BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023442
(282 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255553550|ref|XP_002517816.1| tRNA-dihydrouridine synthase A, putative [Ricinus communis]
gi|223543088|gb|EEF44623.1| tRNA-dihydrouridine synthase A, putative [Ricinus communis]
Length = 375
Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/279 (82%), Positives = 255/279 (91%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSP+VAGHGCFGV LMLDPKFVGEAMSVIAANT+VPVSVKCRIGVD+HDSYN+LCD
Sbjct: 97 NCGCPSPRVAGHGCFGVRLMLDPKFVGEAMSVIAANTDVPVSVKCRIGVDNHDSYNELCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIYKVSSLSPT+HFIIHSRKALLNGISPAENR IPPLKYEYY+ALLRDFPDL FT+NGGI
Sbjct: 157 FIYKVSSLSPTKHFIIHSRKALLNGISPAENRKIPPLKYEYYFALLRDFPDLRFTINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
N +DEVN ALR+GAH VMVGRAA+ NPW LGHVD+AIYGAP SGLTRRQV+E+YQ Y D
Sbjct: 217 NCIDEVNLALREGAHGVMVGRAAFNNPWTVLGHVDSAIYGAPESGLTRRQVLEQYQAYAD 276
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
AILGTYGNNRP+VRDV+KPLL F+SEPGNGL+KR+ADAAFQ+C T+KSF EET+VAIPD
Sbjct: 277 AILGTYGNNRPNVRDVVKPLLGLFYSEPGNGLWKRRADAAFQSCTTIKSFFEETLVAIPD 336
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVLYA 281
+VLDSPI EAP GR+DLF +V LLPPPY REQ+V YA
Sbjct: 337 TVLDSPIAEAPSGRQDLFTNVRGLLPPPYATREQDVAYA 375
>gi|225450085|ref|XP_002277955.1| PREDICTED: tRNA-dihydrouridine synthase A-like isoform 1 [Vitis
vinifera]
Length = 433
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 226/281 (80%), Positives = 257/281 (91%), Gaps = 2/281 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKVAGHGCFGV LMLDPKFV EAMSVIAAN++VPVSVKCRIGVDDHDSYN+LCD
Sbjct: 153 NCGCPSPKVAGHGCFGVRLMLDPKFVAEAMSVIAANSDVPVSVKCRIGVDDHDSYNELCD 212
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIYKVSS SPTRHFIIHSRKALLNGISPA+NR IPPLKYEYY+ LLRDFPDL FT+NGGI
Sbjct: 213 FIYKVSSQSPTRHFIIHSRKALLNGISPADNRKIPPLKYEYYFGLLRDFPDLRFTINGGI 272
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
N VDEVNAALR+GAH VMVGRAAY NPWYTLGHVD+A+YGAP S L+RRQV+E+YQ+YGD
Sbjct: 273 NCVDEVNAALRQGAHGVMVGRAAYHNPWYTLGHVDSAVYGAPVSDLSRRQVLEQYQVYGD 332
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++L YG +RP +R+V+KPLLHFF+SEPGNGL+KRKADAAF CKT+KSFLEET+VAIPD
Sbjct: 333 SVLEKYGPHRPSIREVVKPLLHFFYSEPGNGLWKRKADAAFFHCKTIKSFLEETLVAIPD 392
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKA--REQEVLYA 281
SVLD+P+ +AP GREDLFA++ DLLP PY+ +EQEVLYA
Sbjct: 393 SVLDAPVAKAPSGREDLFANLSDLLPLPYETSEQEQEVLYA 433
>gi|449463996|ref|XP_004149715.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Cucumis sativus]
Length = 431
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 223/277 (80%), Positives = 254/277 (91%), Gaps = 1/277 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKVAGHGCFGV LMLDPKFVGEAMSVIAA T+ PVSVKCRIGVDDHDSYN+LCD
Sbjct: 153 NCGCPSPKVAGHGCFGVRLMLDPKFVGEAMSVIAAKTDAPVSVKCRIGVDDHDSYNELCD 212
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIYKVSSLSPT+HF+IHSRKALLNGISPAENRTIPPLKYEY+YAL+RDFPDL FT+NGGI
Sbjct: 213 FIYKVSSLSPTKHFVIHSRKALLNGISPAENRTIPPLKYEYFYALMRDFPDLRFTINGGI 272
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
NTVDE NAALR GAH VM+GRAAYQNPW TLGHVDTAIYGAPSSG+TRRQV+E+YQ+YGD
Sbjct: 273 NTVDEANAALRLGAHGVMMGRAAYQNPWRTLGHVDTAIYGAPSSGITRRQVLEQYQVYGD 332
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++LG YG N+P++RDV+KPLLH F+++PGNG +KRKADAAF CKT+KSF EETIVAIPD
Sbjct: 333 SVLGRYG-NKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFMHCKTIKSFFEETIVAIPD 391
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
VLD+P+ E P GREDLFA+ L+PPPY+ REQ+V+
Sbjct: 392 YVLDAPVAEPPSGREDLFANTLSLMPPPYEDREQKVV 428
>gi|449516697|ref|XP_004165383.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Cucumis sativus]
Length = 431
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 223/277 (80%), Positives = 254/277 (91%), Gaps = 1/277 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKVAGHGCFGV LMLDPKFVGEAMSVIAA T+ PVSVKCRIGVDDHDSYN+LCD
Sbjct: 153 NCGCPSPKVAGHGCFGVRLMLDPKFVGEAMSVIAAKTDAPVSVKCRIGVDDHDSYNELCD 212
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIYKVSSLSPT+HF+IHSRKALLNGISPAENRTIPPLKYEY+YAL+RDFPDL FT+NGGI
Sbjct: 213 FIYKVSSLSPTKHFVIHSRKALLNGISPAENRTIPPLKYEYFYALMRDFPDLRFTINGGI 272
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
NTVDE NAALR GAH VM+GRAAYQNPW TLGHVDTAIYGAPSSG+TRRQV+E+YQ+YGD
Sbjct: 273 NTVDEANAALRLGAHGVMMGRAAYQNPWRTLGHVDTAIYGAPSSGITRRQVLEQYQVYGD 332
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++LG YG N+P++RDV+KPLLH F+++PGNG +KRKADAAF CKT+KSF EETIVAIPD
Sbjct: 333 SVLGRYG-NKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFMHCKTIKSFFEETIVAIPD 391
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
VLD+P+ E P GREDLFA+ L+PPPY+ REQ+V+
Sbjct: 392 YVLDAPVAEPPSGREDLFANTLSLMPPPYEDREQKVV 428
>gi|297736275|emb|CBI24913.3| unnamed protein product [Vitis vinifera]
Length = 423
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 226/281 (80%), Positives = 257/281 (91%), Gaps = 2/281 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKVAGHGCFGV LMLDPKFV EAMSVIAAN++VPVSVKCRIGVDDHDSYN+LCD
Sbjct: 143 NCGCPSPKVAGHGCFGVRLMLDPKFVAEAMSVIAANSDVPVSVKCRIGVDDHDSYNELCD 202
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIYKVSS SPTRHFIIHSRKALLNGISPA+NR IPPLKYEYY+ LLRDFPDL FT+NGGI
Sbjct: 203 FIYKVSSQSPTRHFIIHSRKALLNGISPADNRKIPPLKYEYYFGLLRDFPDLRFTINGGI 262
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
N VDEVNAALR+GAH VMVGRAAY NPWYTLGHVD+A+YGAP S L+RRQV+E+YQ+YGD
Sbjct: 263 NCVDEVNAALRQGAHGVMVGRAAYHNPWYTLGHVDSAVYGAPVSDLSRRQVLEQYQVYGD 322
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++L YG +RP +R+V+KPLLHFF+SEPGNGL+KRKADAAF CKT+KSFLEET+VAIPD
Sbjct: 323 SVLEKYGPHRPSIREVVKPLLHFFYSEPGNGLWKRKADAAFFHCKTIKSFLEETLVAIPD 382
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKA--REQEVLYA 281
SVLD+P+ +AP GREDLFA++ DLLP PY+ +EQEVLYA
Sbjct: 383 SVLDAPVAKAPSGREDLFANLSDLLPLPYETSEQEQEVLYA 423
>gi|359487300|ref|XP_003633563.1| PREDICTED: tRNA-dihydrouridine synthase A-like isoform 2 [Vitis
vinifera]
Length = 377
Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust.
Identities = 226/281 (80%), Positives = 257/281 (91%), Gaps = 2/281 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKVAGHGCFGV LMLDPKFV EAMSVIAAN++VPVSVKCRIGVDDHDSYN+LCD
Sbjct: 97 NCGCPSPKVAGHGCFGVRLMLDPKFVAEAMSVIAANSDVPVSVKCRIGVDDHDSYNELCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIYKVSS SPTRHFIIHSRKALLNGISPA+NR IPPLKYEYY+ LLRDFPDL FT+NGGI
Sbjct: 157 FIYKVSSQSPTRHFIIHSRKALLNGISPADNRKIPPLKYEYYFGLLRDFPDLRFTINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
N VDEVNAALR+GAH VMVGRAAY NPWYTLGHVD+A+YGAP S L+RRQV+E+YQ+YGD
Sbjct: 217 NCVDEVNAALRQGAHGVMVGRAAYHNPWYTLGHVDSAVYGAPVSDLSRRQVLEQYQVYGD 276
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++L YG +RP +R+V+KPLLHFF+SEPGNGL+KRKADAAF CKT+KSFLEET+VAIPD
Sbjct: 277 SVLEKYGPHRPSIREVVKPLLHFFYSEPGNGLWKRKADAAFFHCKTIKSFLEETLVAIPD 336
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKA--REQEVLYA 281
SVLD+P+ +AP GREDLFA++ DLLP PY+ +EQEVLYA
Sbjct: 337 SVLDAPVAKAPSGREDLFANLSDLLPLPYETSEQEQEVLYA 377
>gi|224055152|ref|XP_002298425.1| predicted protein [Populus trichocarpa]
gi|222845683|gb|EEE83230.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/279 (81%), Positives = 252/279 (90%), Gaps = 2/279 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKVAGHGCFGV LMLDPKFVGEAMSVIAANT+VPVSVKCRIG+DDHDSYN+LCD
Sbjct: 97 NCGCPSPKVAGHGCFGVRLMLDPKFVGEAMSVIAANTDVPVSVKCRIGLDDHDSYNELCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIYKVSSLSPT+HFIIHSRKALLNGISPA+NR IPPLKYEYYYALLRDFPDL FT+NGGI
Sbjct: 157 FIYKVSSLSPTKHFIIHSRKALLNGISPADNRRIPPLKYEYYYALLRDFPDLRFTINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
N VDEVNAALR+GAH VMVGRAAY W TL HVDTAIYGAPSSGLTRRQV+E+YQ+YGD
Sbjct: 217 NCVDEVNAALREGAHGVMVGRAAYNYLWNTLAHVDTAIYGAPSSGLTRRQVLEQYQVYGD 276
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQ--TCKTVKSFLEETIVAI 240
A+LGTYGN+RP++RD++KPL FF+SEPGN L+KRKADAAFQ TVKSF EET+VAI
Sbjct: 277 AVLGTYGNSRPNIRDLIKPLFGFFYSEPGNNLWKRKADAAFQMKNITTVKSFFEETLVAI 336
Query: 241 PDSVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
PD+VLDS E P GR+DLFA+V LLPPPY+ REQEV+
Sbjct: 337 PDAVLDSHAAELPSGRKDLFANVRGLLPPPYETREQEVV 375
>gi|224106093|ref|XP_002314040.1| predicted protein [Populus trichocarpa]
gi|222850448|gb|EEE87995.1| predicted protein [Populus trichocarpa]
Length = 380
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 219/279 (78%), Positives = 249/279 (89%), Gaps = 2/279 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS KVAGHGCFG LMLDPKFV EAMSVIAANT+VPVSVKCRIGVDDHDSYN+LCD
Sbjct: 97 NCGCPSAKVAGHGCFGARLMLDPKFVSEAMSVIAANTDVPVSVKCRIGVDDHDSYNELCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIYKVSSLSPT+HFIIHSRKALLNGISPA+NR IPPLKYEYYYALLRDFPDL FT+NGGI
Sbjct: 157 FIYKVSSLSPTKHFIIHSRKALLNGISPADNRRIPPLKYEYYYALLRDFPDLRFTINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ VDEVNAALR+GAH VMVGRAAY N W TL HVD+A+YG PSSGLTRRQV+E+YQ+YGD
Sbjct: 217 DCVDEVNAALREGAHGVMVGRAAYNNLWNTLAHVDSAVYGEPSSGLTRRQVLEQYQVYGD 276
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAF--QTCKTVKSFLEETIVAI 240
A+LGTYGNNRP++R++++PL FF+SEPGN L+KRKADAAF + KTVKSF EET+ AI
Sbjct: 277 AVLGTYGNNRPNMRELIRPLSGFFYSEPGNSLWKRKADAAFLNKNIKTVKSFFEETLAAI 336
Query: 241 PDSVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
PD+VLDSP+ E P GR DLFA+V LLPPPY+ R +EV+
Sbjct: 337 PDAVLDSPVAELPSGRIDLFANVRGLLPPPYETRTEEVV 375
>gi|356525006|ref|XP_003531118.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Glycine max]
Length = 430
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/277 (77%), Positives = 245/277 (88%), Gaps = 2/277 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKVAGHGCFGVSLML+PKFV EAMS IAA+TNVPVSVKCRIGVDDHDSYN+LCD
Sbjct: 153 NCGCPSPKVAGHGCFGVSLMLNPKFVAEAMSAIAASTNVPVSVKCRIGVDDHDSYNELCD 212
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIY+VSSLSPT+HFIIHSRKALLNGISPAENR+IPPLKYEY+Y LLRDFPDL FT+NGGI
Sbjct: 213 FIYQVSSLSPTKHFIIHSRKALLNGISPAENRSIPPLKYEYFYGLLRDFPDLRFTINGGI 272
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+VDEV+AA GAH VMVGRAAY NPW LGHVD AIYG PS LTRRQV+E+Y +YGD
Sbjct: 273 TSVDEVSAAREAGAHGVMVGRAAYNNPWQILGHVDAAIYGTPSCDLTRRQVLERYLVYGD 332
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++LG YG +RP +RD++KPLLH FHSEPGNGL+KRKADAAF+ C T++SF EET+VAIPD
Sbjct: 333 SVLGKYG-HRPTLRDIVKPLLHLFHSEPGNGLWKRKADAAFKNCTTMESFFEETLVAIPD 391
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
SVLDSP+ E P GR DLFA++H+LLP PY+ RE V+
Sbjct: 392 SVLDSPVAEPPPGR-DLFANMHNLLPAPYRTREATVI 427
>gi|21536881|gb|AAM61213.1| unknown [Arabidopsis thaliana]
Length = 404
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 211/280 (75%), Positives = 250/280 (89%), Gaps = 1/280 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKVAGHGCFGVSLML PK VGEAMS IAANTNVPV+VKCRIGVD+HDSY++LCD
Sbjct: 125 NCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSAIAANTNVPVTVKCRIGVDNHDSYDELCD 184
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIYKVS+LSPTRHFI+HSRKALL GISPA+NR IPPLKYEYYYAL+RDFPDL FT+NGGI
Sbjct: 185 FIYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGI 244
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+V +VNAAL++GAH VMVGRAAY NPW TLGHVDTA+YG PSSGLTRRQV+E+YQ+YGD
Sbjct: 245 TSVSKVNAALKEGAHGVMVGRAAYNNPWQTLGHVDTAVYGVPSSGLTRRQVLEQYQVYGD 304
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++LGT+GN RP+VRD++KPLL+ FHSE N L+KR+ADAAF+ C++V S LEE++ AIPD
Sbjct: 305 SVLGTHGNGRPNVRDLVKPLLNLFHSENANSLWKRRADAAFKECRSVGSLLEESLRAIPD 364
Query: 243 SVLDSPIEEAPR-GREDLFADVHDLLPPPYKAREQEVLYA 281
VLDSPI +P G ED+FADVH++LPPPY+A E+ +L A
Sbjct: 365 CVLDSPISGSPESGDEDVFADVHNVLPPPYEAGEEIILCA 404
>gi|145339824|ref|NP_567149.2| FMN-linked oxidoreductase-like protein protein [Arabidopsis
thaliana]
gi|24030197|gb|AAN41279.1| unknown protein [Arabidopsis thaliana]
gi|332646975|gb|AEE80496.1| FMN-linked oxidoreductase-like protein protein [Arabidopsis
thaliana]
Length = 419
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 211/280 (75%), Positives = 250/280 (89%), Gaps = 1/280 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKVAGHGCFGVSLML PK VGEAMS IAANTNVPV+VKCRIGVD+HDSY++LCD
Sbjct: 140 NCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSAIAANTNVPVTVKCRIGVDNHDSYDELCD 199
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIYKVS+LSPTRHFI+HSRKALL GISPA+NR IPPLKYEYYYAL+RDFPDL FT+NGGI
Sbjct: 200 FIYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGI 259
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+V +VNAAL++GAH VMVGRAAY NPW TLG VDTA+YG PSSGLTRRQV+E+YQ+YGD
Sbjct: 260 TSVSKVNAALKEGAHGVMVGRAAYNNPWQTLGQVDTAVYGVPSSGLTRRQVLEQYQVYGD 319
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++LGT+GN RP+VRD++KPLL+ FHSE GN L+KR+ADAAF+ C++V S LEE++ AIPD
Sbjct: 320 SVLGTHGNGRPNVRDLVKPLLNLFHSENGNSLWKRRADAAFKECRSVGSLLEESLRAIPD 379
Query: 243 SVLDSPIEEAPR-GREDLFADVHDLLPPPYKAREQEVLYA 281
VLDSPI +P G ED+FADVH++LPPPY+A E+ +L A
Sbjct: 380 CVLDSPISGSPESGDEDVFADVHNVLPPPYEAGEEIILCA 419
>gi|145332939|ref|NP_001078335.1| FMN-linked oxidoreductase-like protein protein [Arabidopsis
thaliana]
gi|332646976|gb|AEE80497.1| FMN-linked oxidoreductase-like protein protein [Arabidopsis
thaliana]
Length = 386
Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust.
Identities = 211/280 (75%), Positives = 250/280 (89%), Gaps = 1/280 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKVAGHGCFGVSLML PK VGEAMS IAANTNVPV+VKCRIGVD+HDSY++LCD
Sbjct: 107 NCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSAIAANTNVPVTVKCRIGVDNHDSYDELCD 166
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIYKVS+LSPTRHFI+HSRKALL GISPA+NR IPPLKYEYYYAL+RDFPDL FT+NGGI
Sbjct: 167 FIYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGI 226
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+V +VNAAL++GAH VMVGRAAY NPW TLG VDTA+YG PSSGLTRRQV+E+YQ+YGD
Sbjct: 227 TSVSKVNAALKEGAHGVMVGRAAYNNPWQTLGQVDTAVYGVPSSGLTRRQVLEQYQVYGD 286
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++LGT+GN RP+VRD++KPLL+ FHSE GN L+KR+ADAAF+ C++V S LEE++ AIPD
Sbjct: 287 SVLGTHGNGRPNVRDLVKPLLNLFHSENGNSLWKRRADAAFKECRSVGSLLEESLRAIPD 346
Query: 243 SVLDSPIEEAPR-GREDLFADVHDLLPPPYKAREQEVLYA 281
VLDSPI +P G ED+FADVH++LPPPY+A E+ +L A
Sbjct: 347 CVLDSPISGSPESGDEDVFADVHNVLPPPYEAGEEIILCA 386
>gi|388507496|gb|AFK41814.1| unknown [Lotus japonicus]
Length = 425
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 214/277 (77%), Positives = 241/277 (87%), Gaps = 1/277 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKVAGHGCFGVSLMLDPKFV EAMS I ANTNVPVSVKCRIGVDDHDSY++LCD
Sbjct: 147 NCGCPSPKVAGHGCFGVSLMLDPKFVAEAMSAITANTNVPVSVKCRIGVDDHDSYDELCD 206
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI+KVSSLSPT+HFIIHSRKALLNGISPAENR+IPPLKYEY+Y LLRDFPDLTFT+NGGI
Sbjct: 207 FIFKVSSLSPTKHFIIHSRKALLNGISPAENRSIPPLKYEYFYGLLRDFPDLTFTINGGI 266
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+VDEV AA GA+ V VGRAAY NPW+ LGHVDT IYGAPS LTRRQV+EKY +YGD
Sbjct: 267 TSVDEVYAAREAGAYGVTVGRAAYNNPWHILGHVDTVIYGAPSCSLTRRQVLEKYIVYGD 326
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++LG YG RP VRD++KPLL+ FHS PGNGL+KRKADAAF+ C T+KSF EET+VAIPD
Sbjct: 327 SVLGKYG-RRPTVRDIVKPLLNLFHSAPGNGLWKRKADAAFRHCTTIKSFFEETLVAIPD 385
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
SVLDSP+ E GR DLFA++ LLPPPY RE+ V+
Sbjct: 386 SVLDSPVVEPTPGRRDLFANMDSLLPPPYTTREEAVI 422
>gi|356537294|ref|XP_003537164.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Glycine max]
Length = 372
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 207/277 (74%), Positives = 245/277 (88%), Gaps = 1/277 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSP+VAG GCFGV LMLDPKFV EA+S+IAANTNVPV+VKCRIGVDDHDSYN+LCD
Sbjct: 97 NCGCPSPRVAGRGCFGVRLMLDPKFVAEAISLIAANTNVPVTVKCRIGVDDHDSYNELCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIYKVSSLSP +HF+IHSRKALL G+SPAENR+IPPLKYEY+Y LLRDFPDL+FT+NGGI
Sbjct: 157 FIYKVSSLSPAKHFVIHSRKALLKGLSPAENRSIPPLKYEYFYGLLRDFPDLSFTINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DEVN AL+ GAH VMVGRAAY NPW+ LGHVDTAIYGA SSGLTRRQV+EKYQ+YGD
Sbjct: 217 ASIDEVNGALKAGAHGVMVGRAAYNNPWHILGHVDTAIYGASSSGLTRRQVLEKYQVYGD 276
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++L YG P +RD++KPLL FFHSEPGNGL+KRKAD+A QTC T+KSF EET+VAIPD
Sbjct: 277 SVLQRYGLG-PSLRDIVKPLLGFFHSEPGNGLWKRKADSAVQTCTTIKSFFEETLVAIPD 335
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
SVLDS + + GR D+FA+++ LPPPY+ RE++V+
Sbjct: 336 SVLDSAVVKPQSGRGDIFANIYSSLPPPYRTREEDVI 372
>gi|297817686|ref|XP_002876726.1| hypothetical protein ARALYDRAFT_486864 [Arabidopsis lyrata subsp.
lyrata]
gi|297322564|gb|EFH52985.1| hypothetical protein ARALYDRAFT_486864 [Arabidopsis lyrata subsp.
lyrata]
Length = 405
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 206/278 (74%), Positives = 246/278 (88%), Gaps = 1/278 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKVAGHGCFGV LML PK VGEAMS IAANTNVPV+VKCRIGVDDHDSY++LCD
Sbjct: 125 NCGCPSPKVAGHGCFGVRLMLKPKLVGEAMSAIAANTNVPVTVKCRIGVDDHDSYDELCD 184
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIYKVS+LSPTRHFI+HSRKALL GISPA+NR IPPLKYEY+YAL+RDFPDL FT+NGGI
Sbjct: 185 FIYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYFYALVRDFPDLRFTINGGI 244
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+V +VNAAL++GAH VMVGRAAY NPW LGHVDTA+YG PS GLTRRQV+E+YQ+YGD
Sbjct: 245 TSVSKVNAALKEGAHGVMVGRAAYNNPWQMLGHVDTAVYGVPSRGLTRRQVLEQYQVYGD 304
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++LGT+GN RP+VRD++KPLL+ FHSE GN L+KR+ADAAF+ C++V S LEE++ AIPD
Sbjct: 305 SVLGTHGNGRPNVRDLVKPLLNLFHSENGNSLWKRRADAAFKECRSVGSLLEESLRAIPD 364
Query: 243 SVLDSPIEEAPR-GREDLFADVHDLLPPPYKAREQEVL 279
VLDSPI +P G ED+FADVH++LPPPY+A + ++
Sbjct: 365 CVLDSPISGSPESGEEDVFADVHNVLPPPYEAAGEGII 402
>gi|217075895|gb|ACJ86307.1| unknown [Medicago truncatula]
Length = 432
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/279 (75%), Positives = 241/279 (86%), Gaps = 1/279 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSP+VAGHG FGVSLMLDPKFV EAMS IAANTNVPVSVKCRIGVDD DSY++LC+
Sbjct: 155 NCGCPSPRVAGHGSFGVSLMLDPKFVAEAMSAIAANTNVPVSVKCRIGVDDRDSYDELCE 214
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VSSLSPT+HFIIHSRKALLNGISPAENR+IPPLKYEY+Y LLRDFPDLTFT+NGGI
Sbjct: 215 FVSTVSSLSPTKHFIIHSRKALLNGISPAENRSIPPLKYEYFYGLLRDFPDLTFTINGGI 274
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+VDEVNAA GAH VM+GRAA+ NPW+ LGHVDTAIYGAPS GLTRRQV+EKY +YGD
Sbjct: 275 TSVDEVNAARDAGAHGVMIGRAAFYNPWHILGHVDTAIYGAPSCGLTRRQVLEKYIVYGD 334
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ LG YG +RP VRD++KPLL+ FHS PGNG +KR ADAAF+ C T+KSF EETI AIPD
Sbjct: 335 SELGKYG-HRPTVRDIVKPLLNLFHSAPGNGQWKRNADAAFRNCTTIKSFFEETIDAIPD 393
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVLYA 281
SVLDSP+ E P GR DLFA++ LLPP Y+ RE+ V+ A
Sbjct: 394 SVLDSPVSEPPLGRTDLFANIDSLLPPRYETREEVVICA 432
>gi|7573334|emb|CAB87804.1| putative protein [Arabidopsis thaliana]
Length = 456
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/332 (63%), Positives = 250/332 (75%), Gaps = 53/332 (15%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPK------------------------FVGEAMSVIAAN 38
+CGCPSPKVAGHGCFGVSLML PK VGEAMS IAAN
Sbjct: 125 NCGCPSPKVAGHGCFGVSLMLKPKVRYFTPPHDFKRYLLFLNFTLSFKLVGEAMSAIAAN 184
Query: 39 TNVPVSVKCRIGVDDHDSYNQLC----------------------------DFIYKVSSL 70
TNVPV+VKCRIGVD+HDSY++LC DFIYKVS+L
Sbjct: 185 TNVPVTVKCRIGVDNHDSYDELCELFLLSVFLKSRMDLPLRSNTAFPLLLGDFIYKVSTL 244
Query: 71 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA 130
SPTRHFI+HSRKALL GISPA+NR IPPLKYEYYYAL+RDFPDL FT+NGGI +V +VNA
Sbjct: 245 SPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSVSKVNA 304
Query: 131 ALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGN 190
AL++GAH VMVGRAAY NPW TLG VDTA+YG PSSGLTRRQV+E+YQ+YGD++LGT+GN
Sbjct: 305 ALKEGAHGVMVGRAAYNNPWQTLGQVDTAVYGVPSSGLTRRQVLEQYQVYGDSVLGTHGN 364
Query: 191 NRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIE 250
RP+VRD++KPLL+ FHSE GN L+KR+ADAAF+ C++V S LEE++ AIPD VLDSPI
Sbjct: 365 GRPNVRDLVKPLLNLFHSENGNSLWKRRADAAFKECRSVGSLLEESLRAIPDCVLDSPIS 424
Query: 251 EAPR-GREDLFADVHDLLPPPYKAREQEVLYA 281
+P G ED+FADVH++LPPPY+A E+ +L A
Sbjct: 425 GSPESGDEDVFADVHNVLPPPYEAGEEIILCA 456
>gi|297795405|ref|XP_002865587.1| nitrogen regulation family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297311422|gb|EFH41846.1| nitrogen regulation family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 388
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 194/277 (70%), Positives = 234/277 (84%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKV+G GCFG LMLDPKFVGEAMSVIA+NTN V+VKCRIGVDDHDSYN+LCD
Sbjct: 98 NCGCPSPKVSGRGCFGALLMLDPKFVGEAMSVIASNTNAAVTVKCRIGVDDHDSYNELCD 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI+ VSSLSPT+HFIIHSRKALL+G+SP++NR IPPLKYE+++ALLRDFPDL FT+NGGI
Sbjct: 158 FIHIVSSLSPTKHFIIHSRKALLSGLSPSDNRRIPPLKYEFFFALLRDFPDLKFTINGGI 217
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
N+V E +AALR GAH VM+GRA Y NPW+TLGHVDT IYG+PSSG+TRRQV+EKYQ+YG+
Sbjct: 218 NSVVEADAALRSGAHGVMLGRAVYYNPWHTLGHVDTVIYGSPSSGITRRQVLEKYQVYGE 277
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++LG YG RP++RD+++PL++ FHSE GNG +KR+ DAA C T+KSFL+E + AIPD
Sbjct: 278 SVLGKYGKGRPNLRDIVRPLINLFHSESGNGQWKRRTDAALLHCTTLKSFLDEVLPAIPD 337
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
VLDS + GREDLFADV LLPPPY + L
Sbjct: 338 FVLDSFAFKEATGREDLFADVRRLLPPPYGKESSKAL 374
>gi|15238854|ref|NP_199608.1| tRNA-dihydrouridine synthase A [Arabidopsis thaliana]
gi|145334771|ref|NP_001078731.1| tRNA-dihydrouridine synthase A [Arabidopsis thaliana]
gi|10177748|dbj|BAB11061.1| unnamed protein product [Arabidopsis thaliana]
gi|18175722|gb|AAL59916.1| unknown protein [Arabidopsis thaliana]
gi|20466015|gb|AAM20229.1| unknown protein [Arabidopsis thaliana]
gi|332008217|gb|AED95600.1| tRNA-dihydrouridine synthase A [Arabidopsis thaliana]
gi|332008218|gb|AED95601.1| tRNA-dihydrouridine synthase A [Arabidopsis thaliana]
Length = 387
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 191/277 (68%), Positives = 234/277 (84%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKV+G GCFG LMLDPKFVGEAMSVIAANTN V+VKCRIGVDDHDSYN+LCD
Sbjct: 98 NCGCPSPKVSGRGCFGALLMLDPKFVGEAMSVIAANTNAAVTVKCRIGVDDHDSYNELCD 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI+ VSSLSPT+HFIIHSRKALL+G+SP++NR IPPLKYE+++ALLRDFPDL FT+NGGI
Sbjct: 158 FIHIVSSLSPTKHFIIHSRKALLSGLSPSDNRRIPPLKYEFFFALLRDFPDLKFTINGGI 217
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
N+V E +AALR GAH VM+GRA Y NPW+ LGHVDT +YG+PSSG+TRRQV+EKY++YG+
Sbjct: 218 NSVVEADAALRSGAHGVMLGRAVYYNPWHILGHVDTVVYGSPSSGITRRQVLEKYKLYGE 277
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++LG YG RP++RD+++PL++ FHSE GNG +KR+ DAA C T++SFL+E + AIPD
Sbjct: 278 SVLGKYGKGRPNLRDIVRPLINLFHSESGNGQWKRRTDAALLHCTTLQSFLDEVLPAIPD 337
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
VLDS + GREDLFADV LLPPPY+ + L
Sbjct: 338 YVLDSSAVKEATGREDLFADVQRLLPPPYEKESFKAL 374
>gi|356512241|ref|XP_003524829.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase A-like
[Glycine max]
Length = 437
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/284 (70%), Positives = 236/284 (83%), Gaps = 9/284 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSPKVAGHGCFGVSLML+PKFV EAMS IAA+TNVPVSVKCRIGVDDHDSYN+LCD
Sbjct: 153 NCGCPSPKVAGHGCFGVSLMLNPKFVAEAMSAIAASTNVPVSVKCRIGVDDHDSYNELCD 212
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIY+VSSLSPT+HFIIHSRKALLNGISPAENR+IPPLKYEY+Y LLRDFPDL FT+NGGI
Sbjct: 213 FIYQVSSLSPTKHFIIHSRKALLNGISPAENRSIPPLKYEYFYGLLRDFPDLRFTINGGI 272
Query: 123 NTVDEVNAALRKGAHHVMVGRA-------AYQNPWYTLGHVDTAIYGAPSSGLTRRQVVE 175
+ VDEV + + ++ A + PW LGHVD AIY PS LTRRQV+E
Sbjct: 273 SRVDEVRCCHXNNSVYXILIFIXIFRNFLALKLPWQILGHVDAAIYDKPSCDLTRRQVLE 332
Query: 176 KYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEE 235
KY +YGD++LG YG +R +RDV+KPLLH FHSEPGNGL+KRKADAAF+ C T++SF EE
Sbjct: 333 KYLVYGDSVLGKYG-HRSTLRDVVKPLLHLFHSEPGNGLWKRKADAAFKNCTTIESFFEE 391
Query: 236 TIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
T+VAIPDSVLDS + E+P GR DLFA++H+LLPPPY+ RE+ ++
Sbjct: 392 TLVAIPDSVLDSLVAESPPGR-DLFANMHNLLPPPYRTREEAII 434
>gi|227202714|dbj|BAH56830.1| AT3G63510 [Arabidopsis thaliana]
Length = 261
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 193/261 (73%), Positives = 231/261 (88%), Gaps = 1/261 (0%)
Query: 22 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81
ML PK VGEAMS IAANTNVPV+VKCRIGVD+HDSY++LCDFIYKVS+LSPTRHFI+HSR
Sbjct: 1 MLKPKLVGEAMSAIAANTNVPVTVKCRIGVDNHDSYDELCDFIYKVSTLSPTRHFIVHSR 60
Query: 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 141
KALL GISPA+NR IPPLKYEYYYAL+RDFPDL FT+NGGI +V +VNAAL++GAH VMV
Sbjct: 61 KALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMV 120
Query: 142 GRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKP 201
GRAAY NPW TLG VDTA+YG PSSGLTRRQV+E+YQ+YGD++LGT+GN RP+VRD++KP
Sbjct: 121 GRAAYNNPWQTLGQVDTAVYGVPSSGLTRRQVLEQYQVYGDSVLGTHGNGRPNVRDLVKP 180
Query: 202 LLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPR-GREDLF 260
LL+ FHSE GN L+KR+ADAAF+ C++V S LEE++ AIPD VLDSPI +P G ED+F
Sbjct: 181 LLNLFHSENGNSLWKRRADAAFKECRSVGSLLEESLRAIPDCVLDSPISGSPESGDEDVF 240
Query: 261 ADVHDLLPPPYKAREQEVLYA 281
ADVH++LPPPY+A E+ +L A
Sbjct: 241 ADVHNVLPPPYEAGEEIILCA 261
>gi|297602354|ref|NP_001052360.2| Os04g0278900 [Oryza sativa Japonica Group]
gi|255675275|dbj|BAF14274.2| Os04g0278900 [Oryza sativa Japonica Group]
Length = 368
Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust.
