSSEEEECCGGGCCH---------HHHTTCS
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCE--EEEEEcCchhhhhcc-------CCCeEEeccccChhh---------hhhcCCC
Confidence 6999999999999999999999987 999999876644321 468999999999887 2235799
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC--
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN-- 187 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~-- 187 (282)
++|||+|... . ...+|+.++.++++++. +.+. +++|++||..+..+..
T Consensus 64 ~vi~~ag~~~-------~-------------~~~~~~~~~~~l~~a~~----~~~~------~~~v~~SS~~~~~~~~~~ 113 (221)
T 3ew7_A 64 VVVDAYGISP-------D-------------EAEKHVTSLDHLISVLN----GTVS------PRLLVVGGAASLQIDEDG 113 (221)
T ss_dssp EEEECCCSST-------T-------------TTTSHHHHHHHHHHHHC----SCCS------SEEEEECCCC--------
T ss_pred EEEECCcCCc-------c-------------ccchHHHHHHHHHHHHH----hcCC------ceEEEEecceEEEcCCCC
Confidence 9999999852 1 13456666666666553 3333 3899999987654421
Q ss_pred -------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCC--ccccc-------CCCCCCCCChH
Q 023441 188 -------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS--RPFQR-------NVPEGKLFTKE 251 (282)
Q Consensus 188 -------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~--~~~~~-------~~~~~~~~~~~ 251 (282)
+......|+.+|...+.+. .+.. ... +++++.++||.+.++.. ..+.. ........+++
T Consensus 114 ~~~~~~~~~~~~~~y~~~k~~~e~~~-~~~~--~~~--gi~~~ivrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 188 (221)
T 3ew7_A 114 NTLLESKGLREAPYYPTARAQAKQLE-HLKS--HQA--EFSWTYISPSAMFEPGERTGDYQIGKDHLLFGSDGNSFISME 188 (221)
T ss_dssp -----------CCCSCCHHHHHHHHH-HHHT--TTT--TSCEEEEECSSCCCCC---------------------CCCHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHH-HHHh--hcc--CccEEEEeCcceecCCCccCceEeccccceecCCCCceEeHH
Confidence 1123456999999998862 2322 123 78999999999987621 11110 01113467899
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++|+.++.++... ...|+.|.+-+-+
T Consensus 189 Dva~~~~~~l~~~--~~~g~~~~~~~~~ 214 (221)
T 3ew7_A 189 DYAIAVLDEIERP--NHLNEHFTVAGKL 214 (221)
T ss_dssp HHHHHHHHHHHSC--SCTTSEEECCC--
T ss_pred HHHHHHHHHHhCc--cccCCEEEECCCC
Confidence 9999999999864 3567777765543
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-18 Score=148.87 Aligned_cols=169 Identities=18% Similarity=0.113 Sum_probs=121.4
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc-CCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR-FPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~-~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++|||||+|+||++++++|+++|++ |++++|.........+.+.. .+.++.++.+|++|.+++.++++.. ++
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G~~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----~~ 74 (338)
T 1udb_A 2 RVLVTGGSGYIGSHTCVQLLQNGHD--VIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDH-----AI 74 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHT-----TC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCE--EEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhcc-----CC
Confidence 6999999999999999999999987 88887754432221111111 1346889999999999988887652 69
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC--
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD-- 186 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~-- 186 (282)
|+||||||... ... ..+.....+++|+.++.++++++... +. +++|++||....-..
T Consensus 75 D~vih~A~~~~-------~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~------~~iv~~SS~~~~g~~~~ 133 (338)
T 1udb_A 75 DTVIHFAGLKA-------VGE----SVQKPLEYYDNNVNGTLRLISAMRAA----NV------KNFIFSSSATVYGDNPK 133 (338)
T ss_dssp SEEEECCSCCC-------HHH----HHHCHHHHHHHHHHHHHHHHHHHHHH----TC------CEEEEEEEGGGGCSCCS
T ss_pred CEEEECCccCc-------ccc----chhcHHHHHHHHHHHHHHHHHHHHhc----CC------CeEEEEccHHHhCCCCC
Confidence 99999999753 111 12345678999999999999876432 22 289999997543210
Q ss_pred ------CCC-CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccc
Q 023441 187 ------NRL-GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTV 230 (282)
Q Consensus 187 ------~~~-~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v 230 (282)
.+. +....|+.+|++++.+++.++.+.. ++++..+.|+.+
T Consensus 134 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~----~~~~~ilR~~~v 180 (338)
T 1udb_A 134 IPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQP----DWSIALLRYFNP 180 (338)
T ss_dssp SSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHST----TCEEEEEEECEE
T ss_pred CCcCcccCCCCCCChHHHHHHHHHHHHHHHHHhcC----CCceEEEeecee
Confidence 111 2356899999999999999988742 577777777554
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-18 Score=141.10 Aligned_cols=192 Identities=10% Similarity=0.027 Sum_probs=132.8
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++|||||+|+||++++++|+++|++ |++++|+.++.... .+.++.++.+|++|.++ +.++++|
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~--V~~~~R~~~~~~~~------~~~~~~~~~~D~~d~~~---------~~~~~~d 64 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHE--VLAVVRDPQKAADR------LGATVATLVKEPLVLTE---------ADLDSVD 64 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHH------TCTTSEEEECCGGGCCH---------HHHTTCS
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCE--EEEEEecccccccc------cCCCceEEecccccccH---------hhcccCC
Confidence 5999999999999999999999987 99999987664422 12478999999999987 2235799
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC-
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR- 188 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~- 188 (282)
+||||+|... .. ....+|+.++.++++++. +.+ + ++|++||..+......
T Consensus 65 ~vi~~ag~~~-------~~-----------~~~~~n~~~~~~l~~a~~----~~~-~------~~v~~SS~~~~~~~~~~ 115 (224)
T 3h2s_A 65 AVVDALSVPW-------GS-----------GRGYLHLDFATHLVSLLR----NSD-T------LAVFILGSASLAMPGAD 115 (224)
T ss_dssp EEEECCCCCT-------TS-----------SCTHHHHHHHHHHHHTCT----TCC-C------EEEEECCGGGSBCTTCS
T ss_pred EEEECCccCC-------Cc-----------chhhHHHHHHHHHHHHHH----HcC-C------cEEEEecceeeccCCCC
Confidence 9999999852 00 013467777766666553 333 3 8999998765543211
Q ss_pred --------C--CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-cc-------cCCCCCCCCCh
Q 023441 189 --------L--GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-FQ-------RNVPEGKLFTK 250 (282)
Q Consensus 189 --------~--~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~-~~-------~~~~~~~~~~~ 250 (282)
. .....|+.+|++.+.+ +.+. ... +++++.++||++.++.... +. .........++
T Consensus 116 ~~~~~~~~~~~~~~~~y~~sK~~~e~~-~~~~---~~~--~i~~~ivrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 189 (224)
T 3h2s_A 116 HPMILDFPESAASQPWYDGALYQYYEY-QFLQ---MNA--NVNWIGISPSEAFPSGPATSYVAGKDTLLVGEDGQSHITT 189 (224)
T ss_dssp SCGGGGCCGGGGGSTTHHHHHHHHHHH-HHHT---TCT--TSCEEEEEECSBCCCCCCCCEEEESSBCCCCTTSCCBCCH
T ss_pred ccccccCCCCCccchhhHHHHHHHHHH-HHHH---hcC--CCcEEEEcCccccCCCcccCceecccccccCCCCCceEeH
Confidence 0 0156799999988854 2222 233 7899999999998762211 10 01112346789
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeec
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~ 275 (282)
+++|+.++.++... ...|+.|.+
T Consensus 190 ~DvA~~~~~~l~~~--~~~g~~~~~ 212 (224)
T 3h2s_A 190 GNMALAILDQLEHP--TAIRDRIVV 212 (224)
T ss_dssp HHHHHHHHHHHHSC--CCTTSEEEE
T ss_pred HHHHHHHHHHhcCc--cccCCEEEE
Confidence 99999999999864 345666654
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.9e-18 Score=149.04 Aligned_cols=197 Identities=12% Similarity=0.068 Sum_probs=138.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+++++++|||||+|+||.+++++|+++|++ |++++|+...... ...... ..++.++.+|+++..
T Consensus 23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~---------- 88 (343)
T 2b69_A 23 MEKDRKRILITGGAGFVGSHLTDKLMMDGHE--VTVVDNFFTGRKRNVEHWIG--HENFELINHDVVEPL---------- 88 (343)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCSSCCGGGTGGGTT--CTTEEEEECCTTSCC----------
T ss_pred cccCCCEEEEEcCccHHHHHHHHHHHHCCCE--EEEEeCCCccchhhhhhhcc--CCceEEEeCccCChh----------
Confidence 4467899999999999999999999999987 9999997654322 222211 347899999999853
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+.++|+||||||... ... ..++....+++|+.++.++++++... + .++|++||...
T Consensus 89 --~~~~d~vih~A~~~~-------~~~----~~~~~~~~~~~n~~~~~~l~~a~~~~----~-------~~~v~~SS~~v 144 (343)
T 2b69_A 89 --YIEVDQIYHLASPAS-------PPN----YMYNPIKTLKTNTIGTLNMLGLAKRV----G-------ARLLLASTSEV 144 (343)
T ss_dssp --CCCCSEEEECCSCCS-------HHH----HTTCHHHHHHHHHHHHHHHHHHHHHH----T-------CEEEEEEEGGG
T ss_pred --hcCCCEEEECccccC-------chh----hhhCHHHHHHHHHHHHHHHHHHHHHh----C-------CcEEEECcHHH
Confidence 457999999999753 111 12345677899999999999988653 1 27888888654
Q ss_pred ccCC-------------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc------------
Q 023441 183 SIGD-------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------------ 237 (282)
Q Consensus 183 ~~~~-------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~------------ 237 (282)
.-.. .+......|+.+|++.+.+++.++.+. +++++++.|+.+..+....
T Consensus 145 ~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~ 219 (343)
T 2b69_A 145 YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQE-----GVEVRVARIFNTFGPRMHMNDGRVVSNFILQ 219 (343)
T ss_dssp GBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECCEECTTCCTTCCCHHHHHHHH
T ss_pred hCCCCCCCCcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh-----CCcEEEEEEcceeCcCCCCCcccHHHHHHHH
Confidence 3210 122344679999999999999988775 6888888999987764311
Q ss_pred cccCC---------CCCCCCChHHHHHHHHHHHhh
Q 023441 238 FQRNV---------PEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 238 ~~~~~---------~~~~~~~~~~~a~~~~~~~~~ 263 (282)
..... ....+...+++|+.++.++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~ 254 (343)
T 2b69_A 220 ALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNS 254 (343)
T ss_dssp HHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTS
T ss_pred HHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHhc
Confidence 00000 112345789999999988864
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-18 Score=147.07 Aligned_cols=198 Identities=9% Similarity=0.009 Sum_probs=144.3
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
++++|||||+|.||.+++++|+++|.+ |++++|+....+ + .++.++.+|++ .+++.++++ +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~-----~----~~~~~~~~Dl~-~~~~~~~~~-------~ 62 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNT--PIILTRSIGNKA-----I----NDYEYRVSDYT-LEDLINQLN-------D 62 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCCC--------------CCEEEECCCC-HHHHHHHTT-------T
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCE--EEEEeCCCCccc-----C----CceEEEEcccc-HHHHHHhhc-------C
Confidence 479999999999999999999999987 999999833221 1 16889999999 888877665 7
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC-
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD- 186 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~- 186 (282)
+|++||+|+... .. .....+++|+.++.++++++... +. +++|++||....-..
T Consensus 63 ~d~Vih~a~~~~-------~~--------~~~~~~~~n~~~~~~ll~a~~~~----~~------~r~v~~SS~~vyg~~~ 117 (311)
T 3m2p_A 63 VDAVVHLAATRG-------SQ--------GKISEFHDNEILTQNLYDACYEN----NI------SNIVYASTISAYSDET 117 (311)
T ss_dssp CSEEEECCCCCC-------SS--------SCGGGTHHHHHHHHHHHHHHHHT----TC------CEEEEEEEGGGCCCGG
T ss_pred CCEEEEccccCC-------CC--------ChHHHHHHHHHHHHHHHHHHHHc----CC------CEEEEEccHHHhCCCC
Confidence 999999999864 11 34467889999999999988643 11 279999996543211
Q ss_pred -------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--c--------c---------c
Q 023441 187 -------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--F--------Q---------R 240 (282)
Q Consensus 187 -------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--~--------~---------~ 240 (282)
.+......|+.+|.+.+.+++.++.+. +++++.+.|+.+..+.... + . .
T Consensus 118 ~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~ 192 (311)
T 3m2p_A 118 SLPWNEKELPLPDLMYGVSKLACEHIGNIYSRKK-----GLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLHAN 192 (311)
T ss_dssp GCSBCTTSCCCCSSHHHHHHHHHHHHHHHHHHHS-----CCEEEEEEECEEECSCC--CCHHHHHHHHHHTCCCEEESSB
T ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc-----CCCEEEEeeCceeCcCCCCCCHHHHHHHHHHcCCCeEEecC
Confidence 122345689999999999999988864 7889999999987764331 0 0 0
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 241 NVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 241 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
......+...+++|++++.++.... .+..+.+.+
T Consensus 193 ~~~~~~~v~v~Dva~a~~~~~~~~~---~~~~~~i~~ 226 (311)
T 3m2p_A 193 SVAKREFLYAKDAAKSVIYALKQEK---VSGTFNIGS 226 (311)
T ss_dssp CCCCEEEEEHHHHHHHHHHHTTCTT---CCEEEEECC
T ss_pred CCeEEceEEHHHHHHHHHHHHhcCC---CCCeEEeCC
Confidence 1111244678999999999887543 566666543
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.5e-18 Score=147.43 Aligned_cols=205 Identities=18% Similarity=0.144 Sum_probs=144.3
Q ss_pred EEEEecCCCchhHHHHHHHHhc--CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 30 VSLVQGASRGIGLEFAKQLLEK--NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~--G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
++|||||+|+||.+++++|+++ |++ |++.+|+..... ++.++.+|++|.+++.++++. .+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~--V~~~~r~~~~~~-----------~~~~~~~D~~d~~~~~~~~~~-----~~ 62 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKN--VIASDIVQRDTG-----------GIKFITLDVSNRDEIDRAVEK-----YS 62 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGG--EEEEESSCCCCT-----------TCCEEECCTTCHHHHHHHHHH-----TT
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCE--EEEecCCCcccc-----------CceEEEecCCCHHHHHHHHhh-----cC
Confidence 4899999999999999999999 777 888888765421 467889999999999888775 26
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++||+||... . ...+.++..+++|+.++.++++++.+. +. +++|++||........
T Consensus 63 ~d~vih~a~~~~-------~-----~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~------~~~v~~SS~~~~~~~~ 120 (317)
T 3ajr_A 63 IDAIFHLAGILS-------A-----KGEKDPALAYKVNMNGTYNILEAAKQH----RV------EKVVIPSTIGVFGPET 120 (317)
T ss_dssp CCEEEECCCCCH-------H-----HHHHCHHHHHHHHHHHHHHHHHHHHHT----TC------CEEEEEEEGGGCCTTS
T ss_pred CcEEEECCcccC-------C-----ccccChHHHhhhhhHHHHHHHHHHHHc----CC------CEEEEecCHHHhCCCC
Confidence 999999999752 1 123456778999999999999988653 21 2899999976543211
Q ss_pred ---------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc---------------ccccC--
Q 023441 188 ---------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR---------------PFQRN-- 241 (282)
Q Consensus 188 ---------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~---------------~~~~~-- 241 (282)
+......|+.+|.+.+.+++.++.+. +++++++.|+.+..+... .....
T Consensus 121 ~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (317)
T 3ajr_A 121 PKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKF-----GLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKY 195 (317)
T ss_dssp CSSSBCSSSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCE
T ss_pred CCCCccccccCCCCchHHHHHHHHHHHHHHHHHhc-----CCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCc
Confidence 11245789999999999999888765 688888876544332100 00000
Q ss_pred ------CCCCCCCChHHHHHHHHHHHhhcCC-CCCCceeecCCcc
Q 023441 242 ------VPEGKLFTKEFSVQKLLNIINNIKS-HDNGKFFAWDGQE 279 (282)
Q Consensus 242 ------~~~~~~~~~~~~a~~~~~~~~~~~~-~~~g~~~~~d~~~ 279 (282)
.....+...+++++.++.++..... ...|..|.+.++.
T Consensus 196 ~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~g~~~~i~~~~ 240 (317)
T 3ajr_A 196 KCYLAPNRALPMMYMPDALKALVDLYEADRDKLVLRNGYNVTAYT 240 (317)
T ss_dssp EECSCTTCCEEEEEHHHHHHHHHHHHHCCGGGCSSCSCEECCSEE
T ss_pred eeecCccceeeeeEHHHHHHHHHHHHhCCccccccCceEecCCcc
Confidence 0011234679999999988875432 2245666665543
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-18 Score=157.36 Aligned_cols=217 Identities=13% Similarity=0.102 Sum_probs=149.8
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhc---CCCcEEEEeecCCCcccccc---ccccc------------CCCceeE
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEK---NDKGCVIATCRNPNGATGLL---DLKNR------------FPERLDV 83 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~---G~~~~vi~~~r~~~~~~~~~---~~~~~------------~~~~v~~ 83 (282)
.....++|+||||||+|+||.+++++|+++ |++ |++++|+........ +.+.. ...++.+
T Consensus 67 ~~~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~--V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (478)
T 4dqv_A 67 PGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGR--LICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEV 144 (478)
T ss_dssp CCCCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCE--EEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEE
T ss_pred CCCCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCE--EEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEE
Confidence 335578999999999999999999999999 776 999999877543222 22111 1358999
Q ss_pred EEeeCC------ChhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhh
Q 023441 84 LQLDLT------VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMS 157 (282)
Q Consensus 84 ~~~Dls------~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~ 157 (282)
+.+|++ |.+++.++++ ++|+||||||... . +.+...+.+|+.++.++++++.
T Consensus 145 v~~Dl~~~~~gld~~~~~~~~~-------~~D~Vih~Aa~~~-------~--------~~~~~~~~~Nv~gt~~ll~aa~ 202 (478)
T 4dqv_A 145 VAGDKSEPDLGLDQPMWRRLAE-------TVDLIVDSAAMVN-------A--------FPYHELFGPNVAGTAELIRIAL 202 (478)
T ss_dssp EECCTTSGGGGCCHHHHHHHHH-------HCCEEEECCSSCS-------B--------SSCCEEHHHHHHHHHHHHHHHT
T ss_pred EEeECCCcccCCCHHHHHHHHc-------CCCEEEECccccC-------C--------cCHHHHHHHHHHHHHHHHHHHH
Confidence 999999 4456666554 5899999999864 1 2345678999999999999886
Q ss_pred hhhhcCCCCCccceeEEEEeeccccccCCCC--C-----------------CCcccchhhHHHHHHHHHHHHHHhccCCC
Q 023441 158 PLLKVGGTGIERDVAVVANLSARVGSIGDNR--L-----------------GGWHSYRASKAALNQLTKSVSVEFGRKKD 218 (282)
Q Consensus 158 ~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~--~-----------------~~~~~Y~~sKa~~~~l~~~la~e~~~~~~ 218 (282)
..- . .++|++||.+......+ . .....|+.+|.+.+.+++.++.+.
T Consensus 203 ~~~----~------~~~V~iSS~~v~~~~~~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----- 267 (478)
T 4dqv_A 203 TTK----L------KPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLC----- 267 (478)
T ss_dssp SSS----C------CCEEEEEEGGGGTTSCTTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHH-----
T ss_pred hCC----C------CeEEEEeehhhcCccCCCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHh-----
Confidence 521 1 27899999654321100 0 011349999999999999998865
Q ss_pred CeEEEEEecccccCCCC-----c--c-------------cccC------------CCCCCCCChHHHHHHHHHHHhhcC-
Q 023441 219 PVICILLHPGTVDTDLS-----R--P-------------FQRN------------VPEGKLFTKEFSVQKLLNIINNIK- 265 (282)
Q Consensus 219 ~i~v~~i~Pg~v~t~~~-----~--~-------------~~~~------------~~~~~~~~~~~~a~~~~~~~~~~~- 265 (282)
+++++++.||.+..+-. . . ..+. .....+...+++|++++.++....
T Consensus 268 gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~ 347 (478)
T 4dqv_A 268 ALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAG 347 (478)
T ss_dssp CCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-
T ss_pred CCCeEEEECceeeCCCccCCcCCHHHHHHHHHHHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhccc
Confidence 68899999999965421 1 0 0000 011234678999999999887531
Q ss_pred -CCCCCceeecCC
Q 023441 266 -SHDNGKFFAWDG 277 (282)
Q Consensus 266 -~~~~g~~~~~d~ 277 (282)
....|..|.+.+
T Consensus 348 ~~~~~~~~ynv~~ 360 (478)
T 4dqv_A 348 SSLAGFATYHVMN 360 (478)
T ss_dssp CCCCSEEEEEESC
T ss_pred CCCCCCceEEecC
Confidence 234456666543
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=159.43 Aligned_cols=212 Identities=14% Similarity=0.123 Sum_probs=153.4
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhH-HHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVEST-IEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~-~~~~~~~~~~ 103 (282)
++++++|||||+|+||.+++++|+++ |++ |++++|+......... ..++.++.+|++|.++ +.++++
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~--V~~~~r~~~~~~~~~~-----~~~v~~v~~Dl~d~~~~~~~~~~---- 381 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYE--VYGLDIGSDAISRFLN-----HPHFHFVEGDISIHSEWIEYHVK---- 381 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEE--EEEEESCCTTTGGGTT-----CTTEEEEECCTTTCHHHHHHHHH----
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCE--EEEEEcCchhhhhhcc-----CCceEEEECCCCCcHHHHHHhhc----
Confidence 47899999999999999999999998 776 9999998765433211 3478999999999765 555554
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++|++|||||... .. ...+.....+++|+.++.++++++... + + ++|++||....
T Consensus 382 ---~~D~Vih~Aa~~~-------~~----~~~~~~~~~~~~Nv~gt~~ll~aa~~~----~-~------r~V~~SS~~vy 436 (660)
T 1z7e_A 382 ---KCDVVLPLVAIAT-------PI----EYTRNPLRVFELDFEENLRIIRYCVKY----R-K------RIIFPSTSEVY 436 (660)
T ss_dssp ---HCSEEEECCCCCC-------TH----HHHHSHHHHHHHHTHHHHHHHHHHHHT----T-C------EEEEECCGGGG
T ss_pred ---CCCEEEECceecC-------cc----ccccCHHHHHHhhhHHHHHHHHHHHHh----C-C------EEEEEecHHHc
Confidence 5899999999753 11 112345678999999999999988653 1 2 89999997543
Q ss_pred cCCC--CC-------------CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-----------
Q 023441 184 IGDN--RL-------------GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP----------- 237 (282)
Q Consensus 184 ~~~~--~~-------------~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~----------- 237 (282)
.... +. .....|+.+|.+.+.+++.++.+. +++++++.||.+.++....
T Consensus 437 g~~~~~~~~E~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~ 511 (660)
T 1z7e_A 437 GMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE-----GLQFTLFRPFNWMGPRLDNLNAARIGSSRA 511 (660)
T ss_dssp BTCCSSSBCTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECSEESTTSSCHHHHTTTCSCH
T ss_pred CCCCCcccCCCccccccCcccCCCCCcHHHHHHHHHHHHHHHHHc-----CCCEEEECCCcccCCCccccccccccccch
Confidence 2110 00 122369999999999999998775 6889999999997765321
Q ss_pred -------cccCCC---------CCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 238 -------FQRNVP---------EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 238 -------~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
.....+ ...+.+++++|+.++.++........|..|.+.++
T Consensus 512 ~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~~~g~~~ni~~~ 568 (660)
T 1z7e_A 512 ITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNP 568 (660)
T ss_dssp HHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCG
T ss_pred HHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHHHHHHhCccccCCCeEEEECCC
Confidence 000111 12355789999999999976544457888887765
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=144.01 Aligned_cols=186 Identities=11% Similarity=0.018 Sum_probs=136.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+++++|||||+|+||.+++++|+++|++ |++++|+. .+|++|.+++.++++..
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~--v~~~~r~~--------------------~~D~~d~~~~~~~~~~~----- 54 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDV--ELVLRTRD--------------------ELNLLDSRAVHDFFASE----- 54 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTE--EEECCCTT--------------------TCCTTCHHHHHHHHHHH-----
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCe--EEEEecCc--------------------cCCccCHHHHHHHHHhc-----
Confidence 4679999999999999999999999987 77777752 26999999998888754
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|+|||+||... .. ....+.....+++|+.++.++++++...- . .++|++||....-..
T Consensus 55 ~~d~vih~a~~~~-------~~---~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~------~~~v~~SS~~vyg~~ 114 (321)
T 1e6u_A 55 RIDQVYLAAAKVG-------GI---VANNTYPADFIYQNMMIESNIIHAAHQND----V------NKLLFLGSSCIYPKL 114 (321)
T ss_dssp CCSEEEECCCCCC-------CH---HHHHHCHHHHHHHHHHHHHHHHHHHHHTT----C------CEEEEECCGGGSCTT
T ss_pred CCCEEEEcCeecC-------Cc---chhhhCHHHHHHHHHHHHHHHHHHHHHhC----C------CeEEEEccHHHcCCC
Confidence 6999999999752 11 11234456789999999999999886531 1 289999997654211
Q ss_pred -------------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--------------cc
Q 023441 187 -------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--------------FQ 239 (282)
Q Consensus 187 -------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--------------~~ 239 (282)
...+....|+.+|.+.+.+++.++.+. +++++++.|+.+..+.... ..
T Consensus 115 ~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~ 189 (321)
T 1e6u_A 115 AKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY-----GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFH 189 (321)
T ss_dssp CCSSBCGGGTTSSCCCGGGHHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHH
T ss_pred CCCCcCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHh-----CCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHH
Confidence 111113489999999999999988775 6899999999987764321 00
Q ss_pred -------cC-------CCCCCCCChHHHHHHHHHHHhhc
Q 023441 240 -------RN-------VPEGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 240 -------~~-------~~~~~~~~~~~~a~~~~~~~~~~ 264 (282)
.. .....+...+++|+.++.++...
T Consensus 190 ~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~~~~~~~~~~ 228 (321)
T 1e6u_A 190 EATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 228 (321)
T ss_dssp HHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSC
T ss_pred HhhhcCCCceEEcCCCCEEEEeEEHHHHHHHHHHHHhCc
Confidence 00 01123457899999999988754
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=142.28 Aligned_cols=191 Identities=16% Similarity=0.147 Sum_probs=134.9
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++|||||+|+||++++++|++ |++ |++++|+.... .. +.+|++|.+++.++++.. ++|
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~-g~~--V~~~~r~~~~~-----------~~---~~~Dl~~~~~~~~~~~~~-----~~d 59 (273)
T 2ggs_A 2 RTLITGASGQLGIELSRLLSE-RHE--VIKVYNSSEIQ-----------GG---YKLDLTDFPRLEDFIIKK-----RPD 59 (273)
T ss_dssp CEEEETTTSHHHHHHHHHHTT-TSC--EEEEESSSCCT-----------TC---EECCTTSHHHHHHHHHHH-----CCS
T ss_pred EEEEECCCChhHHHHHHHHhc-CCe--EEEecCCCcCC-----------CC---ceeccCCHHHHHHHHHhc-----CCC
Confidence 699999999999999999994 877 99999987421 11 789999999999988765 699
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC--
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN-- 187 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~-- 187 (282)
++|||||... . +.+.++++..+++|+.++.++++++.+. + .++|++||..+..+..
T Consensus 60 ~vi~~a~~~~-------~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-------~~iv~~SS~~~~~~~~~~ 117 (273)
T 2ggs_A 60 VIINAAAMTD-------V----DKCEIEKEKAYKINAEAVRHIVRAGKVI----D-------SYIVHISTDYVFDGEKGN 117 (273)
T ss_dssp EEEECCCCCC-------H----HHHHHCHHHHHHHHTHHHHHHHHHHHHT----T-------CEEEEEEEGGGSCSSSCS
T ss_pred EEEECCcccC-------h----hhhhhCHHHHHHHhHHHHHHHHHHHHHh----C-------CeEEEEecceeEcCCCCC
Confidence 9999999753 1 1234678889999999999999998642 1 2899999987653321
Q ss_pred -----CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----ccCCC------CCCCCChHH
Q 023441 188 -----RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----QRNVP------EGKLFTKEF 252 (282)
Q Consensus 188 -----~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----~~~~~------~~~~~~~~~ 252 (282)
+......|+.+|++++.+++. +... .+|++.+. | .+++...+ ....+ ......+++
T Consensus 118 ~~e~~~~~~~~~Y~~sK~~~e~~~~~----~~~~--~iR~~~v~-G--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 188 (273)
T 2ggs_A 118 YKEEDIPNPINYYGLSKLLGETFALQ----DDSL--IIRTSGIF-R--NKGFPIYVYKTLKEGKTVFAFKGYYSPISARK 188 (273)
T ss_dssp BCTTSCCCCSSHHHHHHHHHHHHHCC----TTCE--EEEECCCB-S--SSSHHHHHHHHHHTTCCEEEESCEECCCBHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhC----CCeE--EEeccccc-c--ccHHHHHHHHHHHcCCCEEeecCCCCceEHHH
Confidence 112356899999999999887 2111 34444444 3 23321111 01111 235678999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCC
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
+|+.+..++.... +| .+.+.+
T Consensus 189 va~~i~~~~~~~~---~g-~~~i~~ 209 (273)
T 2ggs_A 189 LASAILELLELRK---TG-IIHVAG 209 (273)
T ss_dssp HHHHHHHHHHHTC---CE-EEECCC
T ss_pred HHHHHHHHHhcCc---CC-eEEECC
Confidence 9999999998642 45 566555
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=144.05 Aligned_cols=203 Identities=9% Similarity=-0.011 Sum_probs=141.4
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++++++|||||+|.||++++++|+++|.. .... ...+.++.+|++|.+++.++++..
T Consensus 2 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~--------~~~~-----------~~~~~~~~~D~~d~~~~~~~~~~~-- 60 (319)
T 4b8w_A 2 LYFQSMRILVTGGSGLVGKAIQKVVADGAGL--------PGED-----------WVFVSSKDADLTDTAQTRALFEKV-- 60 (319)
T ss_dssp CCCCCCEEEEETCSSHHHHHHHHHHHTTTCC--------TTCE-----------EEECCTTTCCTTSHHHHHHHHHHS--
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhcCCc--------cccc-----------ccccCceecccCCHHHHHHHHhhc--
Confidence 3567899999999999999999999999961 1100 013445578999999998888752
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++|+|||+|+... .. ..+.+.....+++|+.++.++++++...- - .++|++||....
T Consensus 61 ---~~d~Vih~A~~~~-------~~---~~~~~~~~~~~~~nv~gt~~ll~a~~~~~----~------~~~v~~SS~~vy 117 (319)
T 4b8w_A 61 ---QPTHVIHLAAMVG-------GL---FRNIKYNLDFWRKNVHMNDNVLHSAFEVG----A------RKVVSCLSTCIF 117 (319)
T ss_dssp ---CCSEEEECCCCCC-------CH---HHHTTCHHHHHHHHHHHHHHHHHHHHHTT----C------SEEEEECCGGGS
T ss_pred ---CCCEEEECceecc-------cc---cccccCHHHHHHHHHHHHHHHHHHHHHcC----C------CeEEEEcchhhc
Confidence 6999999999752 11 11234456779999999999999876532 1 289999997543
Q ss_pred cCC-------------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-------------
Q 023441 184 IGD-------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------------- 237 (282)
Q Consensus 184 ~~~-------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~------------- 237 (282)
-.. ++.+....|+.+|.+.+.+++.++.+. +++++++.|+.+..+....
T Consensus 118 g~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~ 192 (319)
T 4b8w_A 118 PDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQY-----GCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIH 192 (319)
T ss_dssp CSSCCSSBCGGGGGBSCCCSSSHHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECEEECTTCCCCTTTSCHHHHHHH
T ss_pred CCCCCCCccccccccCCCCCCcchHHHHHHHHHHHHHHHHHhh-----CCCEEEEeeccccCCCCCCCCccccccHHHHH
Confidence 211 111222259999999999999988876 6889999999987664321
Q ss_pred -----cccCCC---------CCCCCChHHHHHHHHHHHhhcCCCCCCceeecC
Q 023441 238 -----FQRNVP---------EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWD 276 (282)
Q Consensus 238 -----~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d 276 (282)
.....+ ...+...+++|++++.++..... ..+..|.+.
T Consensus 193 ~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~~ni~ 244 (319)
T 4b8w_A 193 KVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNE-VEPIILSVG 244 (319)
T ss_dssp HHHHHHHHTCCEEEESCSCCEECEEEHHHHHHHHHHHHHHCCC-SSCEEECCC
T ss_pred HHHHHhccCCceEEeCCCCeeEEEEeHHHHHHHHHHHHhcccc-CCceEEEec
Confidence 011111 12346789999999999986432 345555543
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=142.76 Aligned_cols=195 Identities=12% Similarity=0.023 Sum_probs=138.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+++++|||| +|.||.+++++|+++|++ |++++|+.+.. ..++.++.+|++|.+++.++++ +
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~--V~~~~r~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~------~ 62 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHE--VTGLRRSAQPM----------PAGVQTLIADVTRPDTLASIVH------L 62 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCC--EEEEECTTSCC----------CTTCCEEECCTTCGGGCTTGGG------G
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCE--EEEEeCCcccc----------ccCCceEEccCCChHHHHHhhc------C
Confidence 457899999 599999999999999998 99999987652 2578999999999998887665 3
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC-
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG- 185 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~- 185 (282)
++|++||+||... ......+++|+.++.++++++.. .+. +++|++||....-.
T Consensus 63 ~~d~vih~a~~~~----------------~~~~~~~~~n~~~~~~ll~a~~~----~~~------~~~v~~SS~~vyg~~ 116 (286)
T 3gpi_A 63 RPEILVYCVAASE----------------YSDEHYRLSYVEGLRNTLSALEG----APL------QHVFFVSSTGVYGQE 116 (286)
T ss_dssp CCSEEEECHHHHH----------------HC-----CCSHHHHHHHHHHTTT----SCC------CEEEEEEEGGGCCCC
T ss_pred CCCEEEEeCCCCC----------------CCHHHHHHHHHHHHHHHHHHHhh----CCC------CEEEEEcccEEEcCC
Confidence 6999999999641 33456788999999999998863 221 38999999754321
Q ss_pred -------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----cc------CCCCCCCC
Q 023441 186 -------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----QR------NVPEGKLF 248 (282)
Q Consensus 186 -------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----~~------~~~~~~~~ 248 (282)
..+......|+.+|.+.+.+ +.. ++++.+.|+.+..+....+ .. ......+.
T Consensus 117 ~~~~~~E~~~~~p~~~Y~~sK~~~E~~-~~~----------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i 185 (286)
T 3gpi_A 117 VEEWLDEDTPPIAKDFSGKRMLEAEAL-LAA----------YSSTILRFSGIYGPGRLRMIRQAQTPEQWPARNAWTNRI 185 (286)
T ss_dssp CSSEECTTSCCCCCSHHHHHHHHHHHH-GGG----------SSEEEEEECEEEBTTBCHHHHHTTCGGGSCSSBCEECEE
T ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHH-Hhc----------CCeEEEecccccCCCchhHHHHHHhcccCCCcCceeEEE
Confidence 11223456899999998877 532 4566779998877654321 11 01112345
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
..+++|+.++.++........|..+.+.+
T Consensus 186 ~v~Dva~~~~~~~~~~~~~~~~~~~~~~~ 214 (286)
T 3gpi_A 186 HRDDGAAFIAYLIQQRSHAVPERLYIVTD 214 (286)
T ss_dssp EHHHHHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred EHHHHHHHHHHHHhhhccCCCCceEEEeC
Confidence 78999999999998743334566666554
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=143.04 Aligned_cols=188 Identities=21% Similarity=0.228 Sum_probs=136.4
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
-+++|||||+|+||++++++|+++|++ |++++|+ .+|++|.+++.++++.. +
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g~~--V~~~~r~---------------------~~Dl~d~~~~~~~~~~~-----~ 63 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKNVE--VIPTDVQ---------------------DLDITNVLAVNKFFNEK-----K 63 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEE--EEEECTT---------------------TCCTTCHHHHHHHHHHH-----C
T ss_pred cceEEEECCCChHHHHHHHHHHhCCCe--EEeccCc---------------------cCCCCCHHHHHHHHHhc-----C
Confidence 479999999999999999999999977 8888885 27999999998888764 6
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++|||||... . +.+.+.++..+++|+.++.++++++.+. + .++|++||.....+..
T Consensus 64 ~d~vih~A~~~~-------~----~~~~~~~~~~~~~nv~~~~~l~~a~~~~----~-------~~iv~~SS~~v~~~~~ 121 (292)
T 1vl0_A 64 PNVVINCAAHTA-------V----DKCEEQYDLAYKINAIGPKNLAAAAYSV----G-------AEIVQISTDYVFDGEA 121 (292)
T ss_dssp CSEEEECCCCCC-------H----HHHHHCHHHHHHHHTHHHHHHHHHHHHH----T-------CEEEEEEEGGGSCSCC
T ss_pred CCEEEECCccCC-------H----HHHhcCHHHHHHHHHHHHHHHHHHHHHc----C-------CeEEEechHHeECCCC
Confidence 999999999753 1 1234567889999999999999998763 1 1799999975442211
Q ss_pred --------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC---CCccc----ccC-------CCCC
Q 023441 188 --------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD---LSRPF----QRN-------VPEG 245 (282)
Q Consensus 188 --------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~---~~~~~----~~~-------~~~~ 245 (282)
+......|+.+|.+.+.+++.++. .+..+.|+.+..+ +...+ ... ....
T Consensus 122 ~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~---------~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (292)
T 1vl0_A 122 KEPITEFDEVNPQSAYGKTKLEGENFVKALNP---------KYYIVRTAWLYGDGNNFVKTMINLGKTHDELKVVHDQVG 192 (292)
T ss_dssp SSCBCTTSCCCCCSHHHHHHHHHHHHHHHHCS---------SEEEEEECSEESSSSCHHHHHHHHHHHCSEEEEESSCEE
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHhhCC---------CeEEEeeeeeeCCCcChHHHHHHHHhcCCcEEeecCeee
Confidence 112356899999999999887643 2445567666543 21110 000 0123
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
.+..++++|+.++.++... .|..+.+.++
T Consensus 193 ~~i~v~Dva~~~~~~~~~~----~~~~~~i~~~ 221 (292)
T 1vl0_A 193 TPTSTVDLARVVLKVIDEK----NYGTFHCTCK 221 (292)
T ss_dssp CCEEHHHHHHHHHHHHHHT----CCEEEECCCB
T ss_pred CCccHHHHHHHHHHHHhcC----CCcEEEecCC
Confidence 4567999999999999863 5667766554
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-17 Score=141.69 Aligned_cols=204 Identities=11% Similarity=0.044 Sum_probs=142.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcC-CCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKN-DKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G-~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++|||||+|+||.+++++|+++| .+ |++++|+..... ... .. .+. +.+|++|.+.++++++... ++++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~--V~~~~r~~~~~~-~~~-~~----~~~-~~~d~~~~~~~~~~~~~~~--~~~~ 69 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITD--ILVVDNLKDGTK-FVN-LV----DLN-IADYMDKEDFLIQIMAGEE--FGDV 69 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCC--EEEEECCSSGGG-GHH-HH----TSC-CSEEEEHHHHHHHHHTTCC--CSSC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcE--EEEEccCCCCch-hhh-cC----cce-eccccccHHHHHHHHhccc--cCCC
Confidence 48999999999999999999999 77 888888765431 111 11 122 6789999888777665210 2369
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC-
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN- 187 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~- 187 (282)
|++|||||... . ..++++..+++|+.++.++++++.+.- . ++|++||....-...
T Consensus 70 d~vi~~a~~~~-------~------~~~~~~~~~~~n~~~~~~l~~a~~~~~----------~-~~v~~SS~~v~g~~~~ 125 (310)
T 1eq2_A 70 EAIFHEGACSS-------T------TEWDGKYMMDNNYQYSKELLHYCLERE----------I-PFLYASSAATYGGRTS 125 (310)
T ss_dssp CEEEECCSCCC-------T------TCCCHHHHHHHTHHHHHHHHHHHHHHT----------C-CEEEEEEGGGGTTCCS
T ss_pred cEEEECccccc-------C------cccCHHHHHHHHHHHHHHHHHHHHHcC----------C-eEEEEeeHHHhCCCCC
Confidence 99999999763 1 123466789999999999999986531 1 688888875432111
Q ss_pred -------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc------cc--------ccC-----
Q 023441 188 -------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR------PF--------QRN----- 241 (282)
Q Consensus 188 -------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~------~~--------~~~----- 241 (282)
+......|+.+|.+.+.+++.++.+. +++++++.||.+..+... .+ ...
T Consensus 126 ~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~-----g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (310)
T 1eq2_A 126 DFIESREYEKPLNVYGYSKFLFDEYVRQILPEA-----NSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKL 200 (310)
T ss_dssp CBCSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC-----SSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC------
T ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc-----CCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEE
Confidence 11234679999999999999887653 688899999999876532 00 000
Q ss_pred ----CC-CCCCCChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 242 ----VP-EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 242 ----~~-~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
.. ...+...+++|+.++.++.... |..+.+.+
T Consensus 201 ~~~g~~~~~~~i~v~Dva~~~~~~~~~~~----~~~~~i~~ 237 (310)
T 1eq2_A 201 FEGSENFKRDFVYVGDVADVNLWFLENGV----SGIFNLGT 237 (310)
T ss_dssp -------CBCEEEHHHHHHHHHHHHHHCC----CEEEEESC
T ss_pred ecCCCcceEccEEHHHHHHHHHHHHhcCC----CCeEEEeC
Confidence 01 1234578999999999997643 55666543
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-17 Score=155.63 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=127.3
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc-cCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN-RFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~-~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.+++++|++|||||+|+||++++++|+++|++ |++++|+........+.+. ..+.++.++.+|++|.+++.++++..
T Consensus 6 ~~~~~~~~ilVTGatG~IG~~l~~~L~~~G~~--V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 83 (699)
T 1z45_A 6 QSESTSKIVLVTGGAGYIGSHTVVELIENGYD--CVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEY 83 (699)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHS
T ss_pred ccccCCCEEEEECCCCHHHHHHHHHHHHCcCE--EEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhC
Confidence 35678999999999999999999999999987 8999987654322111111 11357889999999999998887653
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
++|+||||||... ... ..+...+.+++|+.++.++++++... +. +++|++||..
T Consensus 84 -----~~D~Vih~A~~~~-------~~~----~~~~~~~~~~~Nv~gt~~ll~a~~~~----~~------~~iV~~SS~~ 137 (699)
T 1z45_A 84 -----KIDSVIHFAGLKA-------VGE----STQIPLRYYHNNILGTVVLLELMQQY----NV------SKFVFSSSAT 137 (699)
T ss_dssp -----CCCEEEECCSCCC-------HHH----HHHSHHHHHHHHHHHHHHHHHHHHHH----TC------CEEEEEEEGG
T ss_pred -----CCCEEEECCcccC-------cCc----cccCHHHHHHHHHHHHHHHHHHHHHc----CC------CEEEEECcHH
Confidence 6999999999753 111 11233567899999999998876542 21 2899999976
Q ss_pred cccC------------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccC
Q 023441 182 GSIG------------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDT 232 (282)
Q Consensus 182 ~~~~------------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t 232 (282)
..-. ..+......|+.+|++++.+++.++.+. .. ++++.++.|+.+..
T Consensus 138 vyg~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~--g~~~~ilR~~~vyG 197 (699)
T 1z45_A 138 VYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSD-KK--SWKFAILRYFNPIG 197 (699)
T ss_dssp GGCCGGGSTTCCSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS-TT--SCEEEEEEECEEEC
T ss_pred HhCCCccccccCCccccCCCCCCChHHHHHHHHHHHHHHHHHhc-cC--CCcEEEEEeccccC
Confidence 4311 0112234689999999999999998775 22 68888888876643
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.72 E-value=7e-17 Score=140.40 Aligned_cols=201 Identities=15% Similarity=0.042 Sum_probs=139.7
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc----ccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG----ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~----~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
++++++|||||+|+||.+++++|+++|++ |++++|+... .+.+..... ..++.++.+|++
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~------------ 68 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEE--VTVLDDLRVPPMIPPEGTGKFLE--KPVLELEERDLS------------ 68 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCC--EEEECCCSSCCSSCCTTSSEEEC--SCGGGCCHHHHT------------
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCE--EEEEecCCcccccchhhhhhhcc--CCCeeEEeCccc------------
Confidence 56799999999999999999999999988 9999998762 222222211 246677777776
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
++|++||+||... .. ...+.....+. |+.++.++++++...-. .++|++||..
T Consensus 69 -----~~d~vi~~a~~~~-------~~----~~~~~~~~~~~-n~~~~~~ll~a~~~~~v----------~~~v~~SS~~ 121 (321)
T 3vps_A 69 -----DVRLVYHLASHKS-------VP----RSFKQPLDYLD-NVDSGRHLLALCTSVGV----------PKVVVGSTCE 121 (321)
T ss_dssp -----TEEEEEECCCCCC-------HH----HHTTSTTTTHH-HHHHHHHHHHHHHHHTC----------CEEEEEEEGG
T ss_pred -----cCCEEEECCccCC-------hH----HHHhCHHHHHH-HHHHHHHHHHHHHHcCC----------CeEEEecCHH
Confidence 6999999999763 11 11122334566 99999999998865421 2899999976
Q ss_pred cccC--------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCe-EEEEEecccccCCCCcc------c--------
Q 023441 182 GSIG--------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPV-ICILLHPGTVDTDLSRP------F-------- 238 (282)
Q Consensus 182 ~~~~--------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i-~v~~i~Pg~v~t~~~~~------~-------- 238 (282)
.... ..+......|+.+|.+.+.+++.++.+. ++ +++.+.|+.+..+.... +
T Consensus 122 v~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~ 196 (321)
T 3vps_A 122 VYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRAS-----VAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRN 196 (321)
T ss_dssp GGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHSS-----SSCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHS
T ss_pred HhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc-----CCCceEEEEeccccCcCCCCCChHHHHHHHHHcCC
Confidence 4322 1122345789999999999999988764 67 89999999987764321 0
Q ss_pred -----ccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 239 -----QRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 239 -----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
........+...+++|+.++.++.... .| .|.+.++
T Consensus 197 ~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~---~g-~~~i~~~ 237 (321)
T 3vps_A 197 ELPVEGDGEQRRDFTYITDVVDKLVALANRPL---PS-VVNFGSG 237 (321)
T ss_dssp EEEEETTSCCEECEEEHHHHHHHHHHGGGSCC---CS-EEEESCS
T ss_pred CeEEeCCCCceEceEEHHHHHHHHHHHHhcCC---CC-eEEecCC
Confidence 001112244688999999999887654 36 6666543
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.6e-17 Score=139.14 Aligned_cols=186 Identities=17% Similarity=0.160 Sum_probs=135.5
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++|||||+|+||.+++++|+++|++ |++++|. ++|++|.+++.++++.. ++|
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~g~~--V~~~~r~---------------------~~D~~d~~~~~~~~~~~-----~~d 58 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPEEYD--IYPFDKK---------------------LLDITNISQVQQVVQEI-----RPH 58 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTTTEE--EEEECTT---------------------TSCTTCHHHHHHHHHHH-----CCS
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCE--EEEeccc---------------------ccCCCCHHHHHHHHHhc-----CCC
Confidence 8999999999999999999999977 9998882 27999999999888865 699
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC---
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD--- 186 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~--- 186 (282)
++||+||... . ....+.+...+++|+.++.++++++...- .++|++||.....+.
T Consensus 59 ~vi~~a~~~~-------~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----------~~~v~~SS~~vy~~~~~~ 116 (287)
T 3sc6_A 59 IIIHCAAYTK-------V----DQAEKERDLAYVINAIGARNVAVASQLVG-----------AKLVYISTDYVFQGDRPE 116 (287)
T ss_dssp EEEECCCCCC-------H----HHHTTCHHHHHHHHTHHHHHHHHHHHHHT-----------CEEEEEEEGGGSCCCCSS
T ss_pred EEEECCcccC-------h----HHHhcCHHHHHHHHHHHHHHHHHHHHHcC-----------CeEEEEchhhhcCCCCCC
Confidence 9999999863 1 11234677889999999999999986531 268999997644221
Q ss_pred -----CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cC-------CCCCC
Q 023441 187 -----NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RN-------VPEGK 246 (282)
Q Consensus 187 -----~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~-------~~~~~ 246 (282)
.+......|+.+|.+.+.+++.++. ....+.|+.+..+....+. .. .....
T Consensus 117 ~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~---------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (287)
T 3sc6_A 117 GYDEFHNPAPINIYGASKYAGEQFVKELHN---------KYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVADQIGS 187 (287)
T ss_dssp CBCTTSCCCCCSHHHHHHHHHHHHHHHHCS---------SEEEEEECSEECSSSCCHHHHHHHHHTTCSEEEEECSCEEC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCC---------CcEEEeeeeecCCCCCcHHHHHHHHHHcCCCeEeecCcccC
Confidence 1223456899999999999886543 2456689888665322110 00 11234
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 247 LFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
...++++|+.+..++.... +| .+.+.++
T Consensus 188 ~i~v~Dva~~~~~~~~~~~---~~-~~~i~~~ 215 (287)
T 3sc6_A 188 PTYVADLNVMINKLIHTSL---YG-TYHVSNT 215 (287)
T ss_dssp CEEHHHHHHHHHHHHTSCC---CE-EEECCCB
T ss_pred ceEHHHHHHHHHHHHhCCC---CC-eEEEcCC
Confidence 4568999999999997643 44 5555443
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=136.03 Aligned_cols=187 Identities=14% Similarity=0.108 Sum_probs=136.5
Q ss_pred cEEEEecCCCchhHHHHHHHHhc--CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEK--NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~--G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
|++|||||+|+||++++++|+++ |++ |++++|+..+.+.+. ..++.++.+|++|.+++.++++
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~--V~~~~r~~~~~~~l~------~~~~~~~~~D~~d~~~l~~~~~------- 65 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQ--IIAIVRNVEKASTLA------DQGVEVRHGDYNQPESLQKAFA------- 65 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGG--EEEEESCTTTTHHHH------HTTCEEEECCTTCHHHHHHHTT-------
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCe--EEEEEcCHHHHhHHh------hcCCeEEEeccCCHHHHHHHHh-------
Confidence 57999999999999999999999 887 999999876543221 1367899999999988887765
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|++||+++... . + ++|+.++.++++++... +. +++|++||.....
T Consensus 66 ~~d~vi~~a~~~~-------~--------~------~~n~~~~~~l~~a~~~~----~~------~~~v~~Ss~~~~~-- 112 (287)
T 2jl1_A 66 GVSKLLFISGPHY-------D--------N------TLLIVQHANVVKAARDA----GV------KHIAYTGYAFAEE-- 112 (287)
T ss_dssp TCSEEEECCCCCS-------C--------H------HHHHHHHHHHHHHHHHT----TC------SEEEEEEETTGGG--
T ss_pred cCCEEEEcCCCCc-------C--------c------hHHHHHHHHHHHHHHHc----CC------CEEEEECCCCCCC--
Confidence 5899999999521 1 0 46888888888887542 22 2899999976531
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCC-Cccc-----------ccCCCCCCCCChHHHH
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL-SRPF-----------QRNVPEGKLFTKEFSV 254 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~-~~~~-----------~~~~~~~~~~~~~~~a 254 (282)
....|+.+|.+.+.+.+. . +++++.+.||++.++. ...+ ........+.+++++|
T Consensus 113 ----~~~~y~~~K~~~E~~~~~-------~--~~~~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva 179 (287)
T 2jl1_A 113 ----SIIPLAHVHLATEYAIRT-------T--NIPYTFLRNALYTDFFVNEGLRASTESGAIVTNAGSGIVNSVTRNELA 179 (287)
T ss_dssp ----CCSTHHHHHHHHHHHHHH-------T--TCCEEEEEECCBHHHHSSGGGHHHHHHTEEEESCTTCCBCCBCHHHHH
T ss_pred ----CCCchHHHHHHHHHHHHH-------c--CCCeEEEECCEeccccchhhHHHHhhCCceeccCCCCccCccCHHHHH
Confidence 113799999999988752 3 6888888999886654 1100 0011123567899999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
+.+..++... ...|..+.+.++
T Consensus 180 ~~~~~~~~~~--~~~g~~~~i~~~ 201 (287)
T 2jl1_A 180 LAAATVLTEE--GHENKTYNLVSN 201 (287)
T ss_dssp HHHHHHHTSS--SCTTEEEEECCS
T ss_pred HHHHHHhcCC--CCCCcEEEecCC
Confidence 9999998753 246777777665
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=140.53 Aligned_cols=199 Identities=13% Similarity=0.059 Sum_probs=132.1
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEee-CCChhHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD-LTVESTIEASAKSIKE 103 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~D-ls~~~~~~~~~~~~~~ 103 (282)
++++++++||||||+||++++++|+++|++ |++++|+.+.... ..+ .. ..++.++.+| ++|.+++.++++
T Consensus 2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~--V~~~~R~~~~~~~-~~l-~~-~~~v~~v~~D~l~d~~~l~~~~~---- 72 (352)
T 1xgk_A 2 AQQKKTIAVVGATGRQGASLIRVAAAVGHH--VRAQVHSLKGLIA-EEL-QA-IPNVTLFQGPLLNNVPLMDTLFE---- 72 (352)
T ss_dssp -CCCCCEEEESTTSHHHHHHHHHHHHTTCC--EEEEESCSCSHHH-HHH-HT-STTEEEEESCCTTCHHHHHHHHT----
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhCCCE--EEEEECCCChhhH-HHH-hh-cCCcEEEECCccCCHHHHHHHHh----
Confidence 345789999999999999999999999988 9999998776421 111 11 1368899999 999998887765
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeecccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARVG 182 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~~~ 182 (282)
.+|++|||++... ...|..+ .++++++.. .+ - +++|++||...
T Consensus 73 ---~~d~Vi~~a~~~~----------------------~~~~~~~-~~l~~aa~~----~g~v------~~~V~~SS~~~ 116 (352)
T 1xgk_A 73 ---GAHLAFINTTSQA----------------------GDEIAIG-KDLADAAKR----AGTI------QHYIYSSMPDH 116 (352)
T ss_dssp ---TCSEEEECCCSTT----------------------SCHHHHH-HHHHHHHHH----HSCC------SEEEEEECCCG
T ss_pred ---cCCEEEEcCCCCC----------------------cHHHHHH-HHHHHHHHH----cCCc------cEEEEeCCccc
Confidence 5899999997531 0124444 555555432 22 2 28999999762
Q ss_pred -ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCC-----C----
Q 023441 183 -SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNV-----P---- 243 (282)
Q Consensus 183 -~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~-----~---- 243 (282)
..+ ......|..+|++.+.+++.+ ++++++++||++.+...... .... +
T Consensus 117 ~~~~---~~~~~~y~~sK~~~E~~~~~~---------gi~~~ivrpg~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 184 (352)
T 1xgk_A 117 SLYG---PWPAVPMWAPKFTVENYVRQL---------GLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPD 184 (352)
T ss_dssp GGTS---SCCCCTTTHHHHHHHHHHHTS---------SSCEEEEEECEEGGGCBSSSCSSCBEEECTTSCEEEEESSCTT
T ss_pred cccC---CCCCccHHHHHHHHHHHHHHc---------CCCEEEEecceecCCchhcccccccccccCCCceEEeeccCCC
Confidence 322 223467999999999888642 57788889998755432110 0110 0
Q ss_pred -CCCCCCh-HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 244 -EGKLFTK-EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 244 -~~~~~~~-~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.....++ +++|+.+..++........|..+.+.++.+
T Consensus 185 ~~~~~i~v~~Dva~ai~~~l~~~~~~~~g~~~~l~~~~~ 223 (352)
T 1xgk_A 185 IPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALTFETL 223 (352)
T ss_dssp SCEEEECHHHHHHHHHHHHHHHCHHHHTTCEEEECSEEE
T ss_pred CceeeEecHHHHHHHHHHHHhCCchhhCCeEEEEecCCC
Confidence 1123467 899999999997642223466666555443
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=135.25 Aligned_cols=184 Identities=17% Similarity=0.186 Sum_probs=130.2
Q ss_pred EEEEecCCCchhHHHHHHHHhc--CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 30 VSLVQGASRGIGLEFAKQLLEK--NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~--G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
++|||||+|+||.+++++|+++ |++ |++++|+..+.+.+.. .++.++.+|++|.+++.++++ .
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~--V~~~~r~~~~~~~~~~------~~~~~~~~D~~d~~~~~~~~~-------~ 65 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQ--IVAIVRNPAKAQALAA------QGITVRQADYGDEAALTSALQ-------G 65 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGG--EEEEESCTTTCHHHHH------TTCEEEECCTTCHHHHHHHTT-------T
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCce--EEEEEcChHhhhhhhc------CCCeEEEcCCCCHHHHHHHHh-------C
Confidence 4899999999999999999998 887 9999998765432211 367899999999988877664 5
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|++||++|... . .|+.++.++++++... +. +++|++||..+. .
T Consensus 66 ~d~vi~~a~~~~-------~----------------~~~~~~~~l~~a~~~~----~~------~~~v~~Ss~~~~-~-- 109 (286)
T 2zcu_A 66 VEKLLLISSSEV-------G----------------QRAPQHRNVINAAKAA----GV------KFIAYTSLLHAD-T-- 109 (286)
T ss_dssp CSEEEECC-------------------------------CHHHHHHHHHHHH----TC------CEEEEEEETTTT-T--
T ss_pred CCEEEEeCCCCc-------h----------------HHHHHHHHHHHHHHHc----CC------CEEEEECCCCCC-C--
Confidence 899999998531 0 2566777777776542 21 289999998664 1
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc---------cc--ccCCCCCCCCChHHHHHH
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR---------PF--QRNVPEGKLFTKEFSVQK 256 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~---------~~--~~~~~~~~~~~~~~~a~~ 256 (282)
....|+.+|.+.+.+.+. . +++++.++||++.+++.. .. ..........+++++|+.
T Consensus 110 ---~~~~y~~sK~~~e~~~~~-------~--~~~~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~ 177 (286)
T 2zcu_A 110 ---SPLGLADEHIETEKMLAD-------S--GIVYTLLRNGWYSENYLASAPAALEHGVFIGAAGDGKIASATRADYAAA 177 (286)
T ss_dssp ---CCSTTHHHHHHHHHHHHH-------H--CSEEEEEEECCBHHHHHTTHHHHHHHTEEEESCTTCCBCCBCHHHHHHH
T ss_pred ---CcchhHHHHHHHHHHHHH-------c--CCCeEEEeChHHhhhhHHHhHHhhcCCceeccCCCCccccccHHHHHHH
Confidence 124799999999988753 2 788999999987665321 00 111122355789999999
Q ss_pred HHHHHhhcCCCCCCceeecCCc
Q 023441 257 LLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 257 ~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
+..++... ..+|..+.+.++
T Consensus 178 ~~~~~~~~--~~~g~~~~i~~~ 197 (286)
T 2zcu_A 178 AARVISEA--GHEGKVYELAGD 197 (286)
T ss_dssp HHHHHHSS--SCTTCEEEECCS
T ss_pred HHHHhcCC--CCCCceEEEeCC
Confidence 99999753 246777877665
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-16 Score=135.32 Aligned_cols=193 Identities=15% Similarity=0.123 Sum_probs=136.7
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++|||||+|+||.+++++|+ +|++ |++++|+.. ++.+|++|.+++.++++.. ++|
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~g~~--V~~~~r~~~-----------------~~~~D~~d~~~~~~~~~~~-----~~d 56 (299)
T 1n2s_A 2 NILLFGKTGQVGWELQRSLA-PVGN--LIALDVHSK-----------------EFCGDFSNPKGVAETVRKL-----RPD 56 (299)
T ss_dssp EEEEECTTSHHHHHHHHHTT-TTSE--EEEECTTCS-----------------SSCCCTTCHHHHHHHHHHH-----CCS
T ss_pred eEEEECCCCHHHHHHHHHhh-cCCe--EEEeccccc-----------------cccccCCCHHHHHHHHHhc-----CCC
Confidence 69999999999999999999 8977 999988762 2468999999998888754 699
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC---
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD--- 186 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~--- 186 (282)
++||+||... . ....++++..+++|+.++.++++++... + .++|++||.....+.
T Consensus 57 ~vih~a~~~~-------~----~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~-------~~~v~~SS~~vy~~~~~~ 114 (299)
T 1n2s_A 57 VIVNAAAHTA-------V----DKAESEPELAQLLNATSVEAIAKAANET----G-------AWVVHYSTDYVFPGTGDI 114 (299)
T ss_dssp EEEECCCCCC-------H----HHHTTCHHHHHHHHTHHHHHHHHHHTTT----T-------CEEEEEEEGGGSCCCTTC
T ss_pred EEEECcccCC-------H----hhhhcCHHHHHHHHHHHHHHHHHHHHHc----C-------CcEEEEecccEEeCCCCC
Confidence 9999999753 1 1123456778999999999999988542 1 279999997543221
Q ss_pred -----CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCC-------CCCC
Q 023441 187 -----NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNV-------PEGK 246 (282)
Q Consensus 187 -----~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~-------~~~~ 246 (282)
.+......|+.+|.+.+.+++.++. +++.+.|+.+..+....+. ... ....
T Consensus 115 ~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~---------~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (299)
T 1n2s_A 115 PWQETDATSPLNVYGKTKLAGEKALQDNCP---------KHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVINDQYGA 185 (299)
T ss_dssp CBCTTSCCCCSSHHHHHHHHHHHHHHHHCS---------SEEEEEECSEECSSSCCHHHHHHHHHHHCSEEEEECSCEEC
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHHhCC---------CeEEEeeeeecCCCcCcHHHHHHHHHhcCCCEEeecCcccC
Confidence 1122356899999999998876532 5677799998776432110 000 1123
Q ss_pred CCChHHHHHHHHHHHhhcCCCC-CCceeecCCc
Q 023441 247 LFTKEFSVQKLLNIINNIKSHD-NGKFFAWDGQ 278 (282)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~-~g~~~~~d~~ 278 (282)
...++++|+.+..++....... .|..+.+.++
T Consensus 186 ~i~v~Dva~~~~~~~~~~~~~~~~~~~~~i~~~ 218 (299)
T 1n2s_A 186 PTGAELLADCTAHAIRVALNKPEVAGLYHLVAG 218 (299)
T ss_dssp CEEHHHHHHHHHHHHHHHHHCGGGCEEEECCCB
T ss_pred CeeHHHHHHHHHHHHHHhccccccCceEEEeCC
Confidence 4468999999999987642122 3556665543
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-16 Score=135.63 Aligned_cols=199 Identities=14% Similarity=0.039 Sum_probs=132.4
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcC-CCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKN-DKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G-~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+|+++||||||+||.+++++|+++| ++ |++++|+..+... ..+. ...+.++.+|++|.+++.++++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~--V~~~~R~~~~~~~-~~l~---~~~~~~~~~D~~d~~~l~~~~~------- 71 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFK--VRVVTRNPRKKAA-KELR---LQGAEVVQGDQDDQVIMELALN------- 71 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSE--EEEEESCTTSHHH-HHHH---HTTCEEEECCTTCHHHHHHHHT-------
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCce--EEEEEcCCCCHHH-HHHH---HCCCEEEEecCCCHHHHHHHHh-------
Confidence 5899999999999999999999998 76 9999998765421 1111 1368899999999998887765
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
.+|++|||+|... .. ....|+.+..++++++. +.+. +++|++|+.. ..+.
T Consensus 72 ~~d~vi~~a~~~~-------~~------------~~~~~~~~~~~~~~aa~----~~gv------~~iv~~S~~~-~~~~ 121 (299)
T 2wm3_A 72 GAYATFIVTNYWE-------SC------------SQEQEVKQGKLLADLAR----RLGL------HYVVYSGLEN-IKKL 121 (299)
T ss_dssp TCSEEEECCCHHH-------HT------------CHHHHHHHHHHHHHHHH----HHTC------SEEEECCCCC-HHHH
T ss_pred cCCEEEEeCCCCc-------cc------------cchHHHHHHHHHHHHHH----HcCC------CEEEEEcCcc-cccc
Confidence 5899999998642 00 12344555555555543 3222 2788866543 2221
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-----C------CCC----CCCCChH
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-----N------VPE----GKLFTKE 251 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-----~------~~~----~~~~~~~ 251 (282)
.+......|..+|.+++.+.+. . +++++.++||++.+++...+.. . .+. ..+.+++
T Consensus 122 ~~~~~~~~y~~sK~~~e~~~~~-------~--gi~~~ilrp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 192 (299)
T 2wm3_A 122 TAGRLAAAHFDGKGEVEEYFRD-------I--GVPMTSVRLPCYFENLLSHFLPQKAPDGKSYLLSLPTGDVPMDGMSVS 192 (299)
T ss_dssp TTTSCCCHHHHHHHHHHHHHHH-------H--TCCEEEEECCEEGGGGGTTTCCEECTTSSSEEECCCCTTSCEEEECGG
T ss_pred CCCcccCchhhHHHHHHHHHHH-------C--CCCEEEEeecHHhhhchhhcCCcccCCCCEEEEEecCCCCccceecHH
Confidence 1111235799999999988763 2 6888899999988775331110 1 111 1345789
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
++++.+..++.... ...|..+.+.+..
T Consensus 193 Dva~~~~~~l~~~~-~~~g~~~~~~g~~ 219 (299)
T 2wm3_A 193 DLGPVVLSLLKMPE-KYVGQNIGLSTCR 219 (299)
T ss_dssp GHHHHHHHHHHSHH-HHTTCEEECCSEE
T ss_pred HHHHHHHHHHcChh-hhCCeEEEeeecc
Confidence 99999999987532 1256677766544
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=147.04 Aligned_cols=206 Identities=12% Similarity=0.057 Sum_probs=143.5
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc---ccccc---------ccCCCceeEEEeeCCChhHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG---LLDLK---------NRFPERLDVLQLDLTVESTIE 95 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~---~~~~~---------~~~~~~v~~~~~Dls~~~~~~ 95 (282)
.+++|||||||.||.+++++|.+.|++ |++++|+...... +.+.+ .....++.++.+|++|++.+.
T Consensus 150 ~~~VLVTGatG~iG~~l~~~L~~~g~~--V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 227 (508)
T 4f6l_B 150 LGNTLLTGATGFLGAYLIEALQGYSHR--IYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 227 (508)
T ss_dssp CEEEEESCTTSHHHHHHHHHTBTTEEE--EEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC
T ss_pred CCeEEEECCccchHHHHHHHHHhcCCE--EEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC
Confidence 489999999999999999999999987 9999998874322 11111 122468999999999988776
Q ss_pred HHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEE
Q 023441 96 ASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVA 175 (282)
Q Consensus 96 ~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv 175 (282)
...++|+|||||+... . ...+...+.+|+.++.++++.+... . .++|
T Consensus 228 --------~~~~~D~Vih~Aa~~~-------~-------~~~~~~~~~~Nv~gt~~ll~~a~~~----~-------~~~v 274 (508)
T 4f6l_B 228 --------LPENMDTIIHAGARTD-------H-------FGDDDEFEKVNVQGTVDVIRLAQQH----H-------ARLI 274 (508)
T ss_dssp --------CSSCCSEEEECCCC----------------------CCHHHHHHHHHHHHHHHHTT----T-------CEEE
T ss_pred --------CccCCCEEEECCceec-------C-------CCCHHHHhhhHHHHHHHHHHHHHhC----C-------CcEE
Confidence 3468999999999753 1 1245667889999999999998761 1 2899
Q ss_pred Eeecccc--ccC----------CC---CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-
Q 023441 176 NLSARVG--SIG----------DN---RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ- 239 (282)
Q Consensus 176 ~~ss~~~--~~~----------~~---~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~- 239 (282)
++||... ... .. +......|+.+|...+.+.+.++. . +++++.+.||.+..+......
T Consensus 275 ~iSS~~vG~~~~~~~~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~--gi~~~ilRp~~v~G~~~~~~~~ 348 (508)
T 4f6l_B 275 YVSTISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN----N--GLDGRIVRVGNLTSPYNGRWHM 348 (508)
T ss_dssp EEEESCTTSEECTTCSCCEECTTCSCSSBCCCSHHHHHHHHHHHHHHHHHH----T--TCEEEEEEECCEESCSSSCCCC
T ss_pred EeCChhhccCCccCCcCcccccccccccccCCCcHHHHHHHHHHHHHHHHH----c--CCCEEEEecceeccCCCCCccc
Confidence 9999776 100 00 012456899999999999887654 3 799999999998766432210
Q ss_pred ------------------cCC------CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 240 ------------------RNV------PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 240 ------------------~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
... ....+.+.+++|++++.++.... .|..|.+.+
T Consensus 349 ~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~v~v~DvA~ai~~~~~~~~---~~~~~nl~~ 407 (508)
T 4f6l_B 349 RNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNT---PQIIYHVLS 407 (508)
T ss_dssp TTCTTCHHHHHHHHHTTCSEEETTGGGSEEECEEHHHHHHHHHHHTTBCC---SCSEEEESC
T ss_pred CCcchHHHHHHHHHHHHcCCCCCCccCceEEEEcHHHHHHHHHHHHhCCC---CCCEEEeCC
Confidence 000 01134568999999999887543 556665543
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-15 Score=129.01 Aligned_cols=187 Identities=14% Similarity=0.115 Sum_probs=125.4
Q ss_pred EEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++|||||||+||++++++|++. |++ |++++|+.++..... ..++.++.+|++|++++.++++ ++
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g~~--V~~~~R~~~~~~~~~------~~~v~~~~~D~~d~~~l~~~~~-------~~ 66 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHIDH--FHIGVRNVEKVPDDW------RGKVSVRQLDYFNQESMVEAFK-------GM 66 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCTT--EEEEESSGGGSCGGG------BTTBEEEECCTTCHHHHHHHTT-------TC
T ss_pred EEEEEcCCchHHHHHHHHHhhCCCCc--EEEEECCHHHHHHhh------hCCCEEEEcCCCCHHHHHHHHh-------CC
Confidence 5999999999999999999998 888 999999887654321 2478999999999998887765 68
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|++|||+|... . ...|+.++.++++++. +.+- +++|++||......
T Consensus 67 d~vi~~a~~~~-------~--------------~~~~~~~~~~l~~aa~----~~gv------~~iv~~Ss~~~~~~--- 112 (289)
T 3e48_A 67 DTVVFIPSIIH-------P--------------SFKRIPEVENLVYAAK----QSGV------AHIIFIGYYADQHN--- 112 (289)
T ss_dssp SEEEECCCCCC-------S--------------HHHHHHHHHHHHHHHH----HTTC------CEEEEEEESCCSTT---
T ss_pred CEEEEeCCCCc-------c--------------chhhHHHHHHHHHHHH----HcCC------CEEEEEcccCCCCC---
Confidence 99999999753 1 1124555555555543 3332 28999999543211
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------ccCCCC----CCCCChHHHHHHH
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------QRNVPE----GKLFTKEFSVQKL 257 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------~~~~~~----~~~~~~~~~a~~~ 257 (282)
..|..++... .+...+... +++++.+.||++.+++...+ ....+. ..+.+++++|+.+
T Consensus 113 ----~~~~~~~~~~-----~~e~~~~~~--g~~~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~ 181 (289)
T 3e48_A 113 ----NPFHMSPYFG-----YASRLLSTS--GIDYTYVRMAMYMDPLKPYLPELMNMHKLIYPAGDGRINYITRNDIARGV 181 (289)
T ss_dssp ----CCSTTHHHHH-----HHHHHHHHH--CCEEEEEEECEESTTHHHHHHHHHHHTEECCCCTTCEEEEECHHHHHHHH
T ss_pred ----CCCccchhHH-----HHHHHHHHc--CCCEEEEeccccccccHHHHHHHHHCCCEecCCCCceeeeEEHHHHHHHH
Confidence 2233333221 222223334 78999999999988753210 001111 2356899999999
Q ss_pred HHHHhhcCCCCCCceeecCCc
Q 023441 258 LNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 258 ~~~~~~~~~~~~g~~~~~d~~ 278 (282)
..++...... |..+.+.++
T Consensus 182 ~~~l~~~~~~--g~~~~~~~~ 200 (289)
T 3e48_A 182 IAIIKNPDTW--GKRYLLSGY 200 (289)
T ss_dssp HHHHHCGGGT--TCEEEECCE
T ss_pred HHHHcCCCcC--CceEEeCCC
Confidence 9999865432 667766643
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.1e-15 Score=129.94 Aligned_cols=186 Identities=11% Similarity=0.040 Sum_probs=125.8
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccc-ccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK-NRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~-~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+..+++|||||||.||++++++|+++|++ |++++|+........+.+ .-...++.++.+|++|.+++.+++++.
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~--V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~--- 82 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRP--TYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEH--- 82 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHT---
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCC--EEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhC---
Confidence 34679999999999999999999999987 999999873321111111 111257899999999999999888753
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++|+|||++|.. |+.+..++++++...- .- .+++. | .++..
T Consensus 83 --~~d~Vi~~a~~~--------------------------n~~~~~~l~~aa~~~g---~v------~~~v~-S-~~g~~ 123 (346)
T 3i6i_A 83 --EIDIVVSTVGGE--------------------------SILDQIALVKAMKAVG---TI------KRFLP-S-EFGHD 123 (346)
T ss_dssp --TCCEEEECCCGG--------------------------GGGGHHHHHHHHHHHC---CC------SEEEC-S-CCSSC
T ss_pred --CCCEEEECCchh--------------------------hHHHHHHHHHHHHHcC---Cc------eEEee-c-ccCCC
Confidence 699999999862 5667777777765432 01 25654 3 34332
Q ss_pred C--CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------------CCCCCC
Q 023441 185 G--DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------------NVPEGK 246 (282)
Q Consensus 185 ~--~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------------~~~~~~ 246 (282)
. ..+......|..+|..++.+.+. . ++.+..++||++...+...+.. ......
T Consensus 124 ~~e~~~~~p~~~y~~sK~~~e~~l~~-------~--g~~~tivrpg~~~g~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~ 194 (346)
T 3i6i_A 124 VNRADPVEPGLNMYREKRRVRQLVEE-------S--GIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQIYGDGNVKAY 194 (346)
T ss_dssp TTTCCCCTTHHHHHHHHHHHHHHHHH-------T--TCCBEEEECCEESSCCCSCC-----CCCCSSCEEEETTSCCCEE
T ss_pred CCccCcCCCcchHHHHHHHHHHHHHH-------c--CCCEEEEEecccccccCccccccccccCCCceEEEccCCCceEE
Confidence 1 12234557899999998877654 2 6777888999887654322110 011224
Q ss_pred CCChHHHHHHHHHHHhhc
Q 023441 247 LFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~ 264 (282)
+.+++++++.++.++...
T Consensus 195 ~i~~~Dva~~~~~~l~~~ 212 (346)
T 3i6i_A 195 FVAGTDIGKFTMKTVDDV 212 (346)
T ss_dssp EECHHHHHHHHHHHTTCG
T ss_pred ecCHHHHHHHHHHHHhCc
Confidence 568899999999998754
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=129.48 Aligned_cols=177 Identities=15% Similarity=0.090 Sum_probs=129.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCC-CcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKND-KGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~-~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++|||||+|.||++++++|+++|. + |+..+|+ +|.+++.++++ ++
T Consensus 2 ~VlVtGatG~iG~~l~~~L~~~g~~~--v~~~d~~-------------------------~d~~~l~~~~~-------~~ 47 (369)
T 3st7_A 2 NIVITGAKGFVGKNLKADLTSTTDHH--IFEVHRQ-------------------------TKEEELESALL-------KA 47 (369)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHCCCE--EEECCTT-------------------------CCHHHHHHHHH-------HC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCE--EEEECCC-------------------------CCHHHHHHHhc-------cC
Confidence 699999999999999999999997 4 5554443 78888888876 48
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|++||+||... .+.....+++|+.++.++++++...-. ..++|++||.....
T Consensus 48 d~Vih~a~~~~---------------~~~~~~~~~~n~~~~~~l~~a~~~~~~---------~~~~v~~Ss~~~~~---- 99 (369)
T 3st7_A 48 DFIVHLAGVNR---------------PEHDKEFSLGNVSYLDHVLDILTRNTK---------KPAILLSSSIQATQ---- 99 (369)
T ss_dssp SEEEECCCSBC---------------TTCSTTCSSSCCBHHHHHHHHHTTCSS---------CCEEEEEEEGGGGS----
T ss_pred CEEEECCcCCC---------------CCCHHHHHHHHHHHHHHHHHHHHHhCC---------CCeEEEeCchhhcC----
Confidence 99999999763 123455688999999999998754211 12899999986542
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc------------ccCCC--------CCCCC
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF------------QRNVP--------EGKLF 248 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~------------~~~~~--------~~~~~ 248 (282)
...|+.+|.+.+.+.+.++.+. ++++..+.|+.+..+..... ....+ ...+.
T Consensus 100 ---~~~Y~~sK~~~E~~~~~~~~~~-----g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 171 (369)
T 3st7_A 100 ---DNPYGESKLQGEQLLREYAEEY-----GNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLN 171 (369)
T ss_dssp ---CSHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCCSCTTCEEEEE
T ss_pred ---CCCchHHHHHHHHHHHHHHHHh-----CCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEecCCCeEEEEE
Confidence 4589999999999999998876 57788889998876643210 01111 12345
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
..+++|+.++.++...... .|..+.+.+
T Consensus 172 ~v~Dva~~~~~~l~~~~~~-~~~~~~i~~ 199 (369)
T 3st7_A 172 YVDDIVAEIKRAIEGTPTI-ENGVPTVPN 199 (369)
T ss_dssp EHHHHHHHHHHHHHTCCCE-ETTEECCSC
T ss_pred EHHHHHHHHHHHHhCCccc-CCceEEeCC
Confidence 6899999999999865321 255665543
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-13 Score=122.56 Aligned_cols=203 Identities=13% Similarity=0.035 Sum_probs=131.7
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcC-----CCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKN-----DKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G-----~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|+++|||||+|.||.+++++|+++| ++ |++++|+..... . ...++.++.+|++|.+++.++++..
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~--V~~~~r~~~~~~----~---~~~~~~~~~~Dl~d~~~~~~~~~~~- 70 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWK--VYGVARRTRPAW----H---EDNPINYVQCDISDPDDSQAKLSPL- 70 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEE--EEEEESSCCCSC----C---CSSCCEEEECCTTSHHHHHHHHTTC-
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceE--EEEEeCCCCccc----c---ccCceEEEEeecCCHHHHHHHHhcC-
Confidence 5789999999999999999999999 66 999999876543 1 1347889999999999887776532
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEE-------
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVA------- 175 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv------- 175 (282)
+++|++||+||... ......+++|+.++.++++++.+....- .++|
T Consensus 71 ---~~~d~vih~a~~~~----------------~~~~~~~~~n~~~~~~l~~a~~~~~~~~--------~~~v~~~g~~i 123 (364)
T 2v6g_A 71 ---TDVTHVFYVTWANR----------------STEQENCEANSKMFRNVLDAVIPNCPNL--------KHISLQTGRKH 123 (364)
T ss_dssp ---TTCCEEEECCCCCC----------------SSHHHHHHHHHHHHHHHHHHHTTTCTTC--------CEEEEECCTHH
T ss_pred ---CCCCEEEECCCCCc----------------chHHHHHHHhHHHHHHHHHHHHHhcccc--------ceEEeccCceE
Confidence 24999999999752 1345678999999999999987652111 2555
Q ss_pred EeeccccccCC--------CC---CCCcccchhhHHHHHHHHHHHHHHhccCCCC-eEEEEEecccccCCCCcc------
Q 023441 176 NLSARVGSIGD--------NR---LGGWHSYRASKAALNQLTKSVSVEFGRKKDP-VICILLHPGTVDTDLSRP------ 237 (282)
Q Consensus 176 ~~ss~~~~~~~--------~~---~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~-i~v~~i~Pg~v~t~~~~~------ 237 (282)
++||....-.. +. .+....| .+.+.+.+.++.+ . + +++.++.|+.+..+....
T Consensus 124 ~~Ss~~vyg~~~~~~~~~~E~~~~~~~~~~y----~~~E~~~~~~~~~---~--~~~~~~ilRp~~v~G~~~~~~~~~~~ 194 (364)
T 2v6g_A 124 YMGPFESYGKIESHDPPYTEDLPRLKYMNFY----YDLEDIMLEEVEK---K--EGLTWSVHRPGNIFGFSPYSMMNLVG 194 (364)
T ss_dssp HHCCGGGTTTSCCCCSSBCTTSCCCSSCCHH----HHHHHHHHHHHTT---S--TTCEEEEEEESSEECCCTTCSSCHHH
T ss_pred EEechhhccccccCCCCCCccccCCccchhh----HHHHHHHHHHhhc---C--CCceEEEECCCceeCCCCCcccchHH
Confidence 67776432110 00 1112345 2234444433322 2 4 899999999987653221
Q ss_pred -------c--ccCCCC------------CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 238 -------F--QRNVPE------------GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 238 -------~--~~~~~~------------~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
. ....+. ....+.+++|++++.++... ...|..+.+.++
T Consensus 195 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~v~Dva~a~~~~~~~~--~~~g~~~ni~~~ 254 (364)
T 2v6g_A 195 TLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDP--YAKNEAFNVSNG 254 (364)
T ss_dssp HHHHHHHHHHHHTCCBCCCSCHHHHHSCBCCEEHHHHHHHHHHHHHCG--GGTTEEEEECCS
T ss_pred HHHHHHHHHHhcCCceecCCCcccccccCCCCcHHHHHHHHHHHHhCC--CCCCceEEecCC
Confidence 1 011111 11223478999999988753 235666665443
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.8e-14 Score=121.34 Aligned_cols=177 Identities=15% Similarity=0.133 Sum_probs=117.5
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC-------CcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-------NGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~-------~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
+++++||||||+||.+++++|+++|++ |++++|+. ++.+.+.++ . ...+.++.+|++|.+++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~--V~~~~R~~~~~~~~~~~~~~~~~l-~--~~~v~~v~~D~~d~~~l~~~~~- 75 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNP--TYALVRKTITAANPETKEELIDNY-Q--SLGVILLEGDINDHETLVKAIK- 75 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCC--EEEEECCSCCSSCHHHHHHHHHHH-H--HTTCEEEECCTTCHHHHHHHHT-
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCc--EEEEECCCcccCChHHHHHHHHHH-H--hCCCEEEEeCCCCHHHHHHHHh-
Confidence 578999999999999999999999988 88899986 222111111 1 1368899999999998887775
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeec
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSA 179 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss 179 (282)
.+|++|||+|... +.+..++++++.. .+ - .++| .|
T Consensus 76 ------~~d~vi~~a~~~~--------------------------~~~~~~l~~aa~~----~g~v------~~~v--~S 111 (307)
T 2gas_A 76 ------QVDIVICAAGRLL--------------------------IEDQVKIIKAIKE----AGNV------KKFF--PS 111 (307)
T ss_dssp ------TCSEEEECSSSSC--------------------------GGGHHHHHHHHHH----HCCC------SEEE--CS
T ss_pred ------CCCEEEECCcccc--------------------------cccHHHHHHHHHh----cCCc------eEEe--ec
Confidence 5999999999641 2234455555432 21 1 2665 24
Q ss_pred cccccCC---CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC---------------
Q 023441 180 RVGSIGD---NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN--------------- 241 (282)
Q Consensus 180 ~~~~~~~---~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~--------------- 241 (282)
.++.... ...+....| .+|++++.+.+. . +++++.++||++.+.+...+...
T Consensus 112 ~~g~~~~~~~~~~p~~~~y-~sK~~~e~~~~~----~-----~i~~~~lrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (307)
T 2gas_A 112 EFGLDVDRHDAVEPVRQVF-EEKASIRRVIEA----E-----GVPYTYLCCHAFTGYFLRNLAQLDATDPPRDKVVILGD 181 (307)
T ss_dssp CCSSCTTSCCCCTTHHHHH-HHHHHHHHHHHH----H-----TCCBEEEECCEETTTTGGGTTCTTCSSCCSSEEEEETT
T ss_pred ccccCcccccCCCcchhHH-HHHHHHHHHHHH----c-----CCCeEEEEcceeeccccccccccccccCCCCeEEEecC
Confidence 4442211 112234578 999998877652 2 57777789999887653321110
Q ss_pred -CCCCCCCChHHHHHHHHHHHhhc
Q 023441 242 -VPEGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 242 -~~~~~~~~~~~~a~~~~~~~~~~ 264 (282)
.....+.+++++++.+..++...
T Consensus 182 ~~~~~~~i~~~Dva~~~~~~l~~~ 205 (307)
T 2gas_A 182 GNVKGAYVTEADVGTFTIRAANDP 205 (307)
T ss_dssp SCSEEEEECHHHHHHHHHHHHTCG
T ss_pred CCcceEEeeHHHHHHHHHHHHcCc
Confidence 01123458999999999999754
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.58 E-value=6e-14 Score=130.21 Aligned_cols=200 Identities=11% Similarity=0.014 Sum_probs=131.8
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
++++|||||+|.||.+++++|+++|++ |++++|+..+.+ .+.+|+.+.. .+.+.+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~--V~~l~R~~~~~~--------------~v~~d~~~~~---------~~~l~~ 201 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHE--VIQLVRKEPKPG--------------KRFWDPLNPA---------SDLLDG 201 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESSSCCTT--------------CEECCTTSCC---------TTTTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEECCCCCcc--------------ceeecccchh---------HHhcCC
Confidence 679999999999999999999999987 999999876532 1556776432 223357
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc---
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI--- 184 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~--- 184 (282)
+|+|||+||... .. ..+.+.....+++|+.++.++++++.. ..+. .++|++||.+..-
T Consensus 202 ~D~Vih~A~~~~-------~~---~~~~~~~~~~~~~Nv~gt~~ll~a~a~---~~~~------~r~V~~SS~~vyg~~~ 262 (516)
T 3oh8_A 202 ADVLVHLAGEPI-------FG---RFNDSHKEAIRESRVLPTKFLAELVAE---STQC------TTMISASAVGFYGHDR 262 (516)
T ss_dssp CSEEEECCCC---------------CCGGGHHHHHHHTHHHHHHHHHHHHH---CSSC------CEEEEEEEGGGGCSEE
T ss_pred CCEEEECCCCcc-------cc---ccchhHHHHHHHHHHHHHHHHHHHHHh---cCCC------CEEEEeCcceEecCCC
Confidence 999999999753 11 333456778899999999999997442 2222 3899999965432
Q ss_pred C-----CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc-------ccccC--------CCC
Q 023441 185 G-----DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR-------PFQRN--------VPE 244 (282)
Q Consensus 185 ~-----~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~-------~~~~~--------~~~ 244 (282)
. .........|+.+|...+.+.+.. ... +++++++.||.+..+... ..... ...
T Consensus 263 ~~~~~~E~~~~~~~~y~~~~~~~E~~~~~~----~~~--gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~g~~~~~g~g~~~ 336 (516)
T 3oh8_A 263 GDEILTEESESGDDFLAEVCRDWEHATAPA----SDA--GKRVAFIRTGVALSGRGGMLPLLKTLFSTGLGGKFGDGTSW 336 (516)
T ss_dssp EEEEECTTSCCCSSHHHHHHHHHHHTTHHH----HHT--TCEEEEEEECEEEBTTBSHHHHHHHTTC---CCCCTTSCCE
T ss_pred CCCccCCCCCCCcChHHHHHHHHHHHHHHH----HhC--CCCEEEEEeeEEECCCCChHHHHHHHHHhCCCcccCCCCce
Confidence 0 011123456777787766554432 233 799999999999876421 01100 011
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 245 GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
..+...++++++++.++.... ..|.+...+++.
T Consensus 337 ~~~i~v~Dva~ai~~~l~~~~--~~g~~ni~~~~~ 369 (516)
T 3oh8_A 337 FSWIAIDDLTDIYYRAIVDAQ--ISGPINAVAPNP 369 (516)
T ss_dssp ECEEEHHHHHHHHHHHHHCTT--CCEEEEESCSCC
T ss_pred EceEeHHHHHHHHHHHHhCcc--cCCcEEEECCCC
Confidence 244578999999999997543 455544444443
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.56 E-value=8e-14 Score=119.28 Aligned_cols=185 Identities=14% Similarity=0.031 Sum_probs=123.9
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
+++||||| |.||.+++++|+++|++ |++++|+..+...+.. ..+.++.+|++|.+ +.++
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~------~~~~~~~~D~~d~~------------~~~~ 64 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQGWR--IIGTSRNPDQMEAIRA------SGAEPLLWPGEEPS------------LDGV 64 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGGTCE--EEEEESCGGGHHHHHH------TTEEEEESSSSCCC------------CTTC
T ss_pred CcEEEECC-cHHHHHHHHHHHHCCCE--EEEEEcChhhhhhHhh------CCCeEEEecccccc------------cCCC
Confidence 78999998 99999999999999987 9999998765433221 36899999999943 4579
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC---
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG--- 185 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~--- 185 (282)
|++||+|+... .. +. . .-++++++... . .+. .++|++||....-.
T Consensus 65 d~vi~~a~~~~-------~~-------~~----~------~~~l~~a~~~~-~-~~~------~~~v~~Ss~~vyg~~~~ 112 (286)
T 3ius_A 65 THLLISTAPDS-------GG-------DP----V------LAALGDQIAAR-A-AQF------RWVGYLSTTAVYGDHDG 112 (286)
T ss_dssp CEEEECCCCBT-------TB-------CH----H------HHHHHHHHHHT-G-GGC------SEEEEEEEGGGGCCCTT
T ss_pred CEEEECCCccc-------cc-------cH----H------HHHHHHHHHhh-c-CCc------eEEEEeecceecCCCCC
Confidence 99999999763 11 00 0 12233333221 0 111 38999998753311
Q ss_pred -----CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc---cC--------CCCCCCCC
Q 023441 186 -----DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ---RN--------VPEGKLFT 249 (282)
Q Consensus 186 -----~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~---~~--------~~~~~~~~ 249 (282)
..+......|+.+|.+.+.+.+.+ . +++++++.|+.+..+....+. .. .....+..
T Consensus 113 ~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~------~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 184 (286)
T 3ius_A 113 AWVDETTPLTPTAARGRWRVMAEQQWQAV------P--NLPLHVFRLAGIYGPGRGPFSKLGKGGIRRIIKPGQVFSRIH 184 (286)
T ss_dssp CEECTTSCCCCCSHHHHHHHHHHHHHHHS------T--TCCEEEEEECEEEBTTBSSSTTSSSSCCCEEECTTCCBCEEE
T ss_pred CCcCCCCCCCCCCHHHHHHHHHHHHHHhh------c--CCCEEEEeccceECCCchHHHHHhcCCccccCCCCcccceEE
Confidence 112233457999999999888866 2 788888999998766422111 11 11224456
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
.+++|+.++.++.... .|..+.+.+
T Consensus 185 v~Dva~a~~~~~~~~~---~g~~~~i~~ 209 (286)
T 3ius_A 185 VEDIAQVLAASMARPD---PGAVYNVCD 209 (286)
T ss_dssp HHHHHHHHHHHHHSCC---TTCEEEECC
T ss_pred HHHHHHHHHHHHhCCC---CCCEEEEeC
Confidence 7999999999998654 565666543
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=8e-14 Score=120.77 Aligned_cols=184 Identities=9% Similarity=0.064 Sum_probs=119.4
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc--cccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA--TGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~--~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.++++||||||+||.+++++|+++|++ |++++|+.... ++...+..-....+.++.+|++|.+++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~--V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~------ 75 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHP--TYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK------ 75 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCC--EEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT------
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCc--EEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHh------
Confidence 468999999999999999999999988 99999986432 11111100012468899999999998887765
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeecccccc
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~~~~~ 184 (282)
++|++||++|... . ..|+.+..++++++.. .+ - .++|. |.++..
T Consensus 76 -~~d~vi~~a~~~~-------~---------------~~~~~~~~~l~~aa~~----~g~v------~~~v~--S~~g~~ 120 (313)
T 1qyd_A 76 -QVDVVISALAGGV-------L---------------SHHILEQLKLVEAIKE----AGNI------KRFLP--SEFGMD 120 (313)
T ss_dssp -TCSEEEECCCCSS-------S---------------STTTTTHHHHHHHHHH----SCCC------SEEEC--SCCSSC
T ss_pred -CCCEEEECCcccc-------c---------------hhhHHHHHHHHHHHHh----cCCC------ceEEe--cCCcCC
Confidence 5899999999753 1 1256666777766643 22 1 26664 444421
Q ss_pred CCC---C-CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------C-------CC
Q 023441 185 GDN---R-LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------N-------VP 243 (282)
Q Consensus 185 ~~~---~-~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------~-------~~ 243 (282)
... + .+....| .+|.+++.+.+ + . ++.+..++||++.+.+...+.. . ..
T Consensus 121 ~~~~~~~~~p~~~~y-~sK~~~e~~~~----~---~--g~~~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 190 (313)
T 1qyd_A 121 PDIMEHALQPGSITF-IDKRKVRRAIE----A---A--SIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNV 190 (313)
T ss_dssp TTSCCCCCSSTTHHH-HHHHHHHHHHH----H---T--TCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCS
T ss_pred ccccccCCCCCcchH-HHHHHHHHHHH----h---c--CCCeEEEEeceeccccccccccccccccCCCCeEEEeCCCCc
Confidence 111 1 1234578 99999887765 2 2 5666777898875432211100 0 01
Q ss_pred CCCCCChHHHHHHHHHHHhhc
Q 023441 244 EGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~ 264 (282)
...+.+++++++.+..++...
T Consensus 191 ~~~~i~~~Dva~~~~~~l~~~ 211 (313)
T 1qyd_A 191 KGIWVDEDDVGTYTIKSIDDP 211 (313)
T ss_dssp EEEEECHHHHHHHHHHHTTCG
T ss_pred eEEEEEHHHHHHHHHHHHhCc
Confidence 123457899999999988754
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-13 Score=116.24 Aligned_cols=187 Identities=9% Similarity=0.052 Sum_probs=118.3
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC-Cc-----ccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NG-----ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~-~~-----~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.++++||||+|+||.+++++|+++|++ |++++|+. .. .+.+..+ . ...+.++.+|++|.+++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~--V~~~~R~~~~~~~~~~~~~l~~~-~--~~~v~~v~~D~~d~~~l~~a~~-- 76 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHP--TFIYARPLTPDSTPSSVQLREEF-R--SMGVTIIEGEMEEHEKMVSVLK-- 76 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCC--EEEEECCCCTTCCHHHHHHHHHH-H--HTTCEEEECCTTCHHHHHHHHT--
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCc--EEEEECCcccccChHHHHHHHHh-h--cCCcEEEEecCCCHHHHHHHHc--
Confidence 468999999999999999999999988 99999986 21 1111111 1 2468899999999998888776
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeecc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSAR 180 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~ 180 (282)
.+|++|||++... +.+..++++++.. .+ - +++| .|.
T Consensus 77 -----~~d~vi~~a~~~~--------------------------~~~~~~l~~aa~~----~g~v------~~~v--~S~ 113 (321)
T 3c1o_A 77 -----QVDIVISALPFPM--------------------------ISSQIHIINAIKA----AGNI------KRFL--PSD 113 (321)
T ss_dssp -----TCSEEEECCCGGG--------------------------SGGGHHHHHHHHH----HCCC------CEEE--CSC
T ss_pred -----CCCEEEECCCccc--------------------------hhhHHHHHHHHHH----hCCc------cEEe--ccc
Confidence 5899999999641 2233444554433 22 1 2665 344
Q ss_pred ccccCCCC---CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------------ccC
Q 023441 181 VGSIGDNR---LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------------QRN 241 (282)
Q Consensus 181 ~~~~~~~~---~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------------~~~ 241 (282)
++...... .+....| .+|++++.+.+. . ++.+..++||++...+...+ ...
T Consensus 114 ~g~~~~~~~~~~p~~~~y-~sK~~~e~~~~~----~-----~~~~~~lrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (321)
T 3c1o_A 114 FGCEEDRIKPLPPFESVL-EKKRIIRRAIEA----A-----ALPYTYVSANCFGAYFVNYLLHPSPHPNRNDDIVIYGTG 183 (321)
T ss_dssp CSSCGGGCCCCHHHHHHH-HHHHHHHHHHHH----H-----TCCBEEEECCEEHHHHHHHHHCCCSSCCTTSCEEEETTS
T ss_pred cccCccccccCCCcchHH-HHHHHHHHHHHH----c-----CCCeEEEEeceeccccccccccccccccccCceEEecCC
Confidence 44211110 1124578 999999887752 2 45566678887644321100 001
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecC
Q 023441 242 VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWD 276 (282)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d 276 (282)
.......+++++++.+..++.... ..|..+.+.
T Consensus 184 ~~~~~~i~~~Dva~~~~~~l~~~~--~~g~~~~~~ 216 (321)
T 3c1o_A 184 ETKFVLNYEEDIAKYTIKVACDPR--CCNRIVIYR 216 (321)
T ss_dssp CCEEEEECHHHHHHHHHHHHHCGG--GTTEEEECC
T ss_pred CcceeEeeHHHHHHHHHHHHhCcc--ccCeEEEEe
Confidence 112345689999999999997543 235555544
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-13 Score=117.16 Aligned_cols=177 Identities=13% Similarity=0.152 Sum_probs=113.3
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc---cccc--cccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA---TGLL--DLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~---~~~~--~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++++||||||+||.+++++|+++|++ |++++|+.... ++.. +.+. ...+.++.+|++|.+++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~--V~~l~R~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d~~~l~~~~~--- 76 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHP--TFLLVRESTASSNSEKAQLLESFK--ASGANIVHGSIDDHASLVEAVK--- 76 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCC--EEEECCCCCTTTTHHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHHH---
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCC--EEEEECCcccccCHHHHHHHHHHH--hCCCEEEEeccCCHHHHHHHHc---
Confidence 478999999999999999999999988 88999986532 1111 1111 2468899999999999888776
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeeccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARV 181 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~~ 181 (282)
.+|++||+++... +.+..++++++... + - +++|. |.+
T Consensus 77 ----~~d~vi~~a~~~~--------------------------~~~~~~l~~aa~~~----g~v------~~~v~--S~~ 114 (308)
T 1qyc_A 77 ----NVDVVISTVGSLQ--------------------------IESQVNIIKAIKEV----GTV------KRFFP--SEF 114 (308)
T ss_dssp ----TCSEEEECCCGGG--------------------------SGGGHHHHHHHHHH----CCC------SEEEC--SCC
T ss_pred ----CCCEEEECCcchh--------------------------hhhHHHHHHHHHhc----CCC------ceEee--ccc
Confidence 5899999998631 12334444544332 1 1 26653 334
Q ss_pred cccCCC--C-CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------------CC
Q 023441 182 GSIGDN--R-LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------------NV 242 (282)
Q Consensus 182 ~~~~~~--~-~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------------~~ 242 (282)
+..... + .+....| .+|..++.+.+. . ++.+..+.||++.+.+...+.. ..
T Consensus 115 g~~~~~~~~~~p~~~~y-~sK~~~e~~~~~----~-----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (308)
T 1qyc_A 115 GNDVDNVHAVEPAKSVF-EVKAKVRRAIEA----E-----GIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGN 184 (308)
T ss_dssp SSCTTSCCCCTTHHHHH-HHHHHHHHHHHH----H-----TCCBEEEECCEEHHHHTTTTTCTTCSSCCSSEEEEETTSC
T ss_pred ccCccccccCCcchhHH-HHHHHHHHHHHh----c-----CCCeEEEEeceeccccccccccccccCCCCCceEEecCCC
Confidence 422111 1 1224578 999998877653 1 4666677898775432211100 01
Q ss_pred CCCCCCChHHHHHHHHHHHhh
Q 023441 243 PEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~ 263 (282)
....+.+++++++.+..++..
T Consensus 185 ~~~~~i~~~Dva~~~~~~l~~ 205 (308)
T 1qyc_A 185 ARVVFVKEEDIGTFTIKAVDD 205 (308)
T ss_dssp CEEEEECHHHHHHHHHTTSSC
T ss_pred ceEEEecHHHHHHHHHHHHhC
Confidence 112345789999999888764
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.7e-13 Score=114.63 Aligned_cols=177 Identities=11% Similarity=0.051 Sum_probs=113.3
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|+++||||+|+||.+++++|+++|++ |++++|+........+.+. ...+.++.+|++|.+++.++++ .+
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~--V~~l~R~~~~~~~~~~~l~--~~~v~~v~~Dl~d~~~l~~a~~-------~~ 80 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHP--TYVFTRPNSSKTTLLDEFQ--SLGAIIVKGELDEHEKLVELMK-------KV 80 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCC--EEEEECTTCSCHHHHHHHH--HTTCEEEECCTTCHHHHHHHHT-------TC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCc--EEEEECCCCchhhHHHHhh--cCCCEEEEecCCCHHHHHHHHc-------CC
Confidence 68999999999999999999999988 8999998752211111111 1368899999999998888775 58
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCC-CCCccceeEEEEeeccccccCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGG-TGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~-~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
|++||+++... +.+..++++++.. .+ - +++|. |.++.....
