Your job contains 1 sequence.
>023442
MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL
CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG
GINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY
GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI
PDSVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVLYAY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023442
(282 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2087408 - symbol:AT3G63510 species:3702 "Arabi... 1157 1.8e-117 1
TAIR|locus:2152758 - symbol:AT5G47970 species:3702 "Arabi... 1064 1.3e-107 1
UNIPROTKB|Q9KUX9 - symbol:dusA "tRNA-dihydrouridine synth... 385 1.2e-35 1
TIGR_CMR|VC_0379 - symbol:VC_0379 "TIM-barrel protein, yj... 385 1.2e-35 1
UNIPROTKB|P32695 - symbol:dusA "tRNA-dihydrouridine synth... 378 6.5e-35 1
GENEDB_PFALCIPARUM|PFI0920c - symbol:PFI0920c "Dihydrouri... 308 9.8e-35 2
UNIPROTKB|Q8I2W5 - symbol:PFI0920c "Dihydrouridine syntha... 308 9.8e-35 2
UNIPROTKB|Q48A03 - symbol:CPS_0353 "tRNA-dihydrouridine s... 372 2.8e-34 1
TIGR_CMR|CPS_0353 - symbol:CPS_0353 "TIM-barrel protein, ... 372 2.8e-34 1
UNIPROTKB|Q607T6 - symbol:MCA1669 "tRNA-dihydrouridine sy... 371 3.6e-34 1
UNIPROTKB|Q8EAJ0 - symbol:dusA "tRNA-dihydrouridine synth... 369 5.8e-34 1
TIGR_CMR|SO_3912 - symbol:SO_3912 "TIM-barrel protein, yj... 369 5.8e-34 1
UNIPROTKB|Q83D40 - symbol:CBU_0904 "tRNA-dihydrouridine s... 352 3.7e-32 1
TIGR_CMR|CBU_0904 - symbol:CBU_0904 "TIM-barrel protein, ... 352 3.7e-32 1
UNIPROTKB|Q884G7 - symbol:dusA "tRNA-dihydrouridine synth... 341 5.4e-31 1
TIGR_CMR|SPO_2374 - symbol:SPO_2374 "tRNA-dihydrouridine ... 337 1.4e-30 1
UNIPROTKB|Q0C5H0 - symbol:dusA "tRNA-dihydrouridine synth... 328 1.3e-29 1
UNIPROTKB|O53835 - symbol:dus "Probable tRNA-dihydrouridi... 161 2.1e-09 1
UNIPROTKB|Q87VS1 - symbol:dusB "tRNA-dihydrouridine synth... 147 6.6e-08 1
TIGR_CMR|SPO_2089 - symbol:SPO_2089 "tRNA-dihydrouridine ... 145 1.1e-07 1
UNIPROTKB|Q607L4 - symbol:MCA1745 "tRNA-dihydrouridine sy... 137 9.1e-07 1
TIGR_CMR|APH_0575 - symbol:APH_0575 "putative tRNA-dihydr... 132 3.2e-06 1
UNIPROTKB|Q81ZD5 - symbol:BAS0319 "tRNA-dihydrouridine sy... 122 4.9e-05 1
TIGR_CMR|BA_0334 - symbol:BA_0334 "conserved hypothetical... 122 4.9e-05 1
UNIPROTKB|Q3A9L8 - symbol:CHY_2369 "tRNA-dihydrouridine s... 118 0.00014 1
TIGR_CMR|CHY_2369 - symbol:CHY_2369 "putative TIM-barrel ... 118 0.00014 1
TIGR_CMR|GSU_1005 - symbol:GSU_1005 "dihydrouridine synth... 117 0.00018 1
DICTYBASE|DDB_G0277081 - symbol:DDB_G0277081 "tRNA-dihydr... 116 0.00033 1
UNIPROTKB|Q8EJR8 - symbol:dusB "tRNA-dihydrouridine synth... 114 0.00039 1
TIGR_CMR|SO_0394 - symbol:SO_0394 "conserved hypothetical... 114 0.00039 1
UNIPROTKB|Q81VW4 - symbol:BA_0075 "tRNA-dihydrouridine sy... 86 0.00083 2
TIGR_CMR|BA_0075 - symbol:BA_0075 "TIM-barrel protein, pu... 86 0.00083 2
>TAIR|locus:2087408 [details] [associations]
symbol:AT3G63510 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016556 "mRNA modification" evidence=RCA]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
EMBL:CP002686 GenomeReviews:BA000014_GR Gene3D:3.20.20.70
GO:GO:0050660 UniGene:At.43820 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 EMBL:BT000879
IPI:IPI00546722 RefSeq:NP_567149.2 ProteinModelPortal:Q8H128
SMR:Q8H128 EnsemblPlants:AT3G63510.1 GeneID:825526
KEGG:ath:AT3G63510 TAIR:At3g63510 InParanoid:Q8H128 OMA:SPTRHFI
PhylomeDB:Q8H128 ProtClustDB:CLSN2686569 ArrayExpress:Q8H128
Genevestigator:Q8H128 Uniprot:Q8H128
Length = 419
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 211/280 (75%), Positives = 250/280 (89%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKVAGHGCFGVSLML PK VGEAMS IAANTNVPV+VKCRIGVD+HDSY++LCD
Sbjct: 140 NCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSAIAANTNVPVTVKCRIGVDNHDSYDELCD 199
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIYKVS+LSPTRHFI+HSRKALL GISPA+NR IPPLKYEYYYAL+RDFPDL FT+NGGI
Sbjct: 200 FIYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGI 259
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+V +VNAAL++GAH VMVGRAAY NPW TLG VDTA+YG PSSGLTRRQV+E+YQ+YGD
Sbjct: 260 TSVSKVNAALKEGAHGVMVGRAAYNNPWQTLGQVDTAVYGVPSSGLTRRQVLEQYQVYGD 319
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++LGT+GN RP+VRD++KPLL+ FHSE GN L+KR+ADAAF+ C++V S LEE++ AIPD
Sbjct: 320 SVLGTHGNGRPNVRDLVKPLLNLFHSENGNSLWKRRADAAFKECRSVGSLLEESLRAIPD 379
Query: 243 SVLDSPIEEAPR-GREDLFADVHDLLPPPYKAREQEVLYA 281
VLDSPI +P G ED+FADVH++LPPPY+A E+ +L A
Sbjct: 380 CVLDSPISGSPESGDEDVFADVHNVLPPPYEAGEEIILCA 419
>TAIR|locus:2152758 [details] [associations]