Identities = 184/271 (67%), Positives = 226/271 (83%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS KVAGHGCFG LM DP+FVG+AMS IAAN NVPVSVKCRIGVDD DSY +LC+
Sbjct: 82 NCGCPSGKVAGHGCFGARLMFDPEFVGDAMSAIAANCNVPVSVKCRIGVDDRDSYEELCE 141
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KV S SPTRHFIIH+RKALL+G+SPAENR +PPLKYEYY+ALLRDFPD+ FTLNGGI
Sbjct: 142 FVDKVVSKSPTRHFIIHARKALLSGLSPAENRNVPPLKYEYYFALLRDFPDVQFTLNGGI 201
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+V A++R+GAH VMVGRAAY NPW LGHVD+ +YG P+ +RRQ++E YQ+YGD
Sbjct: 202 TTIDQVTASIRQGAHRVMVGRAAYNNPWNMLGHVDSEVYGMPTRRSSRRQILESYQVYGD 261
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+I+G YG +RP+VR ++KPLL+ FHSEPGNGL+KRKAD+ + CKT++SFLEET+ AIP+
Sbjct: 262 SIMGQYGPSRPNVRQLVKPLLNLFHSEPGNGLWKRKADSTLRHCKTLESFLEETLDAIPN 321
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKA 273
SVLD+PI + E FAD+ LLPP Y +
Sbjct: 322 SVLDAPIGKEAYIEEGHFADMDSLLPPRYSS 352
>gi|116309197|emb|CAH66291.1| OSIGBa0113C11.1 [Oryza sativa Indica Group]
Length = 368
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 184/271 (67%), Positives = 226/271 (83%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS KVAGHGCFG LM DP+FVG+AMS IAAN NVPVSVKCRIGVDD DSY +LC+
Sbjct: 82 NCGCPSGKVAGHGCFGARLMFDPEFVGDAMSAIAANCNVPVSVKCRIGVDDRDSYEELCE 141
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KV S SPTRHFIIH+RKALL+G+SPAENR +PPLKYEYY+ALLRDFPD+ FTLNGGI
Sbjct: 142 FVDKVVSKSPTRHFIIHARKALLSGLSPAENRKVPPLKYEYYFALLRDFPDVQFTLNGGI 201
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+V A++R+GAH VMVGRAAY NPW LGHVD+ +YG P+ +RRQ++E YQ+YGD
Sbjct: 202 TTIDQVTASIRQGAHRVMVGRAAYNNPWNMLGHVDSEVYGMPTRRSSRRQILESYQVYGD 261
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+I+G YG +RP+VR ++KPLL+ FHSEPGNGL+KRKAD+ + CKT++SFLEET+ AIP+
Sbjct: 262 SIMGQYGPSRPNVRQLVKPLLNLFHSEPGNGLWKRKADSTLRHCKTLESFLEETLDAIPN 321
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKA 273
SVLD+PI + E FAD+ LLPP Y +
Sbjct: 322 SVLDAPIGKEAYIEEGHFADMDSLLPPRYSS 352
>gi|125547565|gb|EAY93387.1| hypothetical protein OsI_15183 [Oryza sativa Indica Group]
Length = 437
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 183/271 (67%), Positives = 226/271 (83%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS KVAGHGCFG LM DP+FVG+AMS IAAN NVPVS+KCRIGVDD DSY +LC+
Sbjct: 151 NCGCPSGKVAGHGCFGARLMFDPEFVGDAMSAIAANCNVPVSIKCRIGVDDRDSYEELCE 210
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KV S SPTRHFIIH+RKALL+G+SPAENR +PPLKYEYY+ALLRDFPD+ FTLNGGI
Sbjct: 211 FVDKVVSKSPTRHFIIHARKALLSGLSPAENRKVPPLKYEYYFALLRDFPDVQFTLNGGI 270
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+V A++R+GAH VMVGRAAY NPW LGHVD+ +YG P+ +RRQ++E YQ+YGD
Sbjct: 271 TTIDQVTASIRQGAHRVMVGRAAYNNPWNMLGHVDSEVYGMPTRRSSRRQILESYQVYGD 330
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+I+G YG +RP+VR ++KPLL+ FHSEPGNGL+KRKAD+ + CKT++SFLEET+ AIP+
Sbjct: 331 SIMGQYGPSRPNVRQLVKPLLNLFHSEPGNGLWKRKADSTLRHCKTLESFLEETLDAIPN 390
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKA 273
SVLD+PI + E FAD+ LLPP Y +
Sbjct: 391 SVLDAPIGKEAYIEEGHFADMDSLLPPRYSS 421
>gi|226493267|ref|NP_001141027.1| uncharacterized protein LOC100273106 [Zea mays]
gi|194702264|gb|ACF85216.1| unknown [Zea mays]
gi|195645254|gb|ACG42095.1| tRNA-dihydrouridine synthase A [Zea mays]
gi|414587841|tpg|DAA38412.1| TPA: tRNA-dihydrouridine synthase A [Zea mays]
Length = 425
Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/279 (66%), Positives = 222/279 (79%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS KVAGHGCFG LM DP+FVG+AMS IAAN +VPVSVKCRIGVDD DSY +LC+
Sbjct: 144 NCGCPSGKVAGHGCFGARLMFDPEFVGDAMSTIAANCDVPVSVKCRIGVDDRDSYEELCE 203
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KV S SPTRHFIIH+RKALL+G+SPAENR IPPLKYEYY+ALLRDFP++ FTLNGGI
Sbjct: 204 FVDKVISKSPTRHFIIHARKALLSGLSPAENRKIPPLKYEYYFALLRDFPEIKFTLNGGI 263
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
V +V+A++R+GAH VMVGRAAY NPW LGHVD IYG + ++RRQ++E YQ YGD
Sbjct: 264 TNVSQVSASMRQGAHGVMVGRAAYNNPWNMLGHVDGEIYGKQTRYISRRQILENYQAYGD 323
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+I+ YG +RP+VR ++KPLL+ FHSEPGN L+KRKAD+A + CKTVK+FLEET+ AI D
Sbjct: 324 SIIDQYGPSRPNVRQLVKPLLNLFHSEPGNSLWKRKADSALRHCKTVKTFLEETLDAISD 383
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVLYA 281
SVLD P+ P E+ FA V LLPP Y E L A
Sbjct: 384 SVLDKPVNREPSSDEEYFASVDSLLPPKYTTPMHERLVA 422
>gi|357167249|ref|XP_003581072.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Brachypodium
distachyon]
Length = 436
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/269 (67%), Positives = 218/269 (81%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS KVAGHGCFG LM DP+FVG+AMS IAAN +VPVSVKCRIGVDD DSY +LC+
Sbjct: 150 NCGCPSGKVAGHGCFGAQLMYDPEFVGDAMSAIAANCDVPVSVKCRIGVDDRDSYEELCE 209
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K+ S SPTRHFIIH+RKALL+G+SPAENRTIPPLKYEYYYALLRDFP++ FTLNGGI
Sbjct: 210 FVDKIVSKSPTRHFIIHARKALLSGLSPAENRTIPPLKYEYYYALLRDFPEVHFTLNGGI 269
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ +V+ ++R+GAH MVGRAAY NPW LGHVD+ IYG P+S +RRQ++E YQIYGD
Sbjct: 270 TTIAQVSESIRQGAHRAMVGRAAYNNPWNMLGHVDSEIYGMPTSCSSRRQILESYQIYGD 329
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+I+G YG RP+VR ++KPLLH FHSEPGN L+KRKAD+ + CKT++ FL ET+ AIPD
Sbjct: 330 SIIGQYGITRPNVRQLVKPLLHLFHSEPGNSLWKRKADSTLRHCKTLEQFLNETLDAIPD 389
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPY 271
SVLD+PI E F+ V LPP Y
Sbjct: 390 SVLDAPIFREASMEEGYFSHVDSSLPPRY 418
>gi|242072588|ref|XP_002446230.1| hypothetical protein SORBIDRAFT_06g006720 [Sorghum bicolor]
gi|241937413|gb|EES10558.1| hypothetical protein SORBIDRAFT_06g006720 [Sorghum bicolor]
Length = 368
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/269 (66%), Positives = 219/269 (81%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS KVAGHGCFG LM +P+FVG+AMS IAAN +VPVSVKCRIGVDD DSY +LC+
Sbjct: 82 NCGCPSGKVAGHGCFGARLMFEPEFVGDAMSTIAANCDVPVSVKCRIGVDDRDSYEELCE 141
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KV S SPTRHFIIH+RKALL+G+SPAENR +PPLKYEYY+ALLRDFP + FT+NGGI
Sbjct: 142 FVDKVVSKSPTRHFIIHARKALLSGLSPAENRKVPPLKYEYYFALLRDFPGIKFTVNGGI 201
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
V +V+A++R+GAH VMVGRAAY NPW LGHVD IYG + ++RRQ++E YQ YGD
Sbjct: 202 TNVGQVSASIRQGAHGVMVGRAAYNNPWNMLGHVDGEIYGKQTRCISRRQILESYQAYGD 261
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+I+ YG +RP+VR ++KPLL+ FHSEPGN L+KRKAD+A + CKTVK+FLEET+ AIPD
Sbjct: 262 SIIDQYGPSRPNVRQLVKPLLNLFHSEPGNSLWKRKADSALRHCKTVKTFLEETLDAIPD 321
Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPY 271
SVLD P+ P E FA++ LLPP Y
Sbjct: 322 SVLDKPVNREPCSDEGYFANIDSLLPPKY 350
>gi|414587842|tpg|DAA38413.1| TPA: hypothetical protein ZEAMMB73_072134 [Zea mays]
Length = 263
Score = 362 bits (930), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 170/260 (65%), Positives = 206/260 (79%)
Query: 22 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81
M DP+FVG+AMS IAAN +VPVSVKCRIGVDD DSY +LC+F+ KV S SPTRHFIIH+R
Sbjct: 1 MFDPEFVGDAMSTIAANCDVPVSVKCRIGVDDRDSYEELCEFVDKVISKSPTRHFIIHAR 60
Query: 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 141
KALL+G+SPAENR IPPLKYEYY+ALLRDFP++ FTLNGGI V +V+A++R+GAH VMV
Sbjct: 61 KALLSGLSPAENRKIPPLKYEYYFALLRDFPEIKFTLNGGITNVSQVSASMRQGAHGVMV 120
Query: 142 GRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKP 201
GRAAY NPW LGHVD IYG + ++RRQ++E YQ YGD+I+ YG +RP+VR ++KP
Sbjct: 121 GRAAYNNPWNMLGHVDGEIYGKQTRYISRRQILENYQAYGDSIIDQYGPSRPNVRQLVKP 180
Query: 202 LLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFA 261
LL+ FHSEPGN L+KRKAD+A + CKTVK+FLEET+ AI DSVLD P+ P E+ FA
Sbjct: 181 LLNLFHSEPGNSLWKRKADSALRHCKTVKTFLEETLDAISDSVLDKPVNREPSSDEEYFA 240
Query: 262 DVHDLLPPPYKAREQEVLYA 281
V LLPP Y E L A
Sbjct: 241 SVDSLLPPKYTTPMHERLVA 260
>gi|357457959|ref|XP_003599260.1| tRNA-dihydrouridine synthase A [Medicago truncatula]
gi|355488308|gb|AES69511.1| tRNA-dihydrouridine synthase A [Medicago truncatula]
Length = 294
Score = 336 bits (862), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 156/198 (78%), Positives = 177/198 (89%), Gaps = 1/198 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSP+VAG GCFG LML+PKFV EA+SVIAANTNVPVSVKCRIGVDDHDSYN+LCD
Sbjct: 97 NCGCPSPRVAGRGCFGARLMLEPKFVAEAVSVIAANTNVPVSVKCRIGVDDHDSYNELCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIYKVSSLSP RHFIIHSRKALL G+SPAENR+IPPLKYEY+Y LLRDFPDLTFT+NGGI
Sbjct: 157 FIYKVSSLSPARHFIIHSRKALLKGLSPAENRSIPPLKYEYFYGLLRDFPDLTFTINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+DE+NAAL+ GAH VM+GRAAY NPW+ LG+VD AIYG PS GLTRRQV+EKYQ+YGD
Sbjct: 217 TCIDEINAALKTGAHGVMLGRAAYHNPWHILGNVDRAIYGVPSIGLTRRQVLEKYQVYGD 276
Query: 183 AILGTYGNNRPHVRDVMK 200
++L YG RP VRD++K
Sbjct: 277 SVLLQYG-FRPTVRDIVK 293
>gi|302811002|ref|XP_002987191.1| hypothetical protein SELMODRAFT_125523 [Selaginella moellendorffii]
gi|300145088|gb|EFJ11767.1| hypothetical protein SELMODRAFT_125523 [Selaginella moellendorffii]
Length = 363
Score = 310 bits (793), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 140/248 (56%), Positives = 183/248 (73%), Gaps = 6/248 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS KVAGHGCFG LML P+ VGEAM I ++ PV+VKCRIGVDD DSY+QLC+
Sbjct: 90 NCGCPSSKVAGHGCFGARLMLSPRLVGEAMQAIGEESSAPVTVKCRIGVDDSDSYDQLCN 149
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VSSLSPT+HFIIH+RKALL G+SPA+NR PPLKYEY AL+RDFPDL FTLNGGI
Sbjct: 150 FVSTVSSLSPTQHFIIHARKALLEGLSPAQNRVAPPLKYEYVLALMRDFPDLQFTLNGGI 209
Query: 123 NTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYG 181
TV++VN + KG + VM+GRAAY PW TL D+ IYG P +TRRQV+ +Y+ Y
Sbjct: 210 TTVEQVNYLISDKGVNGVMLGRAAYNTPWCTLARADSCIYGMPERRITRRQVLREYEEYA 269
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
++++G YGNN+P +R ++KP+ + FH E G+ +++ D + LE+T+ +P
Sbjct: 270 ESVIGKYGNNKPGIRVLVKPVANLFHGEKGSSRWRQAIDE-----HSFSELLEKTMAVLP 324
Query: 242 DSVLDSPI 249
DSVLD+P+
Sbjct: 325 DSVLDTPV 332
>gi|168068461|ref|XP_001786082.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662169|gb|EDQ49105.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 402
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 142/247 (57%), Positives = 182/247 (73%), Gaps = 1/247 (0%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLC 61
+CGCPS KVAGHGCFG SLML+ V E M+ IA + PV+VKCRIGVDD DSY+ L
Sbjct: 112 NCGCPSEKVAGHGCFGASLMLESGLVAECMAAIAEGSPGTPVTVKCRIGVDDFDSYDLLH 171
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
F+ VSS SPT+HF++H+RKA+L G+SPA NRTIPPLKYEY YAL+RDFP+L FTLNGG
Sbjct: 172 KFVTTVSSSSPTQHFVVHARKAILKGLSPAANRTIPPLKYEYVYALIRDFPNLKFTLNGG 231
Query: 122 INTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYG 181
+ +VN AL++G VM+GRAAY PW TLG+VD ++YG + LTRRQ++EKY Y
Sbjct: 232 VVNTHQVNEALQEGVFGVMLGRAAYNYPWATLGNVDNSVYGDSTPRLTRRQILEKYVEYA 291
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
DA L YG +P VR ++KPLL FH+E G G+++R D + + +TV + L+ET+ +P
Sbjct: 292 DAELHKYGPKKPSVRHLVKPLLGIFHAESGAGVWRRAVDNSLRNAETVGALLKETLCVLP 351
Query: 242 DSVLDSP 248
D VLDSP
Sbjct: 352 DFVLDSP 358
>gi|302789157|ref|XP_002976347.1| hypothetical protein SELMODRAFT_104800 [Selaginella moellendorffii]
gi|300155977|gb|EFJ22607.1| hypothetical protein SELMODRAFT_104800 [Selaginella moellendorffii]
Length = 358
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 136/234 (58%), Positives = 174/234 (74%), Gaps = 4/234 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS KVAGHGCFG LML P+ VGEAM IA ++ PV+VKCRIGVDD DSY+QLC+
Sbjct: 90 NCGCPSSKVAGHGCFGARLMLSPRLVGEAMQAIAEESSAPVTVKCRIGVDDSDSYDQLCN 149
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VSSLSPTRHFIIH+RKALL G+SPA+NR PPLKYEY AL+RDFPDL FTLNGGI
Sbjct: 150 FVSTVSSLSPTRHFIIHARKALLEGLSPAQNRVAPPLKYEYVLALMRDFPDLQFTLNGGI 209
Query: 123 NTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYG 181
TV++VN + KG + VM+GRAAY PW TL D+ IYG P +TRRQV+ +Y+ Y
Sbjct: 210 TTVEQVNYLITDKGVNGVMLGRAAYNTPWCTLARADSCIYGMPERRITRRQVLREYEEYA 269
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCK---TVKSF 232
++++G YGNN+P +R ++KP+ + FH E G+ +++ D + K T+ SF
Sbjct: 270 ESVIGKYGNNKPGIRVLVKPVANLFHGEKGSSRWRQAIDEHVRHAKASNTLSSF 323
>gi|167998448|ref|XP_001751930.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697028|gb|EDQ83365.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 373
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 136/271 (50%), Positives = 185/271 (68%), Gaps = 8/271 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLC 61
+CGCPS V G FG +LML+P+ VG+ ++ IA + PVSVKCRIGVDD DSY+ L
Sbjct: 101 NCGCPSDNVTGRS-FGAALMLEPELVGQCVTAIAKGSPGTPVSVKCRIGVDDFDSYDFLH 159
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
+FI VSS SPT+HFIIH+RKA+L G+SP ENR IPPLKY+Y +AL+RDFP+L FTLNGG
Sbjct: 160 NFIRIVSSTSPTKHFIIHARKAVLKGLSPDENRRIPPLKYDYVFALMRDFPNLKFTLNGG 219
Query: 122 INTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYG 181
+ + +VN AL +G VM+GR AY +PW L +VD +YG + LTRRQ++EKY +YG
Sbjct: 220 VVGIHQVNEALNRGVFGVMLGRTAYNSPWSVLANVDRVVYGDMTPVLTRRQILEKYVVYG 279
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
DA L YG +P +R + +PL F+ E G GL++R D ++ +T+ + L +T+ IP
Sbjct: 280 DAELHRYGYKKPGIRQIAQPLSGLFYREKGVGLWRRALDEYIRSSQTLHALLRDTLRVIP 339
Query: 242 DSVLDSPIEEAPRGRED--LFADVHDLLPPP 270
DSVLD ++P+ E L D+ L+ P
Sbjct: 340 DSVLD----DSPKLEESAVLLIDISFLVERP 366
>gi|307106508|gb|EFN54753.1| hypothetical protein CHLNCDRAFT_23819 [Chlorella variabilis]
Length = 374
Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 117/252 (46%), Positives = 165/252 (65%), Gaps = 6/252 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +VAG GCFG ++ML P+ V + + +P++VKCR+GVD DSY QL +
Sbjct: 80 NCGCPSDRVAGAGCFGAAMMLRPQLVADCCKAMREAVLMPITVKCRLGVDSFDSYPQLVN 139
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS S HF+IH+RK LL G++P +NRT+PPL+YE+ +AL RDFP L F+LNGG+
Sbjct: 140 FVEVVSKGSGVSHFVIHARKCLLKGLNPHQNRTVPPLRYEWVWALKRDFPHLEFSLNGGV 199
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLT-RRQVVEKYQIYG 181
T++EV +AL G VMVGRAAY PW LG D AI+GA ++ T RRQV+ Y +
Sbjct: 200 LTLEEVASALALGIMGVMVGRAAYNMPWDALGDADRAIFGAEANAATSRRQVLHDYAAWA 259
Query: 182 DAILGTY-----GNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEET 236
D+++G + G+ P+VR ++KPLL FH EP ++ DAA +T +TV L+ T
Sbjct: 260 DSMIGHWRVEEDGHKSPNVRMLVKPLLGMFHGEPRAKKWRAAVDAALKTAETVGEVLDAT 319
Query: 237 IVAIPDSVLDSP 248
+ + LD+P
Sbjct: 320 LPVLKPESLDAP 331
>gi|32489914|emb|CAE05107.1| OSJNBa0009K15.27 [Oryza sativa Japonica Group]
gi|39546255|emb|CAD39832.3| OSJNBa0079F16.3 [Oryza sativa Japonica Group]
Length = 481
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 109/175 (62%), Positives = 141/175 (80%)
Query: 99 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 158
L YEYY+ALLRDFPD+ FTLNGGI T+D+V A++R+GAH VMVGRAAY NPW LGHVD+
Sbjct: 291 LGYEYYFALLRDFPDVQFTLNGGITTIDQVTASIRQGAHRVMVGRAAYNNPWNMLGHVDS 350
Query: 159 AIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK 218
+YG P+ +RRQ++E YQ+YGD+I+G YG +RP+VR ++KPLL+ FHSEPGNGL+KRK
Sbjct: 351 EVYGMPTRRSSRRQILESYQVYGDSIMGQYGPSRPNVRQLVKPLLNLFHSEPGNGLWKRK 410
Query: 219 ADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPYKA 273
AD+ + CKT++SFLEET+ AIP+SVLD+PI + E FAD+ LLPP Y +
Sbjct: 411 ADSTLRHCKTLESFLEETLDAIPNSVLDAPIGKEAYIEEGHFADMDSLLPPRYSS 465
>gi|384248509|gb|EIE21993.1| Dus-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 433
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 178/290 (61%), Gaps = 18/290 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI-AANTNVPVSVKCRIGVDDHDSYNQLC 61
+CGCPS +VAG GCFG SLML P V + + A + V+VKCR+GVDD DSY LC
Sbjct: 146 NCGCPSDRVAGAGCFGASLMLQPANVATCCAAMRQALGSAAVTVKCRLGVDDVDSYEALC 205
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
+FI V S HFI+H+RK LLNG+SP ENRTIPPL++E+ +AL RDFP L F+LNGG
Sbjct: 206 NFIRVVHEGSGVSHFIMHARKCLLNGLSPHENRTIPPLRHEWVWALNRDFPHLEFSLNGG 265
Query: 122 INTVDEVNAALRKGA-----HHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLT-RRQVVE 175
+++ + AAL+ H VM+GRAAY +PW L D A++GA ++ T RR+V+
Sbjct: 266 LDSCHQAAAALQHSVDGASIHGVMIGRAAYNHPWACLADADIAVFGAETNAATSRREVLA 325
Query: 176 KYQIYGDAILGTY-----GNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAA-FQTCKTV 229
KY Y DA++G + G+ P+VR V +PLL+ F EP ++R D A + TV
Sbjct: 326 KYVEYADAVVGRFGMKPDGSKTPNVRTVARPLLNLFVGEPSGRKWRRMLDVALLKKPATV 385
Query: 230 KSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
+EE I +PD VLD+P + R +F+ PPP + + + V+
Sbjct: 386 AEVVEEAIKCVPDHVLDAPPK---RQMPPVFSIGQ--FPPPNRLKSETVM 430
>gi|224028635|gb|ACN33393.1| unknown [Zea mays]
Length = 296
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 109/146 (74%), Positives = 127/146 (86%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS KVAGHGCFG LM DP+FVG+AMS IAAN +VPVSVKCRIGVDD DSY +LC+
Sbjct: 144 NCGCPSGKVAGHGCFGARLMFDPEFVGDAMSTIAANCDVPVSVKCRIGVDDRDSYEELCE 203
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KV S SPTRHFIIH+RKALL+G+SPAENR IPPLKYEYY+ALLRDFP++ FTLNGGI
Sbjct: 204 FVDKVISKSPTRHFIIHARKALLSGLSPAENRKIPPLKYEYYFALLRDFPEIKFTLNGGI 263
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQN 148
V +V+A++R+GAH VMVGRAAY
Sbjct: 264 TNVSQVSASMRQGAHGVMVGRAAYNK 289
>gi|145350035|ref|XP_001419429.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579660|gb|ABO97722.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 355
Score = 236 bits (602), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 164/263 (62%), Gaps = 19/263 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCD 62
GCPSPKVAG GCFG +LM +P V E ++ +A N PVSVKCRIGVDD DSY+ LCD
Sbjct: 93 GCPSPKVAGKGCFGAALMAEPGLVAECLAAMAENAPEGTPVSVKCRIGVDDVDSYDDLCD 152
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
++ ++ + S TR F +H+RKALL G+SPAENRT+PPLK+E+ YAL RDFP+ F LNGG+
Sbjct: 153 YVERIVAGSSTRRFYVHARKALLAGLSPAENRTVPPLKHEWAYALARDFPECEFHLNGGL 212
Query: 123 NTVDEVNAALRKGAHH------VMVGRAAYQNPWYTLGHVDTAIYGAPSS-GLTRRQVVE 175
T+++V L++G M+GR A+ +PW L DT ++G S+ +RR +
Sbjct: 213 KTLNDVKNVLKRGPEDGGPIVGAMIGRQAHADPWGLLSAADTTLFGEASNPSASRRDFLN 272
Query: 176 KYQIYGDAILGTYGNNR-----PHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCK--- 227
KY +Y D +G YG + P VR +M P+ + FH N ++R + Q
Sbjct: 273 KYAVYADETIGRYGTAKDGYRIPSVRHMMHPIQNLFHGCANNKAWRRLVEEDLQKRSKHP 332
Query: 228 --TVKSFLEETIVAIPDSVLDSP 248
TV+S L+ T++AI D LD+P
Sbjct: 333 DTTVRSVLDATLIAISDEDLDAP 355
>gi|308807222|ref|XP_003080922.1| nitrogen regulation family protein (ISS) [Ostreococcus tauri]
gi|116059383|emb|CAL55090.1| nitrogen regulation family protein (ISS) [Ostreococcus tauri]
Length = 490
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 162/263 (61%), Gaps = 19/263 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN--TNVPVSVKCRIGVDDHDSYNQLCD 62
GCPSPKVAG GCFG +LM +P+ V E + + N + PVS+KCRIGVD+ DSY+ LC+
Sbjct: 193 GCPSPKVAGKGCFGAALMTEPRLVAECLQAMNENAPSGTPVSIKCRIGVDECDSYDALCE 252
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
++ + S TR F +H+RKALLNG+SPAENR++PPLK+E+ YAL RDFP+ F LNGG+
Sbjct: 253 YVDTIVRASATRRFYVHARKALLNGLSPAENRSVPPLKHEWAYALARDFPECEFHLNGGL 312
Query: 123 NTVDEVNAALRKGAH------HVMVGRAAYQNPWYTLGHVDTAIYGAPSS-GLTRRQVVE 175
T+ +V A+ +G VM+GR A+ +PW L DT I+G ++ +RR +E
Sbjct: 313 KTLKDVENAIHRGPEGGGPIAGVMIGRQAHADPWGLLSAADTTIFGESTNPCASRRDFLE 372
Query: 176 KYQIYGDAILGTYGNNR-----PHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCK--- 227
KY Y D +G YG + P VR +M P+ + FH N +++R D Q
Sbjct: 373 KYVEYADDTIGRYGTAKDGYRIPSVRHMMHPIQNLFHGCANNKMWRRLVDEELQKRSKKP 432
Query: 228 --TVKSFLEETIVAIPDSVLDSP 248
TV+S LE T+ I D LD+P
Sbjct: 433 DTTVRSILEATLGVIEDEDLDAP 455
>gi|298708539|emb|CBJ49172.1| FAD binding / catalytic/ tRNA dihydrouridine synthase [Ectocarpus
siliculosus]
Length = 469
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/258 (43%), Positives = 160/258 (62%), Gaps = 4/258 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI--AANTNVPVSVKCRIGVDDHDSYNQL 60
+CGCPS KVAG G FG +LM P V + + A + P++VKCRIGVD+ DSY QL
Sbjct: 169 NCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQL 228
Query: 61 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 120
F+ +VS + HFI+H+RKA+L G+SPA+NR IPPLKY++ Y L++DFPD+ FTLNG
Sbjct: 229 AAFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFVYRLVKDFPDVDFTLNG 288
Query: 121 GINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
G+NT +E + L +GAH VMVGR+ NPWY D+ ++GA GLTRR+V+E+Y Y
Sbjct: 289 GVNTYEEAVSCLEQGAHGVMVGRSWSSNPWY-WSQADSMLFGAKDPGLTRREVLERYAEY 347
Query: 181 GDAILGTYGNNRPHV-RDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVA 239
G+ G R + KP+ H FH E G F+ + + K+ ++++++A
Sbjct: 348 GERQEKACGEKWLACRRRLAKPIWHMFHGEKGGKKFRVALEGMLREDKSFGEIVQKSLLA 407
Query: 240 IPDSVLDSPIEEAPRGRE 257
+P +D E R R+
Sbjct: 408 MPQDQVDWLPGENWRARQ 425
>gi|255082067|ref|XP_002508252.1| predicted protein [Micromonas sp. RCC299]
gi|226523528|gb|ACO69510.1| predicted protein [Micromonas sp. RCC299]
Length = 401
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/272 (43%), Positives = 166/272 (61%), Gaps = 26/272 (9%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLC 61
+CGCPSPKVAG G FG +LML+P+ V + ++ + N+ PV+VKCRIGVDDHDSY+ LC
Sbjct: 94 NCGCPSPKVAGKGAFGAALMLEPELVRDVVAAMRENSGGAPVTVKCRIGVDDHDSYDDLC 153
Query: 62 DFIYKVS-SLSPTRH-----FIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT 115
F+ V+ ++ PTR F IH+RKALL G+SPAENRT+PPL+YE+ YAL RDFP++
Sbjct: 154 RFVETVACAMVPTRTDGRPLFAIHARKALLAGLSPAENRTVPPLRYEWAYALARDFPEVA 213
Query: 116 FTLNGGINTVDEVNAALR------KGAHHV--MVGRAAYQNPWYTLGHVDTAIYGAPSSG 167
F +NGGI+T++E R G V M+GRA + +PW L D ++GA S+
Sbjct: 214 FVVNGGIDTLEEAAEVARGVGVPTGGGRLVGTMIGRAVHADPWGVLSDADVRVFGAESNP 273
Query: 168 LT-RRQVVEKYQIYGDAILGTYGNNR-----PHVRDVMKPLLHFFHSEPGNGLFKRKADA 221
T RR ++ +Y Y DA G +G + P R +M PL + F EP +++R+ D
Sbjct: 274 RTSRRDLLNEYVKYCDATRGRFGTTKDGYSVPSTRHLMHPLQNLFLGEPNAKVWRRRVDE 333
Query: 222 AFQTCK-----TVKSFLEETIVAIPDSVLDSP 248
A + TV LE T+ + D LD+P
Sbjct: 334 ALKEDARNPDVTVGDILERTLGVLSDETLDAP 365
>gi|303279296|ref|XP_003058941.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460101|gb|EEH57396.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 376
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 120/282 (42%), Positives = 164/282 (58%), Gaps = 38/282 (13%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLC 61
+CGCPSPKVAG G FG +LML+P+ V + ++ +AAN+ PV+VKCRIGVDD DSY+ LC
Sbjct: 95 NCGCPSPKVAGKGNFGAALMLEPELVADCVAAMAANSGGAPVTVKCRIGVDDVDSYDALC 154
Query: 62 DFIYKVSSLSPTRH-------FIIHSRKALLN-----------GISPAENRTIPPLKYEY 103
F+ V++ P R F IH+RKALL G+SPAENRT+PPL++E+
Sbjct: 155 AFVETVAARMPPRRGEDARPLFAIHARKALLRRVLYTGSHTTAGLSPAENRTVPPLRHEW 214
Query: 104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV--------MVGRAAYQNPWYTLGH 155
+AL RDFPD+ F +NGGINT++E A R V M+GR A+ +PW L
Sbjct: 215 VHALARDFPDVAFAINGGINTLEEAVAIARGEGTPVGGGRLVGTMIGRRAHADPWGLLAR 274
Query: 156 VDTAIYGAPSS-GLTRRQVVEKYQIYGDAILGTYGNNR-----PHVRDVMKPLLHFFHSE 209
DTA++G S ++RR ++E Y Y DA YG + P +R +M PL + F E
Sbjct: 275 ADTAVFGEASDPCVSRRALLETYAAYADATWARYGTTKDGYAVPSIRHLMHPLQNLFLGE 334
Query: 210 PGNGLFKRKADA-----AFQTCKTVKSFLEETIVAIPDSVLD 246
P ++R+ D A + TV LEET+ + D LD
Sbjct: 335 PNAKRWRREVDEVLKRDARRATTTVTGVLEETLRVLSDETLD 376
>gi|412993714|emb|CCO14225.1| tRNA-dihydrouridine synthase A [Bathycoccus prasinos]
Length = 571
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/268 (42%), Positives = 156/268 (58%), Gaps = 22/268 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLC 61
+CGCPS KVAG GCFG +LM DP V E + +A N + +P+SVKCRIGVD +DSY++L
Sbjct: 253 NCGCPSEKVAGKGCFGATLMRDPDLVAECCAAMAKNADGIPISVKCRIGVDGNDSYDELY 312
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
F+ ++S SP R F +H RKALLNGISP++NR+IPPL++E+ YAL RDFP+ F LNGG
Sbjct: 313 RFVETIASKSPVRRFHVHCRKALLNGISPSQNRSIPPLRHEWVYALARDFPECEFFLNGG 372
Query: 122 INTVDEVNAALR---------KGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGL-TRR 171
+ T++EV LR VM+GR A+ +PW L D ++G + +RR
Sbjct: 373 VKTLEEVKTQLRCQPTDKATANTIKGVMIGRQAHADPWGLLSRADVELFGESENPCKSRR 432
Query: 172 QVVEKYQIYGDAILGTYGNNR-----PHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTC 226
++ KY Y DA G G + P R M + + F ++KR D Q
Sbjct: 433 DLLAKYAKYCDATQGKNGTMKDGSPVPAPRHFMHSIQNIFAGCTNAKIWKRLVDDQLQGS 492
Query: 227 K------TVKSFLEETIVAIPDSVLDSP 248
+ TV +E T+ IPD VLD+P
Sbjct: 493 RKKEPNLTVTEIMERTLGCIPDEVLDAP 520
>gi|422292933|gb|EKU20234.1| hypothetical protein NGA_0331800 [Nannochloropsis gaditana CCMP526]
Length = 437
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/252 (42%), Positives = 155/252 (61%), Gaps = 10/252 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQL 60
+CGCPS +V+G GCFG +LM +P+ V E + ++ + +PV+VKCRIGVDD DSY QL
Sbjct: 176 NCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQL 235
Query: 61 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 120
F+ VS SP RHF++H+RKA+L G+SP +NR +PPLKY + Y L R+FP L FTLNG
Sbjct: 236 ARFVETVSGASPVRHFLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNG 295
Query: 121 GINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSS--GLTRRQVVEKYQ 178
G+ + ++V LR+G H VM+GRA P+Y VD ++G+ GLTRR+V+++Y
Sbjct: 296 GVLSYEDVAEHLREGVHGVMIGRAVVARPFY-WSDVDARVFGSADGNPGLTRREVLDRYG 354
Query: 179 IYGDAILGTYGNNRPHVRDVM-KPLLHFFHSEPGNGLFKRKADAA-FQTCKTVKSFLEET 236
Y G P +R ++ KP+ + F EP F+ D A + V+ LE
Sbjct: 355 AYAQEEEARGG---PRMRRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERA 411
Query: 237 IVAIPDSVLDSP 248
+P ++L+ P
Sbjct: 412 TAVMPAALLEVP 423
>gi|452820247|gb|EME27292.1| tRNA-dihydrouridine synthase A [Galdieria sulphuraria]
Length = 406
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 107/264 (40%), Positives = 152/264 (57%), Gaps = 9/264 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS KV+ GCFG LM P+ V S +A P++VKCRIGVD HDSY L +
Sbjct: 145 NCGCPSDKVSSQGCFGAILMKQPEKVARITSRVAETVGKPMTVKCRIGVDHHDSYEFLSN 204
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI+ VS+ HFIIH+R A L+G+SP ENR+ PP+KYEY Y L +DFP L FTLNG +
Sbjct: 205 FIHVVSTSGHVNHFIIHARSAWLSGLSPKENRSKPPIKYEYVYRLTKDFPHLKFTLNGQV 264
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+T+ +V L KG VM+GRA + PW +L VD IY S+ + R+ VV+KY +
Sbjct: 265 STLSDVVMHLSKGVEGVMLGRAVMERPWNSLRLVDCIIYNDFSTLIRRKYVVQKYL---E 321
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
I G+ ++ ++KP+L F E +F+ + Q + + + +P
Sbjct: 322 HIAQYEGHASRYL--LVKPVLQLFAGEMNCRIFRARCGECLQQGHSASDSIRYALNILPQ 379
Query: 243 SVLDSPIEEAPRGREDL-FADVHD 265
SVL+ +E+ E L F D+ +
Sbjct: 380 SVLE---QESWNSEELLAFKDIQE 400
>gi|325182221|emb|CCA16675.1| tRNAdihydrouridine synthase putative [Albugo laibachii Nc14]
Length = 563
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/262 (40%), Positives = 160/262 (61%), Gaps = 20/262 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS-VIAANTNV--PVSVKCRIGVDDHDSYNQ 59
+CGCPSPKV+ CFG LML P+ V + + +I AN+++ ++VKCRIGVDD DSY +
Sbjct: 299 NCGCPSPKVSKQ-CFGAQLMLQPERVRDICAGMIGANSSMDPEITVKCRIGVDDCDSYEE 357
Query: 60 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 119
L FI VS+ S HFI+H+RK L+G++P ENRTIP L Y++ Y L DFP+L FTLN
Sbjct: 358 LKRFISVVSA-SGVEHFIVHARKCWLSGLNPHENRTIPTLNYDFVYQLKSDFPNLAFTLN 416
Query: 120 GGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSS-GLTRRQVVEKY 177
GG+ +++E + L+ +M+GRAAY+ PW + D +YGA + L+RR+++E+Y
Sbjct: 417 GGVASIEEAHRLLQTSNMDGIMIGRAAYKYPW-NFRNADRLLYGAKRNPNLSRREIIERY 475
Query: 178 QIYGDAILGTYGNNRPH--------VRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKT- 228
Y + + +G+++ ++KPLL F E G +FKRK + K
Sbjct: 476 IDYAEDLQERWGSDKILDNSKFAMPTTTLVKPLLSLFSGEHGGKVFKRKIGEFWCINKED 535
Query: 229 ---VKSFLEETIVAIPDSVLDS 247
++ +E + +PDS+LD+
Sbjct: 536 RPGLREIVESAVRLLPDSMLDA 557
>gi|449017087|dbj|BAM80489.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 480
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/272 (40%), Positives = 155/272 (56%), Gaps = 28/272 (10%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA--ANTNVPVSVKCRIGVDDHDSYNQL 60
+CGCPS +VAG GCFG +LM D V IA + P++VKCR+GVDD D+Y+
Sbjct: 166 NCGCPSDRVAGRGCFGAALMKDAPGVAALCRAIAEVVPASTPITVKCRLGVDDLDTYSFA 225
Query: 61 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 120
DF+ VS +P RHFIIH+RKA L G+SPAENRT+PPL+Y+ AL RDFP L F++NG
Sbjct: 226 RDFVQVVSENAPVRHFIIHARKAYLKGLSPAENRTVPPLRYDRVLALARDFPHLHFSING 285
Query: 121 GINTVDEVNAAL-RKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGL-TRRQVVEKY- 177
GI T+ +V L + + VMVGRA +PW L VD I+G S TRR V++ Y
Sbjct: 286 GIRTMPQVRHFLDTEHLYGVMVGRAVMNHPWEALAGVDAVIFGDDSCAQRTRRDVLQAYG 345
Query: 178 -----QIYGDAILGTYGNNR----------PHVRDVMKPLLHFFHSEPGNGLFKRKADAA 222
Q++ +I G + R P + ++KP+L+ F P + ++++ A
Sbjct: 346 AYVDKQLHAASIYGQETDERESCSRGSQWTPSLHVLLKPILNLFWGVPRSKEWRKRVQQA 405
Query: 223 ------FQTCKTVKS-FLEETIV-AIPDSVLD 246
+ +VKS F ET + + +S LD
Sbjct: 406 TDEQTRIRRNSSVKSNFSWETFLPQVAESTLD 437
>gi|84999912|ref|XP_954677.1| hypothetical protein [Theileria annulata]
gi|65305672|emb|CAI73997.1| hypothetical protein, conserved [Theileria annulata]
Length = 408
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 138/237 (58%), Gaps = 23/237 (9%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPSP+V+G GCFG SLM + + V + + + +PV+VK R+GVD+ DSY + D
Sbjct: 173 NVGCPSPRVSGKGCFGASLMREKELVRDIVHNMIKELEIPVTVKTRLGVDESDSYEFVKD 232
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS S HFIIHSRKA L GI+P +NRT+PPL+YE + L RDFP L FT+NGG
Sbjct: 233 FVSTVSQ-SGCEHFIIHSRKAWLKGINPKKNRTVPPLQYEKVFRLQRDFPHLKFTINGGF 291
Query: 123 NTVDEVNAALRK----------GAHHVMVGRAAYQNPWYTLGHVDTAIYGA--PSSGLTR 170
T++ + AL + VM+GR AY+NP L +VD IYG P + TR
Sbjct: 292 KTMESILDALNSENVDTDNNPHKLNGVMIGRLAYENPC-ILSNVDKIIYGVENPDTCYTR 350
Query: 171 RQVVEKYQIYGDAILGTYGN---------NRPHVRDVMKPLLHFFHSEPGNGLFKRK 218
R ++E + + A Y N ++ ++KP+L FH E GN +F+RK
Sbjct: 351 RILLEVFYLKFIANFQNYANYIDENVEETANMNISLIVKPILGVFHGEQGNKIFRRK 407
>gi|340503454|gb|EGR30042.1| hypothetical protein IMG5_143780 [Ichthyophthirius multifiliis]
Length = 315
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 129/215 (60%), Gaps = 5/215 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P + E M I ++P +VKCR+GVD+ D Y + F+
Sbjct: 29 GCPSDRVQ-NGKFGACLMKEPTLIAEIMREIKKVCSIPCTVKCRLGVDEFDQYEFVHQFV 87
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS HFIIH+RKA L G++PA+NR IPPLKY+Y L +DFP+L FT+NGG T
Sbjct: 88 KVVSEEGQVEHFIIHARKAFLKGLNPAQNRNIPPLKYDYVLRLKKDFPNLKFTINGGFKT 147
Query: 125 VDEVNAALR--KGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ + LR + MVGR AY+NPW L VD +G + GL+R+Q++E++ YG
Sbjct: 148 YESIEDILRDENQLYGCMVGRLAYENPW-KLSDVDRRFFGKKNPGLSRKQILEEWGKYGK 206
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ NN + + KP+++ F E N ++++
Sbjct: 207 YVQEEEENNLNY-STLNKPIINLFAGEKNNSIYRQ 240
>gi|348671867|gb|EGZ11687.1| hypothetical protein PHYSODRAFT_336192 [Phytophthora sojae]
Length = 379
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 148/271 (54%), Gaps = 27/271 (9%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMS------VIAANTN-----VPVSVKCRIGVDD 53
GCPS V+ CFG LML+P+ V + + +AA N V+VKCRIGVDD
Sbjct: 99 GCPSALVSSR-CFGARLMLEPERVRDICASMRRNVALAAEENPDRPAAEVTVKCRIGVDD 157
Query: 54 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 113
DSY +L ++ V+ + RH I+H+RK LL G+S +NRTIPPL+Y+ Y L +DFP+
Sbjct: 158 CDSYEELHHYVSSVTE-AGVRHIIVHARKCLLKGLSTKDNRTIPPLRYDVVYRLKQDFPE 216
Query: 114 LTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSS-GLTRR 171
L+FTLNGG+ ++ L VM+GRAAY PW D I+ A + L+RR
Sbjct: 217 LSFTLNGGVQSIQHARELLDTTNVDGVMIGRAAYNTPW-NFRDADRLIFNAERNPNLSRR 275
Query: 172 QVVEKYQIYGDAILGTYGNNRP--------HVRDVMKPLLHFFHSEPGNGLFKRKADAAF 223
+++ +Y Y + + +G+ P +MKPLL F+ E G FKR+ A +
Sbjct: 276 EIIARYLDYAEGLQAKWGSTEPLSDSPYTMATSALMKPLLSLFNGEFGGKAFKREISAQW 335
Query: 224 QTCK---TVKSFLEETIVAIPDSVLDSPIEE 251
++ +E + +PD VLD+ +E+
Sbjct: 336 AKKGPRPELREMIESAMKVLPDEVLDARVED 366
>gi|301092884|ref|XP_002997293.1| tRNA-dihydrouridine synthase, putative [Phytophthora infestans
T30-4]
gi|262111428|gb|EEY69480.1| tRNA-dihydrouridine synthase, putative [Phytophthora infestans
T30-4]
Length = 379
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 150/271 (55%), Gaps = 27/271 (9%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAM-----SVIAANTNVP------VSVKCRIGVDD 53
GCPS V+ CFG LML+P+ V + SV A+ P V+VKCRIGVDD
Sbjct: 99 GCPSALVSSR-CFGARLMLEPERVRDICDSMRHSVALASEGNPDHPTAEVTVKCRIGVDD 157
Query: 54 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 113
DSY++L ++ V+S + RH I+H+RK LL G+S +NRTIPPL+YE Y L +DFP+
Sbjct: 158 CDSYDELHHYVAAVAS-AGVRHIIVHARKCLLKGLSTKDNRTIPPLRYEVVYRLKQDFPE 216
Query: 114 LTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSS-GLTRR 171
L+FTLNGG+ ++ L +M+GRAAY PW D I+ A + L+RR
Sbjct: 217 LSFTLNGGVKSIQHARELLNTTNVDGIMIGRAAYNTPW-NFRDADRLIFNAERNPNLSRR 275
Query: 172 QVVEKYQIYGDAILGTYGNNRP--------HVRDVMKPLLHFFHSEPGNGLFKRKADAAF 223
+++E+Y Y + + +G+ P +MKPLL F+ E G FKR+ A +
Sbjct: 276 EIIERYLEYAEDLQAKWGSTEPLSDSPYTMATSALMKPLLSLFNGEFGGKAFKREISAQW 335
Query: 224 QTCK---TVKSFLEETIVAIPDSVLDSPIEE 251
++ +E + +P V+D+ +E+
Sbjct: 336 SKKGPRPELREMIESAMKVLPSEVVDARVED 366
>gi|429328830|gb|AFZ80590.1| tRNA-dihydrouridine synthase, putative [Babesia equi]
Length = 432
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 138/227 (60%), Gaps = 16/227 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPSP+V+G GCFG +LM + V + + + + VSVK R+GVD+ DSY + D
Sbjct: 166 NVGCPSPRVSGKGCFGAALMKTKELVRDIVHTLRRELELEVSVKHRLGVDNLDSYEFVKD 225
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS S HFI+HSRKA L G++P +NR +PPL+YE Y L RDFPDL FT+NGG
Sbjct: 226 FVSTVSE-SGCNHFIVHSRKAWLRGVNPKQNRKVPPLEYEKVYRLQRDFPDLKFTINGGF 284
Query: 123 NTVDEVNAAL------RKGAHH----VMVGRAAYQNPWYTLGHVDTAIYGA--PSSGLTR 170
T++++ AL G H VMVGRA Y+NP L +VD AIYG P + TR
Sbjct: 285 KTIEDIKNALDSENKDSHGVSHSLNGVMVGRATYENPC-MLANVDKAIYGVENPPTCATR 343
Query: 171 RQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
R ++E Y Y D + + ++ ++KP+L F+ E GN ++++
Sbjct: 344 RILLESYADYIDKNVD--DTHEMNICMIVKPILGVFYGEYGNRIYRQ 388
>gi|381150765|ref|ZP_09862634.1| tRNA dihydrouridine synthase A [Methylomicrobium album BG8]
gi|380882737|gb|EIC28614.1| tRNA dihydrouridine synthase A [Methylomicrobium album BG8]
Length = 312
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 129/215 (60%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E ++ + ++PV+VK RIG+DD DSY +L
Sbjct: 80 NVGCPSDRVQ-NGRFGACLMAEPELVAECVAAMRNAVSIPVTVKSRIGIDDRDSYEELAH 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ + R FI+H+RKA L G+SP +NR +PPL+YE Y L +DFP L LNGGI
Sbjct: 139 FIGTVAD-AGCRTFIVHARKAWLKGLSPKQNREVPPLRYEMVYRLKQDFPPLRIVLNGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ ALR G VM+GR AY NP Y L VD ++G P+ + R ++V + Y +
Sbjct: 198 TTLEQAEEALRNGVDGVMMGREAYHNP-YILAEVDRRLFGMPADAVPRSEIVNRLMPYIE 256
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L R H + + +L FH EPG ++R
Sbjct: 257 RQLAE--GVRLH--SITRHILGLFHGEPGARSWRR 287
>gi|156082854|ref|XP_001608911.1| dihydrouridine synthase (Dus) domain containing protein [Babesia
bovis T2Bo]
gi|154796161|gb|EDO05343.1| dihydrouridine synthase (Dus) domain containing protein [Babesia
bovis]
Length = 362
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 137/216 (63%), Gaps = 7/216 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V+G GCFG +LM D VG + + + PV+VK R+GVD +DSY + DFI
Sbjct: 107 GCPSTRVSGKGCFGAALMNDAPLVGRIVKHLRSELGTPVTVKHRLGVDHNDSYEFVRDFI 166
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ T FI+H+RKA LNGI+P +NR+IPPL +E Y L ++FP+L ++NGGI +
Sbjct: 167 STVADQGCT-DFIVHARKAWLNGINPRKNRSIPPLDHERVYRLCQEFPNLNISINGGIKS 225
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGA---PSSGLTRRQVVEKYQIYG 181
++E+ AL +G + VMVGR AY+NP L VDT IYG P++ TRR ++E Y +
Sbjct: 226 LEEIKYALSRGVYGVMVGRMAYENPC-GLVRVDTDIYGEATNPATCKTRRILLETYANFI 284
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
D+ + +V ++KP+L FH E G +F++
Sbjct: 285 DSQASRTSD--MNVCMLVKPILGTFHGEVGTKIFRQ 318
>gi|229594322|ref|XP_001029812.3| TIM-barrel protein, yjbN family [Tetrahymena thermophila]
gi|225566933|gb|EAR82149.3| TIM-barrel protein, yjbN family [Tetrahymena thermophila SB210]
Length = 466
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 142/241 (58%), Gaps = 12/241 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V E M + ++PV+VKCR+GVD+ DSY D
Sbjct: 176 NVGCPSDRVQS-GKFGACLMKEPELVAEIMRKMKEACSIPVTVKCRLGVDNFDSYEFARD 234
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS +HF++H+RKA L G++PA+NR +PPLKY+Y L ++FP L F++NGG
Sbjct: 235 FIKTVSEKGQVQHFVVHARKAFLKGLNPAQNRNVPPLKYDYVLRLKQEFPHLHFSINGGF 294
Query: 123 NTVDEVNAALRK--GAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T D+++ L++ G H M+GRAAY+ PW +D +G + G +RR++++ + Y
Sbjct: 295 KTYDQISDILKQENGLHGCMLGRAAYETPW-LFSDMDRRYFGKQNPGFSRREILQIWGQY 353
Query: 181 GDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKR--KADAAFQTCKTVKSFLEET 236
G ++ +P + + KP+++ F E + ++ A F + + F+++T
Sbjct: 354 GKLVI----QQQPAISIPTLNKPIINLFAGEKHSAKYRHFISDRANFVKFENYEVFMQKT 409
Query: 237 I 237
I
Sbjct: 410 I 410
>gi|15806701|ref|NP_295421.1| tRNA-dihydrouridine synthase A [Deinococcus radiodurans R1]
gi|6459466|gb|AAF11254.1|AE002011_5 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 333
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 134/245 (54%), Gaps = 8/245 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V+ G FG LM P V A+ + A T +PV+VK RIG+DD DSY L
Sbjct: 95 NCGCPSDRVSS-GSFGACLMGTPDVVARAVEAMRAATRLPVTVKHRIGIDDLDSYEHLTG 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + FI+H+RKA L+G+SP ENR IPPL+YE L DFP LT LNGG+
Sbjct: 154 FVRTVAA-AGCEQFIVHARKAWLSGLSPKENREIPPLRYEVVQQLKADFPQLTVVLNGGV 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E AL A VM+GRAAYQ P Y L D ++G + ++RR+ +E Y Y
Sbjct: 213 KSLTEAQQAL-AWADGVMIGRAAYQEP-YLLAAADRDVFGEDAQAVSRREAIEAYLPY-- 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ +P R +MK L F +PG +KR + + +PD
Sbjct: 269 -VAAQVEAGQPLNR-MMKHTLGLFAGQPGARHWKRTLSEQGHKPGAGLDVVRAALAGVPD 326
Query: 243 SVLDS 247
VLD+
Sbjct: 327 DVLDA 331
>gi|39546256|emb|CAD39831.3| OSJNBa0079F16.4 [Oryza sativa Japonica Group]
Length = 1708
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/98 (77%), Positives = 86/98 (87%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS KVAGHGCFG LM DP+FVG+AMS IAAN NVPVSVKCRIGVDD DSY +LC+
Sbjct: 151 NCGCPSGKVAGHGCFGARLMFDPEFVGDAMSAIAANCNVPVSVKCRIGVDDRDSYEELCE 210
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK 100
F+ KV S SPTRHFIIH+RKALL+G+SPAENR +PPLK
Sbjct: 211 FVDKVVSKSPTRHFIIHARKALLSGLSPAENRNVPPLK 248
>gi|392553382|ref|ZP_10300519.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas spongiae
UST010723-006]
Length = 294
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/245 (43%), Positives = 136/245 (55%), Gaps = 15/245 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E +S + A T+VPV+VK RIG+D+ DSY L
Sbjct: 54 NVGCPSDRVQ-NGRFGACLMAEPQLVAECISAMKAETDVPVTVKTRIGIDEQDSYEFLTA 112
Query: 63 FI---YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 119
I Y V R FIIH+RKA L G+SP ENR IPPL YE Y L RDF D +LN
Sbjct: 113 LIDANYNVG----CRDFIIHARKAWLQGLSPKENREIPPLDYERVYQLKRDFSDCHISLN 168
Query: 120 GGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG-APSSGLTRRQVVEKYQ 178
GG+ T+DE L K VMVGR AY NP Y L VD IYG S+ LTR QVV
Sbjct: 169 GGVKTIDECLTHL-KHIDGVMVGREAYANP-YMLAEVDKLIYGDEQSTMLTRHQVVRNMF 226
Query: 179 IYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIV 238
Y ++ + T G N H V++ +L F +PG ++R S LEE +
Sbjct: 227 DYIESEM-TQGANFWH---VVRHMLGIFQGQPGARSYRRHLSENGHKKDAQISLLEEALA 282
Query: 239 AIPDS 243
+P+
Sbjct: 283 FVPEK 287
>gi|429733375|ref|ZP_19267615.1| tRNA dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans Y4]
gi|429154977|gb|EKX97682.1| tRNA dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans Y4]
Length = 285
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 139/241 (57%), Gaps = 19/241 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V E + + +PV+VK RIG+DD DSY+ LCD
Sbjct: 54 NVGCPSDRVQ-NGMFGACLMAKAELVAECVQQMQEAVRIPVTVKTRIGIDDFDSYDFLCD 112
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + R FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 113 FIEKVQQ-AGCREFIVHARKAWLSGLSPKQNREIPPLDYEQVYQLKRDFPHLLISINGGI 171