T Consensus 81 d~vi~~a~~~~--------------------------~~~~~~l~~aa~~----~g~v------~~~v~--S~~g~~~~~ 122 (318)
T 2r6j_A 81 DVVISALAFPQ--------------------------ILDQFKILEAIKV----AGNI------KRFLP--SDFGVEEDR 122 (318)
T ss_dssp SEEEECCCGGG--------------------------STTHHHHHHHHHH----HCCC------CEEEC--SCCSSCTTT
T ss_pred CEEEECCchhh--------------------------hHHHHHHHHHHHh----cCCC------CEEEe--eccccCccc
Confidence 99999998631 2233444554432 22 1 26663 334422111
Q ss_pred CC---CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------ccCCCCCCCCChH
Q 023441 188 RL---GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------QRNVPEGKLFTKE 251 (282)
Q Consensus 188 ~~---~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------~~~~~~~~~~~~~ 251 (282)
.. +....| .+|.+++.+.+. . ++.+..+.||++...+...+ ........+.+++
T Consensus 123 ~~~~~p~~~~y-~sK~~~e~~~~~-------~--~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 192 (318)
T 2r6j_A 123 INALPPFEALI-ERKRMIRRAIEE-------A--NIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGEAKFAMNYEQ 192 (318)
T ss_dssp CCCCHHHHHHH-HHHHHHHHHHHH-------T--TCCBEEEECCEEHHHHHHHHHCTTCCCSEEEEETTSCCEEEEECHH
T ss_pred ccCCCCcchhH-HHHHHHHHHHHh-------c--CCCeEEEEcceehhhhhhhhccccCCCCceEEecCCCceeeEeeHH
Confidence 11 123468 999988877653 2 56666778887644321100 0011123446789
Q ss_pred HHHHHHHHHHhhc
Q 023441 252 FSVQKLLNIINNI 264 (282)
Q Consensus 252 ~~a~~~~~~~~~~ 264 (282)
++++.+..++...
T Consensus 193 Dva~~~~~~l~~~ 205 (318)
T 2r6j_A 193 DIGLYTIKVATDP 205 (318)
T ss_dssp HHHHHHHHHTTCG
T ss_pred HHHHHHHHHhcCc
Confidence 9999999988754
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-13 Score=117.49 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=84.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||+++||||+||+|++++++|+++|++ |++++|+.++.+++.+.+... .++.++.+|++|.++++++++
T Consensus 115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~--V~i~~R~~~~~~~l~~~~~~~-~~~~~~~~D~~~~~~~~~~~~---- 187 (287)
T 1lu9_A 115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAE--VVLCGRKLDKAQAAADSVNKR-FKVNVTAAETADDASRAEAVK---- 187 (287)
T ss_dssp SCCTTCEEEEETCSSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHHHHHH-HTCCCEEEECCSHHHHHHHTT----
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCcCE--EEEEECCHHHHHHHHHHHHhc-CCcEEEEecCCCHHHHHHHHH----
Confidence 4578999999999999999999999999987 999999987766554433221 246788999999988876655
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccch-hhhhhhhhhhhcHHH
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEK-SSLMLAYEVNAVGPI 150 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~-~~~~~~~~~n~~~~~ 150 (282)
.+|+||||+|... ...+..+.+. +.+...+++|+.+.+
T Consensus 188 ---~~DvlVn~ag~g~------~~~~~~~~~~~~~~~~~~dvn~~~~~ 226 (287)
T 1lu9_A 188 ---GAHFVFTAGAIGL------ELLPQAAWQNESSIEIVADYNAQPPL 226 (287)
T ss_dssp ---TCSEEEECCCTTC------CSBCHHHHTTCTTCCEEEECCCSSSC
T ss_pred ---hCCEEEECCCccc------cCCChhHcCchHHHHHHHHhhhhhhH
Confidence 4899999998642 1122333443 667788999998877
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-10 Score=98.94 Aligned_cols=199 Identities=12% Similarity=0.063 Sum_probs=118.8
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++|||||||-||++++++|.++|++ |+.+.|++... + +..| .+ ..+.+..+|
T Consensus 2 kILVTGatGfIG~~L~~~L~~~G~~--V~~l~R~~~~~------------~---~~~~-----~~------~~~~l~~~d 53 (298)
T 4b4o_A 2 RVLVGGGTGFIGTALTQLLNARGHE--VTLVSRKPGPG------------R---ITWD-----EL------AASGLPSCD 53 (298)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSCCTT------------E---EEHH-----HH------HHHCCCSCS
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCE--EEEEECCCCcC------------e---eecc-----hh------hHhhccCCC
Confidence 5899999999999999999999988 88888876431 1 1111 11 112346799
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC---
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD--- 186 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~--- 186 (282)
.+||.+|... .......+.......+.+|+.++-++.+.+...-.+. ..+|+.||.+..-..
T Consensus 54 ~vihla~~~i-------~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~--------~~~i~~Ss~~vyg~~~~~ 118 (298)
T 4b4o_A 54 AAVNLAGENI-------LNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPP--------KAWVLVTGVAYYQPSLTA 118 (298)
T ss_dssp EEEECCCCCS-------SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCC--------SEEEEEEEGGGSCCCSSC
T ss_pred EEEEeccCcc-------cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCc--------eEEEEEeeeeeecCCCCC
Confidence 9999998642 2222334455566778889988888877765432221 257777775543211
Q ss_pred -----CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc---------------ccccCCCCCC
Q 023441 187 -----NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR---------------PFQRNVPEGK 246 (282)
Q Consensus 187 -----~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~---------------~~~~~~~~~~ 246 (282)
.+......|+..+...+. ....... ++++..+.|+.+..+-.. .+........
T Consensus 119 ~~~E~~p~~~~~~~~~~~~~~e~-----~~~~~~~--~~~~~~~r~~~v~g~~~~~~~~~~~~~~~~~~~~~g~g~~~~~ 191 (298)
T 4b4o_A 119 EYDEDSPGGDFDFFSNLVTKWEA-----AARLPGD--STRQVVVRSGVVLGRGGGAMGHMLLPFRLGLGGPIGSGHQFFP 191 (298)
T ss_dssp CBCTTCCCSCSSHHHHHHHHHHH-----HHCCSSS--SSEEEEEEECEEECTTSHHHHHHHHHHHTTCCCCBTTSCSBCC
T ss_pred cccccCCccccchhHHHHHHHHH-----HHHhhcc--CCceeeeeeeeEEcCCCCchhHHHHHHhcCCcceecccCceee
Confidence 111222334433333221 1122333 789999999998766321 0011111234
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 247 LFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+...+|+++++..++... ...|.+...+++.+
T Consensus 192 ~ihv~Dva~a~~~~~~~~--~~~g~yn~~~~~~~ 223 (298)
T 4b4o_A 192 WIHIGDLAGILTHALEAN--HVHGVLNGVAPSSA 223 (298)
T ss_dssp EEEHHHHHHHHHHHHHCT--TCCEEEEESCSCCC
T ss_pred cCcHHHHHHHHHHHHhCC--CCCCeEEEECCCcc
Confidence 457899999999988753 34564444444433
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-10 Score=93.42 Aligned_cols=79 Identities=11% Similarity=0.177 Sum_probs=61.3
Q ss_pred cccCcEEEEecC----------------CCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeC
Q 023441 25 KWKGGVSLVQGA----------------SRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDL 88 (282)
Q Consensus 25 ~~~gk~vlItGa----------------s~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dl 88 (282)
+++||++||||| |||||.++|+.|+++|++ |++++++.. ++ . +..+ -.+|+
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~--V~l~~~~~~-l~-----~---~~g~--~~~dv 71 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGAN--VTLVSGPVS-LP-----T---PPFV--KRVDV 71 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCE--EEEEECSCC-CC-----C---CTTE--EEEEC
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCE--EEEEECCcc-cc-----c---CCCC--eEEcc
Confidence 589999999999 689999999999999998 888877652 11 0 1122 24677
Q ss_pred CChhHHHHHHHHHHHHcCCccEEEECcccCC
Q 023441 89 TVESTIEASAKSIKEKYGSLNLLINASGILS 119 (282)
Q Consensus 89 s~~~~~~~~~~~~~~~~~~id~lv~~ag~~~ 119 (282)
++.+ ++++.+.+.++++|++|||||+..
T Consensus 72 ~~~~---~~~~~v~~~~~~~Dili~~Aav~d 99 (226)
T 1u7z_A 72 MTAL---EMEAAVNASVQQQNIFIGCAAVAD 99 (226)
T ss_dssp CSHH---HHHHHHHHHGGGCSEEEECCBCCS
T ss_pred CcHH---HHHHHHHHhcCCCCEEEECCcccC
Confidence 7754 456677778899999999999874
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=90.29 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=59.7
Q ss_pred cCcEEEEecC----------------CCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCC
Q 023441 27 KGGVSLVQGA----------------SRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV 90 (282)
Q Consensus 27 ~gk~vlItGa----------------s~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~ 90 (282)
+||++||||| ||++|.++|+.|+++|++ |++++|+...... .+..+ |+.+
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~--V~lv~~~~~~~~~-------~~~~~-----~~~~ 67 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYE--VCLITTKRALKPE-------PHPNL-----SIRE 67 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCE--EEEEECTTSCCCC-------CCTTE-----EEEE
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCE--EEEEeCCcccccc-------CCCCe-----EEEE
Confidence 5899999999 788999999999999998 9999987642110 01223 3333
Q ss_pred hhHHHHHHHHHHHHcCCccEEEECcccCC
Q 023441 91 ESTIEASAKSIKEKYGSLNLLINASGILS 119 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~~~id~lv~~ag~~~ 119 (282)
.++..++++.+.+.++++|++|+||++..
T Consensus 68 v~s~~em~~~v~~~~~~~Dili~aAAvsD 96 (232)
T 2gk4_A 68 ITNTKDLLIEMQERVQDYQVLIHSMAVSD 96 (232)
T ss_dssp CCSHHHHHHHHHHHGGGCSEEEECSBCCS
T ss_pred HhHHHHHHHHHHHhcCCCCEEEEcCcccc
Confidence 34566677777778889999999999874
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.3e-09 Score=82.65 Aligned_cols=78 Identities=10% Similarity=0.025 Sum_probs=64.7
Q ss_pred CchhHHHHHHHHhcCCCcEEEEeecCCCcccc---cccccccCCCceeEEEeeCCCh--hHHHHHHHHHHHHcCCccEEE
Q 023441 38 RGIGLEFAKQLLEKNDKGCVIATCRNPNGATG---LLDLKNRFPERLDVLQLDLTVE--STIEASAKSIKEKYGSLNLLI 112 (282)
Q Consensus 38 ~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~---~~~~~~~~~~~v~~~~~Dls~~--~~~~~~~~~~~~~~~~id~lv 112 (282)
+-++.++++.|++.|++ |++..|+..+... ..+.+.+.|.++..+++|++++ ++++++++.+.+.+|+ |+||
T Consensus 26 ~~p~~a~a~~La~~Ga~--vvi~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-dVLV 102 (157)
T 3gxh_A 26 GLPNEQQFSLLKQAGVD--VVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-DVLV 102 (157)
T ss_dssp BCCCHHHHHHHHHTTCC--EEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-CEEE
T ss_pred CCCCHHHHHHHHHcCCC--EEEECCCcccccccccHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-CEEE
Confidence 35789999999999998 8888887655432 2444555577889999999999 9999999999999999 9999
Q ss_pred ECcccC
Q 023441 113 NASGIL 118 (282)
Q Consensus 113 ~~ag~~ 118 (282)
||+|..
T Consensus 103 nnAgg~ 108 (157)
T 3gxh_A 103 HCLANY 108 (157)
T ss_dssp ECSBSH
T ss_pred ECCCCC
Confidence 999975
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-09 Score=94.52 Aligned_cols=154 Identities=11% Similarity=0.034 Sum_probs=99.4
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCC-----cEEEEeecCCC--cccc-cccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDK-----GCVIATCRNPN--GATG-LLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~-----~~vi~~~r~~~--~~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
.+++||||+|.||..++..|+++|.. ..|++.+++.. ..+. ..++. . ..+.++ .|+.+..++.++++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~-~--~~~~~~-~di~~~~~~~~a~~- 79 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELE-D--CAFPLL-AGLEATDDPKVAFK- 79 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHH-T--TTCTTE-EEEEEESCHHHHTT-
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhh-c--cccccc-CCeEeccChHHHhC-
Confidence 47999999999999999999998851 13888887642 1111 11221 1 111223 57776555554442
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
..|++||.||... . + . +...+.+++|+.++.++++.+...-. .. .+++++|+.
T Consensus 80 ------~~D~Vih~Ag~~~-------~-~--~---~~~~~~~~~Nv~~t~~l~~a~~~~~~--~~------~~vvv~snp 132 (327)
T 1y7t_A 80 ------DADYALLVGAAPR-------K-A--G---MERRDLLQVNGKIFTEQGRALAEVAK--KD------VKVLVVGNP 132 (327)
T ss_dssp ------TCSEEEECCCCCC-------C-T--T---CCHHHHHHHHHHHHHHHHHHHHHHSC--TT------CEEEECSSS
T ss_pred ------CCCEEEECCCcCC-------C-C--C---CCHHHHHHHHHHHHHHHHHHHHhhcC--CC------eEEEEeCCc
Confidence 6899999999763 1 1 1 12345789999999999998876420 11 266777765
Q ss_pred cccc-----CCC-CCCCcccchhhHHHHHHHHHHHHHHhc
Q 023441 181 VGSI-----GDN-RLGGWHSYRASKAALNQLTKSVSVEFG 214 (282)
Q Consensus 181 ~~~~-----~~~-~~~~~~~Y~~sKa~~~~l~~~la~e~~ 214 (282)
.... ... +.+....|+.+|...+.+.+.+++.+.
T Consensus 133 ~~~~~~~~~~~~~~~~p~~~yg~tkl~~er~~~~~a~~~g 172 (327)
T 1y7t_A 133 ANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTG 172 (327)
T ss_dssp HHHHHHHHHHTCTTSCGGGEEECCHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHcCCCChhheeccchHHHHHHHHHHHHHhC
Confidence 4210 011 244556799999998988888888763
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.79 E-value=7.3e-09 Score=76.03 Aligned_cols=75 Identities=19% Similarity=0.100 Sum_probs=61.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcC-CCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKN-DKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G-~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.+++++|+|+ |++|.++++.|.+.| .+ |++.+|++++.+... ...+.++.+|+++.+++.++++
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~--v~~~~r~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~------ 68 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYS--VTVADHDLAALAVLN------RMGVATKQVDAKDEAGLAKALG------ 68 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEE--EEEEESCHHHHHHHH------TTTCEEEECCTTCHHHHHHHTT------
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCce--EEEEeCCHHHHHHHH------hCCCcEEEecCCCHHHHHHHHc------
Confidence 4679999999 999999999999999 55 999999877655433 2356788999999887776653
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
.+|++|++++.
T Consensus 69 -~~d~vi~~~~~ 79 (118)
T 3ic5_A 69 -GFDAVISAAPF 79 (118)
T ss_dssp -TCSEEEECSCG
T ss_pred -CCCEEEECCCc
Confidence 68999999964
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.3e-08 Score=86.49 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=68.5
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCC-cEEEEeecCCCccccccccccc-CCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDK-GCVIATCRNPNGATGLLDLKNR-FPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~-~~vi~~~r~~~~~~~~~~~~~~-~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++++|+|| |+||+++++.|+++|.. ..|++.+|+.++.+++.+.... .+.++..+.+|++|.++++++++..
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~----- 75 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV----- 75 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH-----
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh-----
Confidence 57899999 89999999999999841 1499999999887765554432 2346889999999999999998875
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
++|+||||+|..
T Consensus 76 ~~DvVin~ag~~ 87 (405)
T 4ina_A 76 KPQIVLNIALPY 87 (405)
T ss_dssp CCSEEEECSCGG
T ss_pred CCCEEEECCCcc
Confidence 699999999854
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.7e-07 Score=85.23 Aligned_cols=78 Identities=19% Similarity=0.192 Sum_probs=61.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++|+++|+| +|++|+++++.|++.|.+ |++++|+.++.+.+.+.. ..+.++.+|++|.+++.++++
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~--V~v~~R~~~~a~~la~~~----~~~~~~~~Dv~d~~~l~~~l~------- 67 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIK--VTVACRTLESAKKLSAGV----QHSTPISLDVNDDAALDAEVA------- 67 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCE--EEEEESSHHHHHHTTTTC----TTEEEEECCTTCHHHHHHHHT-------
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCE--EEEEECCHHHHHHHHHhc----CCceEEEeecCCHHHHHHHHc-------
Confidence 478999998 799999999999999976 999999876655433322 246788999999888877664
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
++|++|||++..
T Consensus 68 ~~DvVIn~a~~~ 79 (450)
T 1ff9_A 68 KHDLVISLIPYT 79 (450)
T ss_dssp TSSEEEECCC--
T ss_pred CCcEEEECCccc
Confidence 699999999864
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.8e-07 Score=75.28 Aligned_cols=79 Identities=11% Similarity=0.088 Sum_probs=56.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++||||++|||.++++.+...|++ |++++|++++.+.+.+ .+.. ..+|.++.+..+++.+... .+
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~--V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~~~~~~~~--~~ 106 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGAR--IYTTAGSDAKREMLSR----LGVE---YVGDSRSVDFADEILELTD--GY 106 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCE--EEEEESSHHHHHHHHT----TCCS---EEEETTCSTHHHHHHHHTT--TC
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHH----cCCC---EEeeCCcHHHHHHHHHHhC--CC
Confidence 5899999999999999999999999987 9999998765543322 2332 2258887654444333221 13
Q ss_pred CccEEEECcc
Q 023441 107 SLNLLINASG 116 (282)
Q Consensus 107 ~id~lv~~ag 116 (282)
++|++|+|+|
T Consensus 107 ~~D~vi~~~g 116 (198)
T 1pqw_A 107 GVDVVLNSLA 116 (198)
T ss_dssp CEEEEEECCC
T ss_pred CCeEEEECCc
Confidence 6999999997
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=5.9e-08 Score=89.93 Aligned_cols=106 Identities=24% Similarity=0.186 Sum_probs=65.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||+++|||| ||+|++++++|+++|++ |++.+|+.++++++.+.+ +.++. ++.|.+..
T Consensus 360 ~~l~~k~vlV~Ga-GGig~aia~~L~~~G~~--V~i~~R~~~~a~~la~~~---~~~~~----~~~dl~~~--------- 420 (523)
T 2o7s_A 360 SPLASKTVVVIGA-GGAGKALAYGAKEKGAK--VVIANRTYERALELAEAI---GGKAL----SLTDLDNY--------- 420 (523)
T ss_dssp ------CEEEECC-SHHHHHHHHHHHHHCC---CEEEESSHHHHHHHHHHT---TC-CE----ETTTTTTC---------
T ss_pred cccCCCEEEEECC-cHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHc---CCcee----eHHHhhhc---------
Confidence 3578999999999 59999999999999987 889999987766554433 22222 23221100
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHH
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPI 150 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ 150 (282)
..+.+|++|||+|....+.. ...++.+.+.+.+...+++|+.+..
T Consensus 421 ~~~~~DilVN~agvg~~~~~--~~~~~~~~~~~~~~~v~Dvny~p~~ 465 (523)
T 2o7s_A 421 HPEDGMVLANTTSMGMQPNV--EETPISKDALKHYALVFDAVYTPRI 465 (523)
T ss_dssp --CCSEEEEECSSTTCTTCT--TCCSSCTTTGGGEEEEEECCCSSSS
T ss_pred cccCceEEEECCCCCCCCCC--CCCCCChHHcCcCcEEEEEeeCCcc
Confidence 11358999999997532211 0123344455677888999998753
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-07 Score=81.06 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=60.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++|||||++|||.++++.+...|++ |++++|++++.+.+.+ .+.. ..+|.++.+++.+.+.+... +
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~--V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~~~~~~~~~--~ 213 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCK--VVGAAGSDEKIAYLKQ----IGFD---AAFNYKTVNSLEEALKKASP--D 213 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHH----TTCS---EEEETTSCSCHHHHHHHHCT--T
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHh----cCCc---EEEecCCHHHHHHHHHHHhC--C
Confidence 5899999999999999999999999987 9999998766554422 2322 23588875556665555443 5
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|++|+|+|.
T Consensus 214 ~~d~vi~~~g~ 224 (333)
T 1v3u_A 214 GYDCYFDNVGG 224 (333)
T ss_dssp CEEEEEESSCH
T ss_pred CCeEEEECCCh
Confidence 79999999984
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-08 Score=86.14 Aligned_cols=82 Identities=18% Similarity=0.146 Sum_probs=58.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||+++|||++ |+|+++++.|++.| + |++++|+.++.+++.+.+...+.....+.+|+++. .+
T Consensus 124 ~~l~~k~vlV~GaG-giG~aia~~L~~~G-~--V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~----------~~ 189 (287)
T 1nvt_A 124 GRVKDKNIVIYGAG-GAARAVAFELAKDN-N--IIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGL----------DV 189 (287)
T ss_dssp CCCCSCEEEEECCS-HHHHHHHHHHTSSS-E--EEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECT----------TC
T ss_pred CCcCCCEEEEECch-HHHHHHHHHHHHCC-C--EEEEECCHHHHHHHHHHHhhhcccccceeEEEeeH----------HH
Confidence 46789999999997 99999999999999 7 99999988776654443321100001123555552 34
Q ss_pred HcCCccEEEECcccCC
Q 023441 104 KYGSLNLLINASGILS 119 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~ 119 (282)
.++++|+||||+|...
T Consensus 190 ~~~~~DilVn~ag~~~ 205 (287)
T 1nvt_A 190 DLDGVDIIINATPIGM 205 (287)
T ss_dssp CCTTCCEEEECSCTTC
T ss_pred hhCCCCEEEECCCCCC
Confidence 4578999999999764
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=6e-07 Score=81.81 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=61.7
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..++++++++|+|+ |++|+++++.|++. |.+ |++.+|+.++.+++.+. ..+.++.+|++|.+++.++++
T Consensus 18 ~~~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~--V~v~~R~~~ka~~la~~-----~~~~~~~~D~~d~~~l~~~l~-- 87 (467)
T 2axq_A 18 EGRHMGKNVLLLGS-GFVAQPVIDTLAANDDIN--VTVACRTLANAQALAKP-----SGSKAISLDVTDDSALDKVLA-- 87 (467)
T ss_dssp -----CEEEEEECC-STTHHHHHHHHHTSTTEE--EEEEESSHHHHHHHHGG-----GTCEEEECCTTCHHHHHHHHH--
T ss_pred ccCCCCCEEEEECC-hHHHHHHHHHHHhCCCCe--EEEEECCHHHHHHHHHh-----cCCcEEEEecCCHHHHHHHHc--
Confidence 46678899999997 99999999999998 554 99999998776554332 135677899999888777664
Q ss_pred HHHcCCccEEEECcccC
Q 023441 102 KEKYGSLNLLINASGIL 118 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~ 118 (282)
++|+||||++..
T Consensus 88 -----~~DvVIn~tp~~ 99 (467)
T 2axq_A 88 -----DNDVVISLIPYT 99 (467)
T ss_dssp -----TSSEEEECSCGG
T ss_pred -----CCCEEEECCchh
Confidence 689999999865
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=76.80 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=61.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+||++|||.++++.+...|++ |++++|++++.+.+.+ .+.. ..+|.++.+++.+.+.++...
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~--V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~~~~~~~~~~-- 237 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYR--VLGIDGGEGKEELFRS----IGGE---VFIDFTKEKDIVGAVLKATDG-- 237 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECSTTHHHHHHH----TTCC---EEEETTTCSCHHHHHHHHHTS--
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCc--EEEEcCCHHHHHHHHH----cCCc---eEEecCccHhHHHHHHHHhCC--
Confidence 5899999999999999999999999987 9999998876643332 2332 234888666677666665543
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|++|+|+|.
T Consensus 238 ~~D~vi~~~g~ 248 (347)
T 2hcy_A 238 GAHGVINVSVS 248 (347)
T ss_dssp CEEEEEECSSC
T ss_pred CCCEEEECCCc
Confidence 69999999985
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=7.4e-07 Score=67.45 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=56.9
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
+++++++|+|+ |.+|..+++.|.+.|.+ |++.+|+++..+.+.+ . ...++.+|.++.+.+.++ ..
T Consensus 4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~--v~~~d~~~~~~~~~~~----~--~~~~~~~d~~~~~~l~~~------~~ 68 (144)
T 2hmt_A 4 IKNKQFAVIGL-GRFGGSIVKELHRMGHE--VLAVDINEEKVNAYAS----Y--ATHAVIANATEENELLSL------GI 68 (144)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCC--CEEEESCHHHHHTTTT----T--CSEEEECCTTCHHHHHTT------TG
T ss_pred CcCCcEEEECC-CHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHH----h--CCEEEEeCCCCHHHHHhc------CC
Confidence 56788999998 99999999999999988 8888888765443221 1 235678899987655443 13
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
.+.|++|++++.
T Consensus 69 ~~~d~vi~~~~~ 80 (144)
T 2hmt_A 69 RNFEYVIVAIGA 80 (144)
T ss_dssp GGCSEEEECCCS
T ss_pred CCCCEEEECCCC
Confidence 468999999884
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.2e-07 Score=79.02 Aligned_cols=78 Identities=22% Similarity=0.135 Sum_probs=60.5
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.+++++++|+|+ |+||+++++.+...|++ |++.+|++++.+.+.+.. +.. +.+|.++.+++.+++.
T Consensus 163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~--V~~~d~~~~~~~~~~~~~---g~~---~~~~~~~~~~l~~~~~----- 228 (369)
T 2eez_A 163 GVAPASVVILGG-GTVGTNAAKIALGMGAQ--VTILDVNHKRLQYLDDVF---GGR---VITLTATEANIKKSVQ----- 228 (369)
T ss_dssp BBCCCEEEEECC-SHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHT---TTS---EEEEECCHHHHHHHHH-----
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCE--EEEEECCHHHHHHHHHhc---Cce---EEEecCCHHHHHHHHh-----
Confidence 588999999999 99999999999999987 999999887655433322 233 4578888877776654
Q ss_pred cCCccEEEECcccC
Q 023441 105 YGSLNLLINASGIL 118 (282)
Q Consensus 105 ~~~id~lv~~ag~~ 118 (282)
..|++|+|+|..
T Consensus 229 --~~DvVi~~~g~~ 240 (369)
T 2eez_A 229 --HADLLIGAVLVP 240 (369)
T ss_dssp --HCSEEEECCC--
T ss_pred --CCCEEEECCCCC
Confidence 589999999964
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-06 Score=75.58 Aligned_cols=85 Identities=15% Similarity=0.091 Sum_probs=61.2
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC---CCccccccccccc-CCCceeEEEeeCCChhHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN---PNGATGLLDLKNR-FPERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~---~~~~~~~~~~~~~-~~~~v~~~~~Dls~~~~~~~~~ 98 (282)
..+++||+++|+|+ ||+|++++..|++.|+. .|++++|+ .++++++.+.+.. .+ +.+...++.+.+++.+.+
T Consensus 149 ~~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~-~V~i~nR~~~~~~~a~~la~~~~~~~~--~~~~~~~~~~~~~l~~~l 224 (315)
T 3tnl_A 149 GHDIIGKKMTICGA-GGAATAICIQAALDGVK-EISIFNRKDDFYANAEKTVEKINSKTD--CKAQLFDIEDHEQLRKEI 224 (315)
T ss_dssp TCCCTTSEEEEECC-SHHHHHHHHHHHHTTCS-EEEEEECSSTTHHHHHHHHHHHHHHSS--CEEEEEETTCHHHHHHHH
T ss_pred CCCccCCEEEEECC-ChHHHHHHHHHHHCCCC-EEEEEECCCchHHHHHHHHHHhhhhcC--CceEEeccchHHHHHhhh
Confidence 35789999999997 79999999999999983 49999999 4444444333322 22 334456777766655444
Q ss_pred HHHHHHcCCccEEEECcccC
Q 023441 99 KSIKEKYGSLNLLINASGIL 118 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~ 118 (282)
. ..|+|||++...
T Consensus 225 ~-------~aDiIINaTp~G 237 (315)
T 3tnl_A 225 A-------ESVIFTNATGVG 237 (315)
T ss_dssp H-------TCSEEEECSSTT
T ss_pred c-------CCCEEEECccCC
Confidence 3 589999998765
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-09 Score=98.94 Aligned_cols=43 Identities=30% Similarity=0.363 Sum_probs=37.5
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA 67 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~ 67 (282)
..+++.||+++|||++ +||+++|+.|++.|++ |++.++++...
T Consensus 259 tg~~L~GKtVvVtGaG-gIG~aiA~~Laa~GA~--Viv~D~~~~~a 301 (488)
T 3ond_A 259 TDVMIAGKVAVVAGYG-DVGKGCAAALKQAGAR--VIVTEIDPICA 301 (488)
T ss_dssp HCCCCTTCEEEEECCS-HHHHHHHHHHHHTTCE--EEEECSCHHHH
T ss_pred cCCcccCCEEEEECCC-HHHHHHHHHHHHCCCE--EEEEcCCHHHH
Confidence 3456899999999987 9999999999999997 99999887554
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.22 E-value=7.1e-07 Score=75.65 Aligned_cols=78 Identities=23% Similarity=0.158 Sum_probs=56.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||+++|+|+ ||+|+++++.|++.|++ |++.+|+.++.+++.+.+...+ .+ |..+.+++. +
T Consensus 115 ~~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~--V~v~~R~~~~~~~la~~~~~~~-~~-----~~~~~~~~~-------~ 178 (271)
T 1nyt_A 115 FIRPGLRILLIGA-GGASRGVLLPLLSLDCA--VTITNRTVSRAEELAKLFAHTG-SI-----QALSMDELE-------G 178 (271)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSSHHHHHHHHHHTGGGS-SE-----EECCSGGGT-------T
T ss_pred cCcCCCEEEEECC-cHHHHHHHHHHHHcCCE--EEEEECCHHHHHHHHHHhhccC-Ce-----eEecHHHhc-------c
Confidence 4678999999998 79999999999999966 9999999877666554433211 22 233333221 1
Q ss_pred HcCCccEEEECcccCC
Q 023441 104 KYGSLNLLINASGILS 119 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~ 119 (282)
+++|++|+|++...
T Consensus 179 --~~~DivVn~t~~~~ 192 (271)
T 1nyt_A 179 --HEFDLIINATSSGI 192 (271)
T ss_dssp --CCCSEEEECCSCGG
T ss_pred --CCCCEEEECCCCCC
Confidence 58999999999763
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-06 Score=64.83 Aligned_cols=75 Identities=20% Similarity=0.218 Sum_probs=58.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++++++|+|+ |.+|.++++.|.++|.+ |++.+++++..+...+ ..+.++.+|.++++.++++ ...
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~--V~~id~~~~~~~~~~~------~~~~~~~gd~~~~~~l~~~------~~~ 69 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGKK--VLAVDKSKEKIELLED------EGFDAVIADPTDESFYRSL------DLE 69 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCC--EEEEESCHHHHHHHHH------TTCEEEECCTTCHHHHHHS------CCT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCe--EEEEECCHHHHHHHHH------CCCcEEECCCCCHHHHHhC------Ccc
Confidence 4578999998 77999999999999998 9999998876544332 1367889999998877654 224
Q ss_pred CccEEEECcc
Q 023441 107 SLNLLINASG 116 (282)
Q Consensus 107 ~id~lv~~ag 116 (282)
+.|.+|.+.+
T Consensus 70 ~~d~vi~~~~ 79 (141)
T 3llv_A 70 GVSAVLITGS 79 (141)
T ss_dssp TCSEEEECCS
T ss_pred cCCEEEEecC
Confidence 6899998887
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.2e-06 Score=74.72 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=58.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++||||++|||.++++.+...|++ |++++|++++.+.+.++ +.. ..+|.++.+..+++.+.. .. .
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~--Vi~~~~~~~~~~~~~~~----g~~---~~~d~~~~~~~~~i~~~~-~~-~ 213 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGAT--VIGTVSTEEKAETARKL----GCH---HTINYSTQDFAEVVREIT-GG-K 213 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHH-TT-C
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHc----CCC---EEEECCCHHHHHHHHHHh-CC-C
Confidence 5899999999999999999999999987 99999987665544332 322 235777765444443322 11 3
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|++|+|+|.
T Consensus 214 ~~d~vi~~~g~ 224 (333)
T 1wly_A 214 GVDVVYDSIGK 224 (333)
T ss_dssp CEEEEEECSCT
T ss_pred CCeEEEECCcH
Confidence 69999999985
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.8e-06 Score=74.98 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=57.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++|||||++|||.++++.+...|++ |++++|++++++.+.++ +.. ..+|.++.+..+++.+.... .
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~--V~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~--~ 208 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAK--LIGTVGTAQKAQSALKA----GAW---QVINYREEDLVERLKEITGG--K 208 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCE--EEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTTT--C
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHc----CCC---EEEECCCccHHHHHHHHhCC--C
Confidence 5899999999999999999999999987 99999987665544332 222 22577776554444332211 3
Q ss_pred CccEEEECcc
Q 023441 107 SLNLLINASG 116 (282)
Q Consensus 107 ~id~lv~~ag 116 (282)
++|++|+|+|
T Consensus 209 ~~D~vi~~~g 218 (327)
T 1qor_A 209 KVRVVYDSVG 218 (327)
T ss_dssp CEEEEEECSC
T ss_pred CceEEEECCc
Confidence 6999999999
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-06 Score=75.46 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=59.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+||+|+||.++++.+...|++ |++++|++++++.+.+. .+... .+|.++.+++.+.+.++.. +
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~--V~~~~~~~~~~~~~~~~---~g~~~---~~d~~~~~~~~~~~~~~~~--~ 224 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCY--VVGSAGSKEKVDLLKTK---FGFDD---AFNYKEESDLTAALKRCFP--N 224 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHT---SCCSE---EEETTSCSCSHHHHHHHCT--T
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHH---cCCce---EEecCCHHHHHHHHHHHhC--C
Confidence 5899999999999999999999989986 99999987765543322 23322 2477765555555554432 4
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|++|+|+|.
T Consensus 225 ~~d~vi~~~g~ 235 (345)
T 2j3h_A 225 GIDIYFENVGG 235 (345)
T ss_dssp CEEEEEESSCH
T ss_pred CCcEEEECCCH
Confidence 69999999984
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=5.2e-06 Score=72.95 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=56.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|+||+||||.++++.+...|++ |++++|++++.+.+. +.+.. ..+|.++.+..+++.+.. . ..
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~--Vi~~~~~~~~~~~~~----~~ga~---~~~d~~~~~~~~~~~~~~-~-~~ 238 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLK--ILGTAGTEEGQKIVL----QNGAH---EVFNHREVNYIDKIKKYV-G-EK 238 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHH----HTTCS---EEEETTSTTHHHHHHHHH-C-TT
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCE--EEEEeCChhHHHHHH----HcCCC---EEEeCCCchHHHHHHHHc-C-CC
Confidence 5899999999999999999999999987 999999877655332 22332 235777755443333221 1 12
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|++|+|+|.
T Consensus 239 ~~D~vi~~~G~ 249 (351)
T 1yb5_A 239 GIDIIIEMLAN 249 (351)
T ss_dssp CEEEEEESCHH
T ss_pred CcEEEEECCCh
Confidence 69999999984
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=3.9e-06 Score=73.79 Aligned_cols=80 Identities=11% Similarity=0.110 Sum_probs=56.6
Q ss_pred cC--cEEEEecCCCchhHHHHHHHHhcCC-CcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 27 KG--GVSLVQGASRGIGLEFAKQLLEKND-KGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 27 ~g--k~vlItGas~giG~a~a~~la~~G~-~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.| +++|||||+||||.++++.+...|+ + |+++++++++.+.+.+.+ +.. ..+|.++.+ +.+.+.+...
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~--Vi~~~~~~~~~~~~~~~~---g~~---~~~d~~~~~-~~~~~~~~~~ 228 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSR--VVGICGTHEKCILLTSEL---GFD---AAINYKKDN-VAEQLRESCP 228 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTCSE--EEEEESCHHHHHHHHHTS---CCS---EEEETTTSC-HHHHHHHHCT
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCCCe--EEEEeCCHHHHHHHHHHc---CCc---eEEecCchH-HHHHHHHhcC
Confidence 47 9999999999999999999999998 6 999999876655443322 332 235777643 3333333222
Q ss_pred HcCCccEEEECccc
Q 023441 104 KYGSLNLLINASGI 117 (282)
Q Consensus 104 ~~~~id~lv~~ag~ 117 (282)
+++|++|+|+|.
T Consensus 229 --~~~d~vi~~~G~ 240 (357)
T 2zb4_A 229 --AGVDVYFDNVGG 240 (357)
T ss_dssp --TCEEEEEESCCH
T ss_pred --CCCCEEEECCCH
Confidence 269999999984
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=4.5e-06 Score=73.36 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=57.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+||+||||.++++.+...|++ |++++|++++++.+.++ +.. ..+|.++.+..+++.+.. . .+
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~--Vi~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~-~-~~ 230 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAI--PLVTAGSQKKLQMAEKL----GAA---AGFNYKKEDFSEATLKFT-K-GA 230 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHT-T-TS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHc----CCc---EEEecCChHHHHHHHHHh-c-CC
Confidence 5899999999999999999999999987 99999987766544222 322 235777655444333221 1 13
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|++|+|+|.
T Consensus 231 ~~d~vi~~~G~ 241 (354)
T 2j8z_A 231 GVNLILDCIGG 241 (354)
T ss_dssp CEEEEEESSCG
T ss_pred CceEEEECCCc
Confidence 69999999985
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=98.01 E-value=4.8e-06 Score=70.87 Aligned_cols=83 Identities=22% Similarity=0.168 Sum_probs=59.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||+++|+|+ ||+|++++..|++.|+. .|++.+|+.++.+.+.+.+......+.+...++.+ +.+.+.
T Consensus 123 ~~l~~k~vlVlGa-GG~g~aia~~L~~~G~~-~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~---l~~~l~---- 193 (283)
T 3jyo_A 123 PNAKLDSVVQVGA-GGVGNAVAYALVTHGVQ-KLQVADLDTSRAQALADVINNAVGREAVVGVDARG---IEDVIA---- 193 (283)
T ss_dssp TTCCCSEEEEECC-SHHHHHHHHHHHHTTCS-EEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTT---HHHHHH----
T ss_pred cCcCCCEEEEECC-cHHHHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHH---HHHHHh----
Confidence 4688999999998 89999999999999984 49999999888776555443222223333444433 333333
Q ss_pred HcCCccEEEECcccC
Q 023441 104 KYGSLNLLINASGIL 118 (282)
Q Consensus 104 ~~~~id~lv~~ag~~ 118 (282)
..|+|||++...
T Consensus 194 ---~~DiVInaTp~G 205 (283)
T 3jyo_A 194 ---AADGVVNATPMG 205 (283)
T ss_dssp ---HSSEEEECSSTT
T ss_pred ---cCCEEEECCCCC
Confidence 479999999764
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=6e-06 Score=71.94 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=56.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+||+||||.++++.+...|++ |++++|++++.+.+.+. .+.. ...|.++.+..+.+.+ .. .+
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~--Vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~~~~-~~--~~ 217 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCR--VVGIAGGAEKCRFLVEE---LGFD---GAIDYKNEDLAAGLKR-EC--PK 217 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHT---TCCS---EEEETTTSCHHHHHHH-HC--TT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHH---cCCC---EEEECCCHHHHHHHHH-hc--CC
Confidence 5899999999999999999999899987 99999988766544222 2332 1247776543333332 22 24
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|++|+|+|.
T Consensus 218 ~~d~vi~~~g~ 228 (336)
T 4b7c_A 218 GIDVFFDNVGG 228 (336)
T ss_dssp CEEEEEESSCH
T ss_pred CceEEEECCCc
Confidence 69999999984
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=3.1e-05 Score=66.46 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=65.9
Q ss_pred ccccCcE-EEEecCC------------------CchhHHHHHHHHhcCCCcEEEEeecCCCccccc--------ccccc-
Q 023441 24 VKWKGGV-SLVQGAS------------------RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL--------LDLKN- 75 (282)
Q Consensus 24 ~~~~gk~-vlItGas------------------~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~--------~~~~~- 75 (282)
.++.||+ +|||+|. |..|.++|+.++++|+. |+++.+...-..-. .+.+.
T Consensus 32 ~~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~--V~lv~g~~sl~p~~r~~~~~~~~~~~~~ 109 (313)
T 1p9o_A 32 LGAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYG--VLFLYRARSAFPYAHRFPPQTWLSALRP 109 (313)
T ss_dssp HHHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCE--EEEEEETTSCCTTGGGSCHHHHHHHCEE
T ss_pred hhhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCE--EEEEecCCCcCcchhccCccchhhhhcc
Confidence 3678988 9999764 44999999999999998 88888854321100 01000
Q ss_pred --cCCCceeEEEeeCCChhHHHHHHHHH------------------------------HHHcCCccEEEECcccCC
Q 023441 76 --RFPERLDVLQLDLTVESTIEASAKSI------------------------------KEKYGSLNLLINASGILS 119 (282)
Q Consensus 76 --~~~~~v~~~~~Dls~~~~~~~~~~~~------------------------------~~~~~~id~lv~~ag~~~ 119 (282)
..+..+..+.+|+...+++.+++... .+.+++.|++|.+|++..
T Consensus 110 ~~~~~~~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVsD 185 (313)
T 1p9o_A 110 SGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSD 185 (313)
T ss_dssp CCC-CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCCS
T ss_pred ccccccccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchhh
Confidence 11234567788888888887777654 245678999999999974
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-05 Score=70.17 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=56.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.|+++||+|++++||.++++.+... |++ |++.++++++++.+.++ +... .+|.++.+..++ +.++...
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~--Vi~~~~~~~~~~~~~~~----g~~~---~~~~~~~~~~~~-~~~~~~~- 238 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGAT--IIGVDVREEAVEAAKRA----GADY---VINASMQDPLAE-IRRITES- 238 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCE--EEEEESSHHHHHHHHHH----TCSE---EEETTTSCHHHH-HHHHTTT-
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCe--EEEEcCCHHHHHHHHHh----CCCE---EecCCCccHHHH-HHHHhcC-
Confidence 5899999999999999999999888 987 99999987766544322 3222 246766543332 2222211
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+++|++|+|+|.
T Consensus 239 ~~~d~vi~~~g~ 250 (347)
T 1jvb_A 239 KGVDAVIDLNNS 250 (347)
T ss_dssp SCEEEEEESCCC
T ss_pred CCceEEEECCCC
Confidence 479999999985
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=2.2e-05 Score=67.58 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=58.6
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC---CCcccccccccc-cCCCceeEEEeeCCChhHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN---PNGATGLLDLKN-RFPERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~---~~~~~~~~~~~~-~~~~~v~~~~~Dls~~~~~~~~~ 98 (282)
..+++||+++|+|+ ||.|++++..|++.|+. .|++..|+ .++++++.+.+. ..+ ......++.+.+.+.+.+
T Consensus 143 ~~~l~gk~~lVlGA-GGaaraia~~L~~~G~~-~v~v~nRt~~~~~~a~~la~~~~~~~~--~~v~~~~~~~l~~~~~~l 218 (312)
T 3t4e_A 143 GFDMRGKTMVLLGA-GGAATAIGAQAAIEGIK-EIKLFNRKDDFFEKAVAFAKRVNENTD--CVVTVTDLADQHAFTEAL 218 (312)
T ss_dssp TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEEECSSTHHHHHHHHHHHHHHHSS--CEEEEEETTCHHHHHHHH
T ss_pred CCCcCCCEEEEECc-CHHHHHHHHHHHHcCCC-EEEEEECCCchHHHHHHHHHHhhhccC--cceEEechHhhhhhHhhc
Confidence 35788999999997 89999999999999984 49999999 444444433332 222 233445666643333332
Q ss_pred HHHHHHcCCccEEEECcccC
Q 023441 99 KSIKEKYGSLNLLINASGIL 118 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~~ 118 (282)
. ..|+|||+....
T Consensus 219 ~-------~~DiIINaTp~G 231 (312)
T 3t4e_A 219 A-------SADILTNGTKVG 231 (312)
T ss_dssp H-------HCSEEEECSSTT
T ss_pred c-------CceEEEECCcCC
Confidence 2 479999998765
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.81 E-value=2.9e-05 Score=68.16 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=57.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+||+|++|.++++.+...|++ |+++++++++++.+.++ +... ..|.++.+..+++. +.. .+
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~--Vi~~~~~~~~~~~~~~l----Ga~~---~~~~~~~~~~~~~~-~~~--~~ 234 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAE--VYATAGSTGKCEACERL----GAKR---GINYRSEDFAAVIK-AET--GQ 234 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHH----TCSE---EEETTTSCHHHHHH-HHH--SS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHhc----CCCE---EEeCCchHHHHHHH-HHh--CC
Confidence 5899999999999999999999999987 99999988776544332 3322 24666654333333 332 34
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|++|+|+|.
T Consensus 235 g~Dvvid~~g~ 245 (353)
T 4dup_A 235 GVDIILDMIGA 245 (353)
T ss_dssp CEEEEEESCCG
T ss_pred CceEEEECCCH
Confidence 79999999985
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=5.1e-05 Score=58.37 Aligned_cols=79 Identities=13% Similarity=0.034 Sum_probs=57.3
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+..+++++|+|+ |.+|..+++.|.+.|.+ |++++|+++..+.+.+ . ..+.++..|.++.+.+.++ .
T Consensus 16 ~~~~~~v~IiG~-G~iG~~la~~L~~~g~~--V~vid~~~~~~~~~~~---~--~g~~~~~~d~~~~~~l~~~------~ 81 (155)
T 2g1u_A 16 KQKSKYIVIFGC-GRLGSLIANLASSSGHS--VVVVDKNEYAFHRLNS---E--FSGFTVVGDAAEFETLKEC------G 81 (155)
T ss_dssp -CCCCEEEEECC-SHHHHHHHHHHHHTTCE--EEEEESCGGGGGGSCT---T--CCSEEEESCTTSHHHHHTT------T
T ss_pred ccCCCcEEEECC-CHHHHHHHHHHHhCCCe--EEEEECCHHHHHHHHh---c--CCCcEEEecCCCHHHHHHc------C
Confidence 346789999996 99999999999999987 9999998876554321 1 1345677888876544322 1
Q ss_pred cCCccEEEECccc
Q 023441 105 YGSLNLLINASGI 117 (282)
Q Consensus 105 ~~~id~lv~~ag~ 117 (282)
....|++|.+.+.
T Consensus 82 ~~~ad~Vi~~~~~ 94 (155)
T 2g1u_A 82 MEKADMVFAFTND 94 (155)
T ss_dssp GGGCSEEEECSSC
T ss_pred cccCCEEEEEeCC
Confidence 2368999999874
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=1e-05 Score=68.50 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=55.4
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||+++|+|+ ||+|++++..|++.|.+ |++.+|+.++.+++.+.....+ .+. .+|+ +++. +
T Consensus 115 ~~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~--v~v~~R~~~~a~~l~~~~~~~~-~~~--~~~~---~~~~-------~ 178 (272)
T 1p77_A 115 WLRPNQHVLILGA-GGATKGVLLPLLQAQQN--IVLANRTFSKTKELAERFQPYG-NIQ--AVSM---DSIP-------L 178 (272)
T ss_dssp CCCTTCEEEEECC-SHHHHTTHHHHHHTTCE--EEEEESSHHHHHHHHHHHGGGS-CEE--EEEG---GGCC-------C
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHccccC-CeE--EeeH---HHhc-------c
Confidence 4678999999998 79999999999999965 9999999887766554443221 222 2333 1111 1
Q ss_pred HcCCccEEEECcccCC
Q 023441 104 KYGSLNLLINASGILS 119 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~ 119 (282)
+..|++|+|++...
T Consensus 179 --~~~DivIn~t~~~~ 192 (272)
T 1p77_A 179 --QTYDLVINATSAGL 192 (272)
T ss_dssp --SCCSEEEECCCC--
T ss_pred --CCCCEEEECCCCCC
Confidence 47999999999764
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.77 E-value=5.9e-05 Score=65.58 Aligned_cols=155 Identities=10% Similarity=-0.015 Sum_probs=93.5
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCC-----cEEEEeecC----CCcccc-cccccccCCCceeEEEeeCCChhHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDK-----GCVIATCRN----PNGATG-LLDLKNRFPERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~-----~~vi~~~r~----~~~~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~ 97 (282)
..+++||||+|.+|..++..|+..|.. ..|.+.+++ +++.+. ..++... ...+ ..|+....+..++
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~-~~~~---~~~i~~~~~~~~a 80 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDC-AFPL---LAGMTAHADPMTA 80 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTT-TCTT---EEEEEEESSHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhh-cccc---cCcEEEecCcHHH
Confidence 357999999999999999999998851 138888887 433332 2222211 0111 1355444444443
Q ss_pred HHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 98 AKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
++ ..|++||++|.... .+ ..-.+.+..|+.....+++.+..+-.. . ..++++
T Consensus 81 l~-------~aD~Vi~~ag~~~~------~g-------~~r~dl~~~N~~i~~~i~~~i~~~~~p--~------a~ii~~ 132 (329)
T 1b8p_A 81 FK-------DADVALLVGARPRG------PG-------MERKDLLEANAQIFTVQGKAIDAVASR--N------IKVLVV 132 (329)
T ss_dssp TT-------TCSEEEECCCCCCC------TT-------CCHHHHHHHHHHHHHHHHHHHHHHSCT--T------CEEEEC
T ss_pred hC-------CCCEEEEeCCCCCC------CC-------CCHHHHHHHHHHHHHHHHHHHHHhcCC--C------eEEEEc
Confidence 33 68999999997531 11 112346788888888888887665211 1 278888
Q ss_pred ecccccc------CCCCCCCcccchhhHHHHHHHHHHHHHHhc
Q 023441 178 SARVGSI------GDNRLGGWHSYRASKAALNQLTKSVSVEFG 214 (282)
Q Consensus 178 ss~~~~~------~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~ 214 (282)
|...... ..+.++....|+.++.--.-+...++..+.
T Consensus 133 SNPv~~~t~~~~~~~~~~p~~~v~g~t~Ld~~r~~~~la~~lg 175 (329)
T 1b8p_A 133 GNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTG 175 (329)
T ss_dssp SSSHHHHHHHHHHTCTTSCGGGEEECCHHHHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHHHcCCCCHHHEEEeecHHHHHHHHHHHHHhC
Confidence 8754221 111234445688876544556666777764
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.76 E-value=3.8e-05 Score=66.97 Aligned_cols=80 Identities=24% Similarity=0.240 Sum_probs=56.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+||++++|.+.++.+...|++ |+++++++++.+.+.++ +... ..|.++.+..+++.+ ... ..
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~--Vi~~~~~~~~~~~~~~l----ga~~---~~~~~~~~~~~~~~~-~~~-~~ 212 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFR--LIAVTRNNKHTEELLRL----GAAY---VIDTSTAPLYETVME-LTN-GI 212 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCE--EEEEESSSTTHHHHHHH----TCSE---EEETTTSCHHHHHHH-HTT-TS
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHhC----CCcE---EEeCCcccHHHHHHH-HhC-CC
Confidence 5899999999999999999888889987 99999998877654432 3332 236665443333222 211 12
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|++|+|+|.
T Consensus 213 g~Dvvid~~g~ 223 (340)
T 3gms_A 213 GADAAIDSIGG 223 (340)
T ss_dssp CEEEEEESSCH
T ss_pred CCcEEEECCCC
Confidence 69999999996
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.76 E-value=3.1e-05 Score=67.68 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=56.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+|+++++|.++++.+...|++ |+.+++++++.+.+.++ +... .+|.++.+ +.+.+.+... ..
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~--Vi~~~~~~~~~~~~~~~----ga~~---~~d~~~~~-~~~~~~~~~~-~~ 234 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGAR--VIATAGSEDKLRRAKAL----GADE---TVNYTHPD-WPKEVRRLTG-GK 234 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHH----TCSE---EEETTSTT-HHHHHHHHTT-TT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHhc----CCCE---EEcCCccc-HHHHHHHHhC-CC
Confidence 5899999999999999999999999987 99999987766544322 3221 25777654 3222322221 13
Q ss_pred CccEEEECcc
Q 023441 107 SLNLLINASG 116 (282)
Q Consensus 107 ~id~lv~~ag 116 (282)
++|++|+|+|
T Consensus 235 ~~d~vi~~~g 244 (343)
T 2eih_A 235 GADKVVDHTG 244 (343)
T ss_dssp CEEEEEESSC
T ss_pred CceEEEECCC
Confidence 6999999999
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.76 E-value=5e-05 Score=58.27 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=58.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC-CcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~-~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
..++++|.|+ |.+|..+++.|.+.|.+ |++++++. +..+.+.+.. ...+.++..|.++++.++++ ..
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~--V~vid~~~~~~~~~~~~~~---~~~~~~i~gd~~~~~~l~~a------~i 69 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQRGQN--VTVISNLPEDDIKQLEQRL---GDNADVIPGDSNDSSVLKKA------GI 69 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHH---CTTCEEEESCTTSHHHHHHH------TT
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCC--EEEEECCChHHHHHHHHhh---cCCCeEEEcCCCCHHHHHHc------Ch
Confidence 3577899986 99999999999999988 89999974 3332232222 23578899999998876554 12
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
.+.|.+|.+.+.
T Consensus 70 ~~ad~vi~~~~~ 81 (153)
T 1id1_A 70 DRCRAILALSDN 81 (153)
T ss_dssp TTCSEEEECSSC
T ss_pred hhCCEEEEecCC
Confidence 368999988874
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=97.74 E-value=2.5e-05 Score=70.82 Aligned_cols=85 Identities=21% Similarity=0.250 Sum_probs=58.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEe--eCC---------ChhHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL--DLT---------VESTIE 95 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~--Dls---------~~~~~~ 95 (282)
.|+++||+||+|+||.+.++.+...|++ |+++++++++++.+. +.+....+-.. |+. +.+++.
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~--vi~~~~~~~~~~~~~----~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~ 293 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGI--PVAVVSSAQKEAAVR----ALGCDLVINRAELGITDDIADDPRRVVETGR 293 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHH----HTTCCCEEEHHHHTCCTTGGGCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHH----hcCCCEEEecccccccccccccccccchhhh
Confidence 5899999999999999999888889987 888888776655432 23443322221 221 123445
Q ss_pred HHHHHHHHHcC-CccEEEECccc
Q 023441 96 ASAKSIKEKYG-SLNLLINASGI 117 (282)
Q Consensus 96 ~~~~~~~~~~~-~id~lv~~ag~ 117 (282)
++.+.+.+..+ .+|++|+|+|.
T Consensus 294 ~~~~~v~~~~g~g~Dvvid~~G~ 316 (447)
T 4a0s_A 294 KLAKLVVEKAGREPDIVFEHTGR 316 (447)
T ss_dssp HHHHHHHHHHSSCCSEEEECSCH
T ss_pred HHHHHHHHHhCCCceEEEECCCc
Confidence 55666666554 59999999985
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.69 E-value=7.7e-05 Score=55.79 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=55.1
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
+++++|+|+ |.+|..+++.|.+.|.+ |++.+|+++..+.+.+. . .+.++..|.++.+.+.+. ...+
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~--v~~~d~~~~~~~~~~~~---~--~~~~~~~d~~~~~~l~~~------~~~~ 69 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHD--IVLIDIDKDICKKASAE---I--DALVINGDCTKIKTLEDA------GIED 69 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHH---C--SSEEEESCTTSHHHHHHT------TTTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe--EEEEECCHHHHHHHHHh---c--CcEEEEcCCCCHHHHHHc------Cccc
Confidence 457899987 99999999999999977 88889987654433221 1 355678899887665431 2346
Q ss_pred ccEEEECccc
Q 023441 108 LNLLINASGI 117 (282)
Q Consensus 108 id~lv~~ag~ 117 (282)
.|++|++++.
T Consensus 70 ~d~vi~~~~~ 79 (140)
T 1lss_A 70 ADMYIAVTGK 79 (140)
T ss_dssp CSEEEECCSC
T ss_pred CCEEEEeeCC
Confidence 8999999753
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=3.7e-05 Score=66.89 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=55.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+||+|++|.+.++.+...|++ |+.+++++++++.+.+ .+... ..|.++.+..+++.+ ... ..
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~--Vi~~~~~~~~~~~~~~----~ga~~---~~~~~~~~~~~~~~~-~~~-~~ 216 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAH--TIAVASTDEKLKIAKE----YGAEY---LINASKEDILRQVLK-FTN-GK 216 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHH----TTCSE---EEETTTSCHHHHHHH-HTT-TS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHH----cCCcE---EEeCCCchHHHHHHH-HhC-CC
Confidence 5899999999999999999988889987 9999998776553322 23332 246665443333322 211 13
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|++++|+|.
T Consensus 217 g~D~vid~~g~ 227 (334)
T 3qwb_A 217 GVDASFDSVGK 227 (334)
T ss_dssp CEEEEEECCGG
T ss_pred CceEEEECCCh
Confidence 59999999995
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=3.8e-05 Score=66.55 Aligned_cols=80 Identities=18% Similarity=0.193 Sum_probs=56.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+||+|++|.+.++.+...|++ |+++++++++++.+.++ +... ..|.++.+..+++.+.. . ..
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~--Vi~~~~~~~~~~~~~~~----Ga~~---~~~~~~~~~~~~~~~~~-~-~~ 208 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAK--LIGTVSSPEKAAHAKAL----GAWE---TIDYSHEDVAKRVLELT-D-GK 208 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCE--EEEEESSHHHHHHHHHH----TCSE---EEETTTSCHHHHHHHHT-T-TC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHc----CCCE---EEeCCCccHHHHHHHHh-C-CC
Confidence 5899999999999999999888889987 99999988766544332 3222 24666544333332221 1 12
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|++++|+|.
T Consensus 209 g~Dvvid~~g~ 219 (325)
T 3jyn_A 209 KCPVVYDGVGQ 219 (325)
T ss_dssp CEEEEEESSCG
T ss_pred CceEEEECCCh
Confidence 69999999985
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.65 E-value=8.6e-05 Score=64.81 Aligned_cols=79 Identities=20% Similarity=0.267 Sum_probs=54.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+||+|++|.+.++.+...|++ |++++++.++.+.+.++ +... + .|.. +++.+.+.+.... .
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~--Vi~~~~~~~~~~~~~~~----ga~~-v--~~~~--~~~~~~v~~~~~~-~ 226 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAK--VIAVVNRTAATEFVKSV----GADI-V--LPLE--EGWAKAVREATGG-A 226 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCE--EEEEESSGGGHHHHHHH----TCSE-E--EESS--TTHHHHHHHHTTT-S
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHhc----CCcE-E--ecCc--hhHHHHHHHHhCC-C
Confidence 5899999999999999999988889987 99999988776544332 3322 2 2444 2333333322211 2
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|++++|+|.
T Consensus 227 g~Dvvid~~g~ 237 (342)
T 4eye_A 227 GVDMVVDPIGG 237 (342)
T ss_dssp CEEEEEESCC-
T ss_pred CceEEEECCch
Confidence 59999999995
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.65 E-value=2.9e-05 Score=66.53 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=55.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||+++|+|+ ||+|++++..|++.|+. .|++.+|+.++.+.+.+....... .. .+.++ +.+
T Consensus 137 ~~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~-~V~v~nR~~~ka~~la~~~~~~~~--~~-----~~~~~-------~~~ 200 (297)
T 2egg_A 137 ITLDGKRILVIGA-GGGARGIYFSLLSTAAE-RIDMANRTVEKAERLVREGDERRS--AY-----FSLAE-------AET 200 (297)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTTTCS-EEEEECSSHHHHHHHHHHSCSSSC--CE-----ECHHH-------HHH
T ss_pred CCCCCCEEEEECc-HHHHHHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHhhhccC--ce-----eeHHH-------HHh
Confidence 4678999999998 79999999999999973 499999998776655444321110 11 12222 222
Q ss_pred HcCCccEEEECcccCC
Q 023441 104 KYGSLNLLINASGILS 119 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~ 119 (282)
.....|+||++++...
T Consensus 201 ~~~~aDivIn~t~~~~ 216 (297)
T 2egg_A 201 RLAEYDIIINTTSVGM 216 (297)
T ss_dssp TGGGCSEEEECSCTTC
T ss_pred hhccCCEEEECCCCCC
Confidence 3346899999998763
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=4.6e-05 Score=67.20 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=52.5
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC---CcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP---NGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~---~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
++|+++||+|+ |++|..+++.+...|++ |++++++. ++.+.+.+ .+. ..+ | ++ ++.+.+.+ .
T Consensus 179 ~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~--Vi~~~~~~~~~~~~~~~~~----~ga--~~v--~-~~--~~~~~~~~-~ 243 (366)
T 2cdc_A 179 LNCRKVLVVGT-GPIGVLFTLLFRTYGLE--VWMANRREPTEVEQTVIEE----TKT--NYY--N-SS--NGYDKLKD-S 243 (366)
T ss_dssp STTCEEEEESC-HHHHHHHHHHHHHHTCE--EEEEESSCCCHHHHHHHHH----HTC--EEE--E-CT--TCSHHHHH-H
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCE--EEEEeCCccchHHHHHHHH----hCC--cee--c-hH--HHHHHHHH-h
Confidence 44999999999 99999999888889986 99999987 55432222 232 333 6 54 22222222 2
Q ss_pred HHcCCccEEEECcccC
Q 023441 103 EKYGSLNLLINASGIL 118 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~ 118 (282)
. +++|++|+|+|..
T Consensus 244 -~-~~~d~vid~~g~~ 257 (366)
T 2cdc_A 244 -V-GKFDVIIDATGAD 257 (366)
T ss_dssp -H-CCEEEEEECCCCC
T ss_pred -C-CCCCEEEECCCCh
Confidence 2 5799999999963
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00024 Score=62.15 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=54.9
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
+++++|+||+|++|.+.++.+...|++ |+++++++++++.+.++ +... ..|..+.+ +.+.+.+.... .+
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga~--Vi~~~~~~~~~~~~~~~----Ga~~---~~~~~~~~-~~~~v~~~~~~-~g 233 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGFR--PIVTVRRDEQIALLKDI----GAAH---VLNEKAPD-FEATLREVMKA-EQ 233 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTCE--EEEEESCGGGHHHHHHH----TCSE---EEETTSTT-HHHHHHHHHHH-HC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHc----CCCE---EEECCcHH-HHHHHHHHhcC-CC
Confidence 389999999999999999888888987 99999988776544332 3322 23555544 33333332221 26
Q ss_pred ccEEEECccc
Q 023441 108 LNLLINASGI 117 (282)
Q Consensus 108 id~lv~~ag~ 117 (282)
+|+++.|+|.
T Consensus 234 ~D~vid~~g~ 243 (349)
T 3pi7_A 234 PRIFLDAVTG 243 (349)
T ss_dssp CCEEEESSCH
T ss_pred CcEEEECCCC
Confidence 9999999985
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.53 E-value=5.9e-05 Score=59.59 Aligned_cols=82 Identities=16% Similarity=0.048 Sum_probs=59.8
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
.+.++.+++++|.|+ |.+|..+++.|.+. |.+ |+++++++++.+.+.+ . .+.++..|.++.+.+.++
T Consensus 33 ~~~~~~~~~v~IiG~-G~~G~~~a~~L~~~~g~~--V~vid~~~~~~~~~~~----~--g~~~~~gd~~~~~~l~~~--- 100 (183)
T 3c85_A 33 QLINPGHAQVLILGM-GRIGTGAYDELRARYGKI--SLGIEIREEAAQQHRS----E--GRNVISGDATDPDFWERI--- 100 (183)
T ss_dssp CCBCCTTCSEEEECC-SHHHHHHHHHHHHHHCSC--EEEEESCHHHHHHHHH----T--TCCEEECCTTCHHHHHTB---
T ss_pred cCcCCCCCcEEEECC-CHHHHHHHHHHHhccCCe--EEEEECCHHHHHHHHH----C--CCCEEEcCCCCHHHHHhc---
Confidence 334567888999984 99999999999999 988 9999998866543322 1 356677899987655432
Q ss_pred HHHHcCCccEEEECccc
Q 023441 101 IKEKYGSLNLLINASGI 117 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~ 117 (282)
....+.|.+|.+.+.
T Consensus 101 --~~~~~ad~vi~~~~~ 115 (183)
T 3c85_A 101 --LDTGHVKLVLLAMPH 115 (183)
T ss_dssp --CSCCCCCEEEECCSS
T ss_pred --cCCCCCCEEEEeCCC
Confidence 012468999988763
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0001 Score=62.52 Aligned_cols=77 Identities=23% Similarity=0.294 Sum_probs=56.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||+++|+|+ ||+|++++..|++.|+. .|++..|+.++.+++.+.....+ .+... ++.+..
T Consensus 122 ~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~-~v~v~~R~~~~a~~la~~~~~~~-~~~~~--~~~~l~----------- 185 (281)
T 3o8q_A 122 VLLKGATILLIGA-GGAARGVLKPLLDQQPA-SITVTNRTFAKAEQLAELVAAYG-EVKAQ--AFEQLK----------- 185 (281)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTTCCS-EEEEEESSHHHHHHHHHHHGGGS-CEEEE--EGGGCC-----------
T ss_pred CCccCCEEEEECc-hHHHHHHHHHHHhcCCC-eEEEEECCHHHHHHHHHHhhccC-CeeEe--eHHHhc-----------
Confidence 5678999999998 79999999999999973 49999999888776555443322 23333 222211
Q ss_pred HcCCccEEEECcccC
Q 023441 104 KYGSLNLLINASGIL 118 (282)
Q Consensus 104 ~~~~id~lv~~ag~~ 118 (282)
...|+||++....
T Consensus 186 --~~aDiIInaTp~g 198 (281)
T 3o8q_A 186 --QSYDVIINSTSAS 198 (281)
T ss_dssp --SCEEEEEECSCCC
T ss_pred --CCCCEEEEcCcCC
Confidence 3689999999765
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.53 E-value=9.7e-05 Score=62.40 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=56.5
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..+++||+++|+|+ ||+|++++..|++.|+. .|++.+|+.++.+++.+.... ..+..+ ++.+..
T Consensus 115 ~~~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~-~v~i~~R~~~~a~~la~~~~~--~~~~~~--~~~~l~---------- 178 (272)
T 3pwz_A 115 GEPLRNRRVLLLGA-GGAVRGALLPFLQAGPS-ELVIANRDMAKALALRNELDH--SRLRIS--RYEALE---------- 178 (272)
T ss_dssp CCCCTTSEEEEECC-SHHHHHHHHHHHHTCCS-EEEEECSCHHHHHHHHHHHCC--TTEEEE--CSGGGT----------
T ss_pred CCCccCCEEEEECc-cHHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHhcc--CCeeEe--eHHHhc----------
Confidence 35688999999998 79999999999999963 499999998887766555433 233332 222211
Q ss_pred HHcCCccEEEECcccC
Q 023441 103 EKYGSLNLLINASGIL 118 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~ 118 (282)
. ...|+|||+....
T Consensus 179 ~--~~~DivInaTp~g 192 (272)
T 3pwz_A 179 G--QSFDIVVNATSAS 192 (272)
T ss_dssp T--CCCSEEEECSSGG
T ss_pred c--cCCCEEEECCCCC
Confidence 0 3689999998764
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=97.52 E-value=9.9e-05 Score=67.05 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=59.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEE--ee--------CCChhHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQ--LD--------LTVESTIEA 96 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~--~D--------ls~~~~~~~ 96 (282)
.|+++||+||+|++|...++.+...|++ |+++++++++++.+.+ .+....+-. .| .++.+++++
T Consensus 228 ~g~~VlV~GasG~vG~~avqlak~~Ga~--vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~ 301 (456)
T 3krt_A 228 QGDNVLIWGASGGLGSYATQFALAGGAN--PICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPKEWKR 301 (456)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCe--EEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchHHHHH
Confidence 5899999999999999999888888987 8888887766554332 233221111 11 234566667
Q ss_pred HHHHHHHHcC--CccEEEECccc
Q 023441 97 SAKSIKEKYG--SLNLLINASGI 117 (282)
Q Consensus 97 ~~~~~~~~~~--~id~lv~~ag~ 117 (282)
+.+.+++..+ .+|+++.++|.
T Consensus 302 ~~~~i~~~t~g~g~Dvvid~~G~ 324 (456)
T 3krt_A 302 FGKRIRELTGGEDIDIVFEHPGR 324 (456)
T ss_dssp HHHHHHHHHTSCCEEEEEECSCH
T ss_pred HHHHHHHHhCCCCCcEEEEcCCc
Confidence 7777776553 69999999985
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00012 Score=64.48 Aligned_cols=73 Identities=22% Similarity=0.141 Sum_probs=57.1
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
..+|+|.|| |.+|+.+++.|++. .+ |.+.+++.+.++++. ..+..+.+|++|.+++.+++. +
T Consensus 16 ~mkilvlGa-G~vG~~~~~~L~~~-~~--v~~~~~~~~~~~~~~-------~~~~~~~~d~~d~~~l~~~~~-------~ 77 (365)
T 3abi_A 16 HMKVLILGA-GNIGRAIAWDLKDE-FD--VYIGDVNNENLEKVK-------EFATPLKVDASNFDKLVEVMK-------E 77 (365)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTTT-SE--EEEEESCHHHHHHHT-------TTSEEEECCTTCHHHHHHHHT-------T
T ss_pred ccEEEEECC-CHHHHHHHHHHhcC-CC--eEEEEcCHHHHHHHh-------ccCCcEEEecCCHHHHHHHHh-------C
Confidence 347999998 99999999998764 44 888999877665433 245668899999998887765 5
Q ss_pred ccEEEECcccC
Q 023441 108 LNLLINASGIL 118 (282)
Q Consensus 108 id~lv~~ag~~ 118 (282)
.|++|++++..
T Consensus 78 ~DvVi~~~p~~ 88 (365)
T 3abi_A 78 FELVIGALPGF 88 (365)
T ss_dssp CSEEEECCCGG
T ss_pred CCEEEEecCCc
Confidence 79999998753
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00028 Score=61.24 Aligned_cols=119 Identities=16% Similarity=0.082 Sum_probs=73.0
Q ss_pred cEEEEecCCCchhHHHHHHHHhcC--CCcEEEEeecCCCcccccccccccC-CCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKN--DKGCVIATCRNPNGATGLLDLKNRF-PERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G--~~~~vi~~~r~~~~~~~~~~~~~~~-~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.+++||||+|.+|..++..|+.+| .+ |++.+++++ .....++.... ..++.. +++..++.++++
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~e--v~l~Di~~~-~~~~~dL~~~~~~~~v~~----~~~t~d~~~al~------ 75 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSV--LHLYDVVNA-PGVTADISHMDTGAVVRG----FLGQQQLEAALT------ 75 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEE--EEEEESSSH-HHHHHHHHTSCSSCEEEE----EESHHHHHHHHT------
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCE--EEEEeCCCc-HhHHHHhhcccccceEEE----EeCCCCHHHHcC------
Confidence 479999999999999999999988 44 888887765 21222222111 112221 223344444433
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
..|++|+++|.... .. ....+.+.+|+..+..+.+.+...-. . +.++++|...+.
T Consensus 76 -gaDvVi~~ag~~~~------~g-------~~r~dl~~~N~~~~~~i~~~i~~~~p---~------~~viv~SNPv~~ 130 (326)
T 1smk_A 76 -GMDLIIVPAGVPRK------PG-------MTRDDLFKINAGIVKTLCEGIAKCCP---R------AIVNLISNPVNS 130 (326)
T ss_dssp -TCSEEEECCCCCCC------SS-------CCCSHHHHHHHHHHHHHHHHHHHHCT---T------SEEEECCSSHHH
T ss_pred -CCCEEEEcCCcCCC------CC-------CCHHHHHHHHHHHHHHHHHHHHhhCC---C------eEEEEECCchHH
Confidence 68999999997531 11 01124578888888888887765431 1 266666655444
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0002 Score=54.07 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=57.6
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++++|.|+ |.+|..+++.|.+.|.+ |++++++++..+.+.+ ..+.++..|.++++.++++ ...+.
T Consensus 8 ~~viIiG~-G~~G~~la~~L~~~g~~--v~vid~~~~~~~~~~~------~g~~~i~gd~~~~~~l~~a------~i~~a 72 (140)
T 3fwz_A 8 NHALLVGY-GRVGSLLGEKLLASDIP--LVVIETSRTRVDELRE------RGVRAVLGNAANEEIMQLA------HLECA 72 (140)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCC--EEEEESCHHHHHHHHH------TTCEEEESCTTSHHHHHHT------TGGGC
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCCC--EEEEECCHHHHHHHHH------cCCCEEECCCCCHHHHHhc------CcccC
Confidence 57788887 88999999999999998 9999999877654332 2567789999998876653 12368
Q ss_pred cEEEECccc
Q 023441 109 NLLINASGI 117 (282)
Q Consensus 109 d~lv~~ag~ 117 (282)
|.+|.+.+.
T Consensus 73 d~vi~~~~~ 81 (140)
T 3fwz_A 73 KWLILTIPN 81 (140)
T ss_dssp SEEEECCSC
T ss_pred CEEEEECCC
Confidence 999888774
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00014 Score=61.46 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=51.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCC-CcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKND-KGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~-~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+++||+++|+|+ ||.|++++..|++.|+ + |++..|+.++.+++.+. +... ..+++.+
T Consensus 113 ~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~--v~v~~R~~~~a~~la~~-------~~~~-----~~~~~~~------ 171 (277)
T 3don_A 113 EGIEDAYILILGA-GGASKGIANELYKIVRPT--LTVANRTMSRFNNWSLN-------INKI-----NLSHAES------ 171 (277)
T ss_dssp TTGGGCCEEEECC-SHHHHHHHHHHHTTCCSC--CEEECSCGGGGTTCCSC-------CEEE-----CHHHHHH------
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHCCCCE--EEEEeCCHHHHHHHHHh-------cccc-----cHhhHHH------
Confidence 4678999999997 7999999999999998 6 89999998876654321 1111 1222222
Q ss_pred HHcCCccEEEECcccC
Q 023441 103 EKYGSLNLLINASGIL 118 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~ 118 (282)
.....|+||++....
T Consensus 172 -~~~~aDiVInaTp~G 186 (277)
T 3don_A 172 -HLDEFDIIINTTPAG 186 (277)
T ss_dssp -TGGGCSEEEECCC--
T ss_pred -HhcCCCEEEECccCC
Confidence 123589999998764
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00017 Score=63.52 Aligned_cols=78 Identities=24% Similarity=0.195 Sum_probs=56.0
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.+++++++|+|+ |++|+++++.+...|++ |++.+|+.++++.+.+... ..+. ++..+.+++.+.+.
T Consensus 164 ~l~~~~VlViGa-GgvG~~aa~~a~~~Ga~--V~v~dr~~~r~~~~~~~~~---~~~~---~~~~~~~~~~~~~~----- 229 (361)
T 1pjc_A 164 GVKPGKVVILGG-GVVGTEAAKMAVGLGAQ--VQIFDINVERLSYLETLFG---SRVE---LLYSNSAEIETAVA----- 229 (361)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHG---GGSE---EEECCHHHHHHHHH-----
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCE--EEEEeCCHHHHHHHHHhhC---ceeE---eeeCCHHHHHHHHc-----
Confidence 467899999999 99999999999999986 9999999877665443321 1222 22234444433332
Q ss_pred cCCccEEEECcccC
Q 023441 105 YGSLNLLINASGIL 118 (282)
Q Consensus 105 ~~~id~lv~~ag~~ 118 (282)
..|++|++++..
T Consensus 230 --~~DvVI~~~~~~ 241 (361)
T 1pjc_A 230 --EADLLIGAVLVP 241 (361)
T ss_dssp --TCSEEEECCCCT
T ss_pred --CCCEEEECCCcC
Confidence 689999999874
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00015 Score=63.78 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=54.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+||+|++|.+.++.+...|++ |+.+++++++.+.+.+ .+... ..|.++.+ +.+.+.+.. -+
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~--Vi~~~~~~~~~~~~~~----~Ga~~---~~~~~~~~-~~~~~~~~~--~~ 230 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCH--VIGTCSSDEKSAFLKS----LGCDR---PINYKTEP-VGTVLKQEY--PE 230 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCE--EEEEESSHHHHHHHHH----TTCSE---EEETTTSC-HHHHHHHHC--TT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCE--EEEEECCHHHHHHHHH----cCCcE---EEecCChh-HHHHHHHhc--CC
Confidence 5899999999999999999988889987 9999998766544332 23332 23555433 333333321 13
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|++|+|+|.
T Consensus 231 g~D~vid~~g~ 241 (362)
T 2c0c_A 231 GVDVVYESVGG 241 (362)
T ss_dssp CEEEEEECSCT
T ss_pred CCCEEEECCCH
Confidence 69999999984
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00025 Score=60.69 Aligned_cols=74 Identities=19% Similarity=0.182 Sum_probs=52.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|+||+|++|.+.++.+...|++ |+.+++++++.+.+.+ .+... ..|..+.+++. +.+ +
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~--Vi~~~~~~~~~~~~~~----~ga~~---~~~~~~~~~~~---~~~----~ 188 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLR--VLAAASRPEKLALPLA----LGAEE---AATYAEVPERA---KAW----G 188 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCE--EEEEESSGGGSHHHHH----TTCSE---EEEGGGHHHHH---HHT----T
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHh----cCCCE---EEECCcchhHH---HHh----c
Confidence 5899999999999999999888889986 9999998877654432 23321 13555412222 222 5
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|++++ +|.
T Consensus 189 ~~d~vid-~g~ 198 (302)
T 1iz0_A 189 GLDLVLE-VRG 198 (302)
T ss_dssp SEEEEEE-CSC
T ss_pred CceEEEE-CCH
Confidence 7999999 875
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0003 Score=61.23 Aligned_cols=77 Identities=13% Similarity=0.049 Sum_probs=54.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+|+ +++|...++.+...|++ |+.+++++++++.+.+ .+... .+|.++.+ +.+.+.++. +
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~--Vi~~~~~~~~~~~~~~----lGa~~---~~d~~~~~-~~~~~~~~~---~ 229 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGLN--VVAVDIGDEKLELAKE----LGADL---VVNPLKED-AAKFMKEKV---G 229 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCE--EEEECSCHHHHHHHHH----TTCSE---EECTTTSC-HHHHHHHHH---S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHH----CCCCE---EecCCCcc-HHHHHHHHh---C
Confidence 5899999999 88999999888889986 9999998776654332 23321 25776543 333333322 5
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|++|+++|.
T Consensus 230 ~~d~vid~~g~ 240 (339)
T 1rjw_A 230 GVHAAVVTAVS 240 (339)
T ss_dssp SEEEEEESSCC
T ss_pred CCCEEEECCCC
Confidence 79999999985
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00027 Score=58.91 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=34.8
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP 64 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~ 64 (282)
...+++++|+|.|+ ||+|.++++.|++.|.. .|++++++.
T Consensus 26 q~~l~~~~VlVvG~-Gg~G~~va~~La~~Gv~-~i~lvD~d~ 65 (249)
T 1jw9_B 26 QEALKDSRVLIVGL-GGLGCAASQYLASAGVG-NLTLLDFDT 65 (249)
T ss_dssp HHHHHHCEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECCCB
T ss_pred HHHHhCCeEEEEee-CHHHHHHHHHHHHcCCC-eEEEEcCCC
Confidence 34678899999996 79999999999999974 599999987
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00023 Score=63.02 Aligned_cols=79 Identities=18% Similarity=0.060 Sum_probs=57.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
..+.|++++|+|+ |+||.++++.+...|++ |++.+|+.++++.+.+.. +..+ .+|.++.+++.+++.
T Consensus 164 ~~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~--V~~~d~~~~~l~~~~~~~---g~~~---~~~~~~~~~l~~~l~---- 230 (377)
T 2vhw_A 164 PGVEPADVVVIGA-GTAGYNAARIANGMGAT--VTVLDINIDKLRQLDAEF---CGRI---HTRYSSAYELEGAVK---- 230 (377)
T ss_dssp TTBCCCEEEEECC-SHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHT---TTSS---EEEECCHHHHHHHHH----
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCCE--EEEEeCCHHHHHHHHHhc---CCee---EeccCCHHHHHHHHc----
Confidence 3688999999998 99999999999999986 999999887655443322 2332 234455555554443
Q ss_pred HcCCccEEEECcccC
Q 023441 104 KYGSLNLLINASGIL 118 (282)
Q Consensus 104 ~~~~id~lv~~ag~~ 118 (282)
..|++|++++..
T Consensus 231 ---~aDvVi~~~~~p 242 (377)
T 2vhw_A 231 ---RADLVIGAVLVP 242 (377)
T ss_dssp ---HCSEEEECCCCT
T ss_pred ---CCCEEEECCCcC
Confidence 589999999864
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00025 Score=61.86 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=51.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+||+|++|.+.++.+...|++ |+.+ +++++++.+.+ .+.. . +| .+. ++.+.+.+.... .
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~--Vi~~-~~~~~~~~~~~----lGa~--~--i~-~~~-~~~~~~~~~~~~-~ 215 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGAR--VFAT-ARGSDLEYVRD----LGAT--P--ID-ASR-EPEDYAAEHTAG-Q 215 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEE-ECHHHHHHHHH----HTSE--E--EE-TTS-CHHHHHHHHHTT-S
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCE--EEEE-eCHHHHHHHHH----cCCC--E--ec-cCC-CHHHHHHHHhcC-C
Confidence 5899999999999999999888889987 7777 66555443322 2332 2 45 333 333333333221 3
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.|+|.
T Consensus 216 g~D~vid~~g~ 226 (343)
T 3gaz_A 216 GFDLVYDTLGG 226 (343)
T ss_dssp CEEEEEESSCT
T ss_pred CceEEEECCCc
Confidence 69999999983
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00046 Score=60.23 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=53.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+||+|++|.+.++.+...|++ |+.+++++++.+.+.++ +.... .|..+ ++.+.+.+. ..+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~--Vi~~~~~~~~~~~~~~l----Ga~~v---i~~~~--~~~~~~~~~--~~~ 216 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLR--VITTASRNETIEWTKKM----GADIV---LNHKE--SLLNQFKTQ--GIE 216 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEECCSHHHHHHHHHH----TCSEE---ECTTS--CHHHHHHHH--TCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHhc----CCcEE---EECCc--cHHHHHHHh--CCC
Confidence 6899999999999999999888889986 99999987765544332 33211 24333 233333332 224
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.|+|.
T Consensus 217 g~Dvv~d~~g~ 227 (346)
T 3fbg_A 217 LVDYVFCTFNT 227 (346)
T ss_dssp CEEEEEESSCH
T ss_pred CccEEEECCCc
Confidence 69999999985
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0014 Score=56.37 Aligned_cols=151 Identities=15% Similarity=0.072 Sum_probs=88.9
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeec--CCCcccc-ccccc---ccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR--NPNGATG-LLDLK---NRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r--~~~~~~~-~~~~~---~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++||||+|.+|..++..|+..|....+.+.++ ++++.+. ..++. ...+.++.+...| | ++.+
T Consensus 2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~--d--~l~~------- 70 (313)
T 1hye_A 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES--D--ENLR------- 70 (313)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE--T--TCGG-------
T ss_pred EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC--c--chHH-------
Confidence 689999999999999999999886434888887 5543322 11111 1111223332211 1 1111
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.+...|++||+||.... .+ ..-...+..|+..+..+.+.+..+- + +.++++|.....
T Consensus 71 al~gaD~Vi~~Ag~~~~------~g-------~~r~dl~~~N~~i~~~i~~~i~~~~-~---------~~vlv~SNPv~~ 127 (313)
T 1hye_A 71 IIDESDVVIITSGVPRK------EG-------MSRMDLAKTNAKIVGKYAKKIAEIC-D---------TKIFVITNPVDV 127 (313)
T ss_dssp GGTTCSEEEECCSCCCC------TT-------CCHHHHHHHHHHHHHHHHHHHHHHC-C---------CEEEECSSSHHH
T ss_pred HhCCCCEEEECCCCCCC------CC-------CcHHHHHHHHHHHHHHHHHHHHHhC-C---------eEEEEecCcHHH
Confidence 22379999999997531 11 1123458899999999988887653 2 267777765433
Q ss_pred cC-----CCCCCCcccchh-hHHHHHHHHHHHHHHhc
Q 023441 184 IG-----DNRLGGWHSYRA-SKAALNQLTKSVSVEFG 214 (282)
Q Consensus 184 ~~-----~~~~~~~~~Y~~-sKa~~~~l~~~la~e~~ 214 (282)
.. ..+.+....++. +..--.-+...++..+.
T Consensus 128 ~t~~~~k~~~~p~~rviG~gt~LD~~r~~~~la~~lg 164 (313)
T 1hye_A 128 MTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFG 164 (313)
T ss_dssp HHHHHHHHHCCCTTSEEECTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCcChhcEEEeCccHHHHHHHHHHHHHhC
Confidence 21 112444456776 55444455566666664
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.15 E-value=9.5e-05 Score=56.06 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=51.0
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
|++++|.|+ |++|..+++.|.+.|.+ |++.+|+.++.+...+.. + ... .+..+ +.+++. .
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~--v~v~~r~~~~~~~~a~~~---~--~~~--~~~~~---~~~~~~-------~ 80 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYK--VTVAGRNIDHVRAFAEKY---E--YEY--VLIND---IDSLIK-------N 80 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCE--EEEEESCHHHHHHHHHHH---T--CEE--EECSC---HHHHHH-------T
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCE--EEEEcCCHHHHHHHHHHh---C--Cce--EeecC---HHHHhc-------C
Confidence 899999996 99999999999999976 999999987765543332 2 111 12333 333332 5
Q ss_pred ccEEEECcccC
Q 023441 108 LNLLINASGIL 118 (282)
Q Consensus 108 id~lv~~ag~~ 118 (282)
.|++|++++..
T Consensus 81 ~Divi~at~~~ 91 (144)
T 3oj0_A 81 NDVIITATSSK 91 (144)
T ss_dssp CSEEEECSCCS
T ss_pred CCEEEEeCCCC
Confidence 89999998864
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00089 Score=59.06 Aligned_cols=77 Identities=19% Similarity=0.289 Sum_probs=51.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+||+|++|...++.+...|++ |+..++ .++.+.+ .+.+.... .|..+.+..++ +.+ .+
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~--Vi~~~~-~~~~~~~----~~lGa~~v---~~~~~~~~~~~----~~~-~~ 247 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAH--VTAVCS-QDASELV----RKLGADDV---IDYKSGSVEEQ----LKS-LK 247 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEEC-GGGHHHH----HHTTCSEE---EETTSSCHHHH----HHT-SC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCE--EEEEeC-hHHHHHH----HHcCCCEE---EECCchHHHHH----Hhh-cC
Confidence 5899999999999999999888888986 777774 3333322 23343322 36555432222 222 25
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
++|++|.|+|..
T Consensus 248 g~D~vid~~g~~ 259 (375)
T 2vn8_A 248 PFDFILDNVGGS 259 (375)
T ss_dssp CBSEEEESSCTT
T ss_pred CCCEEEECCCCh
Confidence 799999999853
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00099 Score=57.09 Aligned_cols=149 Identities=12% Similarity=0.033 Sum_probs=84.1
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeec--CCCcccc-ccccccc--CCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR--NPNGATG-LLDLKNR--FPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r--~~~~~~~-~~~~~~~--~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||||+|.+|..++..|+..|....+.+.++ ++++++. ..++... ...++.+.. | +.++
T Consensus 2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~~~a----------- 67 (303)
T 1o6z_A 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--GYED----------- 67 (303)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--CGGG-----------
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--CHHH-----------
Confidence 689999999999999999999886434888888 6544332 1121111 122333332 2 2222
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
+...|++||++|.... .+ ..-.+.+..|+..+..+.+.+..+- .. +.++++|......
T Consensus 68 ~~~aDvVi~~ag~~~~------~g-------~~r~dl~~~N~~i~~~i~~~i~~~~---p~------~~viv~SNPv~~~ 125 (303)
T 1o6z_A 68 TAGSDVVVITAGIPRQ------PG-------QTRIDLAGDNAPIMEDIQSSLDEHN---DD------YISLTTSNPVDLL 125 (303)
T ss_dssp GTTCSEEEECCCCCCC------TT-------CCHHHHHHHHHHHHHHHHHHHHTTC---SC------CEEEECCSSHHHH
T ss_pred hCCCCEEEEcCCCCCC------CC-------CCHHHHHHHHHHHHHHHHHHHHHHC---CC------cEEEEeCChHHHH
Confidence 2369999999997531 11 1122457888888888888776541 11 2666655544322
Q ss_pred C-----CCCCCCcccchh-hHHHHHHHHHHHHHHhc
Q 023441 185 G-----DNRLGGWHSYRA-SKAALNQLTKSVSVEFG 214 (282)
Q Consensus 185 ~-----~~~~~~~~~Y~~-sKa~~~~l~~~la~e~~ 214 (282)
. ..+.+.....+. +..-..-+-..++..+.
T Consensus 126 ~~~~~~~~~~p~~rviG~gt~Ld~~r~~~~la~~l~ 161 (303)
T 1o6z_A 126 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFD 161 (303)
T ss_dssp HHHHHHHSSSCGGGEEECCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHeeecccchhHHHHHHHHHHHhC
Confidence 1 011333445555 33222344445666654
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0011 Score=58.34 Aligned_cols=76 Identities=20% Similarity=0.202 Sum_probs=54.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+|+ |++|...++.+...|++ |++.++++++.+.+.+ +.+... ..|..+.+.+++ ..+
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~--Vi~~~~~~~~~~~~~~---~lGa~~---v~~~~~~~~~~~-------~~~ 250 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSK--VTVISTSPSKKEEALK---NFGADS---FLVSRDQEQMQA-------AAG 250 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCE--EEEEESCGGGHHHHHH---TSCCSE---EEETTCHHHHHH-------TTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHH---hcCCce---EEeccCHHHHHH-------hhC
Confidence 6899999996 99999999888888986 9999998876554332 223321 246666543322 225
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
.+|++|.++|..
T Consensus 251 ~~D~vid~~g~~ 262 (366)
T 1yqd_A 251 TLDGIIDTVSAV 262 (366)
T ss_dssp CEEEEEECCSSC
T ss_pred CCCEEEECCCcH
Confidence 799999999863
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00087 Score=54.39 Aligned_cols=74 Identities=7% Similarity=0.126 Sum_probs=56.9
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
+++|.|+ |.+|..+++.|.++|.+ |++++++++..+.+.+. ..+.++..|.++++.++++ ...+.|
T Consensus 2 ~iiIiG~-G~~G~~la~~L~~~g~~--v~vid~~~~~~~~l~~~-----~~~~~i~gd~~~~~~l~~a------~i~~ad 67 (218)
T 3l4b_C 2 KVIIIGG-ETTAYYLARSMLSRKYG--VVIINKDRELCEEFAKK-----LKATIIHGDGSHKEILRDA------EVSKND 67 (218)
T ss_dssp CEEEECC-HHHHHHHHHHHHHTTCC--EEEEESCHHHHHHHHHH-----SSSEEEESCTTSHHHHHHH------TCCTTC
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCe--EEEEECCHHHHHHHHHH-----cCCeEEEcCCCCHHHHHhc------CcccCC
Confidence 5889996 89999999999999998 99999988766543322 1467889999998877644 124688
Q ss_pred EEEECccc
Q 023441 110 LLINASGI 117 (282)
Q Consensus 110 ~lv~~ag~ 117 (282)
.+|.+.+.
T Consensus 68 ~vi~~~~~ 75 (218)
T 3l4b_C 68 VVVILTPR 75 (218)
T ss_dssp EEEECCSC
T ss_pred EEEEecCC
Confidence 88887763
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0012 Score=57.34 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=53.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCC-CcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKND-KGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~-~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.|+++||+|+ |++|...++.+...|+ + |+.+++++++.+.+.++ . +. ..|..+. ++.+.+.++. .
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~--Vi~~~~~~~~~~~~~~l-a---~~----v~~~~~~-~~~~~~~~~~--~ 229 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGP--ILVSDPNPYRLAFARPY-A---DR----LVNPLEE-DLLEVVRRVT--G 229 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCS--EEEECSCHHHHGGGTTT-C---SE----EECTTTS-CHHHHHHHHH--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCE--EEEECCCHHHHHHHHHh-H---Hh----ccCcCcc-CHHHHHHHhc--C
Confidence 7999999999 9999999988878898 7 99999887765543332 1 11 2455543 3333343332 2
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
..+|++|.++|.
T Consensus 230 ~g~D~vid~~g~ 241 (343)
T 2dq4_A 230 SGVEVLLEFSGN 241 (343)
T ss_dssp SCEEEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 469999999985
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0015 Score=55.51 Aligned_cols=43 Identities=14% Similarity=0.010 Sum_probs=34.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT 68 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~ 68 (282)
..+++++|+|.|+ ||+|..+++.|++.|.- ++.+++++.-+..
T Consensus 32 ~kL~~~~VlVvGa-GGlGs~va~~La~aGVG-~i~lvD~D~Ve~s 74 (292)
T 3h8v_A 32 EKIRTFAVAIVGV-GGVGSVTAEMLTRCGIG-KLLLFDYDKVELA 74 (292)
T ss_dssp CGGGGCEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECCCBC---
T ss_pred HHHhCCeEEEECc-CHHHHHHHHHHHHcCCC-EEEEECCCccChh
Confidence 4578889999986 79999999999999974 7999998875443
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00066 Score=58.65 Aligned_cols=77 Identities=16% Similarity=0.090 Sum_probs=49.9
Q ss_pred Cc-EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 28 GG-VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 28 gk-~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
|+ ++||+||+|++|...++.+...|++ |+.+++++++++.+.+ .+.... +|..+.+ .+.+..+. .+
T Consensus 149 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~--vi~~~~~~~~~~~~~~----lGa~~~---i~~~~~~--~~~~~~~~--~~ 215 (328)
T 1xa0_A 149 ERGPVLVTGATGGVGSLAVSMLAKRGYT--VEASTGKAAEHDYLRV----LGAKEV---LAREDVM--AERIRPLD--KQ 215 (328)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCC--EEEEESCTTCHHHHHH----TTCSEE---EECC-----------CC--SC
T ss_pred CCceEEEecCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHH----cCCcEE---EecCCcH--HHHHHHhc--CC
Confidence 44 7999999999999999888889988 9999998777654432 233321 3554432 11222221 13
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.|+|.
T Consensus 216 ~~d~vid~~g~ 226 (328)
T 1xa0_A 216 RWAAAVDPVGG 226 (328)
T ss_dssp CEEEEEECSTT
T ss_pred cccEEEECCcH
Confidence 69999999985
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0014 Score=57.49 Aligned_cols=84 Identities=11% Similarity=-0.013 Sum_probs=57.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+|+ |++|...++.....|++ .|+.+++++++++.+.++ ...+..+..|-.+.+++.+.+.+... -.
T Consensus 179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~-~Vi~~~~~~~~~~~a~~l----~~~~~~~~~~~~~~~~~~~~v~~~t~-g~ 251 (363)
T 3m6i_A 179 LGDPVLICGA-GPIGLITMLCAKAAGAC-PLVITDIDEGRLKFAKEI----CPEVVTHKVERLSAEESAKKIVESFG-GI 251 (363)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHH----CTTCEEEECCSCCHHHHHHHHHHHTS-SC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHHh----chhcccccccccchHHHHHHHHHHhC-CC
Confidence 5899999998 99999998777778985 478888887776544443 23444455565555555444433321 12
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.++|.
T Consensus 252 g~Dvvid~~g~ 262 (363)
T 3m6i_A 252 EPAVALECTGV 262 (363)
T ss_dssp CCSEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 59999999985
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00065 Score=57.54 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=52.6
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..+++||+++|.|+ ||.|++++..|++.|+. .|.++.|+.++.+++.+.+ ..+ + .+++ .
T Consensus 117 ~~~~~~k~vlvlGa-GGaaraia~~L~~~G~~-~v~v~nRt~~ka~~La~~~-------~~~--~---~~~l-------~ 175 (282)
T 3fbt_A 117 RVEIKNNICVVLGS-GGAARAVLQYLKDNFAK-DIYVVTRNPEKTSEIYGEF-------KVI--S---YDEL-------S 175 (282)
T ss_dssp TCCCTTSEEEEECS-STTHHHHHHHHHHTTCS-EEEEEESCHHHHHHHCTTS-------EEE--E---HHHH-------T
T ss_pred CCCccCCEEEEECC-cHHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHhc-------Ccc--c---HHHH-------H
Confidence 35678999999997 69999999999999983 4999999988766544332 111 1 1222 1
Q ss_pred HHcCCccEEEECcccC
Q 023441 103 EKYGSLNLLINASGIL 118 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~ 118 (282)
+ . ..|+|||++...
T Consensus 176 ~-l-~~DivInaTp~G 189 (282)
T 3fbt_A 176 N-L-KGDVIINCTPKG 189 (282)
T ss_dssp T-C-CCSEEEECSSTT
T ss_pred h-c-cCCEEEECCccC
Confidence 2 3 689999999654
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00086 Score=59.88 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=52.5
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++.|++++|.|+ |++|..+++.|...|.. .|++.+|+.++.+...+.. +.. . .+. +++.+++
T Consensus 164 ~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~-~V~v~~r~~~ra~~la~~~---g~~--~--~~~---~~l~~~l------ 225 (404)
T 1gpj_A 164 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVR-AVLVANRTYERAVELARDL---GGE--A--VRF---DELVDHL------ 225 (404)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCS-EEEEECSSHHHHHHHHHHH---TCE--E--CCG---GGHHHHH------
T ss_pred cccCCEEEEECh-HHHHHHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHc---CCc--e--ecH---HhHHHHh------
Confidence 478999999998 99999999999999983 4999999877654333222 221 1 222 2333333
Q ss_pred cCCccEEEECcccC
Q 023441 105 YGSLNLLINASGIL 118 (282)
Q Consensus 105 ~~~id~lv~~ag~~ 118 (282)
...|++|.+++..
T Consensus 226 -~~aDvVi~at~~~ 238 (404)
T 1gpj_A 226 -ARSDVVVSATAAP 238 (404)
T ss_dssp -HTCSEEEECCSSS
T ss_pred -cCCCEEEEccCCC
Confidence 2689999998753
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0015 Score=54.88 Aligned_cols=66 Identities=21% Similarity=0.187 Sum_probs=49.9
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
||+++|.|+ ||.|++++..|++.|.+ |.+..|+.++.+.+. .. + +... ++.+. ..
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~--v~V~nRt~~ka~~la-~~---~--~~~~--~~~~l--------------~~ 172 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQ--VSVLNRSSRGLDFFQ-RL---G--CDCF--MEPPK--------------SA 172 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSSCTTHHHHH-HH---T--CEEE--SSCCS--------------SC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHH-HC---C--CeEe--cHHHh--------------cc
Confidence 899999997 99999999999999955 999999998877655 32 1 2222 22221 15
Q ss_pred ccEEEECcccC
Q 023441 108 LNLLINASGIL 118 (282)
Q Consensus 108 id~lv~~ag~~ 118 (282)
.|++||+....
T Consensus 173 ~DiVInaTp~G 183 (269)
T 3phh_A 173 FDLIINATSAS 183 (269)
T ss_dssp CSEEEECCTTC
T ss_pred CCEEEEcccCC
Confidence 89999998765
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0012 Score=57.98 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=51.1
Q ss_pred cC-cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCCh--hHHHHHHHHHHH
Q 023441 27 KG-GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE--STIEASAKSIKE 103 (282)
Q Consensus 27 ~g-k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~--~~~~~~~~~~~~ 103 (282)
.| +++||+||+|++|...++.+...|++ ++.++++.++.....+.+.+.+.... .|..+. +++.+.+.++..
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~--vi~~~~~~~~~~~~~~~~~~lGa~~v---i~~~~~~~~~~~~~i~~~t~ 240 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNFN--SISVIRDRPNLDEVVASLKELGATQV---ITEDQNNSREFGPTIKEWIK 240 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCE--EEEEECCCTTHHHHHHHHHHHTCSEE---EEHHHHHCGGGHHHHHHHHH
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCCE--EEEEecCccccHHHHHHHHhcCCeEE---EecCccchHHHHHHHHHHhh
Confidence 47 99999999999999988776678987 88888776652111112223343322 222220 222222332220
Q ss_pred -HcCCccEEEECccc
Q 023441 104 -KYGSLNLLINASGI 117 (282)
Q Consensus 104 -~~~~id~lv~~ag~ 117 (282)
..+.+|++|.++|.
T Consensus 241 ~~~~g~Dvvid~~G~ 255 (364)
T 1gu7_A 241 QSGGEAKLALNCVGG 255 (364)
T ss_dssp HHTCCEEEEEESSCH
T ss_pred ccCCCceEEEECCCc
Confidence 12469999999985
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0012 Score=57.54 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=53.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCC-CcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKND-KGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~-~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.|+++||+|+ |++|...++.+...|+ + |+.+++++++.+.+.+ .+... ..|..+.+ +.+.+.++...
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~--Vi~~~~~~~~~~~~~~----~Ga~~---~~~~~~~~-~~~~v~~~~~g- 234 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYP--VIVSEPSDFRRELAKK----VGADY---VINPFEED-VVKEVMDITDG- 234 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCS--EEEECSCHHHHHHHHH----HTCSE---EECTTTSC-HHHHHHHHTTT-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCE--EEEECCCHHHHHHHHH----hCCCE---EECCCCcC-HHHHHHHHcCC-
Confidence 8999999999 9999999988888998 7 9999998766543332 23221 13555433 32222222111
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
..+|++|.++|.
T Consensus 235 ~g~D~vid~~g~ 246 (348)
T 2d8a_A 235 NGVDVFLEFSGA 246 (348)
T ss_dssp SCEEEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 259999999985
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0016 Score=57.22 Aligned_cols=78 Identities=14% Similarity=0.200 Sum_probs=53.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+| +|++|...++.+...|++ |+++++++++++.+.+ .+.... .| .+.+++.+.+.++... .