symbol:AT5G47970 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009524 "phragmoplast" evidence=IDA]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0009524 EMBL:AB017064
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000259834 KO:K05539 EMBL:AB024025
ProtClustDB:CLSN2686569 EMBL:AY072094 EMBL:AY096579 IPI:IPI00520234
RefSeq:NP_001078731.1 RefSeq:NP_199608.1 UniGene:At.66758
ProteinModelPortal:Q9FI41 SMR:Q9FI41 EnsemblPlants:AT5G47970.1
EnsemblPlants:AT5G47970.2 GeneID:834848 KEGG:ath:AT5G47970
TAIR:At5g47970 InParanoid:Q9FI41 OMA:KATRLAN PhylomeDB:Q9FI41
ArrayExpress:Q9FI41 Genevestigator:Q9FI41 Uniprot:Q9FI41
Length = 387
Score = 1064 (379.6 bits), Expect = 1.3e-107, P = 1.3e-107
Identities = 191/277 (68%), Positives = 234/277 (84%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKV+G GCFG LMLDPKFVGEAMSVIAANTN V+VKCRIGVDDHDSYN+LCD
Sbjct: 98 NCGCPSPKVSGRGCFGALLMLDPKFVGEAMSVIAANTNAAVTVKCRIGVDDHDSYNELCD 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI+ VSSLSPT+HFIIHSRKALL+G+SP++NR IPPLKYE+++ALLRDFPDL FT+NGGI
Sbjct: 158 FIHIVSSLSPTKHFIIHSRKALLSGLSPSDNRRIPPLKYEFFFALLRDFPDLKFTINGGI 217
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
N+V E +AALR GAH VM+GRA Y NPW+ LGHVDT +YG+PSSG+TRRQV+EKY++YG+
Sbjct: 218 NSVVEADAALRSGAHGVMLGRAVYYNPWHILGHVDTVVYGSPSSGITRRQVLEKYKLYGE 277
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++LG YG RP++RD+++PL++ FHSE GNG +KR+ DAA C T++SFL+E + AIPD
Sbjct: 278 SVLGKYGKGRPNLRDIVRPLINLFHSESGNGQWKRRTDAALLHCTTLQSFLDEVLPAIPD 337
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
VLDS + GREDLFADV LLPPPY+ + L
Sbjct: 338 YVLDSSAVKEATGREDLFADVQRLLPPPYEKESFKAL 374
>UNIPROTKB|Q9KUX9 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
Uniprot:Q9KUX9
Length = 327
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 90/237 (37%), Positives = 128/237 (54%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L FI
Sbjct: 92 GCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQFI 150
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+ +
Sbjct: 151 ATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGVKS 210
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 211 LEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIERE 268
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + G H+ + + +L F + PG ++R +E+ + IP
Sbjct: 269 L-SQGT---HLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 321
>TIGR_CMR|VC_0379 [details] [associations]
symbol:VC_0379 "TIM-barrel protein, yjbN family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
Uniprot:Q9KUX9
Length = 327
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 90/237 (37%), Positives = 128/237 (54%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L FI
Sbjct: 92 GCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQFI 150
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+ +
Sbjct: 151 ATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGVKS 210
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 211 LEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIERE 268
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + G H+ + + +L F + PG ++R +E+ + IP
Sbjct: 269 L-SQGT---HLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 321
>UNIPROTKB|P32695 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U00006 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 RefSeq:NP_418473.2 RefSeq:YP_492192.1
ProteinModelPortal:P32695 SMR:P32695 PRIDE:P32695
EnsemblBacteria:EBESCT00000004365 EnsemblBacteria:EBESCT00000018223
GeneID:12930614 GeneID:948558 KEGG:ecj:Y75_p3936 KEGG:eco:b4049
PATRIC:32123637 EchoBASE:EB1876 EcoGene:EG11932
HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815
BioCyc:EcoCyc:EG11932-MONOMER BioCyc:ECOL316407:JW5950-MONOMER
BioCyc:MetaCyc:EG11932-MONOMER Genevestigator:P32695
TIGRFAMs:TIGR00742 Uniprot:P32695
Length = 330
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 90/213 (42%), Positives = 120/213 (56%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCDFI
Sbjct: 98 GCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFI 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI +
Sbjct: 157 NTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKS 216
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 217 LEEAKAHLQH-MDGVMVGREAYQNPGI-LAAVDREIFGSSDTDADPVAVVRAMYPYIERE 274
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + G H+ + +L F PG ++R
Sbjct: 275 L-SQGTYLGHIT---RHMLGLFQGIPGARQWRR 303
>GENEDB_PFALCIPARUM|PFI0920c [details] [associations]
symbol:PFI0920c "Dihydrouridine synthase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001352059.1
ProteinModelPortal:Q8I2W5 EnsemblProtists:PFI0920c:mRNA
GeneID:813464 KEGG:pfa:PFI0920c EuPathDB:PlasmoDB:PF3D7_0918800