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE+ L+ VMVGR AYQNP LG++D A++ A + +T R+ VEK Y +
Sbjct: 172 KTIDEMQQHLQL-VDGVMVGREAYQNP-SLLGYIDQALFNANAPIVTPREAVEKMLPYIE 229
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ +++ +L F G ++R KA A + +T F+
Sbjct: 230 QQLSRGVYLNH------IVRHILSAFQHCKGARQWRRYLSENAYKAGAGIEVVETALGFV 283
Query: 234 E 234
E
Sbjct: 284 E 284
>gi|222628527|gb|EEE60659.1| hypothetical protein OsJ_14110 [Oryza sativa Japonica Group]
Length = 257
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/99 (77%), Positives = 87/99 (87%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS KVAGHGCFG LM DP+FVG+AMS IAAN NVPVSVKCRIGVDD DSY +LC+
Sbjct: 151 NCGCPSGKVAGHGCFGARLMFDPEFVGDAMSAIAANCNVPVSVKCRIGVDDRDSYEELCE 210
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 101
F+ KV S SPTRHFIIH+RKALL+G+SPAENR +PPLKY
Sbjct: 211 FVDKVVSKSPTRHFIIHARKALLSGLSPAENRNVPPLKY 249
>gi|71031827|ref|XP_765555.1| tRNA-dihydrouridine synthase A [Theileria parva strain Muguga]
gi|68352512|gb|EAN33272.1| tRNA-dihydrouridine synthase A, putative [Theileria parva]
Length = 471
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 150/282 (53%), Gaps = 39/282 (13%)
Query: 3 SCGCPSPKVAGHG------------CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 50
+ GCPSP+V+G G CFG SLM + + V + + +PV+VK R+G
Sbjct: 193 NAGCPSPRVSGKGIYKFMLKLFNLGCFGASLMKEKELVRDIAHHMLRELEMPVTVKTRLG 252
Query: 51 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 110
VD+ DSY + DF+ VS S HFIIHSRKA L GI+P +NRTIPPL+YE Y L RD
Sbjct: 253 VDEFDSYEFVRDFVSTVSE-SGCDHFIIHSRKAWLKGINPKQNRTIPPLQYEKVYRLQRD 311
Query: 111 FPDLTFTLNGGINTVDEVNAALRK----------GAHHVMVGRAAYQNPWYTLGHVDTAI 160
FP L FT+NGG T++ + AL + VM+GR AY+NP L +VD I
Sbjct: 312 FPHLKFTINGGFKTMESILEALNSENLDSNNNPHKLNGVMIGRLAYENPC-LLSNVDKLI 370
Query: 161 YGA--PSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK 218
YG P + TRR ++E Y Y D N ++ ++KP+L FH E GN +F++
Sbjct: 371 YGVENPDTCYTRRILLENYANYIDENQVDTAN--LNISLIVKPILGVFHGEQGNKIFRQS 428
Query: 219 A-------DAAFQTCKTVKSFLEETIVAIPDSV----LDSPI 249
D + + ++ S ++ + D + LD P+
Sbjct: 429 LSNVYDYDDFIYHSGESRHSMFIHKVIDLMDKINPEALDKPL 470
>gi|416075623|ref|ZP_11585114.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444337443|ref|ZP_21151419.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348006108|gb|EGY46572.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|443546925|gb|ELT56512.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 327
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 139/241 (57%), Gaps = 19/241 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V E + + +PV+VK RIG+DD DSY+ LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKAELVAECVQQMQEAVRIPVTVKTRIGIDDFDSYDFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + R FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 155 FIEKVQQ-AGCREFIVHARKAWLSGLSPKQNREIPPLDYERVYQLKRDFPHLLISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE+ L++ VMVGR AYQNP LG++D A++ A + +T R+ VEK Y +
Sbjct: 214 KTIDEMQQHLQR-VDGVMVGREAYQNP-SLLGYIDQALFNANAPIVTPREAVEKMLPYIE 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ +++ +L F G ++R K A + +T F+
Sbjct: 272 QQLSRGVYLNH------IVRHILSAFQHCKGARQWRRYLSENAYKEGAGIEVVETALGFV 325
Query: 234 E 234
E
Sbjct: 326 E 326
>gi|261866807|ref|YP_003254729.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|416106965|ref|ZP_11590157.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444347209|ref|ZP_21155154.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261412139|gb|ACX81510.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348005862|gb|EGY46331.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|443540777|gb|ELT51304.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 327
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 139/241 (57%), Gaps = 19/241 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V E + + +PV+VK RIG+DD DSY+ LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKAELVAECVQQMQEAVRIPVTVKTRIGIDDFDSYDFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + R FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 155 FIEKVQQ-AGCREFIVHARKAWLSGLSPKQNREIPPLDYERVYQLKRDFPHLLISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE+ L++ VMVGR AYQNP LG++D A++ A + +T R+ VEK Y +
Sbjct: 214 KTIDEMQQHLQR-VDGVMVGREAYQNP-SLLGYIDQALFNANAPIVTPREAVEKMLPYIE 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ +++ +L F G ++R K A + +T F+
Sbjct: 272 QQLSRGVYLNH------IVRHILSAFQHCKGARQWRRYLSENAYKEGAGIEVVETALGFV 325
Query: 234 E 234
E
Sbjct: 326 E 326
>gi|387121479|ref|YP_006287362.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415756685|ref|ZP_11481125.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416036249|ref|ZP_11573666.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|416049171|ref|ZP_11576490.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347991987|gb|EGY33425.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347996565|gb|EGY37630.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|348655707|gb|EGY71147.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385875971|gb|AFI87530.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 327
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 139/241 (57%), Gaps = 19/241 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V E + + +PV+VK RIG+DD DSY+ LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKAELVAECVQQMQEAVRIPVTVKTRIGIDDFDSYDFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + R FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 155 FIEKVQQ-AGCREFIVHARKAWLSGLSPKQNREIPPLDYEQVYQLKRDFPHLLISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE+ L+ VMVGR AYQNP LG++D A++ A + +T R+ VEK Y +
Sbjct: 214 KTIDEMQQHLQL-VDGVMVGREAYQNP-SLLGYIDQALFNANAPIVTPREAVEKMLPYIE 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ +++ +L F G ++R KA A + +T F+
Sbjct: 272 QQLSRGVYLNH------IVRHILSAFQHCKGARQWRRYLSENAYKAGAGIEVVETALGFV 325
Query: 234 E 234
E
Sbjct: 326 E 326
>gi|416056193|ref|ZP_11579807.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|416068298|ref|ZP_11582733.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|444333553|ref|ZP_21149328.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|348001196|gb|EGY41950.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348002217|gb|EGY42923.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|443551562|gb|ELT59375.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 327
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 139/241 (57%), Gaps = 19/241 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V E + + +PV+VK RIG+DD DSY+ LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKAELVAECVQQMQEAVRIPVTVKTRIGIDDFDSYDFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + R FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 155 FIEKVQQ-AGCREFIVHARKAWLSGLSPKQNREIPPLDYERVYQLKRDFPHLLISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE+ L+ VMVGR AYQNP LG++D A++ A + +T R+ VEK Y +
Sbjct: 214 KTIDEMQQHLQL-VDGVMVGREAYQNP-SLLGYIDQALFNANAPIVTPREAVEKMLPYIE 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ +++ +L F G ++R KA A + +T F+
Sbjct: 272 QQLSRGVYLNH------IVRHILSAFQHCKGARQWRRYLSENAYKAGAGIEVVETALGFV 325
Query: 234 E 234
E
Sbjct: 326 E 326
>gi|365966626|ref|YP_004948188.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|416089350|ref|ZP_11587907.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|444349254|ref|ZP_21156747.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|348009398|gb|EGY49552.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|365745539|gb|AEW76444.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443545071|gb|ELT54935.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 327
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 139/241 (57%), Gaps = 19/241 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V E + + +PV+VK RIG+DD DSY+ LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKAELVAECVQQMQEAVRIPVTVKTRIGIDDFDSYDFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + R FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 155 FIEKVQQ-AGCREFIVHARKAWLSGLSPKQNREIPPLDYERVYQLKRDFPHLLISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE+ L++ VMVGR AYQNP LG++D A++ A + +T R+ VEK Y +
Sbjct: 214 KTIDEMQQHLQR-VDGVMVGREAYQNP-SLLGYIDQALFNANAPIVTPREAVEKMLPYIE 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ +++ +L F G ++R K A + +T F+
Sbjct: 272 QQLSRGVYLNH------IVRHILSAFQHCKGALQWRRYLSENAYKEGAGIEVVETALGFV 325
Query: 234 E 234
E
Sbjct: 326 E 326
>gi|403049865|ref|ZP_10904349.1| tRNA-dihydrouridine synthase A [SAR86 cluster bacterium SAR86D]
Length = 323
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 120/183 (65%), Gaps = 4/183 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LML+P V E +S + N +PVS+KCR+GVDDH+ Y+ L +
Sbjct: 93 NVGCPSDRVQK-GRFGACLMLEPNHVAECLSAMQRNVALPVSIKCRLGVDDHEDYDFLYN 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V + S HFIIH+R +L G+SP +NR IPPLKYEY Y L RDFP+L +NGGI
Sbjct: 152 FVQIVKN-SGINHFIIHARNGILKGLSPRQNRHIPPLKYEYVYQLKRDFPELDIIINGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ + L+K VM+GRAAY+NP + + +D+ IY P +++ ++ KY Y +
Sbjct: 211 KSIEDCHEHLKK-VDGVMIGRAAYENP-FLIKDIDSQIYNEPEDTKSKKIILNKYLDYVE 268
Query: 183 AIL 185
+L
Sbjct: 269 DML 271
>gi|119505356|ref|ZP_01627430.1| NifR3/Smm1 family protein [marine gamma proteobacterium HTCC2080]
gi|119458811|gb|EAW39912.1| NifR3/Smm1 family protein [marine gamma proteobacterium HTCC2080]
Length = 295
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 127/215 (59%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+D +S+++L D
Sbjct: 55 NCGCPSDRVQ-NGRFGACLMAEPELVRDCITAMREAVDIPVTVKQRIGIDHQESFDELRD 113
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ FI+H+RKA L G+SP +NR IPPL Y + YAL FP LT LNGGI
Sbjct: 114 FVGIVAE-GGCNVFIVHARKAWLEGLSPKQNREIPPLNYTWVYALKEQFPQLTIVLNGGI 172
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L K VM+GRAAYQ PW L VD+ I+GA +R V+ K Y +
Sbjct: 173 QSLEECEHHLTK-VDGVMLGRAAYQTPWL-LSSVDSRIFGAEDPAYSRESVIYKLSDYVE 230
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + V + +L FH +PG LF+R
Sbjct: 231 TYLAQGGR----LNHVTRHILGLFHQQPGGRLFRR 261
>gi|300176192|emb|CBK23503.2| unnamed protein product [Blastocystis hominis]
Length = 311
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 142/287 (49%), Gaps = 34/287 (11%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS V+ H FG LMLDP V + + A +P++VKCRIGVD+ DSY L
Sbjct: 20 NCGCPSKTVSSHN-FGAKLMLDPPLVRRIIESMKAEVTIPITVKCRIGVDNCDSYESLVH 78
Query: 63 FIY----------------------KVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPL 99
FI +S +P HFI+H+RK LNG++ ENR IP L
Sbjct: 79 FISVVSGVSPSSDSSAEEATEPTDASAASAAPLVSHFIVHARKCWLNGVNTRENRRIPDL 138
Query: 100 KYEYYYALLRDFPDLTFTLNGGINT-------VDEVNAALRKGAHHVMVGRAAYQNPWYT 152
+ ++ + LL DFP L FTLNGGI + +DE++ + VM+GR A Q PW
Sbjct: 139 RPDWVFRLLDDFPTLDFTLNGGIKSFAEAQRYLDELSPKRGRKLRGVMIGRMAMQCPW-M 197
Query: 153 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP-G 211
HVD YG GL+RRQ+VE+Y Y + + T+ +P V +PL F P G
Sbjct: 198 FRHVDEIFYGCKGPGLSRRQIVERYCDYVEKLQETHQKWKPKNDVVFRPLCTLFSGAPRG 257
Query: 212 NGLFKRKADAAFQTCKT-VKSFLEETIVAIPDSVLDSPIEEAPRGRE 257
+F+ K ++ + E++ VLD + P+ E
Sbjct: 258 GAVFRGVLQDKLCIQKMPIRQAVMESLKCFDSEVLDEIDDYDPKNIE 304
>gi|403220421|dbj|BAM38554.1| uncharacterized protein TOT_010000023 [Theileria orientalis strain
Shintoku]
Length = 377
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 141/236 (59%), Gaps = 19/236 (8%)
Query: 3 SCGCPSPKVAGH-GCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 61
+ GCPSP+V+G GCFG LM + + V + + + ++ V+VK R+GVD+ DSY+ +
Sbjct: 110 NAGCPSPRVSGKAGCFGAYLMKEKELVRDIVHDMMRQLDMRVTVKTRLGVDECDSYDFVK 169
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
DF+ VS S HFIIH+RKA L GI+P +NRT+PPL+YE Y L +DFPD+ FT+NGG
Sbjct: 170 DFVSTVSQ-SGCDHFIIHARKAWLRGINPKKNRTVPPLQYEKVYRLQQDFPDIKFTINGG 228
Query: 122 INTVDEVNAAL--RKGAHH--------VMVGRAAYQNPWYTLGHVDTAIYGA--PSSGLT 169
T+D++ A+ H VM+GR AY+NP L +VD IYG P + T
Sbjct: 229 FKTMDDILGAINSENADDHNVPHKLDGVMIGRLAYENPC-ILANVDRLIYGEDNPPTCAT 287
Query: 170 RRQVVEKYQIYGDAILGTYGNNRP-HVRDVMKPLLHFFHSEPGNGLFKRKADAAFQ 224
RR ++E Y Y D T NR ++ V+KP+L FH E G+ +++ ++
Sbjct: 288 RRILLENYAKYIDE---TEEENRDMNIAMVVKPILGVFHGEQGSKFYRQALSNTYE 340
>gi|444918632|ref|ZP_21238696.1| tRNA dihydrouridine synthase A [Cystobacter fuscus DSM 2262]
gi|444709577|gb|ELW50585.1| tRNA dihydrouridine synthase A [Cystobacter fuscus DSM 2262]
Length = 358
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 8/244 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P V + + T +PV+VK R+G+DD DSY L
Sbjct: 80 NVGCPSDRVQ-NGMFGACLMAKPDLVARCVEAMRGATRLPVTVKHRLGIDDLDSYELLTH 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS + FI+H+RKA L G+SP ENR IPPL+YE+ L DFP LT +LNGG+
Sbjct: 139 FVRTVSG-AGCDTFIVHARKAFLQGLSPKENREIPPLRYEWVRQLKTDFPHLTLSLNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E A L + A VM+GR AYQNP Y L D+ I+G + TRRQVVE Q Y +
Sbjct: 198 KSLAEARAHL-EWADGVMIGREAYQNP-YMLALADSVIFGETAPAPTRRQVVESLQPYVE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+L ++ V + +L F PG ++R L + + +P
Sbjct: 256 ELLA----RGEYLSRVTRHILGLFAGLPGARGWRRVLSERANKPGAGLEVLRDALAQVPA 311
Query: 243 SVLD 246
VLD
Sbjct: 312 HVLD 315
>gi|428774197|ref|YP_007165985.1| tRNA-U16,U17-dihydrouridine synthase [Cyanobacterium stanieri PCC
7202]
gi|428688476|gb|AFZ48336.1| tRNA-U16,U17-dihydrouridine synthase [Cyanobacterium stanieri PCC
7202]
Length = 333
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 128/217 (58%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P V + ++ + N+PV+VK RIG+DD DSY Q+ +
Sbjct: 95 NVGCPSARVQS-GNFGACLMAQPHKVAQCIAAMNQAVNIPVTVKHRIGIDDQDSYEQMAN 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K+ + + + F++H+RKA L G+SP ENR IPPL+YE Y L RDFP L +NGGI
Sbjct: 154 FV-KIVAQAGCQRFVVHARKAWLQGLSPKENRHIPPLRYEDVYRLKRDFPHLIIEINGGI 212
Query: 123 NTVDEVNAA--LRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T++++ A L G VM+GR A NP Y L +D IYG + TR +V+E Y
Sbjct: 213 TTLEQIKAQFPLVDG---VMIGRVACDNP-YLLASIDQEIYGDDTPIPTREEVIESVLDY 268
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
D +G+ + +M+ LL F +PG ++KR
Sbjct: 269 VD----FWGDRHVKLNSIMRHLLQIFAGQPGTKIWKR 301
>gi|428771509|ref|YP_007163299.1| tRNA-U16,U17-dihydrouridine synthase [Cyanobacterium aponinum PCC
10605]
gi|428685788|gb|AFZ55255.1| tRNA-U16,U17-dihydrouridine synthase [Cyanobacterium aponinum PCC
10605]
Length = 336
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 124/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P V + + N+PV+VK RIG+DD DSY L +
Sbjct: 103 NVGCPSSRVQ-NGNFGACLMAQPDTVARCVEAMNKAVNIPVTVKHRIGIDDQDSYGDLLN 161
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VSS R FIIH+RKA L G+SP ENR IPPL+YE Y + +D P LT +NGGI
Sbjct: 162 FIKIVSSTGCDR-FIIHARKAWLQGLSPKENREIPPLRYEDVYQIKQDLPHLTIEINGGI 220
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++ L K VM+GRAAY NP Y +D IYG+ TR ++VE Y D
Sbjct: 221 KTIEATKQHLTK-VDGVMIGRAAYDNP-YLFASIDQEIYGSSEPIKTREEIVESLYPYID 278
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L T N + + +M+ L F +PG+ ++KR
Sbjct: 279 --LWTSRNLK--LNTIMRHTLQIFAGQPGSKIWKR 309
>gi|260914683|ref|ZP_05921149.1| tRNA-dihydrouridine synthase A [Pasteurella dagmatis ATCC 43325]
gi|260631282|gb|EEX49467.1| tRNA-dihydrouridine synthase A [Pasteurella dagmatis ATCC 43325]
Length = 328
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 138/239 (57%), Gaps = 19/239 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V E ++ + ++PV+VK RIG+DD DSY LCDF+
Sbjct: 98 GCPSDRVQ-NGMFGACLMGKADLVAECINAMQEVVDIPVTVKTRIGIDDLDSYEFLCDFV 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + FIIH+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI T
Sbjct: 157 QKVHQ-AGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPQLIMSINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG++D A++ S +T R+ VEK Y +
Sbjct: 216 IEEMQQHLQY-MDGVMVGREAYQNP-SLLGYIDQALFDPTSPIVTPREAVEKMFPYIEQQ 273
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L G Y N+ +++ +L F S G ++R KA A + + SF+E
Sbjct: 274 LTQGVYLNH------MVRHMLGAFQSCKGARQWRRYLSENAHKAGAGLEVVEQALSFIE 326
>gi|418720229|ref|ZP_13279427.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii str. UI
09149]
gi|418738504|ref|ZP_13294899.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|421095040|ref|ZP_15555753.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii str.
200801926]
gi|410361750|gb|EKP12790.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii str.
200801926]
gi|410743207|gb|EKQ91950.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii str. UI
09149]
gi|410745997|gb|EKQ98905.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|456890640|gb|EMG01444.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii str.
200701203]
Length = 339
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 136/244 (55%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + N ++PV+VKCRIG+ ++ LC
Sbjct: 98 NVGCPSDRVR-EGNFGACLMETPERVAELVCAMDGNVSIPVTVKCRIGISGKETLEDLCR 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + R FI+H+R A+L G+SPA+NR IPPL+Y Y +L ++FPDL +NGGI
Sbjct: 157 FIECVRQ-AGVRRFIVHARIAILGGLSPAQNRQIPPLRYAYVESLKKEFPDLLIEINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E+ L K VM+GRAAY+ P Y VD+ + S L+RR+V+ + + Y +
Sbjct: 216 RTLAEMQDRL-KTNDGVMIGRAAYETP-YLFSEVDSLFFHDNSPSLSRREVLLRMRDYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH + G F+R C L + I IP+
Sbjct: 274 EVVLKEKNGKPH--HALRHMLGLFHGQKGARSFRRVVTERMY-CDYSSDLLLDAIQEIPN 330
Query: 243 SVLD 246
LD
Sbjct: 331 DTLD 334
>gi|297624812|ref|YP_003706246.1| yjbN family TIM-barrel protein [Truepera radiovictrix DSM 17093]
gi|297165992|gb|ADI15703.1| TIM-barrel protein, yjbN family [Truepera radiovictrix DSM 17093]
Length = 354
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/246 (39%), Positives = 140/246 (56%), Gaps = 11/246 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPSP+V G FG LM P+ V ++ + T +PV+VK RIG+DD D ++ L
Sbjct: 94 NVGCPSPRVQ-RGNFGACLMAQPERVAACVAAMREATTLPVTVKHRIGIDDRDRFDDLAH 152
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ +P R F +H+RKA L+G+SP ENRT+PPL+YE Y L R P+L LNGG+
Sbjct: 153 FVEVVAQAAPAR-FTVHARKAWLSGLSPKENRTVPPLRYEEVYQLKRLHPELEIELNGGV 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ A L + VM+GRAAY++P Y L D YGAP TRR+VVE + Y
Sbjct: 212 RSLEAAAAHLGR-VDAVMIGRAAYEDP-YALARADALFYGAPHVP-TRREVVEAFLPYAS 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-KADAAFQTCKTVKSFLEETIVAIP 241
L + + + LL F PG ++R ++ A Q V+ LE + A+P
Sbjct: 269 RQL----ERGVPLASLTRHLLGLFTGAPGARAWRRLLSEQAHQPGAGVE-VLERALGALP 323
Query: 242 DSVLDS 247
D VLD+
Sbjct: 324 DEVLDA 329
>gi|113460197|ref|YP_718254.1| tRNA-dihydrouridine synthase A [Haemophilus somnus 129PT]
gi|112822240|gb|ABI24329.1| tRNA-U16,U17-dihydrouridine synthase [Haemophilus somnus 129PT]
Length = 328
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 138/240 (57%), Gaps = 19/240 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V E ++ + + N+PV+VK R+G+D+ DSY LCDFI
Sbjct: 98 GCPSDRVQ-NGMFGACLMARADLVAECVNAMQSAVNIPVTVKTRLGIDEFDSYEFLCDFI 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV ++ + FIIH+RKA L+G+SP ENR IPPL YE Y L +DFPDL ++NGGI T
Sbjct: 157 EKVHNIG-CQEFIIHARKAWLSGLSPKENREIPPLNYERVYQLKKDFPDLLISINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L VMVGR AYQNP LG++D A++ + +T RQ +E Y +
Sbjct: 216 LEEIQRHLNY-VDGVMVGREAYQNP-SLLGYIDQALFDPSCAIITPRQAIENMFPYIEQQ 273
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
L G Y N+ + + LL F G ++R K+ A + + +F+EE
Sbjct: 274 LSQGVYLNH------IARHLLGAFQQCKGARQWRRYMSENIHKSHAGVEVIEKALTFIEE 327
>gi|415770748|ref|ZP_11485017.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|348656654|gb|EGY74263.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-2]
Length = 270
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 114/174 (65%), Gaps = 4/174 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V E + + +PV+VK RIG+DD DSY+ LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKAELVAECVQQMQEAVRIPVTVKTRIGIDDFDSYDFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + R FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 155 FIEKVQQ-AGCREFIVHARKAWLSGLSPKQNREIPPLDYERVYQLKRDFPHLLISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEK 176
T+DE+ L++ VMVGR AYQNP LG++D A++ A + +T R+ VEK
Sbjct: 214 KTIDEMQQHLQR-VDGVMVGREAYQNP-SLLGYIDQALFNANAPIVTPREAVEK 265
>gi|386855677|ref|YP_006259854.1| tRNA-dihydrouridine synthase A [Deinococcus gobiensis I-0]
gi|379999206|gb|AFD24396.1| tRNA-dihydrouridine synthase A [Deinococcus gobiensis I-0]
Length = 335
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 136/253 (53%), Gaps = 9/253 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P V A + T++PV+VK RIG+DD DSY L
Sbjct: 80 NCGCPSDRVQS-GAFGACLMATPDVVARAAEAMRHATSLPVTVKHRIGIDDLDSYGHLAH 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ S FI+H+RKA L+G+SP ENR IPPL+Y+ L +FP LT LNGGI
Sbjct: 139 FVGTVAQ-SGVTTFIVHARKAWLSGLSPKENREIPPLRYDVVQRLKAEFPHLTVVLNGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++D AL A M+GRAAYQ+P + L D ++G ++ +TRR+ E Y Y
Sbjct: 198 LSLDAAQDAL-AWADGAMIGRAAYQDP-FLLAAADRDLFGEAATPVTRREATEAYLPY-- 253
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ +P R +MK L F +PG +KR +E + +PD
Sbjct: 254 -VAAQLAQGQPLNR-MMKHTLGLFAGQPGARHWKRTISEQGHRPGAGLEVVEAALAGVPD 311
Query: 243 SVLDSPI-EEAPR 254
VLD+ E AP+
Sbjct: 312 EVLDARAGETAPQ 324
>gi|315633448|ref|ZP_07888738.1| tRNA-dihydrouridine synthase A [Aggregatibacter segnis ATCC 33393]
gi|315477490|gb|EFU68232.1| tRNA-dihydrouridine synthase A [Aggregatibacter segnis ATCC 33393]
Length = 327
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 138/242 (57%), Gaps = 19/242 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM + + V E + + + ++PV+VK RIG+DD DSY+ LCD
Sbjct: 96 NVGCPSDRVQN-GMFGACLMANAELVAECVQQMQSAVHIPVTVKTRIGIDDFDSYDFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KV + + FI+H+RKA L+G+SP +NR IPPL YE Y L +DFP L ++NGGI
Sbjct: 155 FVQKVHQ-AGCQEFIVHARKAWLSGLSPKQNREIPPLNYERVYQLKQDFPHLLISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T +E+ L K VMVGR AYQNP LGH+D ++ A + +T RQ VE Y +
Sbjct: 214 KTTEEMQQHL-KYVDGVMVGREAYQNP-ALLGHIDHTLFDANAPIITPRQAVENMFPYIE 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ +++ +L F G ++R KA A +T F+
Sbjct: 272 QQLSQGVYLNH------IVRHMLGAFQHCKGARQWRRYLSENAYKAGAGIDVVETALGFV 325
Query: 234 EE 235
EE
Sbjct: 326 EE 327
>gi|398338004|ref|ZP_10522709.1| tRNA-dihydrouridine synthase A [Leptospira kmetyi serovar Malaysia
str. Bejo-Iso9]
Length = 339
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 138/244 (56%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V + ++ + A +PV+VKCRIG+ +++ LC
Sbjct: 98 NVGCPSDRVR-EGNFGACLMETPEKVADLVAAMDAAVKIPVTVKCRIGIPGKETFEDLCR 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V + R I+H+R A+L G+SPA+NR IPPL+Y +L R+FPDL +NGGI
Sbjct: 157 FVECVRQ-AGVRRLIVHARIAILGGLSPAQNRQIPPLRYADVESLKREFPDLLIEINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L K VM+GRAAY+ P Y VD+ +G S L+RR++V + + Y +
Sbjct: 216 RTIEEIRERL-KTNDGVMIGRAAYETP-YLFSEVDSLFFGDDSPVLSRREIVLRMKEYVE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
IL N +PH ++ +L FH E G F+R + + L + + IPD
Sbjct: 274 EILLKETNGKPH--HALRHVLGLFHGERGARSFRRILTEGMYSDYS-NDLLLKAMREIPD 330
Query: 243 SVLD 246
LD
Sbjct: 331 DSLD 334
>gi|416051235|ref|ZP_11577333.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347993253|gb|EGY34627.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 311
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 136/241 (56%), Gaps = 19/241 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + V E + + +PV+VK RIG+DD DSY+ LC+FI
Sbjct: 81 GCPSDRVQ-NGMFGACLMANAALVAECVQQMQEAVRIPVTVKTRIGIDDFDSYDFLCNFI 139
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V + R FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI T
Sbjct: 140 ETVQQ-AGCREFIVHARKAWLSGLSPKQNREIPPLDYERVYQLKRDFPHLLISINGGIKT 198
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+DE+ L++ VMVGR AYQNP LG++D ++ + +T RQ VEK Y +
Sbjct: 199 LDEMQQHLQR-VDGVMVGREAYQNP-SLLGYIDQTLFDPNAPIVTPRQAVEKMFPYIEQQ 256
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
L G Y N+ +++ +L F G ++R KA A +T F+EE
Sbjct: 257 LSQGVYLNH------IVRHMLGAFQHCKGARQWRRHLSENAYKAGAGINVVETALGFVEE 310
Query: 236 T 236
Sbjct: 311 A 311
>gi|419803161|ref|ZP_14328335.1| tRNA dihydrouridine synthase A [Haemophilus parainfluenzae HK262]
gi|419844573|ref|ZP_14367861.1| tRNA dihydrouridine synthase A [Haemophilus parainfluenzae HK2019]
gi|385188331|gb|EIF35818.1| tRNA dihydrouridine synthase A [Haemophilus parainfluenzae HK262]
gi|386417233|gb|EIJ31720.1| tRNA dihydrouridine synthase A [Haemophilus parainfluenzae HK2019]
Length = 328
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 140/241 (58%), Gaps = 19/241 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V E ++ + + N+PV+VK RIG+DD DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVAECIAEMQSVVNIPVTVKTRIGIDDLDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + + FI+H+RKA L+G+SP ENR IPPL Y+ Y L +DFP LT +NGGI
Sbjct: 155 FIEKVHH-AGCQEFIVHARKAWLSGLSPKENREIPPLDYDRVYQLKKDFPQLTIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L + VMVGR AYQNP LG+VD ++ A ++ +T RQ VE Y +
Sbjct: 214 KTIEEMKHHL-QFVDGVMVGREAYQNP-SLLGYVDQMLFDANANIVTPRQAVEAMFPYIE 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ +++ +L F + G ++R K A + +T SF+
Sbjct: 272 KQLSQGVYLNH------IVRHMLGAFQNCKGARQWRRYLSENAFKQGAGIEVVETALSFV 325
Query: 234 E 234
E
Sbjct: 326 E 326
>gi|52426107|ref|YP_089244.1| tRNA-dihydrouridine synthase A [Mannheimia succiniciproducens
MBEL55E]
gi|52308159|gb|AAU38659.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 327
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 136/240 (56%), Gaps = 15/240 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V E + + A +PV+VK RIG+D+ DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVAECVEKMQAEVEIPVTVKTRIGIDNLDSYQFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV S FI+H+RKA L+G+SP ENR IPPL Y Y L RDFP L+ ++NGGI
Sbjct: 155 FIQKVHS-KGCNEFIVHARKAWLSGLSPKENREIPPLDYNRVYQLKRDFPQLSISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ A L+ VMVGR AYQNP LG +D A++ + +T R+ VEK Y +
Sbjct: 214 KTIEEMTAHLQY-VDGVMVGREAYQNP-ALLGQIDRALFDLNAPIVTPREAVEKMFPYIE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
L + H+ +++ +L F + G ++R K A + +T F+EE
Sbjct: 272 RQL----SRGVHLNHIVRHMLGAFQNCKGARQWRRLLSENAHKTGAGIEILETALHFVEE 327
>gi|94986095|ref|YP_605459.1| tRNA-dihydrouridine synthase A [Deinococcus geothermalis DSM 11300]
gi|94556376|gb|ABF46290.1| tRNA-U16,U17-dihydrouridine synthase [Deinococcus geothermalis DSM
11300]
Length = 344
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 133/245 (54%), Gaps = 8/245 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G FG LM P V A+ + T +PV+VK RIG+DD DSY L
Sbjct: 95 NCGCPSDRVQ-NGSFGACLMATPDVVARAVEAMRGATTLPVTVKHRIGIDDLDSYEHLTR 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + + FI+H+RKA L+G+SP ENR IPPL+YE L DFP LT LNGG+
Sbjct: 154 FVRTVAE-AGCQTFIVHARKAWLSGLSPKENREIPPLRYEVVRQLKADFPHLTVVLNGGV 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ L A VMVGRAAYQ+P Y L D ++G + TRR+ +E + Y
Sbjct: 213 LTLAAAQEHL-AWADGVMVGRAAYQDP-YLLAAADRDLFGEDVTPPTRREAIEAFLPY-- 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ +P R +M+ L F +PG +KR + E + +P+
Sbjct: 269 -VAAQLAEGQPLHR-MMRHTLGLFAGQPGARHWKRTLSERGHRPGAGLEVVREALAGVPE 326
Query: 243 SVLDS 247
SVLD+
Sbjct: 327 SVLDA 331
>gi|323454823|gb|EGB10692.1| hypothetical protein AURANDRAFT_22498 [Aureococcus anophagefferens]
Length = 378
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 135/264 (51%), Gaps = 26/264 (9%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV---------DD 53
+CGCPS +VAG GCFG +LM D V + + +A + PVSVKCR+GV DD
Sbjct: 112 NCGCPSDRVAGQGCFGAALMRDAALVADCVDALA--EHAPVSVKCRVGVCDTVSDMVDDD 169
Query: 54 HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 113
Y L +F+ V++ HF++H+R A+L+G+SP +NR +PPLK L +FP+
Sbjct: 170 EALYAGLANFVSTVAARGTCAHFVVHARVAVLSGLSPDKNRKVPPLKPRLVSRLADEFPE 229
Query: 114 LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSS-GLTRRQ 172
LT NG I++ + VM GR + PWY +VD+A++GA + +RR
Sbjct: 230 LTVVSNGEISSYESARDRSEGNVAGVMAGRDVCKRPWY-YANVDSALFGADADPAASRRD 288
Query: 173 VVEKYQIYGDAILGTYGNNRPHV-------RDVMKPLLHFFHSEPGNGLFKRKADAAFQT 225
V + G H R ++KP L FH PG G FKR+ DA +
Sbjct: 289 V-----LLGAYAAYAAAFEADHARADWSPRRALLKPALGLFHGSPGAGRFKREVDALAKG 343
Query: 226 CKT-VKSFLEETIVAIPDSVLDSP 248
V+ LE +PD VLD+P
Sbjct: 344 GDAGVREILERAAALVPDDVLDAP 367
>gi|298707058|emb|CBJ29860.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 379
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 151/276 (54%), Gaps = 28/276 (10%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGE-AMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 61
+CGCPS KV+ CFG LMLDP+ V E +I T PV+VKCRIGVDD DSY++L
Sbjct: 96 NCGCPSSKVSDR-CFGARLMLDPERVREITYGMIRKVTRTPVTVKCRIGVDDKDSYDELT 154
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
F+ V + + H ++H+RK LL G+S + NRTIPPL+Y+ + L ++FP+L LNGG
Sbjct: 155 TFVRAVKA-AGIDHVVVHARKCLLKGLSTSANRTIPPLRYDVVHRLAQEFPELEIVLNGG 213
Query: 122 INTVDEVNAALRKGAH---------HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQ 172
I+++ VN + VMVGRAAY +PW T H D+A++G+ G TRR+
Sbjct: 214 IDSLGAVNEHITGTGEWGEYGGGVAGVMVGRAAYFDPW-TFRHTDSAVFGSSDPGFTRRE 272
Query: 173 VVEKYQIYGDAIL------GTYGNNRPH--VRDVMKPLLHFFHSEPGNGLFKRKADAAFQ 224
++E+ ++ G N H + V KPL + G+ F+++ A Q
Sbjct: 273 IMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQ 332
Query: 225 TCKTV-------KSFLEETIVAIPDSVLDSPIEEAP 253
+ + ++ + +P+ VLD P+ + P
Sbjct: 333 AQSKIDPDTDDFRDAVDRAMALLPEGVLDEPVGDTP 368
>gi|403335975|gb|EJY67174.1| TIM-barrel protein, yjbN family [Oxytricha trifallax]
Length = 419
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 134/242 (55%), Gaps = 9/242 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS K GCFG LM DPK V E + + ++PV+VKCR+GVDD D Y +
Sbjct: 128 NCGCPSSKTR-DGCFGAVLMFDPKLVAEITREMMKSCSIPVTVKCRLGVDDLDKYEDVHK 186
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS+ FIIH+RK LL+G+SP ENR +P L+Y++ L +DFPDL F +NGG
Sbjct: 187 FIRIVSTEGGVNKFIIHARKCLLSGLSPHENRMVPELRYDWVLRLKQDFPDLRFVINGGF 246
Query: 123 NTVDEVNAALRK--GAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
++ +++ G VMVGR AY PW L +D ++G + LTR +++ Y Y
Sbjct: 247 TDPQKIQDIMKEENGLEGVMVGRLAYNFPW-ALPVIDRQLFGHSTPTLTREEIILDYAEY 305
Query: 181 G--DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-KADAAFQTC--KTVKSFLEE 235
+ G R ++KP+++ F E G F++ +D A + VK L E
Sbjct: 306 AQREQDQGLDRGERIPNPLLVKPVINIFSGEYEGGKFRKCLSDNAIKKIYKGKVKEVLLE 365
Query: 236 TI 237
T+
Sbjct: 366 TL 367
>gi|226356731|ref|YP_002786471.1| tRNA-dihydrouridine synthase A [Deinococcus deserti VCD115]
gi|226318721|gb|ACO46717.1| putative tRNA-dihydrouridine synthase A [Deinococcus deserti
VCD115]
Length = 346
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 132/245 (53%), Gaps = 8/245 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V+ G FG LM P V A+ + T +PV+VK RIG+DD DSY L
Sbjct: 100 NCGCPSDRVSS-GSFGACLMGTPDVVARAVEAMRGVTRLPVTVKHRIGIDDLDSYEHLTR 158
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V + + + FI+H+RKA L+G+SP ENR IPPL+YE L DFP LT LNGG+
Sbjct: 159 FVRTVEA-AGCQTFIVHARKAWLSGLSPKENREIPPLRYEVVEQLKADFPHLTVVLNGGV 217
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ + AL A VM+GRAAYQ P Y L D I+G + +TRR+ +E + Y
Sbjct: 218 LDLRQAQGAL-NWADGVMIGRAAYQTP-YVLAAADHEIFGEAAVPVTRREAIEAFLPY-- 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ G +P R +MK L F +PG +KR + + +P
Sbjct: 274 -VAGQLAAGQPLNR-MMKHTLGLFAGQPGARHWKRTLSEQGHRDGAGLEVVRAALEGVPA 331
Query: 243 SVLDS 247
VLD+
Sbjct: 332 EVLDA 336
>gi|325282314|ref|YP_004254855.1| TIM-barrel protein, yjbN family [Deinococcus proteolyticus MRP]
gi|324314123|gb|ADY25238.1| TIM-barrel protein, yjbN family [Deinococcus proteolyticus MRP]
Length = 346
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 133/245 (54%), Gaps = 8/245 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P V ++ + T +PV+VK RIG+DD + Y L
Sbjct: 108 NCGCPSDRVQS-GAFGACLMATPDVVAACVAAMQEATRLPVTVKHRIGIDDQEDYMDLRR 166
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + R FI+H+RKA L G+SP ENR IPPL+YE L +FP+LT +LNGG+
Sbjct: 167 FVETVAG-AGCRTFIVHARKAWLKGLSPKENREIPPLRYELVEQLKAEFPELTISLNGGV 225
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L A VMVGRAAYQ P Y L VD I+G +S TRR+V+ +++ Y
Sbjct: 226 QTLAQAQEHL-TWADGVMVGRAAYQTP-YLLARVDQDIFGEDASPPTRREVLARFRPY-- 281
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ G H + K L F + G +KR L++ + +PD
Sbjct: 282 VVQGLAEGQSFH--HLTKSTLGLFAGQHGARHYKRTLSELGHRAGAGIEVLDQAVAGVPD 339
Query: 243 SVLDS 247
VLD+
Sbjct: 340 DVLDA 344
>gi|170718234|ref|YP_001785255.1| tRNA-dihydrouridine synthase A [Haemophilus somnus 2336]
gi|168826363|gb|ACA31734.1| TIM-barrel protein, yjbN family [Haemophilus somnus 2336]
Length = 328
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 137/240 (57%), Gaps = 19/240 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V E ++ + + N+PV+VK R+G+D+ DSY LCDFI
Sbjct: 98 GCPSDRVQ-NGMFGACLMARAALVAECVNAMQSAVNIPVTVKTRLGIDEFDSYEFLCDFI 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV ++ + FIIH+RKA L+G+SP ENR IPPL YE Y L +DFP L ++NGGI T
Sbjct: 157 EKVHNIG-CQEFIIHARKAWLSGLSPKENREIPPLNYERVYQLKKDFPHLLISINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L VMVGR AYQNP LG++D A++ + +T RQ +E Y +
Sbjct: 216 LEEIQQHLNY-VDGVMVGREAYQNP-SLLGYIDQALFDPSCAIITPRQAIENMFPYIEQQ 273
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
L G Y N+ + + LL F G ++R K+ A + + +F+EE
Sbjct: 274 LSQGVYLNH------IARHLLGAFQQCKGARQWRRYMSENIHKSHAGVEVIEKALTFIEE 327
>gi|427725902|ref|YP_007073179.1| tRNA-U16,U17-dihydrouridine synthase [Leptolyngbya sp. PCC 7376]
gi|427357622|gb|AFY40345.1| tRNA-U16,U17-dihydrouridine synthase [Leptolyngbya sp. PCC 7376]
Length = 324
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 133/239 (55%), Gaps = 8/239 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPSP+V G FG LM P+ V ++ + N+PV+VK RIGVD+ DSY LC
Sbjct: 91 NVGCPSPRVQ-QGNFGACLMTQPEVVANCIAAMQNAVNIPVTVKHRIGVDEQDSYEDLCR 149
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS R F +H+RKA L G+SP ENRT+PPL+YE Y L ++FP+L +NGGI
Sbjct: 150 FVEIVSQTGCDR-FSVHARKAWLQGLSPKENRTVPPLRYEDVYRLKQEFPNLWIEINGGI 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ ++ L + + VM+GRAAY NP Y VD IYG + TR ++VE Y
Sbjct: 209 TELAQIKNHLEQ-VNAVMIGRAAYDNP-YLFATVDRDIYGEATEPKTRHEIVESMLPY-- 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
I ++ N + + + +L F +PG +KR + + + +E+ + +P
Sbjct: 265 -IERSHANG-VKLHSISRHMLSIFLGKPGTKAWKRYITEEGRGFEVSREVIEQALALVP 321
>gi|398332309|ref|ZP_10517014.1| tRNA-dihydrouridine synthase A [Leptospira alexanderi serovar
Manhao 3 str. L 60]
Length = 339
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 135/242 (55%), Gaps = 7/242 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LM P+ V E + + +N ++PV+VKCRIG+ ++ LC FI
Sbjct: 100 GCPSDRVR-EGNFGACLMETPEKVAELVCAMDSNVSIPVTVKCRIGIPGKETLEDLCRFI 158
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V + R FI+H+R A+L G+SPA+NR IPPL+Y Y +L FPDL +NGGI T
Sbjct: 159 ECVRQ-AGVRRFIVHARIAVLGGLSPAQNRQIPPLRYAYVESLKEQFPDLLIEINGGIRT 217
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+ E+ L+K VM+GRAAY+ P Y VD+ + S L+RR+V+ + + Y + +
Sbjct: 218 LAEMQDRLKKN-DGVMIGRAAYETP-YLFSEVDSLFFRDNSPSLSRREVLLRMRDYIEEV 275
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSV 244
+ N +PH ++ +L FH E G F+R C L + + I ++
Sbjct: 276 VLKEKNGKPH--HALRHMLGLFHGEKGARSFRRILTERM-YCDYSSDLLLDAVQEISNNT 332
Query: 245 LD 246
LD
Sbjct: 333 LD 334
>gi|90408335|ref|ZP_01216499.1| NifR3/Smm1 family protein [Psychromonas sp. CNPT3]
gi|90310566|gb|EAS38687.1| NifR3/Smm1 family protein [Psychromonas sp. CNPT3]
Length = 333
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 137/240 (57%), Gaps = 15/240 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P+ V +A++ + T +P++VK RIG+DD DSY LCDFI
Sbjct: 100 GCPSDRVQ-NGRFGACLMAEPELVADAVAAMRDATGLPITVKTRIGIDDLDSYEFLCDFI 158
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + +FIIH+RKA L+G+SP +NR +PPL ++ Y L +DFP L +NGGI T
Sbjct: 159 SKVHA-KGCDNFIIHARKAWLSGLSPKQNRDVPPLDHDRVYQLKKDFPQLMIAINGGIKT 217
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+DE L+ VM+GR AY NP Y L VD A++G LTR +V+E+ Y +
Sbjct: 218 LDECKTHLQH-LDGVMLGREAYANP-YLLSQVDKALFGCTKKPLTRFEVLEQMYPYIEQQ 275
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKAD-------AAFQTCKTVKSFLEETI 237
L +N ++ + + +L F PG ++R + + + SF+ E I
Sbjct: 276 L----SNGSYLNHMGRHMLGLFQGLPGARAWRRHLSENGHLPGSGIEVMQKAASFVTEEI 331
>gi|251793819|ref|YP_003008551.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus NJ8700]
gi|422337222|ref|ZP_16418194.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus F0387]
gi|247535218|gb|ACS98464.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus NJ8700]
gi|353345774|gb|EHB90065.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus F0387]
Length = 327
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 138/242 (57%), Gaps = 19/242 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P V E + + + +PV+VK RIG+DD DSY+ L +
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKPNLVAECVQQMQSAVQIPVTVKTRIGIDDFDSYDFLYN 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V + R FI+H+RKA L+G+SP +NR IP L YE Y L RDFPDL ++NGGI
Sbjct: 155 FVQTVKQVG-CREFIVHARKAWLSGLSPKQNREIPLLDYERVYQLKRDFPDLLISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LGH+D A++ + +T RQ V + Y +
Sbjct: 214 KTIEEIQQHLQH-VDGVMVGREAYQNP-SLLGHIDQALFDPNAPIITPRQAVARMLPYIE 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
+ L G Y N+ +++ +L F + G ++R K A + +T F+
Sbjct: 272 SQLSQGVYLNH------IVRHMLGAFQNCKGARQWRRYLSENAYKEGAGIEMVETALGFV 325
Query: 234 EE 235
EE
Sbjct: 326 EE 327
>gi|257059573|ref|YP_003137461.1| tRNA-dihydrouridine synthase A [Cyanothece sp. PCC 8802]
gi|256589739|gb|ACV00626.1| TIM-barrel protein, yjbN family [Cyanothece sp. PCC 8802]
Length = 331
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 129/239 (53%), Gaps = 8/239 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LML P+ V + + N+P+++K RIGVD+ D Y L +
Sbjct: 93 NVGCPSDRVQS-GNFGACLMLQPELVARCVEAMQKRVNIPITIKHRIGVDERDRYEDLVN 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K+ S + + F +H+RKA L G+SP ENRTIPPL+YE Y L +DFP L +NGGI
Sbjct: 152 FV-KIVSEAGCQRFTVHARKAWLKGLSPKENRTIPPLRYEEVYQLKKDFPQLFIEINGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D++ L + VM+GRAAY NP Y VD IYG TR QVVEK Y D
Sbjct: 211 ITLDQIEHHL-QFVDGVMIGRAAYDNP-YLFATVDRDIYGQNIIPPTRHQVVEKMLPYID 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
+ NN + + + +L F PG +KR +EE + +P
Sbjct: 269 ----YWVNNGLKLHAISRHILAIFGGVPGTKAWKRHISENAHLPGAGVKVIEEALGKVP 323
>gi|418465593|ref|ZP_13036527.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359755865|gb|EHK90027.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 328
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 138/243 (56%), Gaps = 19/243 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V E + + +PV+VK RIG+DD DSY+ LC+
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMANAALVAECVQQMQEAVRIPVTVKTRIGIDDFDSYDFLCN 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI + + + FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 155 FIETLQQ-AGCQEFIVHARKAWLSGLSPKQNREIPPLDYERVYQLKRDFPHLLISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE+ L++ VMVGR AYQNP LG++D A++ + +T RQ VEK Y +
Sbjct: 214 KTLDEMQRHLQQ-VDGVMVGREAYQNP-SLLGYIDQALFDPNAPIVTPRQAVEKMFPYIE 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ +++ +L F G ++R KA A +T F+
Sbjct: 272 QQLSQGVYLNH------IVRHMLGAFQHCKGARQWRRHLSENVYKAGAGINVVETALGFV 325
Query: 234 EET 236
EE
Sbjct: 326 EEA 328
>gi|398343502|ref|ZP_10528205.1| tRNA-dihydrouridine synthase A [Leptospira inadai serovar Lyme str.