T Consensus 189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga~--Vi~~~~~~~~~~~~~~----lGa~~v---i~-~~~~~~~~~v~~~~~g-~ 256 (363)
T 3uog_A 189 AGDRVVVQG-TGGVALFGLQIAKATGAE--VIVTSSSREKLDRAFA----LGADHG---IN-RLEEDWVERVYALTGD-R 256 (363)
T ss_dssp TTCEEEEES-SBHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHH----HTCSEE---EE-TTTSCHHHHHHHHHTT-C
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCE--EEEEecCchhHHHHHH----cCCCEE---Ec-CCcccHHHHHHHHhCC-C
Confidence 589999999 899999999888888987 9999988776654333 233222 35 4434444444433321 2
Q ss_pred CccEEEECcc
Q 023441 107 SLNLLINASG 116 (282)
Q Consensus 107 ~id~lv~~ag 116 (282)
.+|+++.++|
T Consensus 257 g~D~vid~~g 266 (363)
T 3uog_A 257 GADHILEIAG 266 (363)
T ss_dssp CEEEEEEETT
T ss_pred CceEEEECCC
Confidence 6999999999
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0024 Score=55.72 Aligned_cols=81 Identities=22% Similarity=0.168 Sum_probs=52.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCC-hhHHHHHHHHHHH-H
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV-ESTIEASAKSIKE-K 104 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~-~~~~~~~~~~~~~-~ 104 (282)
.|+++||+|+ |++|...++.+...|++ |+++++++++++.+. +.+... ..|.++ .+..+++.+.... .
T Consensus 168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~--Vi~~~~~~~~~~~~~----~lGa~~---~~~~~~~~~~~~~i~~~~~~~~ 237 (352)
T 1e3j_A 168 LGTTVLVIGA-GPIGLVSVLAAKAYGAF--VVCTARSPRRLEVAK----NCGADV---TLVVDPAKEEESSIIERIRSAI 237 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHH----HTTCSE---EEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCE--EEEEcCCHHHHHHHH----HhCCCE---EEcCcccccHHHHHHHHhcccc
Confidence 5899999997 89999999877778987 888888877655433 223331 235553 3323332222110 0
Q ss_pred cCCccEEEECccc
Q 023441 105 YGSLNLLINASGI 117 (282)
Q Consensus 105 ~~~id~lv~~ag~ 117 (282)
.+.+|+++.++|.
T Consensus 238 g~g~D~vid~~g~ 250 (352)
T 1e3j_A 238 GDLPNVTIDCSGN 250 (352)
T ss_dssp SSCCSEEEECSCC
T ss_pred CCCCCEEEECCCC
Confidence 1369999999985
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0018 Score=53.91 Aligned_cols=72 Identities=21% Similarity=0.186 Sum_probs=50.9
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++| +++|.|+ ||.|++++..|++.|.. .|++.+|+.++.+++.+... .. +. +++.+.+.
T Consensus 106 ~~~~-~vliiGa-Gg~a~ai~~~L~~~G~~-~I~v~nR~~~ka~~la~~~~-------~~--~~---~~~~~~~~----- 165 (253)
T 3u62_A 106 EVKE-PVVVVGA-GGAARAVIYALLQMGVK-DIWVVNRTIERAKALDFPVK-------IF--SL---DQLDEVVK----- 165 (253)
T ss_dssp CCCS-SEEEECC-SHHHHHHHHHHHHTTCC-CEEEEESCHHHHHTCCSSCE-------EE--EG---GGHHHHHH-----
T ss_pred CCCC-eEEEECc-HHHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHcc-------cC--CH---HHHHhhhc-----
Confidence 5678 9999987 89999999999999982 39999999877665443321 11 22 23333222
Q ss_pred cCCccEEEECcccC
Q 023441 105 YGSLNLLINASGIL 118 (282)
Q Consensus 105 ~~~id~lv~~ag~~ 118 (282)
..|+||++....
T Consensus 166 --~aDiVInatp~g 177 (253)
T 3u62_A 166 --KAKSLFNTTSVG 177 (253)
T ss_dssp --TCSEEEECSSTT
T ss_pred --CCCEEEECCCCC
Confidence 589999988654
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0029 Score=55.67 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=53.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCC-hhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV-ESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~-~~~~~~~~~~~~~~~ 105 (282)
.|+++||+|+ |++|...++.+...|+. .|+.+++++++++.+.+ .+... ..|.++ .+++.+.+.++..
T Consensus 192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~-~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~~~~~~~~~~~~-- 260 (374)
T 1cdo_A 192 PGSTCAVFGL-GAVGLAAVMGCHSAGAK-RIIAVDLNPDKFEKAKV----FGATD---FVNPNDHSEPISQVLSKMTN-- 260 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEECSCGGGHHHHHH----TTCCE---EECGGGCSSCHHHHHHHHHT--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-EEEEEcCCHHHHHHHHH----hCCce---EEeccccchhHHHHHHHHhC--
Confidence 5899999995 99999999877778983 38888888877654332 23321 135443 1234444444333
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+.+|++|.++|.
T Consensus 261 ~g~D~vid~~g~ 272 (374)
T 1cdo_A 261 GGVDFSLECVGN 272 (374)
T ss_dssp SCBSEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 479999999985
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0033 Score=54.53 Aligned_cols=77 Identities=10% Similarity=0.034 Sum_probs=53.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+|+ |++|...++.+...|++ |+.+++++++.+.+.+ .+.... .|..+.+..+++.+ ..+
T Consensus 166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~--Vi~~~~~~~~~~~~~~----lGa~~~---i~~~~~~~~~~~~~----~~g 231 (340)
T 3s2e_A 166 PGQWVVISGI-GGLGHVAVQYARAMGLR--VAAVDIDDAKLNLARR----LGAEVA---VNARDTDPAAWLQK----EIG 231 (340)
T ss_dssp TTSEEEEECC-STTHHHHHHHHHHTTCE--EEEEESCHHHHHHHHH----TTCSEE---EETTTSCHHHHHHH----HHS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCe--EEEEeCCHHHHHHHHH----cCCCEE---EeCCCcCHHHHHHH----hCC
Confidence 5899999997 89999999877778986 9999998876654332 343322 36555443333222 335
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.++|.
T Consensus 232 ~~d~vid~~g~ 242 (340)
T 3s2e_A 232 GAHGVLVTAVS 242 (340)
T ss_dssp SEEEEEESSCC
T ss_pred CCCEEEEeCCC
Confidence 89999999884
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0021 Score=56.30 Aligned_cols=74 Identities=11% Similarity=0.052 Sum_probs=52.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCCh-hHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE-STIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~-~~~~~~~~~~~~~~ 105 (282)
.|+++||+|+ |++|...++.+...|++ |+.+++++++++.+.++ +.... .|..+. +.. +.+.
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~--Vi~~~~~~~~~~~~~~l----Ga~~v---~~~~~~~~~~----~~~~--- 241 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAE--TYVISRSSRKREDAMKM----GADHY---IATLEEGDWG----EKYF--- 241 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCE--EEEEESSSTTHHHHHHH----TCSEE---EEGGGTSCHH----HHSC---
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCE--EEEEcCCHHHHHHHHHc----CCCEE---EcCcCchHHH----HHhh---
Confidence 5899999999 99999999877778987 99999988876644332 33211 344433 222 1221
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+++|++|.++|.
T Consensus 242 ~~~D~vid~~g~ 253 (360)
T 1piw_A 242 DTFDLIVVCASS 253 (360)
T ss_dssp SCEEEEEECCSC
T ss_pred cCCCEEEECCCC
Confidence 479999999986
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0021 Score=56.00 Aligned_cols=70 Identities=20% Similarity=0.165 Sum_probs=51.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+|+ |++|...++.+...|++ |+.+++++++.+.+.+ .+....+ ++.+.+.+
T Consensus 176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~--Vi~~~~~~~~~~~~~~----lGa~~v~-----~~~~~~~~---------- 233 (348)
T 3two_A 176 KGTKVGVAGF-GGLGSMAVKYAVAMGAE--VSVFARNEHKKQDALS----MGVKHFY-----TDPKQCKE---------- 233 (348)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHTTCE--EEEECSSSTTHHHHHH----TTCSEEE-----SSGGGCCS----------
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCe--EEEEeCCHHHHHHHHh----cCCCeec-----CCHHHHhc----------
Confidence 5899999997 99999998777778986 9999998887664433 3443332 34443322
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
.+|+++.++|..
T Consensus 234 ~~D~vid~~g~~ 245 (348)
T 3two_A 234 ELDFIISTIPTH 245 (348)
T ss_dssp CEEEEEECCCSC
T ss_pred CCCEEEECCCcH
Confidence 699999999864
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0043 Score=51.59 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=35.3
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
...+++++|+|.|+ ||+|.++++.|++.|.. .+.+++++.-.
T Consensus 23 q~~l~~~~VlvvG~-GglG~~va~~La~~Gvg-~i~lvD~d~v~ 64 (251)
T 1zud_1 23 QQKLLDSQVLIIGL-GGLGTPAALYLAGAGVG-TLVLADDDDVH 64 (251)
T ss_dssp HHHHHTCEEEEECC-STTHHHHHHHHHHTTCS-EEEEECCCBCC
T ss_pred HHHHhcCcEEEEcc-CHHHHHHHHHHHHcCCC-eEEEEeCCCcc
Confidence 34678899999998 67999999999999985 68888877644
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0033 Score=55.35 Aligned_cols=80 Identities=14% Similarity=0.178 Sum_probs=53.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCC-hhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV-ESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~-~~~~~~~~~~~~~~~ 105 (282)
.|+++||+|+ |++|...++.+...|+. .|+.+++++++.+.+.+ .+... ..|.++ .+++.+.+.++..
T Consensus 191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~-~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~~~~~~~~~~~~-- 259 (374)
T 2jhf_A 191 QGSTCAVFGL-GGVGLSVIMGCKAAGAA-RIIGVDINKDKFAKAKE----VGATE---CVNPQDYKKPIQEVLTEMSN-- 259 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEECSCGGGHHHHHH----TTCSE---EECGGGCSSCHHHHHHHHTT--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHH----hCCce---EecccccchhHHHHHHHHhC--
Confidence 5899999995 99999999877778983 38888888877654332 23321 135443 1234444443322
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+.+|++|.++|.
T Consensus 260 ~g~D~vid~~g~ 271 (374)
T 2jhf_A 260 GGVDFSFEVIGR 271 (374)
T ss_dssp SCBSEEEECSCC
T ss_pred CCCcEEEECCCC
Confidence 479999999985
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0043 Score=54.25 Aligned_cols=77 Identities=17% Similarity=0.287 Sum_probs=50.4
Q ss_pred ccCcEEEEecCCCchhHHH-HHHH-HhcCCCcEEEEeecCCC---cccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEF-AKQL-LEKNDKGCVIATCRNPN---GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~-a~~l-a~~G~~~~vi~~~r~~~---~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
+.++++||+|+ |++|... ++-+ ...|++ +|+.++++++ +++.+. +.+. ..+ |..+.+ +.+ +.+
T Consensus 171 ~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~-~Vi~~~~~~~~~~~~~~~~----~lGa--~~v--~~~~~~-~~~-i~~ 238 (357)
T 2b5w_A 171 WDPSSAFVLGN-GSLGLLTLAMLKVDDKGYE-NLYCLGRRDRPDPTIDIIE----ELDA--TYV--DSRQTP-VED-VPD 238 (357)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHCTTCCC-EEEEEECCCSSCHHHHHHH----HTTC--EEE--ETTTSC-GGG-HHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHHHcCCc-EEEEEeCCcccHHHHHHHH----HcCC--ccc--CCCccC-HHH-HHH
Confidence 33499999999 9999998 7544 456874 5888898877 554332 2233 223 655433 323 333
Q ss_pred HHHHcCCccEEEECccc
Q 023441 101 IKEKYGSLNLLINASGI 117 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~ 117 (282)
+ .+.+|++|.++|.
T Consensus 239 ~---~gg~Dvvid~~g~ 252 (357)
T 2b5w_A 239 V---YEQMDFIYEATGF 252 (357)
T ss_dssp H---SCCEEEEEECSCC
T ss_pred h---CCCCCEEEECCCC
Confidence 3 2479999999985
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.003 Score=55.68 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=54.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCC-hhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV-ESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~-~~~~~~~~~~~~~~~ 105 (282)
.|+++||+|+ |++|...++.+...|+. +|+.+++++++++.+. +.+... ..|..+ .+++.+.+.++..
T Consensus 193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~-~Vi~~~~~~~~~~~a~----~lGa~~---vi~~~~~~~~~~~~i~~~~~-- 261 (378)
T 3uko_A 193 PGSNVAIFGL-GTVGLAVAEGAKTAGAS-RIIGIDIDSKKYETAK----KFGVNE---FVNPKDHDKPIQEVIVDLTD-- 261 (378)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHHTCS-CEEEECSCTTHHHHHH----TTTCCE---EECGGGCSSCHHHHHHHHTT--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHH----HcCCcE---EEccccCchhHHHHHHHhcC--
Confidence 5899999998 99999998777778982 3999998888766433 234322 234442 2334444443332
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+.+|+++.++|.
T Consensus 262 gg~D~vid~~g~ 273 (378)
T 3uko_A 262 GGVDYSFECIGN 273 (378)
T ss_dssp SCBSEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 379999999985
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0068 Score=52.03 Aligned_cols=83 Identities=14% Similarity=0.033 Sum_probs=58.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCcee-EEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLD-VLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~-~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++.||+++|.|++.-+|+.+|+.|+..|+. |.+++|+........+.+. ...+ ...+..++++++.+.+.
T Consensus 173 ~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAt--Vtv~nR~~~~l~~ra~~la---~~~~~~t~~~~t~~~~L~e~l~--- 244 (320)
T 1edz_A 173 NRLYGKKCIVINRSEIVGRPLAALLANDGAT--VYSVDVNNIQKFTRGESLK---LNKHHVEDLGEYSEDLLKKCSL--- 244 (320)
T ss_dssp CTTTTCEEEEECCCTTTHHHHHHHHHTTSCE--EEEECSSEEEEEESCCCSS---CCCCEEEEEEECCHHHHHHHHH---
T ss_pred CCCCCCEEEEECCCcchHHHHHHHHHHCCCE--EEEEeCchHHHHhHHHHHh---hhcccccccccccHhHHHHHhc---
Confidence 3789999999999999999999999999987 9999998655443332222 1111 11222244566766666
Q ss_pred HHcCCccEEEECcccC
Q 023441 103 EKYGSLNLLINASGIL 118 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~ 118 (282)
.-|++|.++|..
T Consensus 245 ----~ADIVIsAtg~p 256 (320)
T 1edz_A 245 ----DSDVVITGVPSE 256 (320)
T ss_dssp ----HCSEEEECCCCT
T ss_pred ----cCCEEEECCCCC
Confidence 369999999974
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0045 Score=54.51 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=53.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCC-hhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV-ESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~-~~~~~~~~~~~~~~~ 105 (282)
.|+++||+|+ |++|...++.+...|+. +|+.+++++++++.+.+ .+.... .|.++ .+++.+.+.++..
T Consensus 195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~-~Vi~~~~~~~~~~~a~~----lGa~~v---i~~~~~~~~~~~~v~~~~~-- 263 (376)
T 1e3i_A 195 PGSTCAVFGL-GCVGLSAIIGCKIAGAS-RIIAIDINGEKFPKAKA----LGATDC---LNPRELDKPVQDVITELTA-- 263 (376)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEECSCGGGHHHHHH----TTCSEE---ECGGGCSSCHHHHHHHHHT--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHH----hCCcEE---EccccccchHHHHHHHHhC--
Confidence 5899999996 99999998777778983 38888888877654332 233211 34443 1234443443332
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+.+|++|.++|.
T Consensus 264 ~g~Dvvid~~G~ 275 (376)
T 1e3i_A 264 GGVDYSLDCAGT 275 (376)
T ss_dssp SCBSEEEESSCC
T ss_pred CCccEEEECCCC
Confidence 479999999985
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.004 Score=54.78 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=51.6
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
-.|+++||+||+|++|...++.+...|++ |+... ++++++ ...+.|.... .|..+.+ +.+.+.++..
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~--Vi~~~-~~~~~~----~~~~lGa~~v---i~~~~~~-~~~~v~~~t~-- 229 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYI--PIATC-SPHNFD----LAKSRGAEEV---FDYRAPN-LAQTIRTYTK-- 229 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEE-CGGGHH----HHHHTTCSEE---EETTSTT-HHHHHHHHTT--
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCE--EEEEe-CHHHHH----HHHHcCCcEE---EECCCch-HHHHHHHHcc--
Confidence 46899999999999999999888788987 77665 444433 2333444322 3555543 3222322221
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+++|+++.++|.
T Consensus 230 g~~d~v~d~~g~ 241 (371)
T 3gqv_A 230 NNLRYALDCITN 241 (371)
T ss_dssp TCCCEEEESSCS
T ss_pred CCccEEEECCCc
Confidence 469999999995
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0039 Score=54.56 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=52.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.|+++||+|+ |++|...++.+... |++ |+.+++++++++.+. +.+.... .|..+. +.+.+.++..
T Consensus 186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga~--Vi~~~~~~~~~~~~~----~lGa~~v---i~~~~~--~~~~v~~~~~-- 251 (359)
T 1h2b_A 186 PGAYVAIVGV-GGLGHIAVQLLKVMTPAT--VIALDVKEEKLKLAE----RLGADHV---VDARRD--PVKQVMELTR-- 251 (359)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCE--EEEEESSHHHHHHHH----HTTCSEE---EETTSC--HHHHHHHHTT--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCe--EEEEeCCHHHHHHHH----HhCCCEE---Eeccch--HHHHHHHHhC--
Confidence 5899999999 89999988766667 886 999998877655433 2343221 355553 3333333221
Q ss_pred C-CccEEEECccc
Q 023441 106 G-SLNLLINASGI 117 (282)
Q Consensus 106 ~-~id~lv~~ag~ 117 (282)
+ .+|++|.++|.
T Consensus 252 g~g~Dvvid~~G~ 264 (359)
T 1h2b_A 252 GRGVNVAMDFVGS 264 (359)
T ss_dssp TCCEEEEEESSCC
T ss_pred CCCCcEEEECCCC
Confidence 3 69999999985
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0064 Score=53.08 Aligned_cols=80 Identities=18% Similarity=0.111 Sum_probs=51.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCC--ChhHHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT--VESTIEASAKSIKEK 104 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls--~~~~~~~~~~~~~~~ 104 (282)
.|+++||+|+ |++|...++.+...|+. .|+.+++++++.+.+. +.+.. .+ .|.. +.++..+.+.+...
T Consensus 171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~-~Vi~~~~~~~~~~~a~----~lGa~-~v--i~~~~~~~~~~~~~i~~~~~- 240 (356)
T 1pl8_A 171 LGHKVLVCGA-GPIGMVTLLVAKAMGAA-QVVVTDLSATRLSKAK----EIGAD-LV--LQISKESPQEIARKVEGQLG- 240 (356)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEEESCHHHHHHHH----HTTCS-EE--EECSSCCHHHHHHHHHHHHT-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHH----HhCCC-EE--EcCcccccchHHHHHHHHhC-
Confidence 5899999996 89999988777778983 3888888876654332 23433 12 3444 22333322322222
Q ss_pred cCCccEEEECccc
Q 023441 105 YGSLNLLINASGI 117 (282)
Q Consensus 105 ~~~id~lv~~ag~ 117 (282)
+.+|++|.++|.
T Consensus 241 -~g~D~vid~~g~ 252 (356)
T 1pl8_A 241 -CKPEVTIECTGA 252 (356)
T ss_dssp -SCCSEEEECSCC
T ss_pred -CCCCEEEECCCC
Confidence 469999999985
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0043 Score=54.54 Aligned_cols=75 Identities=15% Similarity=0.089 Sum_probs=52.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.++||+|+ |++|...++.+...|++ |+.+++++++++.+.+ .+... ..|..+.+.+++ +. +
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~--Vi~~~~~~~~~~~a~~----lGa~~---vi~~~~~~~~~~----~~---~ 256 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGAH--VVAFTTSEAKREAAKA----LGADE---VVNSRNADEMAA----HL---K 256 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCE--EEEEESSGGGHHHHHH----HTCSE---EEETTCHHHHHT----TT---T
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHH----cCCcE---EeccccHHHHHH----hh---c
Confidence 5899999998 89999999777778987 9999998877654433 23321 246655443322 11 4
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
.+|++|.++|..
T Consensus 257 g~Dvvid~~g~~ 268 (369)
T 1uuf_A 257 SFDFILNTVAAP 268 (369)
T ss_dssp CEEEEEECCSSC
T ss_pred CCCEEEECCCCH
Confidence 799999999863
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0049 Score=54.39 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=52.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCC-CcEEEEeecCCCcccccccccccCCCceeEEEeeCC--ChhHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKND-KGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT--VESTIEASAKSIKE 103 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~-~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls--~~~~~~~~~~~~~~ 103 (282)
.|+++||+| +|++|...++.+...|+ + |+.+++++++++.+. +.+... + .|.. +.+++.+.+.++..
T Consensus 195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~--Vi~~~~~~~~~~~~~----~lGa~~-v--i~~~~~~~~~~~~~v~~~~~ 264 (380)
T 1vj0_A 195 AGKTVVIQG-AGPLGLFGVVIARSLGAEN--VIVIAGSPNRLKLAE----EIGADL-T--LNRRETSVEERRKAIMDITH 264 (380)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHTTBSE--EEEEESCHHHHHHHH----HTTCSE-E--EETTTSCHHHHHHHHHHHTT
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHcCCce--EEEEcCCHHHHHHHH----HcCCcE-E--EeccccCcchHHHHHHHHhC
Confidence 589999999 89999999987777894 6 999998877655433 234321 1 2443 13333333332221
Q ss_pred HcCCccEEEECccc
Q 023441 104 KYGSLNLLINASGI 117 (282)
Q Consensus 104 ~~~~id~lv~~ag~ 117 (282)
. ..+|++|.++|.
T Consensus 265 g-~g~Dvvid~~g~ 277 (380)
T 1vj0_A 265 G-RGADFILEATGD 277 (380)
T ss_dssp T-SCEEEEEECSSC
T ss_pred C-CCCcEEEECCCC
Confidence 1 159999999985
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0039 Score=54.78 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=52.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCC-hhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV-ESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~-~~~~~~~~~~~~~~~ 105 (282)
.|+++||+|+ |++|...++.+...|+. .|+.+++++++.+.+.++ +... + .|.++ .+++.+.+.++..
T Consensus 190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga~-~Vi~~~~~~~~~~~~~~l----Ga~~-v--i~~~~~~~~~~~~v~~~~~-- 258 (373)
T 2fzw_A 190 PGSVCAVFGL-GGVGLAVIMGCKVAGAS-RIIGVDINKDKFARAKEF----GATE-C--INPQDFSKPIQEVLIEMTD-- 258 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSCGGGHHHHHHH----TCSE-E--ECGGGCSSCHHHHHHHHTT--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHc----CCce-E--eccccccccHHHHHHHHhC--
Confidence 5899999996 99999998777778983 388888888776544322 3321 1 34443 1234433433322
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+.+|+++.++|.
T Consensus 259 ~g~D~vid~~g~ 270 (373)
T 2fzw_A 259 GGVDYSFECIGN 270 (373)
T ss_dssp SCBSEEEECSCC
T ss_pred CCCCEEEECCCc
Confidence 379999999985
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0052 Score=54.25 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=55.1
Q ss_pred ccCcEEEEec-CCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 26 WKGGVSLVQG-ASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 26 ~~gk~vlItG-as~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
-.|.++||.| |+|++|...++.+...|++ |+.+++++++.+.+.+ .+.... .|..+.+ +.+.+.++...
T Consensus 169 ~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~--Vi~~~~~~~~~~~~~~----lGa~~~---~~~~~~~-~~~~v~~~t~~ 238 (379)
T 3iup_A 169 LEGHSALVHTAAASNLGQMLNQICLKDGIK--LVNIVRKQEQADLLKA----QGAVHV---CNAASPT-FMQDLTEALVS 238 (379)
T ss_dssp HTTCSCEEESSTTSHHHHHHHHHHHHHTCC--EEEEESSHHHHHHHHH----TTCSCE---EETTSTT-HHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHh----CCCcEE---EeCCChH-HHHHHHHHhcC
Confidence 4688999997 9999999998777778998 9999888776554333 343322 3555443 22223322221
Q ss_pred cCCccEEEECcccC
Q 023441 105 YGSLNLLINASGIL 118 (282)
Q Consensus 105 ~~~id~lv~~ag~~ 118 (282)
..+|+++.|+|..
T Consensus 239 -~g~d~v~d~~g~~ 251 (379)
T 3iup_A 239 -TGATIAFDATGGG 251 (379)
T ss_dssp -HCCCEEEESCEEE
T ss_pred -CCceEEEECCCch
Confidence 2699999999964
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0028 Score=55.58 Aligned_cols=77 Identities=17% Similarity=0.256 Sum_probs=49.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHh--cCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLE--KNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~--~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.|+++||+||+|++|...+ ++++ .|++ |+.+++++++.+.+.+ .+.... .|..+ ++.+.+.++ .
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~-qlak~~~g~~--Vi~~~~~~~~~~~~~~----lGad~v---i~~~~--~~~~~v~~~--~ 236 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAV-QIARQRTDLT--VIATASRPETQEWVKS----LGAHHV---IDHSK--PLAAEVAAL--G 236 (363)
T ss_dssp SEEEEEEESTTSHHHHHHH-HHHHHHCCSE--EEEECSSHHHHHHHHH----TTCSEE---ECTTS--CHHHHHHTT--C
T ss_pred CCCEEEEECCCCHHHHHHH-HHHHHhcCCE--EEEEeCCHHHHHHHHH----cCCCEE---EeCCC--CHHHHHHHh--c
Confidence 5899999999999998877 4555 3665 9999998776554332 343322 24433 222222222 1
Q ss_pred cCCccEEEECccc
Q 023441 105 YGSLNLLINASGI 117 (282)
Q Consensus 105 ~~~id~lv~~ag~ 117 (282)
.+.+|+++.|+|.
T Consensus 237 ~~g~Dvvid~~g~ 249 (363)
T 4dvj_A 237 LGAPAFVFSTTHT 249 (363)
T ss_dssp SCCEEEEEECSCH
T ss_pred CCCceEEEECCCc
Confidence 2469999999985
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0051 Score=54.79 Aligned_cols=43 Identities=21% Similarity=0.050 Sum_probs=37.2
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL 70 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~ 70 (282)
.+.|++++|+|+ |.+|..+++.+...|++ |++.+++...++.+
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~--V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 169 KVPPAKVMVIGA-GVAGLAAIGAANSLGAI--VRAFDTRPEVKEQV 211 (401)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSCGGGHHHH
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCCE--EEEEcCCHHHHHHH
Confidence 477999999996 89999999999999986 99999988776543
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.013 Score=50.35 Aligned_cols=119 Identities=15% Similarity=0.061 Sum_probs=69.2
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC-CceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP-ERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~-~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++.|+||+|.+|..++..|+..|.-..|++.++++ ......++..... .++.... ...+.+++++ ..
T Consensus 2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~-~~~~a~dL~~~~~~~~l~~~~----~t~d~~~a~~-------~a 69 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIETRATVKGYL----GPEQLPDCLK-------GC 69 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-HHHHHHHHTTSSSSCEEEEEE----SGGGHHHHHT-------TC
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc-cHHHHHHHhccCcCceEEEec----CCCCHHHHhC-------CC
Confidence 58999999999999999999888322499999987 2111223222111 1122110 0123333333 68
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
|++|+++|....+ + +.-.+.+..|......+.+.+..+- .. ..++++|-...
T Consensus 70 DvVvi~ag~~~~~------g-------~~r~dl~~~n~~i~~~i~~~i~~~~---p~------a~viv~sNPv~ 121 (314)
T 1mld_A 70 DVVVIPAGVPRKP------G-------MTRDDLFNTNATIVATLTAACAQHC---PD------AMICIISNPVN 121 (314)
T ss_dssp SEEEECCSCCCCT------T-------CCGGGGHHHHHHHHHHHHHHHHHHC---TT------SEEEECSSCHH
T ss_pred CEEEECCCcCCCC------C-------CcHHHHHHHHHHHHHHHHHHHHhhC---CC------eEEEEECCCcc
Confidence 9999999986411 1 0112346777777766666665532 22 27777766554
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0071 Score=52.85 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=52.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+|+ |++|...++.+...|++ |+.+++++++++.+.+ +.+.... .|..+.+.++ +..+
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~--Vi~~~~~~~~~~~~~~---~lGa~~v---i~~~~~~~~~-------~~~~ 243 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGHH--VTVISSSNKKREEALQ---DLGADDY---VIGSDQAKMS-------ELAD 243 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCE--EEEEESSTTHHHHHHT---TSCCSCE---EETTCHHHHH-------HSTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCe--EEEEeCChHHHHHHHH---HcCCcee---eccccHHHHH-------HhcC
Confidence 6899999995 99999999777778986 9999998876554332 2233221 3555543322 2224
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
.+|+++.++|..
T Consensus 244 g~D~vid~~g~~ 255 (357)
T 2cf5_A 244 SLDYVIDTVPVH 255 (357)
T ss_dssp TEEEEEECCCSC
T ss_pred CCCEEEECCCCh
Confidence 799999999853
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0014 Score=57.33 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=47.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+||+|++|...++-+...|++ ++.+++..+..+...+...+.|.... + |..+.. ..+ +.++....+
T Consensus 167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~--vi~~~~~~~~~~~~~~~~~~lGa~~v-i--~~~~~~-~~~-~~~~~~~~~ 239 (357)
T 1zsy_A 167 PGDSVIQNASNSGVGQAVIQIAAALGLR--TINVVRDRPDIQKLSDRLKSLGAEHV-I--TEEELR-RPE-MKNFFKDMP 239 (357)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCE--EEEEECCCSCHHHHHHHHHHTTCSEE-E--EHHHHH-SGG-GGGTTSSSC
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHcCCE--EEEEecCccchHHHHHHHHhcCCcEE-E--ecCcch-HHH-HHHHHhCCC
Confidence 5899999999999999988766667987 66666554432222233334444322 1 221110 001 111111112
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
++|+++.++|.
T Consensus 240 ~~Dvvid~~g~ 250 (357)
T 1zsy_A 240 QPRLALNCVGG 250 (357)
T ss_dssp CCSEEEESSCH
T ss_pred CceEEEECCCc
Confidence 58999999884
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0062 Score=53.52 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=52.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCC-hhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV-ESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~-~~~~~~~~~~~~~~~ 105 (282)
.|+++||+|+ |++|...++.+...|+. .|+.+++++++++.+.+ .+.... .|..+ .+++.+.+.++..
T Consensus 191 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~-~Vi~~~~~~~~~~~a~~----lGa~~v---i~~~~~~~~~~~~i~~~t~-- 259 (373)
T 1p0f_A 191 PGSTCAVFGL-GGVGFSAIVGCKAAGAS-RIIGVGTHKDKFPKAIE----LGATEC---LNPKDYDKPIYEVICEKTN-- 259 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSCGGGHHHHHH----TTCSEE---ECGGGCSSCHHHHHHHHTT--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEECCCHHHHHHHHH----cCCcEE---EecccccchHHHHHHHHhC--
Confidence 5899999995 99999988777678983 38888888777654332 333211 34433 1234333333322
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+.+|++|.++|.
T Consensus 260 gg~Dvvid~~g~ 271 (373)
T 1p0f_A 260 GGVDYAVECAGR 271 (373)
T ss_dssp SCBSEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 479999999985
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0095 Score=51.59 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=37.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
-.+++++|+|.|+ ||+|.++++.|++.|.. ++.+++++.-...+
T Consensus 30 ~kL~~~~VlIvGa-GGlGs~va~~La~aGVg-~ItlvD~D~Ve~SN 73 (340)
T 3rui_A 30 DIIKNTKVLLLGA-GTLGCYVSRALIAWGVR-KITFVDNGTVSYSN 73 (340)
T ss_dssp HHHHTCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECCCBCCTTS
T ss_pred HHHhCCEEEEECC-CHHHHHHHHHHHHcCCC-EEEEecCCEecccc
Confidence 4678999999987 78999999999999985 79999988755544
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0016 Score=54.99 Aligned_cols=74 Identities=22% Similarity=0.248 Sum_probs=51.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++|++++|.|+ |++|+++++.|.+.|.+ |++.+|+.++.+.+.+.. + +.+ .+ +.++ ++
T Consensus 125 ~~~~~~~v~iiGa-G~~g~aia~~L~~~g~~--V~v~~r~~~~~~~l~~~~---g--~~~--~~--~~~~---~~----- 184 (275)
T 2hk9_A 125 PEVKEKSILVLGA-GGASRAVIYALVKEGAK--VFLWNRTKEKAIKLAQKF---P--LEV--VN--SPEE---VI----- 184 (275)
T ss_dssp TTGGGSEEEEECC-SHHHHHHHHHHHHHTCE--EEEECSSHHHHHHHTTTS---C--EEE--CS--CGGG---TG-----
T ss_pred CCcCCCEEEEECc-hHHHHHHHHHHHHcCCE--EEEEECCHHHHHHHHHHc---C--Cee--eh--hHHh---hh-----
Confidence 4678999999996 79999999999999975 999999876655433322 2 211 11 2211 11
Q ss_pred HcCCccEEEECcccCC
Q 023441 104 KYGSLNLLINASGILS 119 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~ 119 (282)
...|++|++.....
T Consensus 185 --~~aDiVi~atp~~~ 198 (275)
T 2hk9_A 185 --DKVQVIVNTTSVGL 198 (275)
T ss_dssp --GGCSEEEECSSTTS
T ss_pred --cCCCEEEEeCCCCC
Confidence 25899999998653
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.028 Score=48.51 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=70.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-ccccc---ccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLK---NRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~---~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
+.+++.|+|+ |.+|.+++..|+..|.-..|++.++++++.+. ..++. ...+..+.....| .+
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~---~~---------- 69 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT---YE---------- 69 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC---GG----------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc---HH----------
Confidence 4568999996 99999999999999862249999998876654 22222 1111234433322 11
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+..-|++|.++|....| + +.-.+.+..|..-...+.+.+..+- .. ..++++|-..
T Consensus 70 -a~~~aDvVvi~ag~p~kp------G-------~~R~dL~~~N~~Iv~~i~~~I~~~~---p~------a~vlvvtNPv 125 (326)
T 3pqe_A 70 -DCKDADIVCICAGANQKP------G-------ETRLELVEKNLKIFKGIVSEVMASG---FD------GIFLVATNPV 125 (326)
T ss_dssp -GGTTCSEEEECCSCCCCT------T-------CCHHHHHHHHHHHHHHHHHHHHHTT---CC------SEEEECSSSH
T ss_pred -HhCCCCEEEEecccCCCC------C-------ccHHHHHHHHHHHHHHHHHHHHHhc---CC------eEEEEcCChH
Confidence 223689999999975311 1 1122446666655555555544431 22 2777777644
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0036 Score=51.26 Aligned_cols=72 Identities=14% Similarity=0.039 Sum_probs=50.9
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
.+.++|.|+ |.+|..+++.|.+.|. |++++++++..+... ..+.++..|.++++.++++ ...+
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~---v~vid~~~~~~~~~~-------~~~~~i~gd~~~~~~l~~a------~i~~ 71 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV---FVLAEDENVRKKVLR-------SGANFVHGDPTRVSDLEKA------NVRG 71 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE---EEEESCGGGHHHHHH-------TTCEEEESCTTCHHHHHHT------TCTT
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe---EEEEECCHHHHHHHh-------cCCeEEEcCCCCHHHHHhc------Ccch
Confidence 357899998 8999999999999884 677788776543222 2467888898888766543 1235
Q ss_pred ccEEEECcc
Q 023441 108 LNLLINASG 116 (282)
Q Consensus 108 id~lv~~ag 116 (282)
.|.+|.+.+
T Consensus 72 ad~vi~~~~ 80 (234)
T 2aef_A 72 ARAVIVDLE 80 (234)
T ss_dssp CSEEEECCS
T ss_pred hcEEEEcCC
Confidence 677777665
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0073 Score=53.45 Aligned_cols=43 Identities=19% Similarity=0.053 Sum_probs=37.7
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL 70 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~ 70 (282)
.+.|++++|+|+ |++|+.+++.+...|++ |++.+|+..+++..
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~--V~~~d~~~~~~~~~ 211 (384)
T 1l7d_A 169 TVPPARVLVFGV-GVAGLQAIATAKRLGAV--VMATDVRAATKEQV 211 (384)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSCSTTHHHH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHH
Confidence 678999999996 89999999999999986 99999988776543
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0039 Score=54.20 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=50.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhc--CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEK--NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~--G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.|+++||+|+ |++|...++.+... |++ |+.+++++++.+.+.++ +.... .|..+. ...+.++.+
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~--Vi~~~~~~~~~~~~~~l----Ga~~v---i~~~~~---~~~~~~~~~- 235 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQILKALMKNIT--IVGISRSKKHRDFALEL----GADYV---SEMKDA---ESLINKLTD- 235 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHHHHHHCTTCE--EEEECSCHHHHHHHHHH----TCSEE---ECHHHH---HHHHHHHHT-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCCE--EEEEeCCHHHHHHHHHh----CCCEE---eccccc---hHHHHHhhc-
Confidence 7899999999 89999998777777 886 99999887766543332 32211 233220 112233322
Q ss_pred cCCccEEEECccc
Q 023441 105 YGSLNLLINASGI 117 (282)
Q Consensus 105 ~~~id~lv~~ag~ 117 (282)
-.++|++|.++|.
T Consensus 236 g~g~D~vid~~g~ 248 (344)
T 2h6e_A 236 GLGASIAIDLVGT 248 (344)
T ss_dssp TCCEEEEEESSCC
T ss_pred CCCccEEEECCCC
Confidence 1269999999985
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0068 Score=53.92 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=51.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+|+ |++|...++-+...|+. .|+.+++++++++.+.++ |.... .|..+.+ +.+.+.++... .
T Consensus 213 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~-~Vi~~~~~~~~~~~~~~l----Ga~~v---i~~~~~~-~~~~i~~~t~g-~ 281 (404)
T 3ip1_A 213 PGDNVVILGG-GPIGLAAVAILKHAGAS-KVILSEPSEVRRNLAKEL----GADHV---IDPTKEN-FVEAVLDYTNG-L 281 (404)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEECSCHHHHHHHHHH----TCSEE---ECTTTSC-HHHHHHHHTTT-C
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHHc----CCCEE---EcCCCCC-HHHHHHHHhCC-C
Confidence 5899999998 99999988777778983 488888887765543322 33221 3544433 22222222111 2
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.++|.
T Consensus 282 g~D~vid~~g~ 292 (404)
T 3ip1_A 282 GAKLFLEATGV 292 (404)
T ss_dssp CCSEEEECSSC
T ss_pred CCCEEEECCCC
Confidence 59999999986
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.008 Score=53.29 Aligned_cols=81 Identities=19% Similarity=0.177 Sum_probs=52.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+|+ |++|...++.+...|+. .|+.+++++++++.+. +.+.. ..|.++.+.+.+.+.++.. -.
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~-~Vi~~~~~~~~~~~a~----~lGa~----~i~~~~~~~~~~~v~~~t~-g~ 253 (398)
T 1kol_A 185 PGSTVYVAGA-GPVGLAAAASARLLGAA-VVIVGDLNPARLAHAK----AQGFE----IADLSLDTPLHEQIAALLG-EP 253 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEEESCHHHHHHHH----HTTCE----EEETTSSSCHHHHHHHHHS-SS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCC-eEEEEcCCHHHHHHHH----HcCCc----EEccCCcchHHHHHHHHhC-CC
Confidence 5899999995 99999988766668984 4888888876655432 23442 2465554333333332221 12
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
.+|++|.++|..
T Consensus 254 g~Dvvid~~G~~ 265 (398)
T 1kol_A 254 EVDCAVDAVGFE 265 (398)
T ss_dssp CEEEEEECCCTT
T ss_pred CCCEEEECCCCc
Confidence 599999999964
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0067 Score=52.59 Aligned_cols=121 Identities=15% Similarity=0.052 Sum_probs=69.3
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcE-----EEEeecCCC--cccc-cccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGC-----VIATCRNPN--GATG-LLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~-----vi~~~r~~~--~~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
.+++||||+|.+|..++..|+..|.-.. |++.+.++. ..+. ..++..-...-.. ++....+..
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~----~~~~~~~~~----- 74 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLK----DVIATDKEE----- 74 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEE----EEEEESCHH-----
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccC----CEEEcCCcH-----
Confidence 4799999999999999999998775222 788887642 3332 2233221111111 221111111
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.+...|++|+.+|....| + +.-.+.++.|......+.+.+..+-. .+ ..++++|-.
T Consensus 75 --~~~~daDvVvitAg~prkp------G-------~tR~dll~~N~~i~~~i~~~i~~~~~---~~-----~~vivvsNP 131 (333)
T 5mdh_A 75 --IAFKDLDVAILVGSMPRRD------G-------MERKDLLKANVKIFKCQGAALDKYAK---KS-----VKVIVVGNP 131 (333)
T ss_dssp --HHTTTCSEEEECCSCCCCT------T-------CCTTTTHHHHHHHHHHHHHHHHHHSC---TT-----CEEEECSSS
T ss_pred --HHhCCCCEEEEeCCCCCCC------C-------CCHHHHHHHHHHHHHHHHHHHHHhCC---CC-----eEEEEcCCc
Confidence 2233789999999875311 1 12335577888777777776655421 11 147777664
Q ss_pred c
Q 023441 181 V 181 (282)
Q Consensus 181 ~ 181 (282)
.
T Consensus 132 v 132 (333)
T 5mdh_A 132 A 132 (333)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.003 Score=54.34 Aligned_cols=74 Identities=18% Similarity=0.105 Sum_probs=48.6
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
|+ +||+||+|++|...++.+...|++ |+.+++++++.+.+.+ .+....+ |..+.+.+ .++ ..++
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~--Vi~~~~~~~~~~~~~~----lGa~~vi---~~~~~~~~----~~~--~~~~ 211 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGYQ--VAAVSGRESTHGYLKS----LGANRIL---SRDEFAES----RPL--EKQL 211 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTCC--EEEEESCGGGHHHHHH----HTCSEEE---EGGGSSCC----CSS--CCCC
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHh----cCCCEEE---ecCCHHHH----Hhh--cCCC
Confidence 56 999999999999999888888998 9999988877654433 2333222 33322211 111 1146
Q ss_pred ccEEEECccc
Q 023441 108 LNLLINASGI 117 (282)
Q Consensus 108 id~lv~~ag~ 117 (282)
+|+++.++|.
T Consensus 212 ~d~v~d~~g~ 221 (324)
T 3nx4_A 212 WAGAIDTVGD 221 (324)
T ss_dssp EEEEEESSCH
T ss_pred ccEEEECCCc
Confidence 8888888773
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0077 Score=53.83 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=49.6
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
+..++|.|+ |-+|..+++.|.+.|.. |++++++++..+.+.+. .+.++..|.++++.++++ ...+
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~--vvvId~d~~~v~~~~~~------g~~vi~GDat~~~~L~~a------gi~~ 68 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVK--MVVLDHDPDHIETLRKF------GMKVFYGDATRMDLLESA------GAAK 68 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCC--EEEEECCHHHHHHHHHT------TCCCEESCTTCHHHHHHT------TTTT
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCC--EEEEECCHHHHHHHHhC------CCeEEEcCCCCHHHHHhc------CCCc
Confidence 356899997 78999999999999988 99999998765443221 244556666666554433 1124
Q ss_pred ccEEEECcc
Q 023441 108 LNLLINASG 116 (282)
Q Consensus 108 id~lv~~ag 116 (282)
.|.+|.+.+
T Consensus 69 A~~viv~~~ 77 (413)
T 3l9w_A 69 AEVLINAID 77 (413)
T ss_dssp CSEEEECCS
T ss_pred cCEEEECCC
Confidence 555555544
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0047 Score=54.34 Aligned_cols=81 Identities=15% Similarity=0.182 Sum_probs=51.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc-
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY- 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~- 105 (282)
.|+++||+|+ |++|...++.+...|+. .|+.+++++++.+.+.+ .|... ..|.++.+ +.+.+.+.....
T Consensus 182 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~-~Vi~~~~~~~~~~~a~~----lGa~~---vi~~~~~~-~~~~i~~~~~~~~ 251 (370)
T 4ej6_A 182 AGSTVAILGG-GVIGLLTVQLARLAGAT-TVILSTRQATKRRLAEE----VGATA---TVDPSAGD-VVEAIAGPVGLVP 251 (370)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEECSCHHHHHHHHH----HTCSE---EECTTSSC-HHHHHHSTTSSST
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHH----cCCCE---EECCCCcC-HHHHHHhhhhccC
Confidence 5899999998 99999988777778984 48888887766543322 23322 23555543 222222210011
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+++|+++.++|.
T Consensus 252 gg~Dvvid~~G~ 263 (370)
T 4ej6_A 252 GGVDVVIECAGV 263 (370)
T ss_dssp TCEEEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 379999999885
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.006 Score=53.06 Aligned_cols=106 Identities=13% Similarity=0.048 Sum_probs=62.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-ccccccc-CC-CceeEEEeeCCChhHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNR-FP-ERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~-~~-~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++++.|+|++|.+|..++..++.+|....|++.+.++++++. ..++... +. .++.+ . +| ..+++
T Consensus 7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t---~d---~~~al----- 74 (343)
T 3fi9_A 7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-T---SD---IKEAL----- 74 (343)
T ss_dssp CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-E---SC---HHHHH-----
T ss_pred CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-c---CC---HHHHh-----
Confidence 4678999999999999999999999852239999998776554 2222211 11 12221 1 12 22222
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhh
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPL 159 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 159 (282)
...|++|.++|... .+- ++-.+.+..|..-...+.+.+..+
T Consensus 75 --~dADvVvitaG~p~--------kpG-----~~R~dLl~~N~~I~~~i~~~i~~~ 115 (343)
T 3fi9_A 75 --TDAKYIVSSGGAPR--------KEG-----MTREDLLKGNAEIAAQLGKDIKSY 115 (343)
T ss_dssp --TTEEEEEECCC--------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCEEEEccCCCC--------CCC-----CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999753 110 122345667766665555555443
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0047 Score=53.10 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=49.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|+||+|++|...++.+...|++ |+..+++. +.+ ...+.+... ..|..+.+.+.+ ...
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~--vi~~~~~~-~~~----~~~~lGa~~---~i~~~~~~~~~~-------~~~ 214 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTT--VITTASKR-NHA----FLKALGAEQ---CINYHEEDFLLA-------IST 214 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCE--EEEEECHH-HHH----HHHHHTCSE---EEETTTSCHHHH-------CCS
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCE--EEEEeccc-hHH----HHHHcCCCE---EEeCCCcchhhh-------hcc
Confidence 5899999999999999999888888987 77776543 222 222233332 235555442222 224
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.++|.
T Consensus 215 g~D~v~d~~g~ 225 (321)
T 3tqh_A 215 PVDAVIDLVGG 225 (321)
T ss_dssp CEEEEEESSCH
T ss_pred CCCEEEECCCc
Confidence 79999999985
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.011 Score=52.36 Aligned_cols=81 Identities=21% Similarity=0.215 Sum_probs=52.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+|+ |++|...++.+...|+. +|+.+++++++++.+. +.+. .+ +|..+.+.+.+.+.++... .
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~-~Vi~~~~~~~~~~~a~----~lGa--~~--i~~~~~~~~~~~~~~~~~g-~ 253 (398)
T 2dph_A 185 PGSHVYIAGA-GPVGRCAAAGARLLGAA-CVIVGDQNPERLKLLS----DAGF--ET--IDLRNSAPLRDQIDQILGK-P 253 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHH----TTTC--EE--EETTSSSCHHHHHHHHHSS-S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-EEEEEcCCHHHHHHHH----HcCC--cE--EcCCCcchHHHHHHHHhCC-C
Confidence 5899999997 99999988766668982 3999998877655332 3344 22 4655433212222222211 2
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
.+|++|.++|..
T Consensus 254 g~Dvvid~~g~~ 265 (398)
T 2dph_A 254 EVDCGVDAVGFE 265 (398)
T ss_dssp CEEEEEECSCTT
T ss_pred CCCEEEECCCCc
Confidence 599999999863
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.04 Score=48.45 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=54.9
Q ss_pred ccccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHH
Q 023441 18 SSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 18 ~~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~ 97 (282)
++++..+.+.+|+++|.|+ |.+|+.+++.+.+.|.+ |++++.++.... .... + .++..|..|.+.+.++
T Consensus 2 ~~~~~~~~~~~~~IlIlG~-G~lg~~la~aa~~lG~~--viv~d~~~~~p~--~~~a----d--~~~~~~~~d~~~l~~~ 70 (377)
T 3orq_A 2 NAMNFNKLKFGATIGIIGG-GQLGKMMAQSAQKMGYK--VVVLDPSEDCPC--RYVA----H--EFIQAKYDDEKALNQL 70 (377)
T ss_dssp CCSSCCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCE--EEEEESCTTCTT--GGGS----S--EEEECCTTCHHHHHHH
T ss_pred CccccccCCCCCEEEEECC-CHHHHHHHHHHHHCCCE--EEEEECCCCChh--hhhC----C--EEEECCCCCHHHHHHH
Confidence 3444556678999999986 56899999999999987 887777654221 1111 1 3556899998888877
Q ss_pred HHHHHHHcCCccEEEE
Q 023441 98 AKSIKEKYGSLNLLIN 113 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~ 113 (282)
++. +|++..
T Consensus 71 ~~~-------~dvi~~ 79 (377)
T 3orq_A 71 GQK-------CDVITY 79 (377)
T ss_dssp HHH-------CSEEEE
T ss_pred HHh-------CCccee
Confidence 653 677643
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.018 Score=53.53 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=37.1
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
-.+++++|+|.|+ ||+|.++++.|++.|.. ++.+++++.-...+
T Consensus 322 ekL~~arVLIVGa-GGLGs~vA~~La~aGVG-~ItLvD~D~Ve~SN 365 (615)
T 4gsl_A 322 DIIKNTKVLLLGA-GTLGCYVSRALIAWGVR-KITFVDNGTVSYSN 365 (615)
T ss_dssp HHHHTCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECCCBCCTTG
T ss_pred HHHhCCeEEEECC-CHHHHHHHHHHHHcCCC-EEEEEcCCCCcccC
Confidence 3678999999987 69999999999999985 79999998755443
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0071 Score=51.55 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=51.5
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..++.|++++|.|+ |++|+++++.|...|.+ |++.+|+.++.+...+ .+. ..+ +. +++.++
T Consensus 152 ~~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~--V~~~d~~~~~~~~~~~----~g~--~~~--~~---~~l~~~----- 212 (300)
T 2rir_A 152 DYTIHGSQVAVLGL-GRTGMTIARTFAALGAN--VKVGARSSAHLARITE----MGL--VPF--HT---DELKEH----- 212 (300)
T ss_dssp SSCSTTSEEEEECC-SHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHH----TTC--EEE--EG---GGHHHH-----
T ss_pred CCCCCCCEEEEEcc-cHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHH----CCC--eEE--ch---hhHHHH-----
Confidence 35789999999996 99999999999999986 9999998755432221 122 222 11 223222
Q ss_pred HHcCCccEEEECccc
Q 023441 103 EKYGSLNLLINASGI 117 (282)
Q Consensus 103 ~~~~~id~lv~~ag~ 117 (282)
+...|++++++..
T Consensus 213 --l~~aDvVi~~~p~ 225 (300)
T 2rir_A 213 --VKDIDICINTIPS 225 (300)
T ss_dssp --STTCSEEEECCSS
T ss_pred --hhCCCEEEECCCh
Confidence 2468999999874
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.027 Score=49.49 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=55.5
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeC------------CChhH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDL------------TVEST 93 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dl------------s~~~~ 93 (282)
+.+++++|+|+ |.+|..+++.+...|++ |++.+|+..+++.+.++ +. .++..|+ ++ +.
T Consensus 182 v~~~kV~ViG~-G~iG~~aa~~a~~lGa~--V~v~D~~~~~l~~~~~l----Ga--~~~~l~~~~~~~~gya~~~~~-~~ 251 (381)
T 3p2y_A 182 VKPASALVLGV-GVAGLQALATAKRLGAK--TTGYDVRPEVAEQVRSV----GA--QWLDLGIDAAGEGGYARELSE-AE 251 (381)
T ss_dssp ECCCEEEEESC-SHHHHHHHHHHHHHTCE--EEEECSSGGGHHHHHHT----TC--EECCCC-------------CH-HH
T ss_pred cCCCEEEEECc-hHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHc----CC--eEEeccccccccccchhhhhH-HH
Confidence 57899999999 79999999999999987 99999998876654432 22 2222221 11 11
Q ss_pred HHHHHHHHHHHcCCccEEEECccc
Q 023441 94 IEASAKSIKEKYGSLNLLINASGI 117 (282)
Q Consensus 94 ~~~~~~~~~~~~~~id~lv~~ag~ 117 (282)
..+-...+.+.....|++|.++..
T Consensus 252 ~~~~~~~l~e~l~~aDIVI~tv~i 275 (381)
T 3p2y_A 252 RAQQQQALEDAITKFDIVITTALV 275 (381)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCC
T ss_pred HhhhHHHHHHHHhcCCEEEECCCC
Confidence 222334444555689999998754
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0083 Score=50.97 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=36.1
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA 67 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~ 67 (282)
.++.||+++|.| .|+||+++++.|...|.+ |++.+|+.++.
T Consensus 151 ~~l~g~~v~IiG-~G~iG~~~a~~l~~~G~~--V~~~dr~~~~~ 191 (293)
T 3d4o_A 151 FTIHGANVAVLG-LGRVGMSVARKFAALGAK--VKVGARESDLL 191 (293)
T ss_dssp SCSTTCEEEEEC-CSHHHHHHHHHHHHTTCE--EEEEESSHHHH
T ss_pred CCCCCCEEEEEe-eCHHHHHHHHHHHhCCCE--EEEEECCHHHH
Confidence 578999999999 489999999999999986 99999987654
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.027 Score=49.20 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=54.9
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
...+++++|+|.|+ ||+|.++++.|++.|.. ++.+++++.-+..++.... .+-..|+.. ...+.+.+.+.
T Consensus 113 q~~L~~~~VlvvG~-GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~-------l~~~~diG~-~Ka~~~~~~l~ 182 (353)
T 3h5n_A 113 QDKLKNAKVVILGC-GGIGNHVSVILATSGIG-EIILIDNDQIENTNLTRQV-------LFSEDDVGK-NKTEVIKRELL 182 (353)
T ss_dssp HHHHHTCEEEEECC-SHHHHHHHHHHHHHTCS-EEEEEECCBCCGGGGGTCT-------TCCGGGTTS-BHHHHHHHHHH
T ss_pred HHHHhCCeEEEECC-CHHHHHHHHHHHhCCCC-eEEEECCCcCccccccccc-------CCChHHCCC-hHHHHHHHHHH
Confidence 45677899999998 89999999999999985 7999999876655433221 111124443 23455555555
Q ss_pred HHcCCccEEEECcc
Q 023441 103 EKYGSLNLLINASG 116 (282)
Q Consensus 103 ~~~~~id~lv~~ag 116 (282)
+..+.+++-.++..
T Consensus 183 ~~np~v~v~~~~~~ 196 (353)
T 3h5n_A 183 KRNSEISVSEIALN 196 (353)
T ss_dssp HHCTTSEEEEEECC
T ss_pred HHCCCCeEEEeecc
Confidence 55555555554443
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.011 Score=50.50 Aligned_cols=69 Identities=12% Similarity=-0.055 Sum_probs=44.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+|+ |++|...++-+...|++ |+.++ ++++.+.+.+ .+.... + | |.+++ .+
T Consensus 142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~--Vi~~~-~~~~~~~~~~----lGa~~v-~--~--d~~~v----------~~ 198 (315)
T 3goh_A 142 KQREVLIVGF-GAVNNLLTQMLNNAGYV--VDLVS-ASLSQALAAK----RGVRHL-Y--R--EPSQV----------TQ 198 (315)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCE--EEEEC-SSCCHHHHHH----HTEEEE-E--S--SGGGC----------CS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCE--EEEEE-ChhhHHHHHH----cCCCEE-E--c--CHHHh----------CC
Confidence 5899999999 99999988777778986 88888 6666544333 233222 2 2 22222 34
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
++|+++.++|..
T Consensus 199 g~Dvv~d~~g~~ 210 (315)
T 3goh_A 199 KYFAIFDAVNSQ 210 (315)
T ss_dssp CEEEEECC----
T ss_pred CccEEEECCCch
Confidence 799999999863
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.01 Score=52.09 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=50.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|+++||+|+ |++|...++.+...|+. .|+.+++++++.+.+.++ +.... .|..+.+ +.+.+.+... +
T Consensus 190 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~-~Vi~~~~~~~~~~~a~~l----Ga~~v---i~~~~~~-~~~~~~~~~~--g 257 (371)
T 1f8f_A 190 PASSFVTWGA-GAVGLSALLAAKVCGAS-IIIAVDIVESRLELAKQL----GATHV---INSKTQD-PVAAIKEITD--G 257 (371)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHH----TCSEE---EETTTSC-HHHHHHHHTT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEECCCHHHHHHHHHc----CCCEE---ecCCccC-HHHHHHHhcC--C
Confidence 4889999995 99999988777678984 488888887765543322 33211 3444433 2222222211 3
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.++|.
T Consensus 258 g~D~vid~~g~ 268 (371)
T 1f8f_A 258 GVNFALESTGS 268 (371)
T ss_dssp CEEEEEECSCC
T ss_pred CCcEEEECCCC
Confidence 69999999985
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.04 Score=46.70 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=33.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR 62 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r 62 (282)
.+++||+++|.|.++-+|+.+|+.|+..|+. |.++.|
T Consensus 161 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAt--Vtv~~~ 197 (300)
T 4a26_A 161 IEMAGKRAVVLGRSNIVGAPVAALLMKENAT--VTIVHS 197 (300)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCE--EEEECT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCe--EEEEeC
Confidence 6789999999999999999999999999997 887766
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0089 Score=52.06 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=50.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCC-CcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKND-KGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~-~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.|+++||+|+ |++|...++.+...|+ + |+.+++++++++.+.++ +... ..|..+.+ + .+.+++..
T Consensus 166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~--Vi~~~~~~~~~~~~~~l----Ga~~---vi~~~~~~-~---~~~v~~~t 231 (352)
T 3fpc_A 166 LGDTVCVIGI-GPVGLMSVAGANHLGAGR--IFAVGSRKHCCDIALEY----GATD---IINYKNGD-I---VEQILKAT 231 (352)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSS--EEEECCCHHHHHHHHHH----TCCE---EECGGGSC-H---HHHHHHHT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcE--EEEECCCHHHHHHHHHh----CCce---EEcCCCcC-H---HHHHHHHc
Confidence 5899999985 9999998877777898 5 88888887665433332 3321 13444333 2 22333332
Q ss_pred -C-CccEEEECccc
Q 023441 106 -G-SLNLLINASGI 117 (282)
Q Consensus 106 -~-~id~lv~~ag~ 117 (282)
+ .+|+++.++|.
T Consensus 232 ~g~g~D~v~d~~g~ 245 (352)
T 3fpc_A 232 DGKGVDKVVIAGGD 245 (352)
T ss_dssp TTCCEEEEEECSSC
T ss_pred CCCCCCEEEECCCC
Confidence 2 59999999986
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0097 Score=51.27 Aligned_cols=41 Identities=29% Similarity=0.308 Sum_probs=34.9
Q ss_pred Cc-EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc
Q 023441 28 GG-VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL 70 (282)
Q Consensus 28 gk-~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~ 70 (282)
|+ ++||+||+|++|...++.+...|++ |+.+++++++++.+
T Consensus 150 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~--vi~~~~~~~~~~~~ 191 (330)
T 1tt7_A 150 EKGSVLVTGATGGVGGIAVSMLNKRGYD--VVASTGNREAADYL 191 (330)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCC--EEEEESSSSTHHHH
T ss_pred CCceEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHH
Confidence 54 8999999999999999888888988 99999987776544
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.038 Score=47.65 Aligned_cols=119 Identities=11% Similarity=0.059 Sum_probs=64.2
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccc-cccccC--CCceeEEEeeCCChhHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL-DLKNRF--PERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~-~~~~~~--~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
-+++++.|+|+ |.+|.+++..|+..|.--.|++.++++++++... ++.... -..+.+..- +.+
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~---~~~---------- 72 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSA---EYS---------- 72 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEEC---CGG----------
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEEC---cHH----------
Confidence 35678999996 9999999999999986335999999877665322 222111 113333321 222
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+...|++|+++|....| + +.-.+.++.|..-...+.+.+..+ ... ..++++|-..
T Consensus 73 -a~~~aDiVvi~ag~~~kp------G-------~tR~dL~~~N~~I~~~i~~~i~~~---~p~------a~ilvvtNPv 128 (326)
T 3vku_A 73 -DAKDADLVVITAGAPQKP------G-------ETRLDLVNKNLKILKSIVDPIVDS---GFN------GIFLVAANPV 128 (326)
T ss_dssp -GGTTCSEEEECCCCC-----------------------------CHHHHHHHHHTT---TCC------SEEEECSSSH
T ss_pred -HhcCCCEEEECCCCCCCC------C-------chHHHHHHHHHHHHHHHHHHHHhc---CCc------eEEEEccCch
Confidence 234789999999975311 1 112244666665555555554432 122 2677777644
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.021 Score=49.45 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=52.3
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
..|++++|+|+ |++|...+..+...|+. .++.+++++++++.+ ++.|.... .|.++.+ ..+....+.+ .
T Consensus 159 ~~g~~VlV~Ga-G~vG~~aiq~ak~~G~~-~vi~~~~~~~k~~~a----~~lGa~~~---i~~~~~~-~~~~~~~~~~-~ 227 (346)
T 4a2c_A 159 CENKNVIIIGA-GTIGLLAIQCAVALGAK-SVTAIDISSEKLALA----KSFGAMQT---FNSSEMS-APQMQSVLRE-L 227 (346)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCS-EEEEEESCHHHHHHH----HHTTCSEE---EETTTSC-HHHHHHHHGG-G
T ss_pred CCCCEEEEECC-CCcchHHHHHHHHcCCc-EEEEEechHHHHHHH----HHcCCeEE---EeCCCCC-HHHHHHhhcc-c
Confidence 36899999987 89999999888888987 456777777665433 23344322 3444433 2333333322 2
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
...|+++.++|.
T Consensus 228 ~g~d~v~d~~G~ 239 (346)
T 4a2c_A 228 RFNQLILETAGV 239 (346)
T ss_dssp CSSEEEEECSCS
T ss_pred CCcccccccccc
Confidence 468999999885
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.018 Score=52.00 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=51.8
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++++||+++|.|. |+.|.++|+.|+++|++ |.+.+++........+.+.+.+ +.+....- ++.+
T Consensus 4 ~~~~~~k~v~viG~-G~sG~s~A~~l~~~G~~--V~~~D~~~~~~~~~~~~L~~~g--i~~~~g~~--~~~~-------- 68 (451)
T 3lk7_A 4 ITTFENKKVLVLGL-ARSGEAAARLLAKLGAI--VTVNDGKPFDENPTAQSLLEEG--IKVVCGSH--PLEL-------- 68 (451)
T ss_dssp CCTTTTCEEEEECC-TTTHHHHHHHHHHTTCE--EEEEESSCGGGCHHHHHHHHTT--CEEEESCC--CGGG--------
T ss_pred hhhcCCCEEEEEee-CHHHHHHHHHHHhCCCE--EEEEeCCcccCChHHHHHHhCC--CEEEECCC--hHHh--------
Confidence 46788999999998 78899999999999988 9998886642212222233223 33332211 1111
Q ss_pred HHcCC-ccEEEECcccCC
Q 023441 103 EKYGS-LNLLINASGILS 119 (282)
Q Consensus 103 ~~~~~-id~lv~~ag~~~ 119 (282)
+.. .|.+|.+.|+..
T Consensus 69 --~~~~~d~vv~spgi~~ 84 (451)
T 3lk7_A 69 --LDEDFCYMIKNPGIPY 84 (451)
T ss_dssp --GGSCEEEEEECTTSCT
T ss_pred --hcCCCCEEEECCcCCC
Confidence 123 899999999853
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.051 Score=48.19 Aligned_cols=45 Identities=20% Similarity=0.104 Sum_probs=38.2
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccc
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD 72 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~ 72 (282)
.+.+.+++|+|+ |.+|..+++.+...|++ |++.+++..+++.+.+
T Consensus 187 ~v~~~kV~ViG~-G~iG~~aa~~a~~lGa~--V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 187 TVPAAKIFVMGA-GVAGLQAIATARRLGAV--VSATDVRPAAKEQVAS 231 (405)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSSTTHHHHHHH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCE--EEEEcCCHHHHHHHHH
Confidence 357889999999 79999999999999987 9999999887655433
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.01 Score=49.52 Aligned_cols=70 Identities=30% Similarity=0.265 Sum_probs=50.4
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++| +++|.|+ |++|+++++.|.+.|.+ |.+.+|+.++.+.+.+.. +.. ..+.+++
T Consensus 113 ~~l~~-~v~iiG~-G~~g~~~a~~l~~~g~~--v~v~~r~~~~~~~l~~~~---~~~-------~~~~~~~--------- 169 (263)
T 2d5c_A 113 IPLKG-PALVLGA-GGAGRAVAFALREAGLE--VWVWNRTPQRALALAEEF---GLR-------AVPLEKA--------- 169 (263)
T ss_dssp CCCCS-CEEEECC-SHHHHHHHHHHHHTTCC--EEEECSSHHHHHHHHHHH---TCE-------ECCGGGG---------
T ss_pred CCCCC-eEEEECC-cHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHh---ccc-------hhhHhhc---------
Confidence 46889 9999996 77999999999999986 999999876655443332 111 1222211
Q ss_pred HcCCccEEEECcccC
Q 023441 104 KYGSLNLLINASGIL 118 (282)
Q Consensus 104 ~~~~id~lv~~ag~~ 118 (282)
...|++|++....
T Consensus 170 --~~~Divi~~tp~~ 182 (263)
T 2d5c_A 170 --REARLLVNATRVG 182 (263)
T ss_dssp --GGCSEEEECSSTT
T ss_pred --cCCCEEEEccCCC
Confidence 2589999999875
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.017 Score=50.00 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=48.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.|++++|+|+ |++|...++-+... |.+ |+.+++++++++.+.+ .+.... .|-.+ +..+.+.+....
T Consensus 171 ~g~~vlv~Ga-G~vG~~a~qla~~~g~~~--Vi~~~~~~~~~~~~~~----lGa~~~---i~~~~--~~~~~v~~~t~g- 237 (345)
T 3jv7_A 171 PGSTAVVIGV-GGLGHVGIQILRAVSAAR--VIAVDLDDDRLALARE----VGADAA---VKSGA--GAADAIRELTGG- 237 (345)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCE--EEEEESCHHHHHHHHH----TTCSEE---EECST--THHHHHHHHHGG-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCE--EEEEcCCHHHHHHHHH----cCCCEE---EcCCC--cHHHHHHHHhCC-
Confidence 5899999998 99999987655556 444 9999888876654332 343322 23332 222222222221
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
..+|+++.++|.
T Consensus 238 ~g~d~v~d~~G~ 249 (345)
T 3jv7_A 238 QGATAVFDFVGA 249 (345)
T ss_dssp GCEEEEEESSCC
T ss_pred CCCeEEEECCCC
Confidence 269999999985
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.071 Score=43.96 Aligned_cols=78 Identities=12% Similarity=0.197 Sum_probs=55.1
Q ss_pred EEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
+++|.|++|.+|+.+++.+.+. |.+ |+........++. .+.. .+. +..|+|.++...+.+..+.+. ++
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~e--lva~~d~~~dl~~---~~~~---~~D-vvIDfT~p~a~~~~~~~a~~~--g~ 70 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLT--LSAELDAGDPLSL---LTDG---NTE-VVIDFTHPDVVMGNLEFLIDN--GI 70 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCE--EEEEECTTCCTHH---HHHT---TCC-EEEECSCTTTHHHHHHHHHHT--TC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCE--EEEEEccCCCHHH---Hhcc---CCc-EEEEccChHHHHHHHHHHHHc--CC
Confidence 5899999999999999998866 655 5544433322222 2211 122 668999999998888877665 68
Q ss_pred cEEEECcccC
Q 023441 109 NLLINASGIL 118 (282)
Q Consensus 109 d~lv~~ag~~ 118 (282)
++++-.+|..
T Consensus 71 ~~VigTTG~~ 80 (245)
T 1p9l_A 71 HAVVGTTGFT 80 (245)
T ss_dssp EEEECCCCCC
T ss_pred CEEEcCCCCC
Confidence 9999888854
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.095 Score=45.50 Aligned_cols=125 Identities=12% Similarity=0.024 Sum_probs=58.8
Q ss_pred cchhHHHhhhhhhhhccccccccccCcEEEEecCCCchhHHHHHHHHhcCC-----CcEEEEeecCCCc--cccc-cccc
Q 023441 3 NSLFAFRSIRKVAFTSSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKND-----KGCVIATCRNPNG--ATGL-LDLK 74 (282)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~-----~~~vi~~~r~~~~--~~~~-~~~~ 74 (282)
|+..-++-+....++. -+++.-+|.|+||+|+||..++..|+.... ...+.+.+.++.. ++.. .++.
T Consensus 4 ~~~~~~~~~~~~~~~~-----~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~ 78 (345)
T 4h7p_A 4 HHHHHMGTLEAQTQGP-----GSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELE 78 (345)
T ss_dssp -----------------------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHH
T ss_pred ccccccccccccccCC-----CCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhh
Confidence 4444455555544333 333445899999999999999998887532 1237777775532 2222 2222
Q ss_pred c-cCCCceeEEEeeCCChhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHH
Q 023441 75 N-RFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVI 153 (282)
Q Consensus 75 ~-~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~ 153 (282)
. .++.....+.. +|. . +.+..-|++|..+|....|. .+-.+.++.|..=.-.+.
T Consensus 79 ~~~~~~~~~~~~~--~~~---~-------~a~~~advVvi~aG~prkpG-------------mtR~DLl~~Na~I~~~~~ 133 (345)
T 4h7p_A 79 DCAFPLLDKVVVT--ADP---R-------VAFDGVAIAIMCGAFPRKAG-------------MERKDLLEMNARIFKEQG 133 (345)
T ss_dssp HTTCTTEEEEEEE--SCH---H-------HHTTTCSEEEECCCCCCCTT-------------CCHHHHHHHHHHHHHHHH
T ss_pred hcCccCCCcEEEc--CCh---H-------HHhCCCCEEEECCCCCCCCC-------------CCHHHHHHHhHHHHHHHH
Confidence 1 11222222211 121 1 12347899999999865211 123345667765554444
Q ss_pred HHhh
Q 023441 154 KHMS 157 (282)
Q Consensus 154 ~~~~ 157 (282)
+.+.
T Consensus 134 ~~i~ 137 (345)
T 4h7p_A 134 EAIA 137 (345)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=95.18 E-value=0.12 Score=44.50 Aligned_cols=122 Identities=16% Similarity=0.093 Sum_probs=73.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc-cccccc--CCCceeEEEeeCCChhHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL-LDLKNR--FPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~-~~~~~~--~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
.+...+++.|+|+ |.+|..++..|+.+|.-..|++.++++++++.. .++... +......+.. .|.++
T Consensus 15 ~~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~--~d~~~------- 84 (331)
T 4aj2_A 15 EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS--KDYSV------- 84 (331)
T ss_dssp --CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC--SSGGG-------
T ss_pred ccCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc--CCHHH-------
Confidence 3456789999997 999999999999998633599999987766542 222211 1112222221 23222
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+..-|++|.++|....| + +.-.+.++.|..-...+.+.+..+ ... ..++++|-.
T Consensus 85 ----~~~aDiVvi~aG~~~kp------G-------~tR~dL~~~N~~I~~~i~~~i~~~---~p~------a~vlvvtNP 138 (331)
T 4aj2_A 85 ----TANSKLVIITAGARQQE------G-------ESRLNLVQRNVNIFKFIIPNVVKY---SPQ------CKLLIVSNP 138 (331)
T ss_dssp ----GTTEEEEEECCSCCCCT------T-------CCGGGGHHHHHHHHHHHHHHHHHH---CTT------CEEEECSSS
T ss_pred ----hCCCCEEEEccCCCCCC------C-------ccHHHHHHHHHHHHHHHHHHHHHH---CCC------eEEEEecCh
Confidence 23789999999976411 1 112345677766655566655543 222 277777765
Q ss_pred c
Q 023441 181 V 181 (282)
Q Consensus 181 ~ 181 (282)
.
T Consensus 139 v 139 (331)
T 4aj2_A 139 V 139 (331)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.01 Score=47.57 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=33.5
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL 70 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~ 70 (282)
+++|+||+|.+|.++++.|++.|.+ |++.+|++++.+..
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~--V~~~~r~~~~~~~~ 40 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHE--IVVGSRREEKAEAK 40 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCE--EEEEESSHHHHHHH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHH
Confidence 5889999999999999999999976 88999987665443
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.024 Score=47.72 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=34.5
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN 63 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~ 63 (282)
..+++||+++|.|.++-+|+.+|+.|+.+|+. |.++.|.
T Consensus 155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAt--Vtv~h~~ 193 (285)
T 3p2o_A 155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGAT--VSVCHIK 193 (285)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCE--EEEECTT
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCe--EEEEeCC
Confidence 36789999999999999999999999999997 7777653
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.055 Score=43.96 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=34.1
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN 65 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~ 65 (282)
.++++||++||.||+ .+|..-++.|++.|++ |++++.+..
T Consensus 26 fl~L~gk~VLVVGgG-~va~~ka~~Ll~~GA~--VtVvap~~~ 65 (223)
T 3dfz_A 26 MLDLKGRSVLVVGGG-TIATRRIKGFLQEGAA--ITVVAPTVS 65 (223)
T ss_dssp EECCTTCCEEEECCS-HHHHHHHHHHGGGCCC--EEEECSSCC
T ss_pred EEEcCCCEEEEECCC-HHHHHHHHHHHHCCCE--EEEECCCCC
Confidence 367899999999974 7899999999999998 777776543
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.12 Score=44.26 Aligned_cols=118 Identities=13% Similarity=0.093 Sum_probs=66.3
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-ccccccc--CCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNR--FPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~--~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
..++.|+|+ |.+|..++..|+..|.-..|++.+.++++++. ..++... +..++.+. . ++.++
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~--~~~~a----------- 71 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY-A--GDYSD----------- 71 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----CGGG-----------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEE-E--CCHHH-----------
Confidence 357889998 99999999999999862249999999877664 2232221 11122222 1 22222
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+...|++|.++|... .+ . ..-.+.+..|..-...+.+.+.++ ... ..++++|-..+
T Consensus 72 ~~~aDvVii~~g~p~--------k~--g---~~r~dl~~~n~~i~~~i~~~i~~~---~p~------a~viv~tNPv~ 127 (318)
T 1y6j_A 72 VKDCDVIVVTAGANR--------KP--G---ETRLDLAKKNVMIAKEVTQNIMKY---YNH------GVILVVSNPVD 127 (318)
T ss_dssp GTTCSEEEECCCC-------------------CHHHHHHHHHHHHHHHHHHHHHH---CCS------CEEEECSSSHH
T ss_pred hCCCCEEEEcCCCCC--------CC--C---cCHHHHHHhhHHHHHHHHHHHHHh---CCC------cEEEEecCcHH
Confidence 347899999999753 11 0 112234666666666666665554 222 26666665443
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.025 Score=54.80 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=48.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc-
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY- 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~- 105 (282)
.|++|||.||+||+|.+.++-....|++ |+.++++. +.+.+. .+.... .|-.+.+ + .+.+++..
T Consensus 345 ~G~~VLI~gaaGgvG~~aiqlAk~~Ga~--V~~t~~~~-k~~~l~-----lga~~v---~~~~~~~-~---~~~i~~~t~ 409 (795)
T 3slk_A 345 PGESLLVHSAAGGVGMAAIQLARHLGAE--VYATASED-KWQAVE-----LSREHL---ASSRTCD-F---EQQFLGATG 409 (795)
T ss_dssp TTCCEEEESTTBHHHHHHHHHHHHTTCC--EEEECCGG-GGGGSC-----SCGGGE---ECSSSST-H---HHHHHHHSC
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHcCCE--EEEEeChH-Hhhhhh-----cChhhe---eecCChh-H---HHHHHHHcC
Confidence 5899999999999999988777778998 88887655 332221 232221 2334333 2 22333332
Q ss_pred -CCccEEEECccc
Q 023441 106 -GSLNLLINASGI 117 (282)
Q Consensus 106 -~~id~lv~~ag~ 117 (282)
..+|+++++.|.
T Consensus 410 g~GvDvVld~~gg 422 (795)
T 3slk_A 410 GRGVDVVLNSLAG 422 (795)
T ss_dssp SSCCSEEEECCCT
T ss_pred CCCeEEEEECCCc
Confidence 259999998864
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.12 Score=44.55 Aligned_cols=119 Identities=14% Similarity=-0.012 Sum_probs=68.1
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc-cccccc---CCCceeEEEeeCCChhHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL-LDLKNR---FPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~-~~~~~~---~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
++.+++.|+|+ |.+|.+++..|+..|.. .|++.++++++.+.. .++... .+....+... +|.++
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t--~d~~a-------- 72 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGA--NDYAA-------- 72 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE--SSGGG--------
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEe--CCHHH--------
Confidence 34568999998 99999999999999872 499999999876532 222211 0112222211 12222
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
+..-|++|.++|....+ + ..-.+.+..|..-...+.+.+..+- .. ..++++|-..
T Consensus 73 ---~~~aDiVIiaag~p~k~------G-------~~R~dl~~~N~~i~~~i~~~i~~~~---p~------a~iivvtNPv 127 (324)
T 3gvi_A 73 ---IEGADVVIVTAGVPRKP------G-------MSRDDLLGINLKVMEQVGAGIKKYA---PE------AFVICITNPL 127 (324)
T ss_dssp ---GTTCSEEEECCSCCCC------------------CHHHHHHHHHHHHHHHHHHHHC---TT------CEEEECCSSH
T ss_pred ---HCCCCEEEEccCcCCCC------C-------CCHHHHHHhhHHHHHHHHHHHHHHC---CC------eEEEecCCCc
Confidence 23689999999975311 1 0122345556555555555544331 22 2777777644
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.16 Score=40.66 Aligned_cols=78 Identities=9% Similarity=0.152 Sum_probs=50.2
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
...+.++++.|.| .|.+|.+++..|++.|.+ |++.+|+++. .. ...+.++.+- ...++++++++.
T Consensus 14 ~~~~~~~~I~iiG-~G~mG~~la~~l~~~g~~--V~~~~~~~~~-------~~--~aD~vi~av~---~~~~~~v~~~l~ 78 (209)
T 2raf_A 14 NLYFQGMEITIFG-KGNMGQAIGHNFEIAGHE--VTYYGSKDQA-------TT--LGEIVIMAVP---YPALAALAKQYA 78 (209)
T ss_dssp ------CEEEEEC-CSHHHHHHHHHHHHTTCE--EEEECTTCCC-------SS--CCSEEEECSC---HHHHHHHHHHTH
T ss_pred ccccCCCEEEEEC-CCHHHHHHHHHHHHCCCE--EEEEcCCHHH-------hc--cCCEEEEcCC---cHHHHHHHHHHH
Confidence 3456778999999 799999999999999987 8888988761 11 2345555443 566777777776
Q ss_pred HHcCCccEEEECcc
Q 023441 103 EKYGSLNLLINASG 116 (282)
Q Consensus 103 ~~~~~id~lv~~ag 116 (282)
..+. =.+++.++.
T Consensus 79 ~~~~-~~~vi~~~~ 91 (209)
T 2raf_A 79 TQLK-GKIVVDITN 91 (209)
T ss_dssp HHHT-TSEEEECCC
T ss_pred HhcC-CCEEEEECC
Confidence 5544 234555443
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.34 Score=41.41 Aligned_cols=117 Identities=17% Similarity=0.212 Sum_probs=68.5
Q ss_pred EEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccc-cccccccCCCceeEEEe-eCCChhHHHHHHHHHHHHcC
Q 023441 30 VSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATG-LLDLKNRFPERLDVLQL-DLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~-~~~~~~~~~~~v~~~~~-Dls~~~~~~~~~~~~~~~~~ 106 (282)
++.|+||+|.+|.+++..|+.+ +.-..+++.+.++ +.+. ..++.. ....+.+... .-.+.+++ .
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~-~~~~~~v~~~~~~~~~~~~-----------~ 68 (312)
T 3hhp_A 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSH-IPTAVKIKGFSGEDATPAL-----------E 68 (312)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHT-SCSSEEEEEECSSCCHHHH-----------T
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhC-CCCCceEEEecCCCcHHHh-----------C
Confidence 5789999999999999999886 5433599999987 3332 333332 2222222211 11122222 3
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
..|++|.++|....| + .+-.+.++.|..-...+.+.+..+ ... ..++++|-..
T Consensus 69 ~aDivii~ag~~rkp------G-------~~R~dll~~N~~I~~~i~~~i~~~---~p~------a~vlvvtNPv 121 (312)
T 3hhp_A 69 GADVVLISAGVARKP------G-------MDRSDLFNVNAGIVKNLVQQVAKT---CPK------ACIGIITNPV 121 (312)
T ss_dssp TCSEEEECCSCSCCT------T-------CCHHHHHHHHHHHHHHHHHHHHHH---CTT------SEEEECSSCH
T ss_pred CCCEEEEeCCCCCCC------C-------CCHHHHHHHHHHHHHHHHHHHHHH---CCC------cEEEEecCcc
Confidence 799999999975411 1 123355677776666666655543 122 2677776643
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.1 Score=43.87 Aligned_cols=39 Identities=21% Similarity=0.028 Sum_probs=32.8
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL 70 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~ 70 (282)
+++.|.|+ |.+|..+|..|++.|.+ |++.+|+++.++..
T Consensus 5 ~kV~VIGa-G~mG~~iA~~la~~G~~--V~l~d~~~~~~~~~ 43 (283)
T 4e12_A 5 TNVTVLGT-GVLGSQIAFQTAFHGFA--VTAYDINTDALDAA 43 (283)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSSHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCe--EEEEeCCHHHHHHH
Confidence 57788875 78999999999999987 99999998766543
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.039 Score=47.70 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=48.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|+|+ +++|...+..++..|.. +|+.+++++++++... +.+.... .|-++.+..++ +++..+
T Consensus 163 ~g~~VlV~Ga-G~~g~~a~~~a~~~~g~-~Vi~~~~~~~r~~~~~----~~Ga~~~---i~~~~~~~~~~----v~~~t~ 229 (348)
T 4eez_A 163 PGDWQVIFGA-GGLGNLAIQYAKNVFGA-KVIAVDINQDKLNLAK----KIGADVT---INSGDVNPVDE----IKKITG 229 (348)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTSCC-EEEEEESCHHHHHHHH----HTTCSEE---EEC-CCCHHHH----HHHHTT
T ss_pred CCCEEEEEcC-CCccHHHHHHHHHhCCC-EEEEEECcHHHhhhhh----hcCCeEE---EeCCCCCHHHH----hhhhcC
Confidence 5899999987 77888777777766442 4999999887654332 2233322 35555443333 222222
Q ss_pred --CccEEEECccc
Q 023441 107 --SLNLLINASGI 117 (282)
Q Consensus 107 --~id~lv~~ag~ 117 (282)
.+|.++.+++.
T Consensus 230 g~g~d~~~~~~~~ 242 (348)
T 4eez_A 230 GLGVQSAIVCAVA 242 (348)
T ss_dssp SSCEEEEEECCSC
T ss_pred CCCceEEEEeccC
Confidence 48888888875
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=94.52 E-value=0.44 Score=35.40 Aligned_cols=84 Identities=23% Similarity=0.182 Sum_probs=54.1
Q ss_pred CcEEEEecCC---CchhHHHHHHHHhcCCCcEEEEeecCCCcccc--cccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 28 GGVSLVQGAS---RGIGLEFAKQLLEKNDKGCVIATCRNPNGATG--LLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 28 gk~vlItGas---~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~--~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
-+++.|.|+| +.+|..+++.|.+.|++ |+...++.++... ......+....+..+-.=+. .+.+.++++++.
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~--V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~~~~~ 90 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFE--VLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAKEAV 90 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTCSEETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCE--EEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHHHHHH
Confidence 4689999997 78899999999999986 7777766543321 22222232334444433334 577788887776
Q ss_pred HHcCCccEEEECcc
Q 023441 103 EKYGSLNLLINASG 116 (282)
Q Consensus 103 ~~~~~id~lv~~ag 116 (282)
+. .+..++..++
T Consensus 91 ~~--g~~~i~~~~~ 102 (138)
T 1y81_A 91 EA--GFKKLWFQPG 102 (138)
T ss_dssp HT--TCCEEEECTT
T ss_pred Hc--CCCEEEEcCc
Confidence 63 4566776664
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.23 Score=42.63 Aligned_cols=117 Identities=15% Similarity=-0.016 Sum_probs=68.5
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC----CCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF----PERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~----~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++.|+|+ |.+|.+++..|+..|.. .|++.++++++.+.....+... +....+... +|.++
T Consensus 5 ~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t--~d~~a---------- 70 (321)
T 3p7m_A 5 RKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGT--NDYKD---------- 70 (321)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCGGG----------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEc--CCHHH----------
Confidence 467888995 99999999999998872 4999999988765322222211 112222211 12222
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
+..-|++|.++|....| + . .-.+.+..|..-...+.+.+..+- .. ..++++|-..
T Consensus 71 -~~~aDvVIi~ag~p~k~------G----~---~R~dl~~~N~~i~~~i~~~i~~~~---p~------a~vivvtNPv 125 (321)
T 3p7m_A 71 -LENSDVVIVTAGVPRKP------G----M---SRDDLLGINIKVMQTVGEGIKHNC---PN------AFVICITNPL 125 (321)
T ss_dssp -GTTCSEEEECCSCCCCT------T----C---CHHHHHHHHHHHHHHHHHHHHHHC---TT------CEEEECCSSH
T ss_pred -HCCCCEEEEcCCcCCCC------C----C---CHHHHHHHhHHHHHHHHHHHHHHC---CC------cEEEEecCch
Confidence 23689999999975411 1 1 122345566655555555554432 22 2677776544
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.11 Score=43.93 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=58.7
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccc-cc------cCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL-KN------RFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~-~~------~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
+++.|.| .|-+|..+++.|++.|.+ |++.+|++++.+.+.+. .. +.-. ..++-.=+.+...++++++.+
T Consensus 16 ~~I~vIG-~G~mG~~~A~~l~~~G~~--V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l 91 (296)
T 3qha_A 16 LKLGYIG-LGNMGAPMATRMTEWPGG--VTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVVGEL 91 (296)
T ss_dssp CCEEEEC-CSTTHHHHHHHHTTSTTC--EEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHHH
T ss_pred CeEEEEC-cCHHHHHHHHHHHHCCCe--EEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHHH
Confidence 4677776 688999999999999988 99999999876643321 00 0011 344445556677788888887
Q ss_pred HHHcCCccEEEECccc
Q 023441 102 KEKYGSLNLLINASGI 117 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~ 117 (282)
.+...+=.++|++...
T Consensus 92 ~~~l~~g~ivv~~st~ 107 (296)
T 3qha_A 92 AGHAKPGTVIAIHSTI 107 (296)
T ss_dssp HTTCCTTCEEEECSCC
T ss_pred HHhcCCCCEEEEeCCC
Confidence 7765555667776654
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.26 Score=43.09 Aligned_cols=79 Identities=10% Similarity=0.134 Sum_probs=54.0
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
++|+-+.++++|+|+ +.+|+.+++.+.+.|.+ |+.++.++.... ... .+ .++..|..|.+.+.+++++.
T Consensus 5 ~pm~~~~~~ili~g~-g~~~~~~~~a~~~~G~~--v~~~~~~~~~~~--~~~----~d--~~~~~~~~d~~~l~~~~~~~ 73 (391)
T 1kjq_A 5 TALRPAATRVMLLGS-GELGKEVAIECQRLGVE--VIAVDRYADAPA--MHV----AH--RSHVINMLDGDALRRVVELE 73 (391)
T ss_dssp CTTSTTCCEEEEESC-SHHHHHHHHHHHTTTCE--EEEEESSTTCGG--GGG----SS--EEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCE--EEEEECCCCCch--hhh----cc--ceEECCCCCHHHHHHHHHHc
Confidence 445556789999987 47899999999999987 777776654321 111 11 24557888877776665532
Q ss_pred HHHcCCccEEEECcc
Q 023441 102 KEKYGSLNLLINASG 116 (282)
Q Consensus 102 ~~~~~~id~lv~~ag 116 (282)
++|+++...+
T Consensus 74 -----~~d~v~~~~e 83 (391)
T 1kjq_A 74 -----KPHYIVPEIE 83 (391)
T ss_dssp -----CCSEEEECSS
T ss_pred -----CCCEEEECCC
Confidence 6999987554
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.02 Score=50.24 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=36.3
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
+++||+++|.|. |.+|..+|+.|.+.|++ |++.+++.++++.
T Consensus 170 ~L~GktV~V~G~-G~VG~~~A~~L~~~Gak--Vvv~D~~~~~l~~ 211 (364)
T 1leh_A 170 SLEGLAVSVQGL-GNVAKALCKKLNTEGAK--LVVTDVNKAAVSA 211 (364)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSCHHHHHH
T ss_pred CCCcCEEEEECc-hHHHHHHHHHHHHCCCE--EEEEcCCHHHHHH
Confidence 789999999997 78999999999999998 8888887765543
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.11 Score=44.45 Aligned_cols=121 Identities=17% Similarity=0.089 Sum_probs=69.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC--Cccccc-ccccccC---CCceeEEEeeCCChhHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP--NGATGL-LDLKNRF---PERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~--~~~~~~-~~~~~~~---~~~v~~~~~Dls~~~~~~~~ 97 (282)
|.++.+++.|+|+ |.+|..++..|+..|. ..|++.++++ +..+.. .++.... +....+... +|.+
T Consensus 4 m~~~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t--~d~~----- 74 (315)
T 3tl2_A 4 MTIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT--SDYA----- 74 (315)
T ss_dssp CCCCCCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE--SCGG-----
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc--CCHH-----
Confidence 4456788999997 9999999999999997 2499999983 333321 1221110 011111111 1222
Q ss_pred HHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 98 AKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
.+...|++|.++|....| + .+-.+.+..|..-.-.+.+.+..+ ... ..++++
T Consensus 75 ------a~~~aDvVIiaag~p~kp------g-------~~R~dl~~~N~~i~~~i~~~i~~~---~p~------a~vlvv 126 (315)
T 3tl2_A 75 ------DTADSDVVVITAGIARKP------G-------MSRDDLVATNSKIMKSITRDIAKH---SPN------AIIVVL 126 (315)
T ss_dssp ------GGTTCSEEEECCSCCCCT------T-------CCHHHHHHHHHHHHHHHHHHHHHH---CTT------CEEEEC
T ss_pred ------HhCCCCEEEEeCCCCCCC------C-------CCHHHHHHHHHHHHHHHHHHHHHh---CCC------eEEEEC
Confidence 234799999999976411 1 112345666665555555555443 222 277777
Q ss_pred eccc
Q 023441 178 SARV 181 (282)
Q Consensus 178 ss~~ 181 (282)
|-..
T Consensus 127 sNPv 130 (315)
T 3tl2_A 127 TNPV 130 (315)
T ss_dssp CSSH
T ss_pred CChH
Confidence 7643
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.12 Score=43.45 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=57.1
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCC---CcEEEEeecCCCcccccccccc--c--------CCCceeEEEeeCCChhHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKND---KGCVIATCRNPNGATGLLDLKN--R--------FPERLDVLQLDLTVESTI 94 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~---~~~vi~~~r~~~~~~~~~~~~~--~--------~~~~v~~~~~Dls~~~~~ 94 (282)
.+++.|.|+ |-+|.++++.|++.|. + |++.+|++++.+.+.+... . ....+.++.+ .++.+
T Consensus 3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~--V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav---~p~~~ 76 (280)
T 3tri_A 3 TSNITFIGG-GNMARNIVVGLIANGYDPNR--ICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAV---KPHQI 76 (280)
T ss_dssp CSCEEEESC-SHHHHHHHHHHHHTTCCGGG--EEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECS---CGGGH
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHCCCCCCe--EEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEe---CHHHH
Confidence 367888887 8999999999999997 6 9999999887655332210 0 0124455544 45777
Q ss_pred HHHHHHHHHH-cCCccEEEECcccC
Q 023441 95 EASAKSIKEK-YGSLNLLINASGIL 118 (282)
Q Consensus 95 ~~~~~~~~~~-~~~id~lv~~ag~~ 118 (282)
+++++++... +.+=.+++++++..
T Consensus 77 ~~vl~~l~~~~l~~~~iiiS~~agi 101 (280)
T 3tri_A 77 KMVCEELKDILSETKILVISLAVGV 101 (280)
T ss_dssp HHHHHHHHHHHHTTTCEEEECCTTC
T ss_pred HHHHHHHHhhccCCCeEEEEecCCC
Confidence 8888887765 43323777776543
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.03 Score=48.34 Aligned_cols=72 Identities=14% Similarity=0.072 Sum_probs=53.0
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
.+.++|.|+ |.+|..++++|.++|. |++++++++..+ ..+ ..+.++..|.+|++.++++ ...+
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g~---v~vid~~~~~~~-~~~------~~~~~i~gd~~~~~~L~~a------~i~~ 177 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSEV---FVLAEDENVRKK-VLR------SGANFVHGDPTRVSDLEKA------NVRG 177 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSCE---EEEESCGGGHHH-HHH------TTCEEEESCTTSHHHHHHT------CSTT
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCCc---EEEEeCChhhhh-HHh------CCcEEEEeCCCCHHHHHhc------Chhh
Confidence 457999997 8999999999999884 677788776654 221 3578899999998877754 1135
Q ss_pred ccEEEECcc
Q 023441 108 LNLLINASG 116 (282)
Q Consensus 108 id~lv~~ag 116 (282)
.|.++.+.+
T Consensus 178 a~~vi~~~~ 186 (336)
T 1lnq_A 178 ARAVIVDLE 186 (336)
T ss_dssp EEEEEECCS
T ss_pred ccEEEEcCC
Confidence 777777665
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.14 Score=42.94 Aligned_cols=85 Identities=13% Similarity=0.127 Sum_probs=53.7
Q ss_pred cEEEEecCCCchhHHHHHHHHhc-CCCcEEE-EeecCCCcc--cccccc-------------cccCCCceeEEEeeCCCh
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEK-NDKGCVI-ATCRNPNGA--TGLLDL-------------KNRFPERLDVLQLDLTVE 91 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~-G~~~~vi-~~~r~~~~~--~~~~~~-------------~~~~~~~v~~~~~Dls~~ 91 (282)
-+++|+|++|.+|+.+++.+.+. |.+ |+ +++++.... ..+.+. +...-..+ -+..|++.+
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~~~~e--lva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~-DvVIDft~p 82 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALALEGVQ--LGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDF-DVFIDFTRP 82 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEE--CCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSC-SEEEECSCH
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCE--EEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCC-CEEEEcCCh
Confidence 47999999999999999998854 444 44 555554321 111000 00000122 245699999
Q ss_pred hHHHHHHHHHHHHcCCccEEEECcccC
Q 023441 92 STIEASAKSIKEKYGSLNLLINASGIL 118 (282)
Q Consensus 92 ~~~~~~~~~~~~~~~~id~lv~~ag~~ 118 (282)
+...+.+..+.+. ++++++-.+|..
T Consensus 83 ~~~~~~~~~a~~~--G~~vVigTtG~~ 107 (273)
T 1dih_A 83 EGTLNHLAFCRQH--GKGMVIGTTGFD 107 (273)
T ss_dssp HHHHHHHHHHHHT--TCEEEECCCCCC
T ss_pred HHHHHHHHHHHhC--CCCEEEECCCCC
Confidence 9888888877765 577888777753
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.03 Score=50.69 Aligned_cols=74 Identities=15% Similarity=0.237 Sum_probs=56.8
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
-+++|.|+ |-+|..+|++|.++|.. |++++++++..+.+.+.. .+.++..|.++++-++++=- .+-
T Consensus 4 M~iiI~G~-G~vG~~la~~L~~~~~~--v~vId~d~~~~~~~~~~~-----~~~~i~Gd~~~~~~L~~Agi------~~a 69 (461)
T 4g65_A 4 MKIIILGA-GQVGGTLAENLVGENND--ITIVDKDGDRLRELQDKY-----DLRVVNGHASHPDVLHEAGA------QDA 69 (461)
T ss_dssp EEEEEECC-SHHHHHHHHHTCSTTEE--EEEEESCHHHHHHHHHHS-----SCEEEESCTTCHHHHHHHTT------TTC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCC--EEEEECCHHHHHHHHHhc-----CcEEEEEcCCCHHHHHhcCC------CcC
Confidence 35777777 68999999999999987 999999988766544332 46788999999988876522 367
Q ss_pred cEEEECcc
Q 023441 109 NLLINASG 116 (282)
Q Consensus 109 d~lv~~ag 116 (282)
|.+|-..+
T Consensus 70 d~~ia~t~ 77 (461)
T 4g65_A 70 DMLVAVTN 77 (461)
T ss_dssp SEEEECCS
T ss_pred CEEEEEcC
Confidence 88887665
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.058 Score=45.24 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=32.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhc--CCCcEEEEeec
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEK--NDKGCVIATCR 62 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~--G~~~~vi~~~r 62 (282)
.+++||+++|.|++.-+|+-+++.|..+ |+. |.++.|
T Consensus 154 i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~at--Vtv~h~ 192 (281)
T 2c2x_A 154 ISIAGAHVVVIGRGVTVGRPLGLLLTRRSENAT--VTLCHT 192 (281)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCE--EEEECT
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCE--EEEEEC
Confidence 5789999999999998999999999999 776 777644
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.17 Score=42.87 Aligned_cols=76 Identities=16% Similarity=0.087 Sum_probs=49.1
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-ccccc---ccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLK---NRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~---~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++.|+|+ |.+|.+++..|+..|.--.|++.+++++.++. ..++. ..++....+... +|.+++
T Consensus 2 kI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~~a~----------- 67 (294)
T 1oju_A 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADYSLL----------- 67 (294)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SCGGGG-----------
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CCHHHh-----------
Confidence 5789999 99999999999999862249999999877642 12211 112222222221 123322
Q ss_pred CCccEEEECcccCC
Q 023441 106 GSLNLLINASGILS 119 (282)
Q Consensus 106 ~~id~lv~~ag~~~ 119 (282)
..-|++|.++|...
T Consensus 68 ~~aDiVViaag~~~ 81 (294)
T 1oju_A 68 KGSEIIVVTAGLAR 81 (294)
T ss_dssp TTCSEEEECCCCCC
T ss_pred CCCCEEEECCCCCC
Confidence 36899999999753
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.13 Score=43.21 Aligned_cols=86 Identities=22% Similarity=0.159 Sum_probs=55.7
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccc-cccCC------CceeEEEeeCCChhHHHHHH---
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL-KNRFP------ERLDVLQLDLTVESTIEASA--- 98 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~-~~~~~------~~v~~~~~Dls~~~~~~~~~--- 98 (282)
+++.|.|+ |.+|..+++.|++.|.+ |++.+|++++.+.+.+. ..... ....++-.=+.+...+++++
T Consensus 2 ~~i~iIG~-G~mG~~~a~~l~~~G~~--V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~ 78 (287)
T 3pef_A 2 QKFGFIGL-GIMGSAMAKNLVKAGCS--VTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGK 78 (287)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHST
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCe--EEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCc
Confidence 46788874 89999999999999977 99999998876543321 10000 12333444445566777777
Q ss_pred HHHHHHcCCccEEEECccc
Q 023441 99 KSIKEKYGSLNLLINASGI 117 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~ 117 (282)
+.+.....+=.++|++...
T Consensus 79 ~~l~~~l~~~~~vi~~st~ 97 (287)
T 3pef_A 79 HGVLEGIGEGRGYVDMSTV 97 (287)
T ss_dssp TCHHHHCCTTCEEEECSCC
T ss_pred chHhhcCCCCCEEEeCCCC
Confidence 6666655444566666543
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.045 Score=47.32 Aligned_cols=43 Identities=12% Similarity=-0.035 Sum_probs=35.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCC-CcEEEEeecCCCcccc
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKND-KGCVIATCRNPNGATG 69 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~-~~~vi~~~r~~~~~~~ 69 (282)
|..+..++.|+|| |.+|.++|..|+..|. + |++.+++++.++.
T Consensus 5 ~~~~~~kI~VIGa-G~vG~~lA~~la~~g~~~--V~L~D~~~~~~~~ 48 (331)
T 1pzg_A 5 LVQRRKKVAMIGS-GMIGGTMGYLCALRELAD--VVLYDVVKGMPEG 48 (331)
T ss_dssp CCSCCCEEEEECC-SHHHHHHHHHHHHHTCCE--EEEECSSSSHHHH
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHHhCCCCe--EEEEECChhHHHH
Confidence 3333457999998 9999999999999997 5 9999999877665
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=94.13 E-value=0.39 Score=41.31 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=69.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccc--cCCCceeEE-EeeCCChhHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKN--RFPERLDVL-QLDLTVESTIEASAKSIK 102 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~--~~~~~v~~~-~~Dls~~~~~~~~~~~~~ 102 (282)
..+++.|+|+ |.+|..++..|+..|.-..|++.+.++++.+. ..++.. .+....... ..|..+
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~------------ 86 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV------------ 86 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS------------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH------------
Confidence 4578999999 99999999999999862249999998876554 222221 111122222 334332
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
+...|++|.++|....| + +.-.+.+..|..-.-.+.+.+..+ ... ..++++|-..