HOGENOM:HOG000282922 ProtClustDB:CLSZ2432702 Uniprot:Q8I2W5
Length = 577
Score = 308 (113.5 bits), Expect = 9.8e-35, Sum P(2) = 9.8e-35
Identities = 64/128 (50%), Positives = 82/128 (64%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS KVA G FG SLM +P+ V + I +PV+VK R GVD++DS++ L FI
Sbjct: 288 GCPSTKVANKGAFGASLMKNPEQVRNIVYEIKKKVQIPVTVKIRTGVDNYDSFDFLKTFI 347
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VSS+ HFI+H+RKA L G+ P +NR IPPL+Y Y L + +P L FTLNGGI T
Sbjct: 348 ETVSSVG-CNHFIVHARKAWLKGLDPKQNRKIPPLEYYKVYDLCKLYPHLKFTLNGGIQT 406
Query: 125 VDEVNAAL 132
+ E A L
Sbjct: 407 IQEAIALL 414
Score = 97 (39.2 bits), Expect = 9.8e-35, Sum P(2) = 9.8e-35
Identities = 32/121 (26%), Positives = 54/121 (44%)
Query: 139 VMVGRAAYQNPWYTLGHVDTAIYGA--PSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVR 196
+M+GRA +N L D +Y PS+ +RR ++E Y+ Y + Y N
Sbjct: 449 IMIGRACMENIT-VLSQTDKLVYNQDIPSTAYSRRTILEAYKKYLEKNSLFY--NLSSSF 505
Query: 197 DVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTV---KSFLEETIVA---IPDSVLDSPIE 250
+++KP+L PG+ +F+ K D + + LE+ I I LD P+
Sbjct: 506 ELLKPVLGILKGMPGHRIFRNKLDTYIRNYTSTLPCSEILEKAIADVDHIAPGCLDLPLH 565
Query: 251 E 251
+
Sbjct: 566 D 566
>UNIPROTKB|Q8I2W5 [details] [associations]
symbol:PFI0920c "Dihydrouridine synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001352059.1
ProteinModelPortal:Q8I2W5 EnsemblProtists:PFI0920c:mRNA
GeneID:813464 KEGG:pfa:PFI0920c EuPathDB:PlasmoDB:PF3D7_0918800
HOGENOM:HOG000282922 ProtClustDB:CLSZ2432702 Uniprot:Q8I2W5
Length = 577
Score = 308 (113.5 bits), Expect = 9.8e-35, Sum P(2) = 9.8e-35
Identities = 64/128 (50%), Positives = 82/128 (64%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS KVA G FG SLM +P+ V + I +PV+VK R GVD++DS++ L FI
Sbjct: 288 GCPSTKVANKGAFGASLMKNPEQVRNIVYEIKKKVQIPVTVKIRTGVDNYDSFDFLKTFI 347
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VSS+ HFI+H+RKA L G+ P +NR IPPL+Y Y L + +P L FTLNGGI T
Sbjct: 348 ETVSSVG-CNHFIVHARKAWLKGLDPKQNRKIPPLEYYKVYDLCKLYPHLKFTLNGGIQT 406
Query: 125 VDEVNAAL 132
+ E A L
Sbjct: 407 IQEAIALL 414
Score = 97 (39.2 bits), Expect = 9.8e-35, Sum P(2) = 9.8e-35
Identities = 32/121 (26%), Positives = 54/121 (44%)
Query: 139 VMVGRAAYQNPWYTLGHVDTAIYGA--PSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVR 196
+M+GRA +N L D +Y PS+ +RR ++E Y+ Y + Y N
Sbjct: 449 IMIGRACMENIT-VLSQTDKLVYNQDIPSTAYSRRTILEAYKKYLEKNSLFY--NLSSSF 505
Query: 197 DVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTV---KSFLEETIVA---IPDSVLDSPIE 250
+++KP+L PG+ +F+ K D + + LE+ I I LD P+
Sbjct: 506 ELLKPVLGILKGMPGHRIFRNKLDTYIRNYTSTLPCSEILEKAIADVDHIAPGCLDLPLH 565
Query: 251 E 251
+
Sbjct: 566 D 566
>UNIPROTKB|Q48A03 [details] [associations]
symbol:CPS_0353 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
Length = 335
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 82/191 (42%), Positives = 113/191 (59%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P V + ++ + + TN+PV+VK RIG+DD DSY L FI
Sbjct: 105 GCPSDRVQ-NGRFGACLMAEPALVAQCVNQMQSATNIPVTVKSRIGIDDLDSYEFLHTFI 163
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+VS + RHFIIH+RKA L G+SP +NR +PPL Y+ Y + DF DL ++NGGI T
Sbjct: 164 EEVSK-ADCRHFIIHARKAWLTGLSPKQNRDVPPLDYDRVYQIKNDFKDLEVSINGGIKT 222
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
E N L+ VM+GR Y +P Y L D IY + + L+R +V++ Y D
Sbjct: 223 FSEANEHLQH-IDGVMIGREIYNSP-YMLADADNEIYQSDTIKLSRSEVIDLMVPYIDET 280
Query: 185 LGTYGNNRPHV 195
+ G HV
Sbjct: 281 IAN-GGRAWHV 290
>TIGR_CMR|CPS_0353 [details] [associations]
symbol:CPS_0353 "TIM-barrel protein, yjbN family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
Length = 335
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 82/191 (42%), Positives = 113/191 (59%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P V + ++ + + TN+PV+VK RIG+DD DSY L FI
Sbjct: 105 GCPSDRVQ-NGRFGACLMAEPALVAQCVNQMQSATNIPVTVKSRIGIDDLDSYEFLHTFI 163
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+VS + RHFIIH+RKA L G+SP +NR +PPL Y+ Y + DF DL ++NGGI T
Sbjct: 164 EEVSK-ADCRHFIIHARKAWLTGLSPKQNRDVPPLDYDRVYQIKNDFKDLEVSINGGIKT 222
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
E N L+ VM+GR Y +P Y L D IY + + L+R +V++ Y D
Sbjct: 223 FSEANEHLQH-IDGVMIGREIYNSP-YMLADADNEIYQSDTIKLSRSEVIDLMVPYIDET 280
Query: 185 LGTYGNNRPHV 195
+ G HV
Sbjct: 281 IAN-GGRAWHV 290
>UNIPROTKB|Q607T6 [details] [associations]
symbol:MCA1669 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:YP_114112.1
ProteinModelPortal:Q607T6 GeneID:3102115 KEGG:mca:MCA1669
PATRIC:22607174 Uniprot:Q607T6
Length = 360
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 86/214 (40%), Positives = 118/214 (55%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPSP+V G FG LM +P+ V + + + +VPV+VK RIG+DD DSY L F+