10]
Length = 356
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 136/248 (54%), Gaps = 9/248 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS KV G FG LM DPK V + ++ + + +PVSVKCRIG+ D L +
Sbjct: 112 NVGCPSDKVQ-EGNFGACLMGDPKRVSDCIAAMNSAVRIPVSVKCRIGIPGKDRIEDLLE 170
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS TR +H+R A+L G+SPA+NRT+PPL+YE Y + R+FPDL LNGG+
Sbjct: 171 FVRTVSEAGATR-ITVHARIAILEGLSPAQNRTVPPLRYEDVYEVKRNFPDLKLELNGGV 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D + L K VM+GRAAY+NP + L VD +G TRR++ ++ Q Y
Sbjct: 230 RTLDIASEHLTK-VDGVMIGRAAYENP-FLLSTVDRRFFGEQKIRSTRREIFDQMQEYVR 287
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
T +P +++ LL FH G+ +++R + L E + +IP
Sbjct: 288 K--RTEEGEKPS--RILRHLLGAFHEVRGSRMYRRILTEGMHQNPPA-TLLREALASIPS 342
Query: 243 SVLDSPIE 250
LD ++
Sbjct: 343 EFLDQKLD 350
>gi|443321686|ref|ZP_21050730.1| tRNA dihydrouridine synthase A [Gloeocapsa sp. PCC 73106]
gi|442788598|gb|ELR98287.1| tRNA dihydrouridine synthase A [Gloeocapsa sp. PCC 73106]
Length = 325
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 125/215 (58%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPSP+V G FG LML+P V A+ + +PV+VK RIGVDD D Y L
Sbjct: 80 NVGCPSPRVQS-GNFGACLMLNPSLVATAVEKMTKAVTIPVTVKHRIGVDDRDRYEDLTQ 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ +R F +H+RKA L G+SP ENR+IPPL+Y+ + L RDFP L +NGGI
Sbjct: 139 FVQTVAEAGCSR-FTVHARKAWLKGLSPKENRSIPPLRYDLVHRLKRDFPHLYIEINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ E+ L + VM+GRAAY +P++ L VD IYGA TR ++V + Y +
Sbjct: 198 TKLSEIQEQL-ELVDAVMIGRAAYDHPYF-LATVDREIYGAQYKPPTRPEIVAQMLPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L N+ + + + LLH F EPG+ +KR
Sbjct: 256 NCL----NSGFSLNSISRHLLHLFTGEPGSRAWKR 286
>gi|416893370|ref|ZP_11924558.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus ATCC
33389]
gi|347813924|gb|EGY30576.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus ATCC
33389]
Length = 327
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 138/242 (57%), Gaps = 19/242 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V E + + + +PV+VK RIG+DD DSY+ L +
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVAECVQQMQSAVQIPVTVKTRIGIDDFDSYDFLYN 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V + + FI+H+RKA L+G+SP +NR IPPL YE Y L RDFPDL ++NGGI
Sbjct: 155 FVQTVKQ-AGCQEFIVHARKAWLSGLSPKQNREIPPLDYERVYQLKRDFPDLLISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LGH+D A++ + +T RQ VE Y +
Sbjct: 214 KTIEEIQRHLQH-VDGVMVGREAYQNP-SLLGHIDQALFDPNAPIITPRQAVESMLPYIE 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
+ L G Y N+ +++ +L F + G ++R K A + +T F+
Sbjct: 272 SQLSQGVYLNH------IVRHMLGAFQNCKGARQWRRYLSENAYKEGAGIEVVETALGFV 325
Query: 234 EE 235
EE
Sbjct: 326 EE 327
>gi|421098451|ref|ZP_15559120.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii str.
200901122]
gi|410798414|gb|EKS00505.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii str.
200901122]
Length = 354
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 138/244 (56%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + A+ ++PV+VKCRIG+ ++ LC
Sbjct: 98 NVGCPSDRVR-EGNFGACLMETPEKVAELVYAMDASVSIPVTVKCRIGIPGKETLEDLCR 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + R FI+H+R A+L G+SPA+NR IPPL Y Y +L +FPDL +NGGI
Sbjct: 157 FIECVRQ-AGVRRFIVHARIAILGGLSPAQNRQIPPLHYAYVESLKEEFPDLLIEINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E+ L K VM+GRAAY+NP Y VD+ + S L+RR+++ + + Y +
Sbjct: 216 RTLAEMQDRL-KTNDGVMIGRAAYENP-YLFSKVDSLFFRDNSPSLSRREILLRMRDYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH E G F+R + + + L + + +P+
Sbjct: 274 EVVLKEKNGKPH--HALRHMLGLFHGEKGARSFRRILTERMYSAYS-SNLLSDAVQEVPN 330
Query: 243 SVLD 246
LD
Sbjct: 331 DSLD 334
>gi|254490145|ref|ZP_05103336.1| TIM-barrel protein, yjbN family [Methylophaga thiooxidans DMS010]
gi|224464631|gb|EEF80889.1| TIM-barrel protein, yjbN family [Methylophaga thiooxydans DMS010]
Length = 327
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 127/215 (59%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG L+ +P V E ++ + ++PV+VK R+G+D+HDSY L D
Sbjct: 97 NVGCPSDRVQS-GRFGACLLAEPDVVAEGVAAMQNQVSIPVTVKTRLGIDEHDSYEFLTD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KVS+ + FI+H+RKA L G+SP ENR +PPL Y+ Y + +DFP L +NGGI
Sbjct: 156 FIKKVSA-AGCDTFILHARKAWLKGLSPKENRDVPPLNYDRVYQVKQDFPHLHIDINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
NT++E L+ VM+GRA Y NP + L D AI+G +S LTR QVVE Y
Sbjct: 215 NTLEEAQLHLQH-VDGVMMGRAIYHNP-FLLAQADEAIFGHDASVLTRHQVVEAMLPY-- 270
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
I RP ++ + + +L F + G ++R
Sbjct: 271 -IEKRMAQGRP-LKSITRHMLGVFQGQAGARRWRR 303
>gi|359687045|ref|ZP_09257046.1| tRNA-dihydrouridine synthase [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418750942|ref|ZP_13307228.1| tRNA dihydrouridine synthase A [Leptospira licerasiae str. MMD4847]
gi|418756407|ref|ZP_13312595.1| tRNA dihydrouridine synthase A [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|384116078|gb|EIE02335.1| tRNA dihydrouridine synthase A [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|404273545|gb|EJZ40865.1| tRNA dihydrouridine synthase A [Leptospira licerasiae str. MMD4847]
Length = 349
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 140/247 (56%), Gaps = 9/247 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS KV G FG LM DP V + +S + + T++PV+VKCRIGV ++ L +
Sbjct: 97 NVGCPSDKVQ-EGNFGACLMKDPNKVADCISEMDSKTSIPVTVKCRIGVRGKETLEDLHE 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS+ + R IH+R A+L G+SPA+NRT+PPL+YE Y++ + FP LT LNGG+
Sbjct: 156 FVRSVST-AGARRITIHARIAILEGLSPAQNRTVPPLRYEDVYSIKKSFPGLTIELNGGV 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+V ++ + L K VM+GRAAY+NP + VD+ +G L+RR++ E Q Y
Sbjct: 215 KSVSDIRSHLDK-VDGVMIGRAAYENP-FLFSDVDSEFFGGEPLNLSRREIFESMQEYVS 272
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A T +P +++ LL FH G ++R + + L E + +IPD
Sbjct: 273 A--QTAEGEKPS--RILRHLLGAFHEIRGARSYRRILTEKMHSNPGPRLLL-EALESIPD 327
Query: 243 SVLDSPI 249
LD +
Sbjct: 328 EYLDRTL 334
>gi|407790626|ref|ZP_11137719.1| tRNA-dihydrouridine synthase A [Gallaecimonas xiamenensis 3-C-1]
gi|407203749|gb|EKE73734.1| tRNA-dihydrouridine synthase A [Gallaecimonas xiamenensis 3-C-1]
Length = 323
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 129/217 (59%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + + + ++PV+VK RIG+DD DSY L D
Sbjct: 89 NVGCPSDRVQ-NGRFGACLMAEPTLVADCVKAMKDAVSIPVTVKSRIGIDDMDSYPFLVD 147
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +S + FI+H+RKA L+G+SP ENR IPPL Y Y L +DFP+L +NGGI
Sbjct: 148 FVSTISE-AGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQLKKDFPNLHIGINGGI 206
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+DE+ L AH VMVGR AYQNP Y L VD A+YG S+ ++RR VVE Y
Sbjct: 207 KTLDEMQGHL---AHVDSVMVGREAYQNP-YLLAEVDAALYGVDSAMVSRRAVVEAMFPY 262
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+A L G H+ + +L F+ + G ++R
Sbjct: 263 IEAELAA-GARLNHIS---RHMLGLFNGQTGGRRWRR 295
>gi|425064138|ref|ZP_18467263.1| tRNA dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida X73]
gi|404381731|gb|EJZ78199.1| tRNA dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida X73]
Length = 327
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 136/238 (57%), Gaps = 19/238 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + +S + ++PV+VK RIG+DD DSY LC+F+
Sbjct: 98 GCPSDRVQ-NGMFGACLMAKADLVADCVSAMQTEVSIPVTVKTRIGIDDLDSYEFLCEFV 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + FIIH+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI T
Sbjct: 157 QKVHE-AGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLRMSINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG++D A++ +T R+ VEK Y +
Sbjct: 216 LEEMQQHLQY-MDGVMVGREAYQNP-SLLGYIDQALFDPTCPVVTPREAVEKMFPYIEQQ 273
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ V++ +L F S G ++R KA A + + SF+
Sbjct: 274 LSQGVYLNH------VVRHMLGAFQSCKGARQWRRYLSENAHKAGAGLEVVEKALSFV 325
>gi|421264167|ref|ZP_15715172.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|401688632|gb|EJS84195.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. P52VAC]
Length = 327
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 136/238 (57%), Gaps = 19/238 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + +S + ++PV+VK RIG+DD DSY LC+F+
Sbjct: 98 GCPSDRVQ-NGMFGACLMAKADLVADCVSAMQTEVSIPVTVKTRIGIDDLDSYEFLCEFV 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + FIIH+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI T
Sbjct: 157 QKVHE-AGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLRMSINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG++D A++ +T R+ VEK Y +
Sbjct: 216 LEEMQQHLQY-MDGVMVGREAYQNP-SLLGYIDQALFDPTCPVVTPREAVEKMFPYIEQQ 273
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ V++ +L F S G ++R KA A + + SF+
Sbjct: 274 LSQGVYLNH------VVRHMLGAFQSCKGARQWRRYLSENAHKAGAGLEVVEKALSFV 325
>gi|15603283|ref|NP_246357.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. Pm70]
gi|38605041|sp|Q9CL29.1|DUSA_PASMU RecName: Full=tRNA-dihydrouridine synthase A
gi|12721794|gb|AAK03502.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 327
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 136/238 (57%), Gaps = 19/238 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + +S + ++PV+VK RIG+DD DSY LC+F+
Sbjct: 98 GCPSDRVQ-NGMFGACLMAKADLVADCVSAMQTEVSIPVTVKTRIGIDDLDSYEFLCEFV 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + FIIH+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI T
Sbjct: 157 QKVHE-AGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLLMSINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG++D A++ +T R+ VEK Y +
Sbjct: 216 LEEMQQHLQY-MDGVMVGREAYQNP-SLLGYIDQALFDPTCPVVTPREAVEKMFPYIEQQ 273
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ V++ +L F S G ++R KA A + + SF+
Sbjct: 274 LSQGVYLNH------VVRHMLGAFQSCKGARQWRRYLSENAHKAGAGLEVVEKALSFV 325
>gi|417851442|ref|ZP_12497187.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338219514|gb|EGP05163.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 327
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 136/238 (57%), Gaps = 19/238 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + +S + ++PV+VK RIG+DD DSY LC+F+
Sbjct: 98 GCPSDRVQ-NGMFGACLMAKADLVADCVSAMQTEVSIPVTVKTRIGIDDLDSYEFLCEFV 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + FIIH+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI T
Sbjct: 157 QKVHE-AGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLRMSINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG++D A++ +T R+ VEK Y +
Sbjct: 216 LEEMQQHLQY-MDGVMVGREAYQNP-SLLGYIDQALFDPTCPVVTPREAVEKMFPYIEQQ 273
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ V++ +L F S G ++R KA A + + SF+
Sbjct: 274 LSQGVYLNH------VVRHMLGAFQSCKGARQWRRYLSENAHKAGAGLEVVEKALSFV 325
>gi|429220848|ref|YP_007182492.1| tRNA dihydrouridine synthase A [Deinococcus peraridilitoris DSM
19664]
gi|429131711|gb|AFZ68726.1| tRNA dihydrouridine synthase A [Deinococcus peraridilitoris DSM
19664]
Length = 339
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 133/247 (53%), Gaps = 12/247 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P V + + A VPV+VK R+G+DD DSY L
Sbjct: 93 NVGCPSDRVQS-GMFGACLMAHPDLVARCVEAMRAVVGVPVTVKHRLGIDDLDSYEHLTR 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS + FI+H+RKA L+G+SP ENR IPPL+YE L DFP LT LNGGI
Sbjct: 152 FVQTVSG-AGCETFIVHARKAWLSGLSPKENREIPPLRYEVVRQLKVDFPHLTVVLNGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ A L + A VM+GR AYQNP Y L D ++G + TRR+VVE Y +
Sbjct: 211 KSLEDSKAHL-EWADGVMIGREAYQNP-YMLALADAVLFGDDAPARTRREVVEALLPYVE 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCK--TVKSFLEETIVAI 240
L ++ + + +L F + G +KR Q C+ L + I
Sbjct: 269 VQLA----RDVYLSRITRHILGLFAGQSGARAWKRTLSE--QACQPGADAGVLRAALSQI 322
Query: 241 PDSVLDS 247
PDSVLD+
Sbjct: 323 PDSVLDA 329
>gi|386390228|ref|ZP_10075022.1| tRNA dihydrouridine synthase A [Haemophilus paraphrohaemolyticus
HK411]
gi|385693538|gb|EIG24179.1| tRNA dihydrouridine synthase A [Haemophilus paraphrohaemolyticus
HK411]
Length = 326
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 135/243 (55%), Gaps = 20/243 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + +PV+VK RIG+DD DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGMFGACLMGKADLVADCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + S FI+H+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI
Sbjct: 152 FIEKVQAYS--NDFIVHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLNISINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L + VMVGR AYQNP LG +D+ I+G +T R+ VEK Y +
Sbjct: 210 KTIEEIKYHL-QFVDGVMVGREAYQNP-SLLGEIDSQIFGENRPLVTAREAVEKMLPYIE 267
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ +++ +L F + G ++R KA A + F+
Sbjct: 268 KELAKGVYLNH------IVRHMLGAFQNCKGARQWRRYLSENACKAGANVSVVEEALKFV 321
Query: 234 EET 236
E T
Sbjct: 322 ENT 324
>gi|325576762|ref|ZP_08147377.1| tRNA-dihydrouridine synthase A [Haemophilus parainfluenzae ATCC
33392]
gi|325160968|gb|EGC73086.1| tRNA-dihydrouridine synthase A [Haemophilus parainfluenzae ATCC
33392]
Length = 328
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 138/241 (57%), Gaps = 19/241 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V E ++ + N+PV+VK RIG+DD DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVAECIAEMQRVVNIPVTVKTRIGIDDLDSYQFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + + FI+H+RKA L+G+SP ENR IPPL Y+ Y L +DFP LT +NGGI
Sbjct: 155 FIKKVHH-AGCQEFIVHARKAWLSGLSPKENREIPPLDYDRVYQLKKDFPQLTIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L + VMVGR AYQNP LG+VD ++ A + +T +Q VE Y +
Sbjct: 214 KTIEEMKHHL-QFVDGVMVGREAYQNP-SLLGYVDQMLFDANADIVTPKQAVEAMFPYIE 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ +++ +L F + G ++R K A + +T SF+
Sbjct: 272 KQLSQGVYLNH------IVRHMLGAFQNCKGARQWRRYLSENAFKQGAGIEVVETALSFV 325
Query: 234 E 234
E
Sbjct: 326 E 326
>gi|383311265|ref|YP_005364075.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. HN06]
gi|386835284|ref|YP_006240601.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. 3480]
gi|380872537|gb|AFF24904.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. HN06]
gi|385201987|gb|AFI46842.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. 3480]
Length = 327
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 136/238 (57%), Gaps = 19/238 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + +S + ++PV+VK RIG+DD DSY LC+F+
Sbjct: 98 GCPSDRVQ-NGMFGACLMAKADLVADCVSAMQTEVSIPVTVKTRIGIDDLDSYEFLCEFV 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + FIIH+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI T
Sbjct: 157 QKVHE-AGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLHMSINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG++D A++ +T R+ VEK Y +
Sbjct: 216 LEEMQQHLQY-MDGVMVGREAYQNP-SLLGYIDQALFDPTCPVVTPREAVEKMFPYIEQQ 273
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ V++ +L F S G ++R KA A + + SF+
Sbjct: 274 LSQGVYLNH------VVRHMLGAFQSCKGARQWRRYLSENAHKAGAGLEVVEKALSFV 325
>gi|116329329|ref|YP_799049.1| tRNA-dihydrouridine synthase A [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116330067|ref|YP_799785.1| tRNA-dihydrouridine synthase A [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116122073|gb|ABJ80116.1| tRNA-dihydrouridine synthase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116123756|gb|ABJ75027.1| tRNA-dihydrouridine synthase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 339
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 136/244 (55%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + N ++PV+VKCRIG+ ++ LC
Sbjct: 98 NVGCPSDRVR-EGNFGACLMETPERVAELVCAMDGNVSIPVTVKCRIGISGKETLEDLCR 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + R FI+H+R A+L G+SPA+NR IPPL+Y + +L ++FPDL +NGGI
Sbjct: 157 FIECVRQ-AGVRRFIVHARIAILGGLSPAQNRQIPPLRYAHVESLKKEFPDLLIEINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E+ L K VM+GRAAY+ P Y VD+ + S L+RR+V+ + + Y +
Sbjct: 216 RTLAEMQDRL-KTNDGVMIGRAAYETP-YLFSEVDSLFFHDNSPSLSRREVLLRMRDYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH E G F+R + L + I IP+
Sbjct: 274 EVVLKEKNGKPH--HALRHMLGLFHGEKGARSFRRVVTERMYYDYS-SDLLLDAIQEIPN 330
Query: 243 SVLD 246
LD
Sbjct: 331 DTLD 334
>gi|322515077|ref|ZP_08068085.1| tRNA dihydrouridine synthase A [Actinobacillus ureae ATCC 25976]
gi|322118957|gb|EFX91134.1| tRNA dihydrouridine synthase A [Actinobacillus ureae ATCC 25976]
Length = 323
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 134/242 (55%), Gaps = 20/242 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + +PV+VK RIG+DD DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGMFGACLMAKANLVADCIKAMQDTVQIPVTVKHRIGIDDLDSYEFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV S FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 152 FIEKVQPYS--NDFIVHARKAWLSGLSPKQNREIPPLDYERVYQLKRDFPHLNISINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
TVDE+ L VMVGR AYQNP LG +D+ I+G +T R+ VEK Y +
Sbjct: 210 KTVDEIKQHL-VFVDGVMVGREAYQNP-SLLGEIDSQIFGENRPLVTAREAVEKMLPYIE 267
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
A G Y N+ +++ +L F + G ++R K A + + SF+
Sbjct: 268 AQTQKGVYLNH------IVRHMLGAFQNCKGARQWRRHLSENATKQGAGVEVVEQALSFV 321
Query: 234 EE 235
++
Sbjct: 322 QK 323
>gi|170077369|ref|YP_001734007.1| dihydrouridine synthase A [Synechococcus sp. PCC 7002]
gi|169885038|gb|ACA98751.1| Dihydrouridine synthase A [Synechococcus sp. PCC 7002]
Length = 344
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 131/241 (54%), Gaps = 8/241 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPSP+V G FG LM P+ V + ++ + N+PV+VK RIGVD+ DSY LC
Sbjct: 98 NVGCPSPRVQ-QGNFGACLMTQPELVADCVAAMQGAVNIPVTVKHRIGVDEQDSYADLCR 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS+ R F +H+RKA L G+SP ENRT+PPL+Y Y L +DFP L +NGGI
Sbjct: 157 FIEIVSATGCDR-FSVHARKAWLQGLSPKENRTVPPLRYADVYRLKQDFPHLWIEINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++ + L + VMVGRAAY NP Y VD IYG +R ++VE+ Y +
Sbjct: 216 TTLEHIQTHLTQ-VDAVMVGRAAYDNP-YLFATVDRDIYGEAIQPKSRHEIVEEMLPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
T + H + + +L F +PG +KR + + +E+ + +
Sbjct: 274 R--ATKAGVKLH--SISRHMLSLFLGQPGTKAWKRFITEEGRGTTVGREIIEQALALVSQ 329
Query: 243 S 243
+
Sbjct: 330 T 330
>gi|307249353|ref|ZP_07531347.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306858647|gb|EFM90709.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 329
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 134/241 (55%), Gaps = 16/241 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + +PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMAKADLVADCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV S +FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 156 FIEKVQPYS--NNFIVHARKAWLSGLSPKQNREIPPLDYERVYQLKRDFPHLNISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
TV+E+ L VMVGR AYQNP LG +D+ I+G +T R+ VEK Y
Sbjct: 214 KTVEEIKRHL-AFVDGVMVGREAYQNP-SLLGEIDSQIFGENRPLVTAREAVEKMLPY-- 269
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
+ T ++ +++ +L F + G ++R K A + + SF++E
Sbjct: 270 --IETQTKKGVYLNHIVRHMLGAFQNCKGARQWRRHLSENATKQGAGVEVVEQALSFVQE 327
Query: 236 T 236
+
Sbjct: 328 S 328
>gi|256821809|ref|YP_003145772.1| yjbN family TIM-barrel protein [Kangiella koreensis DSM 16069]
gi|256795348|gb|ACV26004.1| TIM-barrel protein, yjbN family [Kangiella koreensis DSM 16069]
Length = 330
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 131/215 (60%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E MS +A +VPV+VK RIG+D+ DSY L
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMAEPELVAECMSAMANVVDVPVTVKSRIGIDELDSYEHLHH 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V S + + FIIH+RKA L+G+SP +NR IPPL+Y+ Y + +DFP+L +NGG+
Sbjct: 152 FINTVQS-AGVKTFIIHARKAWLSGLSPKQNREIPPLRYDIAYQVKKDFPELEIIVNGGV 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
NT+D+ + K A VM+GR AY NP++ L VD YG +R ++ +Y +Y
Sbjct: 211 NTLDQAEDHM-KHADGVMIGREAYHNPYF-LAEVDNRFYGKDYDIPSRIEIAREYMVYIQ 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ L + ++ + + +L F ++P L++R
Sbjct: 269 SQL----DQDVYLGHMTRHILGLFFAQPKGKLWRR 299
>gi|407769501|ref|ZP_11116876.1| TIM-barrel protein, yjbN family [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407287423|gb|EKF12904.1| TIM-barrel protein, yjbN family [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 331
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 120/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G FG LM P V + + A +N V+VK RIG+DD + Y L
Sbjct: 91 NCGCPSDRVQ-NGAFGACLMATPDVVANCVKAMIATSNASVTVKNRIGIDDQEDYPSLKR 149
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + R FI+H+RKA LNG+SP ENR +PPLKYE Y L ++ P+L +NGGI
Sbjct: 150 FVETVAD-AGCRTFIVHARKAWLNGLSPKENREVPPLKYELVYQLKQELPELEILINGGI 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE L++ VM+GR AYQNP Y L VD YG + L+R QV E Y D
Sbjct: 209 KTLDETEEHLKQ-VDGVMIGREAYQNP-YVLSDVDRRFYGDDTKPLSRHQVAEAMLPYID 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + H V + +L F G ++R
Sbjct: 267 EHLKSNNGTLGH---VTRHMLGLFQQMRGAKQWRR 298
>gi|443327372|ref|ZP_21055998.1| tRNA dihydrouridine synthase A [Xenococcus sp. PCC 7305]
gi|442792994|gb|ELS02455.1| tRNA dihydrouridine synthase A [Xenococcus sp. PCC 7305]
Length = 311
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 131/239 (54%), Gaps = 12/239 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V A+S + +PV+VK RIG+DD D Y + +
Sbjct: 79 NVGCPSSRVQS-GNFGACLMAKPQLVAAAISAMQKAVTIPVTVKHRIGIDDRDRYEDMAE 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ S + RHF +H+RKA L G+SP ENR +PPL+YE Y L R+FP L +NGGI
Sbjct: 138 FV-RIVSEAGCRHFTVHARKAWLKGLSPKENRNVPPLRYEDVYRLKREFPHLFIEINGGI 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ +V L K VM+GRAAY NP Y VD Y + ++ R+ +VE Y D
Sbjct: 197 VELKQVTECL-KSVDAVMIGRAAYDNP-YLFATVDQEFYDSQAAIPRRQDIVEAMLPYID 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK-ADAAF---QTCKTVKSFLEETI 237
+ G + + + +L F +PG +KR + AF + T+K+ L E I
Sbjct: 255 HWMSRGG----RLNSITRHMLQLFARQPGTKAWKRYISQNAFLPNSSSTTIKNALAEVI 309
>gi|254282686|ref|ZP_04957654.1| tRNA-dihydrouridine synthase A [gamma proteobacterium NOR51-B]
gi|219678889|gb|EED35238.1| tRNA-dihydrouridine synthase A [gamma proteobacterium NOR51-B]
Length = 311
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 125/215 (58%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G FG LM + + V + ++ + + +PV+VK RIG+D +SYN+L D
Sbjct: 79 NCGCPSDRVQ-NGRFGACLMAEAELVRDCVAAMCDASALPVTVKHRIGIDHQESYNELRD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+S R FI+H+RKA L G+SP ENR IPPL Y + Y L +DFP LT LNGG+
Sbjct: 138 FVGTVAS-GGARVFIVHARKAWLQGLSPKENREIPPLNYPWVYRLKQDFPHLTIVLNGGV 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ + L K VM+GRAAYQNPW L VD A++G G +R V+E Y D
Sbjct: 197 TDIPACESHLGK-VDGVMLGRAAYQNPWL-LASVDQALFGDAPRGQSRASVLEALMPYID 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + V + +L + PG F+R
Sbjct: 255 RELARGGR----LNHVTRHVLGLYQGIPGGKRFRR 285
>gi|119776187|ref|YP_928927.1| tRNA-dihydrouridine synthase A [Shewanella amazonensis SB2B]
gi|119768687|gb|ABM01258.1| TIM-barrel protein, yjbN family [Shewanella amazonensis SB2B]
Length = 326
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 128/215 (59%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +PK V E + + +VPV+VK RIG+D+ DSY L D
Sbjct: 92 NVGCPSDRVQ-NGRFGACLMAEPKLVAECVDAMRQQVSVPVTVKTRIGIDEQDSYGFLTD 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS+ + FIIH+RKA L G+SP ENR IPPL YE Y L RD+P L+ ++NGG+
Sbjct: 151 FVETVSA-AGCDTFIIHARKAWLQGLSPKENREIPPLDYERVYQLKRDYPQLSISINGGV 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L + VMVGR AYQNP Y L VDT + G P+ +R +V+ K Y
Sbjct: 210 TSIEQAKTHLAQ-LDGVMVGREAYQNP-YILASVDTELCGKPAVVSSREEVIGKLLPY-- 265
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+G + + + + + ++ + PG+ ++R
Sbjct: 266 --IGKHLADGGRLNHISRHIIGLYQGLPGSRAWRR 298
>gi|145548359|ref|XP_001459860.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427687|emb|CAK92463.1| unnamed protein product [Paramecium tetraurelia]
Length = 346
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 125/215 (58%), Gaps = 5/215 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P V + M + +P ++KCR+GVD+ DSY + +
Sbjct: 97 NVGCPSERVQD-GAFGACLMKEPHLVAQCMKKMKEAVKIPCTLKCRLGVDNLDSYEFVRN 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V HFI+H+RKA L G++P ENRT+PPLKY++ Y L ++FP++ FTLNGGI
Sbjct: 156 FVEIVYKEGEVNHFIMHARKAFLKGLNPHENRTVPPLKYDWVYQLKKEFPEIKFTLNGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ ++ L +M+GR+A++NPW D YG + R++++E+Y + +
Sbjct: 216 KCTEHIDQVL-PNVDGIMIGRSAHENPW-MFSDFDRLYYGGENQNYNRKEILEQYAEFVE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
T + + +KP+++ F+ E N +++
Sbjct: 274 EKRAT--GCKVSTQMCVKPIINLFNGESNNKRYRQ 306
>gi|345429046|ref|YP_004822163.1| tRNA-dihydrouridine synthase A [Haemophilus parainfluenzae T3T1]
gi|301155106|emb|CBW14569.1| tRNA-dihydrouridine synthase A [Haemophilus parainfluenzae T3T1]
Length = 328
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 137/241 (56%), Gaps = 19/241 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V E ++ + N+PV+VK RIG+DD DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVAECIAEMQRVVNIPVTVKTRIGIDDLDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FI+H+RKA L+G+SP ENR IPPL Y+ Y L +DFP LT +NGGI
Sbjct: 155 FIEKVHH-DGCQEFIVHARKAWLSGLSPKENREIPPLDYDRVYQLKKDFPQLTIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L + VMVGR AYQNP LG++D ++ A + +T +Q VE Y +
Sbjct: 214 KTIEEMKYHL-QFVDGVMVGREAYQNP-SLLGYIDQMLFDANADIVTPKQAVEAMFPYIE 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ +++ +L F + G ++R K A + +T SF+
Sbjct: 272 KQLSQGVYLNH------IVRHMLGAFQNCKGARQWRRYLSENAFKQGAGIEVVETALSFV 325
Query: 234 E 234
E
Sbjct: 326 E 326
>gi|425066300|ref|ZP_18469420.1| tRNA dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida P1059]
gi|404381885|gb|EJZ78350.1| tRNA dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida P1059]
Length = 327
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 135/238 (56%), Gaps = 19/238 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V +S + ++PV+VK RIG+DD DSY LC+F+
Sbjct: 98 GCPSDRVQ-NGMFGACLMAKADLVANCVSAMQTEVSIPVTVKTRIGIDDLDSYEFLCEFV 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + FIIH+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI T
Sbjct: 157 QKVHE-AGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLHMSINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG++D A++ +T R+ VEK Y +
Sbjct: 216 LEEMQQHLQY-MDGVMVGREAYQNP-SLLGYIDQALFDPTCPVVTPREAVEKMFPYIEQQ 273
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ V++ +L F S G ++R KA A + + SF+
Sbjct: 274 LSQGVYLNH------VVRHMLGAFQSCKGARQWRRYLSENAHKAGAGLEVVEKALSFV 325
>gi|392546833|ref|ZP_10293970.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas rubra ATCC 29570]
Length = 337
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 135/241 (56%), Gaps = 12/241 (4%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P+ V E ++ + ++PV+VK RIG+D+ DSY L I
Sbjct: 107 GCPSDRVQ-NGRFGACLMAEPELVAECVAAMKGEVSIPVTVKTRIGIDEQDSYEFLTRLI 165
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
S + FIIH+RKA L G+SP ENR IPPL Y Y L +D+ DL ++NGG+ T
Sbjct: 166 -DASKTAGCDDFIIHARKAWLQGLSPKENREIPPLDYPRVYKLKQDYSDLHISINGGVKT 224
Query: 125 VDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++E L AH VM+GR AY NP + L VD+A+YGAP+ TR QVV Y +
Sbjct: 225 IEECQHHL---AHLDGVMIGREAYSNP-FMLAEVDSALYGAPAFTQTRHQVVRSMYDYIE 280
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A + + G N H + + +L F ++PG F+R S +E+ + +P+
Sbjct: 281 AEM-SKGANFWH---IARHMLGIFQNQPGARGFRRHLSENGHGKSADISVMEKALTFVPE 336
Query: 243 S 243
Sbjct: 337 Q 337
>gi|428166569|gb|EKX35542.1| hypothetical protein GUITHDRAFT_146376 [Guillardia theta CCMP2712]
Length = 393
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 138/270 (51%), Gaps = 52/270 (19%)
Query: 3 SCGCPSPKVAGHGC---FGVSLMLDPKFVGEAMSVIA-ANTNVPVSVKCRIGVDDHDSYN 58
+CGCPS A C +G SLM DP V + +A A+ N PVSVKCR+G ++ + Y
Sbjct: 86 NCGCPS--AAATCCSQRYGASLMHDPHGVATCLRAMARASPNAPVSVKCRLGTNERNGYK 143
Query: 59 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 118
L DFI VSS + RHFIIHSR+ +L G +P +NRTIPPL+ + + L +DFPDL FT
Sbjct: 144 LLSDFISIVSSGAGVRHFIIHSRECVLGGFTPKQNRTIPPLRPRWTHQLKQDFPDLHFTY 203
Query: 119 NGGINTVDEVN-----------------AALRK------------------GAHHVMVGR 143
NGGI +++ A L++ VM+GR
Sbjct: 204 NGGIKSLEMAGRHLLAPHNGIIAEYGSYAGLKEHESSGNEKADEFQWDDLPAVDGVMIGR 263
Query: 144 AAYQNPWYTLGHVDTAIYGAPSS-GLTRRQVVEKYQIYGDAILGTYGNNRPH-------- 194
AYQ PW L D I+G + GLTRR+++E Y + G+ ++ Y N H
Sbjct: 264 EAYQRPWL-LREADVKIFGEDRNPGLTRRKILEDYIVLGEELMEKYSNIHGHRKKGTPGY 322
Query: 195 -VRDVMKPLLHFFHSEPGNGLFKRKADAAF 223
R+++KP+ F +E G ++R D +
Sbjct: 323 STRNLLKPVFGLFATERGGREWRRILDKEW 352
>gi|343515823|ref|ZP_08752871.1| tRNA-dihydrouridine synthase A [Vibrio sp. N418]
gi|342797458|gb|EGU33106.1| tRNA-dihydrouridine synthase A [Vibrio sp. N418]
Length = 346
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 130/242 (53%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DDHDSY L D
Sbjct: 110 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDVVDIPVTVKTRIGIDDHDSYEFLTD 168
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF L +NGG+
Sbjct: 169 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFAHLVIAVNGGV 228
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ EV L K VMVGR AYQNP Y L VD I+G R QVVE+ Y +
Sbjct: 229 KTLQEVQEHL-KHLDGVMVGREAYQNP-YILAEVDQLIFGLDKPVKKRTQVVEEMYPYIE 286
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L +N ++ + + +L F + PG ++R + +E + IP
Sbjct: 287 QQL----SNGAYLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGSGIEVVEAALAKIPK 342
Query: 243 SV 244
+
Sbjct: 343 EL 344
>gi|209694000|ref|YP_002261928.1| tRNA-dihydrouridine synthase A [Aliivibrio salmonicida LFI1238]
gi|208007951|emb|CAQ78084.1| tRNA-dihydrouridine synthase A [Aliivibrio salmonicida LFI1238]
Length = 338
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 123/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM DP+ V E ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 102 NVGCPSDRVQ-NGRFGACLMADPELVAECIAEMKAVVDIPVTVKTRIGIDDQDSYEFLTK 160
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V F IH+RKA L+G+SP ENR IPPL Y Y + +DFP L +NGGI
Sbjct: 161 FVSTVHEKGGCDQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKKDFPQLIIAVNGGI 220
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T++E L AH VM+GR AYQ+P Y L VD ++G+ RR++VE Y
Sbjct: 221 KTLEEAKEHL---AHLDGVMIGREAYQSP-YLLAEVDQQLFGSDKPIKKRREIVESMYPY 276
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ L N H+ + + +L F S PG ++R
Sbjct: 277 IERQL----ENGAHLGHITRHMLGLFQSMPGARQWRR 309
>gi|407802431|ref|ZP_11149272.1| tRNA-dihydrouridine synthase A [Alcanivorax sp. W11-5]
gi|407023586|gb|EKE35332.1| tRNA-dihydrouridine synthase A [Alcanivorax sp. W11-5]
Length = 311
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 130/239 (54%), Gaps = 8/239 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P V E ++ + A +VPV+VK RIG+DD D Y L
Sbjct: 80 NVGCPSDRVQS-GRFGACLMAEPVLVAECVAAMQAAVSVPVTVKSRIGIDDQDEYAFLHT 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + + F IH+RKA+L+G+SP ENR IPPL YE YA+ +DFPD LNGGI
Sbjct: 139 FIDTVRA-AGCHSFTIHARKAILSGLSPKENREIPPLIYERAYAVKQDFPDCEIILNGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++V L + VM+GR AYQNPW+ L D ++ +P+ R +VE + Y
Sbjct: 198 RNMEQVAEHLHQ-VDGVMIGREAYQNPWF-LAEADPVLFNSPAPFTDRHALVEAFMPY-- 253
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L H + V++ +L+ F S PG F+R + L E + +P
Sbjct: 254 --LERRYAEGVHPKHVLRHVLNLFQSVPGARAFRRHLSTRAHLPDATPAVLLEALQQVP 310
>gi|376002407|ref|ZP_09780241.1| tRNA-dihydrouridine synthase A [Arthrospira sp. PCC 8005]
gi|375329216|emb|CCE15994.1| tRNA-dihydrouridine synthase A [Arthrospira sp. PCC 8005]
Length = 334
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 125/215 (58%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V EA+S + N+PV+VK RIG+D+ D Y +
Sbjct: 104 NVGCPSARVQ-NGNFGACLMAEPERVAEAISAMKKAVNIPVTVKHRIGIDNRDRYEDMAA 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V + S + F +H+RKA L G+SP +NR IPPL+Y + L +FPDLT +NGG
Sbjct: 163 FV-RVVAASGCQRFTVHARKAWLQGLSPKDNRNIPPLRYGDVHRLKAEFPDLTIEINGGF 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++V L K VM+GRAAY NP Y D IYG + TR QVVE+ Y +
Sbjct: 222 TTLEQVKQQLTK-VDAVMIGRAAYDNP-YLFAIADREIYGENINPPTRHQVVEQMLPYIE 279
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + V++ +L F +PG +KR
Sbjct: 280 NWLSQGG----RLNSVVRHILQLFAGQPGTKAWKR 310
>gi|407783743|ref|ZP_11130938.1| tRNA-dihydrouridine synthase A [Oceanibaculum indicum P24]
gi|407200178|gb|EKE70189.1| tRNA-dihydrouridine synthase A [Oceanibaculum indicum P24]
Length = 333
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 128/217 (58%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + A T++PV+VK RIGVD+ + Y L
Sbjct: 93 NCGCPSDRVQ-KGRFGACLMAEPETVAAGVKAMIAATSLPVTVKSRIGVDEMEDYADLKR 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ + R FI+H+RKA L G+SP ENR IPPL+YE Y L ++ P+LT LNGG+
Sbjct: 152 FIETVAD-AGCRSFIVHARKAWLKGLSPKENREIPPLRYELVYRLKQELPELTIVLNGGV 210
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+D+ A L AH VM+GRAAYQ P Y L D +GA + +RRQV+E + Y
Sbjct: 211 ATLDQAAAHL---AHVDGVMIGRAAYQEP-YMLADADRRFFGASAPAPSRRQVLEAFLPY 266
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ L G H + + +L ++ PG F+R
Sbjct: 267 VERELAQ-GTPLAH---MTRHILGLYNGLPGARAFRR 299
>gi|407692865|ref|YP_006817654.1| tRNA-dihydrouridine synthase A [Actinobacillus suis H91-0380]
gi|407388922|gb|AFU19415.1| tRNA-dihydrouridine synthase A [Actinobacillus suis H91-0380]
Length = 323
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 133/242 (54%), Gaps = 20/242 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + +PV+VK RIG+DD DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGMFGACLMAKADLVADCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV S FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 152 FIEKVQPYS--NDFIVHARKAWLSGLSPKQNREIPPLDYERVYQLKRDFPHLNISINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
TVDE+ L VMVGR AYQNP LG +D+ I+ +T R+ VEK Y +
Sbjct: 210 KTVDEIKQHL-AFVDGVMVGREAYQNP-SLLGEIDSQIFDENRPLVTAREAVEKMLPYIE 267
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
A G Y N+ +++ +L F + G ++R K A + + SF+
Sbjct: 268 AQTQKGVYLNH------IVRHMLGAFQNCKGARQWRRHLSENATKQGAGVEVVEQALSFV 321
Query: 234 EE 235
+E
Sbjct: 322 QE 323
>gi|392307186|ref|ZP_10269720.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas citrea NCIMB
1889]
Length = 337
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 131/240 (54%), Gaps = 12/240 (5%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P+ V E ++ + A +PV+VK RIG+D+ DSY L I
Sbjct: 108 GCPSDRVQ-NGRFGACLMAEPQLVAECVAAMKAEVEIPVTVKTRIGIDEQDSYEFLTALI 166
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+ S FIIH+RKA L G+SP ENR +PPL Y Y L +DF DL ++NGG+ T
Sbjct: 167 -EASQQVGCDDFIIHARKAWLKGLSPKENREVPPLDYPRVYQLKKDFADLHISINGGVKT 225
Query: 125 VDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+D+ L AH VM+GR AY NP Y L VD +YG P+ +R +VV Y +
Sbjct: 226 LDDCQQHL---AHLDGVMIGREAYSNP-YMLSQVDELLYGEPAFTQSRHEVVRSMYDYFE 281
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ T G N H + + +L F S+PG F+R S +E+ + +P+
Sbjct: 282 VQM-TQGANFWH---IARHMLGIFQSQPGGRAFRRHLSENGHKQGADISVMEKALACVPE 337
>gi|119946739|ref|YP_944419.1| tRNA-dihydrouridine synthase A [Psychromonas ingrahamii 37]
gi|119865343|gb|ABM04820.1| tRNA-U16,U17-dihydrouridine synthase [Psychromonas ingrahamii 37]
Length = 330
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 125/213 (58%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + + VG+A+ + T +PVSVK RIG+DD DSY LCDF+
Sbjct: 100 GCPSDRVQ-NGRFGACLMSEGELVGDAIKAMKDATGLPVSVKTRIGIDDLDSYAFLCDFV 158
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV+ F++H+RKA L+G+SP +NR +PPL YE Y L +DFP LT +NGGI T
Sbjct: 159 GKVAE-KGCDTFVVHARKAWLSGLSPKQNRDVPPLDYERVYQLKKDFPQLTIAINGGIKT 217
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+DE L+ VM+GR Y NP Y L VD ++ LTR +V+EK Y +
Sbjct: 218 LDECETHLQY-LDGVMLGREIYTNP-YLLSSVDQRLFAGNEKILTRFEVLEKMYPYIEQQ 275
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N + + V + +L F PG ++R
Sbjct: 276 L----SNGAYFKHVARHMLGLFQGLPGARAWRR 304
>gi|163749318|ref|ZP_02156567.1| TIM-barrel protein, yjbN family [Shewanella benthica KT99]
gi|161331037|gb|EDQ01963.1| TIM-barrel protein, yjbN family [Shewanella benthica KT99]
Length = 310
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 124/213 (58%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LM DPK V E ++ + ++PV+VK RIG+DD DSY L +F+
Sbjct: 81 GCPSDRVQS-GRFGACLMADPKLVAECVTAMKQVVDIPVTVKTRIGIDDQDSYEFLTEFV 139
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS + FI+H+RKA L G+SP +NR IPPL Y+ Y L +D+P L ++NGG+ T
Sbjct: 140 DTVSDVG-CDTFIVHARKAWLQGLSPKQNREIPPLDYQRVYRLKQDYPKLHISINGGVKT 198
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+DE L VMVGR AYQNP Y L VD + G+ S L+R V+EK+ Y +
Sbjct: 199 LDECRQHLLH-IDGVMVGREAYQNP-YILAEVDQRLCGSNKSVLSRDAVLEKFIPYIEKH 256
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + + + + F EPG+ ++R
Sbjct: 257 LVEGG----RLNHITRHMTGMFQGEPGSRAWRR 285
>gi|258625982|ref|ZP_05720847.1| NifR3/Smm1 family protein [Vibrio mimicus VM603]
gi|258581730|gb|EEW06614.1| NifR3/Smm1 family protein [Vibrio mimicus VM603]
Length = 339
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + + ++PV+VK RIG+DD DSY L
Sbjct: 102 NVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMRSVVDIPVTVKTRIGIDDQDSYEFLTQ 160
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 161 FISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 220
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 221 KTLEEAQQHLQY-LDGVMIGREAYQNP-YLLAEVDQQIFGLDTPVKKRSQVIHEMMPYIE 278
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 279 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKSGAGLEVVEQALAKIP 333
>gi|37681156|ref|NP_935765.1| tRNA-dihydrouridine synthase A [Vibrio vulnificus YJ016]
gi|326423833|ref|NP_760320.2| tRNA dihydrouridine synthase A [Vibrio vulnificus CMCP6]
gi|38604852|sp|Q8CWK7.2|DUSA_VIBVU RecName: Full=tRNA-dihydrouridine synthase A
gi|37199907|dbj|BAC95736.1| NifR3/Smm1 family protein [Vibrio vulnificus YJ016]
gi|319999203|gb|AAO09847.2| tRNA dihydrouridine synthase A [Vibrio vulnificus CMCP6]
Length = 326
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 133/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKEVVDIPVTVKTRIGIDDQDSYEFLTD 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 149 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLTIAINGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQ+P Y L VD ++G+ S RRQ+VE+ Y +
Sbjct: 209 KSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSQSPIKKRRQIVEEMYPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L N ++ + + +L F + PG ++R + L++ + IP
Sbjct: 267 QQLA----NGAYLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGSGIEVLQQALAKIPQ 322
Query: 243 SV 244
+
Sbjct: 323 EL 324
>gi|114564502|ref|YP_752016.1| tRNA-dihydrouridine synthase A [Shewanella frigidimarina NCIMB 400]
gi|114335795|gb|ABI73177.1| TIM-barrel protein, yjbN family protein [Shewanella frigidimarina
NCIMB 400]
Length = 349
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 130/217 (59%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + + + T++P++VK RIG+D+ DSY L D
Sbjct: 107 NVGCPSDRVQ-NGRFGACLMAEPALVAQCVDAMKQVTDIPITVKTRIGIDEQDSYQFLTD 165
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS+ + F IH+RKA L G+SP ENR IPPL Y+ Y L RD+ L ++NGGI
Sbjct: 166 FIETVSAQGCSA-FTIHARKAWLQGLSPKENREIPPLDYDRVYQLKRDYQHLNISINGGI 224
Query: 123 NTVDE--VNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T++E ++ AL G VMVGR AYQNP Y L VD + G ++ +TR+QV+E+ Y
Sbjct: 225 KTLEESKLHLALLDG---VMVGREAYQNP-YILAQVDQQLCGLDTAVITRQQVIEQMLPY 280
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+A L G + + + ++ F PG+ ++R
Sbjct: 281 IEAHLAQGG----RLNHITRHMIGLFQGLPGSRGWRR 313
>gi|374620237|ref|ZP_09692771.1| tRNA-U16,U17-dihydrouridine synthase [gamma proteobacterium HIMB55]
gi|374303464|gb|EHQ57648.1| tRNA-U16,U17-dihydrouridine synthase [gamma proteobacterium HIMB55]
Length = 329
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 131/229 (57%), Gaps = 24/229 (10%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G FG LM + + V + +S + ++PV+VK R+G+DD +SY+ + D