T Consensus 87 --~~daDiVIitaG~p~kp------G-------~tR~dll~~N~~I~k~i~~~I~k~---~P~------a~ilvvtNPv 141 (330)
T 3ldh_A 87 --SAGSKLVVITAGARQQE------G-------ESRLNLVQRNVNIFKFIIPNIVKH---SPD------CLKELHPELG 141 (330)
T ss_dssp --CSSCSEEEECCSCCCCS------S-------CCTTGGGHHHHHHHHHHHHHHHHH---CTT------CEEEECSSSH
T ss_pred --hCCCCEEEEeCCCCCCC------C-------CCHHHHHHhhHHHHHHHHHHHHhh---CCC------ceEEeCCCcc
Confidence 23689999999986411 1 111234555655444455554443 222 2777777644
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.057 Score=50.65 Aligned_cols=44 Identities=27% Similarity=0.262 Sum_probs=36.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
..+++.+|+|.|+ ||+|..+++.|++.|.. .+.+++.+.-...+
T Consensus 13 ~kL~~s~VlVVGa-GGLGsevak~La~aGVG-~ItlvD~D~Ve~SN 56 (640)
T 1y8q_B 13 EAVAGGRVLVVGA-GGIGCELLKNLVLTGFS-HIDLIDLDTIDVSN 56 (640)
T ss_dssp HHHHHCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEEECCBCCGGG
T ss_pred HHHhcCeEEEECc-CHHHHHHHHHHHHcCCC-eEEEecCCEEChhh
Confidence 4466789999998 89999999999999985 79999887655444
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.052 Score=45.63 Aligned_cols=37 Identities=32% Similarity=0.277 Sum_probs=33.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR 62 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r 62 (282)
.+++||+++|.|.++-.|+.+|..|+..|+. |.++.+
T Consensus 157 i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAt--Vtv~hs 193 (286)
T 4a5o_A 157 ADLYGMDAVVVGASNIVGRPMALELLLGGCT--VTVTHR 193 (286)
T ss_dssp CCCTTCEEEEECTTSTTHHHHHHHHHHTTCE--EEEECT
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCe--EEEEeC
Confidence 6789999999999999999999999999997 777654
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.055 Score=45.49 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=33.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR 62 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r 62 (282)
.+++||+++|.|.++-+|+.+++.|..+|+. |.++.|
T Consensus 157 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAt--Vtv~hs 193 (285)
T 3l07_A 157 IKTEGAYAVVVGASNVVGKPVSQLLLNAKAT--VTTCHR 193 (285)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCE--EEEECT
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCe--EEEEeC
Confidence 5789999999999999999999999999997 777654
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.26 Score=43.23 Aligned_cols=73 Identities=12% Similarity=0.043 Sum_probs=50.5
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+-+.||+++|.|+. .+|+.+++.+.+.|.+ |++++.+...... .. .-..+..|..|.+.+.++++
T Consensus 9 ~~~~~~k~IlIlG~G-~~g~~la~aa~~~G~~--vi~~d~~~~~~~~--~~------ad~~~~~~~~d~~~l~~~~~--- 74 (389)
T 3q2o_A 9 RIILPGKTIGIIGGG-QLGRMMALAAKEMGYK--IAVLDPTKNSPCA--QV------ADIEIVASYDDLKAIQHLAE--- 74 (389)
T ss_dssp CCCCTTSEEEEECCS-HHHHHHHHHHHHTTCE--EEEEESSTTCTTT--TT------CSEEEECCTTCHHHHHHHHH---
T ss_pred ccCCCCCEEEEECCC-HHHHHHHHHHHHcCCE--EEEEeCCCCCchH--Hh------CCceEecCcCCHHHHHHHHH---
Confidence 344689999999876 4899999999999988 7777766532111 00 11234578888888777765
Q ss_pred HHcCCccEEEE
Q 023441 103 EKYGSLNLLIN 113 (282)
Q Consensus 103 ~~~~~id~lv~ 113 (282)
+.|++..
T Consensus 75 ----~~dvI~~ 81 (389)
T 3q2o_A 75 ----ISDVVTY 81 (389)
T ss_dssp ----TCSEEEE
T ss_pred ----hCCEeee
Confidence 3677643
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.095 Score=45.42 Aligned_cols=40 Identities=23% Similarity=0.003 Sum_probs=35.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
.++.||++.|.|. |.||.++|+.|...|.+ |+..+|+...
T Consensus 167 ~~l~gktiGIIGl-G~IG~~vA~~l~~~G~~--V~~~dr~~~~ 206 (340)
T 4dgs_A 167 HSPKGKRIGVLGL-GQIGRALASRAEAFGMS--VRYWNRSTLS 206 (340)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTTTCE--EEEECSSCCT
T ss_pred ccccCCEEEEECC-CHHHHHHHHHHHHCCCE--EEEEcCCccc
Confidence 6789999999987 89999999999999987 9998888754
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.057 Score=45.18 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=32.2
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR 62 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r 62 (282)
++||+++|.|+++-.|+.+|+.|+.+|+. |+++.+
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAt--Vtv~~~ 182 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYT--VSVCHS 182 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCE--EEEECT
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCe--EEEEeC
Confidence 89999999999999999999999999998 777654
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.42 Score=35.82 Aligned_cols=84 Identities=18% Similarity=0.132 Sum_probs=52.1
Q ss_pred CcEEEEecCC---CchhHHHHHHHHhcCCCcEEEEeecCC--Ccccc--cccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 28 GGVSLVQGAS---RGIGLEFAKQLLEKNDKGCVIATCRNP--NGATG--LLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 28 gk~vlItGas---~giG~a~a~~la~~G~~~~vi~~~r~~--~~~~~--~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
-+++.|.|++ +.+|..+++.|.+.|++ |+...++. ++... ......+....+..+-.=+. .+.+.+++++
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~--v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~~ 89 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYH--VIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQE 89 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCC--EEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHHH
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCE--EEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHHH
Confidence 4678999998 67999999999999987 77766655 33211 12222222333333333344 3677777777
Q ss_pred HHHHcCCccEEEECcc
Q 023441 101 IKEKYGSLNLLINASG 116 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag 116 (282)
+.+. .+..+++..|
T Consensus 90 ~~~~--g~~~i~i~~~ 103 (145)
T 2duw_A 90 AIAI--GAKTLWLQLG 103 (145)
T ss_dssp HHHH--TCCEEECCTT
T ss_pred HHHc--CCCEEEEcCC
Confidence 6664 3555666543
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.091 Score=44.77 Aligned_cols=75 Identities=16% Similarity=0.107 Sum_probs=45.5
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccC--CCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRF--PERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~--~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++.|+|+ |.+|..++..|+..|....|++.++++++++. ..++.... ...+.+.. ++.++ +.
T Consensus 2 kI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~~~~a-----------~~ 66 (304)
T 2v6b_A 2 KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH---GGHSE-----------LA 66 (304)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE---ECGGG-----------GT
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE---CCHHH-----------hC
Confidence 6889998 99999999999999972239999998765543 22221111 11222221 22222 23
Q ss_pred CccEEEECcccCC
Q 023441 107 SLNLLINASGILS 119 (282)
Q Consensus 107 ~id~lv~~ag~~~ 119 (282)
..|++|.++|...
T Consensus 67 ~aDvVIi~~~~~~ 79 (304)
T 2v6b_A 67 DAQVVILTAGANQ 79 (304)
T ss_dssp TCSEEEECC----
T ss_pred CCCEEEEcCCCCC
Confidence 6899999998753
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.13 Score=47.78 Aligned_cols=69 Identities=20% Similarity=0.124 Sum_probs=55.5
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
+.++|.|+ |.+|..+|+.|.+.|.+ |++++++++..+.. . .++..|.+|++.++++- ..+.
T Consensus 349 ~~viIiG~-G~~G~~la~~L~~~g~~--v~vid~d~~~~~~~---------~-~~i~gD~t~~~~L~~ag------i~~a 409 (565)
T 4gx0_A 349 ELIFIIGH-GRIGCAAAAFLDRKPVP--FILIDRQESPVCND---------H-VVVYGDATVGQTLRQAG------IDRA 409 (565)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCC--EEEEESSCCSSCCS---------S-CEEESCSSSSTHHHHHT------TTSC
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCC--EEEEECChHHHhhc---------C-CEEEeCCCCHHHHHhcC------cccc
Confidence 67888888 88999999999999998 99999998876532 1 78899999988876542 2367
Q ss_pred cEEEECcc
Q 023441 109 NLLINASG 116 (282)
Q Consensus 109 d~lv~~ag 116 (282)
|.+|...+
T Consensus 410 d~vi~~~~ 417 (565)
T 4gx0_A 410 SGIIVTTN 417 (565)
T ss_dssp SEEEECCS
T ss_pred CEEEEECC
Confidence 88887776
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.1 Score=45.82 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=52.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc--cCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN--RFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~--~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
..++||+||-.||.+|| ++...++.|+. .|+.+..++ -.+.+.+... ....+++++..|+.+.+-
T Consensus 80 ~~~~~k~VLDvG~GtGi---Ls~~Aa~aGA~-~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l-------- 146 (376)
T 4hc4_A 80 AALRGKTVLDVGAGTGI---LSIFCAQAGAR-RVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL-------- 146 (376)
T ss_dssp HHHTTCEEEEETCTTSH---HHHHHHHTTCS-EEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC--------
T ss_pred HhcCCCEEEEeCCCccH---HHHHHHHhCCC-EEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC--------
Confidence 45689999999998885 34556778986 688888764 3333333332 334689999999987531
Q ss_pred HHHcCCccEEEEC
Q 023441 102 KEKYGSLNLLINA 114 (282)
Q Consensus 102 ~~~~~~id~lv~~ 114 (282)
-.++|+||..
T Consensus 147 ---pe~~DvivsE 156 (376)
T 4hc4_A 147 ---PEQVDAIVSE 156 (376)
T ss_dssp ---SSCEEEEECC
T ss_pred ---CccccEEEee
Confidence 1378998874
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.6 Score=34.85 Aligned_cols=85 Identities=15% Similarity=0.058 Sum_probs=51.7
Q ss_pred CcEEEEecCC---CchhHHHHHHHHhcCCCcEEEEeecCCCcccc--cccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 28 GGVSLVQGAS---RGIGLEFAKQLLEKNDKGCVIATCRNPNGATG--LLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 28 gk~vlItGas---~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~--~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
-+++.|.|++ +.+|..+++.|.+.|++ |+-+..+.+.... ......+....+...-+= .-.+.+.++++++.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~-vp~~~~~~vv~~~~ 98 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLF-VKPKLTMEYVEQAI 98 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTCSEETTEECBSSGGGCSSCCSEEEEC-SCHHHHHHHHHHHH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCCCeECCeeccCCHHHcCCCCCEEEEE-eCHHHHHHHHHHHH
Confidence 5789999998 78999999999999986 6665444322211 112222222233332222 23467777777777
Q ss_pred HHcCCccEEEECccc
Q 023441 103 EKYGSLNLLINASGI 117 (282)
Q Consensus 103 ~~~~~id~lv~~ag~ 117 (282)
+. .+..+++..|.
T Consensus 99 ~~--gi~~i~~~~g~ 111 (144)
T 2d59_A 99 KK--GAKVVWFQYNT 111 (144)
T ss_dssp HH--TCSEEEECTTC
T ss_pred Hc--CCCEEEECCCc
Confidence 65 35677776664
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.2 Score=42.37 Aligned_cols=80 Identities=11% Similarity=0.030 Sum_probs=51.0
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
.+++.|.||.|.+|.++++.|++.|.+ |++.+|+++. ...+... ...+.++.+= +..+.++++++...+.+
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~--V~~~~~~~~~--~~~~~~~--~aDvVilavp---~~~~~~vl~~l~~~l~~ 91 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYP--ISILDREDWA--VAESILA--NADVVIVSVP---INLTLETIERLKPYLTE 91 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCC--EEEECTTCGG--GHHHHHT--TCSEEEECSC---GGGHHHHHHHHGGGCCT
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCe--EEEEECCccc--CHHHHhc--CCCEEEEeCC---HHHHHHHHHHHHhhcCC
Confidence 467999999999999999999999987 8888887653 1111111 2345555443 23466667666554432
Q ss_pred ccEEEECcc
Q 023441 108 LNLLINASG 116 (282)
Q Consensus 108 id~lv~~ag 116 (282)
=-+++.+++
T Consensus 92 ~~iv~~~~s 100 (298)
T 2pv7_A 92 NMLLADLTS 100 (298)
T ss_dssp TSEEEECCS
T ss_pred CcEEEECCC
Confidence 224444444
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.24 Score=36.91 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=52.0
Q ss_pred CcEEEEecCC---CchhHHHHHHHHhcCCCcEEEEeecC--CCcccc--cccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 28 GGVSLVQGAS---RGIGLEFAKQLLEKNDKGCVIATCRN--PNGATG--LLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 28 gk~vlItGas---~giG~a~a~~la~~G~~~~vi~~~r~--~~~~~~--~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
-+++.|.|+| +.+|..+++.|.+.|++ |+-+..+ .++... ......+....+...-.=+ -.+.+.+++++
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~v-p~~~~~~v~~~ 89 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFR-PPSALMDHLPE 89 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECS-CHHHHTTTHHH
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEe-CHHHHHHHHHH
Confidence 4789999998 78999999999999986 6665544 222211 2222223333333332222 33666677777
Q ss_pred HHHHcCCccEEEECcccC
Q 023441 101 IKEKYGSLNLLINASGIL 118 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~ 118 (282)
+.+. .+..+++.+|..
T Consensus 90 ~~~~--gi~~i~~~~g~~ 105 (140)
T 1iuk_A 90 VLAL--RPGLVWLQSGIR 105 (140)
T ss_dssp HHHH--CCSCEEECTTCC
T ss_pred HHHc--CCCEEEEcCCcC
Confidence 6665 355677777653
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.11 Score=43.68 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=33.9
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
+++.|.|++|.+|.++++.|++.|.+ |++.+|+++..+.
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~--V~~~~r~~~~~~~ 50 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHH--LAAIEIAPEGRDR 50 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSE--EEEECCSHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCE--EEEEECCHHHHHH
Confidence 57999999999999999999999976 8899998765543
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.075 Score=44.99 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=33.1
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR 62 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r 62 (282)
.++.||+++|.|++.-+|+-+|+.|+..|+. |.++.+
T Consensus 161 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAt--Vtv~hs 197 (301)
T 1a4i_A 161 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNAT--VTTCHS 197 (301)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCE--EEEECT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHhCCCe--EEEEEC
Confidence 5789999999999999999999999999987 777653
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.14 Score=43.64 Aligned_cols=87 Identities=14% Similarity=0.016 Sum_probs=52.9
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccc-cccCC------CceeEEEeeCCChhHHHHHH--
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL-KNRFP------ERLDVLQLDLTVESTIEASA-- 98 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~-~~~~~------~~v~~~~~Dls~~~~~~~~~-- 98 (282)
-+++.|.| .|-+|..+++.|++.|.+ |++.+|++++.+.+.+. ..... ....++-.=+.+...+++++
T Consensus 21 m~~I~iIG-~G~mG~~~A~~l~~~G~~--V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~ 97 (310)
T 3doj_A 21 MMEVGFLG-LGIMGKAMSMNLLKNGFK--VTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFD 97 (310)
T ss_dssp SCEEEEEC-CSHHHHHHHHHHHHTTCE--EEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHS
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCe--EEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhC
Confidence 35788886 589999999999999987 99999998876543321 00000 02233333344555666665
Q ss_pred -HHHHHHcCCccEEEECccc
Q 023441 99 -KSIKEKYGSLNLLINASGI 117 (282)
Q Consensus 99 -~~~~~~~~~id~lv~~ag~ 117 (282)
+.+.....+=.++|++...
T Consensus 98 ~~~l~~~l~~g~~vv~~st~ 117 (310)
T 3doj_A 98 KGGVLEQICEGKGYIDMSTV 117 (310)
T ss_dssp TTCGGGGCCTTCEEEECSCC
T ss_pred chhhhhccCCCCEEEECCCC
Confidence 4444444334556665543
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=93.54 E-value=0.21 Score=41.82 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=33.0
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP 64 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~ 64 (282)
-.++++||++||.||+ .+|...++.|++.|++ |++++.+.
T Consensus 7 l~~~l~~k~VLVVGgG-~va~rka~~Ll~~Ga~--VtViap~~ 46 (274)
T 1kyq_A 7 LAHQLKDKRILLIGGG-EVGLTRLYKLMPTGCK--LTLVSPDL 46 (274)
T ss_dssp EEECCTTCEEEEEEES-HHHHHHHHHHGGGTCE--EEEEEEEE
T ss_pred EEEEcCCCEEEEECCc-HHHHHHHHHHHhCCCE--EEEEcCCC
Confidence 3478899999999976 5899999999999998 66666544
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.53 Score=40.23 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=50.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-ccccc---ccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLK---NRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~---~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
+..++.|+|+ |.+|..++..|+.+|.-..|++.+.++++++. ..++. ...+..+.+.. .+.++
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~---~~~~a--------- 71 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA---GEYSD--------- 71 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE---CCGGG---------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe---CCHHH---------
Confidence 3468999998 99999999999998852349999998765543 22221 11112333332 22232
Q ss_pred HHcCCccEEEECcccCC
Q 023441 103 EKYGSLNLLINASGILS 119 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~ 119 (282)
+...|++|..+|...
T Consensus 72 --~~~aDvVvi~ag~~~ 86 (317)
T 3d0o_A 72 --CHDADLVVICAGAAQ 86 (317)
T ss_dssp --GTTCSEEEECCCCCC
T ss_pred --hCCCCEEEECCCCCC
Confidence 237899999999754
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.31 Score=43.41 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=54.4
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
+++.-..++++|+|+ +.+|+.+++.+.+.|.+ |+.++.++.... .... + ..+..|..|.+.+.+++.+.
T Consensus 13 ~~~~~~~~~ili~g~-g~~g~~~~~a~~~~G~~--v~~v~~~~~~~~--~~~a----d--~~~~~~~~d~~~l~~~~~~~ 81 (433)
T 2dwc_A 13 TATTDSAQKILLLGS-GELGKEIAIEAQRLGVE--VVAVDRYANAPA--MQVA----H--RSYVGNMMDKDFLWSVVERE 81 (433)
T ss_dssp CTTSTTCCEEEEESC-SHHHHHHHHHHHHTTCE--EEEEESSTTCHH--HHHS----S--EEEESCTTCHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCE--EEEEECCCCChh--hhhc----c--eEEECCCCCHHHHHHHHHHc
Confidence 334444579999988 57999999999999987 777776654321 1111 1 24567888887777666532
Q ss_pred HHHcCCccEEEECccc
Q 023441 102 KEKYGSLNLLINASGI 117 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~ 117 (282)
++|+++...+.
T Consensus 82 -----~~d~V~~~~e~ 92 (433)
T 2dwc_A 82 -----KPDAIIPEIEA 92 (433)
T ss_dssp -----CCSEEEECSSC
T ss_pred -----CCCEEEECccc
Confidence 69999886653
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=93.38 E-value=0.17 Score=45.08 Aligned_cols=72 Identities=13% Similarity=0.066 Sum_probs=51.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+-+.||+++|.|+ |.+|+.+++.+.+.|.+ |++++.++.... .... + ..+..|..|.+.+.+++.
T Consensus 31 ~~~~~~~IlIlG~-G~lg~~~~~aa~~lG~~--v~v~d~~~~~p~--~~~a----d--~~~~~~~~d~~~l~~~a~---- 95 (419)
T 4e4t_A 31 PILPGAWLGMVGG-GQLGRMFCFAAQSMGYR--VAVLDPDPASPA--GAVA----D--RHLRAAYDDEAALAELAG---- 95 (419)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSCTTCHH--HHHS----S--EEECCCTTCHHHHHHHHH----
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHHHCCCE--EEEECCCCcCch--hhhC----C--EEEECCcCCHHHHHHHHh----
Confidence 3457999999986 47999999999999988 777776554321 1111 1 244578889988888773
Q ss_pred HcCCccEEEE
Q 023441 104 KYGSLNLLIN 113 (282)
Q Consensus 104 ~~~~id~lv~ 113 (282)
++|+++.
T Consensus 96 ---~~D~V~~ 102 (419)
T 4e4t_A 96 ---LCEAVST 102 (419)
T ss_dssp ---HCSEEEE
T ss_pred ---cCCEEEE
Confidence 4898884
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 282 | ||||
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 2e-42 | |
| d1snya_ | 248 | c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly | 1e-32 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 4e-29 | |
| d1wmaa1 | 275 | c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox | 2e-26 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 3e-26 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 1e-25 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 2e-25 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 4e-24 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 7e-24 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 8e-24 | |
| d1xu9a_ | 269 | c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase | 9e-24 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 3e-23 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 3e-23 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 6e-23 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 6e-23 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 2e-22 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 2e-22 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 8e-22 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 2e-21 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 4e-21 | |
| d2bd0a1 | 240 | c.2.1.2 (A:2-241) Bacterial sepiapterin reductase | 9e-21 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 1e-20 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 7e-20 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 1e-19 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 1e-19 | |
| d1gz6a_ | 302 | c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do | 2e-19 | |
| d2rhca1 | 257 | c.2.1.2 (A:5-261) beta-keto acyl carrier protein r | 4e-19 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 1e-18 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 2e-18 | |
| d1mxha_ | 266 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 2e-18 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 3e-18 | |
| d1ulsa_ | 242 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 5e-18 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 1e-17 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 1e-17 | |
| d1q7ba_ | 243 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 2e-17 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 3e-17 | |
| d1oaaa_ | 259 | c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus | 4e-17 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 4e-17 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 6e-17 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 2e-16 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 2e-16 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 3e-16 | |
| d1gega_ | 255 | c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl | 7e-16 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 1e-15 | |
| d1jtva_ | 285 | c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi | 2e-15 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 3e-15 | |
| d1geea_ | 261 | c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat | 3e-15 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 4e-15 | |
| d1zmta1 | 252 | c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag | 6e-15 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 4e-14 | |
| d1uaya_ | 241 | c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena | 6e-14 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 1e-13 | |
| d1edoa_ | 244 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 2e-13 | |
| d1ulua_ | 256 | c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph | 2e-13 | |
| d2ag5a1 | 245 | c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami | 1e-12 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 2e-12 | |
| d1o5ia_ | 234 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 3e-12 | |
| d2o23a1 | 248 | c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr | 8e-12 | |
| d1fjha_ | 257 | c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase | 6e-08 | |
| d1qsga_ | 258 | c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli | 5e-07 | |
| d1e7wa_ | 284 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 6e-06 | |
| d2fr1a1 | 259 | c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI | 3e-05 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 7e-05 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 7e-04 | |
| d2pd4a1 | 274 | c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacte | 0.002 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 0.002 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 0.004 |
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 143 bits (362), Expect = 2e-42
Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 29/262 (11%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
+V GA+RGIGL +QL++ + +IAT R+ AT +LK+ R+ VL L +T +
Sbjct: 7 VVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT---ELKSIKDSRVHVLPLTVTCD 63
Query: 92 STIEASAKSIKEKYGS--LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
+++ + E GS L+LLIN +G+ L T + ++ + +VN
Sbjct: 64 KSLDTFVSKVGEIVGSDGLSLLINNAGV------LLSYGTNTEPNRAVIAEQLDVNTTSV 117
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGG---------WHSYRASKA 200
+L+ + + PLLK + D V+ + S G + +YR SKA
Sbjct: 118 VLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKA 177
Query: 201 ALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNI 260
A+N ++++V+ V+ + PG V T+L T E S +L++
Sbjct: 178 AINMFGRTLAVDLKDDN--VLVVNFCPGWVQTNLGGK-------NAALTVEQSTAELISS 228
Query: 261 INNIKSHDNGKFFAWDGQEIPW 282
N + + NG+FF + + +
Sbjct: 229 FNKLDNSHNGRFFMRNLKPYEF 250
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 118 bits (295), Expect = 1e-32
Identities = 73/259 (28%), Positives = 113/259 (43%), Gaps = 24/259 (9%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV 90
L+ G +RG+GL K LL + TCRN A L DL + +L++DL
Sbjct: 6 LITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHS-NIHILEIDLRN 64
Query: 91 ESTIEA--SAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVG 148
+ + K LN+L N + + V L+ + N V
Sbjct: 65 FDAYDKLVADIEGVTKDQGLNVLFNN------AGIAPKSARITAVRSQELLDTLQTNTVV 118
Query: 149 PILVIKHMSPLLKVGGTG-----IERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
PI++ K PLLK + A + N+S+ +GSI N GG ++YR SK+ALN
Sbjct: 119 PIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALN 178
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINN 263
TKS+SV+ ++ ++C+ LHPG V TD+ S +++ I+
Sbjct: 179 AATKSLSVDLYPQR--IMCVSLHPGWVKTDMGGSSAP-------LDVPTSTGQIVQTISK 229
Query: 264 IKSHDNGKFFAWDGQEIPW 282
+ NG F +DG + W
Sbjct: 230 LGEKQNGGFVNYDGTPLAW 248
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (273), Expect = 4e-29
Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 16/222 (7%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD--LKNRFPERLD 82
+W+ ++LV GAS GIG A+ L+++ K V+ R L +P L
Sbjct: 7 RWRDRLALVTGASGGIGAAVARALVQQGLK--VVGCARTVGNIEELAAECKSAGYPGTLI 64
Query: 83 VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAY 142
+ DL+ E I + +I+ ++ +++ IN +G+ TL S +
Sbjct: 65 PYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGL-------ARPDTLLSGSTSGWKDMF 117
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
VN + + + +K + N+++ G L H Y A+K A+
Sbjct: 118 NVNVLALSICTREAYQSMKERNVDDGH----IININSMSGHRV-LPLSVTHFYSATKYAV 172
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
LT+ + E + + + PG V+T + PE
Sbjct: 173 TALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPE 214
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (255), Expect = 2e-26
Identities = 53/287 (18%), Positives = 101/287 (35%), Gaps = 50/287 (17%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
V+LV G ++GIGL + L G V+ T R+ + QLD+
Sbjct: 5 VALVTGGNKGIGLAIVRDLCRLFS-GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDID 63
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
+I A ++++YG L++L+N +GI + + + N G
Sbjct: 64 DLQSIRALRDFLRKEYGGLDVLVNNAGI-------AFKVADPTPFHIQAEVTMKTNFFGT 116
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVG--------------------------- 182
V + PL+K G + +V+ + ++ A
Sbjct: 117 RDVCTELLPLIKPQGRVV--NVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFV 174
Query: 183 -----SIGDNRLGGWHSYRASKAALNQLTKSVSVEFG--RKKDPVICILLHPGTVDTDLS 235
+ +Y +K + L++ + + RK D ++ PG V TD++
Sbjct: 175 EDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMA 234
Query: 236 RPFQRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282
P PE T + L ++ +G+F + + + W
Sbjct: 235 GPKATKSPEEGAETPVY-----LALLPPDAEGPHGQFVS-EKRVEQW 275
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (252), Expect = 3e-26
Identities = 46/237 (19%), Positives = 87/237 (36%), Gaps = 23/237 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G + L+ GA GIG A + + K ++ N +G ++ +
Sbjct: 6 TGEIVLITGAGHGIGRLTAYEFAKLKSK--LVLWDINKHGLEETAAKCKGLGAKVHTFVV 63
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLIN-ASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
D + I +SAK +K + G +++L+N A + + + + K +EVN
Sbjct: 64 DCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKT--------FEVN 115
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
+ K P + G + VA+ + V +Y +SK A
Sbjct: 116 VLAHFWTTKAFLPAMTKNNHGH---IVTVASAAGHVSV------PFLLAYCSSKFAAVGF 166
Query: 206 TKSVSVEFGRKKDPVI-CILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261
K+++ E + + L P V+T + + G E V +L++ I
Sbjct: 167 HKTLTDELAALQITGVKTTCLCPNFVNTGFIK--NPSTSLGPTLEPEEVVNRLMHGI 221
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 100 bits (250), Expect = 1e-25
Identities = 43/235 (18%), Positives = 87/235 (37%), Gaps = 19/235 (8%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL---LDLKNRFPERL 81
++ V+++ G+S GIG A + K V T R+ + + +
Sbjct: 2 RFAEKVAIITGSSNGIGRATAVLFAREGAK--VTITGRHAERLEETRQQILAAGVSEQNV 59
Query: 82 DVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLA 141
+ + D+T ++ + + K+G L++L+N +G + + T + + +
Sbjct: 60 NSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATL-- 117
Query: 142 YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
+N I + K P L I ++ + L A + Y +KAA
Sbjct: 118 -NLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHAT---------PDFPYYSIAKAA 167
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQK 256
++Q T++ +++ + V I PG V T K F + K
Sbjct: 168 IDQYTRNTAIDLIQHGIRVNSI--SPGLVATGFGSAMGMPEETSKKFYSTMATMK 220
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 98.8 bits (246), Expect = 2e-25
Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 26/226 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G LV G +RGIG A+ + V P G + F Q+
Sbjct: 4 AGKGVLVTGGARGIGRAIAQAFAREGAL--VALCDLRPEGKEVAEAIGGAF------FQV 55
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
DL E + G +++L+N + I + + L L + + EVN
Sbjct: 56 DLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSAL--TVRLPEWRR-----VLEVNL 108
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
P+ + + ++ G + VA++ +Y ASK L LT
Sbjct: 109 TAPMHLSALAAREMRKVGG---GAIVNVASVQGLFAEQE------NAAYNASKGGLVNLT 159
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEF 252
+S++++ + V + PG + T+ P+ + +++
Sbjct: 160 RSLALDLAPLRIRVNAV--APGAIATEAVLEAIALSPDPERTRRDW 203
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 96.3 bits (239), Expect = 4e-24
Identities = 39/226 (17%), Positives = 79/226 (34%), Gaps = 20/226 (8%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
KG L+ G + G+G + + + K V ++ A L +L+ + + +
Sbjct: 4 KGEAVLITGGASGLGRALVDRFVAEGAK--VAVLDKS---AERLAELETDHGDNVLGIVG 58
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+ + +A ++G ++ LI +GI L + + +N
Sbjct: 59 DVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVF--HINV 116
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G I +K P L + + + + GG Y A+K A+ L
Sbjct: 117 KGYIHAVKACLPALVASRGNV----IFTISNAGFYPN------GGGPLYTAAKHAIVGLV 166
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEF 252
+ ++ E V + G +++DL P + + T
Sbjct: 167 RELAFELAPY---VRVNGVGSGGINSDLRGPSSLGMGSKAISTVPL 209
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 95.1 bits (236), Expect = 7e-24
Identities = 40/212 (18%), Positives = 76/212 (35%), Gaps = 27/212 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPE-RLDVLQ 85
+ A GIGL+ +++L+++N K T L +LK P+ +
Sbjct: 4 TNKNVIFVAALGGIGLDTSRELVKRNLK--NFVILDRVENPTALAELKAINPKVNITFHT 61
Query: 86 LDLTV-ESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
D+TV + + K I ++ ++++LIN +GI + + + +
Sbjct: 62 YDVTVPVAESKKLLKKIFDQLKTVDILINGAGI-------LDDHQIERT--------IAI 106
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N G + + G +A + +++ Y ASKAA+
Sbjct: 107 NFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI------HQVPVYSASKAAVVS 160
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
T S++ I +PG T L
Sbjct: 161 FTNSLAKLAPITGVTAYSI--NPGITRTPLVH 190
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 95.5 bits (237), Expect = 8e-24
Identities = 41/215 (19%), Positives = 82/215 (38%), Gaps = 21/215 (9%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL---KNRFPERL 81
++ G ++ G+S GIG A ++ + V T RN + E++
Sbjct: 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQ--VTITGRNEDRLEETKQQILKAGVPAEKI 58
Query: 82 DVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLA 141
+ + D+T S + + K+G +++L+N +G + + +K
Sbjct: 59 NAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQK-----T 113
Query: 142 YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
+++N I + + L I ++VA G G+ Y +KAA
Sbjct: 114 FKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVA---------GPQAHSGYPYYACAKAA 164
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
L+Q T+ +++ + V + PG V T
Sbjct: 165 LDQYTRCTAIDLIQHGVRVNSV--SPGAVATGFMG 197
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.2 bits (236), Expect = 9e-24
Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 20/236 (8%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD-LKNRFPERLDVLQ 85
+G +V GAS+GIG E A L + V+ T R+ ++ +
Sbjct: 13 QGKKVIVTGASKGIGREMAYHLAKMGAH--VVVTARSKETLQKVVSHCLELGAASAHYIA 70
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
+ + E + G L++LI L + + + EVN
Sbjct: 71 GTMEDMTFAEQFVAQAGKLMGGLDMLILNHIT-------NTSLNLFHDDIHHVRKSMEVN 123
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
+ +++ P+LK I VV++L+ +V +Y ASK AL+
Sbjct: 124 FLSYVVLTVAALPMLKQSNGSIV----VVSSLAGKVAY------PMVAAYSASKFALDGF 173
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261
S+ E+ + V L G +DT+ + + + KE +++
Sbjct: 174 FSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGG 229
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 93.5 bits (232), Expect = 3e-23
Identities = 44/212 (20%), Positives = 89/212 (41%), Gaps = 22/212 (10%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVL 84
+ +G V+LV G + G+GLE K LL + K V + N L ER +
Sbjct: 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAK--VAFSDINEAAGQ---QLAAELGERSMFV 57
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
+ D++ E+ +++ + G+LN+L+N +GI + ++
Sbjct: 58 RHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGI-------LLPGDMETGRLEDFSRLLKI 110
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N + + +K G I +A++S+ + + Y ASKAA++
Sbjct: 111 NTESVFIGCQQGIAAMKETGGSI----INMASVSSWLPIEQ------YAGYSASKAAVSA 160
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
LT++ ++ ++ + +HP + T + +
Sbjct: 161 LTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQ 192
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 93.5 bits (232), Expect = 3e-23
Identities = 45/216 (20%), Positives = 88/216 (40%), Gaps = 18/216 (8%)
Query: 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLD 82
S + G V+++ G + GIGL A + +E+ K V+ T R+ + P+++
Sbjct: 1 SNRLDGKVAIITGGTLGIGLAIATKFVEEGAK--VMITGRHSDVGEKAAKSVGT-PDQIQ 57
Query: 83 VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAY 142
Q D + E + ++ +G ++ L+N +GI ++ + +
Sbjct: 58 FFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGI-------AVNKSVEETTTAEWRKLL 110
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
VN G + +K G G + ++++ VG +Y ASK A+
Sbjct: 111 AVNLDGVFFGTRLGIQRMKNKGLG--ASIINMSSIEGFVGDPS------LGAYNASKGAV 162
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
++KS +++ K V +HPG + T L
Sbjct: 163 RIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDL 198
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.7 bits (230), Expect = 6e-23
Identities = 50/235 (21%), Positives = 98/235 (41%), Gaps = 24/235 (10%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVL 84
++ G V +V G RGIG + + + V+ ++ +G L+ P + +
Sbjct: 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGAR--VVICDKDESGGR---ALEQELPGAV-FI 56
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
D+T E ++ ++G L+ ++N +G P + ET+ + E+
Sbjct: 57 LCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPE-ETSAQGFRQ-----LLEL 110
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N +G + K P L+ + N+S+ VG+IG Y A+K A+
Sbjct: 111 NLLGTYTLTKLALPYLRKSQGNV-------INISSLVGAIGQA---QAVPYVATKGAVTA 160
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLN 259
+TK+++++ V CI PG + T L +P+ + +E + + L
Sbjct: 161 MTKALALDESPYGVRVNCI--SPGNIWTPLWEELAALMPDPRASIREGMLAQPLG 213
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 92.7 bits (230), Expect = 6e-23
Identities = 51/221 (23%), Positives = 84/221 (38%), Gaps = 23/221 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G ++ G +RG+G E A+Q + + V+ + L
Sbjct: 4 SGKTVIITGGARGLGAEAARQAVAAGAR--VVLADVLDE---EGAATARELGDAARYQHL 58
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T+E + +E++GS++ L+N +GI L E+N
Sbjct: 59 DVTIEEDWQRVVAYAREEFGSVDGLVNNAGI-------STGMFLETESVERFRKVVEINL 111
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G + +K + P +K G G ++V SA G L SY ASK + L+
Sbjct: 112 TGVFIGMKTVIPAMKDAGGG-----SIVNISSA----AGLMGLALTSSYGASKWGVRGLS 162
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL 247
K +VE G D + +HPG T ++ EG
Sbjct: 163 KLAAVELG--TDRIRVNSVHPGMTYTPMTAETGIRQGEGNY 201
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 91.6 bits (227), Expect = 2e-22
Identities = 39/219 (17%), Positives = 86/219 (39%), Gaps = 23/219 (10%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL---KNRFPERL 81
++ ++ G+S GIG A ++ V T R+ + +++
Sbjct: 2 RFSNKTVIITGSSNGIGRTTAILFAQEGAN--VTITGRSSERLEETRQIILKSGVSEKQV 59
Query: 82 DVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQP--ETTLNKVEKSSLM 139
+ + D+T E + S +++G +++L+N +G + ++ K+
Sbjct: 60 NSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKT--- 116
Query: 140 LAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASK 199
++N I + K + P L I ++VA A+ + Y +K
Sbjct: 117 --LKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQ---------PDFLYYAIAK 165
Query: 200 AALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
AAL+Q T+S +++ + + + PG V+T +
Sbjct: 166 AALDQYTRSTAIDLAKFG--IRVNSVSPGMVETGFTNAM 202
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 90.7 bits (225), Expect = 2e-22
Identities = 39/215 (18%), Positives = 81/215 (37%), Gaps = 22/215 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
K ++++ G + GIG A++ + + P A R+ ++
Sbjct: 4 KDKLAVITGGANGIGRAIAERFAVEGAD--IAIADLVP--APEAEAAIRNLGRRVLTVKC 59
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D++ +EA K + +G ++L+N +GI P +++ +E+N
Sbjct: 60 DVSQPGDVEAFGKQVISTFGRCDILVNNAGI-------YPLIPFDELTFEQWKKTFEINV 112
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
L+ K P +K G G NL++ + + ++KAA T
Sbjct: 113 DSGFLMAKAFVPGMKRNGWGRI------INLTSTTYWLKIEAYTHYI---STKAANIGFT 163
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN 241
++++ + G+ V I P V T + +
Sbjct: 164 RALASDLGKDGITVNAI--APSLVRTATTEASALS 196
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 89.7 bits (222), Expect = 8e-22
Identities = 45/216 (20%), Positives = 78/216 (36%), Gaps = 21/216 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
+G +LV G SRGIG ++L V RN L +++
Sbjct: 7 EGCTALVTGGSRGIGYGIVEELASLGAS--VYTCSRNQKELNDCLTQWRSKGFKVEASVC 64
Query: 87 DLTVESTIEASAKSIKEKY-GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
DL+ S + ++ + G LN+L+N +GI L +N
Sbjct: 65 DLSSRSERQELMNTVANHFHGKLNILVNNAGI-------VIYKEAKDYTVEDYSLIMSIN 117
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
+ P LK G ++ V+ G + Y A+K A++QL
Sbjct: 118 FEAAYHLSVLAHPFLKASERGNVVFISSVS---------GALAVPYEAVYGATKGAMDQL 168
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN 241
T+ ++ E+ + V + PG + T L ++
Sbjct: 169 TRCLAFEWAKDNIRVNGV--GPGVIATSLVEMTIQD 202
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.5 bits (219), Expect = 2e-21
Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 25/222 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD--LKNRFPERLDVL 84
G V+LV GA++GIG FA+ LL K K V N + P++ +
Sbjct: 2 NGKVALVTGAAQGIGRAFAEALLLKGAK--VALVDWNLEAGVQCKAALHEQFEPQKTLFI 59
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
Q D+ + + + + + + +G L++L+N +G+ + N ++
Sbjct: 60 QCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKN---------------WEKTLQI 104
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N V I + G + +++L+ + Y ASK +
Sbjct: 105 NLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV------AQQPVYCASKHGIVG 158
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGK 246
T+S ++ V + PG V+T + ++ G+
Sbjct: 159 FTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQ 200
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 87.8 bits (217), Expect = 4e-21
Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 15/220 (6%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD-LKNRFPERLDVLQ 85
+V G +RGIGL F + + V R+ A + + + F + Q
Sbjct: 8 VNKTIIVTGGNRGIGLAFTRAVAAAGAN--VAVIYRSAADAVEVTEKVGKEFGVKTKAYQ 65
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
D++ + + + I G ++ LI +G+ ++ Y+VN
Sbjct: 66 CDVSNTDIVTKTIQQIDADLGPISGLIANAGV-------SVVKPATELTHEDFAFVYDVN 118
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-GDNRLGGWHSYRASKAALNQ 204
G + ++ L + V +++S+++ + N Y +SKAA +
Sbjct: 119 VFGVFNTCRAVAKLWLQKQQK--GSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSN 176
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
L K ++ E+ + L PG V+TD + + + +
Sbjct: 177 LVKGLAAEWASAG--IRVNALSPGYVNTDQTAHMDKKIRD 214
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Score = 86.3 bits (213), Expect = 9e-21
Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 23/220 (10%)
Query: 30 VSLVQGASRGIGLEFAKQLLEK-----NDKGCVIATCRNPNGATGLLDLKNRFPERLDVL 84
+ L+ GA +GIG A + + + ++ + R + D +
Sbjct: 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTI 62
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
D++ + + I E+YG ++ L+N +G+ +
Sbjct: 63 TADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYT-------MNT 115
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N G + + + L++ +G + VA A Y SK
Sbjct: 116 NLKGTFFLTQALFALMERQHSGHIFFITSVAATKA---------FRHSSIYCMSKFGQRG 166
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
L +++ + K V + PG V T + +
Sbjct: 167 LVETMRLYAR--KCNVRITDVQPGAVYTPMWGKVDDEMQA 204
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 86.3 bits (213), Expect = 1e-20
Identities = 44/220 (20%), Positives = 83/220 (37%), Gaps = 18/220 (8%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVL 84
+ + V+++ G + GIG AK + K V+ + + + P+ + +
Sbjct: 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAK--VVIADIADDHGQKVCNNIGS-PDVISFV 59
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
D+T + + + K+G L+++ G+LS E ++ ++
Sbjct: 60 HCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKR-----VMDI 114
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N G LV KH + ++ G A +++ +A G H Y A+K A+
Sbjct: 115 NVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGV--------SHVYTATKHAVLG 166
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
LT S+ E G V C+ P V + L
Sbjct: 167 LTTSLCTELGEYGIRVNCV--SPYIVASPLLTDVFGVDSS 204
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 84.3 bits (208), Expect = 7e-20
Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 20/213 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD-LKNRFPERLDVLQ 85
+G V+LV G SRG+G A+ L E V+ RN A+ L ++ +
Sbjct: 4 RGRVALVTGGSRGLGFGIAQGLAEAGCS--VVVASRNLEEASEAAQKLTEKYGVETMAFR 61
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
D++ ++ +++KEK+G L+ ++NA+GI + EVN
Sbjct: 62 CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGI-------NRRHPAEEFPLDEFRQVIEVN 114
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G V + LL+ ++ + + + +Y ASK + L
Sbjct: 115 LFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPN--------ISAYAASKGGVASL 166
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
TK+++ E+GR + ++ PG T ++
Sbjct: 167 TKALAKEWGRYG--IRVNVIAPGWYRTKMTEAV 197
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.1 bits (205), Expect = 1e-19
Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 27/224 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G LV GA +GIG + L + V+A R L+ ++ + +
Sbjct: 6 AGRRVLVTGAGKGIGRGTVQALHATGAR--VVAVSRTQADLDSLVREC----PGIEPVCV 59
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
DL E G ++LL+N + + +V K + ++EVN
Sbjct: 60 DLGDWEATER----ALGSVGPVDLLVNNAAV-------ALLQPFLEVTKEAFDRSFEVNL 108
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
I V + ++ L G + N+S++ + Y ++K AL+ LT
Sbjct: 109 RAVIQVSQIVARGLIARGVPG-----AIVNVSSQCSQR---AVTNHSVYCSTKGALDMLT 160
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTK 250
K +++E G K + ++P V T + + + + K
Sbjct: 161 KVMALELGPHK--IRVNAVNPTVVMTSMGQATWSDPHKAKTMLN 202
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.3 bits (208), Expect = 1e-19
Identities = 43/223 (19%), Positives = 78/223 (34%), Gaps = 26/223 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD-----LKNRFPERL 81
+G V++V G + GIG K+LLE V+ R D L R+
Sbjct: 11 QGQVAIVTGGATGIGKAIVKELLELGSN--VVIASRKLERLKSAADELQANLPPTKQARV 68
Query: 82 DVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLA 141
+Q ++ E + KS + +G +N L+N G Q + +
Sbjct: 69 IPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGG-------QFLSPAEHISSKGWHAV 121
Query: 142 YEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAA 201
E N G + K + G V + + G A++A
Sbjct: 122 LETNLTGTFYMCKAVYSSWMKEHGGSI----VNIIVPTKAGF------PLAVHSGAARAG 171
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
+ LTKS+++E+ + C+ PG + + + + +
Sbjct: 172 VYNLTKSLALEWACSGIRINCV--APGVIYSQTAVENYGSWGQ 212
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 83.5 bits (206), Expect = 2e-19
Identities = 37/226 (16%), Positives = 78/226 (34%), Gaps = 26/226 (11%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN------GATGLLDLKNRFP 78
++ G V LV GA G+G +A E+ V+ + G++ +
Sbjct: 4 RFDGRVVLVTGAGGGLGRAYALAFAERGAL--VVVNDLGGDFKGVGKGSSAADKVVEEIR 61
Query: 79 ERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSL 138
R + E K+ + +G +++++N +GIL + + +++
Sbjct: 62 RRGGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGIL-------RDRSFSRISDEDW 114
Query: 139 MLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRAS 198
+ V+ G V + +K G + ++ G G+ G +Y A+
Sbjct: 115 DIIQRVHLRGSFQVTRAAWDHMKKQNYG------RIIMTASASGIYGNF---GQANYSAA 165
Query: 199 KAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
K L L ++ +E + I P ++ E
Sbjct: 166 KLGLLGLANTLVIEGRKNNIHCNTI--APNAGSRMTETVMPEDLVE 209
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Score = 82.5 bits (203), Expect = 4e-19
Identities = 50/234 (21%), Positives = 90/234 (38%), Gaps = 18/234 (7%)
Query: 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87
V+LV GA+ GIGLE A++L ++ + V R G L D D
Sbjct: 2 SEVALVTGATSGIGLEIARRLGKEGLR--VFVCARGEEGLRTTLKELREAGVEADGRTCD 59
Query: 88 LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAV 147
+ IEA ++ E+YG +++L+N +G ++ + E N
Sbjct: 60 VRSVPEIEALVAAVVERYGPVDVLVNNAGR-------PGGGATAELADELWLDVVETNLT 112
Query: 148 GPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTK 207
G V K + + G R V + + G + Y ASK + TK
Sbjct: 113 GVFRVTKQVLKAGGMLERGTGRIVNIAST-------GGKQGVVHAAPYSASKHGVVGFTK 165
Query: 208 SVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261
++ +E R V + PG V+T ++ + + + + E + ++ +
Sbjct: 166 ALGLELARTGITVNAV--CPGFVETPMAASVREHYSDIWEVSTEEAFDRITARV 217
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 80.9 bits (199), Expect = 1e-18
Identities = 48/210 (22%), Positives = 81/210 (38%), Gaps = 20/210 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G V+L GA RGIG A +L + V+ + A ++ + + +Q
Sbjct: 5 AGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAEEVVAELKKLGAQGVAIQA 63
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D++ S + A +G L+ +++ SG+ + L E T +K + +N
Sbjct: 64 DISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDEL--EVTQELFDK-----VFNLNT 116
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G V + + GG I + G + Y SKAA+
Sbjct: 117 RGQFFVAQQGLKHCRRGGRIILTSSIA----AVMTG------IPNHALYAGSKAAVEGFC 166
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
++ +V+ G K V CI PG V TD+
Sbjct: 167 RAFAVDCGAKGVTVNCI--APGGVKTDMFD 194
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 80.5 bits (198), Expect = 2e-18
Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 22/216 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN-PNGATGLLDLKNRFPERLDVLQ 85
+G V+LV GA RGIG E A +L + K VI N A ++ + ++
Sbjct: 17 EGKVALVTGAGRGIGREMAMELGRRGCK--VIVNYANSTESAEEVVAAIKKNGSDAACVK 74
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
++ V I + + +G L+++ + SG+ + V + +N
Sbjct: 75 ANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGV-------VSFGHVKDVTPEEFDRVFTIN 127
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
G V + L++GG I + + G +S SK A+
Sbjct: 128 TRGQFFVAREAYKHLEIGGRLI--------LMGSITGQAKAVPKHAVYS--GSKGAIETF 177
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN 241
+ ++++ KK V + PG + TD+ R
Sbjct: 178 ARCMAIDMADKKITVNVV--APGGIKTDMYHAVCRE 211
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Score = 80.7 bits (198), Expect = 2e-18
Identities = 51/237 (21%), Positives = 98/237 (41%), Gaps = 24/237 (10%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL--DLKNRFPERLDVLQLD 87
+++ G +R IG A +L ++ + V+ R+ GA L +L + + D
Sbjct: 3 AAVITGGARRIGHSIAVRLHQQGFR--VVVHYRHSEGAAQRLVAELNAARAGSAVLCKGD 60
Query: 88 LTVESTIEASAKSI----KEKYGSLNLLINASGILSIPNVLQPETT----LNKVEKSSLM 139
L++ S++ + I +G ++L+N + +L + T K + +
Sbjct: 61 LSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVA 120
Query: 140 LAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASK 199
+ NAV P+ +I+ + GG R+++VV A D L G+ Y +K
Sbjct: 121 ELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMT----DLPLPGFCVYTMAK 176
Query: 200 AALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------FQRNVPEGKLFTK 250
AL LT++ ++E + V + PG + P ++R VP G+
Sbjct: 177 HALGGLTRAAALELAPRHIRVNAV--APGLSLLPPAMPQETQEEYRRKVPLGQSEAS 231
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 80.1 bits (197), Expect = 3e-18
Identities = 40/213 (18%), Positives = 74/213 (34%), Gaps = 21/213 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
K LV G ++GIG ++ + RN L + ++
Sbjct: 7 KAKTVLVTGGTKGIGHAIVEEFAGFGAV--IHTCARNEYELNECLSKWQKKGFQVTGSVC 64
Query: 87 DLTVESTIEASAKSIKEKY-GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
D ++ E +++ + G L++LIN G + L + T N
Sbjct: 65 DASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTL--DYTAEDFSF-----HISTN 117
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
+ + PLLK G G ++ +A + + Y A+K ALNQL
Sbjct: 118 LESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSAS---------VGSIYSATKGALNQL 168
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
++++ E+ + P + T L+
Sbjct: 169 ARNLACEWASDGIRANAV--APAVIATPLAEAV 199
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Score = 78.9 bits (194), Expect = 5e-18
Identities = 43/218 (19%), Positives = 79/218 (36%), Gaps = 26/218 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
K L+ GA+ GIG + ++ + ++A + P + +
Sbjct: 4 KDKAVLITGAAHGIGRATLELFAKEGAR--LVACDIEEGPLREAAEAVGAHP-----VVM 56
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+ +++E G L+ +++ +GI + K+ L VN
Sbjct: 57 DVADPASVERGFAEALAHLGRLDGVVHYAGI-------TRDNFHWKMPLEDWELVLRVNL 109
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G LV K S ++ G A L G +Y AS A + LT
Sbjct: 110 TGSFLVAKAASEAMREKNPGSIVLTASRVYLGNL----------GQANYAASMAGVVGLT 159
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
+++++E GR V + PG ++T ++ V E
Sbjct: 160 RTLALELGRWGIRVNTL--APGFIETRMTAKVPEKVRE 195
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 78.2 bits (192), Expect = 1e-17
Identities = 50/227 (22%), Positives = 86/227 (37%), Gaps = 21/227 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
KG +LV G S+GIG ++L + V RN L++ ++
Sbjct: 5 KGTTALVTGGSKGIGYAIVEELAGLGAR--VYTCSRNEKELDECLEIWREKGLNVEGSVC 62
Query: 87 DLTVESTIEASAKSIKEKY-GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
DL + + +++ + G LN+L+N +G+ + + N
Sbjct: 63 DLLSRTERDKLMQTVAHVFDGKLNILVNNAGV-------VIHKEAKDFTEKDYNIIMGTN 115
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
+ + PLLK G ++ +A G + L Y ASK A+NQ+
Sbjct: 116 FEAAYHLSQIAYPLLKASQNGNVIFLSSIA---------GFSALPSVSLYSASKGAINQM 166
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEF 252
TKS++ E+ + V + PG + T L + P K F
Sbjct: 167 TKSLACEWAKDNIRVNSV--APGVILTPLVETAIKKNPHQKEEIDNF 211
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 78.2 bits (192), Expect = 1e-17
Identities = 41/222 (18%), Positives = 86/222 (38%), Gaps = 21/222 (9%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD--LKNRFPERLD 82
++ V L+ G G+G A +L + K + + G L+ +
Sbjct: 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAK--LSLVDVSSEGLEASKAAVLETAPDAEVL 58
Query: 83 VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAY 142
D++ E+ +EA + E++G ++ N +GI N + +
Sbjct: 59 TTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTE------SFTAAEFDKVV 112
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
+N G L ++ + +++ G+G+ + A V + +G Y A+K +
Sbjct: 113 SINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRG---------IGNQSGYAAAKHGV 163
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
LT++ +VE+GR + I PG + T + + +
Sbjct: 164 VGLTRNSAVEYGRYGIRINAI--APGAIWTPMVENSMKQLDP 203
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Score = 77.5 bits (190), Expect = 2e-17
Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 23/221 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
+G ++LV GASRGIG A+ L + K VI T + NGA + + L L
Sbjct: 3 EGKIALVTGASRGIGRAIAETLAARGAK--VIGTATSENGAQ---AISDYLGANGKGLML 57
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
++T ++IE+ + I+ ++G +++L+N +GI +++ + E N
Sbjct: 58 NVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEW-------NDIIETNL 110
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
+ K + + G + + + VG++G+ GG +Y A+KA L +
Sbjct: 111 SSVFRLSKAVMRAMMKKRHG------RIITIGSVVGTMGN---GGQANYAAAKAGLIGFS 161
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL 247
KS++ E + V + PG ++TD++R + G L
Sbjct: 162 KSLAREVASRGITVNVV--APGFIETDMTRALSDDQRAGIL 200
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 77.0 bits (189), Expect = 3e-17
Identities = 45/215 (20%), Positives = 81/215 (37%), Gaps = 20/215 (9%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
V+LV GA RGIG E AK L + VI R ++D F D++
Sbjct: 12 VALVTGAGRGIGREIAKMLAKSVSH--VICISRTQKSCDSVVDEIKSFGYESSGYAGDVS 69
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
+ I I ++ +++ IL + + +++ N
Sbjct: 70 KKEEISEVINKILTEHKNVD-------ILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSL 122
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
+ + +S + G + N+S+ VG G G +Y +SKA + TKS+
Sbjct: 123 FYITQPISKRMINNRYG------RIINISSIVGLTG---NVGQANYSSSKAGVIGFTKSL 173
Query: 210 SVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
+ E + V I PG + +D++ + +
Sbjct: 174 AKELASRNITVNAI--APGFISSDMTDKISEQIKK 206
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.8 bits (188), Expect = 4e-17
Identities = 38/213 (17%), Positives = 79/213 (37%), Gaps = 14/213 (6%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLLD-LKNRFPE-RLDV 83
V ++ GASRG G A QL G ++ + R+ + L + L + P+ ++ +
Sbjct: 5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVL 64
Query: 84 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYE 143
DL E+ ++ +++E L + + LN + + + +
Sbjct: 65 AAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWA 124
Query: 144 VNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALN 203
+N + + + + V + + GW Y A KAA +
Sbjct: 125 LNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSL-------CALQPYKGWGLYCAGKAARD 177
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
L + ++ E + V + PG +D D+ +
Sbjct: 178 MLYQVLAAE----EPSVRVLSYAPGPLDNDMQQ 206
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 76.3 bits (187), Expect = 4e-17
Identities = 41/218 (18%), Positives = 75/218 (34%), Gaps = 26/218 (11%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G LV GA+ GIG + ++A R L + +
Sbjct: 4 SGKTILVTGAASGIGRAALDLFAREGAS--LVAVDREER---LLAEAVAALEAEAIAVVA 58
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D++ +EA E++G L+ + + +G+ + + VN
Sbjct: 59 DVSDPKAVEAVFAEALEEFGRLHGVAHFAGV-------AHSALSWNLPLEAWEKVLRVNL 111
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G LV + +L+ GG+ + GS+ G Y A K + L
Sbjct: 112 TGSFLVARKAGEVLEEGGSLV------------LTGSVAGLGAFGLAHYAAGKLGVVGLA 159
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
+++++E RK V + PG + T ++ E
Sbjct: 160 RTLALELARKGVRVNVL--LPGLIQTPMTAGLPPWAWE 195
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 76.2 bits (187), Expect = 6e-17
Identities = 38/210 (18%), Positives = 80/210 (38%), Gaps = 21/210 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G +++ GA GIG E A V+ + N + A ++D + + +
Sbjct: 10 DGKCAIITGAGAGIGKEIAITFATAGAS--VVVSDINADAANHVVDEIQQLGGQAFACRC 67
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T E + A A K G +++L+N +G P + + ++ + ++
Sbjct: 68 DITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQ 127
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
+ + K+ + +N+ SY +SKAA + L
Sbjct: 128 LVAPEMEKNGGG-----------------VILTITSMAAENKNINMTSYASSKAAASHLV 170
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
++++ + G K + + PG + TD +
Sbjct: 171 RNMAFDLGEKN--IRVNGIAPGAILTDALK 198
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 74.8 bits (183), Expect = 2e-16
Identities = 41/234 (17%), Positives = 77/234 (32%), Gaps = 22/234 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL--DLKNRFPERLDVL 84
KG V++V G++ GIGL A L + ++ + L + ++
Sbjct: 3 KGKVAVVTGSTSGIGLGIATALAAQGAD--IVLNGFGDAAEIEKVRAGLAAQHGVKVLYD 60
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
DL+ + + + G +++L+N +Q + +
Sbjct: 61 GADLSKGEAVRGLVDNAVRQMGRIDILVN-------NAGIQHTALIEDFPTEKWDAILAL 113
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
N P +K G G ++A G +Y A+K +
Sbjct: 114 NLSAVFHGTAAALPHMKKQGFGRIINIASAH---------GLVASANKSAYVAAKHGVVG 164
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLL 258
TK ++E + I PG V T L + E +E + ++LL
Sbjct: 165 FTKVTALETAGQGITANAI--CPGWVRTPLVEKQISALAEKNGVDQETAARELL 216
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 75.2 bits (184), Expect = 2e-16
Identities = 32/219 (14%), Positives = 74/219 (33%), Gaps = 20/219 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD-LKNRFPERLDVLQ 85
+G V+ + G G+G L + + R + + + ++ ++ +Q
Sbjct: 24 QGKVAFITGGGTGLGKGMTTLLSSLGAQ--CVIASRKMDVLKATAEQISSQTGNKVHAIQ 81
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
D+ ++ + + + G N++IN + N + P L+ ++
Sbjct: 82 CDVRDPDMVQNTVSELIKVAGHPNIVINN----AAGNFISPTERLSPNAWKTITDIVLNG 137
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
L I + G + + + A GS ++KA + +
Sbjct: 138 TAFVTLEIGKQLIKAQKGAAFL-----SITTIYAETGSG------FVVPSASAKAGVEAM 186
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
+KS++ E+G+ I PG + T +
Sbjct: 187 SKSLAAEWGKYGMRFNVI--QPGPIKTKGAFSRLDPTGT 223
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.2 bits (182), Expect = 3e-16
Identities = 45/212 (21%), Positives = 84/212 (39%), Gaps = 27/212 (12%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G +LV GA +GIG + K L K V+A R + L+ L P ++ + +
Sbjct: 4 SGLRALVTGAGKGIGRDTVKALHASGAK--VVAVTRT---NSDLVSLAKECP-GIEPVCV 57
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
DL E G ++LL+N + + +V K + ++ VN
Sbjct: 58 DLGDWDATEK----ALGGIGPVDLLVNNAAL-------VIMQPFLEVTKEAFDRSFSVNL 106
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
V + ++ + N+S+ V + +Y ++K A+ LT
Sbjct: 107 RSVFQVSQMVAR-----DMINRGVPGSIVNVSSMVAHVT---FPNLITYSSTKGAMTMLT 158
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
K++++E G K + ++P V TD+ +
Sbjct: 159 KAMAMELGPHK--IRVNSVNPTVVLTDMGKKV 188
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Score = 73.3 bits (179), Expect = 7e-16
Identities = 42/232 (18%), Positives = 81/232 (34%), Gaps = 19/232 (8%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
V+LV GA +GIG A +L++ V N A + N+ +++D++
Sbjct: 3 VALVTGAGQGIGKAIALRLVKDGFA--VAIADYNDATAKAVASEINQAGGHAVAVKVDVS 60
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
+ A+ + ++ G ++++N +G+ P T + + + Y +N G
Sbjct: 61 DRDQVFAAVEQARKTLGGFDVIVNNAGV-------APSTPIESITPEIVDKVYNINVKGV 113
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
I I+ + + G Y +SK A+ LT++
Sbjct: 114 IWGIQAAVE--------AFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTA 165
Query: 210 SVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261
+ + V PG V T + R V E + + I
Sbjct: 166 ARDLAPLGITVNGY--CPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRI 215
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.5 bits (177), Expect = 1e-15
Identities = 36/247 (14%), Positives = 77/247 (31%), Gaps = 33/247 (13%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
+ LV G +G + +N V + N ++++
Sbjct: 1 EARRVLVYGGRGALGSRCVQAFRARNWW--VASIDVVENEEA----------SASVIVKM 48
Query: 87 DLTVESTIEASAKSIKEKYGS--LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
+ + + + G ++ ++ +G + N N L ++
Sbjct: 49 TDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKN------CDLMWKQ 102
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI-GDNRLGGWHSYRASKAALN 203
+ + + LK GG G+ + G Y +K A++
Sbjct: 103 SIWTSTISSHLATKHLKEGGLLT------------LAGAKAALDGTPGMIGYGMAKGAVH 150
Query: 204 QLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINN 263
QL +S++ + I + P T+DT ++R EF V+ + I
Sbjct: 151 QLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSMPEADFSSWTPLEFLVETFHDWITG 210
Query: 264 IKSHDNG 270
K ++G
Sbjct: 211 NKRPNSG 217
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.6 bits (177), Expect = 2e-15
Identities = 52/247 (21%), Positives = 88/247 (35%), Gaps = 24/247 (9%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKG-CVIATCRNPNGATGLLDLKNRF---PERLDVLQ 85
V L+ G S GIGL A +L + V AT R+ L + P L+ LQ
Sbjct: 4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQ 63
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
LD+ ++ A+ + + E +L L L + + ++ +VN
Sbjct: 64 LDVRDSKSVAAARERVTEGRVD---------VLVCNAGLGLLGPLEALGEDAVASVLDVN 114
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
VG + +++ P +K G+G V ++ +G Y ASK AL L
Sbjct: 115 VVGTVRMLQAFLPDMKRRGSGRVL---VTGSVGGLMGL------PFNDVYCASKFALEGL 165
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNIK 265
+S++V + I G V T + E T + + + + K
Sbjct: 166 CESLAVLLLPFGVHLSLI--ECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSK 223
Query: 266 SHDNGKF 272
Sbjct: 224 QVFREAA 230
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 71.6 bits (175), Expect = 3e-15
Identities = 47/218 (21%), Positives = 85/218 (38%), Gaps = 23/218 (10%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G V+LV G +RG+G + ++ + K V+ + + + L
Sbjct: 5 TGKVALVSGGARGMGASHVRAMVAEGAK--VVFGDILDEEGK---AMAAELADAARYVHL 59
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T + +A+ + +G L++L+N +GIL+I + + +VN
Sbjct: 60 DVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIE-------DYALTEWQRILDVNL 112
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G L I+ + A ++ G H Y A+K A+ LT
Sbjct: 113 TGVFLGIRAVVK---------PMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLT 163
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
KS ++E G V I HPG V T ++ ++ +
Sbjct: 164 KSTALELGPSGIRVNSI--HPGLVKTPMTDWVPEDIFQ 199
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Score = 71.3 bits (174), Expect = 3e-15
Identities = 41/211 (19%), Positives = 84/211 (39%), Gaps = 20/211 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NGATGLLDLKNRFPERLDVLQ 85
+G V ++ G+S G+G A + + K V+ R+ + A +L+ + ++
Sbjct: 6 EGKVVVITGSSTGLGKSMAIRFATEKAK--VVVNYRSKEDEANSVLEEIKKVGGEAIAVK 63
Query: 86 LDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVN 145
D+TVES + +S +++G L+++IN +G+ N + +
Sbjct: 64 GDVTVESDVINLVQSAIKEFGKLDVMINNAGLE---NPVSSHEMSLSDWNKVIDTNLTGA 120
Query: 146 AVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQL 205
+G IK+ G V + Y ASK + +
Sbjct: 121 FLGSREAIKYFVENDIKGTVINMSSVHEK------------IPWPLFVHYAASKGGMKLM 168
Query: 206 TKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236
T+++++E+ K V I PG ++T ++
Sbjct: 169 TETLALEYAPKGIRVNNI--GPGAINTPINA 197
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 71.0 bits (173), Expect = 4e-15
Identities = 43/220 (19%), Positives = 72/220 (32%), Gaps = 19/220 (8%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVL 84
K+ G V LV GA IGL A +L E+ + N
Sbjct: 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTA--IALLDMNREALEKAEASVREKGVEARSY 59
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
D+T E + + S+ +G ++ L N +G +Q + +
Sbjct: 60 VCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQD------------YPSDDF 107
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
V I V L V I ++ + N ++ G G +Y SK A+
Sbjct: 108 ARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKG---PPNMAAYGTSKGAIIA 164
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
LT++ +++ V I PG + Q +
Sbjct: 165 LTETAALDLAPYNIRVNAI--SPGYMGPGFMWERQVELQA 202
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Score = 70.4 bits (172), Expect = 6e-15
Identities = 33/215 (15%), Positives = 65/215 (30%), Gaps = 25/215 (11%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
+V G+ A +L E V + L +P QL E
Sbjct: 4 IVTNVKHFGGMGSALRLSEAGHT--VACHDESFKQKDELEAFAETYP------QLKPMSE 55
Query: 92 STIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPIL 151
+++ YG +++L++ ++K A E + P
Sbjct: 56 QEPAELIEAVTSAYGQVDVLVSNDIF------APEFQPIDKYAVEDYRGAVEALQIRPFA 109
Query: 152 VIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSV 211
++ ++ +K +G + +Y +++A L ++S
Sbjct: 110 LVNAVASQMKKRKSGHIIFITSATP---------FGPWKELSTYTSARAGACTLANALSK 160
Query: 212 EFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGK 246
E G PV I P + ++ S F P
Sbjct: 161 ELGEYNIPVFAI--GPNYLHSEDSPYFYPTEPWKT 193
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 68.0 bits (165), Expect = 4e-14
Identities = 23/222 (10%), Positives = 62/222 (27%), Gaps = 31/222 (13%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE 91
+V G +G + + V+ + N + ++ +
Sbjct: 6 IVYGGKGALGSAILEFFKKNGYT--VLNIDLSANDQ----------ADSNILVDGNKNWT 53
Query: 92 STIEASAKSIKE--KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
++ + + ++ + + +K + L + +
Sbjct: 54 EQEQSILEQTASSLQGSQVDGVFCV------AGGWAGGSASSKDFVKNADLMIKQSVWSS 107
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
+ K + + ++ A Y +KAA++ LT S+
Sbjct: 108 AIAAKLATT--------HLKPGGLLQLTGAAAAMGPTPS---MIGYGMAKAAVHHLTSSL 156
Query: 210 SVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKE 251
+ + D + + P T+DT ++R + N
Sbjct: 157 AAKDSGLPDNSAVLTIMPVTLDTPMNRKWMPNADHSSWTPLS 198
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 67.5 bits (164), Expect = 6e-14
Identities = 40/215 (18%), Positives = 76/215 (35%), Gaps = 23/215 (10%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
+LV G + G+G A L + + V+ G E L ++ D+T
Sbjct: 3 SALVTGGASGLGRAAALALKARGYR--VVVLDLRREG------------EDLIYVEGDVT 48
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
E + + +E+ ++ A L+ + + + + L EVN +G
Sbjct: 49 REEDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVL----EVNLLGT 104
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
V++ + ++ E V+ N ++ G G +Y ASK + LT
Sbjct: 105 FNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG---QIGQAAYAASKGGVVALTLPA 161
Query: 210 SVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
+ E + + + PG DT L +
Sbjct: 162 ARELAGWG--IRVVTVAPGLFDTPLLQGLPEKAKA 194
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 67.1 bits (163), Expect = 1e-13
Identities = 44/235 (18%), Positives = 92/235 (39%), Gaps = 22/235 (9%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
G +L+ G++RGIG FA+ + + + V N A + L
Sbjct: 4 DGKTALITGSARGIGRAFAEAYVREGAR--VAIADINLEAAR---ATAAEIGPAACAIAL 58
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T +++I+ + +++GS++ I + E T ++ + +N
Sbjct: 59 DVTDQASIDRCVAELLDRWGSID--ILVNNAALFDLAPIVEITRESYDR-----LFAINV 111
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G + +++ ++ + GG G + +A+ + R G Y A+KAA+ LT
Sbjct: 112 SGTLFMMQAVARAMIAGGRG--GKIINMASQAGRRGEA------LVGVYCATKAAVISLT 163
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNII 261
+S + R V I PG VD + + + + +++ +
Sbjct: 164 QSAGLNLIRHGINVNAI--APGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAV 216
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 66.3 bits (161), Expect = 2e-13
Identities = 43/215 (20%), Positives = 95/215 (44%), Gaps = 19/215 (8%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
V +V GASRGIG A L + K ++ R+ A + + + D++
Sbjct: 3 VVVVTGASRGIGKAIALSLGKAGCK-VLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVS 61
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGP 149
E+ +EA K+ + +G++++++N +GI +++ + + ++N G
Sbjct: 62 KEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKS-------QWDEVIDLNLTGV 114
Query: 150 ILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSV 209
L + + ++ G + N+++ VG IG G +Y A+KA + +K+
Sbjct: 115 FLCTQAATKIMMKKRKG------RIINIASVVGLIG---NIGQANYAAAKAGVIGFSKTA 165
Query: 210 SVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
+ E + V + PG + +D++ ++ +
Sbjct: 166 AREGASRNINVNVV--CPGFIASDMTAKLGEDMEK 198
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Score = 66.4 bits (161), Expect = 2e-13
Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 19/203 (9%)
Query: 27 KGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVL 84
G +LV G + R +G A +L E G +A + +
Sbjct: 7 SGKKALVMGVTNQRSLGFAIAAKLKEA---GAEVALSYQAERLRPEAEKLAEALGGALLF 63
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
+ D+T + ++A +KE +G L+ L++ ++ E + +LA EV
Sbjct: 64 RADVTQDEELDALFAGVKEAFGGLDYLVH---AIAFAPREAMEGRYIDTRRQDWLLALEV 120
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
+A + V + PLL+ GG + L+ + ++ +KAAL
Sbjct: 121 SAYSLVAVARRAEPLLREGGGIV--------TLTYYASEKV---VPKYNVMAIAKAALEA 169
Query: 205 LTKSVSVEFGRKKDPVICILLHP 227
+ ++ E G K V I P
Sbjct: 170 SVRYLAYELGPKGVRVNAISAGP 192
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.0 bits (155), Expect = 1e-12
Identities = 49/231 (21%), Positives = 85/231 (36%), Gaps = 34/231 (14%)
Query: 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVL 84
+ G V ++ A++GIG A + K VIAT N + L LDV
Sbjct: 3 RLDGKVIILTAAAQGIGQAAALAFAREGAK--VIATDINESKLQELEKYPGIQTRVLDV- 59
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
T + + L++L N +G T+ E+ + +
Sbjct: 60 --------TKKKQIDQFANEVERLDVLFNVAGF-------VHHGTVLDCEEKDWDFSMNL 104
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHS---YRASKAA 201
N L+IK P + +G +++ VA+ + G + Y +KAA
Sbjct: 105 NVRSMYLMIKAFLPKMLAQKSGNIINMSSVAS-----------SVKGVVNRCVYSTTKAA 153
Query: 202 LNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEF 252
+ LTKSV+ +F ++ C+ TVDT + + + +F
Sbjct: 154 VIGLTKSVAADFIQQGIRCNCVCPG--TVDTPSLQERIQARGNPEEARNDF 202
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 63.2 bits (153), Expect = 2e-12
Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 31/221 (14%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
LV G +RGIGL A++L K V T R P+ L +++
Sbjct: 6 VSRSVLVTGGNRGIGLAIAQRLAADGHK--VAVTHRGSGA-----------PKGLFGVEV 52
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
D+T ++ + +++E G + +L++ +G+ + L ++ + N
Sbjct: 53 DVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL-------SADAFLMRMTEEKFEKVINANL 105
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
G V + S ++ G + V+ L +Y ASKA + +
Sbjct: 106 TGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIG---------NQANYAASKAGVIGMA 156
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL 247
+S++ E K V ++ PG +DTD++R + +G L
Sbjct: 157 RSIAREL--SKANVTANVVAPGYIDTDMTRALDERIQQGAL 195
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Score = 62.8 bits (152), Expect = 3e-12
Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 35/212 (16%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
+ LV ASRGIG A L ++ + V RN +L R R V
Sbjct: 3 RDKGVLVLAASRGIGRAVADVLSQEGAE--VTICARNE-------ELLKRSGHRYVV--C 51
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
DL + EK +++L+ +G +++ A +
Sbjct: 52 DLR------KDLDLLFEKVKEVDILVLNAGG-------PKAGFFDELTNEDFKEAIDSLF 98
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
+ I ++++ P +K G G + + + + ++ +++ AL
Sbjct: 99 LNMIKIVRNYLPAMKEKGWGRIVAITSFS---------VISPIENLYTSNSARMALTGFL 149
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPF 238
K++S E V C+ PG +T+ +
Sbjct: 150 KTLSFEVAPYGITVNCV--APGWTETERVKEL 179
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.5 bits (148), Expect = 8e-12
Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 11/218 (5%)
Query: 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQL 86
KG V+++ G + G+GL A++L+ + + +G
Sbjct: 4 KGLVAVITGGASGLGLATAERLVGQGAS--AVLLDLPNSGGEAQAKKLGNNCVFAPADVT 61
Query: 87 DLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNA 146
T A AK + +++ + +VN
Sbjct: 62 SEKDVQTALALAKGKFGRVDV----AVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNL 117
Query: 147 VGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLT 206
+G VI+ ++ + V+ N ++ G G +Y ASK + +T
Sbjct: 118 MGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG---QVGQAAYSASKGGIVGMT 174
Query: 207 KSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPE 244
++ + + + + PG T L V
Sbjct: 175 LPIARDLAPIG--IRVMTIAPGLFGTPLLTSLPEKVCN 210
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 50.3 bits (119), Expect = 6e-08
Identities = 41/229 (17%), Positives = 74/229 (32%), Gaps = 29/229 (12%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT 89
+ ++ G + GIG K L + ++ A + DL
Sbjct: 3 IIVISGCATGIGAATRKVLEAAGHQ--IVGIDIRD--AEVIADLSTA------------- 45
Query: 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLA-------Y 142
E +A A + + ++ L+ +G+ VL ++N + LM A
Sbjct: 46 -EGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKG 104
Query: 143 EVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAAL 202
A I + + + A A V G+ GG +Y SK AL
Sbjct: 105 HQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQ--GGNLAYAGSKNAL 162
Query: 203 NQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKE 251
+ + +G + I PG +T L + ++ G+ K
Sbjct: 163 TVAVRKRAAAWGEAGVRLNTI--APGATETPLLQAGLQDPRYGESIAKF 209
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Score = 47.6 bits (112), Expect = 5e-07
Identities = 27/209 (12%), Positives = 65/209 (31%), Gaps = 20/209 (9%)
Query: 27 KGGVSLVQGASR--GIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVL 84
G LV G + I A+ + + + + T +N + + + + +
Sbjct: 4 SGKRILVTGVASKLSIAYGIAQAMHREGAE--LAFTYQNDKLKGRVEEFAAQLGSDIVLQ 61
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEV 144
S A+ K + + P +N V + +A+++
Sbjct: 62 CDVAEDASIDTMFAELGKVWPKFDGFVHSIGFA---PGDQLDGDYVNAVTREGFKIAHDI 118
Query: 145 NAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQ 204
++ + + K +L G + LS + ++ +KA+L
Sbjct: 119 SSYSFVAMAKACRSMLNPGS--------ALLTLSYLGAERA---IPNYNVMGLAKASLEA 167
Query: 205 LTKSVSVEFGRKKDPVICILLHPGTVDTD 233
+ ++ G + V + G + T
Sbjct: 168 NVRYMANAMGPEG--VRVNAISAGPIRTL 194
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Score = 44.3 bits (103), Expect = 6e-06
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 19/106 (17%)
Query: 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN-------------- 75
V+LV GA++ +G A+ L + + R+ A L N
Sbjct: 4 VALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEANALSATLNARRPNSAITVQADL 62
Query: 76 ----RFPERLDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGI 117
P +T+ + + +G ++L+N +
Sbjct: 63 SNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASS 108
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Score = 42.3 bits (98), Expect = 3e-05
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 26 WK-GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR 76
WK G LV G + G+G + A+ L + ++ R+ A G +L
Sbjct: 6 WKPTGTVLVTGGTGGVGGQIARWLARRGAP-HLLLVSRSGPDADGAGELVAE 56
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 40.6 bits (94), Expect = 7e-05
Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 30/194 (15%)
Query: 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPER 80
+A KG ++V + +G+ A L V+ + + RF
Sbjct: 16 AAGGSVKGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDKAQAAADSVNKRFKVN 74
Query: 81 LDVLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLML 140
+ + S E + + A I L P+ ++
Sbjct: 75 VTAAETA---------DDASRAEAVKGAHFVFTAGAI---GLELLPQAAWQNESSIEIV- 121
Query: 141 AYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKA 200
+ NA P+ + + D G++G G + +A
Sbjct: 122 -ADYNAQPPLGIGGIDAT-----------DKGKEYGGKRAFGALG----IGGLKLKLHRA 165
Query: 201 ALNQLTKSVSVEFG 214
+ +L +S F
Sbjct: 166 CIAKLFESSEGVFD 179
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 37.9 bits (86), Expect = 7e-04
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 32 LVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD 72
LV GAS G K+L E +DK R+ G +
Sbjct: 7 LVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG 47
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Score = 37.0 bits (84), Expect = 0.002
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 27 KGGVSLVQGAS--RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVL 84
KG L+ G + + I A+ + + T N + + + V
Sbjct: 4 KGKKGLIVGVANNKSIAYGIAQSCFNQGAT--LAFTYLNESLEKRVRPIAQELNSPY-VY 60
Query: 85 QLDLTVESTIEASAKSIKEKYGSLNLLINASG 116
+LD++ E ++ S+K+ GSL+ ++++
Sbjct: 61 ELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVA 92
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 36.7 bits (83), Expect = 0.002
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL--KNRFPERL 81
V +G + LV GA+ + +QLLE K V T R+ + L
Sbjct: 7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYK--VRGTARSASKLANLQKRWDAKYPGRFE 64
Query: 82 DVLQLDLT 89
+ D+
Sbjct: 65 TAVVEDML 72
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 36.0 bits (81), Expect = 0.004
Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 3/64 (4%)
Query: 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQ 85
W+G V G + G + L V L + R + +
Sbjct: 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGAT--VKGYSLTAPTVPSLFETA-RVADGMQSEI 62
Query: 86 LDLT 89
D+
Sbjct: 63 GDIR 66
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 282 | |||
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 100.0 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 100.0 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 100.0 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 100.0 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 100.0 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 100.0 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 100.0 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 100.0 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 100.0 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 100.0 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 100.0 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 100.0 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 100.0 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 100.0 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 100.0 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 100.0 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 100.0 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 100.0 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 100.0 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 100.0 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 100.0 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 100.0 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 100.0 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 100.0 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 100.0 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 100.0 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 100.0 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 100.0 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 100.0 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 100.0 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 100.0 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 100.0 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 100.0 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 100.0 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 100.0 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 100.0 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 100.0 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 100.0 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 100.0 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 100.0 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 100.0 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 100.0 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 100.0 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 100.0 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 100.0 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 100.0 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 100.0 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 100.0 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 100.0 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 100.0 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 100.0 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 100.0 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 100.0 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 100.0 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 100.0 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 100.0 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 100.0 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 100.0 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 100.0 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 100.0 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.97 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.78 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.77 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.72 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.69 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.68 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.67 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.66 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.65 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.65 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.63 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.63 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.63 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.6 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.59 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.59 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.59 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.58 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.58 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.58 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.56 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.53 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.53 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.52 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.42 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.29 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.23 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.22 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.15 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.09 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.08 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 98.9 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.81 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 98.18 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.72 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.72 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.69 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.69 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.66 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.54 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.53 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 97.49 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.44 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.43 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.32 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.28 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.27 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.24 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.23 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.21 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.21 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.2 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.19 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 97.12 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.09 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.0 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.96 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.91 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.9 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.87 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.84 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.82 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.8 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.74 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.73 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.68 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.63 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.55 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.53 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.45 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.45 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.38 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.33 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.32 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 96.31 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.26 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 96.25 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.2 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.19 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.18 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.11 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.09 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.08 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.04 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.02 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 95.88 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.78 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.77 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 95.75 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 95.65 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 95.61 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 95.5 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 95.5 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 95.49 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 95.45 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 95.45 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 95.4 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 95.35 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.31 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.26 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.22 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 94.85 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 94.73 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.67 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 94.58 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.57 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.44 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 93.92 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.91 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 93.86 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 93.82 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 93.8 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 93.68 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 93.63 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 93.59 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 93.34 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 93.31 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 93.28 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 93.16 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 93.02 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 92.96 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 92.94 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.85 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 92.84 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 92.75 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 92.69 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.59 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 92.52 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 91.39 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 91.37 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 91.17 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 91.13 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 91.04 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 90.97 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 90.92 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 90.57 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 90.52 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 90.19 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 90.16 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 89.85 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 89.81 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 89.15 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 88.94 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 88.93 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 88.87 | |
| d2csua3 | 163 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 88.7 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 88.25 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 88.18 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 88.1 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 88.08 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 87.84 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 87.82 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 87.56 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 87.55 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 87.48 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 87.43 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 87.27 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 87.24 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 87.21 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 87.1 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 87.06 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 86.87 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 86.4 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 86.39 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 86.3 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 86.29 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 86.21 | |
| d2fr1a2 | 209 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 85.89 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 85.68 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 85.63 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 85.49 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 85.26 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 85.08 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 85.07 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 84.96 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 84.87 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 84.81 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 84.56 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 84.46 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 84.33 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 84.31 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 84.11 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 84.07 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 83.92 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 83.26 | |
| d1v71a1 | 318 | Hypothetical protein C320.14 (SPCC320.14, SPCC330. | 83.06 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 83.04 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 82.91 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 82.86 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 82.85 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 82.5 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 82.47 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 82.3 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 82.23 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 82.15 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 82.0 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 81.92 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 80.68 | |
| d1qkia1 | 203 | Glucose 6-phosphate dehydrogenase, N-terminal doma | 80.22 |
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-51 Score=346.92 Aligned_cols=239 Identities=21% Similarity=0.296 Sum_probs=218.0
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.|+++||++|||||++|||+++|++|+++|++ |++++|++++++++.+++++.+.++.+++||++|+++++++++++.
T Consensus 6 ~m~L~gK~alITGas~GIG~aia~~la~~Ga~--V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~ 83 (255)
T d1fmca_ 6 NLRLDGKCAIITGAGAGIGKEIAITFATAGAS--VVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAI 83 (255)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHTTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999998 9999999999888888777778899999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++||+||+||||||... ..++ +.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..+
T Consensus 84 ~~~g~iDilvnnAG~~~-------~~~~-e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g------~Ii~isS~~~ 149 (255)
T d1fmca_ 84 SKLGKVDILVNNAGGGG-------PKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGG------VILTITSMAA 149 (255)
T ss_dssp HHHSSCCEEEECCCCCC-------CCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGG
T ss_pred HHcCCCCEeeeCCcCCC-------CCcc-cCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccccc------ccccccccch
Confidence 99999999999999874 3333 67889999999999999999999999999988765 8999999998
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCChHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFTKEFS 253 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~~~~~ 253 (282)
..+ .++..+|+++|+|+.+|+|+++.|++++ +||||+|+||+++|++.+.. ....|..+..+|+|+
T Consensus 150 ~~~---~~~~~~Y~asKaal~~lt~~lA~el~~~--gIrVN~I~PG~i~T~~~~~~~~~e~~~~~~~~~pl~R~g~pedv 224 (255)
T d1fmca_ 150 ENK---NINMTSYASSKAAASHLVRNMAFDLGEK--NIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDI 224 (255)
T ss_dssp TCC---CTTCHHHHHHHHHHHHHHHHHHHHHHTT--TEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCSSCSCBCHHHH
T ss_pred hcc---ccccccchhHHHHHHHHHHHHHHHhCcc--CeEEEEeeeCcCcChHhhccCCHHHHHHHHhcCCCCCCcCHHHH
Confidence 877 6788999999999999999999999999 89999999999999975432 234667788899999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
|+.+.+++++..+++||+.+.+|||++.|
T Consensus 225 A~~v~fL~S~~s~~itG~~i~vDGG~~~~ 253 (255)
T d1fmca_ 225 ANAALFLCSPAASWVSGQILTVSGGGVQE 253 (255)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESTTSCCC
T ss_pred HHHHHHHhCchhcCCcCCEEEECcCcccc
Confidence 99999999999999999999999999876
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=6.1e-51 Score=343.60 Aligned_cols=239 Identities=23% Similarity=0.315 Sum_probs=216.7
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++++||++|||||++|||+++|++|+++|++ |++++|++++++++.+.+++.+.++.++++|++|+++++++++++.
T Consensus 5 ~f~lenKvalITGas~GIG~a~a~~la~~Ga~--V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~ 82 (251)
T d2c07a1 5 YYCGENKVALVTGAGRGIGREIAKMLAKSVSH--VICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKIL 82 (251)
T ss_dssp CCCCSSCEEEEESTTSHHHHHHHHHHTTTSSE--EEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE--EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999998 9999999999888887777778899999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++||+||+||||||... ..+..+.+.++|++.+++|+.+++++++++.|.|++++.| +||++||..+
T Consensus 83 ~~~g~iDilvnnag~~~-------~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G------~IVnisS~~~ 149 (251)
T d2c07a1 83 TEHKNVDILVNNAGITR-------DNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYG------RIINISSIVG 149 (251)
T ss_dssp HHCSCCCEEEECCCCCC-------CCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCE------EEEEECCTHH
T ss_pred HhcCCceeeeecccccc-------ccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCe------EEEEECCHHh
Confidence 99999999999999875 5667788889999999999999999999999999988765 9999999999
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------ccCCCCCCCCChHHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--------QRNVPEGKLFTKEFSV 254 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--------~~~~~~~~~~~~~~~a 254 (282)
..+ .++...|++||+|+.+|+|+++.|++++ +||||+|+||+++|++.+.. ....|..+..+|+|+|
T Consensus 150 ~~~---~~~~~~Y~asKaal~~ltr~lA~el~~~--gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~~~pedvA 224 (251)
T d2c07a1 150 LTG---NVGQANYSSSKAGVIGFTKSLAKELASR--NITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPEEVA 224 (251)
T ss_dssp HHC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCC-----CCHHHHHHHHTTCTTSSCBCHHHHH
T ss_pred cCC---CCCCHHHHHHHHHHHHHHHHHHHHhhhh--CeEEEEEccCCEecccccccCHHHHHHHHhcCCCCCCcCHHHHH
Confidence 877 6778899999999999999999999999 99999999999999987643 3356777888999999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
+.+.+++++...++||+.+.+|||+-|
T Consensus 225 ~~v~fL~S~~s~~itG~~i~vDGG~sp 251 (251)
T d2c07a1 225 NLACFLSSDKSGYINGRVFVIDGGLSP 251 (251)
T ss_dssp HHHHHHHSGGGTTCCSCEEEESTTSCC
T ss_pred HHHHHHhCchhCCCcCcEEEECCCcCc
Confidence 999999999999999999999999865
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.8e-50 Score=338.60 Aligned_cols=238 Identities=23% Similarity=0.324 Sum_probs=213.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccc-cccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL-DLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~-~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
++++||++|||||++|||+++|++|+++|++ |++++|+.+++++.. ++.++++.++.++++|++|+++++++++++.
T Consensus 1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~--V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (251)
T d1vl8a_ 1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCS--VVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVK 78 (251)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999998 999999998887654 4445667789999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+++|+||+||||||+.. ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||+++|..+
T Consensus 79 ~~~g~iDiLVnnAG~~~-------~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G------~Ii~i~S~~~ 145 (251)
T d1vl8a_ 79 EKFGKLDTVVNAAGINR-------RHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNP------SIINIGSLTV 145 (251)
T ss_dssp HHHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSC------EEEEECCGGG
T ss_pred HHcCCCCEEEECCCCCC-------CCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccc------cccccccchh
Confidence 99999999999999875 6778899999999999999999999999999999998876 9999999765
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~~~~ 252 (282)
... +.++...|+++|+++.+|+++++.|++++ |||||+|+||+++|++.+.. ....|..+..+|+|
T Consensus 146 ~~~--~~~~~~~Y~asKaal~~lt~~lA~e~~~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~ped 221 (251)
T d1vl8a_ 146 EEV--TMPNISAYAASKGGVASLTKALAKEWGRY--GIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPED 221 (251)
T ss_dssp TCC--CSSSCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSSCBCGGG
T ss_pred ccc--cCccccchHHHHHhHHHHHHHHHHHhccc--CeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCCCCCCCCHHH
Confidence 432 15667899999999999999999999999 89999999999999997632 23466778889999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+.+.+++++..+++||+.+.+|||+.
T Consensus 222 vA~~v~fL~S~~a~~itG~~i~vDGG~t 249 (251)
T d1vl8a_ 222 LKGVAVFLASEEAKYVTGQIIFVDGGWT 249 (251)
T ss_dssp GHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHhCchhCCCcCcEEEeCcCee
Confidence 9999999999999999999999999974
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=100.00 E-value=5.8e-50 Score=339.18 Aligned_cols=240 Identities=20% Similarity=0.276 Sum_probs=217.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC-cccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN-GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~-~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+|+||++|||||++|||+++|++|+++|++ |++++|+.+ .++++.+++++.+.++.+++||++|+++++++++++.
T Consensus 3 ~dL~gK~alITGas~GIG~aia~~la~~G~~--Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (261)
T d1geea_ 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAK--VVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAI 80 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4799999999999999999999999999998 999999865 4556677777778899999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+++|+||+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.| +.|+++||..+
T Consensus 81 ~~~G~iDiLVnnAG~~~-------~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g-----~~Iv~isS~~~ 148 (261)
T d1geea_ 81 KEFGKLDVMINNAGLEN-------PVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIK-----GTVINMSSVHE 148 (261)
T ss_dssp HHHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCC-----CEEEEECCGGG
T ss_pred HHhCCCCEeeccceecC-------CcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhcccccc-----ccccccccchh
Confidence 99999999999999875 5678889999999999999999999999999999888765 47999999998
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc----------cccCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP----------FQRNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~----------~~~~~~~~~~~~~~~ 252 (282)
..+ .+....|+++|+|+.+|+++|+.|++++ +||||+|+||+++|++... +....|..+..+|+|
T Consensus 149 ~~~---~~~~~~Y~asKaal~~lt~~lA~e~~~~--gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~R~~~ped 223 (261)
T d1geea_ 149 KIP---WPLFVHYAASKGGMKLMTETLALEYAPK--GIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEE 223 (261)
T ss_dssp TSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTSSCBCHHH
T ss_pred ccc---CccccccccCCccchhhHHHHHHHhhhh--CcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCCCCCCCCHHH
Confidence 877 6788999999999999999999999999 8999999999999998653 233466778889999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
+|+.+.+++++..+++||+.+.+|||+.-|
T Consensus 224 iA~~v~fL~S~~s~~itG~~i~vDGG~sl~ 253 (261)
T d1geea_ 224 IAAVAAWLASSEASYVTGITLFADGGMTLY 253 (261)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred HHHHHHHHhCchhcCCcCCeEEECCCeeCC
Confidence 999999999999999999999999998654
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=7e-50 Score=335.15 Aligned_cols=233 Identities=24% Similarity=0.356 Sum_probs=212.4
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.|+||++|||||++|||+++|++|+++|++ |++++|++++++++.+.+ +.++.+++||++|+++++++++++.++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAK--VVFGDILDEEGKAMAAEL---ADAARYVHLDVTQPAQWKAAVDTAVTA 77 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHT---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHh---hCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999999998 999999988776655444 468899999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
+|++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..+..
T Consensus 78 ~g~idilinnAG~~~-------~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G------~Ii~isS~~~~~ 144 (244)
T d1nffa_ 78 FGGLHVLVNNAGILN-------IGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRG------SIINISSIEGLA 144 (244)
T ss_dssp HSCCCEEEECCCCCC-------CBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGGTS
T ss_pred hCCCeEEEECCcccC-------CCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcc------eEEecccccccc
Confidence 999999999999875 6678889999999999999999999999999999988765 999999999987
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---CCCCCCCCChHHHHHHHHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR---NVPEGKLFTKEFSVQKLLNII 261 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~ 261 (282)
+ .++...|+++|+++.+|+|+++.|++++ +||||+|+||+++|++.+...+ +.|..+..+|+|+|+.+.+++
T Consensus 145 ~---~~~~~~Y~asKaal~~ltk~lA~el~~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~pl~R~~~p~diA~~v~fL~ 219 (244)
T d1nffa_ 145 G---TVACHGYTATKFAVRGLTKSTALELGPS--GIRVNSIHPGLVKTPMTDWVPEDIFQTALGRAAEPVEVSNLVVYLA 219 (244)
T ss_dssp C---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCSGGGTTSCTTCSCCSSSSCBCHHHHHHHHHHHH
T ss_pred c---cccccchhhHHHHHHHHHHHHHHHhccc--CEEEEEEeeCCccChhHhhhhHHHHhccccCCCCHHHHHHHHHHHh
Confidence 7 6788999999999999999999999999 9999999999999999775443 455667889999999999999
Q ss_pred hhcCCCCCCceeecCCccc
Q 023441 262 NNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 262 ~~~~~~~~g~~~~~d~~~~ 280 (282)
++..+++||+.+.+|||++
T Consensus 220 s~~s~~itG~~i~vDGG~~ 238 (244)
T d1nffa_ 220 SDESSYSTGAEFVVDGGTV 238 (244)
T ss_dssp SGGGTTCCSCEEEESTTGG
T ss_pred ChhhCCCcCCEEEECCCee
Confidence 9989999999999999985
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-50 Score=339.20 Aligned_cols=233 Identities=26% Similarity=0.404 Sum_probs=212.6
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||++|||||++|||+++|++|+++|++ |++++|+++.++++.+.+ +.++.++++|++|+++++++++++.++
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~--Vv~~~r~~~~l~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAK--VIGTATSENGAQAISDYL---GANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHh---CCCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 689999999999999999999999999998 999999988877665544 457899999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
+|+||+||||||... ..++.+.+.++|++.+++|+.+++.+++.+.|.|++++.| +||++||..+..
T Consensus 76 ~g~iDilVnnAg~~~-------~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G------~II~isS~~~~~ 142 (243)
T d1q7ba_ 76 FGEVDILVNNAGITR-------DNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHG------RIITIGSVVGTM 142 (243)
T ss_dssp TCSCSEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCHHHHH
T ss_pred cCCcceehhhhhhcc-------ccccccccccccccccceeechhhhhHHHHHHHHHHcCCC------EeeeecchhhcC
Confidence 999999999999875 6778889999999999999999999999999999988765 999999999887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------ccCCCCCCCCChHHHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--------QRNVPEGKLFTKEFSVQK 256 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--------~~~~~~~~~~~~~~~a~~ 256 (282)
+ .++...|++||+|+.+|+++++.|++++ +||||+|+||+++|++.+.. ....|..+..+|+|+|+.
T Consensus 143 ~---~~~~~~Y~asKaal~~lt~~lA~ela~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~ 217 (243)
T d1q7ba_ 143 G---NGGQANYAAAKAGLIGFSKSLAREVASR--GITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANA 217 (243)
T ss_dssp C---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCHHHHTSCHHHHHHHHTTCTTSSCBCHHHHHHH
T ss_pred C---CCCCHHHHHHHHHHHHHHHHHHHHhCcc--CeEEEEEecceEechhhhhhhhhHHHHHHhcCCCCCCCCHHHHHHH
Confidence 7 6778899999999999999999999999 89999999999999986532 335667788899999999
Q ss_pred HHHHHhhcCCCCCCceeecCCccc
Q 023441 257 LLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 257 ~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.+++++..+++||+.+.+|||+.
T Consensus 218 v~fL~S~~s~~itGq~i~vdGG~~ 241 (243)
T d1q7ba_ 218 VAFLASDEAAYITGETLHVNGGMY 241 (243)
T ss_dssp HHHHHSGGGTTCCSCEEEESTTSS
T ss_pred HHHHhCchhcCCcCCeEEECCCeE
Confidence 999999989999999999999974
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=100.00 E-value=1.3e-49 Score=334.71 Aligned_cols=235 Identities=18% Similarity=0.256 Sum_probs=204.3
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.|+||++|||||++|||+++|++|+++|++ |++++|+..+. ..+.+++.+.++.+++||++|+++++++++++.++
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~--V~~~~~~~~~~--~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~ 77 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGAD--IAIADLVPAPE--AEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVIST 77 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSCCHH--HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCchHH--HHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 489999999999999999999999999998 99999987542 33444556789999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
||+||+||||||+.. ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||..+..
T Consensus 78 ~G~iDilVnnAG~~~-------~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G------~Iv~isS~~~~~ 144 (247)
T d2ew8a1 78 FGRCDILVNNAGIYP-------LIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWG------RIINLTSTTYWL 144 (247)
T ss_dssp HSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGGGS
T ss_pred cCCCCEEEECCCCCC-------CCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCC------Cccccccchhcc
Confidence 999999999999975 6788899999999999999999999999999999988765 999999999887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc----------CCCCCCCCChHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR----------NVPEGKLFTKEFSV 254 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~----------~~~~~~~~~~~~~a 254 (282)
+ .+....|++||+++.+|+++++.|++++ |||||+|+||+++|++.+.... ..+..+..+|+|+|
T Consensus 145 ~---~~~~~~Y~asKaal~~ltk~lA~ela~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~l~r~~~pedvA 219 (247)
T d2ew8a1 145 K---IEAYTHYISTKAANIGFTRALASDLGKD--GITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPLDLT 219 (247)
T ss_dssp C---CSSCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCC------------------CTTSSSCSCCCTHHHH
T ss_pred c---CcccccchhhhccHHHHHHHHHHHhccc--CeEEEEEeeCCCCCccccccccchhHHHHHHHhccCCCCCCHHHHH
Confidence 7 6778899999999999999999999999 8999999999999998764221 12345677999999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
+.+.+++++..+++||+.+.+|||++.
T Consensus 220 ~~v~fL~S~~s~~itG~~i~vDGG~~~ 246 (247)
T d2ew8a1 220 GAAAFLASDDASFITGQTLAVDGGMVR 246 (247)
T ss_dssp HHHHHHTSGGGTTCCSCEEEESSSCCC
T ss_pred HHHHHHhCchhcCCcCCeEEECCCEec
Confidence 999999999899999999999999864
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=100.00 E-value=4.7e-50 Score=339.62 Aligned_cols=238 Identities=20% Similarity=0.244 Sum_probs=218.1
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++|+||++|||||++|||+++|++|+++|++ |++++|++++++++.+.+.+.+.++.+++||++|+++++++++++.
T Consensus 3 ~f~L~GK~alITGas~GIG~aia~~la~~Ga~--V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (259)
T d2ae2a_ 3 RWNLEGCTALVTGGSRGIGYGIVEELASLGAS--VYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVA 80 (259)
T ss_dssp TTCCTTCEEEEESCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHH
Confidence 36899999999999999999999999999998 9999999999888777777778899999999999999999999999
Q ss_pred HHcC-CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 103 EKYG-SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 103 ~~~~-~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
++++ ++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||..
T Consensus 81 ~~~~~~idilvnnAG~~~-------~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G------~Ii~isS~~ 147 (259)
T d2ae2a_ 81 NHFHGKLNILVNNAGIVI-------YKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERG------NVVFISSVS 147 (259)
T ss_dssp HHTTTCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSE------EEEEECCGG
T ss_pred HHhCCCceEEEECCceec-------cCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccc------ccccccccc
Confidence 9986 7999999999875 6678889999999999999999999999999999988775 999999999
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------ccCCCCCCCC
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------QRNVPEGKLF 248 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------~~~~~~~~~~ 248 (282)
+..+ .++...|+++|+++.+|+|+++.|++++ +||||+|+||+++|++.+.. ....|..+..
T Consensus 148 ~~~~---~~~~~~Y~asKaal~~lt~~lA~el~~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~R~g 222 (259)
T d2ae2a_ 148 GALA---VPYEAVYGATKGAMDQLTRCLAFEWAKD--NIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMG 222 (259)
T ss_dssp GTSC---CTTCHHHHHHHHHHHHHHHHHHHHTGGG--TEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTCSCB
T ss_pred cccc---cccccchHHHHHHHHHHHHHHHHHhCcC--ceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCCCCc
Confidence 8877 6788999999999999999999999999 99999999999999975432 2346677888
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+|+|+.+.+++++..+++||+.+.+|||+.
T Consensus 223 ~pedvA~~v~fL~S~~s~~itG~~i~VDGG~~ 254 (259)
T d2ae2a_ 223 EPKELAAMVAFLCFPAASYVTGQIIYVDGGLM 254 (259)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CHHHHHHHHHHHhCchhCCCcCcEEEECCCeE
Confidence 99999999999999999999999999999975
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=100.00 E-value=1.1e-49 Score=337.15 Aligned_cols=237 Identities=19% Similarity=0.261 Sum_probs=212.2
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc--cCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN--RFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~--~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++||++|||||++|||+++|++|+++|++ |++++|+.+++++..+.+. ..+.++.+++||++|+++++++++++.