Sbjct: 116 GCPSPRVQT-GRFGACLMAEPERVADCVRAMCEAVSVPVTVKTRIGIDDRDSYEDLLHFV 174
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ R FI+H+RKA L G+SP ENR PPL+Y+ L + P+L LNGGI T
Sbjct: 175 TIVAEAG-CRTFIVHARKAWLQGLSPKENRQTPPLRYDVVRRLKSELPELAIVLNGGIQT 233
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG-APSSGLTRRQVVEKYQIYGDA 183
+DE L VM+GRAAY NP Y L D YG + TR +V+E + Y
Sbjct: 234 LDEAERHL-SWCDGVMIGRAAYHNP-YLLAEADRRCYGHSDVRPRTREEVIEDFMPYVRN 291
Query: 184 ILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +R H + + +L +H+ PG ++R
Sbjct: 292 ELSK--GSRLHA--LTRHILGLYHATPGGKRWRR 321
>UNIPROTKB|Q8EAJ0 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004653 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
Length = 335
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 84/213 (39%), Positives = 121/213 (56%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L FI
Sbjct: 101 GCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFI 159
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V + FIIH+RKA L G+SP ENR IPPL Y+ Y L RD+P L ++NGGI +
Sbjct: 160 DTVMAKG-CGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQLKRDYPALNISINGGITS 218
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ L+ VMVGR AYQNP Y L VD + G+ + ++R V+E Y +A
Sbjct: 219 LEQAQTHLQH-LDGVMVGREAYQNP-YMLAQVDQVLCGSTKAVMSREAVIEAMLPYIEAH 276
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + + + ++ F PG ++R
Sbjct: 277 LQVGGR----LNHITRHMIGLFQGLPGARAWRR 305
>TIGR_CMR|SO_3912 [details] [associations]
symbol:SO_3912 "TIM-barrel protein, yjbN family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
Length = 335
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 84/213 (39%), Positives = 121/213 (56%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L FI
Sbjct: 101 GCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFI 159
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V + FIIH+RKA L G+SP ENR IPPL Y+ Y L RD+P L ++NGGI +
Sbjct: 160 DTVMAKG-CGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQLKRDYPALNISINGGITS 218
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ L+ VMVGR AYQNP Y L VD + G+ + ++R V+E Y +A
Sbjct: 219 LEQAQTHLQH-LDGVMVGREAYQNP-YMLAQVDQVLCGSTKAVMSREAVIEAMLPYIEAH 276
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + + + ++ F PG ++R
Sbjct: 277 LQVGGR----LNHITRHMIGLFQGLPGARAWRR 305
>UNIPROTKB|Q83D40 [details] [associations]
symbol:CBU_0904 "tRNA-dihydrouridine synthase"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
KEGG:cbu:CBU_0904 PATRIC:17930509
BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
Length = 353
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 84/220 (38%), Positives = 121/220 (55%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG L+ + + V + ++ ++A N+PVSVK R GVDD DSY L F+
Sbjct: 117 GCPSGRVIA-GRFGACLLKEAELVADCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFV 175
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ R FIIH+RKA L G+SPAENRT+PPL Y Y L +DFP L +NGGI T
Sbjct: 176 KTVAEAG-CRIFIIHARKAWLKGLSPAENRTVPPLAYPMVYQLKQDFPGLEIIINGGIKT 234
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA-------IYGAPSSGLTRRQVVEKY 177
++ +N LR+ VM+GR AY NP + D + + + LT ++V+ +Y
Sbjct: 235 IEAINDHLRE-VDGVMIGREAYANPLFCAAFDDLSKPVFSLGVADKKQTPLTPKRVLLRY 293
Query: 178 QIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
Y + N P + + + L F +PG ++R
Sbjct: 294 LPY---MAKQLANGVP-LYAMTRHLNGLFQGQPGAKKWRR 329
>TIGR_CMR|CBU_0904 [details] [associations]
symbol:CBU_0904 "TIM-barrel protein, yjbN family"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
KEGG:cbu:CBU_0904 PATRIC:17930509
BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
Length = 353
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 84/220 (38%), Positives = 121/220 (55%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG L+ + + V + ++ ++A N+PVSVK R GVDD DSY L F+
Sbjct: 117 GCPSGRVIA-GRFGACLLKEAELVADCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFV 175
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ R FIIH+RKA L G+SPAENRT+PPL Y Y L +DFP L +NGGI T
Sbjct: 176 KTVAEAG-CRIFIIHARKAWLKGLSPAENRTVPPLAYPMVYQLKQDFPGLEIIINGGIKT 234
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA-------IYGAPSSGLTRRQVVEKY 177
++ +N LR+ VM+GR AY NP + D + + + LT ++V+ +Y
Sbjct: 235 IEAINDHLRE-VDGVMIGREAYANPLFCAAFDDLSKPVFSLGVADKKQTPLTPKRVLLRY 293
Query: 178 QIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
Y + N P + + + L F +PG ++R
Sbjct: 294 LPY---MAKQLANGVP-LYAMTRHLNGLFQGQPGAKKWRR 329
>UNIPROTKB|Q884G7 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_791948.1 ProteinModelPortal:Q884G7 GeneID:1183773