Sbjct: 79 NCGCPSDRVQ-NGAFGACLMREAELVRDCVSAMNEAVDIPVTVKHRLGIDDDNSYDIVRD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ ++ FI H+R A L G+SP ENR +PPLKYE+ Y L RDFPDLT +NGGI
Sbjct: 138 FVGTVAE-GGSQVFIAHARNAWLKGLSPKENREVPPLKYEWVYQLKRDFPDLTIVINGGI 196
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSG------------L 168
T++E A L AH VM+GR YQNPW+ L VD ++ +G L
Sbjct: 197 TTLEECQAHL---AHVDGVMLGREPYQNPWF-LSAVDELLFQETPTGDKSNTLKQSSSPL 252
Query: 169 TRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+RR E Y + +L G + V++ +L + +PG F+R
Sbjct: 253 SRRATAEALMPYLEKVLSEGGR----LNHVLRHVLGLYQRQPGGKQFRR 297
>gi|320155187|ref|YP_004187566.1| tRNA dihydrouridine synthase A [Vibrio vulnificus MO6-24/O]
gi|319930499|gb|ADV85363.1| tRNA dihydrouridine synthase A [Vibrio vulnificus MO6-24/O]
Length = 326
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 133/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVATMKEVVDIPVTVKTRIGIDDQDSYEFLTD 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 149 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLTIAINGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQ+P Y L VD ++G+ S RRQ+VE+ Y +
Sbjct: 209 KSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSQSPIKKRRQIVEEMYPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L N ++ + + +L F + PG ++R + L++ + IP
Sbjct: 267 QQLA----NGAYLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGSGIEVLQQALAKIPQ 322
Query: 243 SV 244
+
Sbjct: 323 EL 324
>gi|89075955|ref|ZP_01162327.1| putative NifR3/Smm1 family protein [Photobacterium sp. SKA34]
gi|89048304|gb|EAR53883.1| putative NifR3/Smm1 family protein [Photobacterium sp. SKA34]
Length = 348
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 126/215 (58%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 112 NVGCPSDRVQ-NGMFGACLMGEAELVAQCVTAMRDVVDIPVTVKTRIGIDDQDSYEFLKD 170
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI+ VS +F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGGI
Sbjct: 171 FIHVVSEKGGCDNFTIHARKAWLSGLSPKENREIPPLDYPRVYQLKQDFAHLTMAINGGI 230
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T +E+ A L K VMVGR AYQ+P Y + VD ++G+ + RR+VVE Y +
Sbjct: 231 KTFEEMEAHL-KHMDGVMVGREAYQSP-YLMAEVDQRLFGSERPVMKRREVVEAMYPYIE 288
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L N ++ + + +L F S PG ++R
Sbjct: 289 KQLA----NGSYLGHITRHMLGLFQSMPGARQWRR 319
>gi|187923745|ref|YP_001895387.1| tRNA-dihydrouridine synthase A [Burkholderia phytofirmans PsJN]
gi|187714939|gb|ACD16163.1| TIM-barrel protein, yjbN family [Burkholderia phytofirmans PsJN]
Length = 333
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 124/217 (57%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSVPVTVKHRIGVDAVEEYGFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPLKYEY Y L RDFP L +NGGI
Sbjct: 155 FVGTIAE-AGCNVFIVHARNAILKGLSPKENREIPPLKYEYAYQLKRDFPQLEIIINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY-- 180
T+DEV A L + VM+GR AY NP Y L VD YGA + LTR QV K Y
Sbjct: 214 KTLDEVEAHL-EHVDGVMLGREAYHNP-YVLADVDARFYGAAQTPLTREQVEAKLIEYCA 271
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + GTY + + + L + E G ++R
Sbjct: 272 AEMVRGTY------LGAITRHALGLYRGEAGARGWRR 302
>gi|402306879|ref|ZP_10825912.1| tRNA dihydrouridine synthase A [Haemophilus sputorum HK 2154]
gi|400373723|gb|EJP26650.1| tRNA dihydrouridine synthase A [Haemophilus sputorum HK 2154]
Length = 324
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 127/217 (58%), Gaps = 13/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + M + ++PV+VK RIG+DD DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGMFGACLMGKADLVADCMKAMRDAVDIPVTVKHRIGIDDLDSYEFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV S + FI+H+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI
Sbjct: 152 FIEKVQPYS--QDFIVHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLNISINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L + VMVGR AYQNP LG +D+ I+G +T ++ VEK Y +
Sbjct: 210 KTIEEIKTHL-QFVDGVMVGREAYQNP-SLLGAIDSQIFGENQPLVTAKEAVEKMFPYIE 267
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G Y N+ +++ +L F G ++R
Sbjct: 268 QQLLQGVYLNH------IVRHMLGAFQQCKGARQWRR 298
>gi|343505067|ref|ZP_08742715.1| tRNA-dihydrouridine synthase A [Vibrio ichthyoenteri ATCC 700023]
gi|342809053|gb|EGU44183.1| tRNA-dihydrouridine synthase A [Vibrio ichthyoenteri ATCC 700023]
Length = 326
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 129/242 (53%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DDHDSY L D
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKYVVDIPVTVKTRIGIDDHDSYEFLTD 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF L +NGG+
Sbjct: 149 FVSTVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFAHLVIAVNGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L K VMVGR AYQNP Y L VD I+G R QVVE+ Y +
Sbjct: 209 KTLQETQEHL-KHLDGVMVGREAYQNP-YILAEVDQLIFGLDKPIKKRTQVVEEMYPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L +N ++ + + +L F + PG ++R + +E + IP
Sbjct: 267 QQL----SNGAYLGHITRHMLGLFQNMPGARQWRRHISENAHKPGSGIEVVEAALAKIPK 322
Query: 243 SV 244
+
Sbjct: 323 EL 324
>gi|359298827|ref|ZP_09184666.1| tRNA-dihydrouridine synthase A [Haemophilus [parainfluenzae] CCUG
13788]
Length = 324
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 126/217 (58%), Gaps = 13/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + M + ++PV+VK RIG+DD DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGMFGACLMGKADLVADCMKAMRDAVDIPVTVKHRIGIDDLDSYEFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV S + FI+H+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI
Sbjct: 152 FIEKVQPYS--QDFIVHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLNISINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE+ L + VMVGR AYQNP LG +D+ I+G +T + VEK Y +
Sbjct: 210 KTIDEIKTHL-QFVDGVMVGREAYQNP-SLLGAIDSQIFGENRPLVTAKAAVEKMFPYIE 267
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G Y N+ +++ +L F G ++R
Sbjct: 268 QQLSQGVYLNH------IVRHMLGAFQQCKGARQWRR 298
>gi|333907912|ref|YP_004481498.1| yjbN family TIM-barrel protein [Marinomonas posidonica IVIA-Po-181]
gi|333477918|gb|AEF54579.1| TIM-barrel protein, yjbN family [Marinomonas posidonica
IVIA-Po-181]
Length = 345
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 127/226 (56%), Gaps = 15/226 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P V +AM + + N+PV++K RIG+D+ Y+ + D
Sbjct: 109 NVGCPSDRVQ-NSLIGACLMAHPDKVKDAMKAMQDSCNIPVTLKHRIGLDEQQDYSVVRD 167
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +VS+ + + FI+H+R A+L G+SP ENR IPPLKY Y + L DFPDL +NGGI
Sbjct: 168 FVGEVST-TGVKTFIVHARNAILQGLSPKENREIPPLKYHYVHQLKEDFPDLEIIINGGI 226
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E A L K VM+GR AY NPW L VD AIYG R Q +E + Y +
Sbjct: 227 KTIEECQAHLLK-VDGVMIGREAYHNPWL-LSQVDQAIYGNAPVVTDRYQALEAFVPYVE 284
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADA 221
L G H + + +L F EPG F+R KADA
Sbjct: 285 EKLAQ-GERLLH---LTRHILGIFQGEPGGKQFRRYLSENGHKADA 326
>gi|307256171|ref|ZP_07537958.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306865352|gb|EFM97248.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 334
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 132/241 (54%), Gaps = 16/241 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + +PV+VK RIG+DD DSY LCD
Sbjct: 102 NVGCPSDRVQ-NGMFGACLMAKADLVADCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCD 160
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV S FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 161 FIEKVQPYS--NDFIVHARKAWLSGLSPKQNREIPPLDYERVYQLKRDFPHLNISINGGI 218
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L VMVGR AYQNP LG +D+ I+G +T R+ VEK Y
Sbjct: 219 KTIEEIKQHL-AFVDGVMVGREAYQNP-SLLGEIDSQIFGENQPLVTAREAVEKMLPY-- 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
+ ++ +++ +L F + G ++R K A + + SF++E
Sbjct: 275 --IAVQTQKGVYLNHIVRHMLGAFQNCKGARQWRRHLSENATKQGAGVEVVEQALSFVQE 332
Query: 236 T 236
+
Sbjct: 333 S 333
>gi|456864580|gb|EMF82979.1| tRNA dihydrouridine synthase A [Leptospira weilii serovar Topaz
str. LT2116]
Length = 339
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 134/244 (54%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + +N ++PV+VKCRIG+ ++ LC
Sbjct: 98 NVGCPSDRVR-EGNFGACLMETPEKVAELVYSMDSNVSIPVTVKCRIGIPGKETLEDLCR 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + R FI+H+R A+L G+SPA+NR IPPL+Y Y +L FPDL +NGGI
Sbjct: 157 FIECVRQ-AGVRRFIVHARIAVLGGLSPAQNRQIPPLRYAYVESLKEQFPDLLIEINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E+ L K VM+GRAAY+ P Y VD+ + S L+RR+V+ + + Y +
Sbjct: 216 RTLAEMRDRL-KANDGVMIGRAAYETP-YLFSEVDSLFFHDNSPSLSRREVLLRMRDYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH E G F+R C L + + I +
Sbjct: 274 EVVLKERNGKPH--HALRHMLGLFHGEKGARSFRRILTERMY-CDYSSDLLLDAVKEISN 330
Query: 243 SVLD 246
LD
Sbjct: 331 DTLD 334
>gi|190149417|ref|YP_001967942.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307262734|ref|ZP_07544361.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189914548|gb|ACE60800.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306871879|gb|EFN03596.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 329
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 133/243 (54%), Gaps = 20/243 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + +PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMAKADLVADCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV S FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 156 FIEKVQPYS--NDFIVHARKAWLSGLSPKQNREIPPLDYECVYQLKRDFPHLNISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKY--QIY 180
T++E+ L VMVGR AYQNP LG +D+ I+G +T R+ VEK I
Sbjct: 214 KTIEEIKRHL-AFVDGVMVGREAYQNP-SLLGEIDSQIFGENQPLVTAREAVEKMLPYIA 271
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
G Y N+ +++ +L F + G ++R K A + + SF+
Sbjct: 272 AQTQKGVYLNH------IVRHMLGAFQNCKGARQWRRHLSENATKQGAGVEVVEQALSFV 325
Query: 234 EET 236
+E+
Sbjct: 326 QES 328
>gi|410666192|ref|YP_006918563.1| tRNA-dihydrouridine synthase A [Simiduia agarivorans SA1 = DSM
21679]
gi|409028549|gb|AFV00834.1| tRNA-dihydrouridine synthase A [Simiduia agarivorans SA1 = DSM
21679]
Length = 325
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 123/217 (56%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G G LM P+ V + + + +PV+VK RIG+DD D L D
Sbjct: 92 NCGCPSDRVQ-NGMIGACLMAQPQLVADCIKAMQDAVQIPVTVKHRIGIDDMDDDQGLLD 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +++ FI+H+RKA L G+SP ENR IPPL Y+ + L ++FPDL +NGG+
Sbjct: 151 FVAPIAATGCVT-FIVHARKAWLKGLSPKENREIPPLNYDRVHKLKQEFPDLEIIINGGL 209
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+ + A L AH VMVGR AY NPW L VD AIYG P + R V+++ Y
Sbjct: 210 KTLADCQAQL---AHVDGVMVGREAYHNPWL-LSEVDAAIYGQPPVTIDRLAVIDQMMGY 265
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
D L + G H + + LL FH +PG F+R
Sbjct: 266 IDKQL-SAGMRLHH---ITRHLLGLFHGQPGGKQFRR 298
>gi|307244957|ref|ZP_07527054.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307253910|ref|ZP_07535762.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258364|ref|ZP_07540105.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306854122|gb|EFM86330.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306863114|gb|EFM95056.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867548|gb|EFM99395.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 325
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 132/241 (54%), Gaps = 20/241 (8%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + + + +PV+VK RIG+DD DSY LCDFI
Sbjct: 95 GCPSDRVQ-NGMFGACLMAKADLVADCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFI 153
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV S FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI T
Sbjct: 154 EKVQPYS--NDFIVHARKAWLSGLSPKQNREIPPLDYECVYQLKRDFPHLNISINGGIKT 211
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKY--QIYGD 182
++E+ L VMVGR AYQNP LG +D+ I+G +T R+ VEK I
Sbjct: 212 IEEIKRHL-AFVDGVMVGREAYQNP-SLLGEIDSQIFGENQPLVTAREAVEKMLPYIAAQ 269
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
G Y N+ +++ +L F + G ++R K A + + SF++E
Sbjct: 270 TQKGVYLNH------IVRHMLGAFQNCKGARQWRRHLSENATKQGAGVEVVEQALSFVQE 323
Query: 236 T 236
+
Sbjct: 324 S 324
>gi|343499074|ref|ZP_08737071.1| tRNA dihydrouridine synthase A [Vibrio tubiashii ATCC 19109]
gi|418479481|ref|ZP_13048562.1| tRNA dihydrouridine synthase A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342823463|gb|EGU58091.1| tRNA dihydrouridine synthase A [Vibrio tubiashii ATCC 19109]
gi|384572880|gb|EIF03385.1| tRNA dihydrouridine synthase A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 333
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 123/215 (57%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E +S + +VPV+VK RIG+DD DSY L D
Sbjct: 97 NVGCPSDRVQ-NGRFGACLMAEPELVAECVSAMRDVVDVPVTVKTRIGIDDQDSYEFLTD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 156 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLTIAINGGV 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VMVGR AYQNP Y L +VD I+G R QVVE+ Y +
Sbjct: 216 KTLEESKEHLQH-LDGVMVGREAYQNP-YILANVDQEIFGLDKPVKKRSQVVEEMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + ++ + + +L F + PG ++R
Sbjct: 274 QQL----SQGAYLGHITRHMLGLFQNMPGARQWRR 304
>gi|303249850|ref|ZP_07336054.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303251970|ref|ZP_07338141.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302649400|gb|EFL79585.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302651417|gb|EFL81569.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 325
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 132/241 (54%), Gaps = 16/241 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + +PV+VK RIG+DD DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGMFGACLMAKADLVADCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV S FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 152 FIEKVQPYS--NDFIVHARKAWLSGLSPKQNREIPPLDYERVYQLKRDFPHLNISINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L VMVGR AYQNP LG +D+ I+G +T R+ VEK Y
Sbjct: 210 KTIEEIKRHL-AFVDGVMVGREAYQNP-SLLGEIDSQIFGENRPLVTAREAVEKMLPY-- 265
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
+ ++ +++ +L F + G ++R K A + + SF++E
Sbjct: 266 --IAVQTQKGVYLNHIVRHMLGAFQNCKGARQWRRHLSENATKQGAGVEVVEQALSFVQE 323
Query: 236 T 236
+
Sbjct: 324 S 324
>gi|126207634|ref|YP_001052859.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165975602|ref|YP_001651195.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|307260603|ref|ZP_07542295.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|126096426|gb|ABN73254.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165875703|gb|ABY68751.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|306869680|gb|EFN01465.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 325
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 132/241 (54%), Gaps = 16/241 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + +PV+VK RIG+DD DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGMFGACLMAKADLVADCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV S FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 152 FIEKVQPYS--NDFIVHARKAWLSGLSPKQNREIPPLDYERVYQLKRDFPHLNISINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L VMVGR AYQNP LG +D+ I+G +T R+ VEK Y
Sbjct: 210 KTIEEIKRHL-AFVDGVMVGREAYQNP-SLLGEIDSQIFGENRPLVTAREAVEKMLPY-- 265
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
+ ++ +++ +L F + G ++R K A + + SF++E
Sbjct: 266 --IAVQTQKGVYLNHIVRHMLGAFQNCKGARQWRRHLSENATKQGAGVEVVEQALSFVQE 323
Query: 236 T 236
+
Sbjct: 324 S 324
>gi|343495972|ref|ZP_08734079.1| tRNA-dihydrouridine synthase A [Vibrio nigripulchritudo ATCC 27043]
gi|342821813|gb|EGU56579.1| tRNA-dihydrouridine synthase A [Vibrio nigripulchritudo ATCC 27043]
Length = 323
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 124/217 (57%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + +VPV+VK RIG+DD DSY L D
Sbjct: 87 NVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMREVVDVPVTVKTRIGIDDQDSYEFLTD 145
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y + +DFP+LT +NGGI
Sbjct: 146 FVSVVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKKDFPNLTIAINGGI 205
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E A L+ VM+GR AYQ+P Y L VD ++G+ S R +V Y +
Sbjct: 206 KTLEEAKAHLQH-LDGVMIGREAYQSP-YILASVDQELFGSDKSIKKRSDIVRAMYPYIE 263
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F S PG ++R
Sbjct: 264 KELSKGTY------LGHMTRHMLGLFQSMPGARQWRR 294
>gi|451977713|ref|ZP_21927782.1| tRNA dihydrouridine synthase A [Vibrio alginolyticus E0666]
gi|451929428|gb|EMD77176.1| tRNA dihydrouridine synthase A [Vibrio alginolyticus E0666]
Length = 315
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 134/242 (55%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DDHDSY L D
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPQLVSDCVAAMKDVVDIPVTVKTRIGIDDHDSYEFLTD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 138 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKQDFSHLTIAINGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +
Sbjct: 198 KSLEEAKAHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSNAPVKKRSEIVEEMYPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A L ++ + + +L F S PG ++R + L++ + IP
Sbjct: 256 AQLA----KGAYLGHITRHMLGLFQSMPGARQWRRHISENAHKPGSGLEVLQDALAKIPK 311
Query: 243 SV 244
+
Sbjct: 312 EL 313
>gi|307247131|ref|ZP_07529183.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307251674|ref|ZP_07533579.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306856380|gb|EFM88531.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306860871|gb|EFM92879.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 329
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 132/241 (54%), Gaps = 16/241 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + +PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMAKADLVADCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV S FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 156 FIEKVQPYS--NDFIVHARKAWLSGLSPKQNREIPPLDYERVYQLKRDFPHLNISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L VMVGR AYQNP LG +D+ I+G +T R+ VEK Y
Sbjct: 214 KTIEEIKRHL-AFVDGVMVGREAYQNP-SLLGEIDSQIFGENRPLVTAREAVEKMLPY-- 269
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
+ ++ +++ +L F + G ++R K A + + SF++E
Sbjct: 270 --IAVQTQKGVYLNHIVRHMLGAFQNCKGARQWRRHLSENATKQGAGVEVVEQALSFVQE 327
Query: 236 T 236
+
Sbjct: 328 S 328
>gi|428213630|ref|YP_007086774.1| tRNA-U16,U17-dihydrouridine synthase [Oscillatoria acuminata PCC
6304]
gi|428002011|gb|AFY82854.1| tRNA-U16,U17-dihydrouridine synthase [Oscillatoria acuminata PCC
6304]
Length = 341
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 126/215 (58%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P+ V + + T +PV+VK RIG+D D Y + +
Sbjct: 110 NVGCPSSRVQ-NGNFGACLMAQPERVARGIEAMQRVTKLPVTVKHRIGIDARDRYEDMRE 168
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ S S R F +H+RKA L+G++P ENRTIPPL+YE Y L ++FP+L +NGGI
Sbjct: 169 FV-RIISESGCRRFTVHARKAWLSGLNPKENRTIPPLRYEDVYQLKQEFPELWIEINGGI 227
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++V L++ VM+GRAAY NP Y D I+G L+R QVVE+ Y D
Sbjct: 228 TTMEQVREHLQQ-VDAVMIGRAAYDNP-YLFASCDRDIFGEEIPPLSRHQVVEQMLPYID 285
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L N + + + +L F +PG+ +KR
Sbjct: 286 HWLAQGSN----LNQISRHILQLFTGQPGSRAWKR 316
>gi|77166407|ref|YP_344932.1| tRNA-dihydrouridine synthase A [Nitrosococcus oceani ATCC 19707]
gi|254435191|ref|ZP_05048698.1| TIM-barrel protein, yjbN family [Nitrosococcus oceani AFC27]
gi|76884721|gb|ABA59402.1| tRNA-U16,U17-dihydrouridine synthase [Nitrosococcus oceani ATCC
19707]
gi|207088302|gb|EDZ65574.1| TIM-barrel protein, yjbN family [Nitrosococcus oceani AFC27]
Length = 337
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 126/215 (58%), Gaps = 12/215 (5%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LM +P+ V E ++ +A T +PV+VK RIG+D+ DSY L FI
Sbjct: 108 GCPSNRVQS-GRFGACLMAEPELVAECVAAMAQATQIPVTVKTRIGIDEQDSYEALDHFI 166
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ + R FIIH+RKA L G+SP ENR PPL+Y+ + +DFP LT +NGGI T
Sbjct: 167 STVAQ-AGCRTFIIHARKAWLQGLSPKENREKPPLRYDVVRTIKQDFPQLTVIINGGITT 225
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY--GD 182
++E++ L + VM+GRAAY NP Y L VD YG LTR +++E + Y
Sbjct: 226 LEEISEHL-ELLDGVMIGRAAYHNP-YLLAQVDRNFYGDFHPFLTRHEIIEAFLPYVAEQ 283
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ G Y N+ + + +L F +PG ++R
Sbjct: 284 LVQGVYLNH------MTRHILGLFQGQPGARAWRR 312
>gi|32034537|ref|ZP_00134701.1| COG0042: tRNA-dihydrouridine synthase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 329
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 132/241 (54%), Gaps = 16/241 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + +PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMAKADLVADCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV S FI+H+RKA L+G+SP +NR IPPL YE Y L RDFP L ++NGGI
Sbjct: 156 FIEKVQPYS--NDFIVHARKAWLSGLSPKQNREIPPLDYERVYQLKRDFPHLNISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L VMVGR AYQNP LG +D+ I+G +T R+ VEK Y
Sbjct: 214 KTIEEIKRHL-AFVDGVMVGREAYQNP-SLLGEIDSQIFGENRPLVTAREAVEKMLPY-- 269
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
+ ++ +++ +L F + G ++R K A + + SF++E
Sbjct: 270 --IAVQTQKGVYLNHIVRHMLGAFQNCKGARQWRRHLSENATKQGAGVEVVEQALSFVQE 327
Query: 236 T 236
+
Sbjct: 328 S 328
>gi|209527420|ref|ZP_03275926.1| TIM-barrel protein, yjbN family [Arthrospira maxima CS-328]
gi|209492155|gb|EDZ92504.1| TIM-barrel protein, yjbN family [Arthrospira maxima CS-328]
Length = 338
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V +A+S + N+PV+VK RIG+D+ D Y +
Sbjct: 108 NVGCPSARVQ-NGNFGACLMAEPERVAQAISAMKKAVNIPVTVKHRIGIDNRDRYEDMAA 166
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V + S + F +H+RKA L G+SP +NR IPPL+Y + L +FPDLT +NGG
Sbjct: 167 FV-RVVAASGCQRFTVHARKAWLQGLSPKDNRNIPPLRYGDVHRLKAEFPDLTIEINGGF 225
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++V L K VM+GRAAY NP Y D IYG + TR QVVE+ Y +
Sbjct: 226 TTLEQVKQQLTK-VDAVMIGRAAYDNP-YLFAIADREIYGENINPPTRHQVVEQMLPYIE 283
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + V++ +L F +PG +KR
Sbjct: 284 NWLSQGG----RLNSVVRHILQLFAGQPGTKAWKR 314
>gi|423067892|ref|ZP_17056682.1| TIM-barrel protein yjbN family [Arthrospira platensis C1]
gi|406710635|gb|EKD05842.1| TIM-barrel protein yjbN family [Arthrospira platensis C1]
Length = 338
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V +A+S + N+PV+VK RIG+D+ D Y +
Sbjct: 108 NVGCPSARVQ-NGNFGACLMAEPERVAQAISAMKKAVNIPVTVKHRIGIDNRDRYEDMAA 166
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V + S + F +H+RKA L G+SP +NR IPPL+Y + L +FPDLT +NGG
Sbjct: 167 FV-RVVAASGCQRFTVHARKAWLQGLSPKDNRNIPPLRYGDVHRLKAEFPDLTIEINGGF 225
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++V L K VM+GRAAY NP Y D IYG + TR QVVE+ Y +
Sbjct: 226 TTLEQVKQQLTK-VDAVMIGRAAYDNP-YLFAIADREIYGENINPPTRHQVVEQMLPYIE 283
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + V++ +L F +PG +KR
Sbjct: 284 NWLSQGG----RLNSVVRHILQLFAGQPGTKAWKR 314
>gi|421350237|ref|ZP_15800604.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-25]
gi|395954959|gb|EJH65565.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-25]
Length = 316
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQ 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 138 FIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 198 KSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 256 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 310
>gi|307154453|ref|YP_003889837.1| yjbN family TIM-barrel protein [Cyanothece sp. PCC 7822]
gi|306984681|gb|ADN16562.1| TIM-barrel protein, yjbN family [Cyanothece sp. PCC 7822]
Length = 329
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 129/239 (53%), Gaps = 8/239 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P+ V ++ + N+PV+VK RIG+DD D Y L +
Sbjct: 96 NVGCPSDRVQ-NGNFGACLMAQPEKVAHCVAAMQKAVNIPVTVKHRIGIDDRDRYEDLAN 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS R F +H+RKA L G+SP ENRTIPPL+YE Y L ++FP L +NGGI
Sbjct: 155 FVRIVSEAGCCR-FSVHARKAWLKGLSPKENRTIPPLRYEDVYRLKQEFPHLFIEINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++V+ L + VM+GRAAY NP Y VD IYG + TR QV EK Y +
Sbjct: 214 TTLEQVHQQL-QWVDGVMIGRAAYDNP-YLFATVDRDIYGEETIPPTRHQVAEKMLPYIE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
I+ + + + + LL F +PG +KR +E + +P
Sbjct: 272 DIV----SQGIKLHAISRHLLQLFSGQPGTKAWKRYISENVHHQAAGAEVIEAALAQVP 326
>gi|424811155|ref|ZP_18236471.1| tRNA-dihydrouridine synthase A [Vibrio mimicus SX-4]
gi|342321786|gb|EGU17587.1| tRNA-dihydrouridine synthase A [Vibrio mimicus SX-4]
Length = 316
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + + ++PV+VK RIG+DD DSY L
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMRSVVDIPVTVKTRIGIDDQDSYEFLTQ 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 138 FISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 198 KTLEEAQQHLQY-LDGVMIGREAYQNP-YLLAEVDQQIFGLDTPVKKRSQVIHEMMPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 256 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 310
>gi|320335164|ref|YP_004171875.1| hypothetical protein [Deinococcus maricopensis DSM 21211]
gi|319756453|gb|ADV68210.1| TIM-barrel protein, yjbN family [Deinococcus maricopensis DSM
21211]
Length = 340
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 135/246 (54%), Gaps = 10/246 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P V + + T +PV+VK RIG+DD DSY L
Sbjct: 96 NVGCPSDRVQ-NGRFGACLMATPDVVARGVEAMRGATGLPVTVKHRIGIDDLDSYELLTA 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+RKA L+G+SP ENR IPPL+YE L DFP LTF LNGG+
Sbjct: 155 FVRTVAD-AGCETFIVHARKAWLSGLSPKENREIPPLRYEVVRQLKMDFPQLTFVLNGGV 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE LR VM+GR AY NP Y L D ++G TRR+VVE Y +
Sbjct: 214 KSLDEAETHLRS-VDGVMIGREAYGNP-YLLALADARLFGDAHVVPTRREVVEGLIGYAE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSFLEETIVAIP 241
+L ++ V K L F + G +KR ++ A+ V+ L + + +P
Sbjct: 272 EMLA----RDVYLSRVTKHALGLFAGQAGARGWKRTISERAYLPGAGVE-VLRDAMACVP 326
Query: 242 DSVLDS 247
D+VLD+
Sbjct: 327 DAVLDT 332
>gi|157373905|ref|YP_001472505.1| tRNA-dihydrouridine synthase A [Shewanella sediminis HAW-EB3]
gi|157316279|gb|ABV35377.1| TIM-barrel protein, YjbN family [Shewanella sediminis HAW-EB3]
Length = 327
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 129/215 (60%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +PK V E ++ + ++PV+VK RIG+D+ DSY L +
Sbjct: 96 NVGCPSDRVQ-NGRFGACLMAEPKLVAECVTAMREVVDIPVTVKTRIGIDEQDSYPFLTE 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V + FI+H+RKA L G+SP ENR IPPL Y+ Y L +D+P+L+ ++NGG+
Sbjct: 155 FVETVRD-AGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYQLKQDYPELSISINGGV 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE L K VMVGR AYQNP Y L VD + G+ L+R V+EK+ Y +
Sbjct: 214 KSLDECRTHLTK-LDGVMVGREAYQNP-YMLAEVDQQLCGSDRPVLSRDAVLEKFIPYIE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + G + + + + F EPG+ +++R
Sbjct: 272 KHLQSGG----RLNHISRHMTGLFQGEPGSRVWRR 302
>gi|258622397|ref|ZP_05717420.1| NifR3/Smm1 family protein [Vibrio mimicus VM573]
gi|258585311|gb|EEW10037.1| NifR3/Smm1 family protein [Vibrio mimicus VM573]
Length = 339
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + + ++PV+VK RIG+DD DSY L
Sbjct: 102 NVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMRSVVDIPVTVKTRIGIDDQDSYEFLTQ 160
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 161 FISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 220
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 221 KTLEEAQQHLQY-LDGVMIGREAYQNP-YLLAEVDQQIFGLDTPVKKRSQVIHEMMPYIE 278
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 279 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 333
>gi|419838647|ref|ZP_14362070.1| tRNA dihydrouridine synthase A [Haemophilus haemolyticus HK386]
gi|386910237|gb|EIJ74896.1| tRNA dihydrouridine synthase A [Haemophilus haemolyticus HK386]
Length = 329
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 133/239 (55%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 155 FIEKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQLKRDFPQLTIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LG +D A++ ++ +T + V+ Y +
Sbjct: 214 KTIEEIKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFAPNAAIVTAHEAVQSMLPYIE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 272 QQL----SQGIHLNHIVRHMLGAFQNCKGARQWRRYLSENAFKQGAGIEVVETALSFVE 326
>gi|240950331|ref|ZP_04754601.1| tRNA-dihydrouridine synthase A [Actinobacillus minor NM305]
gi|240295142|gb|EER45961.1| tRNA-dihydrouridine synthase A [Actinobacillus minor NM305]
Length = 329
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 136/243 (55%), Gaps = 20/243 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGMFGACLMGKADLVADCIKAMQDAVEIPVTVKHRIGIDELDSYAFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI K+ S FI+H+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI
Sbjct: 152 FIEKIQPYS--NDFIVHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLNISINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L + VMVGR AYQNP LG +D+ I+ +T R+ VEK Y +
Sbjct: 210 KTIEEIKHHL-QFVDGVMVGREAYQNP-SLLGEIDSQIFNENKPLVTAREAVEKMLPYIE 267
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ +++ +L F + G ++R KA A + + SF+
Sbjct: 268 KELAKGVYLNH------IVRHMLGAFQNCKGARQWRRHLSENACKAGAGVEVVEQALSFV 321
Query: 234 EET 236
+E+
Sbjct: 322 QES 324
>gi|417854208|ref|ZP_12499530.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338218392|gb|EGP04165.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 327
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 135/238 (56%), Gaps = 19/238 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + +S + ++PV+VK RIG+DD DSY LC+F+
Sbjct: 98 GCPSDRVQ-NGMFGACLMAKADLVADCVSAMQTEVSIPVTVKTRIGIDDLDSYEFLCEFV 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP L ++NGGI T
Sbjct: 157 QKVHE-AGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQLKRDFPHLHMSINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG++D A++ +T R+ VEK Y +
Sbjct: 216 LEEMQQHLQY-MDGVMVGREAYQNP-SLLGYIDQALFDPTCPVVTPREAVEKMFPYIEQQ 273
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ V++ +L F S G ++R KA A + + SF+
Sbjct: 274 LSQGVYLNH------VVRHMLGAFQSCKGARQWRRYLSENAHKAGAGLEVVEKALSFV 325
>gi|359727114|ref|ZP_09265810.1| tRNA-dihydrouridine synthase A [Leptospira weilii str. 2006001855]
gi|417781119|ref|ZP_12428874.1| tRNA dihydrouridine synthase A [Leptospira weilii str. 2006001853]
gi|410778760|gb|EKR63383.1| tRNA dihydrouridine synthase A [Leptospira weilii str. 2006001853]
Length = 339
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 134/244 (54%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + ++ ++PV+VKCRIG+ ++ LC
Sbjct: 98 NVGCPSDRVR-EGNFGACLMETPEKVAELVCAMDSSVSIPVTVKCRIGIPGKETLEDLCR 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + R FI+H+R A+L G+SPA+NR IPPL+Y Y +L FPDL +NGGI
Sbjct: 157 FIECVRQ-AGVRRFIVHARIAVLGGLSPAQNRQIPPLRYAYVESLKEQFPDLLIEINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E+ L K VM+GRAAY+ P Y VD+ + S L+RR+V+ + + Y +
Sbjct: 216 RTLAEMQDRL-KTNDGVMIGRAAYETP-YLFSEVDSLFFHDNSPSLSRREVLLRMRDYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH E G F+R C L + + I +
Sbjct: 274 EVVLKEKNGKPH--HALRHMLGLFHGEKGARSFRRILTERMY-CDYSSDLLLDAVREISN 330
Query: 243 SVLD 246
LD
Sbjct: 331 DTLD 334
>gi|343511553|ref|ZP_08748712.1| tRNA-dihydrouridine synthase A [Vibrio scophthalmi LMG 19158]
gi|342797755|gb|EGU33394.1| tRNA-dihydrouridine synthase A [Vibrio scophthalmi LMG 19158]
Length = 326
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 129/242 (53%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DDHDSY L D
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDVVDIPVTVKTRIGIDDHDSYEFLTD 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF L +NGG+
Sbjct: 149 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFAHLVIAVNGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L K VMVGR AYQNP Y L VD I+G R QVVE+ Y +
Sbjct: 209 KTLQEAQEHL-KHLDGVMVGREAYQNP-YILAEVDQLIFGLDKPVKKRTQVVEEMYPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L +N ++ + + +L F + PG ++R + +E + IP
Sbjct: 267 QQL----SNGAYLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGSGIEVVEAALAKIPK 322
Query: 243 SV 244
+
Sbjct: 323 EL 324
>gi|262401531|ref|ZP_06078098.1| tRNA-dihydrouridine synthase [Vibrio sp. RC586]
gi|262352246|gb|EEZ01375.1| tRNA-dihydrouridine synthase [Vibrio sp. RC586]
Length = 316
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + + ++PV+VK RIG+DD DSY L
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMRSVVDIPVTVKTRIGIDDQDSYEFLTQ 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 138 FIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYSRAYQIKRDFPHLTIAVNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQ+P Y L VD I+G + R QV+ + Y +
Sbjct: 198 KTLEEAKLHLQH-LDGVMIGREAYQSP-YLLAEVDQQIFGLDTPVKKRSQVIHEMMPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 256 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKLGAGLEVVEQALAKIP 310
>gi|319775424|ref|YP_004137912.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae F3047]
gi|329122550|ref|ZP_08251132.1| tRNA-dihydrouridine synthase A [Haemophilus aegyptius ATCC 11116]
gi|317450015|emb|CBY86228.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae F3047]
gi|327473133|gb|EGF18558.1| tRNA-dihydrouridine synthase A [Haemophilus aegyptius ATCC 11116]
Length = 287
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 133/239 (55%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 54 NVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCD 112
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 113 FIEKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQLKRDFPHLTIAINGGI 171
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LG +D A++ ++ +T + V+ Y +
Sbjct: 172 KTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFYPNAAIVTAHEAVQSMLPYIE 229
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L N H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 230 QQL----NQGIHLNHIVRHMLGAFQNCKGARQWRRYLSENAFKQGAGVEVVETALSFVE 284
>gi|218246535|ref|YP_002371906.1| tRNA-dihydrouridine synthase A [Cyanothece sp. PCC 8801]
gi|218167013|gb|ACK65750.1| TIM-barrel protein, yjbN family [Cyanothece sp. PCC 8801]
Length = 331
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 128/239 (53%), Gaps = 8/239 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LML P+ V + + N+P+++K RIGVD+ D Y L +
Sbjct: 93 NVGCPSDRVQS-GNFGACLMLQPELVARCVEAMQKKVNIPITIKHRIGVDERDRYEDLAN 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K+ S + + F +H+RKA L G+SP ENRTIPPLKYE Y L ++F L +NGGI
Sbjct: 152 FV-KIVSDAGCQRFTVHARKAWLKGLSPKENRTIPPLKYEEVYQLKQEFSQLFIEINGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D++ L + VM+GRAAY NP Y VD IYG TR QVVEK Y D
Sbjct: 211 ITLDQIEHHL-QFVDGVMIGRAAYDNP-YLFATVDRDIYGQNIIPPTRHQVVEKMLPYID 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
+ NN + + + +L F PG +KR +EE + +P
Sbjct: 269 ----YWVNNGLKLHAISRHILAIFGGVPGTKAWKRHISENAHLPGAGVKVIEEALGKVP 323
>gi|220935021|ref|YP_002513920.1| tRNA-dihydrouridine synthase A [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219996331|gb|ACL72933.1| tRNA-dihydrouridine synthase A [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 336
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 125/213 (58%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LM +P+ V + + + + +PV+VK RIG+DD DSY +L FI
Sbjct: 107 GCPSDRVQS-GRFGACLMAEPQLVADCVEAMRSACGLPVTVKTRIGIDDRDSYPELTAFI 165
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V S R FIIH+RKA L G+SP ENR +PPL++++ Y L +DFP L LNGG+
Sbjct: 166 DTVQR-SGCRTFIIHARKAWLQGLSPRENREVPPLRHDWVYRLKQDFPALEIILNGGVKD 224
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+D V+ ALR+ VM+GR AY NP Y L VD YG +R QVVE++ Y +A
Sbjct: 225 LDTVSDALRQ-VDGVMLGREAYHNP-YVLAQVDARFYGDAHPVPSRHQVVERFLPYVEAR 282
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L P ++ + + +L F PG ++R
Sbjct: 283 L---AQGVP-LQAMTRHILGLFQGVPGARAWRR 311
>gi|183221906|ref|YP_001839902.1| tRNA-dihydrouridine synthase A [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189911975|ref|YP_001963530.1| tRNA-dihydrouridine synthase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167776651|gb|ABZ94952.1| tRNA-dihydrouridine synthase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167780328|gb|ABZ98626.1| tRNA-dihydrouridine synthase A [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 323
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 128/232 (55%), Gaps = 8/232 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P V E ++ + +PV+VK RIGV+ +SY L
Sbjct: 95 NVGCPSDRVQS-GSFGACLMKEPDLVAEMVAFCKSKVKIPVTVKHRIGVNGKESYEDLHQ 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K+ + H I+H+R A+L G+SP ENRTIPPL+YE Y L DFP+L T+NGGI
Sbjct: 154 FVSKIQK-AGVDHCIVHARIAILEGLSPKENRTIPPLRYEDVYRLKSDFPNLPITINGGI 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T E+ L K A VMVGRAAY NP + VD+ +G+ +TR +++K Y
Sbjct: 213 KTHAEIKTHLTK-ADGVMVGRAAYDNP-FLFADVDSLYFGSKEGTITRESILQKMIPYVQ 270
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE 234
++ + G V +++ +L +H E G F+R +S LE
Sbjct: 271 SVRMSGGK----VSHILRHILGLYHGEKGAREFRRYFTNGMHLTSATESILE 318
>gi|229512584|ref|ZP_04402054.1| tRNA dihydrouridine synthase A [Vibrio cholerae TMA 21]
gi|229350366|gb|EEO15316.1| tRNA dihydrouridine synthase A [Vibrio cholerae TMA 21]
Length = 315
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 78 NVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQ 136
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 137 FIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 197 KSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIE 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 255 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 309
>gi|441506422|ref|ZP_20988393.1| tRNA dihydrouridine synthase A [Photobacterium sp. AK15]
gi|441425888|gb|ELR63379.1| tRNA dihydrouridine synthase A [Photobacterium sp. AK15]
Length = 346
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 131/241 (54%), Gaps = 11/241 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + ++ + ++PVSVK RIG+D+ DSY L D
Sbjct: 110 NVGCPSDRVQ-NGRFGACLMGEAELVAQCVAAMREVVDIPVSVKTRIGIDEQDSYQFLTD 168
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS F IH+RKA L G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 169 FIGTVSEKGGCSDFTIHARKAWLQGLSPKENREIPPLDYPRVYQLKKDFAHLTMAINGGV 228
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++EV A L VMVGR AYQNP Y + +D ++G+ RR+VVE Y +
Sbjct: 229 KTMEEVEAHLEH-LDGVMVGREAYQNP-YMMADLDQRLFGSNKPVKKRREVVEAMFPYIE 286
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
L GTY N+ + + +L F + PG ++R + LE+ + I
Sbjct: 287 RELAKGTYLNH------ISRHMLGLFQNMPGARQWRRHISENAHKPGSGIEVLEQAMAKI 340
Query: 241 P 241
P
Sbjct: 341 P 341
>gi|406915515|gb|EKD54589.1| hypothetical protein ACD_60C00066G0003 [uncultured bacterium]
Length = 319
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 124/213 (58%), Gaps = 10/213 (4%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LML+P V E +S + A +PV+VKCRIGVD DSY +L F+
Sbjct: 94 GCPSHRVKA-GRFGACLMLEPDRVAECVSAMCAAVKIPVTVKCRIGVDHEDSYEKLAGFV 152
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KVS + R FIIH+RKA L GISP +NR IPPL+YE + RDF L+ +NGGI T
Sbjct: 153 QKVSE-AGCRVFIIHARKAWLTGISPKQNREIPPLQYEVVRQIKRDFQALSIVINGGIKT 211
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
V +V L VM+GR AY NP++ L + + PS ++R+ V+EK+ Y
Sbjct: 212 VKDVEEHL-PYVEGVMIGREAYSNPYF-LAALQEKFFLTPS--VSRKAVIEKFIPYIQDQ 267
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L N+ + V + +L + + G +++R
Sbjct: 268 L----KNKVKLSSVTRHILGLYQGQKGARIWRR 296
>gi|149190495|ref|ZP_01868765.1| NifR3/Smm1 family protein [Vibrio shilonii AK1]
gi|148835619|gb|EDL52586.1| NifR3/Smm1 family protein [Vibrio shilonii AK1]
Length = 315
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 129/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E ++ + +VPV+VK RIG+DD DSY L
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPELVAECVAAMKEVVDVPVTVKTRIGIDDQDSYEFLTR 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS + F IH+RKA L+G+SP ENR IPPL Y Y + +DFP L +NGG+