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~--V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~ 78 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAK--LSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT 78 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHH
Confidence 378999999999999999999999999998 9999999988876554432 234589999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++||+||+||||||+.. +..++.+.+.++|++.+++|+.+++++++++.|.|++++.| +||++||..+
T Consensus 79 ~~~G~iDiLVnnAG~~~------~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G------~Ii~isS~~~ 146 (258)
T d1iy8a_ 79 ERFGRIDGFFNNAGIEG------KQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSG------MVVNTASVGG 146 (258)
T ss_dssp HHHSCCSEEEECCCCCC------CCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC------EEEEECCGGG
T ss_pred HHhCCCCEEEECCcccc------cCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCC------CCcccccHhh
Confidence 99999999999999864 35678888999999999999999999999999999988776 9999999999
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------------ccCCCCCC
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------------QRNVPEGK 246 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------------~~~~~~~~ 246 (282)
..+ .+....|+++|+++.+|+++|+.|++++ +||||+|+||+++|++.+.. ....|..+
T Consensus 147 ~~~---~~~~~~Y~asKaal~~lt~~lA~el~~~--gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R 221 (258)
T d1iy8a_ 147 IRG---IGNQSGYAAAKHGVVGLTRNSAVEYGRY--GIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKR 221 (258)
T ss_dssp TSB---CSSBHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTCS
T ss_pred ccC---CCCchHHHHHHHHHHHHHHHHHHHhCcc--CceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCCCC
Confidence 877 6788999999999999999999999999 89999999999999975422 23356677
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 247 LFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
..+|+|+|+.+.+++++..+++||+.+.+|||+-
T Consensus 222 ~~~p~dvA~~v~fL~S~~s~~itG~~i~VDGG~s 255 (258)
T d1iy8a_ 222 YGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQS 255 (258)
T ss_dssp CBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred CcCHHHHHHHHHHHhCchhcCCcCceEEcCcchh
Confidence 8899999999999999999999999999999973
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=2e-49 Score=335.26 Aligned_cols=233 Identities=21% Similarity=0.292 Sum_probs=213.0
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|++|||||++|||+++|++|+++|++ |++++|++++++++.+++++.+.++.+++||++|+++++++++++.++||+|
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~--V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFA--VAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 79 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence 78999999999999999999999998 9999999999888887777778899999999999999999999999999999
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|+||||||+.. ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.+ +.|+++||..+..+
T Consensus 80 DilVnnAG~~~-------~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~-----g~Iv~isS~~~~~~--- 144 (255)
T d1gega_ 80 DVIVNNAGVAP-------STPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHG-----GKIINACSQAGHVG--- 144 (255)
T ss_dssp CEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC-----EEEEEECCGGGTSC---
T ss_pred cEEEecccccc-------cCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccc-----cccccccchhhccc---
Confidence 99999999875 6788899999999999999999999999999987766543 48999999998877
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-------------------cccCCCCCCCCC
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-------------------FQRNVPEGKLFT 249 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~-------------------~~~~~~~~~~~~ 249 (282)
.+....|+++|+|+.+|+++|+.|++++ |||||+|+||+++|++.+. +.+..|..+..+
T Consensus 145 ~~~~~~Y~asKaal~~ltk~lA~el~~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~ 222 (255)
T d1gega_ 145 NPELAVYSSSKFAVRGLTQTAARDLAPL--GITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSE 222 (255)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCSCBC
T ss_pred CcccccchhCHHHHHhhHHHHHHHhhhh--CcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCCCCCCcC
Confidence 7788999999999999999999999999 8999999999999997542 223456778889
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+|+|+.+.+++++..+++||+.+.+|||++
T Consensus 223 peevA~~v~fL~S~~a~~itG~~i~vDGG~~ 253 (255)
T d1gega_ 223 PEDVAACVSYLASPDSDYMTGQSLLIDGGMV 253 (255)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred HHHHHHHHHHHhCchhCCccCcEEEecCCEE
Confidence 9999999999999999999999999999986
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=1.1e-49 Score=337.36 Aligned_cols=236 Identities=23% Similarity=0.290 Sum_probs=214.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.||++|||||++|||+++|++|+++|++ |++++|++++++++.+.+++.+.++.++++|++|+++++++++++.++||
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga~--V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGLR--VFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4899999999999999999999999998 99999999988887777777788999999999999999999999999999
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhh--hcCCCCCccceeEEEEeecccccc
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLL--KVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l--~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
+||+||||||+.. ..++.+.+.++|++.+++|+.+++++++++.|++ .+++. ++||+++|..+..
T Consensus 79 ~iDilVnnAG~~~-------~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~------g~Ii~i~S~~~~~ 145 (257)
T d2rhca1 79 PVDVLVNNAGRPG-------GGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGT------GRIVNIASTGGKQ 145 (257)
T ss_dssp SCSEEEECCCCCC-------CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTE------EEEEEECCGGGTS
T ss_pred CCCEEEecccccC-------CCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCC------ccccccccccccc
Confidence 9999999999875 6678889999999999999999999999999974 44444 3999999999887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-------------------cccCCCCC
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-------------------FQRNVPEG 245 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~-------------------~~~~~~~~ 245 (282)
+ .++...|+++|+|+.+|+|+|+.|++++ +||||+|+||+++|++.+. +....|..
T Consensus 146 ~---~~~~~~Y~asKaal~~ltk~lA~el~~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Plg 220 (257)
T d2rhca1 146 G---VVHAAPYSASKHGVVGFTKALGLELART--GITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIG 220 (257)
T ss_dssp C---CTTCHHHHHHHHHHHHHHHHHHHHTTTS--EEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTTS
T ss_pred c---cccchhHHHHHHHHHHHHHHHHHHhhhh--CcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCCC
Confidence 7 6788999999999999999999999999 8999999999999997542 23346677
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
+..+|+|+|+.+.+++++..+++||+.+.+|||.-.|
T Consensus 221 R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~~~~ 257 (257)
T d2rhca1 221 RYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGGLGNY 257 (257)
T ss_dssp SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTCCCC
T ss_pred CCcCHHHHHHHHHHHhCchhcCCcCceEEECcCcccC
Confidence 8889999999999999999999999999999998776
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=8.3e-50 Score=337.99 Aligned_cols=238 Identities=19% Similarity=0.237 Sum_probs=195.1
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
+.++|+||++|||||++|||+++|++|+++|++ |++++|++++++++.+.+.+.+.++.++.||++++++++++++++
T Consensus 2 ~~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~--V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d1xq1a_ 2 QRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAV--IHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTV 79 (259)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHH
Confidence 356899999999999999999999999999997 999999999988877777666779999999999999999999999
Q ss_pred HHHc-CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 102 KEKY-GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 102 ~~~~-~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
.++| |++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||.
T Consensus 80 ~~~~~g~idilvnnAG~~~-------~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G------~Iv~isS~ 146 (259)
T d1xq1a_ 80 SSMFGGKLDILINNLGAIR-------SKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCG------NIIFMSSI 146 (259)
T ss_dssp HHHHTTCCSEEEEECCC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC------EEEEEC--
T ss_pred HHHhCCCcccccccccccC-------CCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccc------cccccccc
Confidence 9998 78999999999875 6677888999999999999999999999999999988776 99999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc---------cCCCCCCCCChH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ---------RNVPEGKLFTKE 251 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~---------~~~~~~~~~~~~ 251 (282)
.+..+ .++...|+++|+|+.+|+++++.|++++ +||||+|+||+++|++.+... ...|..+..+|+
T Consensus 147 ~~~~~---~~~~~~Y~asKaal~~lt~~lA~e~~~~--gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~pl~R~~~pe 221 (259)
T d1xq1a_ 147 AGVVS---ASVGSIYSATKGALNQLARNLACEWASD--GIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPE 221 (259)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEECCSCC-------------------------CCGG
T ss_pred ccccc---ccccccccccccchhhhhHHHHHHhccc--CeEEEEeccCcccCHHhhhhchHHHHHHHHhCCCCCCCcCHH
Confidence 98877 6677899999999999999999999999 899999999999999876432 124455677999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
|+|+.+.+++++..+++||+.+.+|||+
T Consensus 222 dvA~~v~fL~S~~s~~iTG~~i~vDGG~ 249 (259)
T d1xq1a_ 222 EVSSLVAFLCMPAASYITGQTICVDGGL 249 (259)
T ss_dssp GGHHHHHHHTSGGGTTCCSCEEECCCCE
T ss_pred HHHHHHHHHhCchhcCCcCcEEEeCCCE
Confidence 9999999999999999999999999996
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=100.00 E-value=2.3e-49 Score=333.90 Aligned_cols=233 Identities=24% Similarity=0.342 Sum_probs=209.2
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+|+||++|||||++|||+++|++|+++|++ |++++|+++++++..++ .+.++.+++||++|+++++++++++.++
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~--V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGAR--VVLADVLDEEGAATARE---LGDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHT---TGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHH---hCCceEEEEcccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999999998 99999998876654443 3568999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
||+||+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||..+..
T Consensus 77 ~g~iDilVnnAg~~~-------~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G------~II~isS~~~~~ 143 (254)
T d1hdca_ 77 FGSVDGLVNNAGIST-------GMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGG------SIVNISSAAGLM 143 (254)
T ss_dssp HSCCCEEEECCCCCC-------CSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGGTS
T ss_pred cCCccEEEecCcccc-------ccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCC------eecccccchhcc
Confidence 999999999999975 6778889999999999999999999999999999988765 999999999887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------ccCCCCCCCC-ChHHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--------QRNVPEGKLF-TKEFSVQ 255 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--------~~~~~~~~~~-~~~~~a~ 255 (282)
+ .++...|++||+|+.+|+++|+.|++++ +||||+|+||+++|++.... .+..|..+.. .|+|+|+
T Consensus 144 ~---~~~~~~Y~asKaal~~lt~~lA~e~a~~--gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~g~~PedvA~ 218 (254)
T d1hdca_ 144 G---LALTSSYGASKWGVRGLSKLAAVELGTD--RIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEPGEIAG 218 (254)
T ss_dssp C---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCHHHHHHTCCCSTTSCTTSTTSSCB-CHHHHHH
T ss_pred c---ccchhhHHHHHHHHHHHHHHHHHHhCCC--ceEEEEeeeCcccCccchhcCHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 7 6788999999999999999999999999 99999999999999976532 2233444453 6999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCccc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+.+++++..+++||+.+.+|||+-
T Consensus 219 ~v~fL~S~~a~~itG~~i~vDGG~t 243 (254)
T d1hdca_ 219 AVVKLLSDTSSYVTGAELAVDGGWT 243 (254)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHhchhhCCCCCceEEeCCCcc
Confidence 9999999999999999999999973
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=1.7e-49 Score=336.68 Aligned_cols=235 Identities=18% Similarity=0.216 Sum_probs=206.3
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC-Cccccccccc-ccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP-NGATGLLDLK-NRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~-~~~~~~~~~~-~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+||++|||||++|||+++|++|+++|++ |++++|+. +.++++.+.+ ...+.++.+++||++|+++++++++++.+
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~--V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGAD--IVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999998 99999975 4455544433 44467899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+||+||+||||||+.. ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||..+.
T Consensus 80 ~~G~iDiLVnnAG~~~-------~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G------~Iv~isS~~~~ 146 (260)
T d1x1ta1 80 QMGRIDILVNNAGIQH-------TALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFG------RIINIASAHGL 146 (260)
T ss_dssp HHSCCSEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGGT
T ss_pred HhCCCcEEEeeccccc-------CCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCc------eEeecccccce
Confidence 9999999999999875 6678889999999999999999999999999999998775 99999999998
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------------------cCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------------------RNVP 243 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------------------~~~~ 243 (282)
.+ .++...|+++|+++.+|+++++.|++++ |||||+|+||+++|++.+... ...|
T Consensus 147 ~~---~~~~~~Y~asKaal~~lt~~lA~el~~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 221 (260)
T d1x1ta1 147 VA---SANKSAYVAAKHGVVGFTKVTALETAGQ--GITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQP 221 (260)
T ss_dssp SC---CTTCHHHHHHHHHHHHHHHHHHHHHTTT--TEEEEEEEECCBCC------------------------CHHHHCT
T ss_pred ec---cCCcchhhhhhhhHHHhHHHHHHHhchh--CcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHhcCC
Confidence 77 6788899999999999999999999998 999999999999999865432 1234
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 244 EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
..+..+|+|+|+.+.+++++..+++||+.+.+|||+.
T Consensus 222 l~R~g~pediA~~v~fL~S~~a~~itG~~i~vDGG~t 258 (260)
T d1x1ta1 222 SLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGWT 258 (260)
T ss_dssp TCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHhChhhCCCcCCEEEECcchh
Confidence 5677899999999999999999999999999999973
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.5e-49 Score=328.26 Aligned_cols=231 Identities=20% Similarity=0.264 Sum_probs=206.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|.++||++|||||++|||+++|++|+++|++ |++++|+++++++..+.. ++++++||++|+++++++++++.+
T Consensus 1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~--V~~~~r~~~~l~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~ 73 (242)
T d1ulsa_ 1 MRLKDKAVLITGAAHGIGRATLELFAKEGAR--LVACDIEEGPLREAAEAV-----GAHPVVMDVADPASVERGFAEALA 73 (242)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHTT-----TCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHc-----CCeEEEEecCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999998 999999988776654433 467899999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++|+||+||||||+.. ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.+ .++++||. +.
T Consensus 74 ~~g~iDilVnnAG~~~-------~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~------~i~~~ss~-~~ 139 (242)
T d1ulsa_ 74 HLGRLDGVVHYAGITR-------DNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPG------SIVLTASR-VY 139 (242)
T ss_dssp HHSSCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCE------EEEEECCG-GG
T ss_pred hcCCceEEEECCcccc-------cCchhhCcchhhhccccccchhhhhhhhhccccccccccc------eeeeeccc-cc
Confidence 9999999999999875 6778889999999999999999999999999999988764 67777764 34
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEFSVQ 255 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~a~ 255 (282)
.+ .++...|+++|+|+.+|+++++.|++++ |||||+|+||+++|++.+... ...|..+..+|+|+|+
T Consensus 140 ~~---~~~~~~Y~asKaal~~ltk~lA~ela~~--gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~~~pedia~ 214 (242)
T d1ulsa_ 140 LG---NLGQANYAASMAGVVGLTRTLALELGRW--GIRVNTLAPGFIETRMTAKVPEKVREKAIAATPLGRAGKPLEVAY 214 (242)
T ss_dssp GC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCTTCSCBCHHHHHH
T ss_pred cC---CCCCcchHHHHHHHHHHHHHHHHHHhhh--CcEEEEEeeCcccChhhhcCCHHHHHHHHhcCCCCCCCCHHHHHH
Confidence 44 6678899999999999999999999999 899999999999999976432 3466778889999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCccc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+.+++++..+++||+.+.+|||+.
T Consensus 215 ~v~fL~S~~s~~itG~~i~vDGG~t 239 (242)
T d1ulsa_ 215 AALFLLSDESSFITGQVLFVDGGRT 239 (242)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHhchhhCCCCCcEEEECCCcc
Confidence 9999999999999999999999974
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=100.00 E-value=6.9e-49 Score=330.98 Aligned_cols=236 Identities=22% Similarity=0.325 Sum_probs=212.3
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.|+||++|||||++|||+++|++|+++|++ |++++|+.+.++++.+.+.. +.++.+++||++|+++++++++++.++
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~--V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK--VMITGRHSDVGEKAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHhCC-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 489999999999999999999999999998 99999999888776666543 568999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
||+||+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| ++||++||..+..
T Consensus 80 ~G~iDiLVnnAg~~~-------~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~g-----g~Ii~isS~~~~~ 147 (251)
T d1zk4a1 80 FGPVSTLVNNAGIAV-------NKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLG-----ASIINMSSIEGFV 147 (251)
T ss_dssp HSSCCEEEECCCCCC-------CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSC-----EEEEEECCGGGTS
T ss_pred hCCceEEEecccccc-------ccchhcccccchhhhccccccccchhHHHHHHHHHhcCCC-----CceEeeeccceec
Confidence 999999999999985 6678889999999999999999999999999999988765 5899999999887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHh--ccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCChHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEF--GRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFTKEFS 253 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~--~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~~~~~ 253 (282)
+ .+....|+++|+++.+|+++++.|+ +++ +||||+|+||+++|++.+.. ....|..+..+|+|+
T Consensus 148 ~---~~~~~~Y~asKaal~~lt~~lA~e~~l~~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~pl~R~~~pedv 222 (251)
T d1zk4a1 148 G---DPSLGAYNASKGAVRIMSKSAALDCALKDY--DVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPNDI 222 (251)
T ss_dssp C---CTTCHHHHHHHHHHHHHHHHHHHHHHHTTC--SEEEEEEEECCBCCHHHHTSTTHHHHHTSTTTCTTSSCBCHHHH
T ss_pred c---CCCchhHHHHHHHHhcchHHHHHHHhcCCC--cEEEEEEeCCCCCChhHHhcCCHHHHHHHHhCCCCCCCcCHHHH
Confidence 7 6778899999999999999999994 466 99999999999999986532 223556778899999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+.+.+++++..+++||+.+.+|||+.
T Consensus 223 A~~v~fL~S~~s~~itG~~i~vDGG~t 249 (251)
T d1zk4a1 223 AYICVYLASNESKFATGSEFVVDGGYT 249 (251)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHhCchhCCCcCcEEEECcccc
Confidence 999999999999999999999999973
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=100.00 E-value=1.6e-49 Score=336.61 Aligned_cols=235 Identities=19% Similarity=0.237 Sum_probs=214.8
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.|+||++|||||++|||+++|++|+++|++ |++++|+++.++++.+.++..+.++.+++||++|+++++++++++.++
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~--V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTA--IALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRD 79 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999999999998 999999999888887777777889999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
||++|+||||||... +..++.+.+.++|++.+++|+.+++++++++.|.|.+++.| +||++||..+..
T Consensus 80 ~g~iDilVnnaG~~~------~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G------~II~isS~~~~~ 147 (260)
T d1zema1 80 FGKIDFLFNNAGYQG------AFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYG------RIVNTASMAGVK 147 (260)
T ss_dssp HSCCCEEEECCCCCC------CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCHHHHS
T ss_pred hCCCCeehhhhcccc------ccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCC------CCCeeechhhcc
Confidence 999999999999874 24678899999999999999999999999999999887765 999999999887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc------------------------ccc
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------------------------FQR 240 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~------------------------~~~ 240 (282)
+ .++...|+++|+++.+|+|+++.|++++ |||||+|+||+++|++... +..
T Consensus 148 ~---~~~~~~Y~asKaal~~ltk~lA~el~~~--gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (260)
T d1zema1 148 G---PPNMAAYGTSKGAIIALTETAALDLAPY--NIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIG 222 (260)
T ss_dssp C---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHH
T ss_pred C---CcchHHHHHHHHHHHHHHHHHHHHhhhh--CCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHh
Confidence 7 6788999999999999999999999999 9999999999999986421 123
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCc
Q 023441 241 NVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQ 278 (282)
Q Consensus 241 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~ 278 (282)
..|..++.+|+|+|..+.+++++...++||+.+.+|||
T Consensus 223 ~~Pl~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG 260 (260)
T d1zema1 223 SVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 260 (260)
T ss_dssp TSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESCC
T ss_pred cCCCCCCcCHHHHHHHHHHHhCchhcCccCCeEEeCCC
Confidence 45677788999999999999999999999999999997
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=100.00 E-value=3.7e-49 Score=333.70 Aligned_cols=235 Identities=20% Similarity=0.330 Sum_probs=209.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|.|+||++|||||++|||+++|++|+++|++ |++++|+.++++++.+.+ +.++.+++||++|+++++++++++.+
T Consensus 1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~--V~~~~r~~~~l~~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~~~~ 75 (256)
T d1k2wa_ 1 MRLDGKTALITGSARGIGRAFAEAYVREGAR--VAIADINLEAARATAAEI---GPAACAIALDVTDQASIDRCVAELLD 75 (256)
T ss_dssp CTTTTEEEEEETCSSHHHHHHHHHHHHTTEE--EEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHh---CCceEEEEeeCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999988 999999988776655444 56899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++|+||+||||||... ..+..+.+.++|++.+++|+.+++++++.+.|.|.+++.+ ++||++||..+.
T Consensus 76 ~~g~iDilVnnAg~~~-------~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~-----g~Iv~isS~~~~ 143 (256)
T d1k2wa_ 76 RWGSIDILVNNAALFD-------LAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRG-----GKIINMASQAGR 143 (256)
T ss_dssp HHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC-----EEEEEECCGGGT
T ss_pred HhCCccEEEeeccccc-------ccccccCCHHHHHhhhceeeeccccchhhccchhHHhccC-----Cccccccchhhc
Confidence 9999999999999875 6678889999999999999999999999999976554322 499999999988
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------------ccCCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-------------------QRNVPE 244 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------------~~~~~~ 244 (282)
.+ .+....|+++|+|+.+|+++++.|++++ |||||+|+||+++|++.+.. ....|.
T Consensus 144 ~~---~~~~~~Y~asKaal~~lt~~lA~el~~~--gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl 218 (256)
T d1k2wa_ 144 RG---EALVGVYCATKAAVISLTQSAGLNLIRH--GINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPF 218 (256)
T ss_dssp SC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTT
T ss_pred cc---cccccchhhhhhHHHHHHHHHHHHhccc--CeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcCCC
Confidence 77 6788999999999999999999999999 89999999999999985422 123466
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 245 GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+..+|+|+|+.+.+++++...++||+.+.+|||.+
T Consensus 219 gR~~~p~evA~~v~fL~S~~a~~iTG~~i~vDGG~~ 254 (256)
T d1k2wa_ 219 GRMGRAEDLTGMAIFLATPEADYIVAQTYNVDGGNW 254 (256)
T ss_dssp SSCBCHHHHHHHHHHTTSGGGTTCCSCEEEESTTSS
T ss_pred CCCcCHHHHHHHHHHHhCchhCCccCceEEECcchh
Confidence 778899999999999999999999999999999964
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1e-48 Score=326.99 Aligned_cols=226 Identities=22% Similarity=0.337 Sum_probs=199.8
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..+++||++|||||++|||+++|++|+++|++ |++++|+.+..+ ++..+++|++|+++++++++++.
T Consensus 2 ~psl~gK~~lITGas~GIG~aia~~la~~Ga~--V~~~~r~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~~~ 68 (237)
T d1uzma1 2 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHK--VAVTHRGSGAPK-----------GLFGVEVDVTDSDAVDRAFTAVE 68 (237)
T ss_dssp CCCCCCCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESSSCCCT-----------TSEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCcchhc-----------CceEEEEecCCHHHHHHHHHHHH
Confidence 35799999999999999999999999999998 999999876643 56789999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+++|+||+||||||+.. ..++.+.+.++|++.+++|+.+++.+++.+.|.|.+++.| +||++||..+
T Consensus 69 ~~~g~iDiLVnnAG~~~-------~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g------~Iv~isS~~~ 135 (237)
T d1uzma1 69 EHQGPVEVLVSNAGLSA-------DAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFG------RMIFIGSVSG 135 (237)
T ss_dssp HHHSSCSEEEEECSCCC------------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE------EEEEECCCCC
T ss_pred HhcCCceEEEeeecccc-------cccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCC------ceEEEcchhh
Confidence 99999999999999875 5678888999999999999999999999999999998875 9999999999
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--------cccCCCCCCCCChHHHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--------FQRNVPEGKLFTKEFSV 254 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--------~~~~~~~~~~~~~~~~a 254 (282)
..+ .++...|++||+|+.+|+++++.|++++ |||||+|+||+++|++.+. .....|..+..+|||+|
T Consensus 136 ~~~---~~~~~~Y~asKaal~~lt~~lA~e~~~~--gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~~~pedvA 210 (237)
T d1uzma1 136 LWG---IGNQANYAASKAGVIGMARSIARELSKA--NVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPAEVA 210 (237)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCHHHHHSCHHHHHHHGGGCTTCSCBCHHHHH
T ss_pred ccC---CcccHHHHHHHHHHHHHHHHHHhhhhcC--CceeeeeeeCcCCChhhhccCHHHHHHHHhcCCCCCCcCHHHHH
Confidence 877 6778999999999999999999999999 9999999999999998653 23456778889999999
Q ss_pred HHHHHHHhhcCCCCCCceeecCCcc
Q 023441 255 QKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+.+.+++++..+++||+.+.+|||.
T Consensus 211 ~~v~fL~S~~s~~itG~~i~vdGG~ 235 (237)
T d1uzma1 211 GVVSFLASEDASYISGAVIPVDGGM 235 (237)
T ss_dssp HHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHhCchhcCCcCCeEEECCCC
Confidence 9999999998999999999999985
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.4e-48 Score=328.33 Aligned_cols=229 Identities=21% Similarity=0.249 Sum_probs=204.4
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++||++|||||++|||+++|++|+++|++ |++++|+++..+. .+.. ...+++||++|+++++++++++.++|
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~--V~~~~~~~~~~~~-~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGAL--VALCDLRPEGKEV-AEAI-----GGAFFQVDLEDERERVRFVEEAAYAL 74 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSTTHHHH-HHHH-----TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHH-HHHc-----CCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999988 9999999765432 2221 35678999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
|+||+||||||... ..++.+.+.++|++.+++|+.+++++++++.|.|++++.| +||++||..+..+
T Consensus 75 G~iDiLVnnAG~~~-------~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G------~Ii~isS~~~~~~ 141 (248)
T d2d1ya1 75 GRVDVLVNNAAIAA-------PGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGG------AIVNVASVQGLFA 141 (248)
T ss_dssp SCCCEEEECCCCCC-------CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCE------EEEEECCGGGTSB
T ss_pred CCCCeEEEeCcCCC-------CCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccc------ccccccccccccc
Confidence 99999999999875 5678888999999999999999999999999999998765 9999999999877
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--------------cccCCCCCCCCChH
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--------------FQRNVPEGKLFTKE 251 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--------------~~~~~~~~~~~~~~ 251 (282)
.+....|+++|+++.+|+++++.|++++ +||||+|+||+++|++... +....|..+..+|+
T Consensus 142 ---~~~~~~Y~asKaal~~ltk~lA~el~~~--gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~pe 216 (248)
T d2d1ya1 142 ---EQENAAYNASKGGLVNLTRSLALDLAPL--RIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPE 216 (248)
T ss_dssp ---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCHHHHHHHC--------CHHHHTTSTTSSCBCHH
T ss_pred ---ccccchhHHHHHHHHHHHHHHHHHhhhh--CcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcCCCCCCcCHH
Confidence 6788999999999999999999999999 9999999999999986432 12234556778999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+|+.+.+++++..+++||+.+.+|||+.
T Consensus 217 dia~~v~fL~S~~s~~itG~~i~vDGG~t 245 (248)
T d2d1ya1 217 EVAEAVLFLASEKASFITGAILPVDGGMT 245 (248)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHhCchhcCCCCcEEEcCcCcc
Confidence 99999999999989999999999999973
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=100.00 E-value=2.5e-48 Score=329.48 Aligned_cols=244 Identities=20% Similarity=0.318 Sum_probs=214.6
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccc-ccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD-LKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~-~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.|+++||++|||||++|||+++|++|+++|++ |++++|+.+++++..+ +.++.+.++.+++||++|+++++++++++
T Consensus 4 ~m~l~gK~alITGas~GIG~aia~~la~~Ga~--V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 81 (260)
T d1h5qa_ 4 TISFVNKTIIVTGGNRGIGLAFTRAVAAAGAN--VAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQI 81 (260)
T ss_dssp EECCTTEEEEEETTTSHHHHHHHHHHHHTTEE--EEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999999999999988 9999999998876543 44556779999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+++|++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.+ +.|++.+|..
T Consensus 82 ~~~~g~iDilVnnAg~~~-------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~-----g~i~~~~s~~ 149 (260)
T d1h5qa_ 82 DADLGPISGLIANAGVSV-------VKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQK-----GSIVVTSSMS 149 (260)
T ss_dssp HHHSCSEEEEEECCCCCC-------CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-----EEEEEECCGG
T ss_pred HHHhCCCcEecccccccc-------cCCHHHhccccccccccccccchhhhhhhhcccccccccc-----eEEEEeeccc
Confidence 999999999999999875 6778889999999999999999999999999998655433 4888888876
Q ss_pred cccCC----CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------ccCCCCCCCCC
Q 023441 182 GSIGD----NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--------QRNVPEGKLFT 249 (282)
Q Consensus 182 ~~~~~----~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--------~~~~~~~~~~~ 249 (282)
..... .+.++...|+++|+++.+|+|+++.|++++ +||||+|+||+++|++.+.. ....|..+..+
T Consensus 150 ~~~~~~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~--gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R~g~ 227 (260)
T d1h5qa_ 150 SQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWASA--GIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLNRFAQ 227 (260)
T ss_dssp GTSCCEEETTEECSCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTTSSCBC
T ss_pred cccccccccccCccccchhhhhhhHHHHHHHHHHHhchh--CeEEeecCCCcccCcchhccCHHHHHHHHhcCCCCCCcC
Confidence 55432 123567889999999999999999999999 89999999999999987643 23466778889
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 250 KEFSVQKLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
|+|+|+.+.+++++...++||+.+.+|||+.-|
T Consensus 228 pedvA~~v~fL~S~~s~~itG~~i~VDGG~~~~ 260 (260)
T d1h5qa_ 228 PEEMTGQAILLLSDHATYMTGGEYFIDGGQLIW 260 (260)
T ss_dssp GGGGHHHHHHHHSGGGTTCCSCEEEECTTGGGC
T ss_pred HHHHHHHHHHHhcchhCCCcCceEEECCCeecC
Confidence 999999999999999999999999999999988
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-48 Score=327.06 Aligned_cols=231 Identities=21% Similarity=0.304 Sum_probs=205.5
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.++||++|||||++|||+++|+.|+++|++ |++++|+++.++++.++. .++.+++||++|+++++++++++.++
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga~--V~i~~r~~~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~~~~~~~~ 76 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGAR--VVICDKDESGGRALEQEL----PGAVFILCDVTQEDDVKTLVSETIRR 76 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHC----TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHhc----CCCeEEEccCCCHHHHHHHHHHHHHh
Confidence 578999999999999999999999999998 999999988777655543 36889999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
||+||+||||||... ...++.+.+.++|++.+++|+.+++++++.+.|.|++++ | +||++||..+..
T Consensus 77 ~g~iDilVnnAG~~~------~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G------~Ii~isS~~~~~ 143 (250)
T d1ydea1 77 FGRLDCVVNNAGHHP------PPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ-G------NVINISSLVGAI 143 (250)
T ss_dssp HSCCCEEEECCCCCC------CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C------EEEEECCHHHHH
T ss_pred cCCCCEEEecccccc------cccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC-C------CCcccccccccc
Confidence 999999999999764 245667888999999999999999999999999998654 4 999999999887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------------cCCCCCCCCCh
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------------RNVPEGKLFTK 250 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------------~~~~~~~~~~~ 250 (282)
+ .+....|+++|+++.+|+++|+.|++++ +||||+|+||+++|++.+.+. ...|..+..+|
T Consensus 144 ~---~~~~~~Y~asKaal~~lt~~lA~e~a~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~g~p 218 (250)
T d1ydea1 144 G---QAQAVPYVATKGAVTAMTKALALDESPY--GVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMGQP 218 (250)
T ss_dssp C---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTSSCBCH
T ss_pred c---ccCcchhHHHHhhHHHHHHHHHHHhccc--CeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCCCCCCCCH
Confidence 7 6788999999999999999999999999 899999999999999765321 13456778899
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+|+.+.+++++ .+++||+.+.+|||+.
T Consensus 219 ~eva~~v~fL~Sd-a~~itG~~i~vDGG~~ 247 (250)
T d1ydea1 219 AEVGAAAVFLASE-ANFCTGIELLVTGGAE 247 (250)
T ss_dssp HHHHHHHHHHHHH-CTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHHhCc-cCCCcCCeEEECCCcc
Confidence 9999999999987 7899999999999974
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=9.6e-49 Score=328.64 Aligned_cols=231 Identities=24% Similarity=0.332 Sum_probs=209.2
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEe-ecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIAT-CRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~-~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
+++|||||++|||+++|++|+++|++ |++. .|+++.++++.++++..+.++.++++|++|+++++++++++.+++|+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~--V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCK--VLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999998 7776 45666677777777777889999999999999999999999999999
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||..+..+
T Consensus 80 iDiLVnnAg~~~-------~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G------~IVnisS~~~~~~-- 144 (244)
T d1edoa_ 80 IDVVVNNAGITR-------DTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKG------RIINIASVVGLIG-- 144 (244)
T ss_dssp CSEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCTHHHHC--
T ss_pred CCcccccccccc-------ccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCc------EEEEEcChhhcCC--
Confidence 999999999885 6778899999999999999999999999999999988765 9999999999877
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------ccCCCCCCCCChHHHHHHHHH
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--------QRNVPEGKLFTKEFSVQKLLN 259 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--------~~~~~~~~~~~~~~~a~~~~~ 259 (282)
.++...|+++|+|+.+|+++|+.|++++ |||||+|+||+++|++.+.. ....|..+..+|+|+|+.+.+
T Consensus 145 -~~~~~~Y~asKaal~~ltk~lA~el~~~--gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R~~~p~dvA~~v~f 221 (244)
T d1edoa_ 145 -NIGQANYAAAKAGVIGFSKTAAREGASR--NINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRTGQPENVAGLVEF 221 (244)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHTT--TEEEEEEEECSBCSHHHHTTCHHHHHHHHTSCTTCSCBCHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHChHHHHHHHhhh--CcEEEEEecceeccHHHHHhhHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 6778999999999999999999999999 89999999999999986543 334677788999999999999
Q ss_pred HH-hhcCCCCCCceeecCCcc
Q 023441 260 II-NNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 260 ~~-~~~~~~~~g~~~~~d~~~ 279 (282)
++ ++...++||+.+.+|||.
T Consensus 222 La~S~~a~~itG~~i~vdGG~ 242 (244)
T d1edoa_ 222 LALSPAASYITGQAFTIDGGI 242 (244)
T ss_dssp HHHCSGGGGCCSCEEEESTTT
T ss_pred HHCCchhcCCcCCeEEeCCCe
Confidence 96 677899999999999985
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=3.5e-48 Score=326.85 Aligned_cols=234 Identities=21% Similarity=0.287 Sum_probs=207.8
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.|+||++|||||++|||+++|++|+++|++ |++++|++++++++.+.+ +.+..++++|++|+++++++++++.++
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~--V~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 77 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAK--VAFSDINEAAGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEECSCHHHHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHh---CCCeEEEEeecCCHHHHHHHHHHHHHH
Confidence 489999999999999999999999999998 999999988777655544 568899999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
+|++|+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|++++ ++||++||..+..
T Consensus 78 ~g~iDilVnnAG~~~-------~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-------G~Iv~isS~~~~~ 143 (253)
T d1hxha_ 78 LGTLNVLVNNAGILL-------PGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-------GSIINMASVSSWL 143 (253)
T ss_dssp HCSCCEEEECCCCCC-------CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-------EEEEEECCGGGTS
T ss_pred hCCCCeEEecccccC-------CCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-------Cceecccchhhhc
Confidence 999999999999875 56788889999999999999999999999999997643 3999999999987
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-------------CCCCCCCCChH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-------------NVPEGKLFTKE 251 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-------------~~~~~~~~~~~ 251 (282)
+ .+....|+++|+++.+|+++++.|+++++.+||||+|+||+++|++.+...+ ..+..+..+|+
T Consensus 144 ~---~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~pe 220 (253)
T d1hxha_ 144 P---IEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPE 220 (253)
T ss_dssp C---CTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBTTTBTTCCEECHH
T ss_pred C---ccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcchhhHHHHHhCccccccCCCCCHH
Confidence 7 6788999999999999999999999987557999999999999997543211 12234566899
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+|+.+.+++++..+++||+.+.+|||++
T Consensus 221 dvA~~v~fL~S~~s~~itG~~i~VDGG~~ 249 (253)
T d1hxha_ 221 RIAQLVLFLASDESSVMSGSELHADNSIL 249 (253)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESSSCT
T ss_pred HHHHHHHHHhChhhCCCcCcEEEECccHh
Confidence 99999999999999999999999999975
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=100.00 E-value=1.4e-47 Score=324.02 Aligned_cols=237 Identities=23% Similarity=0.280 Sum_probs=212.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+||+||++|||||++|||+++|++|+++|++ |++++|++++++++.+++++.+.+++++.||+++.++++++++++.+
T Consensus 2 f~L~gK~alITGas~GIG~aia~~la~~G~~--V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 2 WSLKGTTALVTGGSKGIGYAIVEELAGLGAR--VYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999998 99999999998888888888888999999999999999999999999
Q ss_pred Hc-CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 104 KY-GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 104 ~~-~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++ +++|+||||||... ..++.+.+.++|++.+++|+.+++.+.+++.|.|.+++.| +||++||..+
T Consensus 80 ~~~g~idilinnag~~~-------~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g------~ii~isS~~~ 146 (258)
T d1ae1a_ 80 VFDGKLNILVNNAGVVI-------HKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNG------NVIFLSSIAG 146 (258)
T ss_dssp HTTSCCCEEEECCCCCC-------CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSE------EEEEECCGGG
T ss_pred HhCCCcEEEeccccccc-------cCccccCCHHHHhhhhhhcccccccccccccccccccccc------cccccccccc
Confidence 99 68999999999985 6678888999999999999999999999999999988775 9999999999
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------------CCCCCCCC
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------------NVPEGKLF 248 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------------~~~~~~~~ 248 (282)
..+ .+....|+++|+++++|++.+++|++++ +||||+|+||+++|++.+.... ..|..++.
T Consensus 147 ~~~---~~~~~~Y~~sK~al~~lt~~lA~el~~~--gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plgR~~ 221 (258)
T d1ae1a_ 147 FSA---LPSVSLYSASKGAINQMTKSLACEWAKD--NIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAG 221 (258)
T ss_dssp TSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBC-------------CHHHHHHHHHHSTTCSCB
T ss_pred ccc---cccchhHHHHHHHHHHHHHHHHHhcCcC--cEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCCCCCCc
Confidence 877 7788999999999999999999999999 8999999999999998664322 24557788
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 249 TKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+|+|+.+.+++++...++||+.+.+|||+-
T Consensus 222 ~pediA~~v~fL~S~~s~~itG~~i~vDGG~s 253 (258)
T d1ae1a_ 222 KPQEVSALIAFLCFPAASYITGQIIWADGGFT 253 (258)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CHHHHHHHHHHHhChhhCCCcCcEEEeCCCee
Confidence 99999999999999989999999999999973
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=100.00 E-value=4.3e-47 Score=323.17 Aligned_cols=238 Identities=19% Similarity=0.253 Sum_probs=208.4
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.|+||++|||||++|||+++|++|+++|++ |++++|++++++++.+.+.. ..++.+++||++|+++++++++++.++
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~--V~i~~r~~~~~~~~~~~l~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAK--VVIADIADDHGQKVCNNIGS-PDVISFVHCDVTKDEDVRNLVDTTIAK 79 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHhcC-CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999998 99999999888877666654 346889999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
||++|+||||||.... ......+.+.++|++.+++|+.+++++++.+.|.|.+++.| +||++||..+..
T Consensus 80 ~g~iD~lVnnAG~~~~-----~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g------~ii~iss~~~~~ 148 (268)
T d2bgka1 80 HGKLDIMFGNVGVLST-----TPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKG------SIVFTASISSFT 148 (268)
T ss_dssp HSCCCEEEECCCCCCS-----SCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCE------EEEEECCGGGTC
T ss_pred cCCcceeccccccccC-----CCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCC------Cccccccccccc
Confidence 9999999999998741 12346678889999999999999999999999999988765 999999998876
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC-------------CCCCCCCChH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN-------------VPEGKLFTKE 251 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~-------------~~~~~~~~~~ 251 (282)
+. .+....|+++|+++.+|+++++.|++++ +||||+|+||+++|++....... .+..+..+|+
T Consensus 149 ~~--~~~~~~Y~asKaal~~lt~~lA~el~~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~pe 224 (268)
T d2bgka1 149 AG--EGVSHVYTATKHAVLGLTTSLCTELGEY--GIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAE 224 (268)
T ss_dssp CC--TTSCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSCSCCCCHH
T ss_pred cc--cccccccchhHHHHHhCHHHHHHHhChh--CeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccccCCCCcCHH
Confidence 53 2234589999999999999999999999 89999999999999987654221 2345678999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+|+.+.+++++...++||+.+.+|||+.
T Consensus 225 dvA~~v~fL~S~~s~~itGq~i~VDGG~t 253 (268)
T d2bgka1 225 DVADAVAYLAGDESKYVSGLNLVIDGGYT 253 (268)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHhChhhCCccCceEEECcCcc
Confidence 99999999999989999999999999974
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-47 Score=320.57 Aligned_cols=229 Identities=21% Similarity=0.293 Sum_probs=202.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+++||++|||||++|||+++|++|+++|++ |++++|++++++++.+.. ..+.+++||++|++++++++ +
T Consensus 1 mdl~GK~alITGas~GIG~aia~~la~~Ga~--V~~~~r~~~~l~~~~~~~----~~~~~~~~Dv~~~~~v~~~~----~ 70 (242)
T d1cyda_ 1 LNFSGLRALVTGAGKGIGRDTVKALHASGAK--VVAVTRTNSDLVSLAKEC----PGIEPVCVDLGDWDATEKAL----G 70 (242)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHS----TTCEEEECCTTCHHHHHHHH----T
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHhc----CCCeEEEEeCCCHHHHHHHH----H
Confidence 6899999999999999999999999999998 999999988776655443 35788999999999887665 5
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcC-CCCCccceeEEEEeecccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVG-GTGIERDVAVVANLSARVG 182 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~-~~g~~~~~~~iv~~ss~~~ 182 (282)
++|+||+||||||... ..++.+.+.++|++.+++|+.+++.+++.+.|.|.++ .. ++||++||..+
T Consensus 71 ~~g~iDilVnnAg~~~-------~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~------g~ii~isS~~~ 137 (242)
T d1cyda_ 71 GIGPVDLLVNNAALVI-------MQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVP------GSIVNVSSMVA 137 (242)
T ss_dssp TCCCCSEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC------EEEEEECCGGG
T ss_pred HcCCCeEEEECCcccc-------chhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhccc------Ccccccchhhc
Confidence 6799999999999875 6788899999999999999999999999999986544 44 39999999988
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~~~~ 252 (282)
..+ .++...|+++|+++.+|+|+++.|++++ |||||+|+||+++|++.+.. ....|..+..+|+|
T Consensus 138 ~~~---~~~~~~Y~asKaal~~lt~~lA~e~~~~--gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~pee 212 (242)
T d1cyda_ 138 HVT---FPNLITYSSTKGAMTMLTKAMAMELGPH--KIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVED 212 (242)
T ss_dssp TSC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTTSSCBCHHH
T ss_pred ccc---CCccccccchHHHHHHHHHHHHHHhCcc--CeecccCCCCCccCHHHHhhcCCHHHHHHHHhcCCCCCCcCHHH
Confidence 776 6788999999999999999999999999 89999999999999986532 22356678889999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+.+.+++++..+++||+.+.+|||+.
T Consensus 213 va~~v~fL~S~~s~~itG~~i~vDGG~~ 240 (242)
T d1cyda_ 213 VVNSILFLLSDRSASTSGGGILVDAGYL 240 (242)
T ss_dssp HHHHHHHHHSGGGTTCCSSEEEESTTGG
T ss_pred HHHHHHHHhCchhcCcCCceEEeCcchh
Confidence 9999999999999999999999999985
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.1e-47 Score=318.18 Aligned_cols=229 Identities=23% Similarity=0.312 Sum_probs=202.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+.|+||++|||||++|||+++|++|+++|++ |++++|++++++++.+.. ..+.++++|++|++++++++ +
T Consensus 3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~--V~~~~r~~~~l~~~~~~~----~~~~~~~~Dv~d~~~v~~~~----~ 72 (244)
T d1pr9a_ 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGAR--VVAVSRTQADLDSLVREC----PGIEPVCVDLGDWEATERAL----G 72 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHS----TTCEEEECCTTCHHHHHHHH----T
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE--EEEEECCHHHHHHHHHhc----CCCeEEEEeCCCHHHHHHHH----H
Confidence 5689999999999999999999999999998 999999988877655544 35788999999999887765 4
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhh-cCCCCCccceeEEEEeecccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLK-VGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~-~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++|+||+||||||... ..++.+.+.++|++.+++|+.+++.+++.+.|.+. +++.| +||++||..+
T Consensus 73 ~~g~iDilVnnAg~~~-------~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g------~Ii~isS~~~ 139 (244)
T d1pr9a_ 73 SVGPVDLLVNNAAVAL-------LQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPG------AIVNVSSQCS 139 (244)
T ss_dssp TCCCCCEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE------EEEEECCGGG
T ss_pred HhCCceEEEecccccc-------ccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcc------eEeecccccc
Confidence 6799999999999975 67888999999999999999999999999999754 44443 9999999998
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------ccCCCCCCCCChHH
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF----------QRNVPEGKLFTKEF 252 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~----------~~~~~~~~~~~~~~ 252 (282)
..+ .+....|++||+++.+|+|+++.|++++ +||||+|+||+++|++.+.. ....|..+..+|+|
T Consensus 140 ~~~---~~~~~~Y~asKaal~~lt~~lA~el~~~--gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~R~~~pee 214 (244)
T d1pr9a_ 140 QRA---VTNHSVYCSTKGALDMLTKVMALELGPH--KIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEH 214 (244)
T ss_dssp TSC---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCTTCSCBCHHH
T ss_pred ccc---ccchhhhhhhHHHHHHHHHHHHHHhCCC--cEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCCCCCCcCHHH
Confidence 877 6778899999999999999999999999 99999999999999986532 23456778889999
Q ss_pred HHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 253 SVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+.+.+++++..+++||+.+.+|||++
T Consensus 215 vA~~v~fL~S~~a~~itG~~i~vDGG~~ 242 (244)
T d1pr9a_ 215 VVNAILFLLSDRSGMTTGSTLPVEGGFW 242 (244)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHhCchhCCcCCcEEEECccHh
Confidence 9999999999999999999999999986
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=100.00 E-value=1e-46 Score=315.41 Aligned_cols=233 Identities=14% Similarity=0.184 Sum_probs=208.4
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCC-----cEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDK-----GCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~-----~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
+++|||||++|||+++|++|+++|++ ..|++.+|+.++++++.+++.+.+.++.+++||++|+++++++++++.+
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE 81 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999986 2488999999998888777777788999999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+||++|+||||||... ..++.+.+.++|++.+++|+.|++.+++.+.|.|++++.| +||++||..+.
T Consensus 82 ~~g~iDilvnnAg~~~-------~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G------~Ii~isS~~~~ 148 (240)
T d2bd0a1 82 RYGHIDCLVNNAGVGR-------FGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSG------HIFFITSVAAT 148 (240)
T ss_dssp HTSCCSEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGGT
T ss_pred HcCCcceeeccccccc-------CCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCC------ceEEEechhhc
Confidence 9999999999999985 6788899999999999999999999999999999988765 99999999998
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhh
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
.+ .++...|+++|+|+.+|+++|+.|++++ |||||+|+||+++|+|.+...... .....+|+++|+.++++++.
T Consensus 149 ~~---~~~~~~Y~asK~al~~lt~~la~el~~~--gIrvn~i~PG~v~T~~~~~~~~~~-~~~~~~PedvA~~v~~l~s~ 222 (240)
T d2bd0a1 149 KA---FRHSSIYCMSKFGQRGLVETMRLYARKC--NVRITDVQPGAVYTPMWGKVDDEM-QALMMMPEDIAAPVVQAYLQ 222 (240)
T ss_dssp SC---CTTCHHHHHHHHHHHHHHHHHHHHHTTT--TEEEEEEEECCBCSTTTCCCCSTT-GGGSBCHHHHHHHHHHHHTS
T ss_pred CC---CCCChHHHHHHHHHHHHHHHHHHHhCcC--CeEEEEeeeCcccCchhhhcCHhh-HhcCCCHHHHHHHHHHHHcC
Confidence 77 6788999999999999999999999998 899999999999999988765443 34567999999999999998
Q ss_pred cCCCCCCc-eeecCCccc
Q 023441 264 IKSHDNGK-FFAWDGQEI 280 (282)
Q Consensus 264 ~~~~~~g~-~~~~d~~~~ 280 (282)
..+..+|. .+..++|.+
T Consensus 223 ~~~~~~~~~~i~p~~G~v 240 (240)
T d2bd0a1 223 PSRTVVEEIILRPTSGDI 240 (240)
T ss_dssp CTTEEEEEEEEEETTCCC
T ss_pred CccCccCCEEEEecCCCC
Confidence 77766665 454676653
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=8e-47 Score=322.32 Aligned_cols=238 Identities=20% Similarity=0.250 Sum_probs=207.3
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC---CceeEEEeeCCChhHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP---ERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~---~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.++||++|||||++|||+++|++|+++|++ |++++|++++++++.+++.+.+ .++.+++||++|+++++++++++
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~Ga~--V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQ--VTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTT 78 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHH
Confidence 378999999999999999999999999998 9999999988887666554433 37899999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++||+||++|||||.... ......+.+.++|++.+++|+.+++.+++.+.|.|++++.| .|+++||..
T Consensus 79 ~~~~G~iDilVnnAG~~~~-----~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g------~ii~~ss~~ 147 (274)
T d1xhla_ 79 LAKFGKIDILVNNAGANLA-----DGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGE------IVNVSSIVA 147 (274)
T ss_dssp HHHHSCCCEEEECCCCCCC-----CSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE------EEEECCGGG
T ss_pred HHHcCCceEEEeecccccc-----cccccccCCHHHHHHHHhhcccccccccccccccccccccc------cccchhhhh
Confidence 9999999999999997641 12344556778999999999999999999999999987664 888899888
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-----------------ccCCCC
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-----------------QRNVPE 244 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-----------------~~~~~~ 244 (282)
+..+ .++...|+++|+|+.+|+|+++.|++++ |||||+|+||+++|++.+.. ....|.
T Consensus 148 ~~~~---~~~~~~Y~asKaal~~ltk~lA~ela~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iPl 222 (274)
T d1xhla_ 148 GPQA---HSGYPYYACAKAALDQYTRCTAIDLIQH--GVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPV 222 (274)
T ss_dssp SSSC---CTTSHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTT
T ss_pred cccc---CCCCceehhhhhHHHHHHHHHHHHHhHh--CCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCCC
Confidence 7766 6778899999999999999999999999 89999999999999975422 233567
Q ss_pred CCCCChHHHHHHHHHHHhh-cCCCCCCceeecCCccc
Q 023441 245 GKLFTKEFSVQKLLNIINN-IKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~-~~~~~~g~~~~~d~~~~ 280 (282)
.+..+|+|+|+.+.+++++ ..+++||+.+.+|||+.
T Consensus 223 gR~g~pediA~~v~fL~S~d~s~~itG~~i~vDGG~~ 259 (274)
T d1xhla_ 223 GHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGST 259 (274)
T ss_dssp SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHcCCccccCccCcEEEeCcCHH
Confidence 7888999999999999984 57899999999999973
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=8.3e-47 Score=321.99 Aligned_cols=240 Identities=19% Similarity=0.243 Sum_probs=204.3
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC---CceeEEEeeCCChhHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP---ERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~---~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.++||++|||||++|||+++|++|+++|++ |++++|++++++++.+++.+.+ .++.+++||++|+++++++++++
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~--V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 79 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGAN--VTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST 79 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHH
Confidence 589999999999999999999999999998 9999999998887766655443 37999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++||+||+||||||....... .....+.+.+.|++.+++|+.+++.+++++.|.|++++. +.|+++||..
T Consensus 80 ~~~~g~iDilvnnAG~~~~~~~---~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g------~iI~~~Ss~a 150 (272)
T d1xkqa_ 80 LKQFGKIDVLVNNAGAAIPDAF---GTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKG------EIVNVSSIVA 150 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCCTT---CCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC------EEEEECCGGG
T ss_pred HHHhCCceEEEeCCcccCcccc---cccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCC------ccccccchhc
Confidence 9999999999999998752111 123345667789999999999999999999999987653 2555555566
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-----------------ccCCCC
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF-----------------QRNVPE 244 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~-----------------~~~~~~ 244 (282)
+..+ .++...|+++|+|+.+|+++|+.|++++ +||||+|+||+++|++.+.. ....|.
T Consensus 151 ~~~~---~~~~~~Y~asKaal~~ltk~lA~el~~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl 225 (272)
T d1xkqa_ 151 GPQA---QPDFLYYAIAKAALDQYTRSTAIDLAKF--GIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPI 225 (272)
T ss_dssp SSSC---CCSSHHHHHHHHHHHHHHHHHHHHHHTT--TCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTT
T ss_pred cccC---CCCcchhhhHHHHHHHHHHHHHHHhccc--CeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCCCC
Confidence 6666 6788999999999999999999999999 89999999999999975422 234566
Q ss_pred CCCCChHHHHHHHHHHHhhc-CCCCCCceeecCCccc
Q 023441 245 GKLFTKEFSVQKLLNIINNI-KSHDNGKFFAWDGQEI 280 (282)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~-~~~~~g~~~~~d~~~~ 280 (282)
.+..+|+|+|+.+.+++++. +.++||+.+.+|||+.
T Consensus 226 gR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG~~ 262 (272)
T d1xkqa_ 226 GAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTS 262 (272)
T ss_dssp SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcCHH
Confidence 78889999999999999865 5789999999999973
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=8.8e-47 Score=320.58 Aligned_cols=239 Identities=19% Similarity=0.237 Sum_probs=195.0
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC---CceeEEEeeCCChhHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP---ERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~---~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.++||++|||||++|||+++|++|+++|++ |++++|++++++++.+.+...+ .++.++++|++|+++++++++++
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~--V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~ 79 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAK--VTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT 79 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHH
Confidence 378999999999999999999999999998 9999999998887666554432 36999999999999999999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc-
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR- 180 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~- 180 (282)
.++||+||+||||||...... ...+..+.+.++|++.+++|+.+++.+++.+.|.|++++. .+|+++|.
T Consensus 80 ~~~~g~iDilvnnAG~~~~~~---~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g-------~iI~~~S~~ 149 (264)
T d1spxa_ 80 LGKFGKLDILVNNAGAAIPDS---QSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKG-------EIVNISSIA 149 (264)
T ss_dssp HHHHSCCCEEEECCC----------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-------EEEEECCTT
T ss_pred HHHhCCCCEeecccccccCCc---cccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccC-------cceeeeeec
Confidence 999999999999999864111 1234556678999999999999999999999999987653 45555554
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-----------------cCCC
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-----------------RNVP 243 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-----------------~~~~ 243 (282)
.+..+ .+....|+++|+|+.+|+++|+.|++++ |||||+|+||+++|++.+... ...|
T Consensus 150 ~~~~~---~~~~~~Y~asKaal~~lt~~lA~el~~~--gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~P 224 (264)
T d1spxa_ 150 SGLHA---TPDFPYYSIAKAAIDQYTRNTAIDLIQH--GIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVP 224 (264)
T ss_dssp SSSSC---CTTSHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCBCCCC--------------HHHHHHHHHHCT
T ss_pred ccccc---CCCchhhhhhhhhHHHHHHHHHHHhccc--CeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcCC
Confidence 44555 6778899999999999999999999999 899999999999999865431 1245
Q ss_pred CCCCCChHHHHHHHHHHHhh-cCCCCCCceeecCCccc
Q 023441 244 EGKLFTKEFSVQKLLNIINN-IKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~-~~~~~~g~~~~~d~~~~ 280 (282)
..+..+|+|+|+.+.+++++ ..+++||+.+.+|||+.
T Consensus 225 l~R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG~s 262 (264)
T d1spxa_ 225 AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSS 262 (264)
T ss_dssp TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHhCCcccCCccCceEEeCCChh
Confidence 56788999999999999985 47899999999999974
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5e-46 Score=320.39 Aligned_cols=237 Identities=19% Similarity=0.242 Sum_probs=207.3
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc-----cCCCceeEEEeeCCChhHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN-----RFPERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~-----~~~~~v~~~~~Dls~~~~~~~~ 97 (282)
+=.|+||++|||||++|||+++|++|+++|++ |++++|+.+++++..+.+. ..+.++.+++||++|+++++++
T Consensus 7 ~g~L~gKvalITGas~GIG~aia~~la~~Ga~--Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~ 84 (297)
T d1yxma1 7 PGLLQGQVAIVTGGATGIGKAIVKELLELGSN--VVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNL 84 (297)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHH
Confidence 33489999999999999999999999999998 9999999988776544332 2356899999999999999999
Q ss_pred HHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEe
Q 023441 98 AKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANL 177 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ 177 (282)
++++.+++|+||+||||||... ..++.+.+.++|++.+++|+.+++++++.+.|.|.+++.| .||++
T Consensus 85 ~~~~~~~~G~iDiLVnnAg~~~-------~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g------~Ii~~ 151 (297)
T d1yxma1 85 VKSTLDTFGKINFLVNNGGGQF-------LSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGG------SIVNI 151 (297)
T ss_dssp HHHHHHHHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCE------EEEEE
T ss_pred HHHHHHHhCCeEEEEeeccccc-------cCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccccc------ccccc
Confidence 9999999999999999999875 6778889999999999999999999999999999987765 78887
Q ss_pred eccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc------------ccCCCCC
Q 023441 178 SARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF------------QRNVPEG 245 (282)
Q Consensus 178 ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~------------~~~~~~~ 245 (282)
|+. +..+ .+....|+++|+|+.+|+|++|.|++++ |||||+|+||+++|++.... ....|..
T Consensus 152 ss~-~~~~---~~~~~~Y~asKaal~~ltk~lA~el~~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~plg 225 (297)
T d1yxma1 152 IVP-TKAG---FPLAVHSGAARAGVYNLTKSLALEWACS--GIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAK 225 (297)
T ss_dssp CCC-CTTC---CTTCHHHHHHHHHHHHHHHHHHHHTGGG--TEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTTS
T ss_pred ccc-cccc---ccccccchhHHHHHHHHHHHHHHHhccc--CceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCCC
Confidence 664 3333 5678899999999999999999999999 99999999999999975321 2234556
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+..+|+|+|..+.+++++...++||+.+.+|||+-
T Consensus 226 R~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDGG~s 260 (297)
T d1yxma1 226 RIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRS 260 (297)
T ss_dssp SCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHhCchhcCcCCcEEEeCcChh
Confidence 77899999999999999999999999999999974
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=2.5e-46 Score=316.93 Aligned_cols=236 Identities=20% Similarity=0.248 Sum_probs=205.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec-CCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-NPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r-~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.+|.||++|||||++|||+++|++|+++|++ |++.++ +.+..+.+.+++++.+.++++++||++|+++++++++++.
T Consensus 2 ~~L~GK~alITGas~GIG~aia~~la~~G~~--Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~ 79 (259)
T d1ja9a_ 2 KPLAGKVALTTGAGRGIGRGIAIELGRRGAS--VVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAV 79 (259)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE--EEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999998 777654 4455666777888888899999999999999999999999
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
+++|+||++|||||... ..+..+.+.+.|++.+++|+.+++++++.+.|.|++++ .+++++|..+
T Consensus 80 ~~~g~idilinnag~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g--------~~iii~s~~~ 144 (259)
T d1ja9a_ 80 SHFGGLDFVMSNSGMEV-------WCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGG--------RIILTSSIAA 144 (259)
T ss_dssp HHHSCEEEEECCCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEE--------EEEEECCGGG
T ss_pred HHcCCCcEEEecccccc-------ccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCC--------cccccccccc
Confidence 99999999999999875 66778888999999999999999999999999997653 5556656555
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------------------ccC
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------------------QRN 241 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------------------~~~ 241 (282)
... +.+.+..|+++|+++.+|+|+|++|++++ +||||+|+||+++|++.+.. ...
T Consensus 145 ~~~--~~~~~~~Y~asK~al~~l~r~lA~e~~~~--gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (259)
T d1ja9a_ 145 VMT--GIPNHALYAGSKAAVEGFCRAFAVDCGAK--GVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANM 220 (259)
T ss_dssp TCC--SCCSCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHT
T ss_pred ccc--CCCCchhHHHHHHHHHHHHHHHHHHHhhc--CeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhC
Confidence 432 26788999999999999999999999998 89999999999999864311 123
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 242 VPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.|..++.+|+|+|+.+.+++++..+++||+.+.+|||++
T Consensus 221 ~pl~R~g~p~eVa~~v~fL~S~~a~~itG~~i~vDGG~~ 259 (259)
T d1ja9a_ 221 NPLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGGGI 259 (259)
T ss_dssp STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCC
T ss_pred CCCCCCcCHHHHHHHHHHHhCchhcCCcCceEEeCCCCC
Confidence 455678899999999999999999999999999999985
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=100.00 E-value=8e-46 Score=310.31 Aligned_cols=229 Identities=21% Similarity=0.264 Sum_probs=199.4
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
|+||++|||||++|||+++|++|+++|++ |++++|+.+++++. .++.+.++.+++||++++++++++++++.+++
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~--V~~~~r~~~~~~~~---~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGAS--LVAVDREERLLAEA---VAALEAEAIAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHH---HHTCCSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHH---HHHcCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999998 99999998776543 33446789999999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
|++|+||||||... ..++.+.+.++|++.+++|+.+++.+++.+.|++.+++ .++++|+.+.. .
T Consensus 78 g~iDiLinnAg~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~--------~i~~~ss~a~~-~ 141 (241)
T d2a4ka1 78 GRLHGVAHFAGVAH-------SALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGG--------SLVLTGSVAGL-G 141 (241)
T ss_dssp SCCCEEEEGGGGTT-------TTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC--------EEEEECCCTTC-C
T ss_pred CCccEecccccccc-------ccchhhhhcccccccccccccccccccccccccccccc--------ceeeccccccc-c
Confidence 99999999999875 56778889999999999999999999999999987654 56666665433 2
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc--------ccCCCCCCCCChHHHHHHH
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--------QRNVPEGKLFTKEFSVQKL 257 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--------~~~~~~~~~~~~~~~a~~~ 257 (282)
.+++..|+++|+|+++|+++|++|++++ |||||+|+||+++|++.+.. .+..|..++.+|+|+|+.+
T Consensus 142 ---~~~~~~Y~~sK~al~~lt~~lA~el~~~--gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v 216 (241)
T d2a4ka1 142 ---AFGLAHYAAGKLGVVGLARTLALELARK--GVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPLGRAGRPEEVAQAA 216 (241)
T ss_dssp ---HHHHHHHHHCSSHHHHHHHHHHHHHTTT--TCEEEEEEECSBCCGGGTTSCHHHHHHHHHTSTTCSCBCHHHHHHHH
T ss_pred ---ccCccccchhhHHHHHHHHHHHHHHhHh--CCEEeeeccCcCCCHHHHhhhHhHHHHHHhCCCCCCCcCHHHHHHHH
Confidence 3567899999999999999999999999 89999999999999987643 3456778888999999999
Q ss_pred HHHHhhcCCCCCCceeecCCccc
Q 023441 258 LNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 258 ~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+++++..+++||+.+.+|||+.
T Consensus 217 ~fL~S~~s~~itG~~i~vDGG~s 239 (241)
T d2a4ka1 217 LFLLSEESAYITGQALYVDGGRS 239 (241)
T ss_dssp HHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHhcchhCCCcCceEEeCCCcc
Confidence 99999999999999999999974
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=100.00 E-value=1e-45 Score=315.83 Aligned_cols=237 Identities=19% Similarity=0.248 Sum_probs=201.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+|+||++|||||++|||+++|++|+++|++ |++++|++++++++.+. .+.++.++++|++++++++++++++.+
T Consensus 1 M~L~gK~alITGas~GIG~aia~~la~~Ga~--V~i~~r~~~~l~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 75 (276)
T d1bdba_ 1 MKLKGEAVLITGGASGLGRALVDRFVAEGAK--VAVLDKSAERLAELETD---HGDNVLGIVGDVRSLEDQKQAASRCVA 75 (276)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHH---HGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHH---cCCCeeEEecccccHHHHHHHHHHHHH
Confidence 6799999999999999999999999999998 99999998776654433 356899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+||++|++|||||+...... ......+.+.+.|++.+++|+.+++.+++.+.|.|++++ | .+|+++|..+.
T Consensus 76 ~~g~idilvnnAG~~~~~~~--~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g------~iI~i~S~~~~ 146 (276)
T d1bdba_ 76 RFGKIDTLIPNAGIWDYSTA--LVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-G------NVIFTISNAGF 146 (276)
T ss_dssp HHSCCCEEECCCCCCCTTCC--GGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C------EEEEECCGGGT
T ss_pred HhCCcccccccccccCCCCc--cccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-C------Cceeeeechhc
Confidence 99999999999998742111 112223444567999999999999999999999998765 3 78899998887
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc------------------ccCCCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF------------------QRNVPEG 245 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~------------------~~~~~~~ 245 (282)
.+ .++...|+++|+|+.+|+|+++.|+++ +||||+|+||+++|++.... ....|..
T Consensus 147 ~~---~~~~~~Y~asKaal~~ltr~lA~ela~---~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~Plg 220 (276)
T d1bdba_ 147 YP---NGGGPLYTAAKHAIVGLVRELAFELAP---YVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIG 220 (276)
T ss_dssp ST---TSSCHHHHHHHHHHHHHHHHHHHHHTT---TCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTTS
T ss_pred cC---CCCCchHHHHHHHHHHHHHHHHHHhhc---ceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCCC
Confidence 76 677889999999999999999999985 49999999999999985421 2335567
Q ss_pred CCCChHHHHHHHHHHHhh-cCCCCCCceeecCCccc
Q 023441 246 KLFTKEFSVQKLLNIINN-IKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~-~~~~~~g~~~~~d~~~~ 280 (282)
+..+|+|+|+.+.+++++ ...++||+.+.+|||+.
T Consensus 221 R~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG~~ 256 (276)
T d1bdba_ 221 RMPEVEEYTGAYVFFATRGDAAPATGALLNYDGGLG 256 (276)
T ss_dssp SCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSSGG
T ss_pred CCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcChh
Confidence 788999999999999974 57899999999999974
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=4.4e-45 Score=311.44 Aligned_cols=239 Identities=21% Similarity=0.308 Sum_probs=209.8
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC-cccccccccccCCCceeEEEeeCCChhHHHHHHH
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN-GATGLLDLKNRFPERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~-~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
..+.+|+||++|||||++|||+++|++|+++|++ |++++|+.+ .++.+.+.+.+.+.++.++++|++|+++++++++
T Consensus 11 ~~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~--Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~ 88 (272)
T d1g0oa_ 11 PQSASLEGKVALVTGAGRGIGREMAMELGRRGCK--VIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFE 88 (272)
T ss_dssp GGGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE--EEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHH
Confidence 4667899999999999999999999999999998 999888754 4555667777778899999999999999999999
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
++.+.+|++|++|||+|... ..++.+.+.++|++.+++|+.+++.+++.+.|.|.+++ ++++++|
T Consensus 89 ~~~~~~g~idilV~nag~~~-------~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g--------~~i~i~s 153 (272)
T d1g0oa_ 89 EAVKIFGKLDIVCSNSGVVS-------FGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGG--------RLILMGS 153 (272)
T ss_dssp HHHHHHSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTC--------EEEEECC
T ss_pred HHHHHhCCCCccccccccch-------hhhhhhhhhhHHHHHhhhccceeeeecccccccccccc--------ccccccc
Confidence 99999999999999999875 67788889999999999999999999999999998764 6677777
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------------------
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF--------------------- 238 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~--------------------- 238 (282)
..+... +.+.+..|+++|+++++|+|+++.|++++ +||||+|+||+++|++.+.+
T Consensus 154 ~~~~~~--~~~~~~~Y~asKaal~~ltk~lA~e~~~~--gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (272)
T d1g0oa_ 154 ITGQAK--AVPKHAVYSGSKGAIETFARCMAIDMADK--KITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAA 229 (272)
T ss_dssp GGGTCS--SCSSCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHH
T ss_pred cccccc--cccchhhHHHHHHHHHHHHHHHHHHhchh--CeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHH
Confidence 665433 25677889999999999999999999998 99999999999999875321
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 239 QRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 239 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
....|..+..+|+|+|..+.+++++...++||+.+.+|||..
T Consensus 230 ~~~~PlgR~~~peevA~~v~fL~s~~s~~itG~~i~vDGG~~ 271 (272)
T d1g0oa_ 230 VQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGAC 271 (272)
T ss_dssp HHSCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCC
T ss_pred HccCCCCCCcCHHHHHHHHHHHhCchhcCccCceEeECCCCC
Confidence 123556788899999999999999989999999999999974
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-45 Score=311.85 Aligned_cols=227 Identities=21% Similarity=0.320 Sum_probs=196.7
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc-C-CCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR-F-PERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~-~-~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++||++|||||++|||+++|++|+++|++ |++++|+.+++++..+.+.+ . +.++.+++||++|+++++++++++.+
T Consensus 1 i~GKvalITGas~GIG~aia~~la~~Ga~--V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (254)
T d2gdza1 1 VNGKVALVTGAAQGIGRAFAEALLLKGAK--VALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD 78 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999998 99999999988775554433 2 35899999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++|+||+||||||... .+.|++.+++|+.+++.+++.+.|.|.+++.+ ..++||++||..+.
T Consensus 79 ~~G~iDilVnnAg~~~---------------~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~---~~g~Iv~isS~~~~ 140 (254)
T d2gdza1 79 HFGRLDILVNNAGVNN---------------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGG---EGGIIINMSSLAGL 140 (254)
T ss_dssp HHSCCCEEEECCCCCC---------------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTC---CCEEEEEECCGGGT
T ss_pred HcCCcCeecccccccc---------------cccchheeeeehhhHHHHHHHHHHHHHHhhcC---CCcEEEeeccHhhc
Confidence 9999999999999864 24688999999999999999999999876432 23599999999988
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHH--HHHHhccCCCCeEEEEEecccccCCCCcccccC----------------CCCC
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKS--VSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN----------------VPEG 245 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~--la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~----------------~~~~ 245 (282)
.+ .++...|++||+|+.+|+|+ |+.|++++ +||||+|+||+++|+|.+..... .|..
T Consensus 141 ~~---~~~~~~Y~asKaal~~ltrs~ala~e~~~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 215 (254)
T d2gdza1 141 MP---VAQQPVYCASKHGIVGFTRSAALAANLMNS--GVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYY 215 (254)
T ss_dssp SC---CTTCHHHHHHHHHHHHHHHHHHHHHHHHTC--CEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHHH
T ss_pred cC---CCCccchHHHHHHHHHHHHHHHHHHHhcCC--CEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcCCCC
Confidence 77 67888999999999999997 78899998 99999999999999987643221 1234
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+..+|+|+|+.+.+++++ +.+||+.+.+|||+
T Consensus 216 r~~~pedvA~~v~fL~s~--~~itG~~i~VdGG~ 247 (254)
T d2gdza1 216 GILDPPLIANGLITLIED--DALNGAIMKITTSK 247 (254)
T ss_dssp CCBCHHHHHHHHHHHHHC--TTCSSCEEEEETTT
T ss_pred CCcCHHHHHHHHHHHHcC--CCCCCCEEEECCCC
Confidence 667999999999999986 35999999999986
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=4.1e-46 Score=321.53 Aligned_cols=236 Identities=17% Similarity=0.244 Sum_probs=203.9
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc------cccccccCCCceeEEEeeCCChhHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG------LLDLKNRFPERLDVLQLDLTVESTIE 95 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~------~~~~~~~~~~~v~~~~~Dls~~~~~~ 95 (282)
.||+++||++|||||++|||+++|++|+++|++ |++.+|+.+.... +.+...+.+.+.....+|++|.++++
T Consensus 1 sPm~l~gKvalITGas~GIG~aiA~~la~~Ga~--Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 78 (302)
T d1gz6a_ 1 SPLRFDGRVVLVTGAGGGLGRAYALAFAERGAL--VVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGE 78 (302)
T ss_dssp CCCCCTTCEEEETTTTSHHHHHHHHHHHHTTCE--EEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHH
T ss_pred CCcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCE--EEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHH
Confidence 478999999999999999999999999999998 9999887653311 12222222345667889999999999
Q ss_pred HHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEE
Q 023441 96 ASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVA 175 (282)
Q Consensus 96 ~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv 175 (282)
++++.+.+++|+||+||||||+.. ..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||
T Consensus 79 ~~v~~~~~~~G~iDiLVnNAGi~~-------~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G------~IV 145 (302)
T d1gz6a_ 79 KLVKTALDTFGRIDVVVNNAGILR-------DRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYG------RII 145 (302)
T ss_dssp HHHHHHHHHTSCCCEEEECCCCCC-------CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE------EEE
T ss_pred HHHHHHHHHcCCCCEEEECCccCC-------CCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCc------EEE
Confidence 999999999999999999999985 6788899999999999999999999999999999988765 999
Q ss_pred EeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHH
Q 023441 176 NLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQ 255 (282)
Q Consensus 176 ~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~ 255 (282)
++||..+..+ .++...|++||+++.+|+++|+.|++++ |||||+|+||++.|++...+.. +..+..+|+++|+
T Consensus 146 ~isS~~~~~~---~~~~~~Y~asKaal~~lt~~la~E~~~~--gIrVN~I~PG~~~t~~~~~~~~--~~~~~~~PedvA~ 218 (302)
T d1gz6a_ 146 MTASASGIYG---NFGQANYSAAKLGLLGLANTLVIEGRKN--NIHCNTIAPNAGSRMTETVMPE--DLVEALKPEYVAP 218 (302)
T ss_dssp EECCHHHHHC---CTTCHHHHHHHHHHHHHHHHHHHHTGGG--TEEEEEEEEECCSTTTGGGSCH--HHHHHSCGGGTHH
T ss_pred EeCChhhcCC---CCCcHHHHHHHHHHHHHHHHHHHHHhcc--CCceeeeCCCCCCcchhhcCcH--hhHhcCCHHHHHH
Confidence 9999999877 6788999999999999999999999999 9999999999998877554332 2234568999999
Q ss_pred HHHHHHhhcCCCCCCceeecCCccc
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+.+++++.. .+||+.+.+||||+
T Consensus 219 ~v~fL~S~~a-~itG~~i~vdGG~~ 242 (302)
T d1gz6a_ 219 LVLWLCHESC-EENGGLFEVGAGWI 242 (302)
T ss_dssp HHHHHTSTTC-CCCSCEEEEETTEE
T ss_pred HHHHHcCCCc-CCCCcEEEeCCCce
Confidence 9999998655 68999999999986
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.2e-45 Score=303.00 Aligned_cols=222 Identities=18% Similarity=0.202 Sum_probs=195.7
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
|+||++|||||++|||+++|++|+++|++ |++++|+++.+++ ....++.||+++. ++.+.+++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~--V~~~~r~~~~l~~---------~~~~~~~~Dv~~~------~~~~~~~~ 64 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAE--VTICARNEELLKR---------SGHRYVVCDLRKD------LDLLFEKV 64 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHH---------TCSEEEECCTTTC------HHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHh---------cCCcEEEcchHHH------HHHHHHHh
Confidence 68999999999999999999999999998 9999998765432 1235678999864 45566788
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
++||+||||||... ..++.+.+.++|++.+++|+.+++.+++.+.|.|++++.| +||+++|..+..+
T Consensus 65 g~iD~lVnnAG~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G------~ii~i~S~~~~~~ 131 (234)
T d1o5ia_ 65 KEVDILVLNAGGPK-------AGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWG------RIVAITSFSVISP 131 (234)
T ss_dssp CCCSEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCGGGTSC
T ss_pred CCCcEEEecccccC-------CcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccc------ccccccccccccc
Confidence 99999999999874 6678889999999999999999999999999999987765 9999999887766
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---------ccCCCCCCCCChHHHHHH
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------QRNVPEGKLFTKEFSVQK 256 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------~~~~~~~~~~~~~~~a~~ 256 (282)
.+....|+++|+++.+|+|+++.|++++ +||||+|+||+++|++.+.. .+..|..+..+|+|+|+.
T Consensus 132 ---~~~~~~Y~asKaal~~ltk~lA~ela~~--gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~pl~R~~~pediA~~ 206 (234)
T d1o5ia_ 132 ---IENLYTSNSARMALTGFLKTLSFEVAPY--GITVNCVAPGWTETERVKELLSEEKKKQVESQIPMRRMAKPEEIASV 206 (234)
T ss_dssp ---CTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTSTTSSCBCHHHHHHH
T ss_pred ---ccccccchhHHHHHHHHHHHHHHHhccc--CeEEeecccCccchhhhhhhcCHHHHHHHHhcCCCCCCcCHHHHHHH
Confidence 6788899999999999999999999999 89999999999999986532 235677888899999999
Q ss_pred HHHHHhhcCCCCCCceeecCCcccCC
Q 023441 257 LLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 257 ~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
+.+++++..+++||+.+.+|||+-.|
T Consensus 207 v~fL~S~~s~~itG~~i~vDGG~s~~ 232 (234)
T d1o5ia_ 207 VAFLCSEKASYLTGQTIVVDGGLSKF 232 (234)
T ss_dssp HHHHHSGGGTTCCSCEEEESTTCCCC
T ss_pred HHHHhChhhcCCcCcEEEECcccccC
Confidence 99999999999999999999998766
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.5e-45 Score=308.26 Aligned_cols=239 Identities=21% Similarity=0.262 Sum_probs=199.6
Q ss_pred cccccCcEEEEecCCC--chhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASR--GIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 23 ~~~~~gk~vlItGas~--giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
.++|+||++|||||+| |||+++|++|+++|++ |++.+|+++..+...+.... +.+..++++|++|++++++++++
T Consensus 3 ~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~--V~i~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~ 79 (256)
T d1ulua_ 3 TVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAE--VALSYQAERLRPEAEKLAEA-LGGALLFRADVTQDEELDALFAG 79 (256)
T ss_dssp EECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCE--EEEEESSGGGHHHHHHHHHH-TTCCEEEECCTTCHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCE--EEEEeCcHHHHHHHHHhhhc-cCcccccccccCCHHHHHHHHHH
Confidence 4689999999999987 9999999999999998 89999986554444333333 44678899999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.+++|+||+||||||...... ...+..+.+.++|+..+++|+.+++.+++.+.|.|+++ ++||++||.
T Consensus 80 ~~~~~g~iDilVnnag~~~~~~---~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~--------G~Iv~isS~ 148 (256)
T d1ulua_ 80 VKEAFGGLDYLVHAIAFAPREA---MEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREG--------GGIVTLTYY 148 (256)
T ss_dssp HHHHHSSEEEEEECCCCCCHHH---HSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE--------EEEEEEECG
T ss_pred HHHhcCCceEEEeccccccccc---cccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccC--------CEEEEEeeh
Confidence 9999999999999999864100 12345677788999999999999999999999998764 389999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCCh
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTK 250 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~ 250 (282)
.+..+ .++...|+++|+++.+|+|+++.|++++ +||||+|+||+++|++..... +..|..+..+|
T Consensus 149 ~~~~~---~~~~~~Y~asKaal~~ltr~lA~ela~~--gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~pl~R~~~p 223 (256)
T d1ulua_ 149 ASEKV---VPKYNVMAIAKAALEASVRYLAYELGPK--GVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQ 223 (256)
T ss_dssp GGTSB---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEEEECCC----------CHHHHHHHHHHSTTSSCCCH
T ss_pred HhcCC---CCCchHHHHHHHHHHHHHHHHHHHhccc--CCEEeeeccceeeeccccchhhhHHHHHHHHhcCCCCCCcCH
Confidence 98877 6788999999999999999999999999 899999999999999765422 23567788899
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 251 EFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+|+|+.+.+++++..+++||+.+.+|||+.
T Consensus 224 edvA~~v~fL~S~~s~~itG~~i~VDGG~~ 253 (256)
T d1ulua_ 224 EEVGNLGLFLLSPLASGITGEVVYVDAGYH 253 (256)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHhCchhCCccCCeEEECcCEe
Confidence 999999999999999999999999999974
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=3.9e-45 Score=308.28 Aligned_cols=226 Identities=15% Similarity=0.137 Sum_probs=201.5
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
|+|||||++|||+++|++|+++|++ |++++|+.+.++++..... .+.++|++|.++++++++++.++||+||
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~--V~i~~r~~~~~~~~~~~~~------~~~~~dv~~~~~~~~~~~~~~~~~G~iD 73 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHT--VACHDESFKQKDELEAFAE------TYPQLKPMSEQEPAELIEAVTSAYGQVD 73 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCE--EEECCGGGGSHHHHHHHHH------HCTTSEECCCCSHHHHHHHHHHHHSCCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHhhhC------cEEEeccCCHHHHHHHHHHHHHHcCCCC
Confidence 7999999999999999999999988 9999999887765544322 2346999999999999999999999999
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCC
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRL 189 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~ 189 (282)
+||||||... +..++.+.+.++|++.+++|+.+++++++.+.|.|++++.| +||++||..+..+ .
T Consensus 74 iLVnNAg~~~------~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G------~IV~isS~~~~~~---~ 138 (252)
T d1zmta1 74 VLVSNDIFAP------EFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSG------HIIFITSATPFGP---W 138 (252)
T ss_dssp EEEEECCCCC------CCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC------EEEEECCSTTTSC---C
T ss_pred EEEECCcCCC------CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccc------eeecccccccccc---c
Confidence 9999999864 24678889999999999999999999999999999998876 9999999998877 6
Q ss_pred CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------------cCCCCCCCCChHHH
Q 023441 190 GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------------RNVPEGKLFTKEFS 253 (282)
Q Consensus 190 ~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------------~~~~~~~~~~~~~~ 253 (282)
+....|+++|+++.+|+|+++.|++++ +||||+|+||+++|++...+. +..|..+..+|+|+
T Consensus 139 ~~~~~Y~asKaal~~lt~~lA~ela~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl~R~g~pedv 216 (252)
T d1zmta1 139 KELSTYTSARAGACTLANALSKELGEY--NIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKEL 216 (252)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGG--TCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSSSCBCHHHH
T ss_pred ccccccccccccHHHHHHHHHHHhccc--CcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCCCCCcCHHHH
Confidence 778899999999999999999999999 899999999999999865432 23456778899999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+.+.+++++..+++||+.+.+|||+.
T Consensus 217 A~~v~fL~S~~s~~iTG~~i~vdGG~~ 243 (252)
T d1zmta1 217 GELVAFLASGSCDYLTGQVFWLAGGFP 243 (252)
T ss_dssp HHHHHHHHTTSCGGGTTCEEEESTTCC
T ss_pred HHHHHHHhCchhcCCcCCeEEECCCce
Confidence 999999999999999999999999974
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=3.5e-44 Score=301.89 Aligned_cols=236 Identities=32% Similarity=0.536 Sum_probs=200.0
Q ss_pred cEEEEecCCCchhHHHHHHHH---hcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH--
Q 023441 29 GVSLVQGASRGIGLEFAKQLL---EKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE-- 103 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la---~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~-- 103 (282)
|++|||||++|||+++|++|+ ++|++ |++.+|++++++.+.++.+. +.++.+++||++|+++++++++.+.+
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~~--V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 79 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQH--LFTTCRNREQAKELEDLAKN-HSNIHILEIDLRNFDAYDKLVADIEGVT 79 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCSE--EEEEESCTTSCHHHHHHHHH-CTTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCCE--EEEEECCHHHHHHHHHHHhc-CCcEEEEEEEeccHHHHHHHHhhhHHHh
Confidence 799999999999999999996 46776 99999999998876655443 56899999999999999999999854
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCC-----CccceeEEEEee
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTG-----IERDVAVVANLS 178 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g-----~~~~~~~iv~~s 178 (282)
+++++|+||||||+.. +..+..+.+.++|++.+++|+.+++.+++.+.|.|+++..+ .....+.+|+++
T Consensus 80 ~~~~iDiLvnNAg~~~------~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~ 153 (248)
T d1snya_ 80 KDQGLNVLFNNAGIAP------KSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMS 153 (248)
T ss_dssp GGGCCSEEEECCCCCC------CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEEC
T ss_pred hcCCcceEEeeccccc------cCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccccc
Confidence 6789999999999874 24456778889999999999999999999999999764210 011224999999
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHH
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLL 258 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~ 258 (282)
|..+....++.++...|++||+|+.+|+++++.|++++ +|+||+|+||+++|+|.+...+ ..+++.++.++
T Consensus 154 S~~g~~~~~~~~~~~~Y~aSKaal~~lt~~la~e~~~~--gI~vn~v~PG~v~T~m~~~~~~-------~~~~~~~~~i~ 224 (248)
T d1snya_ 154 SILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQ--RIMCVSLHPGWVKTDMGGSSAP-------LDVPTSTGQIV 224 (248)
T ss_dssp CGGGCSTTCCSCCCHHHHHHHHHHHHHHHHHHHHHGGG--TCEEEEECCCSBCSTTTCTTCS-------BCHHHHHHHHH
T ss_pred ccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCC--CeEEEEcCCCcccCCcccccCC-------CCchHHHHHHH
Confidence 99988776667788899999999999999999999998 8999999999999999765321 35667777788
Q ss_pred HHHhhcCCCCCCceeecCCcccCC
Q 023441 259 NIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 259 ~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
..+.......+|++|.+||+++||
T Consensus 225 ~~i~~l~~~~tG~~i~~dG~~ipW 248 (248)
T d1snya_ 225 QTISKLGEKQNGGFVNYDGTPLAW 248 (248)
T ss_dssp HHHHHCCGGGTTCEECTTSCBCCC
T ss_pred HHHHhcCccCCCcEEEECCeEcCC
Confidence 888877777899999999999999
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-44 Score=306.11 Aligned_cols=240 Identities=20% Similarity=0.270 Sum_probs=203.4
Q ss_pred cc-ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC--CceeEEEeeCCChhHHHHHHHH
Q 023441 24 VK-WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP--ERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 24 ~~-~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~--~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
|+ |+||++|||||++|||+++|+.|+++|++ |++++|++++++++.+++.+.+ .++.+++||+++++++++++++
T Consensus 5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~--Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~ 82 (257)
T d1xg5a_ 5 MERWRDRLALVTGASGGIGAAVARALVQQGLK--VVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSA 82 (257)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHH
Confidence 44 99999999999999999999999999998 9999999988888766665443 4899999999999999999999
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
+.+++|+||+||||||... ..++.+.+.+.|++.+++|+.+++++.+.+.|.|.+++.. .++||++||.
T Consensus 83 ~~~~~g~iD~lVnnAg~~~-------~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~----~g~Ii~isS~ 151 (257)
T d1xg5a_ 83 IRSQHSGVDICINNAGLAR-------PDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVD----DGHIININSM 151 (257)
T ss_dssp HHHHHCCCSEEEECCCCCC-------CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCC----SCEEEEECCG
T ss_pred HHHhcCCCCEEEecccccC-------CCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccC----CCceEEEech
Confidence 9999999999999999875 6678889999999999999999999999999998876421 1399999999
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCCCCCCChHH
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPEGKLFTKEF 252 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~ 252 (282)
.+.... |......|+++|+++.+|+++|+.|+...+.+|+||+|+||+++|++..... ...+..+..+|+|
T Consensus 152 ~~~~~~-p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~r~~~ped 230 (257)
T d1xg5a_ 152 SGHRVL-PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPED 230 (257)
T ss_dssp GGTSCC-SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHHC---CBCHHH
T ss_pred HhcCCC-CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhcCCCCCCcCHHH
Confidence 886542 2455677999999999999999999943333999999999999999765332 2345567889999
Q ss_pred HHHHHHHHHhhcCCCCCCce-eecCC
Q 023441 253 SVQKLLNIINNIKSHDNGKF-FAWDG 277 (282)
Q Consensus 253 ~a~~~~~~~~~~~~~~~g~~-~~~d~ 277 (282)
+|+.+++++++..++++|+. +..+|
T Consensus 231 vA~~v~fL~s~~a~~itG~i~i~~~g 256 (257)
T d1xg5a_ 231 VAEAVIYVLSTPAHIQIGDIQMRPTG 256 (257)
T ss_dssp HHHHHHHHHHSCTTEEEEEEEEEETT
T ss_pred HHHHHHHHhCChhcCeECCEEEEeCC
Confidence 99999999999999999986 44444
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.6e-45 Score=304.41 Aligned_cols=221 Identities=20% Similarity=0.279 Sum_probs=198.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.++.||++|||||++|||+++|++|+++|++ |++.+|+.++++++.+.+.+.+.+++++.||++|+++++++++.+.+
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~--V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSK--LVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKA 80 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999999998 99999999999888877777788999999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
++|++|++|||||... .....+.+.+.|++++++|+.|++++++.+.|.|.+++.| +||++||..+.
T Consensus 81 ~~g~idilinnag~~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G------~Iv~isS~~~~ 147 (244)
T d1yb1a_ 81 EIGDVSILVNNAGVVY-------TSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHG------HIVTVASAAGH 147 (244)
T ss_dssp HTCCCSEEEECCCCCC-------CCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE------EEEEECCCC-C
T ss_pred HcCCCceeEeeccccc-------cccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCc------eEEEeecchhc
Confidence 9999999999999985 5667788889999999999999999999999999998876 99999999998
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCC-CCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHh
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKK-DPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIIN 262 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~-~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 262 (282)
.+ .+++..|++||+|+.+|+++|+.|+++++ .||+|++|+||+++|++.+.... +.....+|+++|+.+...+.
T Consensus 148 ~~---~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~~~--~~~~~~~pe~va~~i~~~~~ 222 (244)
T d1yb1a_ 148 VS---VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPST--SLGPTLEPEEVVNRLMHGIL 222 (244)
T ss_dssp CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCTHH--HHCCCCCHHHHHHHHHHHHH
T ss_pred CC---CCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCcCc--cccCCCCHHHHHHHHHHHHh
Confidence 77 67789999999999999999999998753 37999999999999998775332 23455689999999988776
Q ss_pred hc
Q 023441 263 NI 264 (282)
Q Consensus 263 ~~ 264 (282)
..
T Consensus 223 ~~ 224 (244)
T d1yb1a_ 223 TE 224 (244)
T ss_dssp TT
T ss_pred cC
Confidence 54
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=100.00 E-value=3.5e-44 Score=302.42 Aligned_cols=229 Identities=21% Similarity=0.259 Sum_probs=194.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC-CCceeEEEeeCC-ChhHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-PERLDVLQLDLT-VESTIEASAKSI 101 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~-~~~v~~~~~Dls-~~~~~~~~~~~~ 101 (282)
|+++||++|||||++|||+++|++|+++|++ |++++|+.++.+++.++.... +.++.++.+|++ +.++++++++++
T Consensus 1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~--vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 78 (254)
T d1sbya1 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLK--NFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKI 78 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCCS--EEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCCE--EEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHH
Confidence 6899999999999999999999999999999 888888887766555544433 348999999998 667899999999
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.+++|+||+||||||... .+.|++.+++|+.|++++++.+.|.|.+++.+ ..++||++||..
T Consensus 79 ~~~~g~iDilvnnAG~~~---------------~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~---~~g~Ii~isS~~ 140 (254)
T d1sbya1 79 FDQLKTVDILINGAGILD---------------DHQIERTIAINFTGLVNTTTAILDFWDKRKGG---PGGIIANICSVT 140 (254)
T ss_dssp HHHHSCCCEEEECCCCCC---------------TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTC---CCEEEEEECCGG
T ss_pred HHHcCCCCEEEeCCCCCC---------------HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccC---CCceEEEEechh
Confidence 999999999999999753 46799999999999999999999999876432 235999999999
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCC----------CCCCCCChH
Q 023441 182 GSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNV----------PEGKLFTKE 251 (282)
Q Consensus 182 ~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~----------~~~~~~~~~ 251 (282)
+..+ .+++..|++||+|+.+|+++|+.|++++ +||||+|+||+++|++.+...... ......+||
T Consensus 141 ~~~~---~~~~~~Y~asKaal~~~t~~la~el~~~--gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 215 (254)
T d1sbya1 141 GFNA---IHQVPVYSASKAAVVSFTNSLAKLAPIT--GVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSE 215 (254)
T ss_dssp GTSC---CTTSHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTSCCEEHH
T ss_pred hccC---CCCCHHHHHHHHHHHHHHHHHHhhcccc--CeEEEEEEeCCCcCccccccccchhHHHHHHhccccCCCCCHH
Confidence 9877 7788999999999999999999999999 899999999999999755432211 122345799
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++|+.++..++. ..||+.+.+|||++
T Consensus 216 ~va~~~~~~~~~---~~tG~vi~vdgG~l 241 (254)
T d1sbya1 216 QCGQNFVKAIEA---NKNGAIWKLDLGTL 241 (254)
T ss_dssp HHHHHHHHHHHH---CCTTCEEEEETTEE
T ss_pred HHHHHHHHhhhC---CCCCCEEEECCCEe
Confidence 999998887764 35999999999863
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=100.00 E-value=2.6e-43 Score=303.78 Aligned_cols=243 Identities=16% Similarity=0.241 Sum_probs=208.6
Q ss_pred ccccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccc-cccccCCCceeEEEeeCCChhHHHH
Q 023441 18 SSASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL-DLKNRFPERLDVLQLDLTVESTIEA 96 (282)
Q Consensus 18 ~~~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~-~~~~~~~~~v~~~~~Dls~~~~~~~ 96 (282)
.+++.+.+++||++|||||++|||+++|++|+++|++ |++++|+.+++++.. ++..+.+.++.+++||+++.+++++
T Consensus 15 ~~~~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~--Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~ 92 (294)
T d1w6ua_ 15 KAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQ--CVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQN 92 (294)
T ss_dssp SCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHH
T ss_pred ccCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE--EEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHH
Confidence 3445567999999999999999999999999999988 999999998877644 4445567789999999999999999
Q ss_pred HHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEE
Q 023441 97 SAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVAN 176 (282)
Q Consensus 97 ~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~ 176 (282)
+++.+.++++++|++|||+|... ..+..+.+.+++...+.+|+.+.+.+.+.+.+.+.....+ +.+++
T Consensus 93 ~~~~~~~~~g~iDilvnnAg~~~-------~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-----~~i~~ 160 (294)
T d1w6ua_ 93 TVSELIKVAGHPNIVINNAAGNF-------ISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKG-----AAFLS 160 (294)
T ss_dssp HHHHHHHHTCSCSEEEECCCCCC-------CSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----EEEEE
T ss_pred Hhhhhhhhccccchhhhhhhhcc-------ccccccchhhhhhhheeeecccchhhhhhhhccccccccc-----ccccc
Confidence 99999999999999999999875 5667788889999999999999999998887776654433 47888
Q ss_pred eeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc-----------cCCCCC
Q 023441 177 LSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ-----------RNVPEG 245 (282)
Q Consensus 177 ~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~-----------~~~~~~ 245 (282)
++|..+..+ .++...|+++|+|+.+|+|++|.|++++ |||||+|+||+++|++..... +..|..
T Consensus 161 ~ss~~~~~~---~~~~~~YsasKaal~~ltk~lA~ela~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~pl~ 235 (294)
T d1w6ua_ 161 ITTIYAETG---SGFVVPSASAKAGVEAMSKSLAAEWGKY--GMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCG 235 (294)
T ss_dssp ECCTHHHHC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTS
T ss_pred cccchhhhc---ccccchHHHHHHHHHHHHHHHHHHHhHh--CeEEEEEccCccccchhhhccCCcHHHHHHHhhcCCCC
Confidence 888877766 6778899999999999999999999999 999999999999999865332 235667
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 246 KLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+..+|+|+|+.+.+++++...++||+.+.+|||+
T Consensus 236 R~~~pediA~~v~fL~sd~s~~itG~~i~vDGG~ 269 (294)
T d1w6ua_ 236 RLGTVEELANLAAFLCSDYASWINGAVIKFDGGE 269 (294)
T ss_dssp SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred CCCCHHHHHHHHHHHhCchhcCCCCcEEEECCCh
Confidence 8889999999999999998899999999999985
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=1.9e-42 Score=291.61 Aligned_cols=238 Identities=30% Similarity=0.445 Sum_probs=190.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+.|++|||||++|||+++|++|+++|+.++|++.+|+.++++++.+. .+.++++++||++|+++++++++++.+.++
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~---~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~ 78 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI---KDSRVHVLPLTVTCDKSLDTFVSKVGEIVG 78 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC---CCTTEEEEECCTTCHHHHHHHHHHHHHHHG
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh---hCCceEEEEEecCCHHHHHHHHHHHHHHhC
Confidence 45999999999999999999999999866799999999887654433 356899999999999999999999999876
Q ss_pred C--ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCC-----ccceeEEEEeec
Q 023441 107 S--LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGI-----ERDVAVVANLSA 179 (282)
Q Consensus 107 ~--id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~-----~~~~~~iv~~ss 179 (282)
. ||+||||||+.. +..+..+.+.++|++.+++|+.|++.+++.++|.|++++.+. ....+.++++++
T Consensus 79 ~~~idilinnAG~~~------~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~ 152 (250)
T d1yo6a1 79 SDGLSLLINNAGVLL------SYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISS 152 (250)
T ss_dssp GGCCCEEEECCCCCC------CBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECC
T ss_pred CCCeEEEEEcCcccC------CCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccc
Confidence 4 999999999874 245566778899999999999999999999999997642211 122348888888
Q ss_pred cccccCC----CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHH
Q 023441 180 RVGSIGD----NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQ 255 (282)
Q Consensus 180 ~~~~~~~----~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~ 255 (282)
..+.... .+..+...|++||+|+.+|+++++.|+++. +|+||+|+||+++|+|.... ...+||+.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~aY~aSKaal~~l~~~la~el~~~--gI~v~~i~PG~v~T~m~~~~-------~~~~~e~~a~ 223 (250)
T d1yo6a1 153 GLGSITDNTSGSAQFPVLAYRMSKAAINMFGRTLAVDLKDD--NVLVVNFCPGWVQTNLGGKN-------AALTVEQSTA 223 (250)
T ss_dssp GGGCSTTCCSTTSSSCBHHHHHHHHHHHHHHHHHHHHTGGG--TCEEEEEECCCC--------------------HHHHH
T ss_pred ccccccCCcccccchhHHHHHHHHHHHHHHHHHHHHHhccc--CeEEEEEecCCCCCCCCCCC-------CCCCHHHHHH
Confidence 7665432 122344569999999999999999999988 99999999999999986542 2358899999
Q ss_pred HHHHHHhhcCCCCCCceeecCCcccCC
Q 023441 256 KLLNIINNIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~d~~~~~~ 282 (282)
.++..+.......+|.||.+|++.+||
T Consensus 224 ~~~~~~~~~~~~~sG~f~~~~g~p~~w 250 (250)
T d1yo6a1 224 ELISSFNKLDNSHNGRFFMRNLKPYEF 250 (250)
T ss_dssp HHHHHHTTCCGGGTTCEEETTEEECCC
T ss_pred HHHHHHhcCCCCCCeEEECCCCeeCCC
Confidence 999999887778899999999999999
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.5e-43 Score=292.51 Aligned_cols=226 Identities=25% Similarity=0.322 Sum_probs=196.4
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++||++|||||++|||+++|++|+++|++ |++++|++++++++.+. ..+....+|+.+.+.++ ...+.+
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G~~--Vi~~~r~~~~l~~~~~~-----~~~~~~~~d~~~~~~~~----~~~~~~ 72 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREGAK--VIATDINESKLQELEKY-----PGIQTRVLDVTKKKQID----QFANEV 72 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCE--EEEEESCHHHHGGGGGS-----TTEEEEECCTTCHHHHH----HHHHHC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHhc-----cCCceeeeecccccccc----cccccc
Confidence 89999999999999999999999999988 99999998776654443 35778888888766544 455567
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
+++|+||||+|... ..++.+.+.++|++.+++|+.+++.+++.+.|.|.+++.| +|+++||..+...