KEGG:pst:PSPTO_2126 PATRIC:19995530
BioCyc:PSYR223283:GJIX-2167-MONOMER Uniprot:Q884G7
Length = 336
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 74/191 (38%), Positives = 110/191 (57%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P+ V + + + +PV+VK RIG++ DSY +LCDF+
Sbjct: 106 GCPSDRVQNN-MIGACLMAHPQLVADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFV 164
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V + F +H+R A+L G+SP ENR IPPL+Y+ L DFP+L LNGGI T
Sbjct: 165 GTVHDAG-CQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKTDFPELEIVLNGGIKT 223
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ + L+ VM+GR AY NP Y L VD ++G+ + ++R +E + Y A
Sbjct: 224 LEQCSEHLQT-FDGVMLGREAYHNP-YLLAQVDQQLFGSVAPVISRHAALESMRPYIAAH 281
Query: 185 LGTYGNNRPHV 195
+ + G N HV
Sbjct: 282 IAS-GGNMHHV 291
>TIGR_CMR|SPO_2374 [details] [associations]
symbol:SPO_2374 "tRNA-dihydrouridine synthase A"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0050660 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_167596.1 ProteinModelPortal:Q5LQV9 GeneID:3194172
KEGG:sil:SPO2374 PATRIC:23378123 Uniprot:Q5LQV9
Length = 344
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 91/256 (35%), Positives = 134/256 (52%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P V + ++ + +V V+VKCRIGVDD D L +
Sbjct: 97 NCGCPSDRVQS-GTFGAVLMKHPGLVADCVTAMREAVDVEVTVKCRIGVDDQDPETVLPE 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +++ R IIH+RKA L G+SP ENR IPPL Y+ + + FP + ++NGGI
Sbjct: 156 FLEQIAGAGCQR-VIIHARKAWLQGLSPKENRDIPPLDYDLVHRMKARFPGMHISINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+T+ A L G VM+GRAAY P L D IYG ++ V Y +
Sbjct: 215 DTLAAARAHLDAGLDGVMIGRAAYHQPADILCKADPLIYGTGTAS-DPVTAVRAMLPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPG-NGLFKRKADAAFQTC---KTVKSFLEETIV 238
A L T G R H + + +L F PG G + ++ A + + V++ L++ V
Sbjct: 274 AHLATGG--RLH--QITRHMLGLFAGRPGARGWRRMLSEGAVRPGAGPELVEAALDQ--V 327
Query: 239 AIPDSVLDSPIEEAPR 254
A ++P++ APR
Sbjct: 328 AGLWHTSETPLDPAPR 343
>UNIPROTKB|Q0C5H0 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0002943 "tRNA dihydrouridine
synthesis" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=ISS] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000158 GenomeReviews:CP000158_GR eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_759023.1 ProteinModelPortal:Q0C5H0 STRING:Q0C5H0
GeneID:4288047 KEGG:hne:HNE_0293 PATRIC:32213376
BioCyc:HNEP228405:GI69-337-MONOMER Uniprot:Q0C5H0
Length = 328
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 84/216 (38%), Positives = 119/216 (55%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + ++ + A ++PV+VK RI +DD + L
Sbjct: 93 NCGCPSERVQS-GAFGACLMAEPDLVADCVAAMRAAVSIPVTVKNRIAIDDLPARETLFT 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KVS ++ F +H+RKA L G+SP ENR +PPL Y L PDLT LNGGI
Sbjct: 152 FIEKVS-VAGCSVFTVHARKAWLKGLSPKENREVPPLDYGLVAELKTARPDLTIILNGGI 210
Query: 123 NTVDEVNAALRKGAHH-VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYG 181
T+D+ + G VM+GRAAYQ P LG VD+ ++G + + V Y+ Y
Sbjct: 211 ATIDQCRDHI--GVFDGVMLGRAAYQTPGL-LGQVDSDLFGEGAM-IAAGDAVRAYEPYI 266
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L G+N H + + +L F +PG ++R
Sbjct: 267 AARLAE-GSNL-HA--MTRHMLGLFAGQPGARQWRR 298
>UNIPROTKB|O53835 [details] [associations]
symbol:dus "Probable tRNA-dihydrouridine synthase"
species:1773 "Mycobacterium tuberculosis" [GO:0019217 "regulation
of fatty acid metabolic process" evidence=IDA] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0050660 GO:GO:0019217 EMBL:BX842574
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:G70810
RefSeq:NP_215338.1 RefSeq:NP_335273.1 RefSeq:YP_006514173.1
ProteinModelPortal:O53835 SMR:O53835
EnsemblBacteria:EBMYCT00000002102 EnsemblBacteria:EBMYCT00000070313
GeneID:13318720 GeneID:885380 GeneID:926148 KEGG:mtc:MT0845
KEGG:mtu:Rv0823c KEGG:mtv:RVBD_0823c PATRIC:18123594
TubercuList:Rv0823c HOGENOM:HOG000217856 OMA:PIARKHI
ProtClustDB:CLSK871859 Uniprot:O53835
Length = 389
Score = 161 (61.7 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 66/246 (26%), Positives = 109/246 (44%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGE--AMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLC 61
GCP PKV G G +L + G+ A +V A T++PV+VK RIG+DD +++
Sbjct: 119 GCPVPKVTKRGG-GAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDD--AHHTHL 175
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
D +++ +H+R A A+ I LK +R P L NG
Sbjct: 176 D-AGRIAEAEGAAAVALHARTAAQRYSGTADWEQIARLKQH-----VRTIPVLG---NGD 226
Query: 122 INTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVDTAIYGAPS-SGLTRRQVVEKYQI 179