Sbjct: 138 FVSLVSEKAGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKKDFPHLQIAVNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L K VM+GR AYQNP Y L VD I+G + R+QVVE+ Y +
Sbjct: 198 KTLEESLEHL-KHLDGVMIGREAYQNP-YILAQVDQLIFGLDTPVKKRKQVVEEMYPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L N ++ + + ++ F + PG ++R LE + IP
Sbjct: 256 RQLA----NGSYLGHISRHMIGLFQAMPGARQWRRYISENAHKKGAGIEVLETALAKIP 310
>gi|399154285|ref|ZP_10754352.1| tRNA-dihydrouridine synthase A [gamma proteobacterium SCGC
AAA007-O20]
Length = 317
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LM +P V + + +++PVSVK RIG+DD ++Y+QL DF+
Sbjct: 92 GCPSDRVLS-GSFGACLMKEPDLVASCVESMIDASDIPVSVKSRIGIDDMETYDQLSDFV 150
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
++ +HFIIH+RKA L G+SP ENRTIPPL Y + Y L +DFP L TLNGGI
Sbjct: 151 SRIHE-KGCQHFIIHARKAWLQGLSPKENRTIPPLNYPWVYQLKKDFPQLKITLNGGITE 209
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+EV L VM+GRA Y P Y L +D+ ++G TR QV+ Y Y I
Sbjct: 210 CNEVVEHLGH-VDGVMLGRAIYHQP-YLLADIDSRVFGKKGISRTRDQVLIDYMSY---I 264
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
P +R + + +L +H + F+R
Sbjct: 265 KQQLKEGVP-IRAMTRHILGLYHGQNNANFFRR 296
>gi|343518517|ref|ZP_08755507.1| tRNA dihydrouridine synthase A [Haemophilus pittmaniae HK 85]
gi|343393432|gb|EGV05987.1| tRNA dihydrouridine synthase A [Haemophilus pittmaniae HK 85]
Length = 328
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 135/241 (56%), Gaps = 19/241 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM VG + + A ++PV+VK RIG+D+ DSY L D
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVGACVQAMQAEVDIPVTVKTRIGIDELDSYEFLTD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI ++ + R FI+H+RKA L+G+SP ENR IPPL Y Y L DFP+L +NGGI
Sbjct: 155 FIARIQQ-AGCREFIVHARKAWLSGLSPKENREIPPLDYARVYRLKADFPELKIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L + VMVGR AYQNP LG VD A++ + ++ RQ V Y +
Sbjct: 214 KTLEEMQTHL-QFVDGVMVGREAYQNP-SLLGGVDRALFDPNAPLISARQAVTAMFPYLE 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
A L G Y N+ +++P+L F G ++R KA A + +T SF+
Sbjct: 272 AQLSQGVYLNH------LIRPMLGAFQQVKGARQWRRYLSENAHKAGAGVEVVETALSFV 325
Query: 234 E 234
E
Sbjct: 326 E 326
>gi|68249213|ref|YP_248325.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 86-028NP]
gi|68057412|gb|AAX87665.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 86-028NP]
Length = 327
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 133/239 (55%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 155 FIEKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQLKRDFPHLTIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LG +D A++ ++ +T + V+ Y +
Sbjct: 214 KTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAAIVTAHEAVQSMLPYIE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L N H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 272 QQL----NQGIHLNHIVRHMLGAFQNCKGARQWRRYLSENAFKQGAGVEVIETALSFVE 326
>gi|90581341|ref|ZP_01237137.1| putative NifR3/Smm1 family protein [Photobacterium angustum S14]
gi|90437451|gb|EAS62646.1| putative NifR3/Smm1 family protein [Photobacterium angustum S14]
Length = 346
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 125/215 (58%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 110 NVGCPSDRVQ-NGMFGACLMGEAELVAQCVTAMRDVVDIPVTVKTRIGIDDQDSYEFLKD 168
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI+ VS +F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGGI
Sbjct: 169 FIHVVSEKGGCDNFTIHARKAWLSGLSPKENREIPPLDYPRVYQLKQDFAHLTMAINGGI 228
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T +E+ L K VMVGR AYQ+P Y + VD ++G+ + RR+VVE Y +
Sbjct: 229 KTFEEMEEHL-KHMDGVMVGREAYQSP-YLMAEVDQRLFGSERPVMKRREVVEAMYPYIE 286
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L N ++ + + +L F S PG ++R
Sbjct: 287 KQLA----NGSYLGHITRHMLGLFQSMPGARQWRR 317
>gi|424658273|ref|ZP_18095531.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-16]
gi|408055444|gb|EKG90374.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-16]
Length = 316
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQ 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 138 FIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLNYPRAYQIKRDFPHLTIAVNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 198 KSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 256 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 310
>gi|229525073|ref|ZP_04414478.1| tRNA dihydrouridine synthase A [Vibrio cholerae bv. albensis VL426]
gi|229338654|gb|EEO03671.1| tRNA dihydrouridine synthase A [Vibrio cholerae bv. albensis VL426]
Length = 327
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQ 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 149 FIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 209 KSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 267 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 321
>gi|255747176|ref|ZP_05421119.1| tRNA dihydrouridine synthase A [Vibrio cholera CIRS 101]
gi|262147248|ref|ZP_06028049.1| tRNA dihydrouridine synthase A [Vibrio cholerae INDRE 91/1]
gi|262166864|ref|ZP_06034586.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC27]
gi|262190629|ref|ZP_06048865.1| tRNA dihydrouridine synthase A [Vibrio cholerae CT 5369-93]
gi|384423684|ref|YP_005633042.1| tRNA dihydrouridine synthase A [Vibrio cholerae LMA3984-4]
gi|417811453|ref|ZP_12458115.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-49A2]
gi|417815223|ref|ZP_12461859.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HCUF01]
gi|417819263|ref|ZP_12465881.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE39]
gi|418336243|ref|ZP_12945143.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-23A1]
gi|418342624|ref|ZP_12949426.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-28A1]
gi|418356574|ref|ZP_12959291.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-61A1]
gi|419824849|ref|ZP_14348357.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1033(6)]
gi|419835325|ref|ZP_14358771.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46B1]
gi|421315620|ref|ZP_15766193.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1032(5)]
gi|421319164|ref|ZP_15769724.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1038(11)]
gi|421323199|ref|ZP_15773729.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1041(14)]
gi|421330603|ref|ZP_15781086.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1046(19)]
gi|421334200|ref|ZP_15784671.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1048(21)]
gi|421338101|ref|ZP_15788541.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-20A2]
gi|421341907|ref|ZP_15792315.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43B1]
gi|421348846|ref|ZP_15799220.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46A1]
gi|421356363|ref|ZP_15806692.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-45]
gi|422305806|ref|ZP_16392994.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1035(8)]
gi|422890417|ref|ZP_16932844.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-40A1]
gi|422901216|ref|ZP_16936596.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48A1]
gi|422905402|ref|ZP_16940261.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-70A1]
gi|422912122|ref|ZP_16946653.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HFU-02]
gi|422921629|ref|ZP_16954842.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
BJG-01]
gi|422924600|ref|ZP_16957641.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-38A1]
gi|423143649|ref|ZP_17131268.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-19A1]
gi|423148632|ref|ZP_17135995.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-21A1]
gi|423152408|ref|ZP_17139626.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-22A1]
gi|423155207|ref|ZP_17142347.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-32A1]
gi|423159066|ref|ZP_17146041.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-33A2]
gi|423163743|ref|ZP_17150541.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48B2]
gi|423729763|ref|ZP_17703086.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A1]
gi|423733686|ref|ZP_17706903.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41B1]
gi|423746985|ref|ZP_17711274.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-50A2]
gi|423891595|ref|ZP_17725288.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62A1]
gi|423926371|ref|ZP_17729905.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-77A1]
gi|423946111|ref|ZP_17733325.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-40]
gi|423975254|ref|ZP_17736873.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-46]
gi|424000926|ref|ZP_17744020.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A2]
gi|424005086|ref|ZP_17748075.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-37A1]
gi|424007916|ref|ZP_17750872.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-44C1]
gi|424022881|ref|ZP_17762549.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62B1]
gi|424589656|ref|ZP_18029104.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1037(10)]
gi|424593901|ref|ZP_18033245.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1040(13)]
gi|424597835|ref|ZP_18037038.1| tRNA dihydrouridine synthase A family protein [Vibrio Cholerae
CP1044(17)]
gi|424600600|ref|ZP_18039760.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1047(20)]
gi|424605516|ref|ZP_18044485.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1050(23)]
gi|424609233|ref|ZP_18048097.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-39A1]
gi|424612151|ref|ZP_18050963.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41A1]
gi|424616029|ref|ZP_18054725.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-42A1]
gi|424620789|ref|ZP_18059321.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-47A1]
gi|424643609|ref|ZP_18081368.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-56A2]
gi|424651529|ref|ZP_18089058.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-57A2]
gi|424655476|ref|ZP_18092784.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A2]
gi|429885245|ref|ZP_19366841.1| tRNA dihydrouridine synthase A [Vibrio cholerae PS15]
gi|440712312|ref|ZP_20892935.1| tRNA dihydrouridine synthase A [Vibrio cholerae 4260B]
gi|443502428|ref|ZP_21069422.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-64A1]
gi|443506335|ref|ZP_21073134.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-65A1]
gi|443510171|ref|ZP_21076844.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-67A1]
gi|443514007|ref|ZP_21080553.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-68A1]
gi|443517820|ref|ZP_21084244.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-71A1]
gi|443522402|ref|ZP_21088653.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-72A2]
gi|443529332|ref|ZP_21095350.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-7A1]
gi|443534069|ref|ZP_21099993.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-80A1]
gi|443536739|ref|ZP_21102598.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A1]
gi|449054390|ref|ZP_21733058.1| tRNA dihydrouridine synthase A [Vibrio cholerae O1 str. Inaba
G4222]
gi|255735225|gb|EET90627.1| tRNA dihydrouridine synthase A [Vibrio cholera CIRS 101]
gi|262024694|gb|EEY43373.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC27]
gi|262031308|gb|EEY49921.1| tRNA dihydrouridine synthase A [Vibrio cholerae INDRE 91/1]
gi|262033494|gb|EEY51996.1| tRNA dihydrouridine synthase A [Vibrio cholerae CT 5369-93]
gi|327483237|gb|AEA77644.1| tRNA dihydrouridine synthase A [Vibrio cholerae LMA3984-4]
gi|340042793|gb|EGR03757.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE39]
gi|340044179|gb|EGR05133.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HCUF01]
gi|340045270|gb|EGR06215.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-49A2]
gi|341625864|gb|EGS51287.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-70A1]
gi|341627287|gb|EGS52606.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48A1]
gi|341627856|gb|EGS53147.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-40A1]
gi|341641404|gb|EGS65957.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HFU-02]
gi|341648380|gb|EGS72441.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
BJG-01]
gi|341648777|gb|EGS72812.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-38A1]
gi|356422305|gb|EHH75783.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-21A1]
gi|356426972|gb|EHH80250.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-19A1]
gi|356433419|gb|EHH86609.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-23A1]
gi|356434893|gb|EHH88056.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-22A1]
gi|356438189|gb|EHH91237.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-28A1]
gi|356443560|gb|EHH96380.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-32A1]
gi|356450670|gb|EHI03386.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-33A2]
gi|356451375|gb|EHI04062.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-61A1]
gi|356456564|gb|EHI09160.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48B2]
gi|395922886|gb|EJH33700.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1032(5)]
gi|395924059|gb|EJH34869.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1041(14)]
gi|395925938|gb|EJH36731.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1038(11)]
gi|395934998|gb|EJH45734.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1046(19)]
gi|395937960|gb|EJH48666.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1048(21)]
gi|395939138|gb|EJH49822.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46A1]
gi|395946601|gb|EJH57263.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-20A2]
gi|395946630|gb|EJH57291.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43B1]
gi|395949073|gb|EJH59706.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-45]
gi|395964169|gb|EJH74408.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-56A2]
gi|395964343|gb|EJH74572.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-57A2]
gi|395967285|gb|EJH77382.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-42A1]
gi|395975825|gb|EJH85300.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-47A1]
gi|395979547|gb|EJH88895.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1047(20)]
gi|408010284|gb|EKG48152.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-39A1]
gi|408017232|gb|EKG54749.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41A1]
gi|408036766|gb|EKG73185.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1037(10)]
gi|408037651|gb|EKG74036.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1040(13)]
gi|408045146|gb|EKG81011.1| tRNA dihydrouridine synthase A family protein [Vibrio Cholerae
CP1044(17)]
gi|408047091|gb|EKG82746.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1050(23)]
gi|408057830|gb|EKG92664.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A2]
gi|408611999|gb|EKK85350.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1033(6)]
gi|408627872|gb|EKL00664.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A1]
gi|408628064|gb|EKL00841.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1035(8)]
gi|408631968|gb|EKL04480.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41B1]
gi|408643238|gb|EKL14972.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-50A2]
gi|408659229|gb|EKL30282.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-77A1]
gi|408660151|gb|EKL31177.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62A1]
gi|408662188|gb|EKL33157.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-40]
gi|408666288|gb|EKL37083.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-46]
gi|408849421|gb|EKL89440.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-37A1]
gi|408849877|gb|EKL89877.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A2]
gi|408859105|gb|EKL98772.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46B1]
gi|408867001|gb|EKM06364.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-44C1]
gi|408874802|gb|EKM13969.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62B1]
gi|429227961|gb|EKY33916.1| tRNA dihydrouridine synthase A [Vibrio cholerae PS15]
gi|439972085|gb|ELP48390.1| tRNA dihydrouridine synthase A [Vibrio cholerae 4260B]
gi|443433213|gb|ELS75729.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-64A1]
gi|443437045|gb|ELS83153.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-65A1]
gi|443440877|gb|ELS90557.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-67A1]
gi|443444697|gb|ELS97964.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-68A1]
gi|443448535|gb|ELT05163.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-71A1]
gi|443451593|gb|ELT11846.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-72A2]
gi|443459900|gb|ELT27293.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-7A1]
gi|443462762|gb|ELT33789.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-80A1]
gi|443467741|gb|ELT42396.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A1]
gi|448266183|gb|EMB03413.1| tRNA dihydrouridine synthase A [Vibrio cholerae O1 str. Inaba
G4222]
Length = 316
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQ 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 138 FIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 198 KSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 256 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 310
>gi|375132152|ref|YP_004994253.1| tRNA-dihydrouridine synthase A [Vibrio furnissii NCTC 11218]
gi|315181327|gb|ADT88241.1| tRNA-dihydrouridine synthase A [Vibrio furnissii NCTC 11218]
Length = 319
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 131/244 (53%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 82 NVGCPSDRVQ-NGRFGACLMAEPELVAQCVAAMKAVVDIPVTVKTRIGIDDQDSYEFLTH 140
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DFP LT +NGG+
Sbjct: 141 FVTVVSEQGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKQDFPQLTIAVNGGV 200
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E L+ VM+GR AYQ+P Y L VD I+G + R QVV++ Y +
Sbjct: 201 KSLAEAKEHLQH-LDGVMIGREAYQSP-YLLAEVDQQIFGLDTPVKKRSQVVQEMYPYIE 258
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L G+ H + + +L F + PG ++R +E+ + IP
Sbjct: 259 QQLAQ-GSYLGH---ITRHMLGLFQNMPGARQWRRHISENAHKAGAGIEVVEQALAKIPY 314
Query: 243 SVLD 246
LD
Sbjct: 315 QELD 318
>gi|419828953|ref|ZP_14352443.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-1A2]
gi|419831734|ref|ZP_14355202.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-61A2]
gi|422916116|ref|ZP_16950458.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-02A1]
gi|423815746|ref|ZP_17715063.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55C2]
gi|423847825|ref|ZP_17718849.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-59A1]
gi|423878717|ref|ZP_17722456.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-60A1]
gi|423996536|ref|ZP_17739803.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-02C1]
gi|424015234|ref|ZP_17755085.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55B2]
gi|424018349|ref|ZP_17758152.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-59B1]
gi|424623722|ref|ZP_18062203.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-50A1]
gi|424628297|ref|ZP_18066607.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-51A1]
gi|424632249|ref|ZP_18070370.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-52A1]
gi|424635338|ref|ZP_18073363.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55A1]
gi|424639130|ref|ZP_18077031.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-56A1]
gi|424647413|ref|ZP_18085094.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-57A1]
gi|443526268|ref|ZP_21092355.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-78A1]
gi|341641086|gb|EGS65654.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-02A1]
gi|408016438|gb|EKG53985.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-50A1]
gi|408021790|gb|EKG59026.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-52A1]
gi|408027801|gb|EKG64749.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-56A1]
gi|408027886|gb|EKG64829.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55A1]
gi|408037524|gb|EKG73915.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-57A1]
gi|408059398|gb|EKG94163.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-51A1]
gi|408622550|gb|EKK95533.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-1A2]
gi|408636924|gb|EKL09041.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55C2]
gi|408644304|gb|EKL16001.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-60A1]
gi|408645429|gb|EKL17082.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-59A1]
gi|408652383|gb|EKL23603.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-61A2]
gi|408854854|gb|EKL94598.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-02C1]
gi|408862210|gb|EKM01749.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55B2]
gi|408870656|gb|EKM09931.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-59B1]
gi|443455386|gb|ELT19166.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-78A1]
Length = 316
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQ 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 138 FIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 198 KSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 256 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 310
>gi|15640406|ref|NP_230033.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121590952|ref|ZP_01678272.1| TIM-barrel protein, yjbN family [Vibrio cholerae 2740-80]
gi|121729744|ref|ZP_01682184.1| TIM-barrel protein, yjbN family [Vibrio cholerae V52]
gi|147675235|ref|YP_001218647.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O395]
gi|153820423|ref|ZP_01973090.1| TIM-barrel protein, yjbN family [Vibrio cholerae NCTC 8457]
gi|153823513|ref|ZP_01976180.1| TIM-barrel protein, yjbN family [Vibrio cholerae B33]
gi|153827262|ref|ZP_01979929.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-2]
gi|153830467|ref|ZP_01983134.1| TIM-barrel protein, yjbN family [Vibrio cholerae 623-39]
gi|227080591|ref|YP_002809142.1| tRNA-dihydrouridine synthase A [Vibrio cholerae M66-2]
gi|227116785|ref|YP_002818681.1| NifR3/Smm1 family protein [Vibrio cholerae O395]
gi|229504962|ref|ZP_04394473.1| tRNA dihydrouridine synthase A [Vibrio cholerae BX 330286]
gi|229508600|ref|ZP_04398096.1| tRNA dihydrouridine synthase A [Vibrio cholerae B33]
gi|229516011|ref|ZP_04405462.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC9]
gi|229526966|ref|ZP_04416363.1| tRNA dihydrouridine synthase A [Vibrio cholerae 12129(1)]
gi|229606339|ref|YP_002876987.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MJ-1236]
gi|254286198|ref|ZP_04961157.1| TIM-barrel protein, yjbN family [Vibrio cholerae AM-19226]
gi|254851689|ref|ZP_05241039.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MO10]
gi|298501275|ref|ZP_07011073.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MAK 757]
gi|360037019|ref|YP_004938782.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O1 str.
2010EL-1786]
gi|379740257|ref|YP_005332226.1| tRNA-dihydrouridine synthase A [Vibrio cholerae IEC224]
gi|418331085|ref|ZP_12942036.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-06A1]
gi|418347786|ref|ZP_12952523.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43A1]
gi|421327606|ref|ZP_15778123.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1042(15)]
gi|424025899|ref|ZP_17765520.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-69A1]
gi|38605061|sp|Q9KUX9.1|DUSA_VIBCH RecName: Full=tRNA-dihydrouridine synthase A
gi|9654797|gb|AAF93552.1| NifR3/Smm1 family protein [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121547178|gb|EAX57305.1| TIM-barrel protein, yjbN family [Vibrio cholerae 2740-80]
gi|121628529|gb|EAX61013.1| TIM-barrel protein, yjbN family [Vibrio cholerae V52]
gi|126509034|gb|EAZ71628.1| TIM-barrel protein, yjbN family [Vibrio cholerae NCTC 8457]
gi|126518958|gb|EAZ76181.1| TIM-barrel protein, yjbN family [Vibrio cholerae B33]
gi|146317118|gb|ABQ21657.1| TIM-barrel protein, yjbN family [Vibrio cholerae O395]
gi|148874069|gb|EDL72204.1| TIM-barrel protein, yjbN family [Vibrio cholerae 623-39]
gi|149738810|gb|EDM53152.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-2]
gi|150423613|gb|EDN15555.1| TIM-barrel protein, yjbN family [Vibrio cholerae AM-19226]
gi|227008479|gb|ACP04691.1| NifR3/Smm1 family protein [Vibrio cholerae M66-2]
gi|227012235|gb|ACP08445.1| NifR3/Smm1 family protein [Vibrio cholerae O395]
gi|229335578|gb|EEO01058.1| tRNA dihydrouridine synthase A [Vibrio cholerae 12129(1)]
gi|229346914|gb|EEO11881.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC9]
gi|229354368|gb|EEO19295.1| tRNA dihydrouridine synthase A [Vibrio cholerae B33]
gi|229358020|gb|EEO22936.1| tRNA dihydrouridine synthase A [Vibrio cholerae BX 330286]
gi|229368994|gb|ACQ59417.1| tRNA dihydrouridine synthase A [Vibrio cholerae MJ-1236]
gi|254847394|gb|EET25808.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MO10]
gi|297540029|gb|EFH76092.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MAK 757]
gi|356421741|gb|EHH75232.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-06A1]
gi|356448253|gb|EHI01033.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43A1]
gi|356648173|gb|AET28228.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O1 str.
2010EL-1786]
gi|378793767|gb|AFC57238.1| tRNA-dihydrouridine synthase A [Vibrio cholerae IEC224]
gi|395933128|gb|EJH43870.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1042(15)]
gi|408881554|gb|EKM20431.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-69A1]
Length = 327
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQ 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 149 FIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 209 KSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 267 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 321
>gi|153216666|ref|ZP_01950573.1| TIM-barrel protein, yjbN family [Vibrio cholerae 1587]
gi|124114177|gb|EAY32997.1| TIM-barrel protein, yjbN family [Vibrio cholerae 1587]
Length = 327
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMGEPDLVAECVATMRAVVDIPVTVKTRIGIDDQDSYEFLTQ 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 149 FIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 209 KSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 267 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 321
>gi|153803249|ref|ZP_01957835.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-3]
gi|229519914|ref|ZP_04409345.1| tRNA dihydrouridine synthase A [Vibrio cholerae TM 11079-80]
gi|124121229|gb|EAY39972.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-3]
gi|229343042|gb|EEO08029.1| tRNA dihydrouridine synthase A [Vibrio cholerae TM 11079-80]
Length = 327
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQ 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 149 FIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 209 KSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 267 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 321
>gi|344943243|ref|ZP_08782530.1| TIM-barrel protein, yjbN family [Methylobacter tundripaludum SV96]
gi|344260530|gb|EGW20802.1| TIM-barrel protein, yjbN family [Methylobacter tundripaludum SV96]
Length = 331
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 11/235 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E ++ +A ++PV+VK RIG+D+ DSY +L
Sbjct: 99 NVGCPSDRVQ-NGRFGACLMAEPELVAECVAAMAQAVSIPVTVKSRIGIDERDSYEELVH 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FIIH+RKA L+G+SP +NR +PPL+Y+ Y + +DFP L LNGGI
Sbjct: 158 FVSTVAD-AGCETFIIHARKAWLSGLSPKQNRDVPPLRYDVAYQIKQDFPQLEIILNGGI 216
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+D+ A L AH VMVGR AY NP Y L VD YG +R +++ Y
Sbjct: 217 TTLDQAEAVL---AHVDGVMVGREAYHNP-YLLAEVDRRFYGESKEPRSREMIMDLLIPY 272
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPG-NGLFKRKADAAFQTCKTVKSFLE 234
L N+ + ++ + +L FH EPG G + ++ A + +K LE
Sbjct: 273 IQQQLEL--NDGVRLNNISRHILGLFHGEPGARGWRRHLSENACKPGADIKVILE 325
>gi|357405395|ref|YP_004917319.1| tRNA-dihydrouridine synthase A [Methylomicrobium alcaliphilum 20Z]
gi|351718060|emb|CCE23725.1| tRNA-dihydrouridine synthase A [Methylomicrobium alcaliphilum 20Z]
Length = 347
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 121/213 (56%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM P+ V E +S + ++PV+VKCRIG+DD DSY L FI
Sbjct: 118 GCPSDRVQ-NGRFGACLMATPELVAECLSAMNRVVSIPVTVKCRIGIDDQDSYEALHRFI 176
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS + R FIIH+RKA L+G+SP ENR IPPL+Y+ Y + RDFP L LNGG+ +
Sbjct: 177 TLVSE-AGCRVFIIHARKAWLSGLSPKENREIPPLRYDVVYRIKRDFPKLEIILNGGVRS 235
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+D+ + + VMVGR YQNP Y L VD Y + +R ++VE Y
Sbjct: 236 LDQA-LVINDEVNGVMVGREVYQNP-YLLAGVDELFYRDFHAIKSREEIVEALLTY---- 289
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+G + + + LL FH PG ++R
Sbjct: 290 VGEQLKQGVRLYSIARHLLGLFHGVPGARSWRR 322
>gi|417823509|ref|ZP_12470103.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE48]
gi|340048480|gb|EGR09400.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE48]
Length = 316
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + + ++PV+VK RIG+DD DSY L
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMRSVVDIPVTVKTRIGIDDQDSYEFLTQ 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 138 FIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 198 KSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 256 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 310
>gi|407774714|ref|ZP_11122011.1| tRNA-dihydrouridine synthase A [Thalassospira profundimaris WP0211]
gi|407282196|gb|EKF07755.1| tRNA-dihydrouridine synthase A [Thalassospira profundimaris WP0211]
Length = 331
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 130/245 (53%), Gaps = 15/245 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G FG LM P V + + + ++ PV+VK RIG+DD + Y L
Sbjct: 91 NCGCPSDRVQ-NGAFGACLMATPDVVANCVKSMISASDAPVTVKNRIGIDDQEDYPSLKR 149
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F V+ + + FI+H+RKA L G+SP ENR +PPLKYE Y L ++FP+L +NGGI
Sbjct: 150 FTETVAE-AGCKTFIVHARKAWLKGLSPKENREVPPLKYELVYQLKQEFPELEILINGGI 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE +A L K VM+GR AYQNP Y L VD YG + L+R QVVE Y +
Sbjct: 209 KTLDETDAHL-KHVDGVMIGREAYQNP-YVLADVDRRFYGDDAKPLSRHQVVEAMLPYIE 266
Query: 183 AIL----GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIV 238
L GT G+ V + +L F G ++R + E +
Sbjct: 267 EHLKEEHGTIGH-------VTRHMLGLFQQMRGAKQWRRYLSENAHRKGAGTEVVREALA 319
Query: 239 AIPDS 243
+P+
Sbjct: 320 LVPEQ 324
>gi|262393119|ref|YP_003284973.1| tRNA dihydrouridine synthase A [Vibrio sp. Ex25]
gi|262336713|gb|ACY50508.1| tRNA dihydrouridine synthase A [Vibrio sp. Ex25]
Length = 315
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKGVVDIPVTVKTRIGIDDQDSYEFLTD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 138 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKQDFSHLTIAINGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +
Sbjct: 198 KSLEEAKAHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSNAPVKKRSEIVEEMYPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A L ++ + + +L F S PG ++R + L++ + IP
Sbjct: 256 AQLA----KGAYLGHITRHMLGLFQSMPGARQWRRHISENAHKPGSGLEVLQDALAKIPK 311
Query: 243 SV 244
+
Sbjct: 312 EL 313
>gi|300115485|ref|YP_003762060.1| TIM-barrel protein [Nitrosococcus watsonii C-113]
gi|299541422|gb|ADJ29739.1| TIM-barrel protein, yjbN family [Nitrosococcus watsonii C-113]
Length = 325
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 124/215 (57%), Gaps = 12/215 (5%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LM +P+ V E ++ +A T +PV+VK RIG+D+ DSY L FI
Sbjct: 96 GCPSNRVQS-GRFGACLMAEPQLVAECVAAMAQATQIPVTVKTRIGIDEQDSYEALSSFI 154
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ + R FIIH+RKA L G+SP ENR PPL+Y+ A+ RDFP L +NGGI T
Sbjct: 155 STVAQ-AGCRTFIIHARKAWLQGLSPKENREKPPLRYDVVRAIKRDFPQLEVMINGGITT 213
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+ EV+ L + VM+GRAAY NP Y L VD YG + TR +++E + Y
Sbjct: 214 LKEVSEHL-ELLDGVMIGRAAYHNP-YLLAPVDQRFYGDFRALPTRHEIIEAFLPYAAEQ 271
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G Y + + + +L F +PG ++R
Sbjct: 272 LARGVY------LSRMTRHILGLFQGQPGARAWRR 300
>gi|422908913|ref|ZP_16943571.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-09]
gi|341637207|gb|EGS61896.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-09]
Length = 316
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQ 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 138 FIDTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 198 KSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 256 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 310
>gi|260767137|ref|ZP_05876081.1| tRNA-dihydrouridine synthase [Vibrio furnissii CIP 102972]
gi|260617858|gb|EEX43033.1| tRNA-dihydrouridine synthase [Vibrio furnissii CIP 102972]
Length = 316
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 131/244 (53%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPELVAQCVAAMKAVVDIPVTVKTRIGIDDQDSYEFLTH 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DFP LT +NGG+
Sbjct: 138 FVTVVSEQGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKQDFPQLTIAVNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E L+ VM+GR AYQ+P Y L VD I+G + R QVV++ Y +
Sbjct: 198 KSLAEAKEHLQH-LDGVMIGREAYQSP-YLLAEVDQQIFGLDTPVKKRSQVVQEMYPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L G+ H + + +L F + PG ++R +E+ + IP
Sbjct: 256 QQLAQ-GSYLGH---ITRHMLGLFQNMPGARQWRRHISENAHKAGAGIEVVEQALAKIPY 311
Query: 243 SVLD 246
LD
Sbjct: 312 QELD 315
>gi|157963384|ref|YP_001503418.1| tRNA-dihydrouridine synthase A [Shewanella pealeana ATCC 700345]
gi|157848384|gb|ABV88883.1| TIM-barrel protein, yjbN family [Shewanella pealeana ATCC 700345]
Length = 328
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 126/215 (58%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E ++ + ++PV+VK RIG+D+ DSY L
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMAEPELVAECVTAMKQVVDIPVTVKTRIGIDEQDSYEFLTQ 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + + FIIH+RKA L G+SP ENR IPPL YE Y L RD+P+L ++NGG+
Sbjct: 152 FIDTVKA-AGCEEFIIHARKAWLQGLSPKENREIPPLDYERVYQLKRDYPELNISINGGV 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VMVGR AYQNP Y L VD + G + ++R V+EK Y +
Sbjct: 211 KTLEECQTHLQH-LDGVMVGREAYQNP-YILAEVDQKLCGIDAPVMSRDAVLEKLLPYIE 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + + + ++ F E G+ +++R
Sbjct: 269 KHLQQGG----RLNHISRHIIGLFQGEVGSRVWRR 299
>gi|91794580|ref|YP_564231.1| tRNA-dihydrouridine synthase A [Shewanella denitrificans OS217]
gi|91716582|gb|ABE56508.1| TIM-barrel protein, yjbN family [Shewanella denitrificans OS217]
Length = 327
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 122/215 (56%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L
Sbjct: 89 NVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTK 147
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V++ F IH+RKA L G+SP ENR IP L Y+ Y L RDFP L +NGGI
Sbjct: 148 FIETVAA-KGCDDFTIHARKAWLQGLSPKENREIPLLDYDRVYQLKRDFPKLNIGINGGI 206
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L + VMVGR AYQNP Y L VDT +YG ++R QV+EK Y +
Sbjct: 207 KTLAEAKLHLTQ-LDGVMVGREAYQNP-YLLAEVDTQLYGVKRDIISREQVIEKMLPYIE 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L T G + + + ++ F G+ ++R
Sbjct: 265 AHLKTGGR----LNHITRHMIGLFQGLAGSRQWRR 295
>gi|307132468|ref|YP_003884484.1| tRNA dihydrouridine synthase A [Dickeya dadantii 3937]
gi|306529997|gb|ADM99927.1| tRNA dihydrouridine synthase A [Dickeya dadantii 3937]
Length = 346
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 122/215 (56%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + ++ + ++PV+VK RIG+DD DSY LCD
Sbjct: 113 NVGCPSDRVQ-NGRFGACLMAEAQLVADCVTAMRERVDIPVTVKTRIGIDDQDSYAFLCD 171
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FI+H+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+
Sbjct: 172 FIRTVSEQGGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPSLTLAINGGV 231
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L+ VMVGR AYQNP L VD ++GA S+ + VV Y +
Sbjct: 232 KTLAEARQHLQH-VDGVMVGREAYQNPG-MLAQVDRELFGADSAAPDQADVVRAMYPYIE 289
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + G + H + + +L F PG ++R
Sbjct: 290 REL-SAGASLGH---ITRHMLGLFQGLPGARQWRR 320
>gi|163803123|ref|ZP_02197007.1| tRNA-dihydrouridine synthase A [Vibrio sp. AND4]
gi|159173115|gb|EDP57947.1| tRNA-dihydrouridine synthase A [Vibrio sp. AND4]
Length = 318
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 125/215 (58%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + +VPV+VK RIG+DDHDSY L D
Sbjct: 82 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDVVDVPVTVKTRIGIDDHDSYQFLTD 140
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 141 FVSIVSEKGGCDQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLTIAINGGV 200
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQ+P Y L VD ++G+ + R Q+VE+ Y +
Sbjct: 201 KSLEEAKEHLQH-LDGVMIGREAYQSP-YLLAFVDQELFGSNAPVKKRSQIVEEMYPYIE 258
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L ++ + + +L F S PG ++R
Sbjct: 259 AQLA----KGAYLGHITRHMLGLFQSMPGARQWRR 289
>gi|16762924|ref|NP_458541.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29144411|ref|NP_807753.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213051927|ref|ZP_03344805.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213424511|ref|ZP_03357308.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213582871|ref|ZP_03364697.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213614451|ref|ZP_03371277.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213647516|ref|ZP_03377569.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|289824651|ref|ZP_06544178.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|378962333|ref|YP_005219819.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|38604946|sp|Q8Z1T1.1|DUSA_SALTI RecName: Full=tRNA-dihydrouridine synthase A
gi|25329941|pir||AB1016 conserved hypothetical protein STY4439 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505231|emb|CAD09227.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29140049|gb|AAO71613.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|374356205|gb|AEZ47966.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
Length = 332
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDTDPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + I D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADAAVLEQALKLIAD 330
>gi|254482016|ref|ZP_05095258.1| tRNA dihydrouridine synthase A subfamily protein [marine gamma
proteobacterium HTCC2148]
gi|214037706|gb|EEB78371.1| tRNA dihydrouridine synthase A subfamily protein [marine gamma
proteobacterium HTCC2148]
Length = 315
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 124/219 (56%), Gaps = 16/219 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P+ V + + + T +PV+VK RIG+DD DSY Q+ D
Sbjct: 80 NCGCPSDRVQS-GMFGACLMAQPELVADGVKAMRDATLLPVTVKHRIGIDDMDSYEQMLD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+RKA L G+SP ENR IPPL Y++ Y L RD PDL +NGGI
Sbjct: 139 FVGPVAD-AGCEVFIVHARKAWLKGLSPKENREIPPLVYDWVYRLKRDLPDLEIVINGGI 197
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+++ L AH VM+GR AYQNPW L VD+ ++G +R V+ Y
Sbjct: 198 QTIEDCEDHL---AHVDGVMIGREAYQNPW-MLAEVDSRLFGIDKVAESRDDVLLGLLPY 253
Query: 181 GDA--ILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ LGT H+ + + +L + PG F+R
Sbjct: 254 VEQQLALGT------HLNHITRHILGLYQGVPGARKFRR 286
>gi|410941943|ref|ZP_11373735.1| tRNA dihydrouridine synthase A [Leptospira noguchii str.
2006001870]
gi|410782937|gb|EKR71936.1| tRNA dihydrouridine synthase A [Leptospira noguchii str.