T Consensus 73 ~~id~lVn~ag~~~-------~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g------~Ii~isS~~~~~~ 139 (245)
T d2ag5a1 73 ERLDVLFNVAGFVH-------HGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSG------NIINMSSVASSVK 139 (245)
T ss_dssp SCCSEEEECCCCCC-------CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEECCSBTTTB
T ss_pred ccceeEEecccccC-------CCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCc------eeeeeechhhccC
Confidence 89999999999985 6678889999999999999999999999999999988765 9999999877432
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--------------cccCCCCCCCCChH
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--------------FQRNVPEGKLFTKE 251 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--------------~~~~~~~~~~~~~~ 251 (282)
+.+....|+++|+++++|+|+++.|++++ |||||+|+||+++|++.+. .....|..+..+|+
T Consensus 140 --~~~~~~~Y~~sKaal~~l~r~lA~e~~~~--gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~pe 215 (245)
T d2ag5a1 140 --GVVNRCVYSTTKAAVIGLTKSVAADFIQQ--GIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAE 215 (245)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTSSCEEHH
T ss_pred --CccchhHHHHHHHHHHHHHHHHHHHhhhh--CcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCCCCCcCHH
Confidence 26778899999999999999999999999 9999999999999987542 22356677888999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
|+|+.+.+++++...++||+.+.+|||+
T Consensus 216 dva~~v~fL~s~~s~~iTG~~i~VDGG~ 243 (245)
T d2ag5a1 216 EIAMLCVYLASDESAYVTGNPVIIDGGW 243 (245)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred HHHHHHHHHhChhhCCCcCceEEeCCCc
Confidence 9999999999999999999999999997
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-42 Score=295.22 Aligned_cols=230 Identities=21% Similarity=0.268 Sum_probs=194.3
Q ss_pred Cc-EEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 28 GG-VSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 28 gk-~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
|| ++|||||++|||+++|++|+++ |++ |++.+|+.++++++.+.++..+.++.+++||++|.++++++++++.+++
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~--Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGD--VVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSE--EEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCE--EEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 54 5599999999999999999987 776 9999999999988777777777889999999999999999999999999
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
|+||+||||||+.. ..+..+.+.++|+..+++|+.+++.+++.++|.|+++ ++||++||..+..+
T Consensus 80 g~iDiLVnNAGi~~-------~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~--------g~ivnisS~~~~~~ 144 (275)
T d1wmaa1 80 GGLDVLVNNAGIAF-------KVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ--------GRVVNVSSIMSVRA 144 (275)
T ss_dssp SSEEEEEECCCCCC-------CTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE--------EEEEEECCHHHHHH
T ss_pred CCcEEEEEcCCcCC-------CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCcccccccceecc
Confidence 99999999999975 4455566778899999999999999999999999764 39999999776432
Q ss_pred C--------------------------------------CCCCCcccchhhHHHHHHHHHHHHHHhccC--CCCeEEEEE
Q 023441 186 D--------------------------------------NRLGGWHSYRASKAALNQLTKSVSVEFGRK--KDPVICILL 225 (282)
Q Consensus 186 ~--------------------------------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~--~~~i~v~~i 225 (282)
. .+......|++||+++..|++.++++++++ +.+|+||+|
T Consensus 145 ~~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v 224 (275)
T d1wmaa1 145 LKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNAC 224 (275)
T ss_dssp HHTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEE
T ss_pred ccccchhhhhhhcccccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 1 111223569999999999999999998763 348999999
Q ss_pred ecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHh--hcCCCCCCceeecCCcccCC
Q 023441 226 HPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIIN--NIKSHDNGKFFAWDGQEIPW 282 (282)
Q Consensus 226 ~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~g~~~~~d~~~~~~ 282 (282)
+||+++|+|.... ...+|+++|+.++++.. +.....+|+++. |++.+||
T Consensus 225 ~PG~v~T~m~~~~-------~~~~pee~A~~~~~~a~~~~~~~~~~G~~~~-~~~v~~w 275 (275)
T d1wmaa1 225 CPGWVRTDMAGPK-------ATKSPEEGAETPVYLALLPPDAEGPHGQFVS-EKRVEQW 275 (275)
T ss_dssp ECCSBCSTTTCTT-------CSBCHHHHTHHHHHHHSCCTTCCCCCSCEEE-TTEEECC
T ss_pred ecccccCCcccCc-------ccCCHHHHHHHHHHHHcCChhhcCCCeEEEE-CCEEecC
Confidence 9999999986542 23489999999998873 334678999997 8999999
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.4e-42 Score=290.82 Aligned_cols=234 Identities=21% Similarity=0.241 Sum_probs=197.3
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHh---cCCCcEEEEeecCCCccccccccccc--CCCceeEEEeeCCChhHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLE---KNDKGCVIATCRNPNGATGLLDLKNR--FPERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~---~G~~~~vi~~~r~~~~~~~~~~~~~~--~~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
.|+||++|||||++|||+++|++|++ +|++ |++++|++++++++.+++.. .+.++.+++||++++++++++++
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~--Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~ 80 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSV--MLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLS 80 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCE--EEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCE--EEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHH
Confidence 57899999999999999999999997 6877 99999999998886655532 24489999999999999999999
Q ss_pred HHHHH----cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEE
Q 023441 100 SIKEK----YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVA 175 (282)
Q Consensus 100 ~~~~~----~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv 175 (282)
.+.+. ++.+|++|||+|..... +..++.+.+.+.|++.+++|+.+++++++.+.|+|++++. ..++||
T Consensus 81 ~~~~~~~~~~~~~~~lvnnag~~~~~----~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~----~~g~Iv 152 (259)
T d1oaaa_ 81 AVRELPRPEGLQRLLLINNAATLGDV----SKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPG----LSKTVV 152 (259)
T ss_dssp HHHHSCCCTTCCEEEEEECCCCCCCC----SSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTT----CEEEEE
T ss_pred HHHHhhhhccCceEEEEecccccccC----CCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC----Cccccc
Confidence 98773 45799999999986411 2456778889999999999999999999999999987652 124999
Q ss_pred EeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc-------------CC
Q 023441 176 NLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-------------NV 242 (282)
Q Consensus 176 ~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-------------~~ 242 (282)
++||..+..+ .+++..|++||+++.+|+++|+.| .. +||||+|+||+++|++.+.... ..
T Consensus 153 ~isS~~~~~~---~~~~~~Y~asKaal~~lt~~la~e--~~--gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~ 225 (259)
T d1oaaa_ 153 NISSLCALQP---YKGWGLYCAGKAARDMLYQVLAAE--EP--SVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLK 225 (259)
T ss_dssp EECCGGGTSC---CTTCHHHHHHHHHHHHHHHHHHHH--CT--TEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred ccccccccCC---CccchHHHHHHHHHHHHHHHHHhC--CC--CCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHHhcC
Confidence 9999998877 778899999999999999999999 34 8999999999999998653221 12
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCCCceeecC
Q 023441 243 PEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWD 276 (282)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d 276 (282)
+..+..+|+++|+.+++++++ .+++||++|++.
T Consensus 226 ~~~r~~~p~evA~~i~~ll~~-~s~~TG~~idv~ 258 (259)
T d1oaaa_ 226 SDGALVDCGTSAQKLLGLLQK-DTFQSGAHVDFY 258 (259)
T ss_dssp HTTCSBCHHHHHHHHHHHHHH-CCSCTTEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHhhh-ccCCCCCeEEec
Confidence 345677999999999999986 468999999874
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-39 Score=274.45 Aligned_cols=239 Identities=18% Similarity=0.237 Sum_probs=198.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+|+||++|||||++|||+++|++|+++|++ |++++|+.+++++..+.+ +.+...+.+|+.+.+.+++....+..
T Consensus 1 ~slkGKvalITGas~GIG~aia~~la~~G~~--V~~~~r~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (248)
T d2o23a1 1 RSVKGLVAVITGGASGLGLATAERLVGQGAS--AVLLDLPNSGGEAQAKKL---GNNCVFAPADVTSEKDVQTALALAKG 75 (248)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECTTSSHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEeCChHHHHHHHHHh---CCCccccccccccccccccccccccc
Confidence 3799999999999999999999999999998 999999998877655444 46889999999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++.+|.+++|++........ ...+..+.+.+.|++.+++|+.+++++++++.|.|..+........++||++||..+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~ 154 (248)
T d2o23a1 76 KFGRVDVAVNCAGIAVASKTY-NLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAF 154 (248)
T ss_dssp HHSCCCEEEECCCCCCCCCSE-ETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH
T ss_pred ccccccccccccccccCCCcc-cccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhc
Confidence 999999999999876522111 1234566778899999999999999999999999876533333334699999999988
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--------CCCC-CCCCChHHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR--------NVPE-GKLFTKEFSV 254 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~~~~-~~~~~~~~~a 254 (282)
.+ .+++..|+++|+|+++|+|+|+.|++++ +||||+|+||+++|++.+.+.+ ..|. .++.+|+|+|
T Consensus 155 ~~---~~~~~~Y~asKaal~~lt~~la~e~~~~--gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~~R~g~peevA 229 (248)
T d2o23a1 155 EG---QVGQAAYSASKGGIVGMTLPIARDLAPI--GIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPFPSRLGDPAEYA 229 (248)
T ss_dssp HC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCCC----------CHHHHTCSSSCSCBCHHHHH
T ss_pred cC---CCCchHHHHHHHHHHHHHHHHHHHhccc--CcceeeeccCceecchhhcCCHHHHHHHHhcCCCCCCCcCHHHHH
Confidence 77 6788999999999999999999999999 9999999999999998765332 2333 5677999999
Q ss_pred HHHHHHHhhcCCCCCCceeec
Q 023441 255 QKLLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~g~~~~~ 275 (282)
+.+.++++ .+++||+.+.+
T Consensus 230 ~~v~fL~s--~~~itGq~I~v 248 (248)
T d2o23a1 230 HLVQAIIE--NPFLNGEVIRL 248 (248)
T ss_dssp HHHHHHHH--CTTCCSCEEEE
T ss_pred HHHHHHHh--CCCCCceEeEC
Confidence 99999986 47899998863
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.9e-41 Score=285.90 Aligned_cols=218 Identities=26% Similarity=0.296 Sum_probs=179.7
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcE-EEEeecCCCcccccc---cccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGC-VIATCRNPNGATGLL---DLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~-vi~~~r~~~~~~~~~---~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.|++|||||++|||+++|++|+++|+++. |...+|+.+..+.+. +.+...+.++.+++||++|.++++++++++.+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 48899999999999999999999999833 445566655544333 33344567999999999999999999998754
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
+++|++|||+|... ..+..+.+.++|++.+++|+.|++++++.++|.|++++.| +||++||..+.
T Consensus 82 --g~idilvnnag~~~-------~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G------~Iv~isS~~g~ 146 (285)
T d1jtva_ 82 --GRVDVLVCNAGLGL-------LGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSG------RVLVTGSVGGL 146 (285)
T ss_dssp --SCCSEEEECCCCCC-------CSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE------EEEEEEEGGGT
T ss_pred --cchhhhhhcccccc-------cccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCC------ceEEEechhhc
Confidence 78999999999985 6677888999999999999999999999999999988765 99999999998
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCC---------------------
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNV--------------------- 242 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~--------------------- 242 (282)
.+ .+....|++||+|+.+|+++|+.|++++ ||+||+|+||+++|++.+......
T Consensus 147 ~~---~~~~~~Y~asKaal~~l~~~la~El~~~--gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (285)
T d1jtva_ 147 MG---LPFNDVYCASKFALEGLCESLAVLLLPF--GVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAH 221 (285)
T ss_dssp SC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CC---CCCchHHHHHHHHHHHHHHHHHHHhhcc--CcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHHHHH
Confidence 87 7788999999999999999999999999 899999999999999976543210
Q ss_pred ----CCCCCCChHHHHHHHHHHHhhcC
Q 023441 243 ----PEGKLFTKEFSVQKLLNIINNIK 265 (282)
Q Consensus 243 ----~~~~~~~~~~~a~~~~~~~~~~~ 265 (282)
+.....+||++|+.+++++....
T Consensus 222 ~~~~~~~~~~~PeeVA~~v~~~~~~~~ 248 (285)
T d1jtva_ 222 SKQVFREAAQNPEEVAEVFLTALRAPK 248 (285)
T ss_dssp HHHHHHHHCBCHHHHHHHHHHHHHCSS
T ss_pred HhhhhcccCCCHHHHHHHHHHHHhCCC
Confidence 11235589999999999998654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-40 Score=280.47 Aligned_cols=221 Identities=20% Similarity=0.192 Sum_probs=194.9
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccc-cccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL-KNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~-~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
|+||++|||||++|||+++|++|+++|++ |++++|++++++++.+. ....+..+.++.+|+++.+.+....+.+.+.
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~~--Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 89 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGAH--VVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL 89 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988 99999999998876543 4455678999999999999999999999999
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++.+|+++||+|... .....+.+.++|++.+++|+.+++.+++.++|.|++++ | .||++||..+..
T Consensus 90 ~g~~~~li~nag~~~-------~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~-G------~ii~isS~~~~~ 155 (269)
T d1xu9a_ 90 MGGLDMLILNHITNT-------SLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN-G------SIVVVSSLAGKV 155 (269)
T ss_dssp HTSCSEEEECCCCCC-------CCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C------EEEEEEEGGGTS
T ss_pred hCCcccccccccccc-------ccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcC-C------cceEeccchhcC
Confidence 999999999999875 55666778899999999999999999999999997543 3 899999999887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhc
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 264 (282)
+ .++...|++||+|+.+|+++|+.|+++.+.+|+||+|+||+++|++........+.....+||++|+.++..+...
T Consensus 156 ~---~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~~~~~~~~~~~~~~~~~e~~a~~i~~~~~~~ 232 (269)
T d1xu9a_ 156 A---YPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALR 232 (269)
T ss_dssp C---CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHSCGGGGGGCBCHHHHHHHHHHHHHTT
T ss_pred C---CCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcHHHHhccCCccccCCCHHHHHHHHHHHhhcC
Confidence 7 7888999999999999999999999987779999999999999998765554445555668999999988876544
Q ss_pred C
Q 023441 265 K 265 (282)
Q Consensus 265 ~ 265 (282)
.
T Consensus 233 ~ 233 (269)
T d1xu9a_ 233 Q 233 (269)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=3.4e-39 Score=269.27 Aligned_cols=220 Identities=15% Similarity=0.152 Sum_probs=187.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc-
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY- 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~- 105 (282)
+||++|||||++|||+++|++|+++|++ |++++++..+.. .....+.+|.++.++.+++.+.+.+.+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~--V~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWW--VASIDVVENEEA----------SASVIVKMTDSFTEQADQVTAEVGKLLG 68 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCE--EEEEESSCCTTS----------SEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEeCCccccc----------cccceeecccCcHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999999998 888888765432 234556788888888888888887765
Q ss_pred -CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 106 -GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 106 -~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
++||+||||||... ......+.+.+.|++.+++|+.+.+++.+.+.|.|+++ ++||++||..+..
T Consensus 69 ~~~iD~lInnAG~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~--------G~Iv~isS~~~~~ 134 (236)
T d1dhra_ 69 DQKVDAILCVAGGWA------GGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG--------GLLTLAGAKAALD 134 (236)
T ss_dssp TCCEEEEEECCCCCC------CBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE--------EEEEEECCGGGGS
T ss_pred CCCceEEEECCcccc------cccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccc--------cceeEEccHHHcC
Confidence 46999999999753 23445566778999999999999999999999999753 3999999999887
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhhc
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 264 (282)
+ .+++..|++||+|+.+|+++|+.|++....+|+||+|+||+++|++.+...+..+...+.+|+++|+.+.+++++.
T Consensus 135 ~---~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~pe~va~~~~~l~s~~ 211 (236)
T d1dhra_ 135 G---TPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSMPEADFSSWTPLEFLVETFHDWITGN 211 (236)
T ss_dssp C---CTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHHHHSTTSCGGGSEEHHHHHHHHHHHHTTT
T ss_pred C---ccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCcchhhCccchhhcCCCHHHHHHHHHHHhCCC
Confidence 7 7788999999999999999999999854449999999999999999776666666677889999999999999998
Q ss_pred CCCCCCceeec
Q 023441 265 KSHDNGKFFAW 275 (282)
Q Consensus 265 ~~~~~g~~~~~ 275 (282)
...++|.++.+
T Consensus 212 ~~~i~G~~i~v 222 (236)
T d1dhra_ 212 KRPNSGSLIQV 222 (236)
T ss_dssp TCCCTTCEEEE
T ss_pred ccCCCCCeEEE
Confidence 88999987764
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-38 Score=269.42 Aligned_cols=236 Identities=15% Similarity=0.177 Sum_probs=200.4
Q ss_pred ccCcEEEEecCCC--chhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASR--GIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~--giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+||++|||||++ |||+++|+.|+++|++ |++++|+++..+.+.+.... ..+..++.+|+++..++.+.++++.+
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~--V~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAE--LAFTYQNDKLKGRVEEFAAQ-LGSDIVLQCDVAEDASIDTMFAELGK 79 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCE--EEEEESSTTTHHHHHHHHHH-TTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHHhh-cCCcceeecccchHHHHHHHHHHhhh
Confidence 6899999999998 8999999999999998 99999997655444443332 45678889999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.++++|++|||++...... .+.........+.|...+.+|+.+.+.+.+.+.+.+.++ +.|+++||..+.
T Consensus 80 ~~~~~d~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~Ii~iss~~~~ 149 (258)
T d1qsga_ 80 VWPKFDGFVHSIGFAPGDQ--LDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPG--------SALLTLSYLGAE 149 (258)
T ss_dssp TCSSEEEEEECCCCCCGGG--GSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE--------EEEEEEECGGGT
T ss_pred cccccceEEEeeccccccc--ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------cEEEEecchhhc
Confidence 9999999999998874111 112233455667799999999999999999999988653 379999998877
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKEFS 253 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~~ 253 (282)
.+ .+.+..|+++|+++++|+++++.|++++ +||||+|+||+++|++.+... +..|..+..+|||+
T Consensus 150 ~~---~~~~~~Y~~sKaal~~ltr~lA~el~~~--gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~peei 224 (258)
T d1qsga_ 150 RA---IPNYNVMGLAKASLEANVRYMANAMGPE--GVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDV 224 (258)
T ss_dssp SB---CTTTTHHHHHHHHHHHHHHHHHHHHTTT--TEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHH
T ss_pred cC---CCCcHHHHHHHHHHHHHHHHHHHHhCcc--CceeecccccccccccccccchhhhHHHHHHhCCCCCCCcCHHHH
Confidence 66 6777899999999999999999999998 999999999999999876432 23566778899999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
|+.+.+++++..+++||+.+.+|||+
T Consensus 225 a~~v~fL~s~~s~~itG~~i~vDGG~ 250 (258)
T d1qsga_ 225 GNSAAFLCSDLSAGISGEVVHVDGGF 250 (258)
T ss_dssp HHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHhCchhcCccCceEEECcCH
Confidence 99999999998899999999999997
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=4.2e-38 Score=269.43 Aligned_cols=244 Identities=17% Similarity=0.163 Sum_probs=182.0
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC-cccccccccc-cCCCc-----------------eeEEEeeCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN-GATGLLDLKN-RFPER-----------------LDVLQLDLT 89 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~-~~~~~~~~~~-~~~~~-----------------v~~~~~Dls 89 (282)
.++|||||++|||+++|++|+++|++ |++.+|+.+ ..+++.+.+. ..+.. +..+.+|++
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga~--V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~ 80 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGYA--VCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVT 80 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCE--EEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCC
Confidence 58999999999999999999999998 888776554 3333333332 22333 344566799
Q ss_pred ChhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcc-------cccccchhhhhhhhhhhhcHHHHHHHHhhhhhhc
Q 023441 90 VESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPET-------TLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKV 162 (282)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~ 162 (282)
+.++++++++++.+++|+||+||||||.....+...... ...+.....+...+.+|+.+++.+.+.+.+.+..
T Consensus 81 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 160 (284)
T d1e7wa_ 81 LFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAG 160 (284)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhh
Confidence 999999999999999999999999999875222111100 0111223345568999999999999998876543
Q ss_pred CCCCCccceeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc------
Q 023441 163 GGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR------ 236 (282)
Q Consensus 163 ~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~------ 236 (282)
...........|++++|..+..+ .++...|+++|+++.+|+++++.|++++ |||||+|+||++.+....
T Consensus 161 ~~~~~~~~~~~ii~~~s~~~~~~---~~~~~~Y~asKaal~~lt~~lA~el~~~--gIrvN~I~PG~t~~~~~~~~~~~~ 235 (284)
T d1e7wa_ 161 TPAKHRGTNYSIINMVDAMTNQP---LLGYTIYTMAKGALEGLTRSAALELAPL--QIRVNGVGPGLSVLVDDMPPAVWE 235 (284)
T ss_dssp SCGGGSCSCEEEEEECCTTTTSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESSBCCGGGSCHHHHH
T ss_pred hHHHhcCCCCcccccccccccCC---ccceeeeccccccchhhhHHHHHHhCCc--cccccccccccccccccCCHHHHH
Confidence 22111222358999999887766 6778899999999999999999999999 999999999986543211
Q ss_pred ccccCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 237 PFQRNVPE-GKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 237 ~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.+....|. .+..+|+|+|+.+.+++++...++||+.+.+|||+
T Consensus 236 ~~~~~~pl~~R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG~ 279 (284)
T d1e7wa_ 236 GHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGY 279 (284)
T ss_dssp HHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHhCchhcCccCCeEEECcCh
Confidence 22334453 67789999999999999998999999999999997
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.4e-37 Score=259.38 Aligned_cols=219 Identities=15% Similarity=0.138 Sum_probs=182.6
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH--Hc
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE--KY 105 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~--~~ 105 (282)
+++||||||++|||+++|++|+++|++ |++++|++.+.. .....+.+|+.+.++.....+.+.. ++
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~~--V~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGYT--VLNIDLSANDQA----------DSNILVDGNKNWTEQEQSILEQTASSLQG 69 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEE--EEEEESSCCTTS----------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEECCchhcc----------cccceeccccCchhHHHHHHHHHHHHhcC
Confidence 456799999999999999999999988 999999876532 2334456788888887777777766 45
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
++||+||||||... ...+..+.+.+.|+.++++|+.+++.+++.+.|.|+++ ++|+++||..+..+
T Consensus 70 g~iD~linnAG~~~------~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~--------g~Iv~isS~~~~~~ 135 (235)
T d1ooea_ 70 SQVDGVFCVAGGWA------GGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG--------GLLQLTGAAAAMGP 135 (235)
T ss_dssp CCEEEEEECCCCCC------CBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE--------EEEEEECCGGGGSC
T ss_pred CCeeEEEECCcccc------cccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccc--------eEEEEeccHHhcCC
Confidence 88999999999864 12344455567899999999999999999999999753 39999999988876
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccCCCCCCCCChHHHHHHHHHHHhh-c
Q 023441 186 DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINN-I 264 (282)
Q Consensus 186 ~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~ 264 (282)
.+++..|+++|+|+.+|+++|+.|++..+.+|+||+|+||+++|++.+...+..+...+.+|+++++.++.++.. .
T Consensus 136 ---~~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~~~~~~~~~~~~~~~~~~~va~~~~~~l~~~~ 212 (235)
T d1ooea_ 136 ---TPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKWMPNADHSSWTPLSFISEHLLKWTTETS 212 (235)
T ss_dssp ---CTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHHHHSTTCCGGGCBCHHHHHHHHHHHHHCGG
T ss_pred ---cccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcchhhhCcCCccccCCCHHHHHHHHHHHhcCcc
Confidence 778899999999999999999999997666999999999999999987766666667788999999998866654 4
Q ss_pred CCCCCCceeec
Q 023441 265 KSHDNGKFFAW 275 (282)
Q Consensus 265 ~~~~~g~~~~~ 275 (282)
...++|..+.+
T Consensus 213 ~~~~tG~~i~v 223 (235)
T d1ooea_ 213 SRPSSGALLKI 223 (235)
T ss_dssp GCCCTTCEEEE
T ss_pred ccCCCceEEEE
Confidence 57799999887
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=9.5e-37 Score=266.30 Aligned_cols=233 Identities=18% Similarity=0.202 Sum_probs=185.8
Q ss_pred cCcEEEEec--CCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccc------------cccccCCCceeEE--------
Q 023441 27 KGGVSLVQG--ASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL------------DLKNRFPERLDVL-------- 84 (282)
Q Consensus 27 ~gk~vlItG--as~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~------------~~~~~~~~~v~~~-------- 84 (282)
++|++|||| +++|||+++|+.|+++|++ |++.+++........ ....+........
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~--V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVK--IIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDT 78 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCE--EEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSS
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcCCE--EEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehh
Confidence 479999999 5689999999999999998 888877543221100 0000000111222
Q ss_pred ------------EeeCCChhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHH
Q 023441 85 ------------QLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILV 152 (282)
Q Consensus 85 ------------~~Dls~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 152 (282)
.+|+++.++++++++.+.+.||+||+||||+|.... ...++.+.+.+.|+..+++|+.+.+.+
T Consensus 79 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~-----~~~~~~~~~~~~~~~~~~vn~~~~~~~ 153 (329)
T d1uh5a_ 79 ANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKE-----VQKDLLNTSRKGYLDALSKSSYSLISL 153 (329)
T ss_dssp GGGCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTT-----TTSCGGGCCHHHHHHHHHHHTHHHHHH
T ss_pred hcccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccc-----cCCChhhhhhhhhhhhcccchhHHHHH
Confidence 347778999999999999999999999999997641 134677888999999999999999999
Q ss_pred HHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCCC-cccchhhHHHHHHHHHHHHHHhcc-CCCCeEEEEEecccc
Q 023441 153 IKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGG-WHSYRASKAALNQLTKSVSVEFGR-KKDPVICILLHPGTV 230 (282)
Q Consensus 153 ~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~-~~~Y~~sKa~~~~l~~~la~e~~~-~~~~i~v~~i~Pg~v 230 (282)
+|++.|.|+++ ++||++||..+..+ .++ ...|+++|+++++|+|+|+.|+++ + |||||+|+||++
T Consensus 154 ~k~~~~~m~~~--------GsIv~iss~~~~~~---~p~y~~~y~asKaal~~ltr~lA~Ela~~~--gIRVNaI~PG~i 220 (329)
T d1uh5a_ 154 CKYFVNIMKPQ--------SSIISLTYHASQKV---VPGYGGGMSSAKAALESDTRVLAYHLGRNY--NIRINTISAGPL 220 (329)
T ss_dssp HHHHGGGEEEE--------EEEEEEECGGGTSC---CTTCTTTHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEEEECCC
T ss_pred HHHHHhhcccc--------cccccceeehhccc---ccccchhhhhhhccccccchhhHHHHhccc--CcEEEEEecCcc
Confidence 99999999754 38999999888766 443 457999999999999999999986 6 899999999999
Q ss_pred cCCCCcc-----------------------------------------------------cccCCCCCCCCChHHHHHHH
Q 023441 231 DTDLSRP-----------------------------------------------------FQRNVPEGKLFTKEFSVQKL 257 (282)
Q Consensus 231 ~t~~~~~-----------------------------------------------------~~~~~~~~~~~~~~~~a~~~ 257 (282)
+|+..+. +.+..|..+..+|+|+|..+
T Consensus 221 ~T~a~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~~~pedvA~~v 300 (329)
T d1uh5a_ 221 KSRAATAINKLNNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPLRQKLLSTDIGSVA 300 (329)
T ss_dssp CCTTGGGCC------------------------------------------CHHHHHHHHHHHHSSSCSCCCHHHHHHHH
T ss_pred cchhhhcccchhhhhhhhhhhhhccccccccccccccccccchhhhhhhcccchHHHHHHHhccCCCCCCcCHHHHHHHH
Confidence 9943221 11224667888999999999
Q ss_pred HHHHhhcCCCCCCceeecCCcc
Q 023441 258 LNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 258 ~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.+++++..+++||+.+.+|||.
T Consensus 301 ~fLaSd~s~~iTGq~i~VDGG~ 322 (329)
T d1uh5a_ 301 SFLLSRESRAITGQTIYVDNGL 322 (329)
T ss_dssp HHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHhCchhCCccCCeEEECCCc
Confidence 9999999999999999999996
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=7.6e-37 Score=260.43 Aligned_cols=235 Identities=21% Similarity=0.245 Sum_probs=181.6
Q ss_pred ccCcEEEEecCCC--chhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASR--GIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas~--giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+||++|||||+| |||+++|++|+++|++ |++++|++...+.+.++. +.+....++++|++++++++++++++.+
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~--V~i~~r~~~~~~~~~~l~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGAT--LAFTYLNESLEKRVRPIA-QELNSPYVYELDVSKEEHFKSLYNSVKK 79 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCE--EEEEESSTTTHHHHHHHH-HHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCE--EEEEeCCHHHHHHHHHHH-hhCCceeEeeecccchhhHHHHHHHHHH
Confidence 7899999999765 9999999999999998 999999965433333333 3356788899999999999999999999
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
.+|++|++|||+|...... ...+..+.....+...+.++..+.+...+.+.+.... + ..|+++|+....
T Consensus 80 ~~g~id~lV~nag~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~i~~~s~~~~~ 148 (274)
T d2pd4a1 80 DLGSLDFIVHSVAFAPKEA---LEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN---G-----ASVLTLSYLGST 148 (274)
T ss_dssp HTSCEEEEEECCCCCCGGG---GSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE---E-----EEEEEEECGGGT
T ss_pred HcCCCCeEEeecccccccc---cccccccccchhhhhhhcccccccccccccccccccc---C-----cceeeecccccc
Confidence 9999999999999875111 0112222333344444445555555555555444322 1 356666665554
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc----------cCCCCCCCCChHHH
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ----------RNVPEGKLFTKEFS 253 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~~ 253 (282)
.+ .+....|+++|+++.+++++++.|++++ +||||+|+||++.|++..... ...+..+..+|+|+
T Consensus 149 ~~---~~~~~~y~asK~al~~ltr~lA~e~~~~--GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedI 223 (274)
T d2pd4a1 149 KY---MAHYNVMGLAKAALESAVRYLAVDLGKH--HIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEV 223 (274)
T ss_dssp SB---CTTCHHHHHHHHHHHHHHHHHHHHHHTT--TCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHH
T ss_pred cc---cccchhhhHHHHHHHHHHHhhHHHhcCc--CceecccccCcccCccccccCchHHHHHHHhhhhhccCCcCHHHH
Confidence 44 5667889999999999999999999999 899999999999999875432 23556788899999
Q ss_pred HHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 254 VQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 254 a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
|+.+.+++++...++||+.|.+|||+
T Consensus 224 A~~v~fL~S~~s~~itG~~i~vDGG~ 249 (274)
T d2pd4a1 224 GNAGMYLLSSLSSGVSGEVHFVDAGY 249 (274)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHhChhhCCCcCceEEECCCh
Confidence 99999999998999999999999997
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=1.7e-36 Score=261.05 Aligned_cols=238 Identities=16% Similarity=0.208 Sum_probs=186.3
Q ss_pred cccccCcEEEEecCCC--chhHHHHHHHHhcCCCcEEEEeecCCCccccc---------ccccccCCC--c-eeEEEee-
Q 023441 23 SVKWKGGVSLVQGASR--GIGLEFAKQLLEKNDKGCVIATCRNPNGATGL---------LDLKNRFPE--R-LDVLQLD- 87 (282)
Q Consensus 23 ~~~~~gk~vlItGas~--giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~---------~~~~~~~~~--~-v~~~~~D- 87 (282)
+|+|+||++|||||++ |||+++|++|+++|++ |++++|+....... .......+. . -....+|
T Consensus 3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~--Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (297)
T d1d7oa_ 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAE--ILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDA 80 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCE--EEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECT
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCE--EEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 6899999999999875 9999999999999998 89988864321100 000000001 1 1222333
Q ss_pred -------------------CCChhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcH
Q 023441 88 -------------------LTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVG 148 (282)
Q Consensus 88 -------------------ls~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 148 (282)
.++..+++++++++.++||+||+||||||.... ...++.+.+.++|++.+++|+.+
T Consensus 81 ~~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~-----~~~~~~~~~~~~~~~~~~vn~~~ 155 (297)
T d1d7oa_ 81 VFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPE-----VSKPLLETSRKGYLAAISASSYS 155 (297)
T ss_dssp TCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTT-----TTSCGGGCCHHHHHHHHHHHTHH
T ss_pred hccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccc-----cccchhhhhcccccccccchhhh
Confidence 366778899999999999999999999998631 13567788999999999999999
Q ss_pred HHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhc-cCCCCeEEEEEec
Q 023441 149 PILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFG-RKKDPVICILLHP 227 (282)
Q Consensus 149 ~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~-~~~~~i~v~~i~P 227 (282)
.+.+++.+.+.+.+++ .++.+++....... .+....|+++|+++..+++.++.+++ ++ +||||+|+|
T Consensus 156 ~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~--~~~~~~y~~aKaa~~~l~~~~a~e~~~~~--gIrvN~I~P 223 (297)
T d1d7oa_ 156 FVSLLSHFLPIMNPGG--------ASISLTYIASERII--PGYGGGMSSAKAALESDTRVLAFEAGRKQ--NIRVNTISA 223 (297)
T ss_dssp HHHHHHHHGGGEEEEE--------EEEEEECGGGTSCC--TTCTTTHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEEEE
T ss_pred hhhhhhHHHHHhhcCC--------cceeeeehhhcccc--cccccceecccccccccccccchhccccc--eEEeccccc
Confidence 9999999999887654 44455554433221 35567899999999999999999996 56 899999999
Q ss_pred ccccCCCCccc----------ccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 228 GTVDTDLSRPF----------QRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 228 g~v~t~~~~~~----------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
|+++|++.+.. ....|..+..+|+|+|+.+.+++++...++||+.+.+|||+
T Consensus 224 G~i~T~~~~~~~~~~~~~~~~~~~~PlgR~~~peevA~~v~fL~S~~a~~itGq~i~vDGG~ 285 (297)
T d1d7oa_ 224 GPLGSRAAKAIGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATIYVDNGL 285 (297)
T ss_dssp CCCBCCCSSCCSHHHHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred ccccchhhhhccCCHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCchhcCCcCceEEECcCH
Confidence 99999987642 22356678889999999999999999999999999999996
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.6e-36 Score=251.28 Aligned_cols=228 Identities=22% Similarity=0.235 Sum_probs=185.3
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
+|++|||||++|||+++|++|+++|++ |++++|+++. .+...+++|+++......+.....+.. .
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~--V~i~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~~~~-~ 65 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYR--VVVLDLRREG------------EDLIYVEGDVTREEDVRRAVARAQEEA-P 65 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCE--EEEEESSCCS------------SSSEEEECCTTCHHHHHHHHHHHHHHS-C
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCccc------------ccceEeeccccchhhhHHHHHhhhccc-c
Confidence 599999999999999999999999998 9999998654 346678899999999999988887775 4
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
.+.++++++...... ........+.+.|++.+++|+.+.+.+++.+.+.+...........++||++||..+..+
T Consensus 66 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~-- 140 (241)
T d1uaya_ 66 LFAVVSAAGVGLAEK---ILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG-- 140 (241)
T ss_dssp EEEEEECCCCCCCCC---SBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC--
T ss_pred ccchhhhhhcccccc---ccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccC--
Confidence 566667766543111 123344556778999999999999999999998855443222233459999999998877
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------cCCCC-CCCCChHHHHHHHH
Q 023441 188 RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------RNVPE-GKLFTKEFSVQKLL 258 (282)
Q Consensus 188 ~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------~~~~~-~~~~~~~~~a~~~~ 258 (282)
.++...|+++|+|+.+|+|+++.|++++ |||||+|+||+++|++..... ...+. .+..+|+|+|+.+.
T Consensus 141 -~~~~~~Y~asKaal~~lt~~lA~ela~~--gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~R~g~pedvA~~v~ 217 (241)
T d1uaya_ 141 -QIGQAAYAASKGGVVALTLPAARELAGW--GIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPFPPRLGRPEEYAALVL 217 (241)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCSSCSCCCHHHHHHHHH
T ss_pred -CCCchhhHHHHHHHHHHHHHHHHHHhhc--CCceeeecCCcccccccchhhhhHHHHHHhcCCCCCCCcCHHHHHHHHH
Confidence 6788999999999999999999999999 999999999999999765322 22333 56779999999999
Q ss_pred HHHhhcCCCCCCceeecCCccc
Q 023441 259 NIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 259 ~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
++++ .+++||+.+.+|||+.
T Consensus 218 fL~s--~~~iTG~~i~VDGG~~ 237 (241)
T d1uaya_ 218 HILE--NPMLNGEVVRLDGALR 237 (241)
T ss_dssp HHHH--CTTCCSCEEEESTTCC
T ss_pred HHHh--CCCCCCCEEEECCccc
Confidence 9997 4689999999999973
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=2.4e-35 Score=249.77 Aligned_cols=244 Identities=20% Similarity=0.286 Sum_probs=186.3
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc-cccc-cccccCCCceeEEEeeCCC----hhHHHHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA-TGLL-DLKNRFPERLDVLQLDLTV----ESTIEASAKSIK 102 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~-~~~~-~~~~~~~~~v~~~~~Dls~----~~~~~~~~~~~~ 102 (282)
.|+|||||++|||+++|++|+++|++ |++++|+.++. +++. +.....+.+..++++|+.+ .+.++++++.+.
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~~--Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGFR--VVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSF 79 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCE--EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHH
Confidence 58999999999999999999999998 99999997654 3433 3444546678888877755 456778888899
Q ss_pred HHcCCccEEEECcccCCCCCCCCC----cccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEee
Q 023441 103 EKYGSLNLLINASGILSIPNVLQP----ETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLS 178 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~s 178 (282)
+++|++|+||||||+......... .....+.....+...+..|..+.+...+...+.+....... .....+++++
T Consensus 80 ~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 158 (266)
T d1mxha_ 80 RAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWR-SRNLSVVNLC 158 (266)
T ss_dssp HHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC--------CCCEEEEEEC
T ss_pred HHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccc-cccccchhhh
Confidence 999999999999998752221111 11123334456778889999999999988888776543221 1234778888
Q ss_pred ccccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc------cccCCCCCC-CCChH
Q 023441 179 ARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------FQRNVPEGK-LFTKE 251 (282)
Q Consensus 179 s~~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~------~~~~~~~~~-~~~~~ 251 (282)
+..+... .+++..|++||+++++|+++++.|++++ |||||+|+||+++|++... +....|..+ ..+||
T Consensus 159 ~~~~~~~---~~~~~~Y~asKaal~~lt~~lA~e~~~~--gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~pl~r~~~~pe 233 (266)
T d1mxha_ 159 DAMTDLP---LPGFCVYTMAKHALGGLTRAAALELAPR--HIRVNAVAPGLSLLPPAMPQETQEEYRRKVPLGQSEASAA 233 (266)
T ss_dssp CGGGGSC---CTTCHHHHHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESSBSCCSSSCHHHHHHHHTTCTTTSCCBCHH
T ss_pred hcccccc---CcchhhhhhhHHHHhhhHHHHHHHhCcc--CcEEEEeccCcEeccccCCHHHHHHHHhcCCCCCCCCCHH
Confidence 8776655 7788999999999999999999999998 8999999999999986542 233445433 36999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 252 FSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
|+|..+.+++++...++||+.|.+|||+.
T Consensus 234 eva~~v~fL~s~~s~~itG~~i~vDGG~~ 262 (266)
T d1mxha_ 234 QIADAIAFLVSKDAGYITGTTLKVDGGLI 262 (266)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHhCchhCCccCCeEEECccHh
Confidence 99999999999988999999999999975
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=100.00 E-value=3.3e-35 Score=249.30 Aligned_cols=235 Identities=16% Similarity=0.206 Sum_probs=189.8
Q ss_pred ccCcEEEEecC--CCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGA--SRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGa--s~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|+||++||||| ++|||+++|++|+++|++ |++++|+.++..+ +..++.+.+...++||+++++++.++++.+.+
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~--Vil~~~~~~~~~~--~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~ 79 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQ--LVLTGFDRLRLIQ--RITDRLPAKAPLLELDVQNEEHLASLAGRVTE 79 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCE--EEEEECSCHHHHH--HHHTTSSSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCE--EEEEeCChHHHHH--HHHHHcCCceeeEeeecccccccccccchhhh
Confidence 68999999994 579999999999999998 9999998876532 22233456788999999999999999999987
Q ss_pred Hc---CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 104 KY---GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 104 ~~---~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
.+ +++|+++||+|...... ....++.+.+.+.+...+.+|+.+.+...+...+..... .+++++|.
T Consensus 80 ~~~~~~~ld~~i~~ag~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~s~ 148 (268)
T d2h7ma1 80 AIGAGNKLDGVVHSIGFMPQTG--MGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPG---------GSIVGMDF 148 (268)
T ss_dssp HHCTTCCEEEEEECCCCCCGGG--STTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE---------EEEEEEEC
T ss_pred ccccCCCcceeeecccccCccc--cccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccc---------cccccccc
Confidence 65 67999999999764211 123455677788999999999999999999988776542 34444554
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc--------------------c
Q 023441 181 VGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------------------R 240 (282)
Q Consensus 181 ~~~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------------------~ 240 (282)
....+ .+.+..|+++|+++.+|+++++.|++++ +||||+|+||++.|++.+.+. .
T Consensus 149 ~~~~~---~p~~~~y~~sK~a~~~ltr~lA~e~~~~--gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (268)
T d2h7ma1 149 DPSRA---MPAYNWMTVAKSALESVNRFVAREAGKY--GVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQ 223 (268)
T ss_dssp CCSSC---CTTTHHHHHHHHHHHHHHHHHHHHHHTT--TCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHH
T ss_pred ccccc---Ccccchhhccccchhhccccchhhhhcc--CCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHh
Confidence 44444 6778899999999999999999999999 899999999999998653211 1
Q ss_pred CCCCCC-CCChHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 241 NVPEGK-LFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 241 ~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
+.|..+ ..+|+|+|+.+.+++++...++||+.+.+|||..
T Consensus 224 ~~pl~rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vDGG~~ 264 (268)
T d2h7ma1 224 RAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAH 264 (268)
T ss_dssp HCTTCCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTGG
T ss_pred cCCCCCCCCCHHHHHHHHHHHhCchhcCccCCEEEECcCcc
Confidence 234333 6789999999999999989999999999999975
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=3.7e-32 Score=228.95 Aligned_cols=210 Identities=19% Similarity=0.216 Sum_probs=160.7
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc-CC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY-GS 107 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~-~~ 107 (282)
|++|||||++|||+++|++|+++|++ |++++|+..+. .+|+++.+..+.....+..+. ++
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga~--V~~~~~~~~~~-----------------~~d~~~~~~~~~~~~~~~~~~~~~ 62 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGHQ--IVGIDIRDAEV-----------------IADLSTAEGRKQAIADVLAKCSKG 62 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSSSSE-----------------ECCTTSHHHHHHHHHHHHTTCTTC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCE--EEEEECChHHH-----------------HHHhcCHHHHHHHHHHHHHHhCCC
Confidence 79999999999999999999999998 99999876542 368899988888877666555 57
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC--
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG-- 185 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~-- 185 (282)
+|++++|||+.. . .+.+.....+|+.+...+.+...+.+.+...+ .+.++++.....-
T Consensus 63 id~lv~~Ag~~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 122 (257)
T d1fjha_ 63 MDGLVLCAGLGP-------Q-------TKVLGNVVSVNYFGATELMDAFLPALKKGHQP------AAVVISSVASAHLAF 122 (257)
T ss_dssp CSEEEECCCCCT-------T-------CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSC------EEEEECCGGGGSSCG
T ss_pred CcEEEEcCCCCC-------c-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC------cceeeeeccccchhh
Confidence 999999999863 1 23466778899999999999988887766543 4444444322110
Q ss_pred -----------------------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc--
Q 023441 186 -----------------------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR-- 240 (282)
Q Consensus 186 -----------------------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-- 240 (282)
..+.++..+|++||+++++|+|+++.|++++ |||||+|+||+++|++.+....
T Consensus 123 ~~~~~~~~~~~g~~~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~--gIrVN~I~PG~i~T~~~~~~~~~~ 200 (257)
T d1fjha_ 123 DKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEA--GVRLNTIAPGATETPLLQAGLQDP 200 (257)
T ss_dssp GGCTTHHHHHHTCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHT--TCEEEEEEECC-------------
T ss_pred hhhhhhhhccCCcEEEEeeehhccCCCcchHHHHHHhhhhhccccccccccccc--cccccccccCCcCChhHHhhcCCH
Confidence 0012234579999999999999999999999 8999999999999998653211
Q ss_pred ---------CCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 241 ---------NVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 241 ---------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
..|..+..+|+|+|+.+.+++++...++||+.+.+|||+
T Consensus 201 ~~~~~~~~~~~PlgR~g~p~eva~~v~fL~S~~s~~itG~~i~vDGG~ 248 (257)
T d1fjha_ 201 RYGESIAKFVPPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGGI 248 (257)
T ss_dssp --------CCCSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred HHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCchhCCccCceEEeCCCc
Confidence 135677889999999999999999999999999999996
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.97 E-value=1.4e-30 Score=219.64 Aligned_cols=209 Identities=16% Similarity=0.195 Sum_probs=164.8
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc---ccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT---GLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~---~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||||||++|||+++|++|+++|+. +|++++|+....+ +..+.+...+.++.+++||++|.++++++++.+.+.
T Consensus 9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~-~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~ 87 (259)
T d2fr1a1 9 TGTVLVTGGTGGVGGQIARWLARRGAP-HLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD 87 (259)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHTCS-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred cCEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccccc
Confidence 579999999999999999999999985 5888999754433 344444556789999999999999999999988665
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
+++|+++||+|... ..++.+.+.++|+..+++|+.+.+++.+.+.+ .+.+ +||++||..+..
T Consensus 88 -~~i~~vv~~ag~~~-------~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~----~~~~------~iv~~SS~a~~~ 149 (259)
T d2fr1a1 88 -VPLSAVFHAAATLD-------DGTVDTLTGERIERASRAKVLGARNLHELTRE----LDLT------AFVLFSSFASAF 149 (259)
T ss_dssp -SCEEEEEECCCCCC-------CCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTT----SCCS------EEEEEEEHHHHT
T ss_pred -cccccccccccccc-------ccccccccHHHHHHHhhhhccchhHHHHHhhc----cCCc------eEeeecchhhcc
Confidence 58999999999986 66788889999999999999999998887544 2232 899999999988
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC-CCcc-cccCCCC--CCCCChHHHHHHHHHH
Q 023441 185 GDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD-LSRP-FQRNVPE--GKLFTKEFSVQKLLNI 260 (282)
Q Consensus 185 ~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~-~~~~-~~~~~~~--~~~~~~~~~a~~~~~~ 260 (282)
+ .++...|+++|++++.|++.++.+ ++++++|+||.+.+. +... ....... ...++|+++++.+..+
T Consensus 150 g---~~~~~~YaAaka~l~~la~~~~~~------Gi~v~~I~pg~~~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~l~~~ 220 (259)
T d2fr1a1 150 G---APGLGGYAPGNAYLDGLAQQRRSD------GLPATAVAWGTWAGSGMAEGPVADRFRRHGVIEMPPETACRALQNA 220 (259)
T ss_dssp C---CTTCTTTHHHHHHHHHHHHHHHHT------TCCCEEEEECCBC------------CTTTTEECBCHHHHHHHHHHH
T ss_pred C---CcccHHHHHHHHhHHHHHHHHHhC------CCCEEECCCCcccCCccccchHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 8 677889999999999888776654 899999999987544 3222 1111111 1346899999999888
Q ss_pred Hhhc
Q 023441 261 INNI 264 (282)
Q Consensus 261 ~~~~ 264 (282)
+...
T Consensus 221 l~~~ 224 (259)
T d2fr1a1 221 LDRA 224 (259)
T ss_dssp HHTT
T ss_pred HhCC
Confidence 8754
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=5.1e-18 Score=148.38 Aligned_cols=206 Identities=13% Similarity=0.052 Sum_probs=140.1
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC-----cccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN-----GATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~-----~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.|+||||||||.||..++++|+++|++ |+.++|... +.+.+.........++.++++|++|.+++++++...
T Consensus 1 ~K~vLITGatGfiGs~lv~~Ll~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 77 (357)
T d1db3a_ 1 SKVALITGVTGQDGSYLAEFLLEKGYE--VHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV- 77 (357)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE--EEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH-
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCcCE--EEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhcc-
Confidence 389999999999999999999999987 999998543 222222322233458999999999999999998875
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc-
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV- 181 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~- 181 (282)
.+|+++|+|+.... .. ..++....+++|+.++.++++++...-.+.. .++|++||..
T Consensus 78 ----~~d~v~h~aa~~~~------~~-----~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~-------~r~i~~SS~~v 135 (357)
T d1db3a_ 78 ----QPDEVYNLGAMSHV------AV-----SFESPEYTADVDAMGTLRLLEAIRFLGLEKK-------TRFYQASTSEL 135 (357)
T ss_dssp ----CCSEEEECCCCCTT------TT-----TTSCHHHHHHHHTHHHHHHHHHHHHTTCTTT-------CEEEEEEEGGG
T ss_pred ----CCCEEEEeeccccc------ch-----hhhCHHHHHHHHHHHHHHHHHHHHHhCCCCC-------cEEEEEEchhh
Confidence 68999999998641 11 1233456789999999999998865432221 2788888754
Q ss_pred -cccC------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc----------------
Q 023441 182 -GSIG------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---------------- 238 (282)
Q Consensus 182 -~~~~------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---------------- 238 (282)
|... +.+..+...|+.+|.+.+.+++.+++.+ ++.+..+.|+.+..|.....
T Consensus 136 YG~~~~~~~~E~~~~~P~~~Y~~sK~~~E~~~~~~~~~~-----~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~ 210 (357)
T d1db3a_ 136 YGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESY-----GMYACNGILFNHESPRRGETFVTRKITRAIANIAQG 210 (357)
T ss_dssp GTTCCSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTT
T ss_pred hCCCCCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-----CCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhC
Confidence 2211 1122345679999999999999998876 56677778877766532100
Q ss_pred cc-------CCCCCCCCChHHHHHHHHHHHhh
Q 023441 239 QR-------NVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 239 ~~-------~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
.+ ..........+|++++++.++..
T Consensus 211 ~~~~~~~g~~~~~r~~~~v~D~~~a~~~~~~~ 242 (357)
T d1db3a_ 211 LESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQ 242 (357)
T ss_dssp SCCCEEESCTTCEECCEEHHHHHHHHHHTTSS
T ss_pred CCceEEECCCCeeecceeechHHHHHHHHHhC
Confidence 00 01112456789999998887753
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.77 E-value=9.5e-21 Score=151.66 Aligned_cols=158 Identities=13% Similarity=0.105 Sum_probs=113.4
Q ss_pred ccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHH
Q 023441 20 ASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 20 ~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
+....+|+||+++||||++|||+++|++|+++|++ |++++|+.++.+++.+.+.. ..++.+..+|++|.+++++++
T Consensus 15 ~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~--V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~- 90 (191)
T d1luaa1 15 KAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAE--VVLCGRKLDKAQAAADSVNK-RFKVNVTAAETADDASRAEAV- 90 (191)
T ss_dssp HHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHHHHH-HHTCCCEEEECCSHHHHHHHT-
T ss_pred HHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccc--hhhcccchHHHHHHHHHHHh-ccchhhhhhhcccHHHHHHHh-
Confidence 44568999999999999999999999999999988 99999999888776555433 135677899999999887764
Q ss_pred HHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeec
Q 023441 100 SIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSA 179 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss 179 (282)
+++|+||||+|... ...+.+.|+..+++|+.+.++....+.+.+..... ...++..++
T Consensus 91 ------~~iDilin~Ag~g~-----------~~~~~e~~~~~~~~nv~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 148 (191)
T d1luaa1 91 ------KGAHFVFTAGAIGL-----------ELLPQAAWQNESSIEIVADYNAQPPLGIGGIDATD-----KGKEYGGKR 148 (191)
T ss_dssp ------TTCSEEEECCCTTC-----------CCBCHHHHHTCTTCCEEEECCCSSSCSBTTCCTTC-----EEEEETTEE
T ss_pred ------cCcCeeeecCcccc-----------ccCCHHHHHhhhcceeehhHhhHHHHHHHhhhhcc-----CcEEecceE
Confidence 57999999999742 13457889999999998888765544433322211 123333232
Q ss_pred cccccCCCCCCCcccchhhHHHHHHHHH
Q 023441 180 RVGSIGDNRLGGWHSYRASKAALNQLTK 207 (282)
Q Consensus 180 ~~~~~~~~~~~~~~~Y~~sKa~~~~l~~ 207 (282)
..+..+ .+...|+++|+++..+++
T Consensus 149 ~~g~~~----~g~~~y~~sk~a~~~l~~ 172 (191)
T d1luaa1 149 AFGALG----IGGLKLKLHRACIAKLFE 172 (191)
T ss_dssp EECHHH----HHHHHHHHHHHHHHHHTS
T ss_pred EEeccC----cCcHHHHHHHHHHHHHHh
Confidence 222211 122469999999887653
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.72 E-value=1.9e-16 Score=139.87 Aligned_cols=177 Identities=15% Similarity=0.073 Sum_probs=125.6
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec-------------CCCcccc----cccccccCCCceeEEEeeCCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR-------------NPNGATG----LLDLKNRFPERLDVLQLDLTV 90 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r-------------~~~~~~~----~~~~~~~~~~~v~~~~~Dls~ 90 (282)
|++||||||+|-||.+++++|+++|+. |++++. ....... ........+.++.++.+|++|
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~--V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d 78 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYE--VCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD 78 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCE--EEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCC
Confidence 789999999999999999999999988 887751 1111111 111111124579999999999
Q ss_pred hhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccc
Q 023441 91 ESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERD 170 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~ 170 (282)
.+.++++++.. ++|+|+|.|+... ......+++.....+.+|+.++.++++.+...-.+
T Consensus 79 ~~~l~~~~~~~-----~~d~ViHlAa~~~--------~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-------- 137 (393)
T d1i24a_ 79 FEFLAESFKSF-----EPDSVVHFGEQRS--------APYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEE-------- 137 (393)
T ss_dssp HHHHHHHHHHH-----CCSEEEECCSCCC--------HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHHHHHhh-----cchheeccccccc--------cccccccccccccccccccccccHHHHHHHHhccc--------
Confidence 99999998875 7999999998752 22222334556677899999999999988754322
Q ss_pred eeEEEEeeccccccCC---------------------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEeccc
Q 023441 171 VAVVANLSARVGSIGD---------------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGT 229 (282)
Q Consensus 171 ~~~iv~~ss~~~~~~~---------------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~ 229 (282)
.+++..||....... .+..+...|+.+|.+.+.+++.+..+. ++.+.++.|+.
T Consensus 138 -~~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~-----~l~~~~lR~~~ 211 (393)
T d1i24a_ 138 -CHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-----GIRATDLNQGV 211 (393)
T ss_dssp -CEEEEECCGGGGCCCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECE
T ss_pred -cceeeccccccccccccccccccccccccccccccccccccccHHHHHhhhhccccccccccc-----ceeeeeccccc
Confidence 266667765432110 012233569999999999999888876 68888888887
Q ss_pred ccCC
Q 023441 230 VDTD 233 (282)
Q Consensus 230 v~t~ 233 (282)
+..+
T Consensus 212 v~G~ 215 (393)
T d1i24a_ 212 VYGV 215 (393)
T ss_dssp EECS
T ss_pred ccCC
Confidence 7654
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.69 E-value=1.2e-15 Score=133.26 Aligned_cols=218 Identities=13% Similarity=0.136 Sum_probs=145.6
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc--cccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA--TGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~--~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
+||||||+|.||.+++++|++.|.+ .|+++++..... +.+.... ...++.++.+|++|...+.++++.. +
T Consensus 2 kILItG~tGfIGs~l~~~L~~~g~~-vv~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~l~~~~~~~-----~ 73 (361)
T d1kewa_ 2 KILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKLTYAGNLESLSDIS--ESNRYNFEHADICDSAEITRIFEQY-----Q 73 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSC-EEEEEECCCTTCCGGGGTTTT--TCTTEEEEECCTTCHHHHHHHHHHH-----C
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCccccHHHHHhhh--hcCCcEEEEccCCCHHHHHHHHHhC-----C
Confidence 5899999999999999999999988 344444332221 1122221 1358999999999999999888764 7
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC--
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG-- 185 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~-- 185 (282)
+|++||+|+... . ..+.++..+.+++|+.++.++++.+.......... .....++|+.||....-.
T Consensus 74 ~d~VihlAa~~~--------~---~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~-~~~~~~~i~~SS~~vyg~~~ 141 (361)
T d1kewa_ 74 PDAVMHLAAESH--------V---DRSITGPAAFIETNIVGTYALLEVARKYWSALGED-KKNNFRFHHISTDEVYGDLP 141 (361)
T ss_dssp CSEEEECCSCCC--------H---HHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHH-HHHHCEEEEEEEGGGGCCCC
T ss_pred CCEEEECccccc--------h---hhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-ccCceEEEEeccceeeCCCc
Confidence 999999998653 1 11123445679999999999999988764321100 001137888888653311
Q ss_pred ----------------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--c--------c
Q 023441 186 ----------------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--F--------Q 239 (282)
Q Consensus 186 ----------------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--~--------~ 239 (282)
..+..+...|+.+|.+.+.+++.++..+ ++.+.++.|+.+..|.... + .
T Consensus 142 ~~~~~~~~~~~~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~-----~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~ 216 (361)
T d1kewa_ 142 HPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY-----GLPTIVTNCSNNYGPYHFPEKLIPLVILNAL 216 (361)
T ss_dssp CGGGSCTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECEEESTTCCTTSHHHHHHHHHH
T ss_pred cCCccccccCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh-----CCCEEEEecCceECcCCCcCcHHHHHHHHHH
Confidence 0112234569999999999999998876 5777888898876654211 0 0
Q ss_pred cCCC---------CCCCCChHHHHHHHHHHHhhcCCCCCCceeec
Q 023441 240 RNVP---------EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 240 ~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~ 275 (282)
...+ ...+...++++++++.++.... .|..+.+
T Consensus 217 ~g~~~~v~g~g~~~r~~i~v~D~a~ai~~~~~~~~---~~~~~Ni 258 (361)
T d1kewa_ 217 EGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGK---AGETYNI 258 (361)
T ss_dssp HTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC---TTCEEEE
T ss_pred cCCCcEEeCCCCeEEeCEEHHHHHHHHHHHHhcCC---CCCeEEE
Confidence 0111 1124689999999999987643 2444544
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.68 E-value=1.8e-16 Score=137.57 Aligned_cols=218 Identities=14% Similarity=0.032 Sum_probs=147.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc--cCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN--RFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~--~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+||+||||||+|-||..++++|+++|++ |+.+.|+..+...+..... .......++..|++|.+++.+++.
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~--V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 82 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHGYK--VRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK----- 82 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT-----
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCcCE--EEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc-----
Confidence 4899999999999999999999999988 8889998765544332211 112244567789999988776654
Q ss_pred cCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccccc
Q 023441 105 YGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSI 184 (282)
Q Consensus 105 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~ 184 (282)
.+|+++|+++... .. ......+..|+.++.++++.+...... .++|++||..+..
T Consensus 83 --~~~~v~~~a~~~~-------~~-------~~~~~~~~~nv~gt~~ll~~~~~~~~v---------~~~i~~SS~~~~~ 137 (342)
T d1y1pa1 83 --GAAGVAHIASVVS-------FS-------NKYDEVVTPAIGGTLNALRAAAATPSV---------KRFVLTSSTVSAL 137 (342)
T ss_dssp --TCSEEEECCCCCS-------CC-------SCHHHHHHHHHHHHHHHHHHHHTCTTC---------CEEEEECCGGGTC
T ss_pred --cchhhhhhccccc-------cc-------ccccccccchhhhHHHHHHhhhccccc---------ccccccccceeec
Confidence 6899999999753 11 122345678999999999887664211 2888888865432
Q ss_pred CCC----------------------------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc
Q 023441 185 GDN----------------------------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR 236 (282)
Q Consensus 185 ~~~----------------------------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~ 236 (282)
... +......|+.+|...+.+++.++.+... ++++.+++|+.+..+...
T Consensus 138 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~---~~~~~~i~p~~v~Gp~~~ 214 (342)
T d1y1pa1 138 IPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKP---HFTLNAVLPNYTIGTIFD 214 (342)
T ss_dssp CCCTTCCCCEECTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCC---SSEEEEEEESEEECCCSC
T ss_pred cCCCCCCCccccccccccccccccccccccCCCCCcCcccchhHhHHHHHHHhhhhccc---ccccceecccceeCCCCC
Confidence 111 1112346999999999999988877643 688888888877554321
Q ss_pred ccc---------------------cCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcccC
Q 023441 237 PFQ---------------------RNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQEIP 281 (282)
Q Consensus 237 ~~~---------------------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~~ 281 (282)
... .......+...+++|...+..+.. ....|.++...++.+.
T Consensus 215 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~v~v~Dva~~~i~~l~~--~~~~g~~~~~~~~~~t 278 (342)
T d1y1pa1 215 PETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVL--PQIERRRVYGTAGTFD 278 (342)
T ss_dssp TTTCCCHHHHHHHHHHTTCCCHHHHTCCSEEEEEHHHHHHHHHHHHHC--TTCCSCEEEECCEEEC
T ss_pred ccccccchHHHHHHHHcCCcCcccCCccceeeeeHHHHHHHHHHhhcC--ccccceEEEEcCCceE
Confidence 100 011112346788999998887765 3446666655555443
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=4.5e-15 Score=128.46 Aligned_cols=206 Identities=13% Similarity=0.069 Sum_probs=140.7
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc--ccccccc----cCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT--GLLDLKN----RFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~--~~~~~~~----~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|++|||||+|.||.+++++|.++|++ |+.++|...... .+..+.. ....++.++.+|++|.+.+.+++...
T Consensus 2 KI~LVTG~tGfIG~~l~~~Ll~~g~~--V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 78 (347)
T d1t2aa_ 2 NVALITGITGQDGSYLAEFLLEKGYE--VHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV- 78 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH-
T ss_pred CEEEEecCCcHHHHHHHHHHHHCcCE--EEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc-
Confidence 34499999999999999999999988 999999654321 1111111 12347899999999999999998875
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++++++|+++... . ....+.....+++|+.++.++++++...-.... .++|++||...
T Consensus 79 ----~~~~v~~~~a~~~-------~----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~-------~~~i~~SS~~v 136 (347)
T d1t2aa_ 79 ----KPTEIYNLGAQSH-------V----KISFDLAEYTADVDGVGTLRLLDAVKTCGLINS-------VKFYQASTSEL 136 (347)
T ss_dssp ----CCSEEEECCSCCC-------H----HHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTT-------CEEEEEEEGGG
T ss_pred ----ccceeeeeeeccc-------c----chhhccchhhhhhHHHHHHHHHHHHHHcCCCCC-------cEEEEecchhe
Confidence 7889999988653 1 111233445689999999999998876543322 27888887543
Q ss_pred c--cC------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc--------------cc--
Q 023441 183 S--IG------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR--------------PF-- 238 (282)
Q Consensus 183 ~--~~------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~--------------~~-- 238 (282)
. .. +.+..+...|+.||.+.+.+++.+.+.+ ++.+..+.|+.+..|... ..
T Consensus 137 yg~~~~~~~~E~~~~~P~~~Yg~sK~~aE~~~~~~~~~~-----~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~ 211 (347)
T d1t2aa_ 137 YGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY-----NLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLG 211 (347)
T ss_dssp TCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHT
T ss_pred ecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh-----CCCEEEEEecceeCCCCCCCccccccceeeehhhcC
Confidence 2 11 1123345679999999999999988776 566777788666554211 00
Q ss_pred -------ccCCCCCCCCChHHHHHHHHHHHhhc
Q 023441 239 -------QRNVPEGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 239 -------~~~~~~~~~~~~~~~a~~~~~~~~~~ 264 (282)
............+++++++..++...
T Consensus 212 ~~~~~~~g~g~~~r~~i~v~D~~~a~~~~~~~~ 244 (347)
T d1t2aa_ 212 QLECFSLGNLDAKRDWGHAKDYVEAMWLMLQND 244 (347)
T ss_dssp SCSCEEESCTTCEECCEEHHHHHHHHHHHHHSS
T ss_pred CcceeecCCCcceeeeeEecHHHHHHHHHhhcC
Confidence 00111124568899999999988764
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=2.7e-15 Score=129.71 Aligned_cols=172 Identities=17% Similarity=0.080 Sum_probs=125.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccc-ccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD-LKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~-~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++|||||+|-||..++++|+++|++ |++++|-......... .......++.++++|++|.+.+.++++.. ++
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g~~--V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~-----~~ 74 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNGHD--VIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDH-----AI 74 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHT-----TC
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCE--EEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhcc-----CC
Confidence 4999999999999999999999988 8888875544333211 11112358999999999999998888863 69
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC--
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD-- 186 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~-- 186 (282)
|++||+|+... .. .+.+...+.+++|+.++.++++++...-. .++|+.||.......
T Consensus 75 d~ViHlAa~~~-------~~----~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v----------~~~i~~Ss~~vy~~~~~ 133 (338)
T d1udca_ 75 DTVIHFAGLKA-------VG----ESVQKPLEYYDNNVNGTLRLISAMRAANV----------KNFIFSSSATVYGDQPK 133 (338)
T ss_dssp SEEEECCSCCC-------HH----HHHHCHHHHHHHHHHHHHHHHHHHHHHTC----------CEEEEEEEGGGGCSCCS
T ss_pred CEEEECCCccc-------hh----hHHhCHHHHHHhHHHHHHHHHHHHHHhCC----------CEEEecCcceEEccccc
Confidence 99999999642 11 12233457899999999999999876532 277888886644221
Q ss_pred -------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC
Q 023441 187 -------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233 (282)
Q Consensus 187 -------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~ 233 (282)
+.......|+.+|.+.+.+.+....+.. +..+..+.|+.+..+
T Consensus 134 ~~~~e~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~----~~~~~ilR~~~v~G~ 183 (338)
T d1udca_ 134 IPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQP----DWSIALLRYFNPVGA 183 (338)
T ss_dssp SSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHST----TCEEEEEEECEEECC
T ss_pred cccccccccCCCcchHHHHHhhhhHHHHHHHhhcc----CCeEEEEeeccEEec
Confidence 1223467799999999999887776643 567777778776654
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.65 E-value=5.2e-15 Score=126.68 Aligned_cols=203 Identities=12% Similarity=0.001 Sum_probs=140.9
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
|+||||||||.||++++++|+++|++ |+.++|....... ..+.+ ....++.++.+|++|.+.+.+++... .
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~--V~~~~r~~~~~~~~~l~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~-----~ 72 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYR--VHGLVARRSSDTRWRLREL-GIEGDIQYEDGDMADACSVQRAVIKA-----Q 72 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCCSSCCCHHHHHT-TCGGGEEEEECCTTCHHHHHHHHHHH-----C
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCE--EEEEECCCCcccHHHHHHh-cccCCcEEEEccccChHHhhhhhccc-----c
Confidence 79999999999999999999999988 9999987654321 11111 11247999999999999998888765 6
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc--cC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS--IG 185 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~--~~ 185 (282)
.++++|+++... .. ...+.....+.+|+.++.++++++...-.. .++++.|+.... ..
T Consensus 73 ~~~~~~~a~~~~-------~~----~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~---------~~~i~~Ss~~~~~~~~ 132 (321)
T d1rpna_ 73 PQEVYNLAAQSF-------VG----ASWNQPVTTGVVDGLGVTHLLEAIRQFSPE---------TRFYQASTSEMFGLIQ 132 (321)
T ss_dssp CSEEEECCSCCC-------HH----HHTTSHHHHHHHHTHHHHHHHHHHHHHCTT---------SEEEEEEEGGGGCSCS
T ss_pred cccccccccccc-------cc----ccccchHHHHhhhhhchHHHHHHHHHhCCC---------cccccccchhhcCccc
Confidence 788888887653 11 112345577899999999999988664322 266666664322 11
Q ss_pred ------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--------------cccCCC--
Q 023441 186 ------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--------------FQRNVP-- 243 (282)
Q Consensus 186 ------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--------------~~~~~~-- 243 (282)
+.+......|+.+|.+.+.+.+.++.+. ++.+.++.|+.+..|.... .....+
T Consensus 133 ~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i 207 (321)
T d1rpna_ 133 AERQDENTPFYPRSPYGVAKLYGHWITVNYRESF-----GLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQEL 207 (321)
T ss_dssp SSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCE
T ss_pred CCCCCCCCCccccChhHHHHHHHHHHHHHHHhhc-----CCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcE
Confidence 1223456789999999999999998886 5666767776665553210 000101
Q ss_pred -------CCCCCChHHHHHHHHHHHhhc
Q 023441 244 -------EGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 244 -------~~~~~~~~~~a~~~~~~~~~~ 264 (282)
...+...+|+++.+..++...
T Consensus 208 ~~g~g~~~r~~i~v~D~~~~~~~~~~~~ 235 (321)
T d1rpna_ 208 RLGNVDAKRDWGFAGDYVEAMWLMLQQD 235 (321)
T ss_dssp EESCTTCEEECEEHHHHHHHHHHHHHSS
T ss_pred EECCCCeEEccEEeHHHHHHHHHHHhcC
Confidence 123568899999999988754
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.65 E-value=9.9e-15 Score=126.49 Aligned_cols=214 Identities=11% Similarity=0.099 Sum_probs=141.1
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|+||||||||-||..++++|.++|..++|+..++-..... ........+.++.++.+|++|.+.+.+++. ..
T Consensus 3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~-------~~ 74 (346)
T d1oc2a_ 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN-KANLEAILGDRVELVVGDIADAELVDKLAA-------KA 74 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC-GGGTGGGCSSSEEEEECCTTCHHHHHHHHT-------TC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCcccc-HHHHHHhhcCCeEEEEccCCCHHHHHHHHh-------hh
Confidence 7899999999999999999999999855555543221111 111111224689999999999998888764 57
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc--cccC-
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV--GSIG- 185 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~--~~~~- 185 (282)
|.++|.|+... .. ....+..+.+++|+.++.+++..+...-. +++++||.. +..+
T Consensus 75 ~~v~~~a~~~~-------~~----~~~~~~~~~~~~N~~g~~nll~~~~~~~~-----------k~i~~ss~~vyg~~~~ 132 (346)
T d1oc2a_ 75 DAIVHYAAESH-------ND----NSLNDPSPFIHTNFIGTYTLLEAARKYDI-----------RFHHVSTDEVYGDLPL 132 (346)
T ss_dssp SEEEECCSCCC-------HH----HHHHCCHHHHHHHTHHHHHHHHHHHHHTC-----------EEEEEEEGGGGCCBCC
T ss_pred hhhhhhhhccc-------cc----chhhCcccceeeehHhHHhhhhhhccccc-----------cccccccceEecccCc
Confidence 88999998763 11 11223456789999999999987765432 444444433 2110
Q ss_pred -----------------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-----------
Q 023441 186 -----------------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP----------- 237 (282)
Q Consensus 186 -----------------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~----------- 237 (282)
..+..+...|+.+|.+.+.+++.+.+++ ++++.++.|+.+..|....
T Consensus 133 ~~~~~~~~~~~~~~~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~-----~i~~~ilR~~~vyGp~~~~~~~~~~~i~~~ 207 (346)
T d1oc2a_ 133 REDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF-----GVKATISNCSNNYGPYQHIEKFIPRQITNI 207 (346)
T ss_dssp GGGSTTTTCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECCEESTTCCTTSHHHHHHHHH
T ss_pred cccccccccCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHc-----CCCEEEEeecceeCCCCCccchhHHHHHHH
Confidence 0112234669999999999999988876 7889999998887653210
Q ss_pred --------cccCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 238 --------FQRNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 238 --------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
+............++++++++.++.... ..+.+....++.
T Consensus 208 ~~~~~~~i~~~g~~~r~~i~v~D~a~a~~~~~~~~~--~~~~~~~~~~~~ 255 (346)
T d1oc2a_ 208 LAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGR--MGETYLIGADGE 255 (346)
T ss_dssp HHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHCC--TTCEEEECCSCE
T ss_pred HcCCceeEeCCCCccccccchhhHHHHHHHHHhhcc--cCcccccccccc
Confidence 0011112345678999999888877543 344444444443
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=3.8e-15 Score=129.24 Aligned_cols=172 Identities=15% Similarity=0.151 Sum_probs=122.3
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc-cccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA-TGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~-~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
|+||||||+|-||..++++|+++|++ |+++++-.... ............++.++.+|++|.+++++++... +
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~--V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 74 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYD--CVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEY-----K 74 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHS-----C
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCe--EEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhcc-----C
Confidence 89999999999999999999999987 88877644332 2222222222457999999999999999888753 7
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC--
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG-- 185 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~-- 185 (282)
+|+++|+|+... .... .+.-.....+|+.++.++++++...-. .+++++||......
T Consensus 75 ~d~VihlAa~~~--------~~~~---~~~~~~~~~~N~~~t~~ll~~~~~~~i----------~~~i~~SS~~vyg~~~ 133 (347)
T d1z45a2 75 IDSVIHFAGLKA--------VGES---TQIPLRYYHNNILGTVVLLELMQQYNV----------SKFVFSSSATVYGDAT 133 (347)
T ss_dssp CCEEEECCSCCC--------HHHH---HHSHHHHHHHHHHHHHHHHHHHHHHTC----------CEEEEEEEGGGGCCGG
T ss_pred CCEEEEcccccc--------cccc---ccCcccccccchhhhHHHHHHHHhccc----------ceEEeecceeeecCcc
Confidence 999999999753 1111 223346788999999999999875432 27888888553321
Q ss_pred ----------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEeccccc
Q 023441 186 ----------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVD 231 (282)
Q Consensus 186 ----------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~ 231 (282)
+.+..+...|+.+|.+.+.+.+.+.+.... ++.+..+.|+.+.
T Consensus 134 ~~~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~---~~~~~~lR~~~v~ 186 (347)
T d1z45a2 134 RFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKK---SWKFAILRYFNPI 186 (347)
T ss_dssp GSTTCCSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHSTT---SCEEEEEEECEEE
T ss_pred cCCCCCccccccCCCCCChhHhHHHHHHHHHHHHHHhhcc---CCcEEEEeecceE
Confidence 122234567999999999999888765332 5666666765554
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.63 E-value=1.4e-14 Score=124.72 Aligned_cols=208 Identities=13% Similarity=0.003 Sum_probs=141.8
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc-----ccccccccc-cCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG-----ATGLLDLKN-RFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~-----~~~~~~~~~-~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
|++|||||||.||.+++++|+++|++ |+.++|.... ...+..... .....+.++.+|+++.+++.+.++..
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~- 78 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYE--VHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVI- 78 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHH-
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCE--EEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhh-
Confidence 89999999999999999999999988 9999985432 222221111 11347889999999999999988764
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
++|+++|+|+... .. ...+.....+..|..+..++..++.......... .+++..||.+.
T Consensus 79 ----~~D~Vih~Aa~~~-------~~----~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ss~~~ 138 (339)
T d1n7ha_ 79 ----KPDEVYNLAAQSH-------VA----VSFEIPDYTADVVATGALRLLEAVRSHTIDSGRT-----VKYYQAGSSEM 138 (339)
T ss_dssp ----CCSEEEECCSCCC-------HH----HHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCC-----CEEEEEEEGGG
T ss_pred ----ccchhhhcccccc-------cc----ccccCccccccccccccchhhhhhhhcccccccc-----eeeeeccccee
Confidence 7999999999763 11 1123344668899999999988887654332111 25555555443
Q ss_pred ccC-------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--------------cccC
Q 023441 183 SIG-------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--------------FQRN 241 (282)
Q Consensus 183 ~~~-------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--------------~~~~ 241 (282)
... ..+......|+.+|.+.+.++...++.. ++.+.++.|+.+..|.... ....
T Consensus 139 ~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~ 213 (339)
T d1n7ha_ 139 FGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY-----GLFACNGILFNHESPRRGENFVTRKITRALGRIKVGL 213 (339)
T ss_dssp GTTSCSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTS
T ss_pred cccCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHh-----CCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCC
Confidence 211 1223456789999999999999988876 6788888998776653211 0000
Q ss_pred ---------CCCCCCCChHHHHHHHHHHHhhc
Q 023441 242 ---------VPEGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 242 ---------~~~~~~~~~~~~a~~~~~~~~~~ 264 (282)
.........++++..+..++...
T Consensus 214 ~~~~~~g~~~~~rd~~~v~D~a~~~~~~~~~~ 245 (339)
T d1n7ha_ 214 QTKLFLGNLQASRDWGFAGDYVEAMWLMLQQE 245 (339)
T ss_dssp CCCEEESCTTCEEECEEHHHHHHHHHHHHTSS
T ss_pred CCeEEeCCCCccccceeeehHHHHHHHHHhcC
Confidence 00112457899999988888754
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.6e-14 Score=116.10 Aligned_cols=194 Identities=11% Similarity=0.106 Sum_probs=124.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
..|+++||||||.||.+++++|+++|++ |.+..|+..++.... ...++++.+|++|.+++.++++
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~--V~~~~R~~~~~~~~~------~~~~~~~~gD~~d~~~l~~al~------- 66 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYE--VTVLVRDSSRLPSEG------PRPAHVVVGDVLQAADVDKTVA------- 66 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCE--EEEEESCGGGSCSSS------CCCSEEEESCTTSHHHHHHHHT-------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCE--EEEEEcChhhccccc------ccccccccccccchhhHHHHhc-------
Confidence 4588999999999999999999999987 999999987754321 2468899999999999887766
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
..|++|+++|... ... ...++..++.++++++. +.+- .++|++||.......
T Consensus 67 ~~d~vi~~~g~~~-------~~~-----------~~~~~~~~~~~l~~aa~----~~~v------~r~i~~ss~~~~~~~ 118 (205)
T d1hdoa_ 67 GQDAVIVLLGTRN-------DLS-----------PTTVMSEGARNIVAAMK----AHGV------DKVVACTSAFLLWDP 118 (205)
T ss_dssp TCSEEEECCCCTT-------CCS-----------CCCHHHHHHHHHHHHHH----HHTC------CEEEEECCGGGTSCT
T ss_pred CCCEEEEEeccCC-------chh-----------hhhhhHHHHHHHHHHHH----hcCC------CeEEEEeeeeccCCC
Confidence 5899999998753 110 01234445555555543 2222 388888886654321
Q ss_pred CCC-CCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc-cc---ccCCCCCCCCChHHHHHHHHHHH
Q 023441 187 NRL-GGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR-PF---QRNVPEGKLFTKEFSVQKLLNII 261 (282)
Q Consensus 187 ~~~-~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~-~~---~~~~~~~~~~~~~~~a~~~~~~~ 261 (282)
+.. +....|...|...+.+. ... +++...|.||.+...... .+ ..........+.+++|+.++.++
T Consensus 119 ~~~~~~~~~~~~~~~~~e~~l-------~~~--~~~~tiirp~~~~~~~~~~~~~~~~~~~~~~~~i~~~DvA~~~~~~l 189 (205)
T d1hdoa_ 119 TKVPPRLQAVTDDHIRMHKVL-------RES--GLKYVAVMPPHIGDQPLTGAYTVTLDGRGPSRVISKHDLGHFMLRCL 189 (205)
T ss_dssp TCSCGGGHHHHHHHHHHHHHH-------HHT--CSEEEEECCSEEECCCCCSCCEEESSSCSSCSEEEHHHHHHHHHHTT
T ss_pred ccccccccccchHHHHHHHHH-------Hhc--CCceEEEecceecCCCCcccEEEeeCCCCCCCcCCHHHHHHHHHHHh
Confidence 111 11223444444444322 223 788888899987543222 11 11222344568899999999888
Q ss_pred hhcCCCCCCceee
Q 023441 262 NNIKSHDNGKFFA 274 (282)
Q Consensus 262 ~~~~~~~~g~~~~ 274 (282)
+... ..|+.+.
T Consensus 190 ~~~~--~~g~~~~ 200 (205)
T d1hdoa_ 190 TTDE--YDGHSTY 200 (205)
T ss_dssp SCST--TTTCEEE
T ss_pred CCCC--CCCEEEe
Confidence 6532 3355443
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=3.9e-14 Score=122.31 Aligned_cols=207 Identities=13% Similarity=0.092 Sum_probs=140.5
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++|||||+|.||.+++++|+++|.. .|+.+++.........+ ..++.++.+|+++.+++.+.+.. ++|
T Consensus 2 KILITG~tGfiG~~l~~~Ll~~g~~-~V~~ld~~~~~~~~~~~-----~~~~~~i~~Di~~~~~~~~~~~~------~~d 69 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDAISRFLN-----HPHFHFVEGDISIHSEWIEYHVK------KCD 69 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGGGGGGTT-----CTTEEEEECCTTTCSHHHHHHHH------HCS
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCcchhhhcc-----CCCeEEEECccCChHHHHHHHHh------CCC
Confidence 5899999999999999999999942 38887775544332221 35899999999988776654332 489
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC--C-
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG--D- 186 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~--~- 186 (282)
+++|+|+... .. ...+.....+.+|+.++.++++.+...-. +.++.||...... .
T Consensus 70 ~Vih~a~~~~-------~~----~~~~~~~~~~~~nv~gt~~ll~~~~~~~~-----------~~~~~ss~~~~~~~~~~ 127 (342)
T d2blla1 70 VVLPLVAIAT-------PI----EYTRNPLRVFELDFEENLRIIRYCVKYRK-----------RIIFPSTSEVYGMCSDK 127 (342)
T ss_dssp EEEECBCCCC-------HH----HHHHSHHHHHHHHTHHHHHHHHHHHHTTC-----------EEEEECCGGGGBTCCCS
T ss_pred cccccccccc-------cc----ccccCCccccccccccccccccccccccc-----------ccccccccccccccccc
Confidence 9999999863 11 11233456789999999999999765322 3344444332211 1
Q ss_pred ------------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccc---------------
Q 023441 187 ------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQ--------------- 239 (282)
Q Consensus 187 ------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~--------------- 239 (282)
+.......|+.+|...+.+.+.+++.+ ++.+..+.|..+..+......
T Consensus 128 ~~~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 202 (342)
T d2blla1 128 YFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE-----GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLIL 202 (342)
T ss_dssp SBCTTTCCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHH
T ss_pred ccccccccccccccCCCcchhhhcccchhhhhhhhhccc-----CceeEEeeccccccccccccccccccccccchHHHH
Confidence 111234679999999999999998886 566666677776654322110
Q ss_pred ---c---------CCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeec
Q 023441 240 ---R---------NVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 240 ---~---------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~ 275 (282)
. ..........+++++++..++........|..+.+
T Consensus 203 ~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~~~~~~~~~g~~~Ni 250 (342)
T d2blla1 203 NLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINI 250 (342)
T ss_dssp HHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEE
T ss_pred HHHhCCCccccCCCCeeeeecccccccceeeeehhhccccCCCeEEEE
Confidence 0 01112356889999999999987666666788776
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.59 E-value=3.1e-14 Score=116.06 Aligned_cols=214 Identities=13% Similarity=0.032 Sum_probs=133.8
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++||||||||.||++++++|+++|..+.|+...|++++... ...+++++.+|+++.+++.++++ .+
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~-------~~ 69 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK-------IGGEADVFIGDITDADSINPAFQ-------GI 69 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHH-------TTCCTTEEECCTTSHHHHHHHHT-------TC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHh-------ccCCcEEEEeeeccccccccccc-------cc
Confidence 79999999999999999999999988677778887754321 23478899999999998887765 68
Q ss_pred cEEEECcccCCCCCCCC--CcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 109 NLLINASGILSIPNVLQ--PETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~--~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
|.+||+++....+.... ..................+|+.+..++.......... .....++.......
T Consensus 70 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~s~~~~~~~~ 139 (252)
T d2q46a1 70 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK----------HIVVVGSMGGTNPD 139 (252)
T ss_dssp SEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS----------EEEEEEETTTTCTT
T ss_pred eeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccccc----------ccccccccccCCCC
Confidence 99999998764211110 0111122233445566788888988887766554332 56666665543332
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc---ccC-----CCCCCCCChHHHHHHHH
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF---QRN-----VPEGKLFTKEFSVQKLL 258 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~---~~~-----~~~~~~~~~~~~a~~~~ 258 (282)
. +....+...+.........+..+. ++.+..++|+.+..+..... ... .......+.+++|++++
T Consensus 140 ~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ilRp~~v~g~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~a~~ 212 (252)
T d2q46a1 140 H--PLNKLGNGNILVWKRKAEQYLADS-----GTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCI 212 (252)
T ss_dssp C--GGGGGGGCCHHHHHHHHHHHHHHS-----SSCEEEEEECEEECSCTTSSCEEEESTTGGGGSSCCEEEHHHHHHHHH
T ss_pred c--ccccccccchhhhhhhhhhhhhcc-----cccceeecceEEECCCcchhhhhhccCcccccCCCCeEEHHHHHHHHH
Confidence 1 111222222222222223333332 67788889999866643211 111 11234567899999999
Q ss_pred HHHhhcCCCCCCceeec
Q 023441 259 NIINNIKSHDNGKFFAW 275 (282)
Q Consensus 259 ~~~~~~~~~~~g~~~~~ 275 (282)
.++... ...|+.|.+
T Consensus 213 ~~l~~~--~~~g~~~~i 227 (252)
T d2q46a1 213 QALLFE--EAKNKAFDL 227 (252)
T ss_dssp HHTTCG--GGTTEEEEE
T ss_pred HHhCCc--cccCcEEEE
Confidence 888653 245666654
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.59 E-value=1.1e-13 Score=118.53 Aligned_cols=208 Identities=13% Similarity=0.097 Sum_probs=141.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCc----EEEEeecCCCccc--ccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKG----CVIATCRNPNGAT--GLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~----~vi~~~r~~~~~~--~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++|||||+|-||.+++++|+++|..+ +++..++...... ..... ....++.++.+|.++........
T Consensus 2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~----- 74 (322)
T d1r6da_ 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPV--DADPRLRFVHGDIRDAGLLAREL----- 74 (322)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGG--TTCTTEEEEECCTTCHHHHHHHT-----
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhh--hcCCCeEEEEeccccchhhhccc-----
Confidence 58999999999999999999999762 2333333222211 11111 22458999999999988666433
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
...|.++|+|+... . ..........+++|+.++.++++++...-. .++|+.||....
T Consensus 75 --~~~d~vi~~a~~~~-------~----~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~----------~~~I~~Ss~~~y 131 (322)
T d1r6da_ 75 --RGVDAIVHFAAESH-------V----DRSIAGASVFTETNVQGTQTLLQCAVDAGV----------GRVVHVSTNQVY 131 (322)
T ss_dssp --TTCCEEEECCSCCC-------H----HHHHHCCHHHHHHHTHHHHHHHHHHHHTTC----------CEEEEEEEGGGG
T ss_pred --cccceEEeeccccc-------c----cccccchHHHhhhhHHHHHHHHHHHHHcCC----------ceEEEeecceee
Confidence 37899999998753 1 112344556788999999999998865321 278888886543
Q ss_pred cC--------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--c--------ccCCC--
Q 023441 184 IG--------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--F--------QRNVP-- 243 (282)
Q Consensus 184 ~~--------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--~--------~~~~~-- 243 (282)
-. +.+..+...|+.+|.+.+.+++.++++. ++.+.++.|+.+..+.... + ....+
T Consensus 132 g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~ 206 (322)
T d1r6da_ 132 GSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTY-----GLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLP 206 (322)
T ss_dssp CCCSSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEE
T ss_pred cCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh-----CCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcE
Confidence 21 1223455689999999999999998876 6778888998887653221 0 00111
Q ss_pred -------CCCCCChHHHHHHHHHHHhhcCCCCCCceeec
Q 023441 244 -------EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAW 275 (282)
Q Consensus 244 -------~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~ 275 (282)
...+...+|+|++++.++.... .|..+.+
T Consensus 207 v~~~g~~~r~~i~v~D~a~ai~~~~~~~~---~~~~~ni 242 (322)
T d1r6da_ 207 LYGDGANVREWVHTDDHCRGIALVLAGGR---AGEIYHI 242 (322)
T ss_dssp EETTSCCEEEEEEHHHHHHHHHHHHHHCC---TTCEEEE
T ss_pred EecCCCeEEccEEHHHHHHHHHHHHhCCC---CCCeeEE
Confidence 1134688999999999998644 3555544
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.59 E-value=2.5e-14 Score=123.99 Aligned_cols=210 Identities=14% Similarity=0.166 Sum_probs=144.3
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++||++|||||+|.||..++++|+++|++ |++++|+........+.. .....+.++.+|++|.+.+.+++...
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~--V~~~~r~~~~~~~~~~~~-~~~~~i~~~~~Dl~d~~~l~~~~~~~---- 78 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGAT--VKGYSLTAPTVPSLFETA-RVADGMQSEIGDIRDQNKLLESIREF---- 78 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSCSSSSCHHHHT-TTTTTSEEEECCTTCHHHHHHHHHHH----
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCE--EEEEECCCCccHHHHhhh-hcccCCeEEEeeccChHhhhhhhhhc----
Confidence 78999999999999999999999999988 999999887765543332 22357999999999999998888764
Q ss_pred CCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC
Q 023441 106 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG 185 (282)
Q Consensus 106 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~ 185 (282)
++|+++|+++... . ....+.....+.+|+.++.++++++...-.. ..++..|+......
T Consensus 79 -~~~~v~~~aa~~~--------~---~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~---------~~~~~~s~~~~~~~ 137 (356)
T d1rkxa_ 79 -QPEIVFHMAAQPL--------V---RLSYSEPVETYSTNVMGTVYLLEAIRHVGGV---------KAVVNITSDKCYDN 137 (356)
T ss_dssp -CCSEEEECCSCCC--------H---HHHHHCHHHHHHHHTHHHHHHHHHHHHHCCC---------CEEEEECCGGGBCC
T ss_pred -hhhhhhhhhcccc--------c---cccccCCccccccccccchhhhhhhhccccc---------cccccccccccccc
Confidence 7999999998753 1 1113345667899999999999988754321 14555554433221
Q ss_pred ---------CCCCCCcccchhhHHHHHHHHHHHHHHhccC----CCCeEEEEEecccccCCCC---ccc--------cc-
Q 023441 186 ---------DNRLGGWHSYRASKAALNQLTKSVSVEFGRK----KDPVICILLHPGTVDTDLS---RPF--------QR- 240 (282)
Q Consensus 186 ---------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~----~~~i~v~~i~Pg~v~t~~~---~~~--------~~- 240 (282)
..+..+...|+.+|...+.+.+.++.++... ..++.+....|+.+..+-. ..+ ..
T Consensus 138 ~~~~~~~~~~~~~~p~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~ 217 (356)
T d1rkxa_ 138 KEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQS 217 (356)
T ss_dssp CCSSSCBCTTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTT
T ss_pred cccccccccccccCCCCccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCC
Confidence 1223345679999999999998888765321 1156677777876644321 000 00
Q ss_pred -------CCCCCCCCChHHHHHHHHHHHhh
Q 023441 241 -------NVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 241 -------~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
..........++++.++..++..
T Consensus 218 ~~~~~~~~~~~~~~~~v~D~~~a~~~~~~~ 247 (356)
T d1rkxa_ 218 QPVIIRNPHAIRPWQHVLEPLSGYLLLAQK 247 (356)
T ss_dssp CCEECSCTTCEECCEETHHHHHHHHHHHHH
T ss_pred CceEEeeccccccccccccccchhhhhhhh
Confidence 01112334678888888777654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.58 E-value=8.8e-14 Score=121.08 Aligned_cols=197 Identities=13% Similarity=0.008 Sum_probs=138.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++.+||||||+|-||.+++++|.++|.+ |+.+++...... ... .....+..+|+.+.+++.+++.
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~--V~~~d~~~~~~~--~~~----~~~~~~~~~D~~~~~~~~~~~~------- 78 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHY--VIASDWKKNEHM--TED----MFCDEFHLVDLRVMENCLKVTE------- 78 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEESSCCSSS--CGG----GTCSEEEECCTTSHHHHHHHHT-------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCE--EEEEeCCCccch--hhh----cccCcEEEeechhHHHHHHHhh-------
Confidence 6778999999999999999999999987 888776544321 111 1245788889999887766553
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
++|.++|+|+... .. ..........+.+|+.++.+++.++...-.+ ++|+.||.......
T Consensus 79 ~~d~Vih~a~~~~-------~~---~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk----------~~i~~SS~~~~~~~ 138 (363)
T d2c5aa1 79 GVDHVFNLAADMG-------GM---GFIQSNHSVIMYNNTMISFNMIEAARINGIK----------RFFYASSACIYPEF 138 (363)
T ss_dssp TCSEEEECCCCCC-------CH---HHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS----------EEEEEEEGGGSCGG
T ss_pred cCCeEeecccccc-------cc---cccccccccccccccchhhHHHHhHHhhCcc----------cccccccccccccc
Confidence 6899999998764 11 1223445667889999999999987664322 78888886654211
Q ss_pred ---------------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc-------------
Q 023441 187 ---------------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF------------- 238 (282)
Q Consensus 187 ---------------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~------------- 238 (282)
.+..+...|+.+|...+.+++.+.+++ ++.+..+.|+.+..+.....
T Consensus 139 ~~~~~~~~~~~~~e~~~~~p~~~Yg~sK~~~E~~~~~~~~~~-----gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~ 213 (363)
T d2c5aa1 139 KQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDF-----GIECRIGRFHNIYGPFGTWKGGREKAPAAFCRK 213 (363)
T ss_dssp GSSSSSSCEECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECCEECTTSCCSSSCCCHHHHHHHH
T ss_pred ccccccccccccccCCcCCCCCHHHHHHHHHHHHHHHHHHHh-----CCCEEEEEeeeEeccCCcccccccccccccccc
Confidence 112335679999999999999988887 67888889988876532100
Q ss_pred --c---------cCCCCCCCCChHHHHHHHHHHHhh
Q 023441 239 --Q---------RNVPEGKLFTKEFSVQKLLNIINN 263 (282)
Q Consensus 239 --~---------~~~~~~~~~~~~~~a~~~~~~~~~ 263 (282)
. .......+...++++..+..++..
T Consensus 214 ~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~~~~~ 249 (363)
T d2c5aa1 214 AQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKS 249 (363)
T ss_dssp HHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHS
T ss_pred cccccccccccCCCCeEEEEeehhHHHHHHHHHHhC
Confidence 0 001122356788999998888764
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.2e-13 Score=119.41 Aligned_cols=217 Identities=14% Similarity=0.082 Sum_probs=142.0
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc------cccccc-ccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG------ATGLLD-LKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~------~~~~~~-~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
|+||||||+|-||.+++++|+++|++ |+.+++.... .....+ .......++.++.+|++|.+.+.+++..
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~--V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~- 79 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYL--PVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKK- 79 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCC--EEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHH-
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCE--EEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccccccccccc-
Confidence 78999999999999999999999998 8887652221 111111 1111245899999999999999888775
Q ss_pred HHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccc
Q 023441 102 KEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARV 181 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~ 181 (282)
.++|+++|+|+... . ........+.+++|+.++.++++++...-. .++++.||..
T Consensus 80 ----~~~~~i~h~Aa~~~--------~---~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v----------~~~i~~ss~~ 134 (346)
T d1ek6a_ 80 ----YSFMAVIHFAGLKA--------V---GESVQKPLDYYRVNLTGTIQLLEIMKAHGV----------KNLVFSSSAT 134 (346)
T ss_dssp ----CCEEEEEECCSCCC--------H---HHHHHCHHHHHHHHHHHHHHHHHHHHHTTC----------CEEEEEEEGG
T ss_pred ----cccccccccccccC--------c---HhhHhCHHHHHHhhhcccccccchhhhcCc----------ccccccccce
Confidence 37899999999753 1 111223456789999999999988765322 2677777654
Q ss_pred cccCC---------CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc------------c--
Q 023441 182 GSIGD---------NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP------------F-- 238 (282)
Q Consensus 182 ~~~~~---------~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~------------~-- 238 (282)
..... ........|+.+|...+...+.+++... +.....+.|+.+..+.... +
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~Y~~~k~~~e~~~~~~~~~~~----~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~ 210 (346)
T d1ek6a_ 135 VYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADK----TWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMP 210 (346)
T ss_dssp GGCSCSSSSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHCT----TCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHH
T ss_pred eeeccccccccccccccccCChHHHHHHHHHHHHHHHHHhcc----CCceEEEeecceeccCCCCCcCccccccHHHHHH
Confidence 33211 1122445799999999988887765422 5666666776654431100 0
Q ss_pred -------ccC---------CC------CCCCCChHHHHHHHHHHHhhcCCCCCCceeecCC
Q 023441 239 -------QRN---------VP------EGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDG 277 (282)
Q Consensus 239 -------~~~---------~~------~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~ 277 (282)
... .+ ...+...+++|..+..++........+..+.+.+
T Consensus 211 ~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~ 271 (346)
T d1ek6a_ 211 YVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGT 271 (346)
T ss_dssp HHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred HHHHHHHcCCCcEEEcCCcccCCCCCeeEeEEEEEeccchhhhhccccccccCceEEEeCC
Confidence 000 00 0134688999998888877666666666666543
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.58 E-value=3.3e-14 Score=122.85 Aligned_cols=206 Identities=14% Similarity=0.045 Sum_probs=140.1
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc----ccccc-ccCCCceeEEEeeCCChhHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG----LLDLK-NRFPERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~----~~~~~-~~~~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
.+-|++|||||||.||.+++++|.++|++ |+.++|....... ..... .....++.++.+|+.|.........
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~--V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~- 90 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQK--VVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA- 90 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT-
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCE--EEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccc-
Confidence 34489999999999999999999999988 8888874432211 11111 1112478999999999886654433
Q ss_pred HHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 101 IKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
..+.++|.++... . ..+.++....+.+|+.++.++++++...-. .++|+.||.
T Consensus 91 ------~~~~v~~~~a~~~-------~----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~----------~~~i~~SS~ 143 (341)
T d1sb8a_ 91 ------GVDYVLHQAALGS-------V----PRSINDPITSNATNIDGFLNMLIAARDAKV----------QSFTYAASS 143 (341)
T ss_dssp ------TCSEEEECCSCCC-------H----HHHHHCHHHHHHHHTHHHHHHHHHHHHTTC----------SEEEEEEEG
T ss_pred ------ccccccccccccc-------c----cccccCccchhheeehhHHHHHHHHHhcCC----------ceEEEcccc
Confidence 6788998887653 1 112455667899999999999998875422 278888886
Q ss_pred ccccC--------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc--------------c
Q 023441 181 VGSIG--------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP--------------F 238 (282)
Q Consensus 181 ~~~~~--------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~--------------~ 238 (282)
...-. +.+..+...|+.+|.+.+.+++.+++.. ++++..+.|+.+..+.... .
T Consensus 144 ~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~ 218 (341)
T d1sb8a_ 144 STYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCY-----GFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSM 218 (341)
T ss_dssp GGGTTCCCSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH-----CCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHH
T ss_pred eeeCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHHHh-----CCCeEEEEeceeeccCcCCCCchhhhHHHHHHHH
Confidence 54321 1223345789999999999999988876 5667777887765443210 0
Q ss_pred c---------cCCCCCCCCChHHHHHHHHHHHhhcCC
Q 023441 239 Q---------RNVPEGKLFTKEFSVQKLLNIINNIKS 266 (282)
Q Consensus 239 ~---------~~~~~~~~~~~~~~a~~~~~~~~~~~~ 266 (282)
. .......+...++++.++..++.....
T Consensus 219 ~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~~ 255 (341)
T d1sb8a_ 219 IQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLD 255 (341)
T ss_dssp HHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGG
T ss_pred HcCCceEEcCCCCEEEEEEEEeccchhhhhhhhcccc
Confidence 0 001112456778999998888865443
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.3e-13 Score=117.65 Aligned_cols=205 Identities=11% Similarity=0.029 Sum_probs=133.4
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc-ccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG-ATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~-~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
|++|||||+|-||++++++|+++|++ |+.++|.... .+.+..... ..++.+...|+.+. .+.+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~--V~~~d~~~~~~~~~~~~~~~--~~~~d~~~~~~~~~------------~~~~ 65 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHE--VTVVDNFFTGRKRNVEHWIG--HENFELINHDVVEP------------LYIE 65 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCSSCCGGGTGGGTT--CTTEEEEECCTTSC------------CCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCE--EEEEeCCCcCCHHHHHHhcC--CCceEEEehHHHHH------------HHcC
Confidence 78999999999999999999999988 8888774432 222222211 12455555555432 1236
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC--
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG-- 185 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~-- 185 (282)
+|++||+|+... .. ....+..+.+++|+.++.++++++...- .++|++||......
T Consensus 66 ~d~VihlAa~~~-------~~----~~~~~~~~~~~~Nv~g~~~ll~~~~~~~-----------~k~I~~SS~~vy~~~~ 123 (312)
T d2b69a1 66 VDQIYHLASPAS-------PP----NYMYNPIKTLKTNTIGTLNMLGLAKRVG-----------ARLLLASTSEVYGDPE 123 (312)
T ss_dssp CSEEEECCSCCS-------HH----HHTTCHHHHHHHHHHHHHHHHHHHHHHT-----------CEEEEEEEGGGGBSCS
T ss_pred CCEEEECcccCC-------ch----hHHhCHHHHHHHHHHHHHHHHHHHHHcC-----------CcEEEEEChheecCCC
Confidence 999999999753 11 1112345678999999999999876532 16778887543311
Q ss_pred -----------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccc------------c---
Q 023441 186 -----------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPF------------Q--- 239 (282)
Q Consensus 186 -----------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~------------~--- 239 (282)
..+..+...|+.+|.+.+.+++..++++ ++.+..+.|+.+..|..... .
T Consensus 124 ~~~~~e~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~ 198 (312)
T d2b69a1 124 VHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQE-----GVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGE 198 (312)
T ss_dssp SSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTC
T ss_pred CCCCCccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCC
Confidence 0122345679999999999999998886 67788889988876532210 0
Q ss_pred ------cCCCCCCCCChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 240 ------RNVPEGKLFTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 240 ------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
.......+...++++++++.++... ..|.+-...+..
T Consensus 199 ~i~i~~~g~~~r~~i~v~D~~~~~~~~~~~~---~~~~~n~~~~~~ 241 (312)
T d2b69a1 199 PLTVYGSGSQTRAFQYVSDLVNGLVALMNSN---VSSPVNLGNPEE 241 (312)
T ss_dssp CEEEESSSCCEEECEEHHHHHHHHHHHHTSS---CCSCEEESCCCE
T ss_pred CeEEeCCCCeeEccEEHHHHHHHHHHHHhhc---cCCceEecCCcc
Confidence 0011124457899999998887543 344443334433
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.8e-14 Score=116.02 Aligned_cols=192 Identities=14% Similarity=0.061 Sum_probs=128.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
..+++|++|||||||.||.+++++|.++|....|++.+|++...... ....+....+|+.+.+++.+++
T Consensus 10 ~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~------~~~~i~~~~~D~~~~~~~~~~~----- 78 (232)
T d2bkaa1 10 FRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE------AYKNVNQEVVDFEKLDDYASAF----- 78 (232)
T ss_dssp HHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG------GGGGCEEEECCGGGGGGGGGGG-----
T ss_pred hCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc------ccceeeeeeecccccccccccc-----
Confidence 55788999999999999999999999999744599999987554321 1236777778888876654433
Q ss_pred HcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccc
Q 023441 104 KYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGS 183 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~ 183 (282)
..+|+++|++|... . .........+|+.++..+.+.+...-. .+++.+|+....