I + A + G V++GR PW + A G+P+ + T +V + +
Sbjct: 227 IYDAGDALAMMSTTGCDGVVIGRGCLGRPWL-FAELSAAFTGSPAPTPPTLGEVADIIRR 285
Query: 180 YGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE--ETI 237
+G + +G ++ +RD+ K + + H P G R+A A +T + L+ +
Sbjct: 286 HGTLLAAHFGEDKG-MRDIRKHIAWYLHGFPA-GSALRRALAMVKTFDELDCLLDRLDGT 343
Query: 238 VAIPDS 243
V PDS
Sbjct: 344 VPFPDS 349
>UNIPROTKB|Q87VS1 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016853 GenomeReviews:AE016853_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:NP_794598.1 ProteinModelPortal:Q87VS1
GeneID:1186547 KEGG:pst:PSPTO_4864 PATRIC:20001236
ProtClustDB:CLSK868944 BioCyc:PSYR223283:GJIX-4930-MONOMER
Uniprot:Q87VS1
Length = 337
Score = 147 (56.8 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 60/250 (24%), Positives = 105/250 (42%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP+ KV G +L+ D + V + + + A +VPV++K R G D D+ N L +
Sbjct: 102 GCPAKKVCNKAA-GSALLKDEQLVNDILQAVVAAVDVPVTLKIRTGWD-RDNRNGLT--V 157
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
K++ + + +H R AE TI A+++ + NG I++
Sbjct: 158 AKIAEQAGIQALAVHGRTRADLYTGEAEYDTI---------AMIKQAVSIPVFANGDIDS 208
Query: 125 VDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDA 183
++ L+ GA +++GRAA PW ++ + + + VE+ + A
Sbjct: 209 PEKARHVLQATGADGLLIGRAAQGRPWI-FREIEHYLLTGKTLPALQSSEVERILLEHLA 267
Query: 184 ILGTYGNNRPHVRDVMKPLLHFFHSEPG----NGLFKRKADAAFQTCKTVKSFLEETIVA 239
L + + VR K + + + PG LF R D Q C V+ F +
Sbjct: 268 ALHVFYGDVMGVRIARKHVGWYLATLPGAREFRALFNRLEDTEAQ-CANVREFFSQGCKG 326
Query: 240 IPDSVLDSPI 249
PD+ D +
Sbjct: 327 -PDNQNDKEV 335
>TIGR_CMR|SPO_2089 [details] [associations]
symbol:SPO_2089 "tRNA-dihydrouridine synthase, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI RefSeq:YP_167319.1 ProteinModelPortal:Q5LRN6
GeneID:3193240 KEGG:sil:SPO2089 PATRIC:23377519
ProtClustDB:CLSK2767269 Uniprot:Q5LRN6
Length = 327
Score = 145 (56.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 63/235 (26%), Positives = 97/235 (41%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP+ KV +G G +L+ P + + A +VPV++K R+G DD + D
Sbjct: 101 GCPAKKVT-NGYSGSALLKTPDHALRLIEAVVAAVDVPVTLKTRLGWDD--TLMNAPDVA 157
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+ + R IH R A+ I A +R+ D+ NG I
Sbjct: 158 RRAAEAG-VRMVTIHGRTRCQFYKGRADWAAI---------AAVREAVDVPLIANGDITC 207
Query: 125 VDEVNAAL-RKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTR-RQVVEKYQIYGD 182
AL R GA VMVGR A PW L + A+YG P+ + + ++ + +
Sbjct: 208 AHTARQALDRSGADGVMVGRGAQGRPWL-LAQIAHALYGTPAPEVPQGAELADMVARHYQ 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETI 237
A+L YG +R V + L ++ E RK + +TV L E +
Sbjct: 267 AMLDFYGRELG-LR-VARKHLGWYMDEAATPAPLRKLVLTARDPETVLHLLPEAL 319
>UNIPROTKB|Q607L4 [details] [associations]
symbol:MCA1745 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_114184.1 ProteinModelPortal:Q607L4 GeneID:3104455
KEGG:mca:MCA1745 PATRIC:22607332 Uniprot:Q607L4
Length = 327
Score = 137 (53.3 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 48/157 (30%), Positives = 70/157 (44%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP+ KV G +L+ D K V + + VPV++K R G D S N + I
Sbjct: 99 GCPAKKVCNVAA-GSALLRDEKLVANILEAVVQAVPVPVTLKIRTGWDSA-SRNAVS--I 154
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
K++ + R +H R AE TI +K A+ P + NG I++
Sbjct: 155 GKIAESAGIRALTVHGRTRACGFAGAAEYSTITEVKK----AI--GIPVIA---NGDIDS 205
Query: 125 VDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVDTAI 160
+ A LR GA VM+GR A+ PW L +D +
Sbjct: 206 PGKAEAVLRSTGADAVMIGRGAWGRPWL-LREIDARL 241
>TIGR_CMR|APH_0575 [details] [associations]
symbol:APH_0575 "putative tRNA-dihydrouridine synthase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_505166.1 ProteinModelPortal:Q2GKD5 STRING:Q2GKD5
GeneID:3930783 KEGG:aph:APH_0575 PATRIC:20949816
ProtClustDB:CLSK2766800 BioCyc:APHA212042:GHPM-599-MONOMER
Uniprot:Q2GKD5
Length = 315
Score = 132 (51.5 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 58/221 (26%), Positives = 94/221 (42%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP+ KV G G +LM D + M + VPV+VK R+G D+ N +
Sbjct: 94 GCPAKKVVD-GYAGSALMKDEVIATKIMESVVKAVKVPVTVKMRMG---WDTTNLNAPTL 149
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV+ + IH R A+ + + +K + + +NG I T
Sbjct: 150 AKVAEDVGIQMITIHGRTRSQMFSGSADWKFVKRVK---------ECVKIPVIVNGDIRT 200
Query: 125 VDEVNAALRK-GAHHVMVGRAAYQNPWY---TLGHV-DTAIYGAPSSGLTRRQVVEKYQI 179
+D++ AL + GA VM+GR AY PW L + ++ I P+ +++ Y
Sbjct: 201 LDDIVVALNESGADGVMIGRGAYGKPWLIKQALSFMKNSEILPEPTKSEKLAIILDHY-- 258
Query: 180 YGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKAD 220
D L YG + V+ + K L + S G F+ + +