2006001870]
Length = 347
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 138/244 (56%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E S + + ++P++VKCRIG+ +++ LC
Sbjct: 98 NVGCPSDRVR-EGNFGACLMKTPEKVAELTSAMDISVSIPITVKCRIGIPGKETFEDLCR 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + R FI+H+R A+L G++PA+NR +PPL+Y +L ++FPDL +NGGI
Sbjct: 157 FIECVRQ-TGVRRFIVHARIAILGGLTPAQNRQVPPLRYADVESLKKEFPDLLIEINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L K VM+GRAAY+ P Y VD+ +G S L+RR+++ + + Y +
Sbjct: 216 RTLTSIREKLEKN-DGVMIGRAAYETP-YLFSEVDSLFFGESLSPLSRREILLRMKDYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH V++ +L F+ E G F++ + + K L + I I +
Sbjct: 274 EVILKEKNGKPH--HVLRHMLGLFYGEKGARSFRKILTEGMYSGYS-KDLLFKAIQEISN 330
Query: 243 SVLD 246
LD
Sbjct: 331 DSLD 334
>gi|297582262|ref|ZP_06944177.1| TIM-barrel protein [Vibrio cholerae RC385]
gi|297533520|gb|EFH72366.1| TIM-barrel protein [Vibrio cholerae RC385]
Length = 327
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQ 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 149 FIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 209 KSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 267 REL----SQGTHLGHMTRHMLGVFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 321
>gi|332289875|ref|YP_004420727.1| tRNA-dihydrouridine synthase A [Gallibacterium anatis UMN179]
gi|330432771|gb|AEC17830.1| tRNA-dihydrouridine synthase A [Gallibacterium anatis UMN179]
Length = 326
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 111/174 (63%), Gaps = 4/174 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + N+PV+VK RIG+DD DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGFFGACLMAKADLVAQCIDAMQQRINIPVTVKTRIGIDDLDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KV+++ + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP L +NGGI
Sbjct: 155 FVEKVAAVG-CQDFIIHARKAWLSGLSPKENREIPPLDYARVYQLKRDFPQLKIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEK 176
T++E+ L+ VMVGR AYQNP LG++D A++ ++ +T + VEK
Sbjct: 214 KTIEEIQQHLQY-VDGVMVGREAYQNP-QLLGYIDQALFDPNAAIVTPLEAVEK 265
>gi|289807774|ref|ZP_06538403.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 258
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 127/238 (53%), Gaps = 7/238 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCDFI
Sbjct: 26 GCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFI 84
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI +
Sbjct: 85 NTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKS 144
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 145 LEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDTDPVAVVRAMYPYIERE 202
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + I D
Sbjct: 203 L----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADAAVLEQALKLIAD 256
>gi|254230410|ref|ZP_04923791.1| TIM-barrel protein, YjbN family [Vibrio sp. Ex25]
gi|151937069|gb|EDN55946.1| TIM-barrel protein, YjbN family [Vibrio sp. Ex25]
Length = 354
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 118 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKGVVDIPVTVKTRIGIDDQDSYEFLTD 176
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 177 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKQDFSHLTIAINGGV 236
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +
Sbjct: 237 KSLEEAKAHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSNAPVKKRSEIVEEMYPYIE 294
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A L ++ + + +L F S PG ++R + L++ + IP
Sbjct: 295 AQLA----KGAYLGHITRHMLGLFQSMPGARQWRRHISENAHKPGSGLEVLQDALAKIPK 350
Query: 243 SV 244
+
Sbjct: 351 EL 352
>gi|257464833|ref|ZP_05629204.1| tRNA-dihydrouridine synthase A [Actinobacillus minor 202]
gi|257450493|gb|EEV24536.1| tRNA-dihydrouridine synthase A [Actinobacillus minor 202]
Length = 324
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 135/243 (55%), Gaps = 20/243 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGMFGACLMGKADLVADCIKAMQDAVEIPVTVKHRIGIDELDSYAFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI K+ S FI+H+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI
Sbjct: 152 FIEKIQPYS--NDFIVHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLNISINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L + VM+GR AYQNP LG +D+ I+ +T R+ VEK Y +
Sbjct: 210 KTIEEIKHHL-QFVDGVMIGREAYQNP-SLLGEIDSQIFNENKPLVTAREAVEKMLPYIE 267
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ +++ +L F + G ++R KA A + + SF+
Sbjct: 268 KELAKGVYLNH------IVRHMLGAFQNCKGARQWRRHLSENACKAGAGVEVVEQALSFV 321
Query: 234 EET 236
+E
Sbjct: 322 QEN 324
>gi|294139225|ref|YP_003555203.1| tRNA-dihydrouridine synthase A [Shewanella violacea DSS12]
gi|293325694|dbj|BAJ00425.1| tRNA-dihydrouridine synthase A [Shewanella violacea DSS12]
Length = 329
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 127/215 (59%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +PK V E ++ + ++PV+VK RIG+DD DSY L +
Sbjct: 98 NVGCPSDRVQS-GRFGACLMAEPKLVAECVTAMKQVVDIPVTVKTRIGIDDQDSYEFLSE 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS + FI+H+RKA L G+SP +NR IPPL Y+ Y L +D+PDL ++NGG+
Sbjct: 157 FVDTVSDVG-CDTFIVHARKAWLQGLSPKQNREIPPLDYQRVYRLKKDYPDLHISINGGV 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE + L+ VMVGR AYQNP Y L VD + G+ L+R V++K+ Y +
Sbjct: 216 KTLDECHEHLQH-IDGVMVGREAYQNP-YILAEVDQRLCGSNKPVLSRDAVLDKFIPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + + + + + EPG+ ++R
Sbjct: 274 KHLMDGGR----LNHITRHMTGMYQGEPGSRAWRR 304
>gi|269103588|ref|ZP_06156285.1| putative NifR3/Smm1 family protein [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163486|gb|EEZ41982.1| putative NifR3/Smm1 family protein [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 290
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 132/241 (54%), Gaps = 11/241 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V ++ + ++PV+VK RIG+D+ DSY L D
Sbjct: 54 NVGCPSDRVQ-NGMFGACLMGEAELVAHCVAAMREVVDIPVTVKTRIGIDEQDSYEFLTD 112
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ +F IH+RKA L G+SP ENR IPPL Y Y L RDFP+LT +NGGI
Sbjct: 113 FIGTVAEKGGCDNFTIHARKAWLKGLSPKENREIPPLDYPRVYQLKRDFPELTMGINGGI 172
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T +E+ L+ VMVGR AYQ+P Y + VD ++G+ + RR+VVE Y +
Sbjct: 173 KTFEEMEEHLQH-MDGVMVGREAYQSP-YLMAEVDQRLFGSTKPVMKRREVVEAMYPYIE 230
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
L G+Y + + + +L F + PG ++R + L++ + I
Sbjct: 231 QQLAQGSY------LGHITRHMLGLFQNMPGARQWRRHISENAHKPGSGIEVLQQALAKI 284
Query: 241 P 241
P
Sbjct: 285 P 285
>gi|152978183|ref|YP_001343812.1| tRNA-dihydrouridine synthase A [Actinobacillus succinogenes 130Z]
gi|150839906|gb|ABR73877.1| TIM-barrel protein, yjbN family [Actinobacillus succinogenes 130Z]
Length = 326
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 140/239 (58%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V E ++ + A ++PV+VK RIG+D+ DSY L D
Sbjct: 95 NVGCPSDRVQ-NGMFGACLMAKADLVAECVTKMQAAVSIPVTVKTRIGIDELDSYEFLYD 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F++K+++ + + I+H+RKA L+G+SP ENR IPPL YE Y L RDFP + ++NGGI
Sbjct: 154 FVHKITN-AGCQELIVHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHILISINGGI 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ A L++ VMVGR AYQNP LG++D A++ + +T R+ VE Y +
Sbjct: 213 KTIEEMTAHLQQ-VDGVMVGREAYQNP-SLLGYIDQALFDPTARIVTAREAVENMFPYIE 270
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L N ++ +++ +L F G ++R K A + +T SF+E
Sbjct: 271 QQL----NRGVYLNHIVRHILGAFQGCKGARQWRRYLSENAYKPGADAEVVRTALSFVE 325
>gi|387769798|ref|ZP_10125995.1| tRNA dihydrouridine synthase A [Pasteurella bettyae CCUG 2042]
gi|386905968|gb|EIJ70718.1| tRNA dihydrouridine synthase A [Pasteurella bettyae CCUG 2042]
Length = 325
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 133/240 (55%), Gaps = 19/240 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V E + + ++PV+VK RIG+D+ DSY LC+FI
Sbjct: 96 GCPSDRVQ-NGMFGACLMAKSDLVAECVESMQKVVDIPVTVKTRIGIDELDSYEFLCEFI 154
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + FI+H+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI T
Sbjct: 155 EKVHA-KGCNEFIVHARKAWLSGLSPKENREIPPLNYERVYQLKRDFPQLKISINGGIKT 213
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG +D A++ + +T R+ VEK Y +
Sbjct: 214 IEEILTHLQY-VDGVMVGREAYQNP-SLLGKIDQALFDPNAPIITAREAVEKMLPYIEQQ 271
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
L G + N+ + + +L F + G ++R K A + SF+EE
Sbjct: 272 LSQGIFLNH------IARHMLGAFQNCKGARQWRRHLSENTHKQGAGIEIVTQALSFIEE 325
>gi|288940773|ref|YP_003443013.1| TIM-barrel protein, yjbN family [Allochromatium vinosum DSM 180]
gi|288896145|gb|ADC61981.1| TIM-barrel protein, yjbN family [Allochromatium vinosum DSM 180]
Length = 310
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 123/216 (56%), Gaps = 8/216 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + A VPV+VK RIG+D+ DSY +L D
Sbjct: 80 NVGCPSDRVQ-NGRFGACLMAEPVLVAECVTAMRAAVRVPVTVKHRIGIDERDSYAELVD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++S + I+H+RKA L G+SP ENR IPPL+YE L RDFP L +NGGI
Sbjct: 139 FVGRLSE-AGCDAIIVHARKAWLKGLSPKENRDIPPLRYEIVRDLKRDFPQLPIVINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D L VM+GRAAY NPW L D ++G TRRQV+E + Y +
Sbjct: 198 ETLDAAVDFL-SDLDGVMIGRAAYHNPW-ILAEADRRVFGDTHPAPTRRQVLEAFIPYAE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK 218
L P + + + LL F +PG ++R+
Sbjct: 256 RQLAA---GVP-LNAMSRHLLGLFQGQPGARAWRRR 287
>gi|114765460|ref|ZP_01444570.1| tRNA-dihydrouridine synthase A [Pelagibaca bermudensis HTCC2601]
gi|114542170|gb|EAU45201.1| tRNA-dihydrouridine synthase A [Roseovarius sp. HTCC2601]
Length = 315
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 123/239 (51%), Gaps = 6/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P+ V + ++ + + V+VKCRIGVD+ + + L D
Sbjct: 80 NCGCPSDRVQS-GTFGAVLMRSPELVADCVAAMREAVKIDVTVKCRIGVDEQEPRDVLPD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K+S R +IH+RKA L G+SP ENR IPPL YE + R FP L ++NGGI
Sbjct: 139 FLQKISGAGCER-VVIHARKAWLQGLSPKENRDIPPLDYEIVREMKRAFPQLHVSINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+D A L G VM+GRAAY PW L + D IYG + ++ + V+ Y
Sbjct: 198 TDLDTAEALLADGLDGVMIGRAAYHQPWDILANADARIYGEAAGPVSPEEAVQAMLPY-- 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
+G + + + + + +L F PG ++R +EE + +P
Sbjct: 256 --IGRHLASGGRLHQITRHMLGLFAGRPGARQWRRVLSEGATRDGAGPELVEEALSRVP 312
>gi|262275131|ref|ZP_06052942.1| tRNA dihydrouridine synthase A [Grimontia hollisae CIP 101886]
gi|262221694|gb|EEY73008.1| tRNA dihydrouridine synthase A [Grimontia hollisae CIP 101886]
Length = 315
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 133/241 (55%), Gaps = 11/241 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMGEAELVAQCVAAMKEVVDIPVTVKTRIGIDDQDSYEFLVD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS +F IH+RKA L+G+SP ENR IPPL Y Y L +DFP LT +NGGI
Sbjct: 138 FVRTVSEKGGCDNFTIHARKAWLSGLSPKENREIPPLDYPRVYQLKKDFPHLTMAINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L K VM+GR AYQ+P Y L VD+ ++G+ + + R + V Y +
Sbjct: 198 KSLEEAEAHL-KFMDGVMIGREAYQSP-YLLAEVDSRLFGSDAPIIKRSEAVRAIFPYIE 255
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
A L GTY N+ + + +L F + PG ++R LE + I
Sbjct: 256 AELSKGTYLNH------ISRHMLGLFQNMPGARQWRRYISENAHKPGAGTEVLEAALANI 309
Query: 241 P 241
P
Sbjct: 310 P 310
>gi|409991326|ref|ZP_11274597.1| tRNA-dihydrouridine synthase A [Arthrospira platensis str. Paraca]
gi|409937804|gb|EKN79197.1| tRNA-dihydrouridine synthase A [Arthrospira platensis str. Paraca]
Length = 331
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V EA+S + N+PV+VK RIG+D+ D Y +
Sbjct: 101 NVGCPSARVQ-NGNFGACLMAEPERVAEAISAMKKAVNIPVTVKHRIGIDNRDRYEDMTA 159
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V + S + F +H+RKA L G+SP +NR IPPL+Y + L +FP LT +NGG
Sbjct: 160 FV-RVVAASGCQRFTVHARKAWLQGLSPKDNRNIPPLRYGDVHRLKAEFPHLTIEINGGF 218
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++V L+K VM+GRAAY NP Y D IYG + TR QVVE+ Y +
Sbjct: 219 TTLEQVKQQLKK-VDAVMMGRAAYDNP-YLFAIADREIYGDNINPPTRHQVVEQMLPYIE 276
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + V++ +L F +PG +KR
Sbjct: 277 NWLSQGG----RLNSVVRHILQLFAGQPGTKAWKR 307
>gi|449146249|ref|ZP_21777038.1| NifR3/Smm1 family protein [Vibrio mimicus CAIM 602]
gi|449078095|gb|EMB49040.1| NifR3/Smm1 family protein [Vibrio mimicus CAIM 602]
Length = 327
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + + ++PV+VK RIG+DD DSY L
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMAEPDLVAECIAAMRSVVDIPVTVKTRIGIDDQDSYEFLTQ 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + R+FP LT +NGG+
Sbjct: 149 FISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRNFPHLTIAVNGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 209 KTLEEAQQHLQY-LDGVMIGREAYQNP-YLLAEVDQQIFGLDTPVKKRSQVIHEMMPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 267 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 321
>gi|409201210|ref|ZP_11229413.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas flavipulchra JG1]
Length = 337
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 133/241 (55%), Gaps = 19/241 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P+ V + ++ + A N+PV+VK RIG+D+ DSY L I
Sbjct: 107 GCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKAEVNIPVTVKTRIGIDEQDSYEFLTALI 165
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+ S FIIH+RKA L G+SP ENR IPPL Y Y L +D+PDL ++NGG+ T
Sbjct: 166 -EASQAVGCDDFIIHARKAWLQGLSPKENREIPPLDYPRVYQLKKDYPDLHISINGGVKT 224
Query: 125 VDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++E L AH VMVGR AY NP + L VD +YG + TR QVV Y +
Sbjct: 225 LEECQHHL---AHLDGVMVGREAYSNP-FMLSQVDELLYGEAAFTQTRHQVVRSMYGYFE 280
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
+ + G N H + + +L F ++PG F+R K +A + + SF+ E
Sbjct: 281 SEMSN-GANFWH---IARHMLGIFQNQPGARGFRRHLSENGHKKEAGIEVMEKALSFVPE 336
Query: 236 T 236
Sbjct: 337 V 337
>gi|291568895|dbj|BAI91167.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 337
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V EA+S + N+PV+VK RIG+D+ D Y +
Sbjct: 107 NVGCPSARVQ-NGNFGACLMAEPERVAEAISAMKKAVNIPVTVKHRIGIDNRDRYEDMTA 165
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V + S + F +H+RKA L G+SP +NR IPPL+Y + L +FP LT +NGG
Sbjct: 166 FV-RVVAASGCQRFTVHARKAWLQGLSPKDNRNIPPLRYGDVHRLKAEFPHLTIEINGGF 224
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++V L+K VM+GRAAY NP Y D IYG + TR QVVE+ Y +
Sbjct: 225 TTLEQVKQQLKK-VDAVMMGRAAYDNP-YLFAIADREIYGDNINPPTRHQVVEQMLPYIE 282
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + V++ +L F +PG +KR
Sbjct: 283 NWLSQGG----RLNSVVRHILQLFAGQPGTKAWKR 313
>gi|326795079|ref|YP_004312899.1| yjbN family TIM-barrel protein [Marinomonas mediterranea MMB-1]
gi|326545843|gb|ADZ91063.1| TIM-barrel protein, yjbN family [Marinomonas mediterranea MMB-1]
Length = 348
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 124/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P V + + + T++PV++K RIG+DD Y+ L D
Sbjct: 109 NVGCPSDRVQ-NSLIGACLMAYPDKVADILKAMQDATSIPVTIKHRIGLDDQQEYSILRD 167
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + + FI+H+R A+L G+SP ENR IPPLKY+Y Y L +DFPDL +NGGI
Sbjct: 168 FVGTVAD-TGIQTFIVHARNAILQGLSPKENREIPPLKYDYVYQLKKDFPDLEIIINGGI 226
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE + L VM+GR AY NPW L +DT +YGA + R + +E++ Y +
Sbjct: 227 KTIDETISHL-DHVDGVMMGREAYNNPW-ILSDIDTKVYGASACVNNRFEALERFVPYVE 284
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G H + + +L FH PG F+R
Sbjct: 285 EQLAK-GERLMH---MTRHILGIFHGLPGGKQFRR 315
>gi|89093370|ref|ZP_01166319.1| NIFR3-like protein [Neptuniibacter caesariensis]
gi|89082349|gb|EAR61572.1| NIFR3-like protein [Oceanospirillum sp. MED92]
Length = 328
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 124/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P+ V E + + A ++PV+VK R G+DD DSY +L
Sbjct: 96 NVGCPSDRVQNN-MIGACLMAHPQLVSECLEKMQAAVDIPVTVKHRQGIDDMDSYEELVQ 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V S + FIIH+RKA+L G+SP ENR IPPLKYE+ Y + ++FP+L +NGGI
Sbjct: 155 FVDTVRQ-SGCKVFIIHARKAILQGLSPKENRDIPPLKYEWVYQIKQEFPELEVHINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE + L+ VM+GR AYQNP Y L VD YGA S ++R+ Y
Sbjct: 214 KTIDECHTHLQH-VDGVMLGREAYQNP-YLLADVDREFYGADSEKISRKAAALAMVPY-- 269
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
I P + V++ +L FH++ G F+R
Sbjct: 270 -IEQQMEQGVP-LNHVVRHMLGLFHAQRGGKQFRR 302
>gi|119492928|ref|ZP_01623958.1| hypothetical protein L8106_26412 [Lyngbya sp. PCC 8106]
gi|119452854|gb|EAW34028.1| hypothetical protein L8106_26412 [Lyngbya sp. PCC 8106]
Length = 338
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 122/215 (56%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V EA+S + +PV++K RIG+DD D Y + +
Sbjct: 104 NVGCPSSRVQD-GNFGACLMAQPQRVAEAVSKMQQRVKIPVTIKHRIGIDDRDRYEDMAN 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ S S + F +H+RKA L G+SP +NR IPPL+YE + L ++FP L +NGG+
Sbjct: 163 FV-EIVSQSGCQQFTVHARKAWLQGLSPKDNRNIPPLRYEDVHQLKQEFPHLFIEINGGL 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+V+ L K VM+GRAAY NP Y D YG ++ LTR QVVE Y
Sbjct: 222 TIFSQVHEQL-KSVDAVMLGRAAYDNP-YLFATADQEFYGEKTTPLTRHQVVESMFPY-- 277
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + + + +M+ +L F +PG +KR
Sbjct: 278 --LEYWLSRGVKLNSIMRHVLQLFSGQPGTKAWKR 310
>gi|91227265|ref|ZP_01261690.1| NifR3/Smm1 family protein [Vibrio alginolyticus 12G01]
gi|91188659|gb|EAS74948.1| NifR3/Smm1 family protein [Vibrio alginolyticus 12G01]
Length = 315
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDVVDIPVTVKTRIGIDDQDSYEFLTD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 138 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKQDFSHLTIAINGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +
Sbjct: 198 KSLEEAKAHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSNAPVKKRSEIVEEMYPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A L ++ + + +L F S PG ++R + L++ + IP
Sbjct: 256 AQLA----KGAYLGHITRHMLGLFQSMPGARQWRRHISENAHKPGSGLEVLQDALAKIPK 311
Query: 243 SV 244
+
Sbjct: 312 EL 313
>gi|428201333|ref|YP_007079922.1| tRNA dihydrouridine synthase A [Pleurocapsa sp. PCC 7327]
gi|427978765|gb|AFY76365.1| tRNA dihydrouridine synthase A [Pleurocapsa sp. PCC 7327]
Length = 333
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 122/215 (56%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V A+ + ++PV+VK RIG+DD D Y + +
Sbjct: 100 NVGCPSSRVK-EGNFGACLMAQPEKVARAVEAMQKAVDLPVTVKHRIGIDDRDRYEDMAN 158
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ S + R F +H+RKA L G+SP ENRT+PPL+Y + L R+FP L +NGGI
Sbjct: 159 FV-RIVSEAGCRRFTVHARKAWLQGLSPKENRTMPPLRYGDVHRLKREFPHLFIEINGGI 217
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ EV L K VM+GRAAY NP + VD IYG + TRR+VVE Y D
Sbjct: 218 TTLAEVREQL-KSVDAVMIGRAAYDNP-FLFATVDRDIYGEKVTPPTRREVVESMLPYID 275
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + + + +L F +PG+ +KR
Sbjct: 276 YWLKKGWK----LHAISRHMLELFAGQPGSKAWKR 306
>gi|192359553|ref|YP_001981977.1| tRNA-dihydrouridine synthase A [Cellvibrio japonicus Ueda107]
gi|190685718|gb|ACE83396.1| tRNA-dihydrouridine synthase A [Cellvibrio japonicus Ueda107]
Length = 341
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 125/215 (58%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G G LM +P+ V E ++ + ++PV+VK RIG+DD D Y L
Sbjct: 101 NCGCPSDRVQ-NGMIGACLMAEPQLVAECIAAMQQAVSIPVTVKHRIGIDDMDDYEGLET 159
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +++ + FI+H+RKA L G+SP ENR IPPL+Y+ Y L +DFP L +NGGI
Sbjct: 160 FVRTIAA-TGCNTFIVHARKAWLKGLSPKENREIPPLQYDKVYQLKQDFPHLNIIINGGI 218
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ + AL + VMVGR AY NP Y L VD +YG ++R QV + + Y +
Sbjct: 219 TTLEQ-SQALLEHVDGVMVGREAYSNP-YLLAQVDQTLYGESRPVISRDQVTQAFIAYCE 276
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G H + + +L + +PG F+R
Sbjct: 277 EQLAK-GARLNH---LTRHILGLYQGQPGARQFRR 307
>gi|262163875|ref|ZP_06031615.1| tRNA-dihydrouridine synthase [Vibrio mimicus VM223]
gi|262027855|gb|EEY46520.1| tRNA-dihydrouridine synthase [Vibrio mimicus VM223]
Length = 335
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 127/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + + ++PV+VK RIG+DD DSY L
Sbjct: 98 NVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMRSVVDIPVTVKTRIGIDDQDSYEFLTQ 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RD P LT +NGG+
Sbjct: 157 FISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDLPHLTIAVNGGV 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 217 KTLEEAQQHLQY-LDGVMIGREAYQNP-YLLAEVDQQIFGLDTPVKKRSQVIHEMMPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 275 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 329
>gi|375266803|ref|YP_005024246.1| tRNA-dihydrouridine synthase A [Vibrio sp. EJY3]
gi|369842123|gb|AEX23267.1| tRNA-dihydrouridine synthase A [Vibrio sp. EJY3]
Length = 326
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 132/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + +VPV+VK RIG+DD DSY L D
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDVVDVPVTVKTRIGIDDQDSYEFLTD 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 149 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLTVAINGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +
Sbjct: 209 KSLEEAKAHLQH-LDGVMIGREAYQSP-YILASVDQELFGSSAPVKKRSEIVEEMYPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L ++ + + +L F S PG ++R + L++ + IP
Sbjct: 267 EQLA----KGAYIGHITRHMLGLFQSMPGARQWRRHISENAHKPGSGLEVLQDALAKIPK 322
Query: 243 SV 244
+
Sbjct: 323 EL 324
>gi|170728528|ref|YP_001762554.1| tRNA-dihydrouridine synthase A [Shewanella woodyi ATCC 51908]
gi|169813875|gb|ACA88459.1| TIM-barrel protein, yjbN family [Shewanella woodyi ATCC 51908]
Length = 331
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 125/215 (58%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P V E ++ + A ++PV+VK RIG+D+ DSY L +
Sbjct: 100 NVGCPSDRVQS-GRFGACLMAEPSLVAECVTAMRAVADIPVTVKTRIGIDEQDSYEFLTE 158
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V + FI+H+RKA L G+SP ENR IPPL Y+ Y L RD+PDL+ ++NGG+
Sbjct: 159 FVETVRD-AGCDTFIVHARKAWLQGLSPKENREIPPLDYDRVYQLKRDYPDLSISINGGV 217
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L K VMVGR AYQNP Y L VD + G L+R V+EK+ Y +
Sbjct: 218 KSLEECKVHLVK-LDGVMVGREAYQNP-YILAKVDQQLCGLDKPVLSRDAVLEKFIPYIE 275
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + + + + F E G+ +++R
Sbjct: 276 KHLQAGG----RLNHITRHMTGLFQGEVGSRIWRR 306
>gi|417839195|ref|ZP_12485394.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M19107]
gi|341954425|gb|EGT80906.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M19107]
Length = 329
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 131/237 (55%), Gaps = 15/237 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCDFI
Sbjct: 98 GCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCDFI 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + FIIH+RKA L+G+SP ENR IP L Y Y L RDFP LT +NGGI T
Sbjct: 157 EKVQG-KGCQEFIIHARKAWLSGLSPKENREIPSLDYARVYQLKRDFPHLTIAINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG +D A++ + +T +VV+ Y +
Sbjct: 216 IEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPSAPIVTAHEVVQSMLPYIEQQ 273
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L N H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 274 L----NQGIHLNHIVRHMLGAFQNCKGARQWRRYLSENAFKQGAGVEVVETALSFVE 326
>gi|145633883|ref|ZP_01789604.1| hypothetical protein CGSHi3655_08484 [Haemophilus influenzae 3655]
gi|145635660|ref|ZP_01791356.1| hypothetical protein CGSHiAA_01434 [Haemophilus influenzae PittAA]
gi|144985255|gb|EDJ92098.1| hypothetical protein CGSHi3655_08484 [Haemophilus influenzae 3655]
gi|145267055|gb|EDK07063.1| hypothetical protein CGSHiAA_01434 [Haemophilus influenzae PittAA]
Length = 329
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 132/238 (55%), Gaps = 15/238 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCDFI
Sbjct: 98 GCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCDFI 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI T
Sbjct: 157 EKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYTRVYQLKRDFPHLTIAINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG +D A++ + +T + VE Y +
Sbjct: 216 IEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVESMLPYIEQQ 273
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
L + H+ +++ +L F + G ++R K A + +T SF+E+
Sbjct: 274 L----SQGIHLNHIVRHMLGAFQNCKGARQWRRYLSENAFKQGAGVEVVETALSFVEK 327
>gi|269964431|ref|ZP_06178672.1| NifR3/Smm1 family protein [Vibrio alginolyticus 40B]
gi|269830769|gb|EEZ84987.1| NifR3/Smm1 family protein [Vibrio alginolyticus 40B]
Length = 354
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 118 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDVVDIPVTVKTRIGIDDQDSYEFLTD 176
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 177 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKQDFSHLTIAINGGV 236
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +
Sbjct: 237 KSLEEAKAHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSNAPVKKRSEIVEEMYPYIE 294
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A L ++ + + +L F S PG ++R + L++ + IP
Sbjct: 295 AQLA----KGAYLGHITRHMLGLFQSMPGARQWRRHISENAHKPGSGLEVLQDALAKIPK 350
Query: 243 SV 244
+
Sbjct: 351 EL 352
>gi|238913008|ref|ZP_04656845.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 332
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FINTVSGQDECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|90416108|ref|ZP_01224041.1| NifR3/Smm1 family protein [gamma proteobacterium HTCC2207]
gi|90332482|gb|EAS47679.1| NifR3/Smm1 family protein [gamma proteobacterium HTCC2207]
Length = 322
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 124/217 (57%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G FG +M D + +S + ++P++VK RIGVD++DSY L D
Sbjct: 90 NCGCPSDRVQ-NGMFGAVMMKDAEITANCVSAMREAVDLPITVKHRIGVDEYDSYEFLRD 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V+ S F++H+RKA L G+SP +NR IP L Y+ Y L +DFP L +NGG+
Sbjct: 149 FVGRVTE-SGCEVFLVHARKAWLKGLSPKQNREIPELNYDRVYRLKKDFPQLEIIINGGV 207
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VMVGR Y NP Y L VD IYGA TRRQ+ E++ Y D
Sbjct: 208 TTLEQSKEHLQH-LDGVMVGREVYSNP-YLLASVDQDIYGASHGVKTRRQIAEEFLQYAD 265
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GT N + + +L FH PG F+R
Sbjct: 266 NELSKGTKLNA------MTRHILGLFHGMPGARQFRR 296
>gi|416530644|ref|ZP_11745107.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416534891|ref|ZP_11747379.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416550057|ref|ZP_11755735.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|417471394|ref|ZP_12167386.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|418790328|ref|ZP_13346105.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418794887|ref|ZP_13350602.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418796080|ref|ZP_13351772.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|353622983|gb|EHC72385.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|363550270|gb|EHL34598.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363566997|gb|EHL51010.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363569120|gb|EHL53084.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|392758711|gb|EJA15577.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392760313|gb|EJA17151.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392770949|gb|EJA27670.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
Length = 332
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVTVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|444375899|ref|ZP_21175150.1| tRNA dihydrouridine synthase A [Enterovibrio sp. AK16]
gi|443679987|gb|ELT86636.1| tRNA dihydrouridine synthase A [Enterovibrio sp. AK16]
Length = 346
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 131/241 (54%), Gaps = 11/241 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + +S + ++PV+VK RIG+DD DSY L D
Sbjct: 110 NVGCPSDRVQ-NGRFGACLMGEAELVAQCVSAMKEVVDIPVTVKTRIGIDDQDSYEFLVD 168
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS +F IH+RKA L+G+SP ENR IPPL Y Y L +DFP LT +NGGI
Sbjct: 169 FVRTVSEKGSCDNFTIHARKAWLSGLSPKENREIPPLDYPRVYQLKKDFPHLTMAINGGI 228
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L K VM+GR AYQ+P Y L VD ++G + + R V+ Y +
Sbjct: 229 KSLEEAEEHL-KHLDGVMIGREAYQSP-YMLAEVDNRLFGGDAPIIKRSDAVKAMFPYIE 286
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
A L GTY N+ + + +L F + PG ++R + LE + I
Sbjct: 287 AELSKGTYLNH------ISRHMLGLFQNMPGARQWRRYISENAHKPGSGVEVLEAALAKI 340
Query: 241 P 241
P
Sbjct: 341 P 341
>gi|56416043|ref|YP_153118.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161617371|ref|YP_001591336.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167552533|ref|ZP_02346286.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|197364970|ref|YP_002144607.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|416423360|ref|ZP_11690749.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416433040|ref|ZP_11696566.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416442269|ref|ZP_11702356.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416447349|ref|ZP_11705794.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416455473|ref|ZP_11711098.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416457699|ref|ZP_11712301.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416482962|ref|ZP_11723950.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416494314|ref|ZP_11728126.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416499548|ref|ZP_11730859.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416506579|ref|ZP_11734797.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416543311|ref|ZP_11752093.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416559764|ref|ZP_11760856.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416568949|ref|ZP_11765137.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416580782|ref|ZP_11772173.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416587601|ref|ZP_11776137.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416592012|ref|ZP_11778833.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416599971|ref|ZP_11783918.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416607446|ref|ZP_11788517.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416615753|ref|ZP_11793665.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416618197|ref|ZP_11794478.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416633858|ref|ZP_11802199.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416644324|ref|ZP_11806707.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416646520|ref|ZP_11807786.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416656140|ref|ZP_11813116.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416669559|ref|ZP_11819525.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416676793|ref|ZP_11822022.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416693218|ref|ZP_11826628.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416708650|ref|ZP_11833512.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416709933|ref|ZP_11834038.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416720356|ref|ZP_11842070.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416726058|ref|ZP_11846119.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416731500|ref|ZP_11849415.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416735649|ref|ZP_11851533.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416745080|ref|ZP_11857038.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416759652|ref|ZP_11864479.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416763974|ref|ZP_11867648.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416770480|ref|ZP_11871832.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|417377338|ref|ZP_12146282.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|418482816|ref|ZP_13051829.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418486738|ref|ZP_13055684.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418496396|ref|ZP_13062830.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418501035|ref|ZP_13067426.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418503593|ref|ZP_13069952.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418508252|ref|ZP_13074555.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418523688|ref|ZP_13089676.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|56130300|gb|AAV79806.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161366735|gb|ABX70503.1| hypothetical protein SPAB_05226 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197096447|emb|CAR62053.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|205322837|gb|EDZ10676.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|322615399|gb|EFY12319.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618459|gb|EFY15348.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322622129|gb|EFY18979.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322627200|gb|EFY23992.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631160|gb|EFY27924.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322637622|gb|EFY34323.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643604|gb|EFY40159.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322648339|gb|EFY44798.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322654648|gb|EFY50968.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659608|gb|EFY55851.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322662183|gb|EFY58399.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322666071|gb|EFY62249.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322672491|gb|EFY68602.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675920|gb|EFY71991.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322680405|gb|EFY76443.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684701|gb|EFY80705.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323195965|gb|EFZ81131.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323197105|gb|EFZ82246.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201777|gb|EFZ86841.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323213302|gb|EFZ98104.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323215672|gb|EGA00416.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323222095|gb|EGA06481.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226506|gb|EGA10712.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323229131|gb|EGA13260.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323236259|gb|EGA20335.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237621|gb|EGA21682.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323241713|gb|EGA25742.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323248140|gb|EGA32077.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254530|gb|EGA38341.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323258410|gb|EGA42087.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323259690|gb|EGA43324.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323265963|gb|EGA49459.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323270405|gb|EGA53853.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|353590260|gb|EHC48829.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|363555177|gb|EHL39409.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363575485|gb|EHL59336.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|363576956|gb|EHL60782.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|366056826|gb|EHN21131.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366062698|gb|EHN26927.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366067567|gb|EHN31717.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366071921|gb|EHN36013.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366072663|gb|EHN36751.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366079507|gb|EHN43489.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366831210|gb|EHN58076.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372208000|gb|EHP21496.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
Length = 332
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|291296460|ref|YP_003507858.1| YjbN family TIM-barrel protein [Meiothermus ruber DSM 1279]
gi|290471419|gb|ADD28838.1| TIM-barrel protein, yjbN family [Meiothermus ruber DSM 1279]
Length = 339
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 128/215 (59%), Gaps = 9/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G G FG LML+P V E+M+ + +PV+ K R+GVD+ + Y L
Sbjct: 95 NLGCPSERVQG-GGFGACLMLEPDLVAESMAAMRQAVKIPVTAKHRLGVDEVEDYRYLAR 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K++ + FI+H+RKA L G+SPAENRTIPPL+Y++ Y L +DFP LT LNGG+
Sbjct: 154 FVEKLAGVG-VGVFIVHARKAYLKGLSPAENRTIPPLRYDWVYRLKQDFPHLTIVLNGGV 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++EV A L K VM+GRA Y++P + L D ++G + TR +V + Y +
Sbjct: 213 RTLEEVQAHLAK-VDGVMLGRAVYEDP-FVLEPADRRLFG-EAHATTRLEVAQAMLRYAE 269
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + + + +L+ F +P L++R
Sbjct: 270 AQL----EQGTPLWAMARHMLNLFKGQPRGRLWRR 300
>gi|420249934|ref|ZP_14753167.1| tRNA dihydrouridine synthase A [Burkholderia sp. BT03]
gi|398063231|gb|EJL54981.1| tRNA dihydrouridine synthase A [Burkholderia sp. BT03]
Length = 333
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 113/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVDD D Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMKEPQLVADCVKAMRDVVSVPVTVKHRIGVDDVDDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 155 FVGTIAE-AGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQLEIIINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV A L+ VM+GR AY NP Y L VD YG+ + TR + K Y
Sbjct: 214 KTLDEVEAHLQH-VDGVMLGREAYHNP-YVLADVDARFYGSTDAAPTREEAEAKLIEYCR 271
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 272 AELARGTY 279
>gi|204927346|ref|ZP_03218548.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|452122023|ref|YP_007472271.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|204324011|gb|EDZ09206.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|451911027|gb|AGF82833.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 332
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVTVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|416519302|ref|ZP_11739838.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363558367|gb|EHL42559.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
Length = 316
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 128/241 (53%), Gaps = 7/241 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 82 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 140
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 141 FINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 200
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 201 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIE 258
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 259 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 314
Query: 243 S 243
Sbjct: 315 K 315
>gi|168263436|ref|ZP_02685409.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|417369857|ref|ZP_12140887.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|205348025|gb|EDZ34656.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|353583306|gb|EHC43699.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
Length = 332
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FIDTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILASVDREIFGADTTDTDPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|330445027|ref|ZP_08308681.1| tRNA-dihydrouridine synthase A [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328493145|dbj|GAA03178.1| tRNA-dihydrouridine synthase A [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 346
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 110 NVGCPSDRVQ-NGMFGACLMGEAELVAQCVTAMRDVVDIPVTVKTRIGIDDQDSYEFLKD 168
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI+ VS +F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGGI
Sbjct: 169 FIHVVSEKGGCDNFTIHARKAWLSGLSPKENREIPPLDYPRVYQLKQDFAHLTMAINGGI 228
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T +E+ L K VMVGR AYQ+P Y + VD ++G+ + RR+VVE Y +
Sbjct: 229 KTFEEMEEHL-KHMDGVMVGREAYQSP-YLMSEVDQRLFGSDRPVMKRREVVEAMYPYIE 286
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L N ++ + + +L F + PG ++R
Sbjct: 287 KQLA----NGSYLGHITRHMLGLFQNMPGARQWRR 317
>gi|45656544|ref|YP_000630.1| tRNA-dihydrouridine synthase A [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|294828345|ref|NP_713734.2| tRNA-dihydrouridine synthase A [Leptospira interrogans serovar Lai
str. 56601]
gi|386075284|ref|YP_005989604.1| tRNA-dihydrouridine synthase A [Leptospira interrogans serovar Lai
str. IPAV]
gi|417763323|ref|ZP_12411302.1| tRNA dihydrouridine synthase A [Leptospira interrogans str.
2002000624]
gi|45599779|gb|AAS69267.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|293386197|gb|AAN50752.2| tRNA-dihydrouridine synthase A [Leptospira interrogans serovar Lai
str. 56601]
gi|353459076|gb|AER03621.1| tRNA-dihydrouridine synthase A [Leptospira interrogans serovar Lai
str. IPAV]
gi|409940800|gb|EKN86438.1| tRNA dihydrouridine synthase A [Leptospira interrogans str.
2002000624]
Length = 347
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 134/244 (54%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + ++P++VKCRIG+ +++ LC
Sbjct: 98 NVGCPSDRVR-EGNFGACLMETPEKVAELTFAMDTSVSIPITVKCRIGIPGKETFEDLCK 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V R FI+H+R A+L G++PA+NR +PPL Y Y +L ++FPDL +NGGI
Sbjct: 157 FIECVRQTGVQR-FIVHARIAILGGLTPAQNRQVPPLHYTYVESLKKEFPDLLIEINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L K VM+GRAAY+ P Y VD+ +G L+RR+++ + + Y +
Sbjct: 216 RTITSIRERLEKN-DGVMIGRAAYETP-YLFSEVDSLFFGENLPPLSRREILLRMKDYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH E G F++ + + K L + I I +
Sbjct: 274 EVILKEKNGKPH--HALRHMLGLFHGEKGARSFRKILTEGMYSGYS-KDLLSKAIQEISN 330
Query: 243 SVLD 246
LD
Sbjct: 331 DSLD 334
>gi|422016920|ref|ZP_16363496.1| tRNA-dihydrouridine synthase A [Providencia burhodogranariea DSM
19968]
gi|414091350|gb|EKT53036.1| tRNA-dihydrouridine synthase A [Providencia burhodogranariea DSM
19968]
Length = 342
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 122/215 (56%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM D + V + + + ++PV+VK RIG+D+ DSY LCD
Sbjct: 108 NVGCPSDRVQ-NGRFGACLMGDAQLVADCIKAMQDVVSIPVTVKTRIGIDEQDSYEFLCD 166
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KVS+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+
Sbjct: 167 FIDKVSTQGGCEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMAINGGV 226
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E LR VMVGR AYQNP L VD ++ + SS + V + Y +
Sbjct: 227 KTLEEAKEHLRY-LDGVMVGREAYQNP-SILAEVDNQLFDSQSSVVNTFDAVRQMFPYIE 284
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + ++ + + +L F PG ++R
Sbjct: 285 KEL----SQGAYLGHITRHMLGIFQGIPGARQWRR 315
>gi|417320900|ref|ZP_12107441.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus 10329]
gi|328472365|gb|EGF43235.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus 10329]
Length = 326
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 132/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E ++ + +VPV+VK RIG+DD DSY L D
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMAEPQLVAECVAAMKEVVDVPVTVKTRIGIDDQDSYEFLTD 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 149 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKQDFSHLTIAINGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +
Sbjct: 209 KSLEEAKVHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSNAPVKKRSEIVEEMYPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A L ++ + + +L F + PG ++R + L++ + IP
Sbjct: 267 AQLA----KGAYLGHITRHMLGLFQNMPGARQWRRHISENAHKPGSGLEVLQDALAKIPK 322
Query: 243 SV 244
+
Sbjct: 323 EL 324
>gi|421115380|ref|ZP_15575788.1| dihydrouridine synthase [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|410013158|gb|EKO71241.1| dihydrouridine synthase [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|456984687|gb|EMG20683.1| dihydrouridine synthase [Leptospira interrogans serovar Copenhageni
str. LT2050]
Length = 328
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 134/244 (54%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + ++P++VKCRIG+ +++ LC
Sbjct: 79 NVGCPSDRVR-EGNFGACLMETPEKVAELTFAMDTSVSIPITVKCRIGIPGKETFEDLCK 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V R FI+H+R A+L G++PA+NR +PPL Y Y +L ++FPDL +NGGI
Sbjct: 138 FIECVRQTGVQR-FIVHARIAILGGLTPAQNRQVPPLHYTYVESLKKEFPDLLIEINGGI 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L K VM+GRAAY+ P Y VD+ +G L+RR+++ + + Y +
Sbjct: 197 RTITSIRERLEKN-DGVMIGRAAYETP-YLFSEVDSLFFGENLPPLSRREILLRMKDYIE 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH E G F++ + + K L + I I +
Sbjct: 255 EVILKEKNGKPH--HALRHMLGLFHGEKGARSFRKILTEGMYSGYS-KDLLSKAIQEISN 311
Query: 243 SVLD 246
LD
Sbjct: 312 DSLD 315
>gi|417766628|ref|ZP_12414579.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|417776049|ref|ZP_12423893.1| tRNA dihydrouridine synthase A [Leptospira interrogans str.
2002000621]
gi|417786517|ref|ZP_12434207.1| tRNA dihydrouridine synthase A [Leptospira interrogans str. C10069]
gi|418666669|ref|ZP_13228088.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418672075|ref|ZP_13233417.1| tRNA dihydrouridine synthase A [Leptospira interrogans str.
2002000623]
gi|418688681|ref|ZP_13249825.1| tRNA dihydrouridine synthase A [Leptospira interrogans str.
FPW2026]
gi|418697820|ref|ZP_13258806.1| tRNA dihydrouridine synthase A [Leptospira kirschneri str. H1]
gi|418700425|ref|ZP_13261367.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Bataviae str. L1111]
gi|421086555|ref|ZP_15547404.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. HAI1594]
gi|421101115|ref|ZP_15561729.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421121032|ref|ZP_15581333.1| tRNA dihydrouridine synthase A [Leptospira interrogans str. Brem
329]
gi|400351023|gb|EJP03271.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400362181|gb|EJP18125.1| tRNA dihydrouridine synthase A [Leptospira interrogans str.
FPW2026]
gi|409950139|gb|EKO04668.1| tRNA dihydrouridine synthase A [Leptospira interrogans str. C10069]
gi|409954429|gb|EKO13384.1| tRNA dihydrouridine synthase A [Leptospira kirschneri str. H1]
gi|410346021|gb|EKO97053.1| tRNA dihydrouridine synthase A [Leptospira interrogans str. Brem
329]
gi|410368911|gb|EKP24285.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410431054|gb|EKP75416.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. HAI1594]
gi|410574253|gb|EKQ37291.1| tRNA dihydrouridine synthase A [Leptospira interrogans str.
2002000621]
gi|410580679|gb|EKQ48498.1| tRNA dihydrouridine synthase A [Leptospira interrogans str.