T Consensus 79 --~~~d~vi~~~~~~~-------~-------~~~~~~~~~~~~~~~~~~~~~a~~~~v----------~~fi~~Ss~~~~ 132 (232)
T d2bkaa1 79 --QGHDVGFCCLGTTR-------G-------KAGAEGFVRVDRDYVLKSAELAKAGGC----------KHFNLLSSKGAD 132 (232)
T ss_dssp --SSCSEEEECCCCCH-------H-------HHHHHHHHHHHTHHHHHHHHHHHHTTC----------CEEEEECCTTCC
T ss_pred --cccccccccccccc-------c-------ccchhhhhhhcccccceeeecccccCc----------cccccCCccccc
Confidence 46899999998652 1 123345567888898888888754221 278999987654
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc---------cccCCC----CCCCCCh
Q 023441 184 IGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP---------FQRNVP----EGKLFTK 250 (282)
Q Consensus 184 ~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~---------~~~~~~----~~~~~~~ 250 (282)
. .....|+.+|...+...+ ++.. -++..+.||.+..+.... +....+ .....+.
T Consensus 133 ~-----~~~~~Y~~~K~~~E~~l~----~~~~----~~~~IlRP~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 199 (232)
T d2bkaa1 133 K-----SSNFLYLQVKGEVEAKVE----ELKF----DRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPV 199 (232)
T ss_dssp T-----TCSSHHHHHHHHHHHHHH----TTCC----SEEEEEECCEEECTTGGGSHHHHHHHHHHCSCCTTGGGGTEEEH
T ss_pred c-----CccchhHHHHHHhhhccc----cccc----cceEEecCceeecCCCcCcHHHHHHHHHhhccCCcccCCCeEEH
Confidence 2 233569999988775543 2221 135566999987663221 111111 1223467
Q ss_pred HHHHHHHHHHHhhcC
Q 023441 251 EFSVQKLLNIINNIK 265 (282)
Q Consensus 251 ~~~a~~~~~~~~~~~ 265 (282)
+++|++++..+....
T Consensus 200 ~dvA~a~i~~~~~~~ 214 (232)
T d2bkaa1 200 VTVVRAMLNNVVRPR 214 (232)
T ss_dssp HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999888876543
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.53 E-value=2.1e-13 Score=116.90 Aligned_cols=157 Identities=14% Similarity=0.125 Sum_probs=109.2
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc-ccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT-GLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~-~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
+||||||+|.||..++++|+++|++ |+.+++-..... .....+. ...+++++.+|++|.+++.++++.. ++
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~--V~~id~~~~~~~~~~~~~~~-~~~~~~~i~~Di~~~~~l~~~~~~~-----~~ 73 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGID--LIVFDNLSRKGATDNLHWLS-SLGNFEFVHGDIRNKNDVTRLITKY-----MP 73 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCE--EEEEECCCSTTHHHHHHHHH-TTCCCEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCE--EEEEECCCcccchhHHHHhh-ccCCcEEEEcccCCHHHHHHHHHhc-----CC
Confidence 5899999999999999999999987 777765332221 1111111 1357899999999999999988865 68
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC---
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG--- 185 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~--- 185 (282)
|++||+|+... . + ...++....+++|+.|+.++++++...-.. ..+++.|+......
T Consensus 74 d~Vih~aa~~~-------~-~---~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~---------~~i~~sS~~~~~~~~~~ 133 (338)
T d1orra_ 74 DSCFHLAGQVA-------M-T---TSIDNPCMDFEINVGGTLNLLEAVRQYNSN---------CNIIYSSTNKVYGDLEQ 133 (338)
T ss_dssp SEEEECCCCCC-------H-H---HHHHCHHHHHHHHHHHHHHHHHHHHHHCTT---------CEEEEEEEGGGGTTCTT
T ss_pred ceEEeeccccc-------c-c---ccccChHHHHHHHHHHHHHHHHhhhccccc---------ccccccccccccccccc
Confidence 99999999763 1 1 112334577899999999999987654322 14554444321111
Q ss_pred ---------------------CCCCCCcccchhhHHHHHHHHHHHHHHhc
Q 023441 186 ---------------------DNRLGGWHSYRASKAALNQLTKSVSVEFG 214 (282)
Q Consensus 186 ---------------------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~ 214 (282)
..+......|+.+|...+.+.....+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~ 183 (338)
T d1orra_ 134 YKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFG 183 (338)
T ss_dssp SCEEECSSCEEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccCcccCCccccccccccccchhhhhhhhhhhccC
Confidence 01112346789999999999888888774
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.3e-13 Score=117.43 Aligned_cols=154 Identities=12% Similarity=-0.008 Sum_probs=113.8
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
.|+||||||+|.||.+++++|+++|.. +++.++.. .+|+.|.+.+.+++..- +
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~--vi~~~~~~--------------------~~~~~~~~~~~~~~~~~-----~ 54 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDV--ELVLRTRD--------------------ELNLLDSRAVHDFFASE-----R 54 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTE--EEECCCTT--------------------TCCTTCHHHHHHHHHHH-----C
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCE--EEEecCch--------------------hccccCHHHHHHHHhhc-----C
Confidence 478999999999999999999999986 65543321 15899999888877642 7
Q ss_pred ccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCC
Q 023441 108 LNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDN 187 (282)
Q Consensus 108 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~ 187 (282)
+|.++|+++... ... .......+.+++|+.++.++++++...-. .++|++||........
T Consensus 55 ~d~v~~~a~~~~-------~~~---~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v----------~~~i~~SS~~vyg~~~ 114 (315)
T d1e6ua_ 55 IDQVYLAAAKVG-------GIV---ANNTYPADFIYQNMMIESNIIHAAHQNDV----------NKLLFLGSSCIYPKLA 114 (315)
T ss_dssp CSEEEECCCCCC-------CHH---HHHHCHHHHHHHHHHHHHHHHHHHHHTTC----------CEEEEECCGGGSCTTC
T ss_pred CCEEEEcchhcc-------ccc---cchhhHHHHHHHHHHHHHHHHHHHHHcCC----------CEEEEECCceEcCCCC
Confidence 999999998753 111 12233455678999999999998865422 2789999977543211
Q ss_pred -------------CCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC
Q 023441 188 -------------RLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233 (282)
Q Consensus 188 -------------~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~ 233 (282)
+.+....|+.+|.+.+.+++.+.++. ++++..+.|+.+..|
T Consensus 115 ~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gl~~~ilR~~~vyGp 168 (315)
T d1e6ua_ 115 KQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY-----GRDYRSVMPTNLYGP 168 (315)
T ss_dssp CSSBCGGGTTSSCCCGGGHHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECEEEST
T ss_pred CCCccCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh-----CCCEEEEeeccEECC
Confidence 11223469999999999999998877 688888899887665
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.42 E-value=2.8e-12 Score=112.20 Aligned_cols=173 Identities=14% Similarity=0.085 Sum_probs=118.4
Q ss_pred cEEEEecCCCchhHHHHHHHHh-cCCCcEEEEeecCC---------Ccccccccccc--------cCCCceeEEEeeCCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLE-KNDKGCVIATCRNP---------NGATGLLDLKN--------RFPERLDVLQLDLTV 90 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~-~G~~~~vi~~~r~~---------~~~~~~~~~~~--------~~~~~v~~~~~Dls~ 90 (282)
-+||||||+|-||..++++|++ .|++ |+++++-. +..+....... .....+.++.+|++|
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~~--V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNHS--VVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCE--EEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCCE--EEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence 4699999999999999999987 5666 88876411 11111111110 112368899999999
Q ss_pred hhHHHHHHHHHHHHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccc
Q 023441 91 ESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERD 170 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~ 170 (282)
.+.+++++.. ..++|+++|+|+... .. ...+.....+.+|+.++.+++..+...-.+
T Consensus 81 ~~~l~~~~~~----~~~~d~ViH~Aa~~~-------~~----~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~-------- 137 (383)
T d1gy8a_ 81 EDFLNGVFTR----HGPIDAVVHMCAFLA-------VG----ESVRDPLKYYDNNVVGILRLLQAMLLHKCD-------- 137 (383)
T ss_dssp HHHHHHHHHH----SCCCCEEEECCCCCC-------HH----HHHHCHHHHHHHHHHHHHHHHHHHHHTTCC--------
T ss_pred HHHhhhhhhc----cceeehhhccccccc-------cc----ccccccccccccccccccccchhhhccCCc--------
Confidence 9988887764 357999999999763 11 112344567889999999999887754322
Q ss_pred eeEEEEeeccccccC---------------CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCC
Q 023441 171 VAVVANLSARVGSIG---------------DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTD 233 (282)
Q Consensus 171 ~~~iv~~ss~~~~~~---------------~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~ 233 (282)
.++++++...... +.+..+...|+.+|...+.+++.+...+ ++.+.++.|+.+..+
T Consensus 138 --~~~~~~s~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~-----gl~~~~lR~~~vyG~ 208 (383)
T d1gy8a_ 138 --KIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY-----GIKGICLRYFNACGA 208 (383)
T ss_dssp --EEEEEEEGGGTBSCCC-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEECEEECC
T ss_pred --ccccccccccccccccccccccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHh-----CCCEEEEecceeecc
Confidence 5555555433211 1122345779999999999999988876 678888888877554
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.29 E-value=7.3e-12 Score=100.56 Aligned_cols=181 Identities=16% Similarity=0.046 Sum_probs=114.2
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|++|||||||.||++++++|.++|....|+...|+..... .++ ..+..|..++.. ...+.+
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~----------~~~---~~~~~d~~~~~~------~~~~~~ 63 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH----------PRL---DNPVGPLAELLP------QLDGSI 63 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC----------TTE---ECCBSCHHHHGG------GCCSCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc----------ccc---cccccchhhhhh------ccccch
Confidence 8999999999999999999999998655777777553311 122 334444433321 223569
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCCCC
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGDNR 188 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~~~ 188 (282)
|.+++++|... .. ...-.....+|+.++.++.+.+...-. .+++++|+..+..
T Consensus 64 d~vi~~~g~~~-------~~------~~~~~~~~~~~~~~~~~~~~~a~~~~v----------~~~i~~Ss~~~~~---- 116 (212)
T d2a35a1 64 DTAFCCLGTTI-------KE------AGSEEAFRAVDFDLPLAVGKRALEMGA----------RHYLVVSALGADA---- 116 (212)
T ss_dssp SEEEECCCCCH-------HH------HSSHHHHHHHHTHHHHHHHHHHHHTTC----------CEEEEECCTTCCT----
T ss_pred heeeeeeeeec-------cc------cccccccccchhhhhhhcccccccccc----------ccccccccccccc----
Confidence 99999998752 11 112235677888898888887654322 2889999876542
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcccccC---CCC-----C--CCCChHHHHHHHH
Q 023441 189 LGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRN---VPE-----G--KLFTKEFSVQKLL 258 (282)
Q Consensus 189 ~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~---~~~-----~--~~~~~~~~a~~~~ 258 (282)
.....|..+|...+...+ ..+ --+...+.|+.+..+........ .+. . +....+++|++++
T Consensus 117 -~~~~~y~~~K~~~E~~l~-------~~~-~~~~~I~Rp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~DvA~ai~ 187 (212)
T d2a35a1 117 -KSSIFYNRVKGELEQALQ-------EQG-WPQLTIARPSLLFGPREEFRLAEILAAPIARILPGKYHGIEACDLARALW 187 (212)
T ss_dssp -TCSSHHHHHHHHHHHHHT-------TSC-CSEEEEEECCSEESTTSCEEGGGGTTCCCC----CHHHHHHHHHHHHHHH
T ss_pred -ccccchhHHHHHHhhhcc-------ccc-cccceeeCCcceeCCcccccHHHHHHHHHhhccCCCCcEEEHHHHHHHHH
Confidence 234579999987765433 221 12466679999876643311110 000 1 1145689999999
Q ss_pred HHHhhc
Q 023441 259 NIINNI 264 (282)
Q Consensus 259 ~~~~~~ 264 (282)
.++...
T Consensus 188 ~~~~~~ 193 (212)
T d2a35a1 188 RLALEE 193 (212)
T ss_dssp HHHTCC
T ss_pred HHHcCC
Confidence 988653
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.23 E-value=5.4e-11 Score=100.16 Aligned_cols=81 Identities=12% Similarity=0.045 Sum_probs=62.1
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc--cccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG--LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~--~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++||||||||.||++++++|+++|.+ |+++.|+...... ...........+.++++|++|.+++.+++.
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~--V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~------- 74 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHP--TYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK------- 74 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCC--EEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT-------
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCE--EEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhcc-------
Confidence 56999999999999999999999988 8888997654322 111111113478999999999988877665
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
..+.++++++..
T Consensus 75 ~~~~~~~~~~~~ 86 (312)
T d1qyda_ 75 QVDVVISALAGG 86 (312)
T ss_dssp TCSEEEECCCCS
T ss_pred Ccchhhhhhhhc
Confidence 578888888754
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.22 E-value=2.1e-10 Score=95.31 Aligned_cols=188 Identities=20% Similarity=0.169 Sum_probs=121.9
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++|||||||.||.+++++|.++|++ |+..+|+. +|++|.+++++++++. ++|
T Consensus 3 KIlItGasGfiG~~l~~~L~~~g~~--Vi~~~r~~---------------------~D~~d~~~~~~~l~~~-----~~d 54 (281)
T d1vl0a_ 3 KILITGANGQLGREIQKQLKGKNVE--VIPTDVQD---------------------LDITNVLAVNKFFNEK-----KPN 54 (281)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSEE--EEEECTTT---------------------CCTTCHHHHHHHHHHH-----CCS
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCE--EEEeechh---------------------ccCCCHHHHHHHHHHc-----CCC
Confidence 4899999999999999999999987 88887742 4899999999888765 789
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC----
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG---- 185 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~---- 185 (282)
+++|+++... .. .........+..|......+......... .++..||......
T Consensus 55 ~vih~a~~~~--------~~---~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-----------~~~~~ss~~v~~~~~~~ 112 (281)
T d1vl0a_ 55 VVINCAAHTA--------VD---KCEEQYDLAYKINAIGPKNLAAAAYSVGA-----------EIVQISTDYVFDGEAKE 112 (281)
T ss_dssp EEEECCCCCC--------HH---HHHHCHHHHHHHHTHHHHHHHHHHHHHTC-----------EEEEEEEGGGSCSCCSS
T ss_pred EEEeeccccc--------cc---cccccchhhcccccccccccccccccccc-----------cccccccceeeeccccc
Confidence 9999998753 11 11223345667787777777766654432 4444444332211
Q ss_pred ----CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCcc-------ccc-------CCCCCCC
Q 023441 186 ----DNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRP-------FQR-------NVPEGKL 247 (282)
Q Consensus 186 ----~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~-------~~~-------~~~~~~~ 247 (282)
..+......|+.+|...+.+.+ +. +.....+.|+.+..+-... ... .......
T Consensus 113 ~~~e~~~~~~~~~~~~~k~~~e~~~~----~~-----~~~~~i~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (281)
T d1vl0a_ 113 PITEFDEVNPQSAYGKTKLEGENFVK----AL-----NPKYYIVRTAWLYGDGNNFVKTMINLGKTHDELKVVHDQVGTP 183 (281)
T ss_dssp CBCTTSCCCCCSHHHHHHHHHHHHHH----HH-----CSSEEEEEECSEESSSSCHHHHHHHHHHHCSEEEEESSCEECC
T ss_pred cccccccccchhhhhhhhhHHHHHHH----Hh-----CCCccccceeEEeCCCcccccchhhhhccCCceeecCCceecc
Confidence 1223455678888877765543 22 3455567898886553220 000 0112245
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCceeecCCcc
Q 023441 248 FTKEFSVQKLLNIINNIKSHDNGKFFAWDGQE 279 (282)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~ 279 (282)
...+++++.+..++.... +|.+....++.
T Consensus 184 i~v~D~~~~~~~~~~~~~---~g~~~~~~~~~ 212 (281)
T d1vl0a_ 184 TSTVDLARVVLKVIDEKN---YGTFHCTCKGI 212 (281)
T ss_dssp EEHHHHHHHHHHHHHHTC---CEEEECCCBSC
T ss_pred chhhhhhhhhhhhhhhcc---cCceeEeCCCc
Confidence 688999999999987643 45554444443
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.15 E-value=3.1e-10 Score=97.72 Aligned_cols=200 Identities=12% Similarity=0.023 Sum_probs=116.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+.|+++||||||.||.+++++|+++|++ |+++.|+..+.... .+.. ...+.++++|+.|..++...+ +.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~--V~~l~R~~~~~~~~-~~~~--~~~v~~~~gD~~d~~~~~~~a------~~ 70 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHH--VRAQVHSLKGLIAE-ELQA--IPNVTLFQGPLLNNVPLMDTL------FE 70 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCC--EEEEESCSCSHHHH-HHHT--STTEEEEESCCTTCHHHHHHH------HT
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCe--EEEEECCcchhhhh-hhcc--cCCCEEEEeeCCCcHHHHHHH------hc
Confidence 4689999999999999999999999998 88899988765321 1111 246899999999976543222 23
Q ss_pred CccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC
Q 023441 107 SLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD 186 (282)
Q Consensus 107 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~ 186 (282)
..|.++++..... . .++....+++.++... +. .+++..||.......
T Consensus 71 ~~~~~~~~~~~~~-------~----------------~~~~~~~~~~~aa~~a----gv------~~~v~~Ss~~~~~~~ 117 (350)
T d1xgka_ 71 GAHLAFINTTSQA-------G----------------DEIAIGKDLADAAKRA----GT------IQHYIYSSMPDHSLY 117 (350)
T ss_dssp TCSEEEECCCSTT-------S----------------CHHHHHHHHHHHHHHH----SC------CSEEEEEECCCGGGT
T ss_pred CCceEEeeccccc-------c----------------hhhhhhhHHHHHHHHh----CC------CceEEEeeccccccC
Confidence 6788877654321 1 1222333444444322 11 145556665443322
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCccccc---------C-----CC-----CCCC
Q 023441 187 NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQR---------N-----VP-----EGKL 247 (282)
Q Consensus 187 ~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~~~~~---------~-----~~-----~~~~ 247 (282)
. ......|..+|...+.+.+. . .+....+.|+.+..++...... . .+ ...+
T Consensus 118 ~-~~~~~~~~~~k~~~~~~~~~-------~--~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (350)
T d1xgka_ 118 G-PWPAVPMWAPKFTVENYVRQ-------L--GLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPW 187 (350)
T ss_dssp S-SCCCCTTTHHHHHHHHHHHT-------S--SSCEEEEEECEEGGGCBSSSCSSCBEEECTTSCEEEEESSCTTSCEEE
T ss_pred C-cccchhhhhhHHHHHHHHHh-------h--ccCceeeeeceeeccccccccccccccccccccceeeecccCCCcceE
Confidence 1 23345566777666554332 1 3455566787764433211000 0 00 0111
Q ss_pred CC-hHHHHHHHHHHHhhcCCCCCCceeecCCccc
Q 023441 248 FT-KEFSVQKLLNIINNIKSHDNGKFFAWDGQEI 280 (282)
Q Consensus 248 ~~-~~~~a~~~~~~~~~~~~~~~g~~~~~d~~~~ 280 (282)
.+ .++++..+..++.+......|..+...+..+
T Consensus 188 i~~~~Dva~~v~~~l~~~~~~~~G~~~~~~g~~~ 221 (350)
T d1xgka_ 188 LDAEHDVGPALLQIFKDGPQKWNGHRIALTFETL 221 (350)
T ss_dssp ECHHHHHHHHHHHHHHHCHHHHTTCEEEECSEEE
T ss_pred EEeHHHHHHHHHHHHhCChhhcCCeEEEEeCCcC
Confidence 23 3689999988887654555777777665543
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.09 E-value=3.8e-10 Score=94.30 Aligned_cols=131 Identities=18% Similarity=0.160 Sum_probs=90.2
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++|||||+|-||.+++++|.++|. ++.+++.... +.+|++|.+.+++++... ++|
T Consensus 2 KILItG~tGfiG~~l~~~L~~~g~---~v~~~~~~~~-----------------~~~Dl~~~~~~~~~i~~~-----~~D 56 (298)
T d1n2sa_ 2 NILLFGKTGQVGWELQRSLAPVGN---LIALDVHSKE-----------------FCGDFSNPKGVAETVRKL-----RPD 56 (298)
T ss_dssp EEEEECTTSHHHHHHHHHTTTTSE---EEEECTTCSS-----------------SCCCTTCHHHHHHHHHHH-----CCS
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC---EEEEECCCcc-----------------ccCcCCCHHHHHHHHHHc-----CCC
Confidence 489999999999999999999885 4444443322 236999999999888765 689
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccC----
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIG---- 185 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~---- 185 (282)
+|||+||... .. ...+.-...+.+|..++.++.+++...- .+++++||......
T Consensus 57 ~Vih~Aa~~~-------~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----------~~~~~~ss~~~~~~~~~~ 114 (298)
T d1n2sa_ 57 VIVNAAAHTA-------VD----KAESEPELAQLLNATSVEAIAKAANETG-----------AWVVHYSTDYVFPGTGDI 114 (298)
T ss_dssp EEEECCCCCC-------HH----HHTTCHHHHHHHHTHHHHHHHHHHTTTT-----------CEEEEEEEGGGSCCCTTC
T ss_pred EEEEeccccc-------cc----ccccCccccccccccccccchhhhhccc-----------cccccccccccccCCCCC
Confidence 9999999763 11 1122334667889999999888875432 25666666543221
Q ss_pred ----CCCCCCcccchhhHHHHHHHHH
Q 023441 186 ----DNRLGGWHSYRASKAALNQLTK 207 (282)
Q Consensus 186 ----~~~~~~~~~Y~~sKa~~~~l~~ 207 (282)
..+......|+.+|...+.+.+
T Consensus 115 ~~~E~~~~~p~~~y~~~k~~~e~~~~ 140 (298)
T d1n2sa_ 115 PWQETDATSPLNVYGKTKLAGEKALQ 140 (298)
T ss_dssp CBCTTSCCCCSSHHHHHHHHHHHHHH
T ss_pred CCccccccCCCchHhhhhhhhhhhHH
Confidence 1222345679999988776544
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.08 E-value=3.1e-10 Score=94.75 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=63.4
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccc---cccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL---DLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~---~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.|+||||||||.||++++++|+++|++ |++++|+........ .........+.++.+|+.+.....+.++
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~--V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----- 75 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHP--TFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK----- 75 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCC--EEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH-----
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCe--EEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhh-----
Confidence 478999999999999999999999998 999999876543311 1111113468899999999988777665
Q ss_pred cCCccEEEECcccC
Q 023441 105 YGSLNLLINASGIL 118 (282)
Q Consensus 105 ~~~id~lv~~ag~~ 118 (282)
..+.++++++..
T Consensus 76 --~~~~vi~~~~~~ 87 (307)
T d1qyca_ 76 --NVDVVISTVGSL 87 (307)
T ss_dssp --TCSEEEECCCGG
T ss_pred --hceeeeeccccc
Confidence 578899988764
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=2.5e-08 Score=83.17 Aligned_cols=194 Identities=13% Similarity=0.029 Sum_probs=112.0
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH--HcCCc
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE--KYGSL 108 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~--~~~~i 108 (282)
||||||+|-||..++++|+++|.+ .|+.+++-... .+..... ..++.+..+.......... .+..+
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~-~V~~~d~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGIT-DILVVDNLKDG-TKFVNLV----------DLNIADYMDKEDFLIQIMAGEEFGDV 69 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCC-CEEEEECCSSG-GGGHHHH----------TSCCSEEEEHHHHHHHHHTTCCCSSC
T ss_pred EEEecCccHHHHHHHHHHHhCCCC-eEEEEECCCCc-chhhccc----------ccchhhhccchHHHHHHhhhhcccch
Confidence 799999999999999999999964 26665432221 1111111 1122222222233333332 33568
Q ss_pred cEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeeccccccCC--
Q 023441 109 NLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVGSIGD-- 186 (282)
Q Consensus 109 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~~~~~-- 186 (282)
++++|.|+... .. ..........|+.+...+...+...-. +.++..|+.......
T Consensus 70 ~~i~~~aa~~~-------~~------~~~~~~~~~~~~~~~~~~l~~~~~~~i----------~~v~~ss~~~~~~~~~~ 126 (307)
T d1eq2a_ 70 EAIFHEGACSS-------TT------EWDGKYMMDNNYQYSKELLHYCLEREI----------PFLYASSAATYGGRTSD 126 (307)
T ss_dssp CEEEECCSCCC-------TT------CCCHHHHHHHTHHHHHHHHHHHHHHTC----------CEEEEEEGGGGTTCCSC
T ss_pred hhhhhhccccc-------cc------ccccccccccccccccccccccccccc----------ccccccccccccccccc
Confidence 99999988653 11 112334567778888887776654432 155555554432211
Q ss_pred -----CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEEecccccCCCCc--------------cccc-------
Q 023441 187 -----NRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSR--------------PFQR------- 240 (282)
Q Consensus 187 -----~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i~Pg~v~t~~~~--------------~~~~------- 240 (282)
.+......|+.+|...+.+++.+..+. ++.+..+.|..+..+... ....
T Consensus 127 ~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-----~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (307)
T d1eq2a_ 127 FIESREYEKPLNVYGYSKFLFDEYVRQILPEA-----NSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLF 201 (307)
T ss_dssp BCSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC-----SSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------
T ss_pred ccccccccccccccccccchhhhhcccccccc-----ccccccccceeEeeccccccccccccccccccccccccceeee
Confidence 122355789999999999988877665 456666677766554221 0000
Q ss_pred ---CCCCCCCCChHHHHHHHHHHHhhc
Q 023441 241 ---NVPEGKLFTKEFSVQKLLNIINNI 264 (282)
Q Consensus 241 ---~~~~~~~~~~~~~a~~~~~~~~~~ 264 (282)
..........++++.++...+...
T Consensus 202 ~g~~~~~r~~~~v~d~~~~~~~~~~~~ 228 (307)
T d1eq2a_ 202 EGSENFKRDFVYVGDVADVNLWFLENG 228 (307)
T ss_dssp ------CBCEEEHHHHHHHHHHHHHHC
T ss_pred cCccceeeeeeecccHHHHHHHHhhhc
Confidence 011123456788899888888754
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.81 E-value=4.2e-13 Score=106.28 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=38.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN 75 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~ 75 (282)
++.|+||+|++|+++|+.|++.|++ |++.+|++++++.+.+.+.
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~--V~l~~R~~e~~~~l~~~i~ 45 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHE--IVVGSRREEKAEAKAAEYR 45 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCE--EEEEESSHHHHHHHHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHH
Confidence 4678899999999999999999998 9999999988877665554
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=98.18 E-value=2.1e-06 Score=66.41 Aligned_cols=87 Identities=18% Similarity=0.127 Sum_probs=67.9
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC--CceeEEEeeCCChhHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP--ERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~--~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
..+++||+++|.|+ ||.|++++..|++.|.+ .+++..|+.+..++...+..+.+ ........|+.+.+++.....
T Consensus 13 ~~~l~~k~vlIlGa-GGaarai~~al~~~g~~-~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 89 (182)
T d1vi2a1 13 GFDIKGKTMVLLGA-GGASTAIGAQGAIEGLK-EIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALA- 89 (182)
T ss_dssp TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHH-
T ss_pred CCCcCCCEEEEECC-cHHHHHHHHHHhhcCCc-eEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhc-
Confidence 45789999999999 69999999999999986 79999999988776544433222 234566889999887765554
Q ss_pred HHHHcCCccEEEECcccC
Q 023441 101 IKEKYGSLNLLINASGIL 118 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~ 118 (282)
..|++||++...
T Consensus 90 ------~~diiIN~Tp~G 101 (182)
T d1vi2a1 90 ------SADILTNGTKVG 101 (182)
T ss_dssp ------TCSEEEECSSTT
T ss_pred ------ccceeccccCCc
Confidence 689999999765
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.72 E-value=2.3e-05 Score=58.89 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=56.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
-+++++++||.|+ |++|..+++.|...|.. .+.++.|+.++.+.+.... +.+ . .+.+++.+.+.
T Consensus 20 ~~l~~~~ilviGa-G~~g~~v~~~L~~~g~~-~i~v~nRt~~ka~~l~~~~---~~~--~-----~~~~~~~~~l~---- 83 (159)
T d1gpja2 20 GSLHDKTVLVVGA-GEMGKTVAKSLVDRGVR-AVLVANRTYERAVELARDL---GGE--A-----VRFDELVDHLA---- 83 (159)
T ss_dssp SCCTTCEEEEESC-CHHHHHHHHHHHHHCCS-EEEEECSSHHHHHHHHHHH---TCE--E-----CCGGGHHHHHH----
T ss_pred CCcccCeEEEECC-CHHHHHHHHHHHhcCCc-EEEEEcCcHHHHHHHHHhh---hcc--c-----ccchhHHHHhc----
Confidence 3689999999998 99999999999999985 5889999987766544433 222 1 22344444333
Q ss_pred HcCCccEEEECcccC
Q 023441 104 KYGSLNLLINASGIL 118 (282)
Q Consensus 104 ~~~~id~lv~~ag~~ 118 (282)
..|++|++++..
T Consensus 84 ---~~Divi~atss~ 95 (159)
T d1gpja2 84 ---RSDVVVSATAAP 95 (159)
T ss_dssp ---TCSEEEECCSSS
T ss_pred ---cCCEEEEecCCC
Confidence 689999999864
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=2.6e-05 Score=59.39 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=54.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+|+++||+||+|++|...++-....|++ |+.+++++++.+.+. +.+..-. .|.++.+-.+++.+.... .
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~--vi~~~~~~~~~~~~~----~~Ga~~v---i~~~~~~~~~~i~~~t~~--~ 96 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLK--ILGTAGTEEGQKIVL----QNGAHEV---FNHREVNYIDKIKKYVGE--K 96 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHH----HTTCSEE---EETTSTTHHHHHHHHHCT--T
T ss_pred CCCEEEEEeccccccccccccccccCcc--ccccccccccccccc----ccCcccc---cccccccHHHHhhhhhcc--C
Confidence 5899999999999999999888888987 888888765544332 2344322 377765533333222211 2
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.+.|.
T Consensus 97 g~d~v~d~~g~ 107 (174)
T d1yb5a2 97 GIDIIIEMLAN 107 (174)
T ss_dssp CEEEEEESCHH
T ss_pred CceEEeecccH
Confidence 59999999873
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.69 E-value=2e-05 Score=60.57 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=54.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+|+++||+||+|++|.+.++-....|++ |+.+++++++.+. +.+.+.... .|-.+++..+++.+.... .
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~--vi~~~~~~~~~~~----~~~~Ga~~v---i~~~~~~~~~~~~~~~~~--~ 97 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCK--VVGAAGSDEKIAY----LKQIGFDAA---FNYKTVNSLEEALKKASP--D 97 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCE--EEEEESSHHHHHH----HHHTTCSEE---EETTSCSCHHHHHHHHCT--T
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCE--EEEeCCCHHHHHH----HHhhhhhhh---cccccccHHHHHHHHhhc--C
Confidence 5899999999999999999777778987 9999988765433 223344333 244554444443333221 3
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.+.|.
T Consensus 98 Gvd~v~D~vG~ 108 (182)
T d1v3va2 98 GYDCYFDNVGG 108 (182)
T ss_dssp CEEEEEESSCH
T ss_pred CCceeEEecCc
Confidence 69999999984
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.69 E-value=4.1e-05 Score=58.04 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=55.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.+|+++|.|| |.+|..+|+.|+++|++ |++.+|+.++++.+.+.. ........+..+.......+.
T Consensus 1 ~~K~IliiGa-G~~G~~~a~~L~~~g~~--V~v~dr~~~~a~~l~~~~----~~~~~~~~~~~~~~~~~~~i~------- 66 (182)
T d1e5qa1 1 ATKSVLMLGS-GFVTRPTLDVLTDSGIK--VTVACRTLESAKKLSAGV----QHSTPISLDVNDDAALDAEVA------- 66 (182)
T ss_dssp CCCEEEEECC-STTHHHHHHHHHTTTCE--EEEEESCHHHHHHHHTTC----TTEEEEECCTTCHHHHHHHHT-------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCE--EEEEECChHHHHHHHhcc----cccccccccccchhhhHhhhh-------
Confidence 3699999987 99999999999999987 999999999877655433 234445556666555544443
Q ss_pred CccEEEECcc
Q 023441 107 SLNLLINASG 116 (282)
Q Consensus 107 ~id~lv~~ag 116 (282)
..|.++.+..
T Consensus 67 ~~~~~i~~~~ 76 (182)
T d1e5qa1 67 KHDLVISLIP 76 (182)
T ss_dssp TSSEEEECSC
T ss_pred ccceeEeecc
Confidence 4566665543
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=9.9e-05 Score=58.47 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=55.2
Q ss_pred ccccCcEEEEecC----------------CCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEee
Q 023441 24 VKWKGGVSLVQGA----------------SRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLD 87 (282)
Q Consensus 24 ~~~~gk~vlItGa----------------s~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~D 87 (282)
-+|+|+++|||+| ||..|.++|+++.++|++ |+++....... .+..+..+ .
T Consensus 2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~--V~li~g~~~~~---------~p~~~~~~--~ 68 (223)
T d1u7za_ 2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGAN--VTLVSGPVSLP---------TPPFVKRV--D 68 (223)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCE--EEEEECSCCCC---------CCTTEEEE--E
T ss_pred cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCc--hhhhhcccccC---------cccccccc--e
Confidence 4789999999965 688999999999999998 66665544321 12234433 3
Q ss_pred CCChhHHHHHHHHHHHHcCCccEEEECcccCC
Q 023441 88 LTVESTIEASAKSIKEKYGSLNLLINASGILS 119 (282)
Q Consensus 88 ls~~~~~~~~~~~~~~~~~~id~lv~~ag~~~ 119 (282)
+...+++.+.+ .+.+...|++|++|++..
T Consensus 69 ~~t~~~m~~~~---~~~~~~~D~~i~aAAvsD 97 (223)
T d1u7za_ 69 VMTALEMEAAV---NASVQQQNIFIGCAAVAD 97 (223)
T ss_dssp CCSHHHHHHHH---HHHGGGCSEEEECCBCCS
T ss_pred ehhhHHHHHHH---HhhhccceeEeeeechhh
Confidence 34445554444 444456899999999885
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=3.4e-05 Score=58.61 Aligned_cols=78 Identities=24% Similarity=0.173 Sum_probs=56.7
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..+++||+++|.|+ ||-+++++..|.+.|.+ |.+..|+.++.+++.+...+.. .+..+ +..+.
T Consensus 13 ~~~~~~k~vlIlGa-GGaarai~~al~~~g~~--i~I~nRt~~ka~~l~~~~~~~~-~~~~~--~~~~~----------- 75 (170)
T d1nyta1 13 SFIRPGLRILLIGA-GGASRGVLLPLLSLDCA--VTITNRTVSRAEELAKLFAHTG-SIQAL--SMDEL----------- 75 (170)
T ss_dssp TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSSHHHHHHHHHHTGGGS-SEEEC--CSGGG-----------
T ss_pred CCCCCCCEEEEECC-cHHHHHHHHHhcccceE--EEeccchHHHHHHHHHHHhhcc-ccccc--ccccc-----------
Confidence 35778999999997 78899999999999986 9999999988877665554322 22222 22211
Q ss_pred HHcCCccEEEECcccC
Q 023441 103 EKYGSLNLLINASGIL 118 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~ 118 (282)
...+.|++||++...
T Consensus 76 -~~~~~dliIN~Tp~G 90 (170)
T d1nyta1 76 -EGHEFDLIINATSSG 90 (170)
T ss_dssp -TTCCCSEEEECCSCG
T ss_pred -cccccceeecccccC
Confidence 113689999998665
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.53 E-value=9.9e-05 Score=55.70 Aligned_cols=82 Identities=23% Similarity=0.237 Sum_probs=56.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+++|+| +|++|...++.+...|++ |+++++++++++.+.++ +.... +..|-. .++.....+.+.+..|
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~--vi~v~~~~~r~~~a~~~----ga~~~-~~~~~~-~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGAF--VVCTARSPRRLEVAKNC----GADVT-LVVDPA-KEEESSIIERIRSAIG 96 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHT----TCSEE-EECCTT-TSCHHHHHHHHHHHSS
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhccc--ccccchHHHHHHHHHHc----CCcEE-Eecccc-ccccchhhhhhhcccc
Confidence 478999997 689999999888888976 99999998876644443 33322 222322 2334444555555554
Q ss_pred -CccEEEECccc
Q 023441 107 -SLNLLINASGI 117 (282)
Q Consensus 107 -~id~lv~~ag~ 117 (282)
.+|++|.++|.
T Consensus 97 ~g~D~vid~~g~ 108 (170)
T d1e3ja2 97 DLPNVTIDCSGN 108 (170)
T ss_dssp SCCSEEEECSCC
T ss_pred cCCceeeecCCC
Confidence 59999999986
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=97.49 E-value=5.3e-05 Score=58.48 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=55.5
Q ss_pred CcEEEE-ecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH-Hc
Q 023441 28 GGVSLV-QGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE-KY 105 (282)
Q Consensus 28 gk~vlI-tGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~-~~ 105 (282)
|++++| +||+|++|.+.++-....|++ |+.+.|+.+..+...+.+.+.+....+. -|-.+..+..+.+.++.. ..
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~--vI~~v~~~~~~~~~~~~~~~lGad~vi~-~~~~~~~~~~~~v~~~~~~~g 105 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLNFN--SISVIRDRPNLDEVVASLKELGATQVIT-EDQNNSREFGPTIKEWIKQSG 105 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHTCE--EEEEECCCTTHHHHHHHHHHHTCSEEEE-HHHHHCGGGHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcCCe--EEEEEecccccchHHhhhhhccccEEEe-ccccchhHHHHHHHHHHhhcc
Confidence 655555 699999999988666667987 8988888877666555555555543322 221222333334444433 33
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+++|+++.+.|.
T Consensus 106 ~~vdvv~D~vg~ 117 (189)
T d1gu7a2 106 GEAKLALNCVGG 117 (189)
T ss_dssp CCEEEEEESSCH
T ss_pred CCceEEEECCCc
Confidence 569999999874
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=6.2e-05 Score=57.35 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=56.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|+||++++|...++-....|++ |+..++++++.+.+.++ |... ..|-++++-.+++ .++-. -.
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~--Vi~~~~s~~k~~~~~~l----Ga~~---vi~~~~~d~~~~v-~~~t~-g~ 96 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAK--LIGTVGTAQKAQSALKA----GAWQ---VINYREEDLVERL-KEITG-GK 96 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCE--EEEEESSHHHHHHHHHH----TCSE---EEETTTSCHHHHH-HHHTT-TC
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCe--EeecccchHHHHHHHhc----CCeE---EEECCCCCHHHHH-HHHhC-CC
Confidence 4899999999999999999877778987 99999998887654433 3332 2477765533333 22211 13
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.+.|.
T Consensus 97 g~d~v~d~~g~ 107 (179)
T d1qora2 97 KVRVVYDSVGR 107 (179)
T ss_dssp CEEEEEECSCG
T ss_pred CeEEEEeCccH
Confidence 59999998874
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.43 E-value=7.5e-05 Score=57.07 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=53.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc-
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY- 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~- 105 (282)
+|+++||+||+|++|...++.+...|++ ++.++++.++.+. +.+.+.... .|-.+++-.+ ++++..
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~--vi~~~~~~~~~~~----l~~~Ga~~v---i~~~~~~~~~----~v~~~t~ 91 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGAR--IYTTAGSDAKREM----LSRLGVEYV---GDSRSVDFAD----EILELTD 91 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCE--EEEEESSHHHHHH----HHTTCCSEE---EETTCSTHHH----HHHHHTT
T ss_pred CCCEEEEECCCCCcccccchhhcccccc--ceeeecccccccc----ccccccccc---ccCCccCHHH----HHHHHhC
Confidence 4899999999999999999877778987 8888887655432 333344322 3555544333 233322
Q ss_pred -CCccEEEECccc
Q 023441 106 -GSLNLLINASGI 117 (282)
Q Consensus 106 -~~id~lv~~ag~ 117 (282)
.++|+++.+.|.
T Consensus 92 ~~g~d~v~d~~g~ 104 (183)
T d1pqwa_ 92 GYGVDVVLNSLAG 104 (183)
T ss_dssp TCCEEEEEECCCT
T ss_pred CCCEEEEEecccc
Confidence 259999999984
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.32 E-value=0.00025 Score=53.60 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=50.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|+||+|++|...++-....|++ |+.+++++++.+.+.+ .+.... .|..+. . .+.. ...
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~--vi~~~~~~~~~~~~~~----lGa~~~---i~~~~~--~----~~~~-~~~ 90 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLR--VLAAASRPEKLALPLA----LGAEEA---ATYAEV--P----ERAK-AWG 90 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCE--EEEEESSGGGSHHHHH----TTCSEE---EEGGGH--H----HHHH-HTT
T ss_pred CCCEEEEEeccccchhhhhhhhcccccc--cccccccccccccccc----ccccee---eehhhh--h----hhhh-ccc
Confidence 6899999999999999998777778987 8888888766554333 233322 243321 1 2222 234
Q ss_pred CccEEEECcc
Q 023441 107 SLNLLINASG 116 (282)
Q Consensus 107 ~id~lv~~ag 116 (282)
.+|+++.+.|
T Consensus 91 g~D~v~d~~G 100 (171)
T d1iz0a2 91 GLDLVLEVRG 100 (171)
T ss_dssp SEEEEEECSC
T ss_pred cccccccccc
Confidence 6999999876
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.28 E-value=0.00011 Score=47.83 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=35.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
+|+++||+||+||+|...++.+...|++ |+.+.+++++.+.
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~--Vi~~t~s~~k~~~ 71 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQ--VVAVSGRESTHEY 71 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCC--EEEEESCGGGHHH
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCe--EEEEECCHHHHHH
Confidence 6889999999999999999877778988 9999988877653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.27 E-value=0.00033 Score=53.37 Aligned_cols=82 Identities=22% Similarity=0.230 Sum_probs=55.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc-
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY- 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~- 105 (282)
.|.++||+|+ |++|...+..+...|+. .|+++++++++++.+.+ .|.... .|.++.+ ..+..+++.+..
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~-~Vi~~~~~~~~~~~a~~----lGa~~v---i~~~~~~-~~~~~~~i~~~~~ 97 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAE-NVIVIAGSPNRLKLAEE----IGADLT---LNRRETS-VEERRKAIMDITH 97 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBS-EEEEEESCHHHHHHHHH----TTCSEE---EETTTSC-HHHHHHHHHHHTT
T ss_pred CCCEEEEECC-Cccchhheecccccccc-ccccccccccccccccc----ccceEE---Eeccccc-hHHHHHHHHHhhC
Confidence 5899999997 89999999888888984 59999998887654433 243322 2544432 333334444433
Q ss_pred -CCccEEEECcccC
Q 023441 106 -GSLNLLINASGIL 118 (282)
Q Consensus 106 -~~id~lv~~ag~~ 118 (282)
..+|++|.++|..
T Consensus 98 ~~g~Dvvid~vG~~ 111 (182)
T d1vj0a2 98 GRGADFILEATGDS 111 (182)
T ss_dssp TSCEEEEEECSSCT
T ss_pred CCCceEEeecCCch
Confidence 2499999999864
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.24 E-value=0.00014 Score=52.61 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=56.2
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
+++|.|+ |.+|+.+++.|.++|.. |++++++++..+.+.+.. .+.++..|.+|++.++++- ..+.|
T Consensus 2 ~IvI~G~-G~~G~~la~~L~~~g~~--v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~~------i~~a~ 67 (132)
T d1lssa_ 2 YIIIAGI-GRVGYTLAKSLSEKGHD--IVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAG------IEDAD 67 (132)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTT------TTTCS
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCC--cceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhcC------hhhhh
Confidence 5788998 99999999999999988 999999987766543321 4678999999999777651 13577
Q ss_pred EEEECcc
Q 023441 110 LLINASG 116 (282)
Q Consensus 110 ~lv~~ag 116 (282)
.++....
T Consensus 68 ~vv~~t~ 74 (132)
T d1lssa_ 68 MYIAVTG 74 (132)
T ss_dssp EEEECCS
T ss_pred hhcccCC
Confidence 7776544
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.23 E-value=0.00015 Score=55.19 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=51.8
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
-.|.++||+||+||.|...++-....|++ |+..++++++.+.+.++ +....+ |-++. ..+.+... .-
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~--Viat~~s~~k~~~~~~l----Ga~~vi---~~~~~--~~~~~~~~--~~ 96 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYT--VEASTGKAAEHDYLRVL----GAKEVL---AREDV--MAERIRPL--DK 96 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCC--EEEEESCTTCHHHHHHT----TCSEEE---ECC-----------C--CS
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCc--eEEecCchHHHHHHHhc----ccceee---ecchh--HHHHHHHh--hc
Confidence 35889999999999999998776678998 99999998886554433 443222 32221 11111111 11
Q ss_pred CCccEEEECcccC
Q 023441 106 GSLNLLINASGIL 118 (282)
Q Consensus 106 ~~id~lv~~ag~~ 118 (282)
+++|+++.+.|..
T Consensus 97 ~gvD~vid~vgg~ 109 (176)
T d1xa0a2 97 QRWAAAVDPVGGR 109 (176)
T ss_dssp CCEEEEEECSTTT
T ss_pred cCcCEEEEcCCch
Confidence 4699999999853
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.00063 Score=51.15 Aligned_cols=82 Identities=21% Similarity=0.201 Sum_probs=55.2
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+++|.|+ |++|...+..+...|+. +|++.++++.+++.+.+ .+... ++..+-.+..+..+ .+....+
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~-~Vi~~d~~~~rl~~a~~----~Ga~~-~~~~~~~~~~~~~~---~~~~~~g 95 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAA-QVVVTDLSATRLSKAKE----IGADL-VLQISKESPQEIAR---KVEGQLG 95 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEEESCHHHHHHHHH----TTCSE-EEECSSCCHHHHHH---HHHHHHT
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCc-eEEeccCCHHHHHHHHH----hCCcc-cccccccccccccc---cccccCC
Confidence 4789999987 99999999888889985 59999998877664333 23332 22223333444433 3333333
Q ss_pred -CccEEEECcccC
Q 023441 107 -SLNLLINASGIL 118 (282)
Q Consensus 107 -~id~lv~~ag~~ 118 (282)
.+|++|.++|..
T Consensus 96 ~g~Dvvid~~G~~ 108 (171)
T d1pl8a2 96 CKPEVTIECTGAE 108 (171)
T ss_dssp SCCSEEEECSCCH
T ss_pred CCceEEEeccCCc
Confidence 699999999963
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.21 E-value=0.00027 Score=53.16 Aligned_cols=82 Identities=10% Similarity=0.101 Sum_probs=55.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+++|+|++|++|...+..+...|.. .|+..++++++.+...+ .+... ..|.++.+..++..+... -+
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~-~V~~~~~~~~~~~~~~~----~Ga~~---~i~~~~~~~~~~~~~~~~--~~ 96 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKR----AGADY---VINASMQDPLAEIRRITE--SK 96 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHH----HTCSE---EEETTTSCHHHHHHHHTT--TS
T ss_pred CCCEEEEEeccccceeeeeecccccccc-cccccccchhhHHHHHH----cCCce---eeccCCcCHHHHHHHHhh--cc
Confidence 4789999999999999999888888874 58888888776554333 23332 235555444444332221 13
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
.+|+++.++|..
T Consensus 97 ~~d~vid~~g~~ 108 (170)
T d1jvba2 97 GVDAVIDLNNSE 108 (170)
T ss_dssp CEEEEEESCCCH
T ss_pred cchhhhcccccc
Confidence 599999999863
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=0.00058 Score=45.97 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=49.8
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+++||+++|.|. |.-|.++|+.|+++|++ |++.+.+...... +.+. ....+...+.. ... +
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~--v~~~D~~~~~~~~--~~~~---~~~~~~~~~~~-~~~----~------ 62 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVT--PRVMDTRMTPPGL--DKLP---EAVERHTGSLN-DEW----L------ 62 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCC--CEEEESSSSCTTG--GGSC---TTSCEEESBCC-HHH----H------
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCE--EEEeeCCcCchhH--HHHh---hccceeecccc-hhh----h------
Confidence 689999999988 66799999999999998 8888776553321 1221 12333333321 111 1
Q ss_pred cCCccEEEECcccCC
Q 023441 105 YGSLNLLINASGILS 119 (282)
Q Consensus 105 ~~~id~lv~~ag~~~ 119 (282)
..+|.+|...|+..
T Consensus 63 -~~~d~vi~SPGi~~ 76 (93)
T d2jfga1 63 -MAADLIVASPGIAL 76 (93)
T ss_dssp -HHCSEEEECTTSCT
T ss_pred -ccCCEEEECCCCCC
Confidence 25799999999853
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.19 E-value=0.00019 Score=54.30 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=55.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+++||+++|.|+ ||.+++++..|.+.+.+ |++..|+.++++.+.+..... ..+..+..|-.+
T Consensus 14 ~~~~~k~vlIlGa-GGaarai~~aL~~~~~~--i~I~nR~~~~a~~l~~~~~~~-~~~~~~~~~~~~------------- 76 (171)
T d1p77a1 14 WLRPNQHVLILGA-GGATKGVLLPLLQAQQN--IVLANRTFSKTKELAERFQPY-GNIQAVSMDSIP------------- 76 (171)
T ss_dssp CCCTTCEEEEECC-SHHHHTTHHHHHHTTCE--EEEEESSHHHHHHHHHHHGGG-SCEEEEEGGGCC-------------
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHHcccCce--eeeccchHHHHHHHHHHHhhc-cccchhhhcccc-------------
Confidence 4678999999977 77799999999986654 999999998887766655432 234444433221
Q ss_pred HcCCccEEEECcccCC
Q 023441 104 KYGSLNLLINASGILS 119 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~ 119 (282)
+...|++||++....
T Consensus 77 -~~~~diiIN~tp~g~ 91 (171)
T d1p77a1 77 -LQTYDLVINATSAGL 91 (171)
T ss_dssp -CSCCSEEEECCCC--
T ss_pred -ccccceeeecccccc
Confidence 247899999998753
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=97.12 E-value=0.00048 Score=52.08 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=55.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCCh-hHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE-STIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~-~~~~~~~~~~~~~~ 105 (282)
.|.+|+|.|+ +|+|...+.++...|+. +|+..++++++.+...+. +..-. .|..+. +.+.+.......
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~-~Vi~~~~~~~k~~~a~~~----Ga~~~---i~~~~~~~~~~~~~~~~~~-- 96 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAA-RIIGVDINKDKFAKAKEV----GATEC---VNPQDYKKPIQEVLTEMSN-- 96 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEECSCGGGHHHHHHT----TCSEE---ECGGGCSSCHHHHHHHHTT--
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCc-eEEeecCcHHHHHHHHHh----CCeeE---EecCCchhHHHHHHHHHhc--
Confidence 5889999999 78999999999999975 699999999887654433 22222 222222 233333333322
Q ss_pred CCccEEEECcccC
Q 023441 106 GSLNLLINASGIL 118 (282)
Q Consensus 106 ~~id~lv~~ag~~ 118 (282)
+.+|++|.+.|..
T Consensus 97 ~G~D~vid~~G~~ 109 (176)
T d2jhfa2 97 GGVDFSFEVIGRL 109 (176)
T ss_dssp SCBSEEEECSCCH
T ss_pred CCCCEEEecCCch
Confidence 4699999999964
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.09 E-value=0.00027 Score=50.95 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=55.4
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|.++|.|+ |-+|+.+++.|.++|.. |++++.+++..+.+.+. ...++..|.++++.++++- ..+.
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~--vvvid~d~~~~~~~~~~------~~~~~~gd~~~~~~l~~a~------i~~a 65 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHE--VLAVDINEEKVNAYASY------ATHAVIANATEENELLSLG------IRNF 65 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCC--CEEEESCHHHHHHTTTT------CSEEEECCTTCTTHHHHHT------GGGC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCe--EEEecCcHHHHHHHHHh------CCcceeeecccchhhhccC------Cccc
Confidence 67888877 78999999999999998 88889988776544322 2356678999998776641 1256
Q ss_pred cEEEECccc
Q 023441 109 NLLINASGI 117 (282)
Q Consensus 109 d~lv~~ag~ 117 (282)
|.++...+-
T Consensus 66 ~~vi~~~~~ 74 (134)
T d2hmva1 66 EYVIVAIGA 74 (134)
T ss_dssp SEEEECCCS
T ss_pred cEEEEEcCc
Confidence 877777664
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.00 E-value=0.0003 Score=52.95 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=37.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL 73 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~ 73 (282)
++|+++|.|+ ||.+++++..|.+.|.+ .|.+..|+.++.+++.+.
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~-~I~I~nR~~~ka~~L~~~ 60 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFE-KLKIYARNVKTGQYLAAL 60 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCC-CEEEECSCHHHHHHHHHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCC-EEEEecccHHHHHHHHHh
Confidence 5789999988 89999999999999974 489999998877665443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.96 E-value=0.00044 Score=52.28 Aligned_cols=80 Identities=18% Similarity=0.161 Sum_probs=53.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+++|.|+ |++|...+..+...|+. +|++.++++.+++.+.++ +.. ++ .|..+.+ +.+.+.++.. +
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~-~v~~~~~~~~k~~~a~~~----Ga~-~~--i~~~~~~-~~~~i~~~t~--g 95 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGAS-IIIAVDIVESRLELAKQL----GAT-HV--INSKTQD-PVAAIKEITD--G 95 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHH----TCS-EE--EETTTSC-HHHHHHHHTT--S
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccc-eeeeeccHHHHHHHHHHc----CCe-EE--EeCCCcC-HHHHHHHHcC--C
Confidence 5889999997 89999999888888987 566777777665544332 322 22 3555543 3333333322 4
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
++|++|.++|..
T Consensus 96 g~D~vid~~G~~ 107 (174)
T d1f8fa2 96 GVNFALESTGSP 107 (174)
T ss_dssp CEEEEEECSCCH
T ss_pred CCcEEEEcCCcH
Confidence 799999999963
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.91 E-value=0.0013 Score=49.66 Aligned_cols=82 Identities=13% Similarity=0.091 Sum_probs=55.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+++|+|+ ||+|...+..+...|+. +|+.+++++++++...++ +....+ |.++.+...+.+.+... ..
T Consensus 29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~-~Vi~vd~~~~kl~~Ak~~----GA~~~i---n~~~~~~~~~~~~~~~~-g~ 98 (176)
T d1d1ta2 29 PGSTCVVFGL-GGVGLSVIMGCKSAGAS-RIIGIDLNKDKFEKAMAV----GATECI---SPKDSTKPISEVLSEMT-GN 98 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEECSCGGGHHHHHHH----TCSEEE---CGGGCSSCHHHHHHHHH-TS
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCc-eEEEecCcHHHHHHHHhc----CCcEEE---CccccchHHHHHHHHhc-cc
Confidence 5889999986 99999999999999974 699999999987754444 333332 33332222222222222 13
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
.+|+++.+.|..
T Consensus 99 G~d~vi~~~g~~ 110 (176)
T d1d1ta2 99 NVGYTFEVIGHL 110 (176)
T ss_dssp CCCEEEECSCCH
T ss_pred cceEEEEeCCch
Confidence 699999999964
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.90 E-value=0.00031 Score=53.87 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=49.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.+++|||+||+||+|...++-....|++ +|+.+++.+++...+... .+... ..|..+++ +.+.+.++.. .
T Consensus 30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~-~vi~~~~~~e~~~~l~~~---~gad~---vi~~~~~~-~~~~~~~~~~--~ 99 (187)
T d1vj1a2 30 SNQTMVVSGAAGACGSLAGQIGHLLGCS-RVVGICGTQEKCLFLTSE---LGFDA---AVNYKTGN-VAEQLREACP--G 99 (187)
T ss_dssp SCCEEEESSTTSTTGGGHHHHHHHTTCS-EEEEEESSHHHHHHHHHH---SCCSE---EEETTSSC-HHHHHHHHCT--T
T ss_pred CCCEEEEECCCchhhHHHHHHHHHcCCc-ceecccchHHHHhhhhhc---ccceE---Eeeccchh-HHHHHHHHhc--c
Confidence 3589999999999999998665558987 355455554443333322 23332 23555544 3333443332 3
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
.+|+++.+.|.
T Consensus 100 GvDvv~D~vGg 110 (187)
T d1vj1a2 100 GVDVYFDNVGG 110 (187)
T ss_dssp CEEEEEESSCH
T ss_pred CceEEEecCCc
Confidence 59999999984
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.87 E-value=0.0014 Score=49.55 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=53.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCC-hhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV-ESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~-~~~~~~~~~~~~~~~ 105 (282)
.|.+|+|.|+ |+||...+..+...|+. +|++.++++++++...++ +.... .|... .+..++...... .
T Consensus 28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~-~Vi~~d~~~~r~~~a~~~----Ga~~~---i~~~~~~~~~~~~~~~~~--~ 96 (174)
T d1e3ia2 28 PGSTCAVFGL-GCVGLSAIIGCKIAGAS-RIIAIDINGEKFPKAKAL----GATDC---LNPRELDKPVQDVITELT--A 96 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEECSCGGGHHHHHHT----TCSEE---ECGGGCSSCHHHHHHHHH--T
T ss_pred CCCEEEEECC-ChHHHHHHHHHHHhCCc-eeeeeccchHHHHHHHHh----CCCcc---cCCccchhhhhhhHhhhh--c
Confidence 5889999975 99999999998889986 588888888776543333 33322 22222 123333333322 2
Q ss_pred CCccEEEECcccC
Q 023441 106 GSLNLLINASGIL 118 (282)
Q Consensus 106 ~~id~lv~~ag~~ 118 (282)
+.+|++|.|+|..
T Consensus 97 ~G~d~vie~~G~~ 109 (174)
T d1e3ia2 97 GGVDYSLDCAGTA 109 (174)
T ss_dssp SCBSEEEESSCCH
T ss_pred CCCcEEEEecccc
Confidence 4799999999964
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.84 E-value=0.0011 Score=50.08 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=54.9
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhH-HHHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVEST-IEASAKSIKEK 104 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~-~~~~~~~~~~~ 104 (282)
-.|.+++|.|+ ||+|...+..+...|+. +|+..++++++++...+ ++.... .|.++.+. +.+......
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~-~Vi~~d~~~~kl~~a~~----lGa~~~---i~~~~~d~~~~~~~~~~~-- 94 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGAS-RIIGVGTHKDKFPKAIE----LGATEC---LNPKDYDKPIYEVICEKT-- 94 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSCGGGHHHHHH----TTCSEE---ECGGGCSSCHHHHHHHHT--
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCc-eeeccCChHHHHHHHHH----cCCcEE---EcCCCchhHHHHHHHHhc--
Confidence 35889999986 89999999999999985 68999998888764433 243322 24333222 222222221
Q ss_pred cCCccEEEECcccC
Q 023441 105 YGSLNLLINASGIL 118 (282)
Q Consensus 105 ~~~id~lv~~ag~~ 118 (282)
-+.+|++|-++|..
T Consensus 95 ~~G~d~vid~~g~~ 108 (174)
T d1p0fa2 95 NGGVDYAVECAGRI 108 (174)
T ss_dssp TSCBSEEEECSCCH
T ss_pred CCCCcEEEEcCCCc
Confidence 14699999999864
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.82 E-value=0.001 Score=50.03 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=52.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCC-hhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTV-ESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~-~~~~~~~~~~~~~~~ 105 (282)
.|.+++|.|+ +|+|...+..+...|+. +|+..++++++++...++ |..-. .|..+ .+.+.+.+.....
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~-~vi~~~~~~~k~~~ak~l----Ga~~~---i~~~~~~~~~~~~~~~~~~-- 96 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGAS-RIIGVDINKDKFARAKEF----GATEC---INPQDFSKPIQEVLIEMTD-- 96 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSCGGGHHHHHHH----TCSEE---ECGGGCSSCHHHHHHHHTT--
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcC-ceEEEcccHHHHHHHHHh----CCcEE---EeCCchhhHHHHHHHHHcC--
Confidence 5889999998 58999999888889986 577777877776543332 33222 23322 2334444443322
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+.+|+++.+.|.
T Consensus 97 ~g~D~vid~~G~ 108 (176)
T d2fzwa2 97 GGVDYSFECIGN 108 (176)
T ss_dssp SCBSEEEECSCC
T ss_pred CCCcEeeecCCC
Confidence 469999999985
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.80 E-value=0.0019 Score=44.96 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=33.8
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN 65 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~ 65 (282)
.++++||++||.|++. +|.+-++.|++.|++ |++.+....
T Consensus 7 ~l~l~~k~vlVvG~G~-va~~ka~~ll~~ga~--v~v~~~~~~ 46 (113)
T d1pjqa1 7 FCQLRDRDCLIVGGGD-VAERKARLLLEAGAR--LTVNALTFI 46 (113)
T ss_dssp EECCBTCEEEEECCSH-HHHHHHHHHHHTTBE--EEEEESSCC
T ss_pred EEEeCCCEEEEECCCH-HHHHHHHHHHHCCCe--EEEEeccCC
Confidence 4689999999999866 899999999999998 777666543
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.74 E-value=0.0057 Score=44.44 Aligned_cols=118 Identities=15% Similarity=0.076 Sum_probs=67.5
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++.|+||+|.+|.++|..|+.+|.--.+++.+.+..+.+ ..++... ........-+ ...+..+.+ ..-|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~-a~Dl~~~--~~~~~~~~~~-~~~~~~~~~-------~~aD 70 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGV-AADLSHI--ETRATVKGYL-GPEQLPDCL-------KGCD 70 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHH-HHHHTTS--SSSCEEEEEE-SGGGHHHHH-------TTCS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchh-hHHHhhh--hhhcCCCeEE-cCCChHHHh-------CCCC
Confidence 578999999999999999999986546899888754332 2233211 1111111112 223333222 2689
Q ss_pred EEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecc
Q 023441 110 LLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSAR 180 (282)
Q Consensus 110 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~ 180 (282)
++|..+|....+. +.-.+.+..|..-.-.+.+.+.++ ... ..++.+|..
T Consensus 71 ivVitag~~~~~g-------------~sR~~ll~~N~~i~~~i~~~i~~~---~p~------~iiivvtNP 119 (144)
T d1mlda1 71 VVVIPAGVPRKPG-------------MTRDDLFNTNATIVATLTAACAQH---CPD------AMICIISNP 119 (144)
T ss_dssp EEEECCSCCCCTT-------------CCGGGGHHHHHHHHHHHHHHHHHH---CTT------SEEEECSSC
T ss_pred EEEECCCcCCCCC-------------CCcchHHHHHHHHHHHHHHHHHhc---CCC------eEEEEecCc
Confidence 9999999754111 112234666666555555554433 222 267766664
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.73 E-value=0.00047 Score=52.18 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=53.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+++|.|+ |++|...++.+...|+. +|+.+++++++++...++ |.. + .+|..+.+.. +.+.+.... .
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~-~Vi~~d~~~~r~~~a~~l----Ga~-~--~i~~~~~~~~-~~v~~~t~g-~ 95 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAG-RIIGVGSRPICVEAAKFY----GAT-D--ILNYKNGHIE-DQVMKLTNG-K 95 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCS-CEEEECCCHHHHHHHHHH----TCS-E--EECGGGSCHH-HHHHHHTTT-S
T ss_pred CCCEEEEEcC-Ccchhhhhhhhhccccc-ccccccchhhhHHHHHhh----Ccc-c--cccccchhHH-HHHHHHhhc-c
Confidence 4889999986 89999999888888974 489999988776544332 322 1 2355543332 222222221 2
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
.+|++|.++|..
T Consensus 96 G~D~vid~~g~~ 107 (174)
T d1jqba2 96 GVDRVIMAGGGS 107 (174)
T ss_dssp CEEEEEECSSCT
T ss_pred CcceEEEccCCH
Confidence 499999999964
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.68 E-value=0.0019 Score=48.25 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=51.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+++|.|+ |++|...++.+...|++ |+.+++++++++...++ |....+ |..+..+.. ....+
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~--vi~~~~~~~k~~~a~~l----Ga~~~i---~~~~~~~~~------~~~~~ 90 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAE--TYVISRSSRKREDAMKM----GADHYI---ATLEEGDWG------EKYFD 90 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCE--EEEEESSSTTHHHHHHH----TCSEEE---EGGGTSCHH------HHSCS
T ss_pred CCCEEEEECC-CCcchhHHHHhhhcccc--ccccccchhHHHHhhcc----CCcEEe---eccchHHHH------Hhhhc
Confidence 5899999987 89999988777778987 89999998876644332 333222 332222221 12235
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
.+|+++.+.+..
T Consensus 91 ~~d~vi~~~~~~ 102 (168)
T d1piwa2 91 TFDLIVVCASSL 102 (168)
T ss_dssp CEEEEEECCSCS
T ss_pred ccceEEEEecCC
Confidence 699999998865
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.63 E-value=0.00069 Score=50.92 Aligned_cols=45 Identities=31% Similarity=0.365 Sum_probs=36.6
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL 73 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~ 73 (282)
+|++|||+||+||+|.+.++-....|++ |+..++++++.+.+.++
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~--Viat~~s~~k~~~~~~l 67 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYD--VVASTGNREAADYLKQL 67 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCC--EEEEESSSSTHHHHHHH
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCc--eEEEecCHHHHHHHHhh
Confidence 4678999999999999998665567988 99999998886654443
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.55 E-value=0.0071 Score=44.08 Aligned_cols=84 Identities=11% Similarity=0.028 Sum_probs=55.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
++.+=|++.|.||.|-+|..+|+.|.+.|++ |.+.+|+.......... ...+.++. ....++...+.++..
T Consensus 5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~--V~~~d~~~~~~~~~~~~----~~~~v~~~---~~~~~~~~v~~~~~~ 75 (152)
T d2pv7a2 5 INSDIHKIVIVGGYGKLGGLFARYLRASGYP--ISILDREDWAVAESILA----NADVVIVS---VPINLTLETIERLKP 75 (152)
T ss_dssp SCTTCCCEEEETTTSHHHHHHHHHHHTTTCC--EEEECTTCGGGHHHHHT----TCSEEEEC---SCGGGHHHHHHHHGG
T ss_pred cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCC--cEecccccccccchhhh----hccccccc---cchhhheeeeecccc
Confidence 4455589999999999999999999999999 99999987654331111 12333333 334566666777666
Q ss_pred HcCCccEEEECcc
Q 023441 104 KYGSLNLLINASG 116 (282)
Q Consensus 104 ~~~~id~lv~~ag 116 (282)
...+=.+++..+.
T Consensus 76 ~~~~~~iiiD~~S 88 (152)
T d2pv7a2 76 YLTENMLLADLTS 88 (152)
T ss_dssp GCCTTSEEEECCS
T ss_pred cccCCceEEEecc
Confidence 5433334444443
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.00086 Score=50.88 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=35.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL 71 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~ 71 (282)
+++++||+||+||+|...++-....|++ |+.+++++++.+.+.
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~--Via~~~~~~k~~~~~ 73 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQ--VVAVSGRESTHEYLK 73 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCC--EEEEESCGGGHHHHH
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCC--eEEEecchhHHHHHH
Confidence 4569999999999999998777778998 999999888765443
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.45 E-value=0.0044 Score=46.38 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=52.9
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhH-HHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVEST-IEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~-~~~~~~~~~~~~ 105 (282)
.|.+++|.|+ +|+|...+..++..|+. .|+..++++++++.+.+ +|..-. + |.++.+. .++.......
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~-~Vi~~~~~~~rl~~a~~----~GAd~~-i--n~~~~~~~~~~~~~~~~~-- 96 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAK-RIIAVDLNPDKFEKAKV----FGATDF-V--NPNDHSEPISQVLSKMTN-- 96 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEECSCGGGHHHHHH----TTCCEE-E--CGGGCSSCHHHHHHHHHT--
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhc-hheeecchHHHHHHHHH----cCCcEE-E--cCCCcchhHHHHHHhhcc--
Confidence 5789999985 77888888888888886 68888998887654433 343322 2 3333322 2232332222
Q ss_pred CCccEEEECcccC
Q 023441 106 GSLNLLINASGIL 118 (282)
Q Consensus 106 ~~id~lv~~ag~~ 118 (282)
+.+|+++.++|..
T Consensus 97 ~G~d~vid~~G~~ 109 (175)
T d1cdoa2 97 GGVDFSLECVGNV 109 (175)
T ss_dssp SCBSEEEECSCCH
T ss_pred CCcceeeeecCCH
Confidence 3699999999964
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.0025 Score=47.52 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=51.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+++|.|+ |++|...++.+...|++ +++++++.++.+.+.+ .+.... .|..+.+... ....
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~--~i~~~~~~~~~~~a~~----lGad~~---i~~~~~~~~~-------~~~~ 92 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGAH--VVAFTTSEAKREAAKA----LGADEV---VNSRNADEMA-------AHLK 92 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCE--EEEEESSGGGHHHHHH----HTCSEE---EETTCHHHHH-------TTTT
T ss_pred CCCEEEEecc-chHHHHHHHHhhccccc--chhhccchhHHHHHhc----cCCcEE---EECchhhHHH-------HhcC
Confidence 5899999986 89999988777778987 7788887776543322 233322 4655554322 2224
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
.+|+++.++|..
T Consensus 93 ~~D~vid~~g~~ 104 (168)
T d1uufa2 93 SFDFILNTVAAP 104 (168)
T ss_dssp CEEEEEECCSSC
T ss_pred CCceeeeeeecc
Confidence 799999999864
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.38 E-value=0.0043 Score=46.03 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=50.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+++|.|+ |++|...+.-+...|++ |+.+++++++++...+ .+.... .|.++.+..+++.+ ..+
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~--Vi~~~~~~~~~~~a~~----~Ga~~~---i~~~~~~~~~~~~~----~~~ 92 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGLH--VAAIDIDDAKLELARK----LGASLT---VNARQEDPVEAIQR----DIG 92 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHH----TTCSEE---EETTTSCHHHHHHH----HHS
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCCc--cceecchhhHHHhhhc----cCcccc---ccccchhHHHHHHH----hhc
Confidence 4889999886 99999988777778866 9999998877654333 333322 36666554444332 224
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
..|..|.+++.
T Consensus 93 g~~~~i~~~~~ 103 (166)
T d1llua2 93 GAHGVLVTAVS 103 (166)
T ss_dssp SEEEEEECCSC
T ss_pred CCccccccccc
Confidence 56666666654
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.33 E-value=0.0033 Score=47.03 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=51.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+++|.|+ |++|...+..+...|+. +|+..++++++++...+. +.. ++ .|-++ +.++...+... ..
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~-~vv~~~~~~~k~~~~~~~----ga~-~~--i~~~~-~~~~~~~~~~~--~~ 99 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAERL----GAD-HV--VDARR-DPVKQVMELTR--GR 99 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHHHT----TCS-EE--EETTS-CHHHHHHHHTT--TC
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCc-ccccccchhHHHHHHhhc----ccc-ee--ecCcc-cHHHHHHHhhC--CC
Confidence 4789999986 99999999888888986 577788887665543332 332 22 24333 33443333211 13
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
.+|++|.++|..
T Consensus 100 g~d~vid~~g~~ 111 (172)
T d1h2ba2 100 GVNVAMDFVGSQ 111 (172)
T ss_dssp CEEEEEESSCCH
T ss_pred CceEEEEecCcc
Confidence 599999999964
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.0028 Score=46.82 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=48.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
+++|.|+ |.+|..++..|++.|.+ |.+++|+............+ ...........+.+.. +..|
T Consensus 2 kI~IiGa-G~iG~~~a~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----------~~~D 65 (167)
T d1ks9a2 2 KITVLGC-GALGQLWLTALCKQGHE--VQGWLRVPQPYCSVNLVETD--GSIFNESLTANDPDFL-----------ATSD 65 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCE--EEEECSSCCSEEEEEEECTT--SCEEEEEEEESCHHHH-----------HTCS
T ss_pred EEEEECc-CHHHHHHHHHHHHCCCc--eEEEEcCHHHhhhhccccCC--ccccccccccchhhhh-----------cccc
Confidence 5788988 99999999999999988 99999998766543322211 1112222222233322 2689
Q ss_pred EEEECcccC
Q 023441 110 LLINASGIL 118 (282)
Q Consensus 110 ~lv~~ag~~ 118 (282)
+++.+.-..
T Consensus 66 ~iii~vka~ 74 (167)
T d1ks9a2 66 LLLVTLKAW 74 (167)
T ss_dssp EEEECSCGG
T ss_pred eEEEeeccc
Confidence 999987653
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.31 E-value=0.012 Score=42.90 Aligned_cols=78 Identities=19% Similarity=0.291 Sum_probs=53.3
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccc---cCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKN---RFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~---~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++++.|+|+ |.+|..+|..|+.+|.--.|++.++++++.+. ..++.. .....+.+...|. +++
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~---~~l-------- 72 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY---DDC-------- 72 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG---GGT--------
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH---HHh--------
Confidence 4678889997 99999999999999864459999999877554 233321 1122444444443 222
Q ss_pred HHcCCccEEEECcccCC
Q 023441 103 EKYGSLNLLINASGILS 119 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~ 119 (282)
..-|++|.++|...
T Consensus 73 ---~daDvvvitag~~~ 86 (148)
T d1ldna1 73 ---RDADLVVICAGANQ 86 (148)
T ss_dssp ---TTCSEEEECCSCCC
T ss_pred ---ccceeEEEeccccc
Confidence 26799999999864
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.26 E-value=0.0053 Score=46.01 Aligned_cols=40 Identities=23% Similarity=0.151 Sum_probs=34.8
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL 70 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~ 70 (282)
.|++.|.|+ |.+|.++|..|+++|.+ |.+.+|+++..+.+
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G~~--V~~~~r~~~~~~~~ 40 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKGQS--VLAWDIDAQRIKEI 40 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSCHHHHHHH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCE--EEEEECCHHHHHHH
Confidence 378999999 89999999999999987 99999988766543
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.03 Score=40.43 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=45.2
Q ss_pred EEEEecCCCchhHHHHHHHHhc-CCCcEEEEeecCCCcccc-cccccccCCC--ceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEK-NDKGCVIATCRNPNGATG-LLDLKNRFPE--RLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~-G~~~~vi~~~r~~~~~~~-~~~~~~~~~~--~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++.|+|++|.+|.++|..|+.+ +.--.+.+.+.++ ..+. ..++.. ... .... ..+-.+.+++
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h-~~~~~~~~~-~~~~~~~~~~----------- 67 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSH-IPTAVKIKG-FSGEDATPAL----------- 67 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHT-SCSSCEEEE-ECSSCCHHHH-----------
T ss_pred EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHC-CccccCCcE-EEcCCCcccc-----------
Confidence 5789999999999999988754 4222488888754 3322 233322 112 2221 1222233322
Q ss_pred CCccEEEECcccCC
Q 023441 106 GSLNLLINASGILS 119 (282)
Q Consensus 106 ~~id~lv~~ag~~~ 119 (282)
..-|++|.++|...
T Consensus 68 ~~aDvvvitaG~~~ 81 (145)
T d2cmda1 68 EGADVVLISAGVRR 81 (145)
T ss_dssp TTCSEEEECCSCCC
T ss_pred CCCCEEEECCCccC
Confidence 15799999999864
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.0076 Score=43.91 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=31.7
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR 62 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r 62 (282)
.++++||++||+|| |.+|..-++.|++.|++ |++++.
T Consensus 8 ~~~l~gkrvLViGg-G~va~~ka~~Ll~~GA~--VtVvap 44 (150)
T d1kyqa1 8 AHQLKDKRILLIGG-GEVGLTRLYKLMPTGCK--LTLVSP 44 (150)
T ss_dssp EECCTTCEEEEEEE-SHHHHHHHHHHGGGTCE--EEEEEE
T ss_pred heeeCCCEEEEECC-CHHHHHHHHHHHHCCCE--EEEEeC
Confidence 46789999999999 56999999999999998 665544
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.19 E-value=0.013 Score=42.54 Aligned_cols=76 Identities=11% Similarity=0.135 Sum_probs=50.8
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-ccccc---ccCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLK---NRFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~---~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
|++.|+|+ |.+|..+|..|+.+|.--.+++.+.++++.+. ..++. ...+.+...... |.+++
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~---d~~~l---------- 67 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIN---DWAAL---------- 67 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEES---CGGGG----------
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceecc---CHHHh----------
Confidence 67788895 99999999999999854459999998876544 22332 122223333333 33333
Q ss_pred cCCccEEEECcccCC
Q 023441 105 YGSLNLLINASGILS 119 (282)
Q Consensus 105 ~~~id~lv~~ag~~~ 119 (282)
..-|++|.++|...
T Consensus 68 -~~adiVVitaG~~~ 81 (146)
T d1hyha1 68 -ADADVVISTLGNIK 81 (146)
T ss_dssp -TTCSEEEECCSCGG
T ss_pred -ccccEEEEeccccc
Confidence 26899999999753
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.18 E-value=0.009 Score=43.44 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=49.9
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccc--cCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKN--RFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~--~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
.+++.|.|+ |.+|..+|..|+.+|.--.|++.+++++..+. ..++.. ...........|. ++
T Consensus 5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~---~~----------- 69 (146)
T d1ez4a1 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY---SD----------- 69 (146)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG---GG-----------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH---HH-----------
Confidence 357788895 99999999999999843359999999876543 222221 1122334444443 22
Q ss_pred cCCccEEEECcccCC
Q 023441 105 YGSLNLLINASGILS 119 (282)
Q Consensus 105 ~~~id~lv~~ag~~~ 119 (282)
...-|++|.++|...
T Consensus 70 ~~~adivvitag~~~ 84 (146)
T d1ez4a1 70 CKDADLVVITAGAPQ 84 (146)
T ss_dssp GTTCSEEEECCCC--
T ss_pred hccccEEEEeccccc
Confidence 236899999999764
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.11 E-value=0.0025 Score=48.98 Aligned_cols=81 Identities=16% Similarity=0.099 Sum_probs=52.5
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|.+|+|.|+ |++|...+..+...|+. +|+.+++++++++.+.+ .+.... .|-.+ +++.+.+.++... .
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~-~Vi~~d~~~~rl~~a~~----~Ga~~~---~~~~~-~~~~~~i~~~t~g-~ 93 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAA-VVIVGDLNPARLAHAKA----QGFEIA---DLSLD-TPLHEQIAALLGE-P 93 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEEESCHHHHHHHHH----TTCEEE---ETTSS-SCHHHHHHHHHSS-S
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhccc-ceeeecccchhhHhhhh----ccccEE---EeCCC-cCHHHHHHHHhCC-C
Confidence 4889999986 89998888777778885 68888888776653333 233221 23333 3343334333222 3
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
.+|+++.+.|..
T Consensus 94 g~D~vid~vG~~ 105 (195)
T d1kola2 94 EVDCAVDAVGFE 105 (195)
T ss_dssp CEEEEEECCCTT
T ss_pred CcEEEEECcccc
Confidence 599999999964
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.09 E-value=0.029 Score=41.28 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=56.4
Q ss_pred ccccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccc---cCCCceeEEEeeCCChhHHH
Q 023441 20 ASASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKN---RFPERLDVLQLDLTVESTIE 95 (282)
Q Consensus 20 ~~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~---~~~~~v~~~~~Dls~~~~~~ 95 (282)
.....-++.+.+.|.|+ |.+|..+|..|+.+|.--.+++.+++++..+. ..++.. ..+.....-.. |.+++
T Consensus 12 ~~~~~~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~---d~~~~- 86 (160)
T d1i0za1 12 AEEEATVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADK---DYSVT- 86 (160)
T ss_dssp SCSCCCCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECS---SGGGG-
T ss_pred CcccccCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEecc---chhhc-
Confidence 33445556678888996 99999999999999964469999998876643 333321 11223222223 33332
Q ss_pred HHHHHHHHHcCCccEEEECcccCC
Q 023441 96 ASAKSIKEKYGSLNLLINASGILS 119 (282)
Q Consensus 96 ~~~~~~~~~~~~id~lv~~ag~~~ 119 (282)
..-|++|..||...
T Consensus 87 ----------~~adiVVitAg~~~ 100 (160)
T d1i0za1 87 ----------ANSKIVVVTAGVRQ 100 (160)
T ss_dssp ----------TTCSEEEECCSCCC
T ss_pred ----------ccccEEEEecCCcc
Confidence 26899999999864
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.0051 Score=44.98 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=56.1
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
.++|.|+ +.+|..++++|.++|.+ ++++..+++......+... ...+.++..|.+|++.++++-- .+.|
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~--v~vId~d~~~~~~~~~~~~--~~~~~vi~Gd~~d~~~L~~a~i------~~a~ 73 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQN--VTVISNLPEDDIKQLEQRL--GDNADVIPGDSNDSSVLKKAGI------DRCR 73 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHH--CTTCEEEESCTTSHHHHHHHTT------TTCS
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCC--EEEEeccchhHHHHHHHhh--cCCcEEEEccCcchHHHHHhcc------ccCC
Confidence 5778887 69999999999999998 8888888765443332221 2478899999999987765422 3678
Q ss_pred EEEECcc
Q 023441 110 LLINASG 116 (282)
Q Consensus 110 ~lv~~ag 116 (282)
.+|...+
T Consensus 74 ~vi~~~~ 80 (153)
T d1id1a_ 74 AILALSD 80 (153)
T ss_dssp EEEECSS
T ss_pred EEEEccc
Confidence 8877765
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.04 E-value=0.00036 Score=53.01 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=37.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccc
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD 72 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~ 72 (282)
-+++||+++|.|+ ||.+++++..|.+.| + |.+..|+.++.+++.+
T Consensus 14 ~~~~~k~vlIlGa-GG~arai~~aL~~~~-~--i~I~nR~~~ka~~l~~ 58 (177)
T d1nvta1 14 GRVKDKNIVIYGA-GGAARAVAFELAKDN-N--IIIANRTVEKAEALAK 58 (177)
T ss_dssp CCCCSCEEEEECC-SHHHHHHHHHHTSSS-E--EEEECSSHHHHHHHHH
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHcccc-c--eeeehhhhhHHHHHHH
Confidence 4589999999977 578999999997766 4 9999999888776544
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.02 E-value=0.015 Score=41.20 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=54.6
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
++.|.|++|-+|+++++.+.++|.+ .+...+++... .+.. .. +-.|+|.++...+.++.+.+. ++-
T Consensus 2 ki~i~G~~GrMG~~i~~~~~~~~~~-l~~~id~~~~~------~~~~--~D---VvIDFS~p~~~~~~l~~~~~~--~~p 67 (128)
T d1vm6a3 2 KYGIVGYSGRMGQEIQKVFSEKGHE-LVLKVDVNGVE------ELDS--PD---VVIDFSSPEALPKTVDLCKKY--RAG 67 (128)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCE-EEEEEETTEEE------ECSC--CS---EEEECSCGGGHHHHHHHHHHH--TCE
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCe-EEEEECCCcHH------Hhcc--CC---EEEEecCHHHHHHHHHHHHhc--CCC
Confidence 4899999999999999988888876 23333433211 1111 12 457999999999999998876 577
Q ss_pred EEEECcccC
Q 023441 110 LLINASGIL 118 (282)
Q Consensus 110 ~lv~~ag~~ 118 (282)
+++-.+|..
T Consensus 68 ~ViGTTG~~ 76 (128)
T d1vm6a3 68 LVLGTTALK 76 (128)
T ss_dssp EEECCCSCC
T ss_pred EEEEcCCCC
Confidence 888888865
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.88 E-value=0.039 Score=40.46 Aligned_cols=79 Identities=19% Similarity=0.171 Sum_probs=52.0
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccc---cCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKN---RFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~---~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
++...+.|+|+ |.+|..+|..|+.+|.--.+++.+++++.++. ..++.. ..+........|. +++
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~---~~~------- 85 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY---NVS------- 85 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG---GGG-------
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch---hhh-------
Confidence 44456888886 99999999999999864459999998876553 333322 1122322223333 222
Q ss_pred HHHcCCccEEEECcccCC
Q 023441 102 KEKYGSLNLLINASGILS 119 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~ 119 (282)
..-|++|..+|...
T Consensus 86 ----~~adivvitag~~~ 99 (159)
T d2ldxa1 86 ----ANSKLVIITAGARM 99 (159)
T ss_dssp ----TTEEEEEECCSCCC
T ss_pred ----ccccEEEEeccccc
Confidence 36899999999864
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.06 Score=36.88 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=56.8
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
+++.-.+.++.|.| +|-||+.++....+.|.+ +++.+.++..-.. .. --.++..|+.|.+.+.++....
T Consensus 5 ~~~~~~~~kigIlG-gGQL~rMla~aA~~lG~~--v~v~d~~~~~PA~--~v------a~~~i~~~~~d~~~l~~~~~~~ 73 (111)
T d1kjqa2 5 TALRPAATRVMLLG-SGELGKEVAIECQRLGVE--VIAVDRYADAPAM--HV------AHRSHVINMLDGDALRRVVELE 73 (111)
T ss_dssp CTTSTTCCEEEEES-CSHHHHHHHHHHHTTTCE--EEEEESSTTCGGG--GG------SSEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEe-CCHHHHHHHHHHHHCCCE--EEEEcCCCCCchh--hc------CCeEEECCCCCHHHHHHHHHhh
Confidence 34445667899999 678999999999999988 8888877654221 00 1256778999999998887753
Q ss_pred HHHcCCccEEEECc
Q 023441 102 KEKYGSLNLLINAS 115 (282)
Q Consensus 102 ~~~~~~id~lv~~a 115 (282)
.+|++..--
T Consensus 74 -----~~DviT~E~ 82 (111)
T d1kjqa2 74 -----KPHYIVPEI 82 (111)
T ss_dssp -----CCSEEEECS
T ss_pred -----CCceEEEEe
Confidence 578885433
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.77 E-value=0.022 Score=42.42 Aligned_cols=84 Identities=14% Similarity=0.028 Sum_probs=53.3
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeC--CChhHHHHHHHH
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDL--TVESTIEASAKS 100 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dl--s~~~~~~~~~~~ 100 (282)
..+++||+++|.|-|.-+|+-++..|+.+|+. |..+..+.........-. .-...-..|+ -..+.+++.+.
T Consensus 24 g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaT--Vt~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~lk~~~~- 96 (171)
T d1edza1 24 GNRLYGKKCIVINRSEIVGRPLAALLANDGAT--VYSVDVNNIQKFTRGESL----KLNKHHVEDLGEYSEDLLKKCSL- 96 (171)
T ss_dssp TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCE--EEEECSSEEEEEESCCCS----SCCCCEEEEEEECCHHHHHHHHH-
T ss_pred cCCCCCCEEEEECCccccHHHHHHHHHHCCCE--EEEeccccccccccccce----eeeeeccccccccchhHHhhccc-
Confidence 34899999999999999999999999999987 777665432211000000 0011112222 23444555554
Q ss_pred HHHHcCCccEEEECcccCC
Q 023441 101 IKEKYGSLNLLINASGILS 119 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~~ 119 (282)
..|++|..+|...
T Consensus 97 ------~aDIvIsavG~p~ 109 (171)
T d1edza1 97 ------DSDVVITGVPSEN 109 (171)
T ss_dssp ------HCSEEEECCCCTT
T ss_pred ------cCCEEEEccCCCc
Confidence 4799999998753
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=95.75 E-value=0.037 Score=39.82 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=45.6
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccccC--CCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKNRF--PERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~~~--~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.+.|+|+ |.+|..+|..|+.+|.--.+++.+++++..+. ..++.... ..+...... +.++ +.
T Consensus 3 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~---~~~~-----------~~ 67 (142)
T d1y6ja1 3 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG---DYSD-----------VK 67 (142)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----CGGG-----------GT
T ss_pred eEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeC---cHHH-----------hC
Confidence 4566686 99999999999999864359999999987654 33433211 123333222 2222 23
Q ss_pred CccEEEECcccCC
Q 023441 107 SLNLLINASGILS 119 (282)
Q Consensus 107 ~id~lv~~ag~~~ 119 (282)
.-|++|..+|...
T Consensus 68 ~adivvitag~~~ 80 (142)
T d1y6ja1 68 DCDVIVVTAGANR 80 (142)
T ss_dssp TCSEEEECCCC--
T ss_pred CCceEEEeccccc
Confidence 6899999999764
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.65 E-value=0.065 Score=38.59 Aligned_cols=79 Identities=16% Similarity=0.076 Sum_probs=49.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc--ccc-ccccc---ccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG--ATG-LLDLK---NRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~--~~~-~~~~~---~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+.|+||+|.+|..+|..|+.+|.--.+++.++++.. .+. ..++. .....+++....--.|.+++
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l--------- 72 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRII--------- 72 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGG---------
T ss_pred EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHh---------
Confidence 4789999999999999999999853359999987642 222 22222 12222333221111122222
Q ss_pred HcCCccEEEECcccCC
Q 023441 104 KYGSLNLLINASGILS 119 (282)
Q Consensus 104 ~~~~id~lv~~ag~~~ 119 (282)
..-|++|.+||...
T Consensus 73 --~~aDvVVitAG~~~ 86 (145)
T d1hyea1 73 --DESDVVIITSGVPR 86 (145)
T ss_dssp --TTCSEEEECCSCCC
T ss_pred --ccceEEEEeccccc
Confidence 36899999999764
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=95.61 E-value=0.03 Score=41.76 Aligned_cols=86 Identities=9% Similarity=0.063 Sum_probs=60.0
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC---------------CCceeEEEeeCCChhH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF---------------PERLDVLQLDLTVEST 93 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~---------------~~~v~~~~~Dls~~~~ 93 (282)
+++-|.|- |-+|..+|+.|+++|++ |++.+|++++.+.+.+..... -.....+-..+.+.++
T Consensus 3 ~nIg~IGl-G~MG~~mA~~L~~~G~~--V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~ 79 (176)
T d2pgda2 3 ADIALIGL-AVMGQNLILNMNDHGFV--VCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQA 79 (176)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCC--EEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHH
T ss_pred CcEEEEeE-hHHHHHHHHHHHHCCCe--EEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHH
Confidence 45667766 88999999999999998 999999988766543221100 1133455556777788
Q ss_pred HHHHHHHHHHHcCCccEEEECccc
Q 023441 94 IEASAKSIKEKYGSLNLLINASGI 117 (282)
Q Consensus 94 ~~~~~~~~~~~~~~id~lv~~ag~ 117 (282)
+.+..+.+.....+=+++|.+.-.
T Consensus 80 v~~v~~~l~~~~~~g~iiid~sT~ 103 (176)
T d2pgda2 80 VDNFIEKLVPLLDIGDIIIDGGNS 103 (176)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCC
T ss_pred HHHHHHHHHhccccCcEEEecCcc
Confidence 888888887776655666666544
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=95.50 E-value=0.0025 Score=49.16 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=35.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT 68 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~ 68 (282)
.+++||+++|-| .|.+|..+|+.|.+.|++ |++.+.+.....
T Consensus 23 ~~L~gk~v~IqG-~G~VG~~~A~~L~~~Gak--vvv~d~d~~~~~ 64 (201)
T d1c1da1 23 GSLDGLTVLVQG-LGAVGGSLASLAAEAGAQ--LLVADTDTERVA 64 (201)
T ss_dssp CCSTTCEEEEEC-CSHHHHHHHHHHHHTTCE--EEEECSCHHHHH
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCE--EEEecchHHHHH
Confidence 479999999997 777999999999999988 888877765544
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=95.50 E-value=0.055 Score=38.76 Aligned_cols=76 Identities=18% Similarity=0.069 Sum_probs=50.3
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc-ccccc---cCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL-LDLKN---RFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~-~~~~~---~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++.|+|+ |.+|..++..|+..|.--.+++.+.++++.+.. .+... ....+.++... .|.+++
T Consensus 2 KI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~~~~----------- 67 (142)
T d1guza1 2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDYADT----------- 67 (142)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCGGGG-----------
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCHHHh-----------
Confidence 3677796 999999999999998533599999999876542 22211 11234444332 333332
Q ss_pred CCccEEEECcccCC
Q 023441 106 GSLNLLINASGILS 119 (282)
Q Consensus 106 ~~id~lv~~ag~~~ 119 (282)
..-|++|.++|...
T Consensus 68 ~dadvvvitag~~~ 81 (142)
T d1guza1 68 ANSDIVIITAGLPR 81 (142)
T ss_dssp TTCSEEEECCSCCC
T ss_pred cCCeEEEEEEecCC
Confidence 36899999999864
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.49 E-value=0.019 Score=41.95 Aligned_cols=79 Identities=10% Similarity=0.026 Sum_probs=45.1
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCC---c----EEEEeecCCCccccccccccc-CCCceeEEEeeCCChhHHHHHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDK---G----CVIATCRNPNGATGLLDLKNR-FPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~---~----~vi~~~r~~~~~~~~~~~~~~-~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
++.|+||+|.+|..++..|+..+.- . .++...++.+.++........ .......+...-.+.++
T Consensus 6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 77 (154)
T d1y7ta1 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVA-------- 77 (154)
T ss_dssp EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHH--------
T ss_pred EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhh--------
Confidence 7899999999999999999886531 0 122223333333332222221 12233334333332222
Q ss_pred HHHcCCccEEEECcccCC
Q 023441 102 KEKYGSLNLLINASGILS 119 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~ 119 (282)
+...|++|.++|...
T Consensus 78 ---~~~advViitaG~~~ 92 (154)
T d1y7ta1 78 ---FKDADYALLVGAAPR 92 (154)
T ss_dssp ---TTTCSEEEECCCCCC
T ss_pred ---cccccEEEeecCcCC
Confidence 237899999999864
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=95.45 E-value=0.063 Score=40.00 Aligned_cols=23 Identities=22% Similarity=0.052 Sum_probs=21.0
Q ss_pred cEEEEecCCCchhHHHHHHHHhc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEK 51 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~ 51 (282)
-+|.||||+|.||..++..|+..
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g 47 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASG 47 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT
T ss_pred cEEEEECCCcHHHHHHHHHHHcC
Confidence 47999999999999999999874
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=95.45 E-value=0.042 Score=39.47 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=50.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC--Ccccc-cccccc--cCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP--NGATG-LLDLKN--RFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~--~~~~~-~~~~~~--~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
++.|+||+|.+|..+|..++.+|.--.+++.+.+. +..+. ..++.. ....+.+....|. +++
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~---~~~---------- 68 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY---EDT---------- 68 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG---GGG----------
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH---HHh----------
Confidence 57899999999999999999998654588888643 22322 233321 2234455444433 322
Q ss_pred cCCccEEEECcccCC
Q 023441 105 YGSLNLLINASGILS 119 (282)
Q Consensus 105 ~~~id~lv~~ag~~~ 119 (282)
..-|++|..+|...
T Consensus 69 -~~aDiVvitaG~~~ 82 (142)
T d1o6za1 69 -AGSDVVVITAGIPR 82 (142)
T ss_dssp -TTCSEEEECCCCCC
T ss_pred -hhcCEEEEeccccc
Confidence 36899999999764
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=95.40 E-value=0.028 Score=41.04 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=49.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc-ccccc---cCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL-LDLKN---RFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~-~~~~~---~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
+.+++.|.|+ |.+|..+|..|+..+.. .+++.+.+++.++.. .++.. ..+..... ..+ ++.+ +.+
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~-el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~-~~~-~~~~---~~~---- 74 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSV-RAE-YSYE---AAL---- 74 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCE-EEE-CSHH---HHH----
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCc-eEEEEEeccccchhHHHHHhhhccccCCeeEE-ecc-Cchh---hhh----
Confidence 4568888897 99999999988888853 599999988776542 33221 11111111 111 1211 111
Q ss_pred HHcCCccEEEECcccCC
Q 023441 103 EKYGSLNLLINASGILS 119 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~ 119 (282)
..-|+++.++|...
T Consensus 75 ---~~adiVvitag~~~ 88 (154)
T d1pzga1 75 ---TGADCVIVTAGLTK 88 (154)
T ss_dssp ---TTCSEEEECCSCSS
T ss_pred ---cCCCeEEEeccccc
Confidence 26899999999875
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.35 E-value=0.012 Score=45.22 Aligned_cols=78 Identities=18% Similarity=0.174 Sum_probs=58.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
-+++|++||=.||++|. ++..++..|+. .|+.++.++...+.+.+.+...+.+..++.+|+.+.
T Consensus 43 ~dl~g~~vLDlg~GtG~---l~i~a~~~g~~-~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~------------ 106 (201)
T d1wy7a1 43 GDIEGKVVADLGAGTGV---LSYGALLLGAK-EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF------------ 106 (201)
T ss_dssp TSSTTCEEEEETCTTCH---HHHHHHHTTCS-EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC------------
T ss_pred CCCCCCEEEECcCcchH---HHHHHHHcCCC-EEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh------------
Confidence 45789999999986662 23345567874 599999998877766666666677889999997553
Q ss_pred HcCCccEEEECcccC
Q 023441 104 KYGSLNLLINASGIL 118 (282)
Q Consensus 104 ~~~~id~lv~~ag~~ 118 (282)
.+++|.+|.|.-..
T Consensus 107 -~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 107 -NSRVDIVIMNPPFG 120 (201)
T ss_dssp -CCCCSEEEECCCCS
T ss_pred -CCcCcEEEEcCccc
Confidence 25799999998654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.31 E-value=0.0081 Score=44.39 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=47.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.|++++|.|+ |++|...+..+...|++ |+.+++++++++.+.+ .+.... .|-++.+ ....+. +...
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~--v~~~~~~~~r~~~~k~----~Ga~~~---~~~~~~~-~~~~~~---~~~~ 92 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLN--VVAVDIGDEKLELAKE----LGADLV---VNPLKED-AAKFMK---EKVG 92 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCE--EEEECSCHHHHHHHHH----TTCSEE---ECTTTSC-HHHHHH---HHHS
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCe--EeccCCCHHHhhhhhh----cCccee---cccccch-hhhhcc---cccC
Confidence 5789999875 99999988888888886 8888888877654333 333322 3444433 222222 2223
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
..|.+|.+++.
T Consensus 93 ~~~~~v~~~~~ 103 (168)
T d1rjwa2 93 GVHAAVVTAVS 103 (168)
T ss_dssp SEEEEEESSCC
T ss_pred CCceEEeecCC
Confidence 55666667664
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.26 E-value=0.026 Score=41.46 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=51.8
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccc---------cc-CCCceeEEEeeCCChhHHHHHHH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK---------NR-FPERLDVLQLDLTVESTIEASAK 99 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~---------~~-~~~~v~~~~~Dls~~~~~~~~~~ 99 (282)
++.|.|. |-+|.++|+.|.+.|.+ |++.+|+.+..+...+.- .. ....+.++.+ ..++++++++
T Consensus 2 kI~iIG~-G~mG~~lA~~l~~~g~~--V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilav---p~~~~~~vl~ 75 (165)
T d2f1ka2 2 KIGVVGL-GLIGASLAGDLRRRGHY--LIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCT---PIQLILPTLE 75 (165)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCE--EEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECS---CHHHHHHHHH
T ss_pred EEEEEee-cHHHHHHHHHHHHCCCE--EEEEECCchHHHHHHHhhccceeeeecccccccccccccC---cHhhhhhhhh
Confidence 3566755 99999999999999987 999999876544322110 00 0124444433 3567888888
Q ss_pred HHHHHcCCccEEEECcc
Q 023441 100 SIKEKYGSLNLLINASG 116 (282)
Q Consensus 100 ~~~~~~~~id~lv~~ag 116 (282)
++...+.+=.+++..++
T Consensus 76 ~l~~~l~~~~iv~~~~s 92 (165)
T d2f1ka2 76 KLIPHLSPTAIVTDVAS 92 (165)
T ss_dssp HHGGGSCTTCEEEECCS
T ss_pred hhhhhcccccceeeccc
Confidence 88776655555555544
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.22 E-value=0.051 Score=39.96 Aligned_cols=87 Identities=21% Similarity=0.180 Sum_probs=54.8
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccc------c---CC-CceeEEEeeCCChhHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKN------R---FP-ERLDVLQLDLTVESTIEASA 98 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~------~---~~-~~v~~~~~Dls~~~~~~~~~ 98 (282)
|+++|.|+ |-+|.++|+.|.+.|....|+..+++.+..+.+.+.-. . .. ....++-+- +-++++.+.+
T Consensus 2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila-~p~~~~~~vl 79 (171)
T d2g5ca2 2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-SPVRTFREIA 79 (171)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-SCHHHHHHHH
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhcccccccccc-CCchhhhhhh
Confidence 46888875 99999999999999987679999998876543222110 0 00 011222221 2356778888
Q ss_pred HHHHHHcCCccEEEECccc
Q 023441 99 KSIKEKYGSLNLLINASGI 117 (282)
Q Consensus 99 ~~~~~~~~~id~lv~~ag~ 117 (282)
+++...+.+=.+++..++.
T Consensus 80 ~~l~~~~~~~~ii~d~~s~ 98 (171)
T d2g5ca2 80 KKLSYILSEDATVTDQGSV 98 (171)
T ss_dssp HHHHHHSCTTCEEEECCSC
T ss_pred hhhhccccccccccccccc
Confidence 8887776544555555554
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.85 E-value=0.015 Score=44.39 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=53.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
=++.||+||=.||++|+ ++..++..|+. .|+.++.++...+.+.+. -.++.++.+|+.+.+
T Consensus 45 ~dl~Gk~VLDlGcGtG~---l~i~a~~~ga~-~V~~vDid~~a~~~ar~N----~~~~~~~~~D~~~l~----------- 105 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGI---LACGSYLLGAE-SVTAFDIDPDAIETAKRN----CGGVNFMVADVSEIS----------- 105 (197)
T ss_dssp TSSBTSEEEEETCTTCH---HHHHHHHTTBS-EEEEEESCHHHHHHHHHH----CTTSEEEECCGGGCC-----------
T ss_pred CCCCCCEEEEeCCCCcH---HHHHHHHcCCC-cccccccCHHHHHHHHHc----cccccEEEEehhhcC-----------
Confidence 35789999999988772 33457777875 699999887665544333 246889999986532
Q ss_pred HcCCccEEEECccc
Q 023441 104 KYGSLNLLINASGI 117 (282)
Q Consensus 104 ~~~~id~lv~~ag~ 117 (282)
+++|.+|.|.-.