Sbjct: 259 --DYALDYYGKDLG-VKILRKHLSWYSSSYSGASYFRAQVN 296
>UNIPROTKB|Q81ZD5 [details] [associations]
symbol:BAS0319 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
OMA:NTESYCH ProtClustDB:CLSK865525
BioCyc:BANT260799:GJAJ-361-MONOMER
BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
Length = 329
Score = 122 (48.0 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 44/149 (29%), Positives = 67/149 (44%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP P VA G G L+L P E + A +PVSVK R+G + + I
Sbjct: 104 GCPVPNVASRGK-GSGLILRPDVAAELIQAAKAG-GLPVSVKTRLGFKELSEWEDWLTHI 161
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI 122
+K + + H + +R+ + A IP +K LRD P+ T+NG I
Sbjct: 162 FKQDIANLSIH--LRTREEMSQ--VDAHWELIPEIKK------LRDRIAPNTLLTINGDI 211
Query: 123 -NTVDEVNAALRKGAHHVMVGRAAYQNPW 150
+ + A + G VM+GR ++NP+
Sbjct: 212 PDRKTGLELAEKYGIDGVMIGRGIFKNPF 240
>TIGR_CMR|BA_0334 [details] [associations]
symbol:BA_0334 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
OMA:NTESYCH ProtClustDB:CLSK865525
BioCyc:BANT260799:GJAJ-361-MONOMER
BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
Length = 329
Score = 122 (48.0 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 44/149 (29%), Positives = 67/149 (44%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP P VA G G L+L P E + A +PVSVK R+G + + I
Sbjct: 104 GCPVPNVASRGK-GSGLILRPDVAAELIQAAKAG-GLPVSVKTRLGFKELSEWEDWLTHI 161
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI 122
+K + + H + +R+ + A IP +K LRD P+ T+NG I
Sbjct: 162 FKQDIANLSIH--LRTREEMSQ--VDAHWELIPEIKK------LRDRIAPNTLLTINGDI 211
Query: 123 -NTVDEVNAALRKGAHHVMVGRAAYQNPW 150
+ + A + G VM+GR ++NP+
Sbjct: 212 PDRKTGLELAEKYGIDGVMIGRGIFKNPF 240
>UNIPROTKB|Q3A9L8 [details] [associations]
symbol:CHY_2369 "tRNA-dihydrouridine synthase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
Identities = 40/147 (27%), Positives = 65/147 (44%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP+PK+ +G G +LML P+ + + + +VPVSVK R G DD+ + N + +F
Sbjct: 101 GCPAPKIVKNG-EGAALMLKPELAEKIVMAVKNAVSVPVSVKIRKGFDDN-TVNAI-EFA 157
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
++ + +H R A+ I +K + NG +++
Sbjct: 158 QRMEAAGADL-ITVHGRTREQFYSGKADWEIIRRVKQAVKVKVAG---------NGDVDS 207
Query: 125 VDEVNAALR-KGAHHVMVGRAAYQNPW 150
+ L G VM+GRA NPW
Sbjct: 208 PQKAKEMLELTGVDFVMIGRAVMGNPW 234
>TIGR_CMR|CHY_2369 [details] [associations]
symbol:CHY_2369 "putative TIM-barrel protein, NifR3
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
Identities = 40/147 (27%), Positives = 65/147 (44%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP+PK+ +G G +LML P+ + + + +VPVSVK R G DD+ + N + +F
Sbjct: 101 GCPAPKIVKNG-EGAALMLKPELAEKIVMAVKNAVSVPVSVKIRKGFDDN-TVNAI-EFA 157
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
++ + +H R A+ I +K + NG +++
Sbjct: 158 QRMEAAGADL-ITVHGRTREQFYSGKADWEIIRRVKQAVKVKVAG---------NGDVDS 207
Query: 125 VDEVNAALR-KGAHHVMVGRAAYQNPW 150
+ L G VM+GRA NPW
Sbjct: 208 PQKAKEMLELTGVDFVMIGRAVMGNPW 234
>TIGR_CMR|GSU_1005 [details] [associations]
symbol:GSU_1005 "dihydrouridine synthase family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI HOGENOM:HOG000217853 RefSeq:NP_952059.1
ProteinModelPortal:Q74EF7 GeneID:2685628 KEGG:gsu:GSU1005
PATRIC:22024782 ProtClustDB:CLSK828131
BioCyc:GSUL243231:GH27-991-MONOMER Uniprot:Q74EF7
Length = 325
Score = 117 (46.2 bits), Expect = 0.00018, P = 0.00018
Identities = 54/217 (24%), Positives = 88/217 (40%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS-YNQLCDF 63
GCP KV G G G +LM +P V + + T +P++VK R G D+ + Q+
Sbjct: 102 GCPVKKVVGTGA-GSALMREPDKVRAIVRAVRRATRLPLTVKIRSGWSCEDANFIQIARI 160
Query: 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 123
+ + T H SR + G A+ + LK ++ +G +
Sbjct: 161 AEEEGCNAVTLH--PRSRAQMFEGT--ADWTKLAELKQAVAIPVIG---------SGDLF 207
Query: 124 TVDEVNAAL-RKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGL-TRRQVVEKYQIYG 181
+ +V A L R G VM+ R A NPW +D P++ R V + +
Sbjct: 208 SAADVAAMLDRTGCDGVMIARGALGNPWIFRQALDLMAGREPAAASPAERLAVARRHL-- 265
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK 218
A+ R R++ K L + H PG F+++
Sbjct: 266 -ALFTEMAGERVAAREMRKHLGWYSHGLPGAAQFRKE 301
>DICTYBASE|DDB_G0277081 [details] [associations]
symbol:DDB_G0277081 "tRNA-dihydrouridine synthase A"
species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
dictyBase:DDB_G0277081 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000019 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 RefSeq:XP_642936.1 ProteinModelPortal:Q86L21
EnsemblProtists:DDB0217898 GeneID:8620805 KEGG:ddi:DDB_G0277081
InParanoid:Q86L21 OMA:PIVAQFF Uniprot:Q86L21
Length = 392