T Consensus 106 --~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 106 --GKYDTWIMNPPF 117 (197)
T ss_dssp --CCEEEEEECCCC
T ss_pred --CcceEEEeCccc
Confidence 589999998654
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=94.73 E-value=0.14 Score=36.91 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=50.3
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc-cccccc---CCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL-LDLKNR---FPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~-~~~~~~---~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
..+.|.|+ |.+|..+|..|+.++.. .+++.+++++..+.. .++... .+.+..+...| +.+++
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~~l~-el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~~~~---------- 69 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQKNLG-DVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TYDDL---------- 69 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CGGGG----------
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeccCCcceeeecchhhhccccCCCcEEEecc--ccccc----------
Confidence 46777885 99999999888888864 699999998776542 232211 12344444432 22222
Q ss_pred cCCccEEEECcccCC
Q 023441 105 YGSLNLLINASGILS 119 (282)
Q Consensus 105 ~~~id~lv~~ag~~~ 119 (282)
..-|++|.++|...
T Consensus 70 -~~advvvitag~~~ 83 (150)
T d1t2da1 70 -AGADVVIVTAGFTK 83 (150)
T ss_dssp -TTCSEEEECCSCSS
T ss_pred -CCCcEEEEeccccc
Confidence 36899999999865
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.67 E-value=0.099 Score=37.08 Aligned_cols=78 Identities=12% Similarity=0.161 Sum_probs=52.4
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEE-EeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVI-ATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi-~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
++.|.|++|-+|+++++...+...- .++ ..++... ... .. ..+.. +-.|+|.++.+.+.++.+.+. ++
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~-~l~~~~d~~~~-~~~---~~-~~~~D---vvIDFS~p~~~~~~~~~~~~~--~~ 69 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDL-TLSAELDAGDP-LSL---LT-DGNTE---VVIDFTHPDVVMGNLEFLIDN--GI 69 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTS-EEEEEECTTCC-THH---HH-TTTCS---EEEECCCTTTHHHHHHHHHHT--TC
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCCc-hhh---hc-cccCC---EEEEcccHHHHHHHHHHHHhc--CC
Confidence 5789999999999999987775432 233 3333221 111 11 11122 558999999999999988875 57
Q ss_pred cEEEECcccC
Q 023441 109 NLLINASGIL 118 (282)
Q Consensus 109 d~lv~~ag~~ 118 (282)
-.++=.+|..
T Consensus 70 ~~ViGTTG~~ 79 (135)
T d1yl7a1 70 HAVVGTTGFT 79 (135)
T ss_dssp EEEECCCCCC
T ss_pred CEEEeccccc
Confidence 7788777764
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=94.58 E-value=0.081 Score=37.76 Aligned_cols=75 Identities=23% Similarity=0.239 Sum_probs=49.6
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccc--cCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKN--RFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~--~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++.|.|+ |.+|..++..++.++.--.+++.+.++++++. ..++.. ....+......| .+++ .
T Consensus 2 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~---~~~~-----------~ 66 (140)
T d1a5za1 2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD---YADL-----------K 66 (140)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC---GGGG-----------T
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc---HHHh-----------c
Confidence 4567786 89999999999998854469999999876654 233222 112234443333 3322 2
Q ss_pred CccEEEECcccCC
Q 023441 107 SLNLLINASGILS 119 (282)
Q Consensus 107 ~id~lv~~ag~~~ 119 (282)
.-|++|.++|...
T Consensus 67 ~adivvitag~~~ 79 (140)
T d1a5za1 67 GSDVVIVAAGVPQ 79 (140)
T ss_dssp TCSEEEECCCCCC
T ss_pred CCCEEEEeccccc
Confidence 6899999999864
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.57 E-value=0.06 Score=42.27 Aligned_cols=83 Identities=10% Similarity=0.027 Sum_probs=58.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
-.|++++|+|.| .||+|..+++.|++.|.. .+++++.+.-+..++.... -+-.-|+.. ..++.+.+.+.+
T Consensus 26 ~kL~~~~VliiG-~GglGs~va~~La~~Gvg-~i~lvD~D~Ve~sNL~RQ~-------l~~~~diG~-~K~~~a~~~l~~ 95 (247)
T d1jw9b_ 26 EALKDSRVLIVG-LGGLGCAASQYLASAGVG-NLTLLDFDTVSLSNLQRQT-------LHSDATVGQ-PKVESARDALTR 95 (247)
T ss_dssp HHHHHCEEEEEC-CSHHHHHHHHHHHHHTCS-EEEEECCCBCCGGGGGTCT-------TCCGGGTTS-BHHHHHHHHHHH
T ss_pred HHHhCCCEEEEC-CCHHHHHHHHHHHHcCCC-eEEEECCcccchhhhhhhc-------cccHhhcCc-hHHHHHHHHHHH
Confidence 358889999999 678999999999999986 7999998887766543321 111235654 446666777777
Q ss_pred HcCCccEEEECcc
Q 023441 104 KYGSLNLLINASG 116 (282)
Q Consensus 104 ~~~~id~lv~~ag 116 (282)
..+.+.+-.+..-
T Consensus 96 ~np~~~i~~~~~~ 108 (247)
T d1jw9b_ 96 INPHIAITPVNAL 108 (247)
T ss_dssp HCTTSEEEEECSC
T ss_pred hhcccchhhhhhh
Confidence 7666666655443
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.44 E-value=0.013 Score=41.29 Aligned_cols=71 Identities=17% Similarity=0.130 Sum_probs=49.3
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSL 108 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~i 108 (282)
|.++|.|. +.+|..+++.|. |.. |+++..+++..+...+ ..+.++..|.++++.++++- ..+.
T Consensus 1 kHivI~G~-g~~g~~l~~~L~--~~~--i~vi~~d~~~~~~~~~------~~~~~i~Gd~~~~~~L~~a~------i~~A 63 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLRELR--GSE--VFVLAEDENVRKKVLR------SGANFVHGDPTRVSDLEKAN------VRGA 63 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTSC--GGG--EEEEESCTTHHHHHHH------TTCEEEESCTTSHHHHHHTT------CTTC
T ss_pred CEEEEECC-CHHHHHHHHHHc--CCC--CEEEEcchHHHHHHHh------cCccccccccCCHHHHHHhh------hhcC
Confidence 56888886 778999999995 444 6667777766543321 25788999999988777532 2356
Q ss_pred cEEEECcc
Q 023441 109 NLLINASG 116 (282)
Q Consensus 109 d~lv~~ag 116 (282)
+.++.+..
T Consensus 64 ~~vi~~~~ 71 (129)
T d2fy8a1 64 RAVIVNLE 71 (129)
T ss_dssp SEEEECCS
T ss_pred cEEEEecc
Confidence 77776554
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=93.92 E-value=0.24 Score=35.36 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=48.8
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccc--cCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKN--RFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~--~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
.+.|+|+ |.+|..+|..|+.+|.--.+++.+.++++.+. ..++.. .+.....+... .+.+++ .
T Consensus 3 Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~--~~~~~~-----------~ 68 (143)
T d1llda1 3 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDPEIC-----------R 68 (143)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCGGGG-----------T
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecC--CCHHHh-----------h
Confidence 4667786 99999999999999864469999999876543 223221 11122233222 222322 2
Q ss_pred CccEEEECcccCC
Q 023441 107 SLNLLINASGILS 119 (282)
Q Consensus 107 ~id~lv~~ag~~~ 119 (282)
.-|++|..+|...
T Consensus 69 daDvVVitaG~~~ 81 (143)
T d1llda1 69 DADMVVITAGPRQ 81 (143)
T ss_dssp TCSEEEECCCCCC
T ss_pred CCcEEEEeccccc
Confidence 5799999999864
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.011 Score=45.17 Aligned_cols=39 Identities=13% Similarity=0.040 Sum_probs=34.2
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL 70 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~ 70 (282)
|++.|.|+ |-+|..+|..++..|.+ |++.+++++.+++.
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~~--V~l~D~~~~~l~~a 43 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGHT--VVLVDQTEDILAKS 43 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSCHHHHHHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCCc--EEEEECChHHHHHH
Confidence 68999998 77999999999999988 99999998776543
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=93.86 E-value=0.22 Score=35.46 Aligned_cols=76 Identities=17% Similarity=0.044 Sum_probs=48.0
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccc---cCCCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKN---RFPERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~---~~~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
|.+.|+|+ |.+|.++|..|+.++.. .+++.+.+++..+. ..++.. ..+....+..+ .|.+++
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~--~d~~~~---------- 67 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NNYADT---------- 67 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCGGGG----------
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhccccccCCCCEEEec--CcHHHh----------
Confidence 46777786 99999999999998863 59999998876554 223211 11122223221 222222
Q ss_pred cCCccEEEECcccCC
Q 023441 105 YGSLNLLINASGILS 119 (282)
Q Consensus 105 ~~~id~lv~~ag~~~ 119 (282)
..-|++|.++|...
T Consensus 68 -~~advvvitag~~~ 81 (142)
T d1uxja1 68 -ANSDVIVVTSGAPR 81 (142)
T ss_dssp -TTCSEEEECCSCC-
T ss_pred -cCCCEEEEeeeccC
Confidence 26899999999864
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.82 E-value=0.012 Score=44.76 Aligned_cols=82 Identities=9% Similarity=0.098 Sum_probs=60.1
Q ss_pred CcEEE-EecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 28 GGVSL-VQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 28 gk~vl-ItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
|++++ +|-|+||...++.+.+ . +. .|+.++++++..+...+.+..++.++.++..++++...+. ... ..+
T Consensus 24 ~~~~lD~t~G~Gghs~~il~~~-~-~~--~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~---~~~--~~~ 94 (192)
T d1m6ya2 24 EKIILDCTVGEGGHSRAILEHC-P-GC--RIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL---KTL--GIE 94 (192)
T ss_dssp TCEEEETTCTTSHHHHHHHHHC-T-TC--EEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH---HHT--TCS
T ss_pred CCEEEEecCCCcHHHHHHHhcC-C-CC--eEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH---HHc--CCC
Confidence 44433 4667778777777665 2 33 4999999999988888877888889999999998755432 211 125
Q ss_pred CccEEEECcccC
Q 023441 107 SLNLLINASGIL 118 (282)
Q Consensus 107 ~id~lv~~ag~~ 118 (282)
++|+++...|+.
T Consensus 95 ~vdgIl~DlGvS 106 (192)
T d1m6ya2 95 KVDGILMDLGVS 106 (192)
T ss_dssp CEEEEEEECSCC
T ss_pred Ccceeeeccchh
Confidence 899999999985
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=93.80 E-value=0.015 Score=45.82 Aligned_cols=78 Identities=9% Similarity=-0.077 Sum_probs=58.9
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
....++++|=.||+.|. ++..|+++|.+ |+.++.++..++.+.+.....+.++.++..|+.+.+-
T Consensus 34 ~~~~~~~vLDiGCG~G~---~~~~l~~~g~~--v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~---------- 98 (246)
T d1y8ca_ 34 NNLVFDDYLDLACGTGN---LTENLCPKFKN--TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI---------- 98 (246)
T ss_dssp TTCCTTEEEEETCTTST---THHHHGGGSSE--EEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC----------
T ss_pred hCCCCCeEEEEeCcCCH---HHHHHHHhCCc--cEeeccchhhhhhccccccccCccceeeccchhhhcc----------
Confidence 44667899999998885 77889999987 9999988877666555555556689999999876531
Q ss_pred HcCCccEEEECccc
Q 023441 104 KYGSLNLLINASGI 117 (282)
Q Consensus 104 ~~~~id~lv~~ag~ 117 (282)
.+++|++++..+.
T Consensus 99 -~~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 99 -NRKFDLITCCLDS 111 (246)
T ss_dssp -SCCEEEEEECTTG
T ss_pred -cccccccceeeee
Confidence 1479999875443
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=93.68 E-value=0.036 Score=40.63 Aligned_cols=83 Identities=20% Similarity=0.223 Sum_probs=49.6
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC-------CCceeEEEeeCCChhHHHHHH---HH
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-------PERLDVLQLDLTVESTIEASA---KS 100 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~-------~~~v~~~~~Dls~~~~~~~~~---~~ 100 (282)
+-|. |.|-+|..+|+.|+++|++ |++.+|++++.+...+.-... -.+..++-.=+.+.+++++++ +.
T Consensus 3 IgiI-GlG~MG~~~A~~L~~~G~~--V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~ 79 (161)
T d1vpda2 3 VGFI-GLGIMGKPMSKNLLKAGYS--LVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENG 79 (161)
T ss_dssp EEEE-CCSTTHHHHHHHHHHTTCE--EEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred EEEE-ehhHHHHHHHHHHHHCCCe--EEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcc
Confidence 4455 4589999999999999988 999999987765433211100 013344444456666666665 33
Q ss_pred HHHHcCCccEEEECcc
Q 023441 101 IKEKYGSLNLLINASG 116 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag 116 (282)
+.....+=+++|.+.-
T Consensus 80 ~~~~~~~g~iiid~sT 95 (161)
T d1vpda2 80 IIEGAKPGTVLIDMSS 95 (161)
T ss_dssp HHHHCCTTCEEEECSC
T ss_pred hhhccCCCCEEEECCC
Confidence 4444333445554443
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=93.63 E-value=0.1 Score=38.62 Aligned_cols=79 Identities=13% Similarity=0.208 Sum_probs=50.9
Q ss_pred CCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC------------------CceeEEEeeCCChhHHHHH
Q 023441 36 ASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP------------------ERLDVLQLDLTVESTIEAS 97 (282)
Q Consensus 36 as~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~------------------~~v~~~~~Dls~~~~~~~~ 97 (282)
|.|-+|.++|++|+++|++ |.+.+|++++.+.+.+.-.... .....+..-+.+...+...
T Consensus 8 GlG~MG~~ma~~L~~~G~~--V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (178)
T d1pgja2 8 GLGVMGANLALNIAEKGFK--VAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAATDST 85 (178)
T ss_dssp CCSHHHHHHHHHHHHTTCC--EEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHHHHH
T ss_pred eehHHHHHHHHHHHHCCCe--EEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcchhhhh
Confidence 6788999999999999998 9999999887665443321111 1223344445555666666
Q ss_pred HHHHHHHcCCccEEEECcc
Q 023441 98 AKSIKEKYGSLNLLINASG 116 (282)
Q Consensus 98 ~~~~~~~~~~id~lv~~ag 116 (282)
+......+.+=++++...-
T Consensus 86 ~~~~~~~~~~~~iii~~st 104 (178)
T d1pgja2 86 IEQLKKVFEKGDILVDTGN 104 (178)
T ss_dssp HHHHHHHCCTTCEEEECCC
T ss_pred hhhhhhhccccceecccCc
Confidence 6666666554455555443
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=93.59 E-value=0.12 Score=37.81 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=53.8
Q ss_pred EEEEecCCCchhHHHHHHHHhcC-CCcEEEEeecCCCcc-cc-ccccc-------------ccCCCceeEEEeeCCChhH
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKN-DKGCVIATCRNPNGA-TG-LLDLK-------------NRFPERLDVLQLDLTVEST 93 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G-~~~~vi~~~r~~~~~-~~-~~~~~-------------~~~~~~v~~~~~Dls~~~~ 93 (282)
++.|.|++|-+|+++++...+.. .+ .+-..+|..... .. .-+.. ...-..+. +-.|+|.++.
T Consensus 6 kI~i~Ga~GrMG~~i~~~i~~~~~~~-lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~D-ViIDFs~p~~ 83 (162)
T d1diha1 6 RVAIAGAGGRMGRQLIQAALALEGVQ-LGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFD-VFIDFTRPEG 83 (162)
T ss_dssp EEEETTTTSHHHHHHHHHHHHSTTEE-CCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCS-EEEECSCHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCE-EEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccc-eEEEeccHHH
Confidence 68999999999999999888864 33 122333432211 00 00000 00011222 4489999999
Q ss_pred HHHHHHHHHHHcCCccEEEECcccC
Q 023441 94 IEASAKSIKEKYGSLNLLINASGIL 118 (282)
Q Consensus 94 ~~~~~~~~~~~~~~id~lv~~ag~~ 118 (282)
..+.++.+.+. ++..++=.+|..
T Consensus 84 ~~~~~~~a~~~--~~~~ViGTTG~~ 106 (162)
T d1diha1 84 TLNHLAFCRQH--GKGMVIGTTGFD 106 (162)
T ss_dssp HHHHHHHHHHT--TCEEEECCCCCC
T ss_pred HHHHHHHHHhc--cceeEEecCCCc
Confidence 99999887765 688888888864
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.34 E-value=0.06 Score=41.99 Aligned_cols=75 Identities=11% Similarity=-0.042 Sum_probs=55.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
+++++|=.||++| .++..|+++|++ |+.++.++.-++.+.+.....+.++.++.+|+.+.+- -+
T Consensus 41 ~~~~iLDiGcGtG---~~~~~l~~~~~~--v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~-----------~~ 104 (251)
T d1wzna1 41 EVRRVLDLACGTG---IPTLELAERGYE--VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF-----------KN 104 (251)
T ss_dssp CCCEEEEETCTTC---HHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC-----------CS
T ss_pred CCCEEEEeCCCCC---ccchhhcccceE--EEEEeeccccccccccccccccccchheehhhhhccc-----------cc
Confidence 4678999999887 446678899987 9999998877666666555556689999999877541 13
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
+.|.+++.-+.
T Consensus 105 ~fD~I~~~~~~ 115 (251)
T d1wzna1 105 EFDAVTMFFST 115 (251)
T ss_dssp CEEEEEECSSG
T ss_pred ccchHhhhhhh
Confidence 68988876443
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.31 E-value=0.11 Score=37.90 Aligned_cols=85 Identities=15% Similarity=0.091 Sum_probs=51.8
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccccc-------CCCceeEEEeeCCChhHHHHHHHH--
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNR-------FPERLDVLQLDLTVESTIEASAKS-- 100 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~-------~~~~v~~~~~Dls~~~~~~~~~~~-- 100 (282)
++.|. |.|-+|.++|++|+++|++ |.+.+|+.++.+.+...-.. .-....++-.-+.+.+..+.++..
T Consensus 3 kIg~I-GlG~MG~~iA~~L~~~g~~--v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~ 79 (162)
T d3cuma2 3 QIAFI-GLGHMGAPMATNLLKAGYL--LNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDD 79 (162)
T ss_dssp EEEEE-CCSTTHHHHHHHHHHTTCE--EEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTT
T ss_pred EEEEE-EEHHHHHHHHHHHHHCCCe--EEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccc
Confidence 35555 5688999999999999988 99999987765442221100 011344555556666666666543
Q ss_pred -HHHHcCCccEEEECccc
Q 023441 101 -IKEKYGSLNLLINASGI 117 (282)
Q Consensus 101 -~~~~~~~id~lv~~ag~ 117 (282)
+...+.+=++++.+.-.
T Consensus 80 ~~~~~l~~g~iiid~st~ 97 (162)
T d3cuma2 80 GLLAHIAPGTLVLECSTI 97 (162)
T ss_dssp CHHHHSCTTCEEEECSCC
T ss_pred cccccCCCCCEEEECCCC
Confidence 34444334555555544
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.28 E-value=0.18 Score=36.12 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=27.4
Q ss_pred cEEEEecCCCchhHHHHHHHHhcC--CCcEEEEeecCCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKN--DKGCVIATCRNPNG 66 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G--~~~~vi~~~r~~~~ 66 (282)
|++.|.||||-.|+.+.+.|+++. ....+.+.+++...
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~ 41 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG 41 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc
Confidence 468889999999999998888764 22346666555443
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.16 E-value=0.55 Score=33.15 Aligned_cols=87 Identities=15% Similarity=0.092 Sum_probs=61.4
Q ss_pred cCcEEEEecCC---CchhHHHHHHHHhcCCCcEEEEeecCCCcccc--cccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 27 KGGVSLVQGAS---RGIGLEFAKQLLEKNDKGCVIATCRNPNGATG--LLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 27 ~gk~vlItGas---~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~--~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
+-|++.|.|+| +..|..+++.|.+.|++ |+.+..+...... ....+.+.+..+..+.. +...+.+..+++++
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~--v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i-~vp~~~~~~~~~e~ 94 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDL-FVKPKLTMEYVEQA 94 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTCSEETTEECBSSGGGCSSCCSEEEE-CSCHHHHHHHHHHH
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCE--EEEECCcccccCCCcccccccccCccceEEEE-EeCHHHHHHHHHHH
Confidence 45899999998 58999999999999987 8888766554432 33444444444444222 24567788888888
Q ss_pred HHHcCCccEEEECcccC
Q 023441 102 KEKYGSLNLLINASGIL 118 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~ 118 (282)
.+. .+..++...|..
T Consensus 95 ~~~--g~k~v~~~~G~~ 109 (139)
T d2d59a1 95 IKK--GAKVVWFQYNTY 109 (139)
T ss_dssp HHH--TCSEEEECTTCC
T ss_pred HHh--CCCEEEEecccc
Confidence 776 477888888865
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.02 E-value=0.28 Score=35.28 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.7
Q ss_pred EEEEecCCCchhHHHHHHHHhcC
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKN 52 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G 52 (282)
++.|+||+|.+|.+++..|+..+
T Consensus 5 KV~IiGA~G~VG~~la~~l~~~~ 27 (154)
T d5mdha1 5 RVLVTGAAGQIAYSLLYSIGNGS 27 (154)
T ss_dssp EEEESSTTSHHHHTTHHHHHTTT
T ss_pred EEEEECCCCHHHHHHHHHHHHHH
Confidence 78999999999999999998654
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.073 Score=43.34 Aligned_cols=77 Identities=13% Similarity=0.121 Sum_probs=52.7
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccc-cccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLL-DLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~-~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
..+||+||-.||+.|+ ++..+++.|+. .|++++.++....... ........++.++..|+.+...-
T Consensus 33 ~~~~~~VLDiGcG~G~---lsl~aa~~Ga~-~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~--------- 99 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGI---LSMFAAKAGAK-KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLP--------- 99 (311)
T ss_dssp GTTTCEEEEETCTTSH---HHHHHHHTTCS-EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCS---------
T ss_pred cCCcCEEEEECCCCCH---HHHHHHHcCCC-EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCc---------
Confidence 4589999999998875 56677888985 6888887765332211 12223346899999999876421
Q ss_pred HcCCccEEEECc
Q 023441 104 KYGSLNLLINAS 115 (282)
Q Consensus 104 ~~~~id~lv~~a 115 (282)
..++|+++...
T Consensus 100 -~~~~D~Ivse~ 110 (311)
T d2fyta1 100 -VEKVDVIISEW 110 (311)
T ss_dssp -CSCEEEEEECC
T ss_pred -cccceEEEEee
Confidence 14789998753
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=92.94 E-value=0.017 Score=43.74 Aligned_cols=38 Identities=24% Similarity=0.171 Sum_probs=33.4
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG 69 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~ 69 (282)
|++.|.|+ |-+|..+|..++..|.+ |++.+++++.+++
T Consensus 5 ~~vaViGa-G~mG~~iA~~~a~~G~~--V~l~D~~~~~l~~ 42 (186)
T d1wdka3 5 KQAAVLGA-GIMGGGIAYQSASKGTP--ILMKDINEHGIEQ 42 (186)
T ss_dssp SSEEEECC-HHHHHHHHHHHHHTTCC--EEEECSSHHHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCe--EEEEECCHHHHhh
Confidence 57888998 88999999999999998 9999999876654
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.85 E-value=0.063 Score=39.75 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=34.8
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP 64 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~ 64 (282)
..+++||+++|.|.|.-+|+-++.-|+.+|+. |.++....
T Consensus 34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gat--Vt~~~~~t 73 (170)
T d1a4ia1 34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNAT--VTTCHSKT 73 (170)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCE--EEEECTTC
T ss_pred CcccccceEEEEecCCccchHHHHHHHhccCc--eEEEeccc
Confidence 46789999999999999999999999999987 77665544
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.84 E-value=0.054 Score=40.62 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=34.2
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
..+.||++.|.|... ||+.+++.+..-|.+ |+..+|...+
T Consensus 38 ~~l~gk~vgIiG~G~-IG~~va~~l~~~g~~--v~~~d~~~~~ 77 (181)
T d1qp8a1 38 PLIQGEKVAVLGLGE-IGTRVGKILAALGAQ--VRGFSRTPKE 77 (181)
T ss_dssp CCCTTCEEEEESCST-HHHHHHHHHHHTTCE--EEEECSSCCC
T ss_pred CcccCceEEEecccc-ccccceeeeeccccc--cccccccccc
Confidence 358999999999765 999999999999987 8888887644
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.75 E-value=0.31 Score=34.61 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=48.8
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccc-cccccc---cCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATG-LLDLKN---RFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~-~~~~~~---~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.+.|.|+ |.+|..+|..|+.+|.--.+++.+.+++..+. ..++.. ..+........ .|.+++
T Consensus 2 KI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~--~d~~~~----------- 67 (142)
T d1ojua1 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADYSLL----------- 67 (142)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SCGGGG-----------
T ss_pred EEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccC--CCHHHh-----------
Confidence 4567786 99999999999998854459999998877654 233321 12233333322 122222
Q ss_pred CCccEEEECcccCC
Q 023441 106 GSLNLLINASGILS 119 (282)
Q Consensus 106 ~~id~lv~~ag~~~ 119 (282)
..-|++|..+|...
T Consensus 68 ~~adiVvitag~~~ 81 (142)
T d1ojua1 68 KGSEIIVVTAGLAR 81 (142)
T ss_dssp TTCSEEEECCCCCC
T ss_pred ccccEEEEeccccC
Confidence 26899999999764
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.69 E-value=0.12 Score=44.08 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=57.6
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
+++.+|||.|+ ||||.++++.|+..|.. .+.+++.+.-+..++.... .+-.-|+.. ...+.+.+++++..
T Consensus 35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg-~i~lvD~D~Ve~sNL~RQf-------lf~~~diG~-~Ka~~a~~~l~~~n 104 (426)
T d1yovb1 35 LDTCKVLVIGA-GGLGCELLKNLALSGFR-QIHVIDMDTIDVSNLNRQF-------LFRPKDIGR-PKAEVAAEFLNDRV 104 (426)
T ss_dssp HHHCCEEEECS-STTHHHHHHHHHTTTCC-CEEEECCCBCCGGGGGTCT-------TCCGGGTTS-BHHHHHHHHHHHHS
T ss_pred HhcCeEEEECC-CHHHHHHHHHHHHcCCC-eEEEEECCCcchhhhcccc-------cCChhHcCc-HHHHHHHHHHHhhC
Confidence 67789999999 67999999999999984 6999999887666543211 111125554 34666677777776
Q ss_pred CCccEEEECccc
Q 023441 106 GSLNLLINASGI 117 (282)
Q Consensus 106 ~~id~lv~~ag~ 117 (282)
+.+.+..+..-+
T Consensus 105 p~v~i~~~~~~i 116 (426)
T d1yovb1 105 PNCNVVPHFNKI 116 (426)
T ss_dssp TTCCCEEECSCG
T ss_pred CCCceEeeeccc
Confidence 777777666554
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=92.59 E-value=0.068 Score=39.31 Aligned_cols=38 Identities=26% Similarity=0.235 Sum_probs=33.2
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeec
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCR 62 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r 62 (282)
..++.||+++|.|-|.-+|+-++.-|.++|+. |+.+..
T Consensus 32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gat--Vt~~h~ 69 (166)
T d1b0aa1 32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCT--TTVTHR 69 (166)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCE--EEEECS
T ss_pred CcccccceEEEEeccccccHHHHHHHHHhhcc--cccccc
Confidence 35789999999999999999999999999987 766543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=92.52 E-value=0.055 Score=40.29 Aligned_cols=76 Identities=9% Similarity=0.083 Sum_probs=53.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC-------------CCceeEEEeeCCChhH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF-------------PERLDVLQLDLTVEST 93 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~-------------~~~v~~~~~Dls~~~~ 93 (282)
.|++||..||+.| ..+..|+++|++ |+.++.++...+...+..+.. +..+.++.+|..+...
T Consensus 20 ~~~rvLd~GCG~G---~~a~~la~~G~~--V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 94 (201)
T d1pjza_ 20 PGARVLVPLCGKS---QDMSWLSGQGYH--VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 94 (201)
T ss_dssp TTCEEEETTTCCS---HHHHHHHHHCCE--EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred CCCEEEEecCcCC---HHHHHHHHcCCc--eEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence 6889999999888 467799999987 999999887766544433221 3456788899887653
Q ss_pred HHHHHHHHHHHcCCccEEEECcc
Q 023441 94 IEASAKSIKEKYGSLNLLINASG 116 (282)
Q Consensus 94 ~~~~~~~~~~~~~~id~lv~~ag 116 (282)
... ...|.++....
T Consensus 95 ~~~---------~~~D~i~~~~~ 108 (201)
T d1pjza_ 95 RDI---------GHCAAFYDRAA 108 (201)
T ss_dssp HHH---------HSEEEEEEESC
T ss_pred ccc---------cceeEEEEEee
Confidence 221 25677765443
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.39 E-value=0.07 Score=39.79 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=26.8
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN 65 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~ 65 (282)
.+.|.|+ |..|.++|..|++.|.+ |.+.+|..+
T Consensus 2 kI~ViGa-G~~GtalA~~la~~g~~--V~l~~r~~~ 34 (180)
T d1txga2 2 IVSILGA-GAMGSALSVPLVDNGNE--VRIWGTEFD 34 (180)
T ss_dssp EEEEESC-CHHHHHHHHHHHHHCCE--EEEECCGGG
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCE--EEEEEeccc
Confidence 3566666 78899999999999987 888888544
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=91.37 E-value=0.16 Score=40.12 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=54.6
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
....|+++|=.||.+|+ ++..+++.|++ |+.++.++...+.+.+.....+.++.++..|+.+. .
T Consensus 117 ~~~~g~~VLDiGcGsG~---l~i~aa~~g~~--V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~-----------~ 180 (254)
T d2nxca1 117 HLRPGDKVLDLGTGSGV---LAIAAEKLGGK--ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-----------L 180 (254)
T ss_dssp HCCTTCEEEEETCTTSH---HHHHHHHTTCE--EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-----------G
T ss_pred hcCccCEEEEcccchhH---HHHHHHhcCCE--EEEEECChHHHHHHHHHHHHcCCceeEEecccccc-----------c
Confidence 34579999999998886 33456778876 99999999988877766666666777887775321 1
Q ss_pred HcCCccEEEEC
Q 023441 104 KYGSLNLLINA 114 (282)
Q Consensus 104 ~~~~id~lv~~ 114 (282)
..++.|.++.|
T Consensus 181 ~~~~fD~V~an 191 (254)
T d2nxca1 181 PFGPFDLLVAN 191 (254)
T ss_dssp GGCCEEEEEEE
T ss_pred cccccchhhhc
Confidence 12579999876
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=91.17 E-value=0.52 Score=32.29 Aligned_cols=37 Identities=24% Similarity=0.189 Sum_probs=30.3
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcc
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGA 67 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~ 67 (282)
+|+++|.|| |.+|.++|..|++.|.+ |.++.+....+
T Consensus 30 ~~~vvIIGg-G~iG~E~A~~l~~~g~~--Vtli~~~~~~l 66 (121)
T d1d7ya2 30 QSRLLIVGG-GVIGLELAATARTAGVH--VSLVETQPRLM 66 (121)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCE--EEEEESSSSTT
T ss_pred CCeEEEECc-chhHHHHHHHhhcccce--EEEEeeccccc
Confidence 578877765 78999999999999988 88888876543
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=91.13 E-value=0.38 Score=34.55 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=39.6
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
|++.|.|+||.||.....-+.+.-.++.|++++-+..- +.+.+.+.++..+.. -+.|++..+.+.+..
T Consensus 2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~-~~L~~q~~~f~pk~v----~i~d~~~~~~l~~~l 69 (151)
T d1q0qa2 2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNV-TRMVEQCLEFSPRYA----VMDDEASAKLLKTML 69 (151)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCH-HHHHHHHHHHCCSEE----EESSHHHHHHHHHHH
T ss_pred CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcH-HHHHHHHHHHhhccc----ccccHHHHHHHHHHh
Confidence 68999999999999988877776555556555432221 223344444444433 234455444444433
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.04 E-value=0.27 Score=35.26 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=53.1
Q ss_pred cccCcEEEEecCCCc-hhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC--CceeEEEeeCCChhHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRG-IGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP--ERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 25 ~~~gk~vlItGas~g-iG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~--~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
.++|+++|=.||.+| +|. +.+.+|+. .|+.++.+....+.+.+.....+ .++++++.|..+ .+.
T Consensus 12 ~~~g~~vlDl~~GtG~~~i----ea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~------~l~-- 78 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAI----EAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER------AID-- 78 (152)
T ss_dssp CCCSCEEEEETCTTCHHHH----HHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH------HHH--
T ss_pred hCCCCeEEEcCCccCHHHH----HHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccc------ccc--
Confidence 478999998886554 554 45678886 79999999887766555554443 478999988532 122
Q ss_pred HHHcCCccEEEECcc
Q 023441 102 KEKYGSLNLLINASG 116 (282)
Q Consensus 102 ~~~~~~id~lv~~ag 116 (282)
...++.|+++.+.-
T Consensus 79 -~~~~~fDiIf~DPP 92 (152)
T d2esra1 79 -CLTGRFDLVFLDPP 92 (152)
T ss_dssp -HBCSCEEEEEECCS
T ss_pred -ccccccceeEechh
Confidence 22357999988753
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.97 E-value=0.17 Score=41.20 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=52.1
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccc--cccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDL--KNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~--~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..+||+||-.||+.|+ ++..+++.|+. .|+.++.++. ...+.+. .+....++.++..|+.+.+.
T Consensus 31 ~~~~~~VLDiGcG~G~---ls~~aa~~Ga~-~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~--------- 96 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGI---LCMFAAKAGAR-KVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVEL--------- 96 (316)
T ss_dssp HHTTCEEEEETCTTSH---HHHHHHHTTCS-EEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCC---------
T ss_pred cCCcCEEEEEecCCcH---HHHHHHHhCCC-EEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccc---------
Confidence 3589999999998875 56677888976 6888887653 3322222 23335689999999987641
Q ss_pred HHcCCccEEEECcc
Q 023441 103 EKYGSLNLLINASG 116 (282)
Q Consensus 103 ~~~~~id~lv~~ag 116 (282)
...++|+++....
T Consensus 97 -~~~~~D~ivs~~~ 109 (316)
T d1oria_ 97 -PVEKVDIIISEWM 109 (316)
T ss_dssp -SSSCEEEEEECCC
T ss_pred -ccceeEEEeeeee
Confidence 1246899887543
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=90.92 E-value=0.57 Score=32.09 Aligned_cols=37 Identities=24% Similarity=0.161 Sum_probs=30.1
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
++|+++|.| +|.+|.++|..|++.|.+ |.++.+....
T Consensus 29 ~~k~vvViG-gG~iG~E~A~~l~~~g~~--Vtlie~~~~~ 65 (123)
T d1nhpa2 29 EVNNVVVIG-SGYIGIEAAEAFAKAGKK--VTVIDILDRP 65 (123)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHTTCE--EEEEESSSST
T ss_pred CCCEEEEEC-ChHHHHHHHHHhhccceE--EEEEEecCcc
Confidence 467888885 568999999999999988 8888776543
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=90.57 E-value=0.15 Score=37.05 Aligned_cols=37 Identities=22% Similarity=0.079 Sum_probs=31.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNP 64 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~ 64 (282)
.||+++|.||+- .|.++|..|.+.|.++.|+++.+++
T Consensus 1 ~gkrivIvGgG~-~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGGGT-GGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECCSH-HHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECccH-HHHHHHHHHHHcCCCCcEEEEECCC
Confidence 489999999854 4899999999999877788887765
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=90.52 E-value=0.095 Score=35.40 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=32.3
Q ss_pred cccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC
Q 023441 21 SASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN 65 (282)
Q Consensus 21 ~~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~ 65 (282)
..+.+++||+|+|.|++. -|..+|.+|++.+.+ ++...|...
T Consensus 25 ~~~~~f~gK~VlVVG~g~-Sa~dia~~l~~~ak~--v~~~~~r~~ 66 (107)
T d2gv8a2 25 REPELFVGESVLVVGGAS-SANDLVRHLTPVAKH--PIYQSLLGG 66 (107)
T ss_dssp CCGGGGTTCCEEEECSSH-HHHHHHHHHTTTSCS--SEEEECTTC
T ss_pred cchhhcCCCeEEEECCCC-CHHHHHHHHHHhcCE--EEEEEecCc
Confidence 456789999999999874 478899999999887 555555443
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.19 E-value=0.14 Score=39.40 Aligned_cols=82 Identities=15% Similarity=0.104 Sum_probs=60.0
Q ss_pred ccc-cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC-CceeEEEeeCCChhHHHHHHHHH
Q 023441 24 VKW-KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP-ERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 24 ~~~-~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~-~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
+++ +|.+||..|+.+|--.++.-+|+ |.+ |+.+.++++-.+...+.+.+.+ .++.++..|..+..
T Consensus 74 L~l~~g~~VLeIGsGsGY~taila~l~--g~~--V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~--------- 140 (215)
T d1jg1a_ 74 ANLKPGMNILEVGTGSGWNAALISEIV--KTD--VYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF--------- 140 (215)
T ss_dssp HTCCTTCCEEEECCTTSHHHHHHHHHH--CSC--EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC---------
T ss_pred hccCccceEEEecCCCChhHHHHHHhh--Cce--eEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCC---------
Confidence 344 47899999999998888777776 455 8999998776665555555444 58999999987532
Q ss_pred HHHcCCccEEEECcccCC
Q 023441 102 KEKYGSLNLLINASGILS 119 (282)
Q Consensus 102 ~~~~~~id~lv~~ag~~~ 119 (282)
...++.|.++.+++...
T Consensus 141 -~~~~pfD~Iiv~~a~~~ 157 (215)
T d1jg1a_ 141 -PPKAPYDVIIVTAGAPK 157 (215)
T ss_dssp -GGGCCEEEEEECSBBSS
T ss_pred -cccCcceeEEeeccccc
Confidence 12258999999888753
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.16 E-value=0.2 Score=37.26 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=53.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC--CceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP--ERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~--~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+|.++|=.||.+| .++.+|++.+.+ |+.++.+++..+.+.+..++.+ .+++++++|..+. ...
T Consensus 33 ~g~~VLDiGcGsG---~~s~~lA~~~~~--V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~----------~~~ 97 (186)
T d1l3ia_ 33 KNDVAVDVGCGTG---GVTLELAGRVRR--VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA----------LCK 97 (186)
T ss_dssp TTCEEEEESCTTS---HHHHHHHTTSSE--EEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH----------HTT
T ss_pred CCCEEEEEECCeE---cccccccccceE--EEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc----------ccc
Confidence 5889999998776 334456667665 9999999988877666665554 5899999885221 123
Q ss_pred cCCccEEEECccc
Q 023441 105 YGSLNLLINASGI 117 (282)
Q Consensus 105 ~~~id~lv~~ag~ 117 (282)
...+|.++.+.+.
T Consensus 98 ~~~~D~v~~~~~~ 110 (186)
T d1l3ia_ 98 IPDIDIAVVGGSG 110 (186)
T ss_dssp SCCEEEEEESCCT
T ss_pred cCCcCEEEEeCcc
Confidence 3579999977543
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=89.85 E-value=0.12 Score=40.62 Aligned_cols=35 Identities=23% Similarity=0.065 Sum_probs=27.8
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN 65 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~ 65 (282)
||+|+|.||.- =|.+.|.+|+++|.+ |+++.++..
T Consensus 1 ~KkV~IIGaG~-aGL~aA~~La~~G~~--V~vlE~~~~ 35 (373)
T d1seza1 1 AKRVAVIGAGV-SGLAAAYKLKIHGLN--VTVFEAEGK 35 (373)
T ss_dssp CCEEEEECCSH-HHHHHHHHHHTTSCE--EEEECSSSS
T ss_pred CCEEEEECcCH-HHHHHHHHHHhCCCC--EEEEeCCCC
Confidence 68899998754 488899999999987 777766543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=89.81 E-value=0.14 Score=39.16 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=52.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC-CceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP-ERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~-~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.|.+||-.||.+|--.++.-++...+. .|+.++.+++..+...+.....+ .++.++..|..+... ..
T Consensus 75 ~g~~VLdiG~GtG~~s~~la~~~~~~g--~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~----------~~ 142 (213)
T d1dl5a1 75 KGMRVLEIGGGTGYNAAVMSRVVGEKG--LVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP----------EF 142 (213)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTC--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG----------GG
T ss_pred ccceEEEecCccchhHHHHHHHhCCCC--cEEEeecchhhHHHhhhhHhhhcccccccccCchHHccc----------cc
Confidence 478999999877765554434443333 49999998887766555544433 367788877664321 12
Q ss_pred CCccEEEECcccC
Q 023441 106 GSLNLLINASGIL 118 (282)
Q Consensus 106 ~~id~lv~~ag~~ 118 (282)
++.|.++.+++..
T Consensus 143 ~~fD~I~~~~~~~ 155 (213)
T d1dl5a1 143 SPYDVIFVTVGVD 155 (213)
T ss_dssp CCEEEEEECSBBS
T ss_pred cchhhhhhhccHH
Confidence 4799999888764
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=89.15 E-value=0.54 Score=35.29 Aligned_cols=39 Identities=26% Similarity=0.135 Sum_probs=33.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN 65 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~ 65 (282)
.++.||++.|.|. |.||+.+|+.|..-|.+ |+..++...
T Consensus 39 ~el~gk~vgIiG~-G~IG~~va~~l~~fg~~--V~~~d~~~~ 77 (197)
T d1j4aa1 39 REVRDQVVGVVGT-GHIGQVFMQIMEGFGAK--VITYDIFRN 77 (197)
T ss_dssp CCGGGSEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSSCC
T ss_pred ccccCCeEEEecc-cccchhHHHhHhhhccc--ccccCcccc
Confidence 5789999999985 78999999999999988 887776543
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.94 E-value=0.3 Score=36.40 Aligned_cols=41 Identities=12% Similarity=-0.073 Sum_probs=33.8
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN 65 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~ 65 (282)
...++.|+++.|. |.|.||+.+|+.+...|.+ |+..++...
T Consensus 38 ~~~~l~~~~vgii-G~G~IG~~va~~l~~fg~~--v~~~d~~~~ 78 (188)
T d1sc6a1 38 GSFEARGKKLGII-GYGHIGTQLGILAESLGMY--VYFYDIENK 78 (188)
T ss_dssp -CCCSTTCEEEEE-CCSHHHHHHHHHHHHTTCE--EEEECSSCC
T ss_pred ccccccceEEEEe-ecccchhhhhhhcccccce--Eeecccccc
Confidence 3457899999998 5788999999999999987 888887654
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=88.93 E-value=2.3 Score=28.66 Aligned_cols=84 Identities=23% Similarity=0.178 Sum_probs=55.7
Q ss_pred cEEEEecCC---CchhHHHHHHHHhcCCCcEEEEeecCCCcccc--cccccccCCCceeEEEeeCCChhHHHHHHHHHHH
Q 023441 29 GVSLVQGAS---RGIGLEFAKQLLEKNDKGCVIATCRNPNGATG--LLDLKNRFPERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 29 k~vlItGas---~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~--~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
|++.|.|+| +..|..+.+.|.+.|++ |+.+..+.+.... ....+.+.+..+.... =....+.+.++++++.+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~--V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vv-i~vp~~~~~~~l~~~~~ 78 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFE--VLPVNPNYDEIEGLKCYRSVRELPKDVDVIV-FVVPPKVGLQVAKEAVE 78 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTCSEETTEECBSSGGGSCTTCCEEE-ECSCHHHHHHHHHHHHH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCE--EEEEccccccccCccccccchhccccceEEE-EEeCHHHHHHHHHHHHh
Confidence 789999997 56899999999999987 8887665544332 3333334444444322 22456677788888776
Q ss_pred HcCCccEEEECccc
Q 023441 104 KYGSLNLLINASGI 117 (282)
Q Consensus 104 ~~~~id~lv~~ag~ 117 (282)
. .+..++...|.
T Consensus 79 ~--g~k~v~~~~g~ 90 (116)
T d1y81a1 79 A--GFKKLWFQPGA 90 (116)
T ss_dssp T--TCCEEEECTTS
T ss_pred c--CCceEEeccch
Confidence 5 46677666554
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.87 E-value=0.1 Score=40.24 Aligned_cols=78 Identities=6% Similarity=0.107 Sum_probs=53.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccc------------------ccCCCceeEEEeeC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK------------------NRFPERLDVLQLDL 88 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~------------------~~~~~~v~~~~~Dl 88 (282)
.|++||..||..| ..+..|+++|++ |+.++-++...+.+.+.. ...+.++.++.+|+
T Consensus 45 ~~~rvLd~GCG~G---~~a~~LA~~G~~--V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 119 (229)
T d2bzga1 45 SGLRVFFPLCGKA---VEMKWFADRGHS--VVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI 119 (229)
T ss_dssp CSCEEEETTCTTC---THHHHHHHTTCE--EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred CCCEEEEeCCCCc---HHHHHHHhCCCc--EEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence 6789999999887 458889999987 999988876654322211 12245788999998
Q ss_pred CChhHHHHHHHHHHHHcCCccEEEECcccC
Q 023441 89 TVESTIEASAKSIKEKYGSLNLLINASGIL 118 (282)
Q Consensus 89 s~~~~~~~~~~~~~~~~~~id~lv~~ag~~ 118 (282)
.+.... ..+..|+++-.....
T Consensus 120 ~~l~~~---------~~~~fd~i~~~~~l~ 140 (229)
T d2bzga1 120 FDLPRT---------NIGKFDMIWDRGALV 140 (229)
T ss_dssp GGGGGS---------CCCCEEEEEESSSTT
T ss_pred hhcccc---------ccCceeEEEEEEEEE
Confidence 765421 114577776655543
|
| >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.70 E-value=0.24 Score=35.89 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=53.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCC---ChhHHHHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLT---VESTIEASAKSIKE 103 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls---~~~~~~~~~~~~~~ 103 (282)
+|+++.|.+.+||.|-.++..+.+.|.+ +..-+++..+++.+.+..+.. .--++|++ +.+.+.++++.+.+
T Consensus 2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~----l~~l~~~t~~~L~~~lp~~~~--~~NPlD~~~~~~~~~~~~~l~~~~~ 75 (163)
T d2csua3 2 RGNKVAIMTNAGGPGVLTADELDKRGLK----LATLEEKTIEELRSFLPPMAA--VKNPVDMIASARGEDYYRTAKLLLQ 75 (163)
T ss_dssp SSSEEEEEESCHHHHHHHHHHHHTTTCE----ECCCCHHHHHHHHHHSCTTCE--ESSEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECChHHHHHHHHHHHHcCCc----cCCCCHHHHHHHHHhCCCccc--CCCcccccCCCCHHHHHHHHHHHHc
Confidence 6899999999999999999999999854 333333333444455543321 11234543 45667777766655
Q ss_pred HcCCccEEEECcc
Q 023441 104 KYGSLNLLINASG 116 (282)
Q Consensus 104 ~~~~id~lv~~ag 116 (282)
. +.+|.++....
T Consensus 76 d-~~vd~v~v~~~ 87 (163)
T d2csua3 76 D-PNVDMLIAICV 87 (163)
T ss_dssp S-TTCSEEEEEEE
T ss_pred C-CCcCEEEEeec
Confidence 4 56898765543
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.25 E-value=0.24 Score=36.13 Aligned_cols=42 Identities=29% Similarity=0.336 Sum_probs=35.8
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
+-+.+.||+++|.|-. -+|+.+|+.|...|++ |++...++.+
T Consensus 18 t~~~l~Gk~v~V~GyG-~iG~g~A~~~rg~G~~--V~v~e~dp~~ 59 (163)
T d1li4a1 18 TDVMIAGKVAVVAGYG-DVGKGCAQALRGFGAR--VIITEIDPIN 59 (163)
T ss_dssp HCCCCTTCEEEEECCS-HHHHHHHHHHHHTTCE--EEEECSCHHH
T ss_pred hCceecCCEEEEeccc-cccHHHHHHHHhCCCe--eEeeecccch
Confidence 4467899999999865 7999999999999988 8888887643
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=88.18 E-value=0.27 Score=36.97 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=34.3
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
..++.||++.|.| .|.||+++|+.+..-|.+ |+..++....
T Consensus 44 ~~eL~gktvgIiG-~G~IG~~va~~l~~fg~~--v~~~d~~~~~ 84 (193)
T d1mx3a1 44 AARIRGETLGIIG-LGRVGQAVALRAKAFGFN--VLFYDPYLSD 84 (193)
T ss_dssp CCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCE--EEEECTTSCT
T ss_pred ceeeeCceEEEec-cccccccceeeeeccccc--eeeccCcccc
Confidence 4668999999995 578999999999999987 8888876543
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.10 E-value=0.3 Score=37.24 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=30.1
Q ss_pred cCcEEEEecCCCchhHH-----HHHHHHhcCCCcEEEEeecCC
Q 023441 27 KGGVSLVQGASRGIGLE-----FAKQLLEKNDKGCVIATCRNP 64 (282)
Q Consensus 27 ~gk~vlItGas~giG~a-----~a~~la~~G~~~~vi~~~r~~ 64 (282)
+||++.|+|+-||.|+. +|..|+++|.+ |++++-|.
T Consensus 1 m~~vIav~~~kGGvGKTtia~nLA~~la~~g~~--VlliD~D~ 41 (237)
T d1g3qa_ 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRK--VLAVDGDL 41 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCC--EEEEECCT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCC--EEEEeCCC
Confidence 47999999999999886 67888889988 88887654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=88.08 E-value=0.2 Score=37.91 Aligned_cols=76 Identities=14% Similarity=0.047 Sum_probs=55.4
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcC
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYG 106 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~ 106 (282)
++.+||=.||++|. ++..|++.|++ |+.++.++...+.+.+.....+.++.++..|..+...- .+
T Consensus 37 ~~~~ILDiGcG~G~---~~~~la~~~~~--v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~----------~~ 101 (226)
T d1ve3a1 37 KRGKVLDLACGVGG---FSFLLEDYGFE--VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFE----------DK 101 (226)
T ss_dssp SCCEEEEETCTTSH---HHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSC----------TT
T ss_pred CCCEEEEECCCcch---hhhhHhhhhcc--cccccccccchhhhhhhhcccccccccccccccccccc----------Cc
Confidence 35689999998876 66788889987 99999887777665555555556788888888875411 13
Q ss_pred CccEEEECccc
Q 023441 107 SLNLLINASGI 117 (282)
Q Consensus 107 ~id~lv~~ag~ 117 (282)
..|+++....+
T Consensus 102 ~fD~I~~~~~l 112 (226)
T d1ve3a1 102 TFDYVIFIDSI 112 (226)
T ss_dssp CEEEEEEESCG
T ss_pred CceEEEEecch
Confidence 68998877544
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=87.84 E-value=0.97 Score=30.44 Aligned_cols=35 Identities=20% Similarity=0.012 Sum_probs=28.3
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
|+++|.|| |-+|.++|..|++.|.+ |.++.|....
T Consensus 22 ~~vvIiGg-G~ig~E~A~~l~~~G~~--Vtlve~~~~~ 56 (116)
T d1gesa2 22 ERVAVVGA-GYIGVELGGVINGLGAK--THLFEMFDAP 56 (116)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSSSSS
T ss_pred CEEEEECC-ChhhHHHHHHhhccccE--EEEEeecchh
Confidence 66777664 68899999999999988 8888886654
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=87.82 E-value=3.2 Score=33.26 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=54.5
Q ss_pred ccCcEEEEecCC-CchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC-CceeEEEeeCCChhHHHHHHHHHHH
Q 023441 26 WKGGVSLVQGAS-RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP-ERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 26 ~~gk~vlItGas-~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~-~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.+|++||=.+|. |+++.+ +++.+.+ |+.++.++...+.+.+.....+ +++.++.+|..+.. +....
T Consensus 144 ~~g~rVLDl~~gtG~~s~~----~a~g~~~--V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~------~~~~~ 211 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALH----LALGFRE--VVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLL------RRLEK 211 (318)
T ss_dssp CCEEEEEEETCTTTHHHHH----HHHHEEE--EEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHH------HHHHH
T ss_pred hCCCeeeccCCCCcHHHHH----HHhcCCc--EEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHh------hhhHh
Confidence 478999988865 454433 4444554 9999999988877666655555 36888888875432 22233
Q ss_pred HcCCccEEEECcccC
Q 023441 104 KYGSLNLLINASGIL 118 (282)
Q Consensus 104 ~~~~id~lv~~ag~~ 118 (282)
.-.+.|.++.+....
T Consensus 212 ~~~~fD~Vi~DpP~~ 226 (318)
T d1wxxa2 212 EGERFDLVVLDPPAF 226 (318)
T ss_dssp TTCCEEEEEECCCCS
T ss_pred hhcCCCEEEEcCCcc
Confidence 335799999997654
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=87.56 E-value=0.59 Score=31.72 Aligned_cols=82 Identities=10% Similarity=0.140 Sum_probs=53.7
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGS 107 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~ 107 (282)
||++||.--..-+-..+...|.+.|++ |+..+.+...+- +.+.+....+.++-.++-+.+.+ ++++++++..+.
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g~~--v~~~a~~~~~al---~~~~~~~~dliilD~~mp~~~G~-e~~~~ir~~~~~ 74 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAGYE--VAGEATNGREAV---EKYKELKPDIVTMDITMPEMNGI-DAIKEIMKIDPN 74 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCE--EEEEESSHHHHH---HHHHHHCCSEEEEECSCGGGCHH-HHHHHHHHHCTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCc--eEEEECCHHHHH---HHHHhccCCEEEEecCCCCCCHH-HHHHHHHHhCCC
Confidence 899999999999999999999999987 766555543322 22222223444444444444443 567777777777
Q ss_pred ccEEEECc
Q 023441 108 LNLLINAS 115 (282)
Q Consensus 108 id~lv~~a 115 (282)
+-+++..+
T Consensus 75 ~pvi~ls~ 82 (118)
T d1u0sy_ 75 AKIIVCSA 82 (118)
T ss_dssp CCEEEEEC
T ss_pred CcEEEEEc
Confidence 87777653
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.55 E-value=0.32 Score=35.82 Aligned_cols=38 Identities=11% Similarity=-0.061 Sum_probs=28.8
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
.+|+|+|.|| |..|...|..|+++|.+ .|.+..|....
T Consensus 3 ~~~kVaIIGa-GpaGl~aA~~l~~~G~~-~V~v~E~~~~~ 40 (196)
T d1gtea4 3 YSAKIALLGA-GPASISCASFLARLGYS-DITIFEKQEYV 40 (196)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHHTTCC-CEEEEESSSSC
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHCCCC-eEEEEEecCcc
Confidence 4688888886 56799999999999983 27677776543
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=87.48 E-value=0.28 Score=35.27 Aligned_cols=54 Identities=26% Similarity=0.217 Sum_probs=33.7
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeE
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDV 83 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~ 83 (282)
|++.|.|+||.||.....-+.+.-.++.|++++-+. ..+.+.+...++..+..+
T Consensus 3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~-N~~~L~~q~~ef~Pk~v~ 56 (150)
T d1r0ka2 3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR-NVKDLADAAKRTNAKRAV 56 (150)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS-CHHHHHHHHHHTTCSEEE
T ss_pred cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC-CHHHHHHHHHhhccccce
Confidence 799999999999999887776654344455544332 222344444555555443
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.43 E-value=1.2 Score=30.23 Aligned_cols=33 Identities=33% Similarity=0.298 Sum_probs=26.5
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN 63 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~ 63 (282)
-|+++|.|| |-||.++|..|.+.|.+ |.++.|+
T Consensus 20 P~~vvIIGg-G~iG~E~A~~l~~lG~~--Vtii~~~ 52 (122)
T d1h6va2 20 PGKTLVVGA-SYVALECAGFLAGIGLD--VTVMVRS 52 (122)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCC--EEEEESS
T ss_pred CCeEEEECC-CccHHHHHHHHhhcCCe--EEEEEec
Confidence 356777765 68999999999999999 7776664
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.27 E-value=0.27 Score=38.16 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=28.8
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHh-cCCCcEEEEee
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLE-KNDKGCVIATC 61 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~-~G~~~~vi~~~ 61 (282)
.+++|++++|-| .|-+|..+|+.|++ .|+. |+.++
T Consensus 27 ~~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~--vv~vs 62 (234)
T d1b26a1 27 IDPKKATVAVQG-FGNVGQFAALLISQELGSK--VVAVS 62 (234)
T ss_dssp CCTTTCEEEEEC-CSHHHHHHHHHHHHHHCCE--EEEEE
T ss_pred CCcCCCEEEEEC-CCHHHHHHHHHHHHhcCCc--eEEee
Confidence 578999999986 88899999999986 5987 55544
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.24 E-value=0.5 Score=35.06 Aligned_cols=42 Identities=19% Similarity=0.075 Sum_probs=34.7
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
...++.||++.|.| .|.||+++++.+..-|.+ |+..++...+
T Consensus 38 ~~~~l~~k~vgiiG-~G~IG~~va~~~~~fg~~--v~~~d~~~~~ 79 (184)
T d1ygya1 38 SGTEIFGKTVGVVG-LGRIGQLVAQRIAAFGAY--VVAYDPYVSP 79 (184)
T ss_dssp CBCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCE--EEEECTTSCH
T ss_pred ccccccceeeeecc-ccchhHHHHHHhhhccce--EEeecCCCCh
Confidence 44678899999888 689999999999998977 8888876544
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.21 E-value=2 Score=34.14 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=21.2
Q ss_pred CCchhHHHHHHHHhcCCCcEEEEeecC
Q 023441 37 SRGIGLEFAKQLLEKNDKGCVIATCRN 63 (282)
Q Consensus 37 s~giG~a~a~~la~~G~~~~vi~~~r~ 63 (282)
||..|.++|+.|..+|+. |+++.+.
T Consensus 45 SGk~G~alA~~~~~~Ga~--V~li~g~ 69 (290)
T d1p9oa_ 45 SGRRGATSAEAFLAAGYG--VLFLYRA 69 (290)
T ss_dssp CCHHHHHHHHHHHHTTCE--EEEEEET
T ss_pred chHHHHHHHHHHHHcCCE--EEEEecC
Confidence 467999999999999998 7777554
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.10 E-value=0.96 Score=30.84 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=29.2
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
|+++|.|| |-||.++|..|++.|.+ |.++.+...-
T Consensus 24 ~~~vIiG~-G~ig~E~A~~l~~lG~~--Vtii~~~~~~ 58 (122)
T d1v59a2 24 KRLTIIGG-GIIGLEMGSVYSRLGSK--VTVVEFQPQI 58 (122)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSSSSS
T ss_pred CeEEEECC-CchHHHHHHHHHhhCcc--eeEEEecccc
Confidence 67888875 67999999999999998 8888776644
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.06 E-value=0.84 Score=32.27 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=27.8
Q ss_pred EEEEecCCCchhHHHHHHHHhcCC-CcEEEEeecCCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKND-KGCVIATCRNPNGA 67 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~-~~~vi~~~r~~~~~ 67 (282)
+|.|.||||-.|.++.+-|.+++. ...+..++.+....
T Consensus 4 nVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~G 42 (144)
T d2hjsa1 4 NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAG 42 (144)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTT
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCC
Confidence 688999999999999999987652 23366665554443
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=86.87 E-value=0.17 Score=36.28 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=31.9
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD 72 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~ 72 (282)
++.+.|+ |-+|.++++.|.+.|.+ .|.+.+|++++.+.+.+
T Consensus 2 kI~fIG~-G~MG~ai~~~l~~~~~~-~i~v~~r~~~~~~~l~~ 42 (152)
T d1yqga2 2 NVYFLGG-GNMAAAVAGGLVKQGGY-RIYIANRGAEKRERLEK 42 (152)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHCSC-EEEEECSSHHHHHHHHH
T ss_pred EEEEEcC-cHHHHHHHHHHHHCCCC-cEEEEeCChhHHHHhhh
Confidence 3567766 99999999999999843 59999999877655433
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.40 E-value=0.48 Score=32.06 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=29.1
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
|+++|.|| |-+|.++|..|++.|.+ |.++.|...-
T Consensus 23 ~~v~IiGg-G~ig~E~A~~l~~~G~~--Vtlve~~~~i 57 (117)
T d1ebda2 23 KSLVVIGG-GYIGIELGTAYANFGTK--VTILEGAGEI 57 (117)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCE--EEEEESSSSS
T ss_pred CeEEEECC-CccceeeeeeecccccE--EEEEEeccee
Confidence 77888876 67899999999999988 8888776654
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=86.39 E-value=0.57 Score=34.98 Aligned_cols=42 Identities=14% Similarity=0.021 Sum_probs=34.2
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
...+++||++.|.|. |.||+++++.+...|.+ |+..++....
T Consensus 41 ~~~~l~g~tvgIiG~-G~IG~~va~~l~~fg~~--v~~~d~~~~~ 82 (191)
T d1gdha1 41 VGEKLDNKTLGIYGF-GSIGQALAKRAQGFDMD--IDYFDTHRAS 82 (191)
T ss_dssp CBCCCTTCEEEEECC-SHHHHHHHHHHHTTTCE--EEEECSSCCC
T ss_pred ccceecccceEEeec-ccchHHHHHHHHhhccc--cccccccccc
Confidence 446788999998874 78999999999999987 8887776544
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=86.30 E-value=0.4 Score=37.65 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=33.6
Q ss_pred ccccCcEEEEecCCCchhHHH-----HHHHHhcCCCcEEEEeecCCCc
Q 023441 24 VKWKGGVSLVQGASRGIGLEF-----AKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~-----a~~la~~G~~~~vi~~~r~~~~ 66 (282)
+.=.|++++|+.|=||.|+.+ |..|+++|.+ |++++-+++.
T Consensus 15 ~~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~r--VllvD~Dp~~ 60 (279)
T d1ihua2 15 IARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFD--VHLTTSDPAA 60 (279)
T ss_dssp HHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC--EEEEESCCC-
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCc--EEEEeCCCCC
Confidence 334678899998899999985 7999999988 9999888753
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=86.29 E-value=0.36 Score=37.65 Aligned_cols=35 Identities=29% Similarity=0.207 Sum_probs=30.5
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEee
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC 61 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~ 61 (282)
.+++||+++|-| .|-.|..+|+.|.+.|++ |+.++
T Consensus 27 ~~l~g~~v~IqG-fGnVG~~~a~~L~~~Gak--vv~vs 61 (242)
T d1v9la1 27 GGIEGKTVAIQG-MGNVGRWTAYWLEKMGAK--VIAVS 61 (242)
T ss_dssp SCCTTCEEEEEC-CSHHHHHHHHHHHTTTCE--EEEEE
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCe--EEEee
Confidence 479999999997 788999999999999987 66544
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=86.21 E-value=0.29 Score=38.49 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=30.9
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEee
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC 61 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~ 61 (282)
..+++||+++|.| .|-+|..+++.|.+.|++ |+.++
T Consensus 31 ~~~l~g~~v~IQG-fGnVG~~~a~~L~e~Gak--vvavs 66 (255)
T d1bgva1 31 NDTLVGKTVALAG-FGNVAWGAAKKLAELGAK--AVTLS 66 (255)
T ss_dssp TCCSTTCEEEECC-SSHHHHHHHHHHHHHTCE--EEEEE
T ss_pred CCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCe--EEEEe
Confidence 3578999999999 688999999999999998 65543
|
| >d2fr1a2 c.2.1.2 (A:1448-1656) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=85.89 E-value=5.1 Score=29.45 Aligned_cols=143 Identities=8% Similarity=-0.029 Sum_probs=73.1
Q ss_pred cccCcEEEEecC--CCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGA--SRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 25 ~~~gk~vlItGa--s~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
...|.+.++... ......+++..|...|.. +..+.-+.. .+.+ .+.+ ..
T Consensus 22 ~~~g~~lv~~~~~~~~~~~~~l~~~l~~~g~~--~~~~~~~~~-----------------------~~~~---~l~~-~~ 72 (209)
T d2fr1a2 22 RLDGTWLVAKYAGTADETSTAAREALESAGAR--VRELVVDAR-----------------------CGRD---ELAE-RL 72 (209)
T ss_dssp CCCSEEEEEECTTSSHHHHHHHHHHHHTTSCE--EEEEECCTT-----------------------CCHH---HHHH-HH
T ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHHhCCCe--EEEecCCCc-----------------------cCHH---HHHH-Hh
Confidence 344554444433 334777888889888876 433221110 1222 2222 23
Q ss_pred HHcCCccEEEECcccCCCCCCCCCcccccccchhhhhhhhhhhhcHHHHHHHHhhhhhhcCCCCCccceeEEEEeecccc
Q 023441 103 EKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGTGIERDVAVVANLSARVG 182 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~g~~~~~~~iv~~ss~~~ 182 (282)
...+.++.+|+-.+....+ .. .. ......+...+.+++.+... .... .+.+++....
T Consensus 73 ~~~~~~~~vv~l~~~~~~~------~~--~~------~~~~~~~~~~l~l~qal~~~---~~~~------~l~~vT~~a~ 129 (209)
T d2fr1a2 73 RSVGEVAGVLSLLAVDEAE------PE--EA------PLALASLADTLSLVQAMVSA---ELGC------PLWTVTESAV 129 (209)
T ss_dssp TTSCCCSEEEECTTTTCCC------CS--SC------GGGCHHHHHHHHHHHHHHHT---TCCC------CEEEEEESCS
T ss_pred hccCCCCeEEEeCCCCCCC------Cc--ch------hHHHHHHHHHHHHHHHHHhC---CCCC------cEEEEEcCCc
Confidence 3446789999987764311 00 00 11122344555666665432 1111 3444444222
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCeEEEEE
Q 023441 183 SIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILL 225 (282)
Q Consensus 183 ~~~~~~~~~~~~Y~~sKa~~~~l~~~la~e~~~~~~~i~v~~i 225 (282)
... .....-+...+++.+|.|+++.|+... .++.+.+
T Consensus 130 ~~~----~~d~~~~p~~A~l~Gl~r~~~~E~P~l--~~~~vDl 166 (209)
T d2fr1a2 130 ATG----PFERVRNAAHGALWGVGRVIALENPAV--WGGLVDV 166 (209)
T ss_dssp CSS----TTSCCSCGGGHHHHHHHHHHHHHCGGG--EEEEEEE
T ss_pred ccC----CCcccCCHhHHhHHHHHHHHHHhCCCc--eEEEEEC
Confidence 111 122334577899999999999998754 4555543
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.68 E-value=0.51 Score=38.35 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=50.8
Q ss_pred cccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccccc--ccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 25 KWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLK--NRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 25 ~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~--~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
..+|++||-.||+.|+ ++..++++|++ .|++++.++ ..+.+.+.. .....+++++..|+.+.+--
T Consensus 36 ~~~~~~VLDlGcGtG~---ls~~aa~~Ga~-~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~-------- 102 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGI---LSMFAAKHGAK-HVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLP-------- 102 (328)
T ss_dssp HHTTCEEEEETCTTSH---HHHHHHHTCCS-EEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------
T ss_pred cCCcCEEEEeCCCCCH---HHHHHHHhCCC-EEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCc--------
Confidence 3589999999998774 45667788986 588887664 332222222 23345899999998875310
Q ss_pred HHcCCccEEEECcc
Q 023441 103 EKYGSLNLLINASG 116 (282)
Q Consensus 103 ~~~~~id~lv~~ag 116 (282)
..++|+++...-
T Consensus 103 --~~~~D~i~se~~ 114 (328)
T d1g6q1_ 103 --FPKVDIIISEWM 114 (328)
T ss_dssp --SSCEEEEEECCC
T ss_pred --ccceeEEEEEec
Confidence 136888887543
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=85.63 E-value=0.33 Score=37.17 Aligned_cols=34 Identities=29% Similarity=0.205 Sum_probs=27.8
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCC
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPN 65 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~ 65 (282)
|+|+|.|| |-.|.++|.+|+++|.+ |+++.|+..
T Consensus 7 ~kVvVIGa-GiaGl~~A~~L~~~G~~--V~vier~~~ 40 (268)
T d1c0pa1 7 KRVVVLGS-GVIGLSSALILARKGYS--VHILARDLP 40 (268)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCE--EEEEESSCT
T ss_pred CcEEEECc-cHHHHHHHHHHHHCCCC--EEEEeCCCC
Confidence 56888876 45699999999999988 899888653
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.49 E-value=0.28 Score=37.75 Aligned_cols=80 Identities=13% Similarity=0.080 Sum_probs=56.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC------CCceeEEEeeCCChhHHHHHHHH
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF------PERLDVLQLDLTVESTIEASAKS 100 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~------~~~v~~~~~Dls~~~~~~~~~~~ 100 (282)
.|.+||-.|+.+|--.++.-++...... |+.++++++-.+...+.+.+. -.++.+...|..+...
T Consensus 76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~--V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~------- 146 (224)
T d1i1na_ 76 EGAKALDVGSGSGILTACFARMVGCTGK--VIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA------- 146 (224)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCE--EEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-------
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCCCce--EEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc-------
Confidence 4789999999999887776677766655 999999887766544443322 1367778888653221
Q ss_pred HHHHcCCccEEEECcccC
Q 023441 101 IKEKYGSLNLLINASGIL 118 (282)
Q Consensus 101 ~~~~~~~id~lv~~ag~~ 118 (282)
..++.|.++.+++..
T Consensus 147 ---~~~~fD~I~~~~~~~ 161 (224)
T d1i1na_ 147 ---EEAPYDAIHVGAAAP 161 (224)
T ss_dssp ---GGCCEEEEEECSBBS
T ss_pred ---hhhhhhhhhhhcchh
Confidence 124799999998764
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=85.26 E-value=0.6 Score=33.24 Aligned_cols=38 Identities=11% Similarity=0.054 Sum_probs=30.6
Q ss_pred cCcEEEEec-CCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 27 KGGVSLVQG-ASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 27 ~gk~vlItG-as~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
.++.++|.+ +++-||.++|..|+++|.+ |.++.+...-
T Consensus 38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~--Vtlv~~~~~~ 76 (156)
T d1djqa2 38 IGKRVVILNADTYFMAPSLAEKLATAGHE--VTIVSGVHLA 76 (156)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTTCE--EEEEESSCTT
T ss_pred cCCceEEEecCCChHHHHHHHHHHHcCCe--EEEEecCCcc
Confidence 456666664 6689999999999999988 8888886543
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.08 E-value=0.46 Score=32.68 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=30.2
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
-|+++|.||. -||.++|..|++.|.+ |.++.|...-
T Consensus 22 pk~vvIvGgG-~iG~E~A~~l~~~G~~--Vtlv~~~~~~ 57 (125)
T d3grsa2 22 PGRSVIVGAG-YIAVEMAGILSALGSK--TSLMIRHDKV 57 (125)
T ss_dssp CSEEEEECCS-HHHHHHHHHHHHTTCE--EEEECSSSSS
T ss_pred CCEEEEEcCC-ccHHHHHHHHhcCCcE--EEEEeecccc
Confidence 3788888875 5999999999999988 8888886644
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=85.07 E-value=0.5 Score=32.21 Aligned_cols=37 Identities=24% Similarity=0.083 Sum_probs=29.7
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
..++++|.|| |-||.++|..|++.|.+ |.++.+...-
T Consensus 21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~~--Vtiv~~~~~l 57 (119)
T d3lada2 21 VPGKLGVIGA-GVIGLELGSVWARLGAE--VTVLEAMDKF 57 (119)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCE--EEEEESSSSS
T ss_pred CCCeEEEECC-ChHHHHHHHHHHHcCCc--eEEEEeeccc
Confidence 3477888875 68999999999999998 7777776543
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=84.96 E-value=0.66 Score=31.42 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=30.0
Q ss_pred cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 27 KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 27 ~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
.+|+++|.|| |-+|.++|..|++.|.+ |.++.|.+..
T Consensus 21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~--vt~i~~~~~~ 57 (121)
T d1mo9a2 21 PGSTVVVVGG-SKTAVEYGCFFNATGRR--TVMLVRTEPL 57 (121)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSSCTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcchh--heEeeccchh
Confidence 4788887765 67899999999999988 8887776543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=84.87 E-value=1.5 Score=35.35 Aligned_cols=81 Identities=10% Similarity=0.080 Sum_probs=54.2
Q ss_pred cCcEEEEecCC-CchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC--CceeEEEeeCCChhHHHHHHHHHHH
Q 023441 27 KGGVSLVQGAS-RGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP--ERLDVLQLDLTVESTIEASAKSIKE 103 (282)
Q Consensus 27 ~gk~vlItGas-~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~--~~v~~~~~Dls~~~~~~~~~~~~~~ 103 (282)
.|++||=.|+. |+++.+ +++.|+. .|+.++.++...+.+.+.....+ .+++++..|+-+ .......
T Consensus 145 ~g~~VLDl~~g~G~~si~----~a~~ga~-~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~------~~~~~~~ 213 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIH----AAIAGAD-EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE------EMEKLQK 213 (324)
T ss_dssp TTCEEEETTCTTTHHHHH----HHHTTCS-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH------HHHHHHH
T ss_pred CCCeeecccCcccchhhh----hhhcCCc-EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhh------hhHHHHh
Confidence 48899988864 555543 4466774 69999999988776655554444 378888877642 2233333
Q ss_pred HcCCccEEEECcccC
Q 023441 104 KYGSLNLLINASGIL 118 (282)
Q Consensus 104 ~~~~id~lv~~ag~~ 118 (282)
...++|.+|.+.-..
T Consensus 214 ~~~~fD~Vi~DpP~~ 228 (324)
T d2as0a2 214 KGEKFDIVVLDPPAF 228 (324)
T ss_dssp TTCCEEEEEECCCCS
T ss_pred ccCCCCchhcCCccc
Confidence 335799999987654
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=84.81 E-value=0.56 Score=31.89 Aligned_cols=35 Identities=11% Similarity=-0.020 Sum_probs=28.6
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
|+++|.|| |-+|.++|..|++.|.+ |.++.|...-
T Consensus 23 ~~v~IiGg-G~iG~E~A~~l~~~g~~--Vtlv~~~~~i 57 (117)
T d1onfa2 23 KKIGIVGS-GYIAVELINVIKRLGID--SYIFARGNRI 57 (117)
T ss_dssp SEEEEECC-SHHHHHHHHHHHTTTCE--EEEECSSSSS
T ss_pred CEEEEECC-chHHHHHHHHHHhcccc--ceeeehhccc
Confidence 67777775 67899999999999988 8888876543
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=84.56 E-value=0.39 Score=35.97 Aligned_cols=31 Identities=10% Similarity=0.092 Sum_probs=26.9
Q ss_pred cEEEEecCCCchhHH-----HHHHHHhcCCCcEEEEee
Q 023441 29 GVSLVQGASRGIGLE-----FAKQLLEKNDKGCVIATC 61 (282)
Q Consensus 29 k~vlItGas~giG~a-----~a~~la~~G~~~~vi~~~ 61 (282)
|++.|||-.+|.|+- +|..|+++|.+ |.+++
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~r--Vl~id 37 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYR--TAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCC--EEEEC
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCe--EEEEC
Confidence 899999998899975 78999999998 77765
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=84.46 E-value=1.4 Score=31.69 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=27.1
Q ss_pred CcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecC
Q 023441 28 GGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRN 63 (282)
Q Consensus 28 gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~ 63 (282)
+++++|.|| |.+|.++|..|.+.|.++.|+...+.
T Consensus 3 ~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~~ 37 (185)
T d1q1ra1 3 NDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGDA 37 (185)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecCc
Confidence 567777665 67899999999999998666665554
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=84.33 E-value=0.77 Score=32.73 Aligned_cols=83 Identities=12% Similarity=0.026 Sum_probs=48.5
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccC------CCceeEEEeeCCChhHHHHHHHHHHHH
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRF------PERLDVLQLDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~------~~~v~~~~~Dls~~~~~~~~~~~~~~~ 104 (282)
+-+.|- |-+|..+|++|++.|. ++...|+.++..+..+..... -....++-..+.+.+++....+.+.+.
T Consensus 3 Ig~IGl-G~MG~~ma~~L~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~ 78 (156)
T d2cvza2 3 VAFIGL-GAMGYPMAGHLARRFP---TLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPY 78 (156)
T ss_dssp EEEECC-STTHHHHHHHHHTTSC---EEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTT
T ss_pred EEEEeH-HHHHHHHHHHHHhCCC---EEEEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhcccccc
Confidence 444554 8899999999998875 345667665543322211100 013344445566667777777777666
Q ss_pred cCCccEEEECccc
Q 023441 105 YGSLNLLINASGI 117 (282)
Q Consensus 105 ~~~id~lv~~ag~ 117 (282)
..+-.+++.++-.
T Consensus 79 ~~~~~~iid~sT~ 91 (156)
T d2cvza2 79 LREGTYWVDATSG 91 (156)
T ss_dssp CCTTEEEEECSCC
T ss_pred ccccccccccccC
Confidence 5555555555443
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=84.31 E-value=0.41 Score=36.82 Aligned_cols=79 Identities=18% Similarity=0.083 Sum_probs=53.9
Q ss_pred ccc-cCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHH
Q 023441 24 VKW-KGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIK 102 (282)
Q Consensus 24 ~~~-~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~ 102 (282)
.++ .|.+||-.|+++|--.++ |++.+.+ |+.+.++++..+.+.+.... ..++.++..|.....
T Consensus 66 L~l~~g~~VLdIG~GsGy~ta~---La~l~~~--V~aiE~~~~~~~~A~~~~~~-~~nv~~~~~d~~~g~---------- 129 (224)
T d1vbfa_ 66 LDLHKGQKVLEIGTGIGYYTAL---IAEIVDK--VVSVEINEKMYNYASKLLSY-YNNIKLILGDGTLGY---------- 129 (224)
T ss_dssp TTCCTTCEEEEECCTTSHHHHH---HHHHSSE--EEEEESCHHHHHHHHHHHTT-CSSEEEEESCGGGCC----------
T ss_pred hhhcccceEEEecCCCCHHHHH---HHHHhcc--cccccccHHHHHHHHHHHhc-ccccccccCchhhcc----------
Confidence 344 478999999998865544 4444555 99999888776655554443 258899999876421
Q ss_pred HHcCCccEEEECcccC
Q 023441 103 EKYGSLNLLINASGIL 118 (282)
Q Consensus 103 ~~~~~id~lv~~ag~~ 118 (282)
...++.|.++.+++..
T Consensus 130 ~~~~pfD~Iiv~~a~~ 145 (224)
T d1vbfa_ 130 EEEKPYDRVVVWATAP 145 (224)
T ss_dssp GGGCCEEEEEESSBBS
T ss_pred hhhhhHHHHHhhcchh
Confidence 1125799999888754
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=84.11 E-value=0.63 Score=34.97 Aligned_cols=41 Identities=24% Similarity=0.078 Sum_probs=34.1
Q ss_pred cccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 23 SVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 23 ~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
..++.||++.|.|. |.||+++|+.|..-|.+ |+..++....
T Consensus 40 ~~~l~~ktvgIiG~-G~IG~~va~~l~~fg~~--v~~~d~~~~~ 80 (199)
T d1dxya1 40 GKELGQQTVGVMGT-GHIGQVAIKLFKGFGAK--VIAYDPYPMK 80 (199)
T ss_dssp CCCGGGSEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSSCCS
T ss_pred cccccceeeeeeec-cccccccccccccccee--eeccCCccch
Confidence 46789999999885 67899999999999987 8888876543
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=84.07 E-value=0.13 Score=38.63 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=31.5
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGL 70 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~ 70 (282)
+++.|.||+. .|.++|..|++.|.+ |.+.+|+++..+.+
T Consensus 8 ~KI~ViGaG~-wGtAlA~~La~~g~~--V~l~~r~~~~~~~i 46 (189)
T d1n1ea2 8 NKAVVFGSGA-FGTALAMVLSKKCRE--VCVWHMNEEEVRLV 46 (189)
T ss_dssp EEEEEECCSH-HHHHHHHHHHTTEEE--EEEECSCHHHHHHH
T ss_pred ceEEEECCCH-HHHHHHHHHHHcCCe--EEEEEecHHHHHHH
Confidence 3688888754 799999999999977 99999988766543
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=83.92 E-value=0.5 Score=35.14 Aligned_cols=42 Identities=14% Similarity=0.015 Sum_probs=34.9
Q ss_pred ccccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 22 ASVKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 22 ~~~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
...++.|+++.|.| .|.||+++++.|..-|.+ |+..++....
T Consensus 38 ~~~~l~~~~vgiiG-~G~IG~~va~~l~~fg~~--v~~~d~~~~~ 79 (188)
T d2naca1 38 HAYDLEAMHVGTVA-AGRIGLAVLRRLAPFDVH--LHYTDRHRLP 79 (188)
T ss_dssp TCCCCTTCEEEEEC-CSHHHHHHHHHHGGGTCE--EEEECSSCCC
T ss_pred cceeccccceeecc-ccccchhhhhhhhccCce--EEEEeecccc
Confidence 35678999999988 578999999999999987 8888886543
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=83.26 E-value=0.3 Score=35.01 Aligned_cols=39 Identities=8% Similarity=0.067 Sum_probs=30.5
Q ss_pred EEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccccccc
Q 023441 31 SLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLD 72 (282)
Q Consensus 31 vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~ 72 (282)
+.|. |.|-+|.++++.|.+.|.+ +++.+|+.++.+++.+
T Consensus 3 Ig~I-G~G~mG~al~~~l~~~~~~--i~v~~r~~~~~~~l~~ 41 (152)
T d2ahra2 3 IGII-GVGKMASAIIKGLKQTPHE--LIISGSSLERSKEIAE 41 (152)
T ss_dssp EEEE-CCSHHHHHHHHHHTTSSCE--EEEECSSHHHHHHHHH
T ss_pred EEEE-eccHHHHHHHHHHHhCCCe--EEEEcChHHhHHhhcc
Confidence 3444 6788999999999999987 8999998877655443
|
| >d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.06 E-value=0.94 Score=36.31 Aligned_cols=87 Identities=13% Similarity=-0.009 Sum_probs=49.0
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChh----------------
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVES---------------- 92 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~---------------- 92 (282)
...+|+..+|--|.++|..-+..|.++ +++...+.... ..+.++.+|.++..+.-+..+..
T Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~-~i~~p~~~~~~--k~~~l~~~Ga~vi~~~~~~~~~~~~a~~~a~~~g~~~~~ 145 (318)
T d1v71a1 69 KAGVLTFSSGNHAQAIALSAKILGIPA-KIIMPLDAPEA--KVAATKGYGGQVIMYDRYKDDREKMAKEISEREGLTIIP 145 (318)
T ss_dssp HHCEEECCSSHHHHHHHHHHHHTTCCE-EEEEETTCCHH--HHHHHHHTTCEEEEECTTTTCHHHHHHHHHHHHTCBCCC
T ss_pred cceeeeeccchhhHHHHHhhcccccce-eecccccccHH--HHHHHHHcCCcEEeccCCchHHHHHHHHHHHhcCCEecC
Confidence 345788888889999999999999883 33333333221 22333444555444332222221
Q ss_pred ---------HHHHHHHHHHHHcCCccEEEECcccC
Q 023441 93 ---------TIEASAKSIKEKYGSLNLLINASGIL 118 (282)
Q Consensus 93 ---------~~~~~~~~~~~~~~~id~lv~~ag~~ 118 (282)
....+..++.++++.+|.+|.+.|..
T Consensus 146 ~~~~~~~~~g~~t~~~Ei~~q~~~~d~vvv~~G~G 180 (318)
T d1v71a1 146 PYDHPHVLAGQGTAAKELFEEVGPLDALFVCLGGG 180 (318)
T ss_dssp SSSSHHHHHHHTHHHHHHHHHHCCCSEEEEECSSS
T ss_pred CccccccccccchHHHHHHHhcCCCCEEEEcCCch
Confidence 12333455556666777777777654
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=83.04 E-value=1.8 Score=29.44 Aligned_cols=78 Identities=17% Similarity=0.086 Sum_probs=51.6
Q ss_pred cCcEEEEecCCC-ch---------hHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHH
Q 023441 27 KGGVSLVQGASR-GI---------GLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEA 96 (282)
Q Consensus 27 ~gk~vlItGas~-gi---------G~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~ 96 (282)
..|.+||.|+.. -| +...++.|.++|++ ++++..|++....-.+. .+++.|.+. ..+.+.+
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~--~IliN~NPeTVstd~d~----aD~lYfepl---t~e~v~~ 73 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYE--TIMVNCNPETVSTDYDT----SDRLYFEPV---TLEDVLE 73 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCE--EEEECCCTTSSTTSTTS----SSEEECCCC---SHHHHHH
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCe--EEEEecChhhhhcChhh----cCceEEccC---CHHHHHH
Confidence 357899999742 33 34678899999988 99999998876532222 234444333 3555666
Q ss_pred HHHHHHHHcCCccEEEECcccC
Q 023441 97 SAKSIKEKYGSLNLLINASGIL 118 (282)
Q Consensus 97 ~~~~~~~~~~~id~lv~~ag~~ 118 (282)
+++.- ++|.++...|..
T Consensus 74 Ii~~E-----~p~~ii~~~GGQ 90 (121)
T d1a9xa4 74 IVRIE-----KPKGVIVQYGGQ 90 (121)
T ss_dssp HHHHH-----CCSEEECSSSTH
T ss_pred HHHHh-----CCCEEEeehhhh
Confidence 66542 789998888754
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=82.91 E-value=0.57 Score=31.59 Aligned_cols=35 Identities=20% Similarity=0.109 Sum_probs=27.9
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCc
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNG 66 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~ 66 (282)
|+++|.| +|-+|.++|..|++.|.+ |.++.|.+.-
T Consensus 22 ~~vvIiG-gG~~G~E~A~~l~~~g~~--Vtlve~~~~i 56 (115)
T d1lvla2 22 QHLVVVG-GGYIGLELGIAYRKLGAQ--VSVVEARERI 56 (115)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHHTCE--EEEECSSSSS
T ss_pred CeEEEEC-CCHHHHHHHHHHhhcccc--eEEEeeeccc
Confidence 6777665 578999999999999988 8887776543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=82.86 E-value=1.2 Score=32.27 Aligned_cols=78 Identities=24% Similarity=0.207 Sum_probs=54.0
Q ss_pred ccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 26 WKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 26 ~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
.+-.+++|.|+. --|+.-++-..+.|++ |.+.+.+.+.++.+..... ..+. .-.++.+.+.+.+.
T Consensus 30 v~pa~V~ViGaG-vaG~~A~~~A~~lGA~--V~~~D~~~~~l~~l~~~~~---~~~~---~~~~~~~~l~~~~~------ 94 (168)
T d1pjca1 30 VKPGKVVILGGG-VVGTEAAKMAVGLGAQ--VQIFDINVERLSYLETLFG---SRVE---LLYSNSAEIETAVA------ 94 (168)
T ss_dssp BCCCEEEEECCS-HHHHHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHG---GGSE---EEECCHHHHHHHHH------
T ss_pred CCCcEEEEECCC-hHHHHHHHHHhhCCCE--EEEEeCcHHHHHHHHHhhc---ccce---eehhhhhhHHHhhc------
Confidence 345688888874 4577878888889988 9999999888766554432 2333 23455666655554
Q ss_pred CCccEEEECcccCC
Q 023441 106 GSLNLLINASGILS 119 (282)
Q Consensus 106 ~~id~lv~~ag~~~ 119 (282)
.-|++|.++-+..
T Consensus 95 -~aDivI~aalipG 107 (168)
T d1pjca1 95 -EADLLIGAVLVPG 107 (168)
T ss_dssp -TCSEEEECCCCTT
T ss_pred -cCcEEEEeeecCC
Confidence 5799999998754
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=82.85 E-value=0.69 Score=35.62 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=34.0
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT 68 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~ 68 (282)
.+++||+++|-|- |.+|..+|+.|.+.|++ |+..+.+.....
T Consensus 35 ~~l~g~~v~IqG~-GnVG~~~a~~L~~~Gak--vv~~d~~~~~~~ 76 (230)
T d1leha1 35 DSLEGLAVSVQGL-GNVAKALCKKLNTEGAK--LVVTDVNKAAVS 76 (230)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCE--EEEECSCHHHHH
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHCCCE--EEeecccHHHHH
Confidence 4689999999874 66799999999999998 887776654443
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=82.50 E-value=2.8 Score=30.56 Aligned_cols=75 Identities=16% Similarity=0.104 Sum_probs=44.4
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHHHHHHHHHHcCCcc
Q 023441 30 VSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEASAKSIKEKYGSLN 109 (282)
Q Consensus 30 ~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~~~~~~~id 109 (282)
+|.|.||||-.|.++++.|+++-. +.+..+..+....+.+.+.....-.. ......+.+.+ .+ .+|
T Consensus 3 kVaIvGATGyvG~eLirlL~~HP~-~ei~~l~s~~~aG~~i~~~~p~~~~~---~~~~~~~~~~~---~~-------~~d 68 (176)
T d1vkna1 3 RAGIIGATGYTGLELVRLLKNHPE-AKITYLSSRTYAGKKLEEIFPSTLEN---SILSEFDPEKV---SK-------NCD 68 (176)
T ss_dssp EEEEESTTSHHHHHHHHHHHHCTT-EEEEEEECSTTTTSBHHHHCGGGCCC---CBCBCCCHHHH---HH-------HCS
T ss_pred EEEEECCCcHHHHHHHHHHHhCCC-ceEEEeeccccCCCcccccCchhhcc---ccccccCHhHh---cc-------ccc
Confidence 688999999999999999998753 45665554444333333322211111 11223343332 11 489
Q ss_pred EEEECcccC
Q 023441 110 LLINASGIL 118 (282)
Q Consensus 110 ~lv~~ag~~ 118 (282)
+++.+.+..
T Consensus 69 vvf~a~p~~ 77 (176)
T d1vkna1 69 VLFTALPAG 77 (176)
T ss_dssp EEEECCSTT
T ss_pred eEEEccccH
Confidence 999888764
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.47 E-value=0.7 Score=34.90 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=28.7
Q ss_pred cEEEEecCCCchhHH-----HHHHHHhcCCCcEEEEeecCCC
Q 023441 29 GVSLVQGASRGIGLE-----FAKQLLEKNDKGCVIATCRNPN 65 (282)
Q Consensus 29 k~vlItGas~giG~a-----~a~~la~~G~~~~vi~~~r~~~ 65 (282)
|++.|+++-||.|+. +|..|+++|.+ |.+++-+..
T Consensus 2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~--VlliD~D~~ 41 (232)
T d1hyqa_ 2 RTITVASGKGGTGKTTITANLGVALAQLGHD--VTIVDADIT 41 (232)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCC--EEEEECCCS
T ss_pred EEEEEECCCCCChHHHHHHHHHHHHHhCCCC--EEEEeCCCC
Confidence 789999999998876 57788889988 888876654
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.30 E-value=0.7 Score=36.91 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=30.3
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEee
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATC 61 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~ 61 (282)
.+++||+++|-|- |-+|..+|+.|.+.|++ |+.++
T Consensus 32 ~~L~gktvaIqGf-GnVG~~~A~~L~e~Gak--vv~vs 66 (293)
T d1hwxa1 32 PGFGDKTFAVQGF-GNVGLHSMRYLHRFGAK--CVAVG 66 (293)
T ss_dssp SSSTTCEEEEECC-SHHHHHHHHHHHHTTCE--EEEEE
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHCCCE--EEEEE
Confidence 4789999999987 68999999999999998 66554
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=82.23 E-value=0.81 Score=36.16 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=50.4
Q ss_pred cEEEEecCCCc-hhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCC--CceeEEEeeCCChhHHHHHHHHHHHHc
Q 023441 29 GVSLVQGASRG-IGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFP--ERLDVLQLDLTVESTIEASAKSIKEKY 105 (282)
Q Consensus 29 k~vlItGas~g-iG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~--~~v~~~~~Dls~~~~~~~~~~~~~~~~ 105 (282)
++++-.|+++| |+.+++ +. ..++ |++++.+++..+-+.+.....+ .++.+...|+.+.. .+.+
T Consensus 112 ~~vld~g~GsG~i~~~la-~~--~~~~--v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~---------~~~~ 177 (271)
T d1nv8a_ 112 KTVADIGTGSGAIGVSVA-KF--SDAI--VFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF---------KEKF 177 (271)
T ss_dssp CEEEEESCTTSHHHHHHH-HH--SSCE--EEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG---------GGGT
T ss_pred cEEEEeeeeeehhhhhhh-hc--ccce--eeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccc---------cccc
Confidence 46665666555 554444 32 3444 9999998887766555544443 36778888887542 2234
Q ss_pred CCccEEEECcccCC
Q 023441 106 GSLNLLINASGILS 119 (282)
Q Consensus 106 ~~id~lv~~ag~~~ 119 (282)
+++|++|.|.-...
T Consensus 178 ~~fDlIVsNPPYI~ 191 (271)
T d1nv8a_ 178 ASIEMILSNPPYVK 191 (271)
T ss_dssp TTCCEEEECCCCBC
T ss_pred CcccEEEEcccccC
Confidence 68999999998764
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=82.15 E-value=0.69 Score=34.11 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=33.7
Q ss_pred ccccCcEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCccc
Q 023441 24 VKWKGGVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGAT 68 (282)
Q Consensus 24 ~~~~gk~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~ 68 (282)
...++|+++|.|| |.-|.+.|..|+++|.+ |++..++.....
T Consensus 39 ~~~~~k~V~IIGa-GPAGL~AA~~la~~G~~--Vtl~E~~~~~GG 80 (179)
T d1ps9a3 39 PAVQKKNLAVVGA-GPAGLAFAINAAARGHQ--VTLFDAHSEIGG 80 (179)
T ss_dssp SCSSCCEEEEECC-SHHHHHHHHHHHTTTCE--EEEEESSSSSCT
T ss_pred CCCCCcEEEEECc-cHHHHHHHHHHHhhccc--eEEEeccCccCc
Confidence 3356799999987 45689999999999988 999888776543
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=82.00 E-value=4 Score=27.96 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=53.1
Q ss_pred cCcEEEEecCCC-ch---------hHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCChhHHHH
Q 023441 27 KGGVSLVQGASR-GI---------GLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVESTIEA 96 (282)
Q Consensus 27 ~gk~vlItGas~-gi---------G~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~~~~~~ 96 (282)
.-|.+||.|+.. -| +...++.|.++|++ ++++..|++....-.+. .+++.|.+. ..+.+.+
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~--~iliN~NP~TVstd~d~----aD~lYfePl---t~e~v~~ 76 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYR--VINVNSNPATIMTDPEM----ADATYIEPI---HWEVVRK 76 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCE--EEEECSCTTCGGGCGGG----SSEEECSCC---CHHHHHH
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCe--EEEecCchHhhhcChhh----cceeeeecC---CHHHHHH
Confidence 448899999742 34 35578899999998 99999998876533332 234443333 3566766
Q ss_pred HHHHHHHHcCCccEEEECcccC
Q 023441 97 SAKSIKEKYGSLNLLINASGIL 118 (282)
Q Consensus 97 ~~~~~~~~~~~id~lv~~ag~~ 118 (282)
+++.- ++|.++...|..
T Consensus 77 Ii~~E-----~pd~il~~~GGQ 93 (127)
T d1a9xa3 77 IIEKE-----RPDAVLPTMGGQ 93 (127)
T ss_dssp HHHHH-----CCSEEECSSSHH
T ss_pred HHHHh-----CcCCeEEEeeee
Confidence 66652 799999888864
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=81.92 E-value=2.3 Score=31.25 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=49.5
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCCcEEEEeecCCCcccccccccccCCCceeEEEeeCCCh---------------hH
Q 023441 29 GVSLVQGASRGIGLEFAKQLLEKNDKGCVIATCRNPNGATGLLDLKNRFPERLDVLQLDLTVE---------------ST 93 (282)
Q Consensus 29 k~vlItGas~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~~~~~~~~~~~~v~~~~~Dls~~---------------~~ 93 (282)
-+++|.||. -.|..-++-..+.|+. |.+.+.+...++.+..+..+ ++..+..+. +.
T Consensus 30 a~VvViGaG-vaG~~Aa~~A~~lGA~--V~v~D~~~~~~~~l~~l~~~------~i~~~~~~~~~~~~~~gyA~~~s~~~ 100 (183)
T d1l7da1 30 ARVLVFGVG-VAGLQAIATAKRLGAV--VMATDVRAATKEQVESLGGK------FITVDDEAMKTAETAGGYAKEMGEEF 100 (183)
T ss_dssp CEEEEECCS-HHHHHHHHHHHHTTCE--EEEECSCSTTHHHHHHTTCE------ECCC----------------------
T ss_pred cEEEEEcCc-HHHHHHHHHHHHcCCE--EEEEeccHHHHHHHHHhhcc------eEEEeccccccccccccchhhcCHHH
Confidence 478888764 4577878888888988 99999999887766554321 111111111 11
Q ss_pred HHHHHHHHHHHcCCccEEEECcccCC
Q 023441 94 IEASAKSIKEKYGSLNLLINASGILS 119 (282)
Q Consensus 94 ~~~~~~~~~~~~~~id~lv~~ag~~~ 119 (282)
.++.-+.+.+...+-|++|..+-+..
T Consensus 101 ~~~~~~~l~~~l~~aDlVI~talipG 126 (183)
T d1l7da1 101 RKKQAEAVLKELVKTDIAITTALIPG 126 (183)
T ss_dssp -CCHHHHHHHHHTTCSEEEECCCCTT
T ss_pred HHHHHHHHHHHHHhhhhheeeeecCC
Confidence 11222333444467999999997764
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=80.68 E-value=6.5 Score=26.76 Aligned_cols=88 Identities=22% Similarity=0.279 Sum_probs=56.3
Q ss_pred cCcEEEEecCC---CchhHHHHHHHHhcCCCcEEEEeecCCCcccc--cccccccCCCceeEEEeeCCChhHHHHHHHHH
Q 023441 27 KGGVSLVQGAS---RGIGLEFAKQLLEKNDKGCVIATCRNPNGATG--LLDLKNRFPERLDVLQLDLTVESTIEASAKSI 101 (282)
Q Consensus 27 ~gk~vlItGas---~giG~a~a~~la~~G~~~~vi~~~r~~~~~~~--~~~~~~~~~~~v~~~~~Dls~~~~~~~~~~~~ 101 (282)
+=|++.|.|+| +..|..+.+.|.+.| ...|+.+..+.++... ....+.+.+..+..... ....+.+.++++++
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi-~vp~~~~~~~~~~~ 84 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAII-VVPKRFVKDTLIQC 84 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEE-CSCHHHHHHHHHHH
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCccccCCeEeecchhhcCCCCceEEE-ecChHHhHHHHHHH
Confidence 44899999998 789999999887655 4458888776554432 33344444444333222 23467788888888
Q ss_pred HHHcCCcc-EEEECcccC
Q 023441 102 KEKYGSLN-LLINASGIL 118 (282)
Q Consensus 102 ~~~~~~id-~lv~~ag~~ 118 (282)
.+. .+. +++..+|+.
T Consensus 85 ~~~--g~~~~vi~s~Gf~ 100 (129)
T d2csua1 85 GEK--GVKGVVIITAGFG 100 (129)
T ss_dssp HHH--TCCEEEECCCSST
T ss_pred HHc--CCCEEEEeccccc
Confidence 776 345 455555654
|
| >d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose 6-phosphate dehydrogenase, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.22 E-value=2.6 Score=31.51 Aligned_cols=78 Identities=9% Similarity=0.109 Sum_probs=52.2
Q ss_pred cCcEEEEecCCCchhHH-HHH---HHHhcC---CCcEEEEeecCCCcccccccc----cc----------cCCCceeEEE
Q 023441 27 KGGVSLVQGASRGIGLE-FAK---QLLEKN---DKGCVIATCRNPNGATGLLDL----KN----------RFPERLDVLQ 85 (282)
Q Consensus 27 ~gk~vlItGas~giG~a-~a~---~la~~G---~~~~vi~~~r~~~~~~~~~~~----~~----------~~~~~v~~~~ 85 (282)
..-+++|.||||-+.+- +.- +|.+.| .+..|+.++|.+-..+...+. .. ++-.++.|+.
T Consensus 19 ~~~t~VIFGatGDLA~RKL~PALf~L~~~g~Lp~~~~Iig~aR~~~s~e~fr~~~~~~~~~~~~~~~~~~~f~~~~~Y~~ 98 (203)
T d1qkia1 19 DTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVA 98 (203)
T ss_dssp CCEEEEEETTTSHHHHHTHHHHHHHHHHTTCSCSSEEEEEEBSSCCSCHHHHHHHSCCTTCCGGGHHHHHHHHTTEECCB
T ss_pred CCcEEEEECcccHHHHhHHHHHHHHHHHcCCCCCCcEEEEEECCCCCHHHHHHHHHHHHhhchhhHHHHHHHHHhhcccc
Confidence 34579999999998876 322 344554 245699999987554322111 11 1124889999
Q ss_pred eeCCChhHHHHHHHHHHHH
Q 023441 86 LDLTVESTIEASAKSIKEK 104 (282)
Q Consensus 86 ~Dls~~~~~~~~~~~~~~~ 104 (282)
+|++|+++..++-+.+.+.
T Consensus 99 ~d~~~~~~~~~L~~~l~~~ 117 (203)
T d1qkia1 99 GQYDDAASYQRLNSHMNAL 117 (203)
T ss_dssp CCTTCHHHHHHHHHHHHHT
T ss_pred CcCCChhhHHHHHHHHHHH
Confidence 9999999999887766553
|