Score = 116 (45.9 bits), Expect = 0.00033, P = 0.00033
Identities = 44/152 (28%), Positives = 70/152 (46%)
Query: 5 GCPSPKVAG-HGCFGVSLMLDPKFVGEAMSVI--AANTNVPVSVKCRIGVDDHDSYNQLC 61
GCPS KV G +L+ +P E + + A N PVSVK RIG D + ++
Sbjct: 102 GCPSRKVLSPKQASGAALITNPSLAKEIVKITKEALNFEKPVSVKTRIGFDKIE-IDEWI 160
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPA--ENRTIPPLKYEYYYALLRDFPDLTFTLN 119
I + T H + ++K L + PA E++ + + E + P+ N
Sbjct: 161 PLILESEPACLTLH--LRTKKEL--SLVPAHWEHQVLDRV-VELRNQIS---PNTLLVGN 212
Query: 120 GGINTVDE-VNAALRKGAHHVMVGRAAYQNPW 150
G + T ++ ++ + G VM+GRA Y NPW
Sbjct: 213 GDVETYEQGIDYINQFGIDGVMIGRAVYGNPW 244
>UNIPROTKB|Q8EJR8 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 114 (45.2 bits), Expect = 0.00039, P = 0.00039
Identities = 49/188 (26%), Positives = 81/188 (43%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD-DHDSYNQLCDF 63
GCP+ KV G +LM +P V + + + A +VPV++K R G + +H + Q+
Sbjct: 99 GCPAKKV-NKKLAGSALMQNPPLVKDILQAVVAAVDVPVTLKIRTGWEPEHRNGVQIAQI 157
Query: 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 123
S H +R+ + G AE TI +K + NG I+
Sbjct: 158 AEDCGIASLAVHG--RTRQCMYKG--NAEYDTIKAIKQNV---------SIPVVANGDID 204
Query: 124 TVDEVNAALR-KGAHHVMVGRAAYQNPWY--TLGH-VDTAIYGAPSSGLTRRQVV----- 174
+ ++ L G +M+GR A PW + H ++T AP +RQV+
Sbjct: 205 SPEKARFVLDYTGVDALMIGRGAQGRPWIFREIQHYLETGNKLAPIEVAEQRQVMLEHLT 264
Query: 175 EKYQIYGD 182
+ Y +YG+
Sbjct: 265 KLYDLYGE 272
>TIGR_CMR|SO_0394 [details] [associations]
symbol:SO_0394 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 114 (45.2 bits), Expect = 0.00039, P = 0.00039
Identities = 49/188 (26%), Positives = 81/188 (43%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD-DHDSYNQLCDF 63
GCP+ KV G +LM +P V + + + A +VPV++K R G + +H + Q+
Sbjct: 99 GCPAKKV-NKKLAGSALMQNPPLVKDILQAVVAAVDVPVTLKIRTGWEPEHRNGVQIAQI 157
Query: 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 123
S H +R+ + G AE TI +K + NG I+
Sbjct: 158 AEDCGIASLAVHG--RTRQCMYKG--NAEYDTIKAIKQNV---------SIPVVANGDID 204
Query: 124 TVDEVNAALR-KGAHHVMVGRAAYQNPWY--TLGH-VDTAIYGAPSSGLTRRQVV----- 174
+ ++ L G +M+GR A PW + H ++T AP +RQV+
Sbjct: 205 SPEKARFVLDYTGVDALMIGRGAQGRPWIFREIQHYLETGNKLAPIEVAEQRQVMLEHLT 264
Query: 175 EKYQIYGD 182
+ Y +YG+
Sbjct: 265 KLYDLYGE 272
>UNIPROTKB|Q81VW4 [details] [associations]
symbol:BA_0075 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
HOGENOM:HOG000217853 RefSeq:NP_842644.2 ProteinModelPortal:Q81VW4
IntAct:Q81VW4 DNASU:1087319 EnsemblBacteria:EBBACT00000009344
GeneID:1087319 KEGG:ban:BA_0075 PATRIC:18777630
ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 86 (35.3 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD-DH 54
GCP PK+ G +LDP + E ++ + PV+VK RIG D DH
Sbjct: 108 GCPVPKIVKCDA-GAKWLLDPNKIYEMVAAVVDAVEKPVTVKMRIGWDEDH 157
Score = 66 (28.3 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 24/95 (25%), Positives = 39/95 (41%)
Query: 119 NGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKY 177
NG + T + L + G VM+GRAA +PW V G T R+ ++
Sbjct: 209 NGDVATPQDAKRMLDEIGVDGVMIGRAALGDPWMIYRTVKYLETGELMPEPTVREKIDVC 268
Query: 178 QIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 212
++ D ++ N VR++ K + GN
Sbjct: 269 MLHLDRLIDLK-NESVAVREMRKHAAWYLKGIRGN 302
>TIGR_CMR|BA_0075 [details] [associations]
symbol:BA_0075 "TIM-barrel protein, putative, NifR3 family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 HOGENOM:HOG000217853 RefSeq:NP_842644.2
ProteinModelPortal:Q81VW4 IntAct:Q81VW4 DNASU:1087319
EnsemblBacteria:EBBACT00000009344 GeneID:1087319 KEGG:ban:BA_0075
PATRIC:18777630 ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 86 (35.3 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD-DH 54
GCP PK+ G +LDP + E ++ + PV+VK RIG D DH
Sbjct: 108 GCPVPKIVKCDA-GAKWLLDPNKIYEMVAAVVDAVEKPVTVKMRIGWDEDH 157
Score = 66 (28.3 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 24/95 (25%), Positives = 39/95 (41%)
Query: 119 NGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKY 177
NG + T + L + G VM+GRAA +PW V G T R+ ++
Sbjct: 209 NGDVATPQDAKRMLDEIGVDGVMIGRAALGDPWMIYRTVKYLETGELMPEPTVREKIDVC 268
Query: 178 QIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 212
++ D ++ N VR++ K + GN
Sbjct: 269 MLHLDRLIDLK-NESVAVREMRKHAAWYLKGIRGN 302
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.426 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 282 282 0.00083 115 3 11 22 0.50 33
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 602 (64 KB)
Total size of DFA: 207 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.20u 0.19s 24.39t Elapsed: 00:00:01
Total cpu time: 24.21u 0.19s 24.40t Elapsed: 00:00:01
Start: Fri May 10 03:11:15 2013 End: Fri May 10 03:11:16 2013