2002000623]
gi|410757450|gb|EKR19061.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410760326|gb|EKR26522.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Bataviae str. L1111]
gi|455789882|gb|EMF41785.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar Lora
str. TE 1992]
gi|456822808|gb|EMF71278.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 329
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 134/244 (54%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + ++P++VKCRIG+ +++ LC
Sbjct: 80 NVGCPSDRVR-EGNFGACLMETPEKVAELTFAMDTSVSIPITVKCRIGIPGKETFEDLCK 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V R FI+H+R A+L G++PA+NR +PPL Y Y +L ++FPDL +NGGI
Sbjct: 139 FIECVRQTGVQR-FIVHARIAILGGLTPAQNRQVPPLHYTYVESLKKEFPDLLIEINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L K VM+GRAAY+ P Y VD+ +G L+RR+++ + + Y +
Sbjct: 198 RTITSIRERLEKN-DGVMIGRAAYETP-YLFSEVDSLFFGENLPPLSRREILLRMKDYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH E G F++ + + K L + I I +
Sbjct: 256 EVILKEKNGKPH--HALRHMLGLFHGEKGARSFRKILTEGMYSGYS-KDLLSKAIQEISN 312
Query: 243 SVLD 246
LD
Sbjct: 313 DSLD 316
>gi|384263387|ref|YP_005418576.1| Dihydrouridine synthase TIM-barrel protein yjbN [Rhodospirillum
photometricum DSM 122]
gi|378404490|emb|CCG09606.1| Dihydrouridine synthase TIM-barrel protein yjbN [Rhodospirillum
photometricum DSM 122]
Length = 356
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 137/241 (56%), Gaps = 17/241 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-ANTNVPVSVKCRIGVDDHDSYNQLC 61
+ GCPS +V+ G FG LM +P V E +S +A A +PV++K RIG+DD D+Y+ L
Sbjct: 107 NVGCPSDRVS-KGRFGACLMAEPALVAECLSALAEAVPGLPVTIKHRIGIDDLDTYDHLT 165
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
F+ V S T FI+H+RKA L+G+SP ENRT+PPL+++ + L DFPDLT LNGG
Sbjct: 166 RFVDHVRR-SGTTTFIVHARKAWLHGLSPKENRTVPPLRHDVVHRLKADFPDLTIVLNGG 224
Query: 122 INTVDEVNAALRKG--------AHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQV 173
I ++D AAL +G VM+GRAAY+ P Y L D ++GA + R +
Sbjct: 225 ITSLDAALAALTEGQTPEGLPPVDGVMIGRAAYETP-YILAEADQRVFGAETPVPDRAAI 283
Query: 174 VEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSF 232
V YG+A++ P R + + +L FH PG ++R ++ AF+ +
Sbjct: 284 VRALIPYGEALV---ARGEPITR-LTRHVLGLFHGVPGARGWRRVLSEEAFRPGTDARVL 339
Query: 233 L 233
L
Sbjct: 340 L 340
>gi|378696832|ref|YP_005178790.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 10810]
gi|301169351|emb|CBW28951.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 10810]
Length = 285
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 132/239 (55%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 54 NVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCD 112
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 113 FIEKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQLKRDFPHLTIAINGGI 171
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LG +D A++ + +T + V+ Y +
Sbjct: 172 KTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVQSMLPYIE 229
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 230 QQL----SQGVHLNHIVRHMLGAFQNCKGARQWRRYLSENAFKQGAGVEVVETALSFVE 284
>gi|421105566|ref|ZP_15566147.1| tRNA dihydrouridine synthase A [Leptospira kirschneri str. H2]
gi|410009470|gb|EKO63125.1| tRNA dihydrouridine synthase A [Leptospira kirschneri str. H2]
Length = 347
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 134/244 (54%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + ++P++VKCRIG+ +++ LC
Sbjct: 98 NVGCPSDRVR-EGNFGACLMETPEKVAELTFAMDTSVSIPITVKCRIGIPGKETFEDLCK 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V R FI+H+R A+L G++PA+NR +PPL Y Y +L ++FPDL +NGGI
Sbjct: 157 FIECVRQTGVQR-FIVHARIAILGGLTPAQNRQVPPLHYTYVESLKKEFPDLLIEINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L K VM+GRAAY+ P Y VD+ +G L+RR+++ + + Y +
Sbjct: 216 RTITSIRERLEKN-DGVMIGRAAYETP-YLFSEVDSLFFGENLPPLSRREILLRMKDYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH E G F++ + + K L + I I +
Sbjct: 274 EVILKEKNGKPH--HALRHMLGLFHGEKGARSFRKILTEGMYSGYS-KDLLSKAIQEISN 330
Query: 243 SVLD 246
LD
Sbjct: 331 DSLD 334
>gi|416464894|ref|ZP_11716492.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322642507|gb|EFY39107.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
Length = 310
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 128/241 (53%), Gaps = 7/241 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 76 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 134
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 135 FINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 194
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 195 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIE 252
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 253 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 308
Query: 243 S 243
Sbjct: 309 K 309
>gi|197247584|ref|YP_002149157.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|417515016|ref|ZP_12178665.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|440763290|ref|ZP_20942332.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440766472|ref|ZP_20945462.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440771036|ref|ZP_20949961.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|197211287|gb|ACH48684.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|353632051|gb|EHC79212.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|436420321|gb|ELP18186.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|436422620|gb|ELP20452.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|436422882|gb|ELP20705.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
Length = 332
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|417387391|ref|ZP_12151838.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
gi|353600498|gb|EHC56371.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
Length = 332
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|336125336|ref|YP_004567384.1| NIFR3-like protein [Vibrio anguillarum 775]
gi|335343059|gb|AEH34342.1| NIFR3-like protein [Vibrio anguillarum 775]
Length = 326
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + + ++PV+VK RIG+DD DSY L D
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKSVVDIPVTVKTRIGIDDMDSYEFLTD 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS F IH+RKA L+G+SP ENR IPPL Y Y L +DFP L +NGG+
Sbjct: 149 FISLVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYSRAYQLKKDFPHLVIAVNGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ EV+ L+ VM+GR AYQ+P Y L VD I+G + R Q++E+ Y +
Sbjct: 209 KTLAEVSEHLQH-LDGVMIGREAYQSP-YLLAEVDQTIFGMDTPIKKRSQIIEEMFPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G+ H + + +L F + PG ++R
Sbjct: 267 RQLAQ-GSYLGH---ITRHMLGMFQNMPGARQWRR 297
>gi|229845624|ref|ZP_04465749.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 6P18H1]
gi|229811424|gb|EEP47128.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 6P18H1]
Length = 327
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 132/239 (55%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 155 FIEKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYIRVYQLKRDFPHLTIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LG +D A++ + +T + VE Y +
Sbjct: 214 KTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPVVTAHEAVESMLPYIE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 272 QQL----SQGIHLNHIVRHILGAFQNCKGARQWRRYLSENAFKQGAGIEVVETALSFVE 326
>gi|365539321|ref|ZP_09364496.1| tRNA-dihydrouridine synthase A [Vibrio ordalii ATCC 33509]
Length = 326
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + + ++PV+VK RIG+DD DSY L D
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKSVVDIPVTVKTRIGIDDMDSYEFLTD 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS F IH+RKA L+G+SP ENR IPPL Y Y L +DFP L +NGG+
Sbjct: 149 FISLVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYSRAYQLKKDFPHLVIAVNGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ EV+ L+ VM+GR AYQ+P Y L VD I+G + R Q++E+ Y +
Sbjct: 209 KTLAEVSEHLQH-LDGVMIGREAYQSP-YLLAEVDQTIFGMDTPIKKRSQIIEEMFPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G+ H + + +L F + PG ++R
Sbjct: 267 RQLAQ-GSYLGH---ITRHMLGMFQNMPGARQWRR 297
>gi|418702736|ref|ZP_13263632.1| dihydrouridine synthase [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|418712340|ref|ZP_13273081.1| dihydrouridine synthase [Leptospira interrogans str. UI 08452]
gi|418730292|ref|ZP_13288793.1| dihydrouridine synthase [Leptospira interrogans str. UI 12758]
gi|410767602|gb|EKR38273.1| dihydrouridine synthase [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|410774969|gb|EKR54972.1| dihydrouridine synthase [Leptospira interrogans str. UI 12758]
gi|410791097|gb|EKR84777.1| dihydrouridine synthase [Leptospira interrogans str. UI 08452]
Length = 329
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 134/244 (54%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + ++P++VKCRIG+ +++ LC
Sbjct: 80 NVGCPSDRVR-EGNFGACLMETPEKVAELTFAMDTSVSIPITVKCRIGIPGKETFEDLCK 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V R FI+H+R A+L G++PA+NR +PPL Y Y +L ++FPDL +NGGI
Sbjct: 139 FIECVRQTGVQR-FIVHARIAILGGLTPAQNRQVPPLHYTYVESLKKEFPDLLIEINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L K VM+GRAAY+ P Y VD+ +G L+RR+++ + + Y +
Sbjct: 198 RTITSIRERLEKN-DGVMIGRAAYETP-YLFSEVDSLFFGENLPPLSRREILLRMKDYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH E G F++ + + K L + I I +
Sbjct: 256 EVILKEKNGKPH--HALRHMLGLFHGEKGARSFRKILTEGMYSGYS-KDLLSKAIQEISN 312
Query: 243 SVLD 246
LD
Sbjct: 313 DSLD 316
>gi|197263333|ref|ZP_03163407.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197241588|gb|EDY24208.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
Length = 332
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVTVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|437835925|ref|ZP_20845495.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435299608|gb|ELO75734.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
Length = 332
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 127/238 (53%), Gaps = 7/238 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCDFI
Sbjct: 100 GCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFI 158
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI +
Sbjct: 159 NTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKS 218
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 219 LEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIERE 276
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 277 L----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|62182692|ref|YP_219109.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|168821313|ref|ZP_02833313.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|224586008|ref|YP_002639807.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|375117045|ref|ZP_09762215.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|409247917|ref|YP_006888609.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|62130325|gb|AAX68028.1| putative TIM-barrel enzymes, possibly dehydrogenases, nifR3 family
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|205342153|gb|EDZ28917.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|224470536|gb|ACN48366.1| hypothetical protein SPC_4304 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|320088651|emb|CBY98409.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322717191|gb|EFZ08762.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
Length = 332
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 127/238 (53%), Gaps = 7/238 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCDFI
Sbjct: 100 GCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFI 158
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI +
Sbjct: 159 NTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKS 218
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 219 LEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIERE 276
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 277 L----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|417769286|ref|ZP_12417203.1| dihydrouridine synthase [Leptospira interrogans serovar Pomona str.
Pomona]
gi|418681964|ref|ZP_13243185.1| dihydrouridine synthase [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400326331|gb|EJO78599.1| dihydrouridine synthase [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|409948732|gb|EKN98719.1| dihydrouridine synthase [Leptospira interrogans serovar Pomona str.
Pomona]
gi|455667507|gb|EMF32817.1| dihydrouridine synthase [Leptospira interrogans serovar Pomona str.
Fox 32256]
Length = 329
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 134/244 (54%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + ++P++VKCRIG+ +++ LC
Sbjct: 80 NVGCPSDRVR-EGNFGACLMETPEKVAELTFAMDTSVSIPITVKCRIGIPGKETFEDLCK 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V R FI+H+R A+L G++PA+NR +PPL Y Y +L ++FPDL +NGGI
Sbjct: 139 FIECVRQTGVQR-FIVHARIAILGGLTPAQNRQVPPLHYTYVESLKKEFPDLLIEINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L K VM+GRAAY+ P Y VD+ +G L+RR+++ + + Y +
Sbjct: 198 RTITSIRERLEKN-DGVMIGRAAYETP-YLFSEVDSLFFGENLPPLSRREILLRMKDYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH E G F++ + + K L + I I +
Sbjct: 256 EVILKEKNGKPH--HALRHMLGLFHGEKGARSFRKILTEGMYSGYS-KDLLSKAIQEISN 312
Query: 243 SVLD 246
LD
Sbjct: 313 DSLD 316
>gi|168236934|ref|ZP_02661992.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194736682|ref|YP_002117177.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|194712184|gb|ACF91405.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197289961|gb|EDY29320.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
Length = 345
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 230 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVTVVRAMYPYIE 287
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 288 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 343
>gi|119476488|ref|ZP_01616839.1| Dihydrouridine synthase TIM-barrel protein yjbN [marine gamma
proteobacterium HTCC2143]
gi|119450352|gb|EAW31587.1| Dihydrouridine synthase TIM-barrel protein yjbN [marine gamma
proteobacterium HTCC2143]
Length = 341
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 137/240 (57%), Gaps = 15/240 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G FG LM P+ V + +S + +++P++VK RIG+D+ +SY+++ +
Sbjct: 92 NCGCPSDRVQ-NGMFGACLMAHPQRVADCISAMQDASSLPITVKHRIGIDEMESYDEMLE 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+RKA L G+SP +NR IPPL Y+ + L +DFP L +NGGI
Sbjct: 151 FVKPIADTGCST-FIVHARKAWLQGLSPKQNRDIPPLHYDMVHQLKQDFPSLNVIINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ + L+ VM+GRAAYQNP Y L VD+ IY AP+ TR QV+ Y Y +
Sbjct: 210 TSIEHCVSHLQL-VDGVMLGRAAYQNP-YLLAEVDSLIYNAPTVIKTRDQVLLDYIPYIE 267
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
L N + + + +L F PG LF+R ++DA + + E
Sbjct: 268 EQL----QNNVALNHMTRHILGLFQGIPGAKLFRRHISEQAHRSDAGINVVYQARELMLE 323
>gi|315497697|ref|YP_004086501.1| tim-barrel protein, yjbn family [Asticcacaulis excentricus CB 48]
gi|315415709|gb|ADU12350.1| TIM-barrel protein, yjbN family [Asticcacaulis excentricus CB 48]
Length = 343
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 127/245 (51%), Gaps = 9/245 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + M + T +PV+VKCRIGVDD D L
Sbjct: 93 NCGCPSDRVQS-GSFGACLMREPQLVADCMQAMGEATRLPVTVKCRIGVDDQDEETALFA 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+ + + R FI+H+RKA L G+SP ENR IPPL YE YAL R PDLT ++NGGI
Sbjct: 152 LV-EACRQAGVRTFIVHARKAWLKGLSPKENRDIPPLNYELVYALKRAHPDLTISINGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L K VM+GRAAY P LG VD I+ + + + +E Y Y
Sbjct: 211 GTLQEAETHL-KHVDGVMLGRAAYHEP-ALLGQVDRRIFSGEAD-VGPFEALEAYSPYVQ 267
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A L H+ + + +L H PG F+R L++ I A+ D
Sbjct: 268 AQLAAG----VHLPAITRHMLGLMHGLPGARAFRRILTVGSIQPGAGIEVLDQAIEAVRD 323
Query: 243 SVLDS 247
++ S
Sbjct: 324 AMAAS 328
>gi|383191973|ref|YP_005202101.1| tRNA dihydrouridine synthase A [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371590231|gb|AEX53961.1| tRNA dihydrouridine synthase A [Rahnella aquatilis CIP 78.65 = ATCC
33071]
Length = 342
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 121/215 (56%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 102 NVGCPSDRVQ-NGMFGACLMGQASLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 160
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 161 FIRQVSENGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMAINGGI 220
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VMVGR AYQNP L +VD ++G+ + T V+ Y +
Sbjct: 221 KTLEEAKTHLQY-MDGVMVGREAYQNPGILL-NVDRELFGSDAPLKTGPDVIRALYPYIE 278
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A LG ++ + + +L F PG F+R
Sbjct: 279 AELG----KGTYLGHITRHILGLFQGVPGARQFRR 309
>gi|16272577|ref|NP_438794.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae Rd KW20]
gi|260581551|ref|ZP_05849356.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae RdAW]
gi|1176344|sp|P44794.1|DUSA_HAEIN RecName: Full=tRNA-dihydrouridine synthase A
gi|1573630|gb|AAC22293.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260091796|gb|EEW75754.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae RdAW]
Length = 327
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 132/239 (55%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 155 FIEKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYIRVYQLKRDFPHLTIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LG +D A++ + +T + VE Y +
Sbjct: 214 KTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVESMLPYIE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 272 QQL----SQGIHLNHIVRHILGAFQNCKGARQWRRYLSENAFKQGAGIEVVETALSFVE 326
>gi|334123884|ref|ZP_08497898.1| tRNA dihydrouridine synthase A [Enterobacter hormaechei ATCC 49162]
gi|333389862|gb|EGK61018.1| tRNA dihydrouridine synthase A [Enterobacter hormaechei ATCC 49162]
Length = 331
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + +VPV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAHLVADCIKAMRDVVSVPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE A L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 216 TSLDEAKAHLEH-MDGVMVGREAYQNPG-ILATVDREIFGVEGADTDPVAVVRAMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 274 REL----SNGTYLGHITRHMLGLFQGIPGARQWRR 304
>gi|262172527|ref|ZP_06040205.1| tRNA-dihydrouridine synthase [Vibrio mimicus MB-451]
gi|261893603|gb|EEY39589.1| tRNA-dihydrouridine synthase [Vibrio mimicus MB-451]
Length = 316
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 127/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + + ++PV+VK RIG+D DSY L
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMRSVVDIPVTVKTRIGIDAQDSYEFLTQ 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 138 FISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 198 KTLEEAQQHLQY-LDGVMIGREAYQNP-YLLAEVDQQIFGLDTPVKKRSQVIHEMMPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 256 REL----SQGTHLGHMTRHILGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALTKIP 310
>gi|331675581|ref|ZP_08376328.1| tRNA-dihydrouridine synthase A [Escherichia coli TA280]
gi|331067189|gb|EGI38597.1| tRNA-dihydrouridine synthase A [Escherichia coli TA280]
Length = 345
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 123/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDVDPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|168466925|ref|ZP_02700773.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|418762767|ref|ZP_13318893.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418767734|ref|ZP_13323798.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418771003|ref|ZP_13327020.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418777295|ref|ZP_13333226.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418782425|ref|ZP_13338289.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418785444|ref|ZP_13341277.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418804306|ref|ZP_13359913.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|419786385|ref|ZP_14312113.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419795235|ref|ZP_14320838.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|195630652|gb|EDX49264.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|392613183|gb|EIW95644.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392621731|gb|EIX04080.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392735026|gb|EIZ92207.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392735384|gb|EIZ92557.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392735496|gb|EIZ92668.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392744112|gb|EJA01169.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392744288|gb|EJA01344.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392752541|gb|EJA09482.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392770825|gb|EJA27547.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
Length = 332
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FIDTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVTVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|16767493|ref|NP_463108.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167991432|ref|ZP_02572531.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|374981747|ref|ZP_09723070.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|378447562|ref|YP_005235194.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378453175|ref|YP_005240535.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378702086|ref|YP_005184044.1| hypothetical protein SL1344_4179 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378986919|ref|YP_005250075.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378991512|ref|YP_005254676.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379703483|ref|YP_005245211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|383498823|ref|YP_005399512.1| hypothetical protein UMN798_4602 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|422028484|ref|ZP_16374783.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422033534|ref|ZP_16379602.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427557379|ref|ZP_18930106.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427575211|ref|ZP_18934696.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427597005|ref|ZP_18939614.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427621382|ref|ZP_18944496.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427645326|ref|ZP_18949384.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427658495|ref|ZP_18954104.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427663766|ref|ZP_18959011.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427681699|ref|ZP_18963902.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427801900|ref|ZP_18969388.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|38604955|sp|Q8ZKH4.1|DUSA_SALTY RecName: Full=tRNA-dihydrouridine synthase A
gi|16422801|gb|AAL23067.1| putative TIM-barrel enzyme [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|205330107|gb|EDZ16871.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|261249341|emb|CBG27204.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267996554|gb|ACY91439.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301160735|emb|CBW20266.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312915348|dbj|BAJ39322.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321223111|gb|EFX48181.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|323132582|gb|ADX20012.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|332991059|gb|AEF10042.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|380465644|gb|AFD61047.1| hypothetical protein UMN798_4602 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|414011328|gb|EKS95293.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414012607|gb|EKS96521.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414012831|gb|EKS96738.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414026899|gb|EKT10156.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414027440|gb|EKT10679.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414030156|gb|EKT13291.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414040922|gb|EKT23520.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414041624|gb|EKT24189.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414046045|gb|EKT28398.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414055052|gb|EKT36973.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414060828|gb|EKT42320.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
Length = 332
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|194446261|ref|YP_002043494.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|418807868|ref|ZP_13363425.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418811602|ref|ZP_13367127.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418816205|ref|ZP_13371698.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418822438|ref|ZP_13377851.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418828487|ref|ZP_13383521.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418832566|ref|ZP_13387503.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418833855|ref|ZP_13388766.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418841232|ref|ZP_13396051.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418848468|ref|ZP_13403206.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418854520|ref|ZP_13409188.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|194404924|gb|ACF65146.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|392777697|gb|EJA34379.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392778169|gb|EJA34849.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392788113|gb|EJA44651.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392790426|gb|EJA46924.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392790521|gb|EJA47016.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392797196|gb|EJA53514.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392805763|gb|EJA61878.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392808561|gb|EJA64609.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392822768|gb|EJA78572.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392824375|gb|EJA80161.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
Length = 332
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FIDTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVTVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|168243640|ref|ZP_02668572.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194448858|ref|YP_002048234.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|386589569|ref|YP_006085969.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|417354256|ref|ZP_12130739.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|417362043|ref|ZP_12135791.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|417491911|ref|ZP_12173108.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|417535457|ref|ZP_12188924.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|418514870|ref|ZP_13081064.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|419731159|ref|ZP_14258083.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419736639|ref|ZP_14263468.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419737299|ref|ZP_14264111.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419742757|ref|ZP_14269428.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419748402|ref|ZP_14274899.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|421572491|ref|ZP_16018140.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421574344|ref|ZP_16019967.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421580873|ref|ZP_16026426.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421582440|ref|ZP_16027977.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|194407162|gb|ACF67381.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205337347|gb|EDZ24111.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|353562279|gb|EHC28970.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|353582408|gb|EHC43063.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|353630230|gb|EHC77842.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|353656757|gb|EHC97411.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|366077677|gb|EHN41687.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|381290979|gb|EIC32234.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381292289|gb|EIC33493.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381306014|gb|EIC46912.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381313400|gb|EIC54185.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|381314392|gb|EIC55162.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|383796613|gb|AFH43695.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|402517037|gb|EJW24442.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402518914|gb|EJW26281.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402525196|gb|EJW32488.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402533108|gb|EJW40292.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
Length = 332
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|417951078|ref|ZP_12594187.1| tRNA-dihydrouridine synthase A [Vibrio splendidus ATCC 33789]
gi|342805351|gb|EGU40621.1| tRNA-dihydrouridine synthase A [Vibrio splendidus ATCC 33789]
Length = 334
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 124/215 (57%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + +S + T++P++VK RIG+DD DSY L
Sbjct: 98 NVGCPSDRVQ-NGRFGACLMAEPELVADCVSAMKEVTDIPITVKTRIGIDDQDSYEFLTK 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS F IH+RKA L+G+SP ENR IPPL Y+ Y + +DF DL +NGGI
Sbjct: 157 FISTVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYDRAYQIKKDFSDLVIAVNGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VM+GR AY +P + L VD I+G + R QVVE+ Y +
Sbjct: 217 TTLEQTKEHLQH-LDGVMIGREAYHSP-FILAEVDQQIFGLDTPIKKRSQVVEEMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + G + H+ + +L F S PG ++R
Sbjct: 275 REL-SKGASLGHIS---RHMLGLFQSMPGARQWRR 305
>gi|198244614|ref|YP_002218138.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|207859397|ref|YP_002246048.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|375121668|ref|ZP_09766835.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|378957799|ref|YP_005215286.1| hypothetical protein SPUL_4233 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|418847343|ref|ZP_13402104.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418859768|ref|ZP_13414359.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418864917|ref|ZP_13419433.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|421359864|ref|ZP_15810151.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421362308|ref|ZP_15812563.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421366288|ref|ZP_15816492.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421373220|ref|ZP_15823361.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421377635|ref|ZP_15827730.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421380350|ref|ZP_15830413.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421385699|ref|ZP_15835720.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421389299|ref|ZP_15839283.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421393839|ref|ZP_15843782.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421400104|ref|ZP_15849995.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421402594|ref|ZP_15852451.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421407490|ref|ZP_15857298.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421412363|ref|ZP_15862118.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421416418|ref|ZP_15866138.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421420567|ref|ZP_15870244.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421427100|ref|ZP_15876724.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421428966|ref|ZP_15878567.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421436344|ref|ZP_15885876.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421440629|ref|ZP_15890105.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421445435|ref|ZP_15894861.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421447540|ref|ZP_15896939.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|421886671|ref|ZP_16317845.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|436624284|ref|ZP_20514958.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436698052|ref|ZP_20518275.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|436795787|ref|ZP_20522518.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436807028|ref|ZP_20527142.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436813042|ref|ZP_20531327.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436846750|ref|ZP_20539520.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436850714|ref|ZP_20541382.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436859829|ref|ZP_20547715.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436866727|ref|ZP_20552156.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436871151|ref|ZP_20554549.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436880927|ref|ZP_20560526.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436889814|ref|ZP_20565480.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436898136|ref|ZP_20570147.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436903862|ref|ZP_20574131.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436913077|ref|ZP_20578644.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436917495|ref|ZP_20581003.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436925178|ref|ZP_20585652.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436937528|ref|ZP_20592655.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436944730|ref|ZP_20597140.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436947067|ref|ZP_20598224.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436959007|ref|ZP_20603458.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436973524|ref|ZP_20610787.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436987555|ref|ZP_20616101.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436994953|ref|ZP_20619117.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437006458|ref|ZP_20622695.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437017141|ref|ZP_20626198.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437027814|ref|ZP_20630521.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437041703|ref|ZP_20635663.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437047723|ref|ZP_20639070.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437056212|ref|ZP_20643747.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437069008|ref|ZP_20651022.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437077966|ref|ZP_20655824.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437083808|ref|ZP_20659375.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437089230|ref|ZP_20662026.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437106080|ref|ZP_20667220.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437120160|ref|ZP_20671298.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437129117|ref|ZP_20675743.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437137020|ref|ZP_20680088.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437144740|ref|ZP_20685211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437151618|ref|ZP_20689425.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437163836|ref|ZP_20696814.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437167610|ref|ZP_20698881.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437174616|ref|ZP_20702261.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437187466|ref|ZP_20710006.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437235734|ref|ZP_20713864.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437258921|ref|ZP_20716821.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437271113|ref|ZP_20723474.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437274146|ref|ZP_20725147.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437284399|ref|ZP_20729570.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437307422|ref|ZP_20734815.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437333401|ref|ZP_20742337.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437337522|ref|ZP_20743277.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437360475|ref|ZP_20748283.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437412006|ref|ZP_20753179.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437439735|ref|ZP_20757354.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437460086|ref|ZP_20761295.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437475694|ref|ZP_20766867.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437493315|ref|ZP_20772089.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437515892|ref|ZP_20777999.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437536148|ref|ZP_20781659.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437558984|ref|ZP_20785400.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437574563|ref|ZP_20789835.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437591341|ref|ZP_20794769.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437610848|ref|ZP_20801159.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437615406|ref|ZP_20802212.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437642835|ref|ZP_20808283.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437663317|ref|ZP_20813928.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437685253|ref|ZP_20819019.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437697203|ref|ZP_20822766.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437713357|ref|ZP_20827338.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437736658|ref|ZP_20832849.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437748959|ref|ZP_20833763.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437805846|ref|ZP_20839380.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437902940|ref|ZP_20849931.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|438088731|ref|ZP_20860021.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438103842|ref|ZP_20865650.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438109709|ref|ZP_20867560.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438136523|ref|ZP_20874437.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|445139554|ref|ZP_21384431.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445151741|ref|ZP_21390512.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|445167291|ref|ZP_21394359.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445227985|ref|ZP_21404518.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445341125|ref|ZP_21416641.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445347558|ref|ZP_21419213.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445360696|ref|ZP_21423627.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|197939130|gb|ACH76463.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|206711200|emb|CAR35576.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326625935|gb|EGE32280.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|357208410|gb|AET56456.1| hypothetical protein SPUL_4233 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|379984067|emb|CCF90118.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|392808422|gb|EJA64472.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392828895|gb|EJA84580.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392829377|gb|EJA85054.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|395983498|gb|EJH92690.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395990633|gb|EJH99763.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395991297|gb|EJI00422.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395997052|gb|EJI06094.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|395998956|gb|EJI07982.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396004336|gb|EJI13319.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396016097|gb|EJI24966.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396016184|gb|EJI25052.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396017911|gb|EJI26775.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396025883|gb|EJI34657.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396030910|gb|EJI39639.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396031000|gb|EJI39728.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396042678|gb|EJI51299.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396044595|gb|EJI53191.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396045706|gb|EJI54298.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396052595|gb|EJI61101.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396053704|gb|EJI62198.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396059828|gb|EJI68276.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396065738|gb|EJI74111.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396066122|gb|EJI74487.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396074842|gb|EJI83126.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|434940545|gb|ELL47161.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434962021|gb|ELL55254.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434963196|gb|ELL56319.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434968984|gb|ELL61710.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434975467|gb|ELL67755.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434977488|gb|ELL69606.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434987228|gb|ELL78870.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434987571|gb|ELL79211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434993859|gb|ELL85243.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|434998886|gb|ELL90099.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|435001265|gb|ELL92383.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435004449|gb|ELL95412.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435006805|gb|ELL97664.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435013684|gb|ELM04306.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435017957|gb|ELM08434.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435024750|gb|ELM14955.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435031337|gb|ELM21309.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435035092|gb|ELM24939.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435037821|gb|ELM27604.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435040543|gb|ELM30299.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435053716|gb|ELM43153.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435055052|gb|ELM44471.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435058085|gb|ELM47441.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435059047|gb|ELM48338.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435063298|gb|ELM52451.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435070606|gb|ELM59589.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435082225|gb|ELM70849.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435084867|gb|ELM73433.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435085969|gb|ELM74516.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435092972|gb|ELM81314.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435098076|gb|ELM86327.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435099725|gb|ELM87917.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435102578|gb|ELM90682.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435106892|gb|ELM94889.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435115377|gb|ELN03144.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435121259|gb|ELN08805.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435127377|gb|ELN14739.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435127464|gb|ELN14825.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435135039|gb|ELN22149.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435138739|gb|ELN25764.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435140410|gb|ELN27371.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435144519|gb|ELN31360.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435151384|gb|ELN38036.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435157152|gb|ELN43614.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435157727|gb|ELN44165.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435165585|gb|ELN51611.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435170439|gb|ELN56187.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435176408|gb|ELN61787.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435185396|gb|ELN70263.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435186499|gb|ELN71330.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435187736|gb|ELN72479.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435189028|gb|ELN73675.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435196976|gb|ELN81293.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435203871|gb|ELN87608.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435210595|gb|ELN93836.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435212364|gb|ELN95362.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435222010|gb|ELO04148.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435223560|gb|ELO05594.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435228452|gb|ELO09896.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435229138|gb|ELO10528.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435239405|gb|ELO19894.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435240232|gb|ELO20648.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435245792|gb|ELO25821.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435252278|gb|ELO31875.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435254935|gb|ELO34318.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435262414|gb|ELO41504.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435266742|gb|ELO45475.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435267111|gb|ELO45823.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435275676|gb|ELO53753.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435276384|gb|ELO54395.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435285391|gb|ELO62793.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435286707|gb|ELO63956.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435301929|gb|ELO77928.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435311884|gb|ELO85920.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435317405|gb|ELO90456.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435320695|gb|ELO93214.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435322858|gb|ELO95045.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435332182|gb|ELP03142.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|444854188|gb|ELX79254.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444855224|gb|ELX80273.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|444865568|gb|ELX90337.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444866642|gb|ELX91366.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444871796|gb|ELX96190.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444876809|gb|ELY00968.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444884961|gb|ELY08770.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
Length = 332
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FIDTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|168231239|ref|ZP_02656297.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194470364|ref|ZP_03076348.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194456728|gb|EDX45567.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205334267|gb|EDZ21031.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 332
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 127/238 (53%), Gaps = 7/238 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCDFI
Sbjct: 100 GCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFI 158
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI +
Sbjct: 159 DTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKS 218
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 219 LEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIERE 276
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 277 L----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|145642466|ref|ZP_01798016.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R3021]
gi|145272834|gb|EDK12730.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 22.4-21]
Length = 327
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 131/237 (55%), Gaps = 15/237 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCDFI
Sbjct: 98 GCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCDFI 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI T
Sbjct: 157 EKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYIRVYQLKRDFPHLTIAINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG +D A++ + +T + VE Y +
Sbjct: 216 IEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVESMLPYIEQQ 273
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 274 L----SQGIHLNHIVRHILGAFQNCKGARQWRRYLSENAFKQGAGIEVVETALSFVE 326
>gi|254462050|ref|ZP_05075466.1| tRNA-dihydrouridine synthase A [Rhodobacterales bacterium HTCC2083]
gi|206678639|gb|EDZ43126.1| tRNA-dihydrouridine synthase A [Rhodobacteraceae bacterium
HTCC2083]
Length = 305
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 117/215 (54%), Gaps = 6/215 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM DPK V E + + + V V+VKCRIGVDD + L +
Sbjct: 65 NVGCPSDRVQ-NGAFGAILMRDPKLVAECCAAMIKASAVEVTVKCRIGVDDQTPSDVLPE 123
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V+ R F IH+RKA L G+SP ENR IPPL Y + FP L +LNGGI
Sbjct: 124 FLARVAGAGVGR-FTIHARKAWLQGLSPKENRDIPPLDYGLVQQMKGLFPALHLSLNGGI 182
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + AL +G VM+GRAAY P L D IYGAP TR +V + Y D
Sbjct: 183 TTLAQAQDALERGMDGVMIGRAAYHQPADILMEADHMIYGAPKVERTREDIVMEMLPYID 242
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A + G + V + +L F +PG +KR
Sbjct: 243 AHIAEGGK----LGQVTRHMLGIFAGQPGARYWKR 273
>gi|398340089|ref|ZP_10524792.1| tRNA-dihydrouridine synthase A [Leptospira kirschneri serovar Bim
str. 1051]
gi|418677492|ref|ZP_13238768.1| tRNA dihydrouridine synthase A [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418687110|ref|ZP_13248273.1| tRNA dihydrouridine synthase A [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418741589|ref|ZP_13297963.1| tRNA dihydrouridine synthase A [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421090016|ref|ZP_15550817.1| tRNA dihydrouridine synthase A [Leptospira kirschneri str.
200802841]
gi|421131812|ref|ZP_15591989.1| tRNA dihydrouridine synthase A [Leptospira kirschneri str.
2008720114]
gi|400322440|gb|EJO70298.1| tRNA dihydrouridine synthase A [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410001279|gb|EKO51893.1| tRNA dihydrouridine synthase A [Leptospira kirschneri str.
200802841]
gi|410356748|gb|EKP04054.1| tRNA dihydrouridine synthase A [Leptospira kirschneri str.
2008720114]
gi|410738506|gb|EKQ83241.1| tRNA dihydrouridine synthase A [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410751037|gb|EKR08016.1| tRNA dihydrouridine synthase A [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 347
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 125/215 (58%), Gaps = 6/215 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + ++P++VKCRIG+ D++ LC
Sbjct: 98 NVGCPSDRVK-EGNFGACLMETPEKVAELTFAMDTSVSIPITVKCRIGIPGKDTFEDLCK 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + R FI+H+R A+L G +PA+NR +PPL+Y Y +L ++FPDL +NGG+
Sbjct: 157 FIECVRQ-TGVRRFIVHARIAILGGFTPAQNRQVPPLRYTYVESLKKEFPDLLIEINGGV 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L K VM+GRAAY+ P Y VD+ +G L+RR+V+ + + Y +
Sbjct: 216 RTLTSIRERLEKN-DGVMIGRAAYETP-YLFSEVDSLFFGENLPPLSRREVLLRMKDYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
++ N +PH ++ +L F+ E G F+R
Sbjct: 274 EVILKEKNGKPH--HALRHILGLFYGEKGARSFRR 306
>gi|432790833|ref|ZP_20024951.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE78]
gi|432796823|ref|ZP_20030853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE79]
gi|431344148|gb|ELG31102.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE78]
gi|431346808|gb|ELG33702.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE79]
Length = 345
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 129/242 (53%), Gaps = 11/242 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
L GTY + + + +L F PG ++R + LE+ + +
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEQALKLV 341
Query: 241 PD 242
D
Sbjct: 342 AD 343
>gi|418866047|ref|ZP_13420511.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|392840561|gb|EJA96096.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
Length = 332
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKIRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FIDTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|375004122|ref|ZP_09728457.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|353073460|gb|EHB39225.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
Length = 332
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTISINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|110807934|ref|YP_691454.1| tRNA-dihydrouridine synthase A [Shigella flexneri 5 str. 8401]
gi|384545679|ref|YP_005729743.1| yjbN family TIM-barrel protein [Shigella flexneri 2002017]
gi|417709427|ref|ZP_12358449.1| tRNA-dihydrouridine synthase A [Shigella flexneri VA-6]
gi|424840305|ref|ZP_18264942.1| tRNA-dihydrouridine synthase A [Shigella flexneri 5a str. M90T]
gi|110617482|gb|ABF06149.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|281603466|gb|ADA76450.1| TIM-barrel protein, yjbN family [Shigella flexneri 2002017]
gi|332998117|gb|EGK17721.1| tRNA-dihydrouridine synthase A [Shigella flexneri VA-6]
gi|383469357|gb|EID64378.1| tRNA-dihydrouridine synthase A [Shigella flexneri 5a str. M90T]
Length = 347
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 123/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 113 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 171
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 172 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 231
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 232 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 289
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + +++ +L F PG ++R
Sbjct: 290 HELSQGTY------LGHIIRHMLGLFQGIPGARQWRR 320
>gi|86148209|ref|ZP_01066506.1| NifR3/Smm1 family protein [Vibrio sp. MED222]
gi|218708347|ref|YP_002415968.1| tRNA-dihydrouridine synthase A [Vibrio splendidus LGP32]
gi|85833979|gb|EAQ52140.1| NifR3/Smm1 family protein [Vibrio sp. MED222]
gi|218321366|emb|CAV17316.1| tRNA-dihydrouridine synthase A [Vibrio splendidus LGP32]
Length = 333
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 123/215 (57%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + +S + T++P++VK RIG+DD DSY L
Sbjct: 97 NVGCPSDRVQ-NGRFGACLMAEPELVADCVSAMKEVTDIPITVKTRIGIDDQDSYEFLTK 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y+ Y + +DF DL +NGGI
Sbjct: 156 FVSTVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYDRAYQIKKDFSDLVIAVNGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VM+GR AY +P + L VD I+G + R QVVE+ Y +
Sbjct: 216 TTLEQTKEHLQH-LDGVMIGREAYHSP-FILAEVDQQIFGLDTPIKKRSQVVEEMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N + + + +L F S PG ++R
Sbjct: 274 RQL----SNGASLGHISRHMLGLFQSMPGARQWRR 304
>gi|399017469|ref|ZP_10719661.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. CF444]
gi|398103343|gb|EJL93514.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. CF444]
Length = 322
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 126/219 (57%), Gaps = 8/219 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + + + ++ V+VK RIG+DD +SY+ + D
Sbjct: 79 NCGCPSERVQ-KGAFGACLMAEPTLVADCVKAMRDAVSIDVTVKHRIGIDDVESYDFVRD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K++ + ++ FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFP+L +NGGI
Sbjct: 138 FVGKIAE-AGSKTFIVHARNAVLKGLSPKENREIPPLKYDYAYRLKRDFPELEILINGGI 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGL--TRRQVVEKYQIY 180
TV E++ L K VM+GR AY NP+ G D Y G+ R +V+E Y
Sbjct: 197 KTVAEIDEHL-KHVDGVMLGREAYHNPFLMAG-FDARYYAELDGGVQANRSEVIEAMMAY 254
Query: 181 GDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKR 217
A L +G+ +R + + +L PG F++
Sbjct: 255 ASAQLALHGDGGKGLRLNSITRHMLGLMAGMPGARAFRQ 293
>gi|417543207|ref|ZP_12194442.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|353657123|gb|EHC97661.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
Length = 332
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVVVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|254514697|ref|ZP_05126758.1| tRNA-dihydrouridine synthase A [gamma proteobacterium NOR5-3]
gi|219676940|gb|EED33305.1| tRNA-dihydrouridine synthase A [gamma proteobacterium NOR5-3]
Length = 343
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 123/217 (56%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G FG LM +P+ V +A+S + + + V+VK RIG+D +SY +LC
Sbjct: 109 NCGCPSDRVQ-NGAFGACLMAEPELVRDAVSAMRSACEIDVTVKHRIGIDHMESYEELCH 167
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ FI+H+RKA L G+SP ENR +PPL Y + Y L RDFP LT +NGGI
Sbjct: 168 FVGTVAD-GGCSVFIVHARKAWLKGLSPKENREVPPLTYPWVYRLKRDFPALTIVINGGI 226
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++D+ L + VM+GR+AY NPW L VD ++G P R +++ Y +
Sbjct: 227 ESIDDCEPHLAR-VDGVMLGRSAYHNPW-VLAEVDRRLFGEPQQPRCREDIIDALMPYVE 284
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GT N + + +L + PG ++R
Sbjct: 285 KELASGTRLNQ------ITRHILGLYQEVPGAKRYRR 315
>gi|200388599|ref|ZP_03215211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199605697|gb|EDZ04242.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 332
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|432619360|ref|ZP_19855456.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE75]
gi|431150292|gb|ELE51349.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE75]
Length = 331
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 123/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + + VV Y +
Sbjct: 216 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDVDPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 274 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 304
>gi|88858983|ref|ZP_01133624.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas tunicata D2]
gi|88819209|gb|EAR29023.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas tunicata D2]
Length = 337
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 133/239 (55%), Gaps = 16/239 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P V + ++ + TN+PV+VK RIG+DD DSY LC I
Sbjct: 107 GCPSDRVQ-NGRFGACLMAEPNLVAQCVAAMKEQTNMPVTVKTRIGIDDQDSYEFLCALI 165
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
++ FIIH+RKA L+G+SP ENR IPPL YE Y L +D+P ++NGG+ T
Sbjct: 166 DACIAVD-CNDFIIHARKAWLSGLSPKENRDIPPLDYERVYQLKKDYPQTHISINGGVKT 224
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSS-GLTRRQVVEKYQIYGDA 183
+++ A L + VM+GR AY NP Y L VD+AIYG S+ L+R Q V Y +A
Sbjct: 225 IEQSLAHL-QFIDGVMMGREAYANP-YLLTQVDSAIYGDASTPVLSRHQAVRAMYDYFEA 282
Query: 184 ILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
+ T G + H V + +L F PG F+R K DA + F+ E
Sbjct: 283 EM-TGGASFWH---VARHMLGIFQGVPGGRAFRRHLSENGHKKDADISVMEQALGFVAE 337
>gi|300023380|ref|YP_003755991.1| TIM-barrel protein, yjbN family [Hyphomicrobium denitrificans ATCC
51888]
gi|299525201|gb|ADJ23670.1| TIM-barrel protein, yjbN family [Hyphomicrobium denitrificans ATCC
51888]
Length = 335
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 125/238 (52%), Gaps = 8/238 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V ++ + A+ VPV+VKCRIG+DD D+ L
Sbjct: 92 NVGCPSDRVQ-EGRFGACLMSEPELVAACVAAMRAHQPVPVTVKCRIGIDDQDAEEDLRR 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ TR F++H+RKA L G+SP ENR +PPL YE Y L PDL +NGGI
Sbjct: 151 FIDVVADAGCTR-FVVHARKAWLKGLSPKENREVPPLDYERVYRLKAARPDLEIVINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E A L VM+GRAAYQNP L VD I+ A + TR +E Y +
Sbjct: 210 ETIEEARAHL-DHVDGVMLGRAAYQNP-AILADVDRLIFDADTESPTRAAALEAMLPYIE 267
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
L G + +V + +L +H +P F+R + L E I +
Sbjct: 268 QHLKRGGR----LSNVTRHVLGLYHGQPRGKTFRRHLSEGATSADATADVLREAIAIV 321
>gi|237809463|ref|YP_002893903.1| yjbN family TIM-barrel protein [Tolumonas auensis DSM 9187]
gi|237501724|gb|ACQ94317.1| TIM-barrel protein, yjbN family [Tolumonas auensis DSM 9187]
Length = 338
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 121/213 (56%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + V + ++ + A +PV+VK RIG+D+ DSY LCDFI
Sbjct: 104 GCPSDRVQ-NGRFGACLMASAQLVADCVAAMRAEVQIPVTVKTRIGIDELDSYAFLCDFI 162
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V + FI+H+RKA L+G+SP ENR IPPL YE Y L RD+P LT +NGGI
Sbjct: 163 ETVQQ-TGCNTFIVHARKAWLSGLSPKENRDIPPLDYERVYQLKRDYPHLTIAINGGITD 221
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+ + L+ VMVGR AYQNP Y L VD ++ P L+R + V + Y DA
Sbjct: 222 LAQAKHHLQY-VDGVMVGREAYQNP-YMLAQVDAQLFADPHPVLSRHETVMQMLPYIDAH 279
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G ++ + + +L F PG ++R
Sbjct: 280 LQAGG----YLSHITRHMLGLFQGVPGARAWRR 308
>gi|410623060|ref|ZP_11333880.1| tRNA-dihydrouridine synthase A [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410157522|dbj|GAC29254.1| tRNA-dihydrouridine synthase A [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 300
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 121/213 (56%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM P+ V E +S + + ++PV+VKCRIG+DD D Y L F+
Sbjct: 56 GCPSDRVK-NGSFGACLMAMPETVAECVSAMQSAVSIPVTVKCRIGIDDMDDYKGLSRFV 114
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ HFIIH+RKA L G+SP ENR IPPL Y+ Y L ++F L ++NGGI T
Sbjct: 115 SLVAE-GGCEHFIIHARKAWLQGLSPKENRDIPPLNYQRVYDLKKEFSQLHISINGGITT 173
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ L K VM+GR Y NP Y L +VD+ +YG +TR +VV K Y I
Sbjct: 174 LEDSQQHL-KLIDGVMMGREIYSNP-YILSNVDSLLYGDTGVAITREEVVAKMTAY---I 228
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
G V + + +L F + G +++R
Sbjct: 229 KGQVAQG-SKVWHIARHVLGLFQGQAGGRIWRR 260
>gi|420376104|ref|ZP_14875894.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
gi|391307140|gb|EIQ64879.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
Length = 332
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVEAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y+ Y L RDFP LT ++NGGI
Sbjct: 157 FINMVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYDRVYQLKRDFPQLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VMVGR AYQNP L VD I+ A + VV Y +
Sbjct: 217 KSLEEAKTHLQH-MDGVMVGREAYQNPG-ILASVDREIFAATTEDTDPVTVVRAMYPYIE 274
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + V + +L F PG ++R
Sbjct: 275 RELSKGTY------LGHVTRHMLGLFQGIPGARQWRR 305
>gi|389877897|ref|YP_006371462.1| tRNA-dihydrouridine synthase A [Tistrella mobilis KA081020-065]
gi|388528681|gb|AFK53878.1| tRNA-dihydrouridine synthase A [Tistrella mobilis KA081020-065]
Length = 330
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 122/215 (56%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V E M+ + A +VPV+VKCRIG+DD D L
Sbjct: 92 NCGCPSDRVQS-GRFGACLMAEPELVAECMAAMKAAVDVPVTVKCRIGIDDQDETETLFR 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+S + F +H+RKA L G+SP ENR IPPL Y +AL R PDL +NGG+
Sbjct: 151 FVETVAS-AGVGVFYVHARKAWLKGLSPKENREIPPLNYPLVHALKRARPDLEILINGGL 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+T+D+ + G VM GRAAY +P Y L VDT YG + R ++ E+ Y +
Sbjct: 210 STLDQAGVEIGGGLDGVMFGRAAYHDP-YILAEVDTRFYGETTRIPDRFEIAERMLPYIE 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A + G N + + + +L F PG ++R
Sbjct: 269 AEC-SRGTN---LIAITRHMLGLFQGLPGARAYRR 299
>gi|432856293|ref|ZP_20083733.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE144]
gi|431396119|gb|ELG79605.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE144]
Length = 345
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 123/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDVDPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 HELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|415857056|ref|ZP_11531885.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|417704087|ref|ZP_12353190.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-218]
gi|417714396|ref|ZP_12363352.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-272]
gi|417719249|ref|ZP_12368136.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-227]
gi|417725059|ref|ZP_12373851.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-304]
gi|417730310|ref|ZP_12378999.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-671]
gi|417735422|ref|ZP_12384064.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2747-71]
gi|417740171|ref|ZP_12388742.1| tRNA-dihydrouridine synthase A [Shigella flexneri 4343-70]
gi|417745259|ref|ZP_12393779.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2930-71]
gi|417830660|ref|ZP_12477195.1| tRNA-dihydrouridine synthase A [Shigella flexneri J1713]
gi|418258885|ref|ZP_12882011.1| tRNA-dihydrouridine synthase A [Shigella flexneri 6603-63]
gi|420322314|ref|ZP_14824136.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
2850-71]
gi|420333272|ref|ZP_14834914.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-1770]
gi|420343712|ref|ZP_14845176.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-404]
gi|420375879|ref|ZP_14875691.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
gi|313648753|gb|EFS13193.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|332751993|gb|EGJ82386.1| tRNA-dihydrouridine synthase A [Shigella flexneri 4343-70]
gi|332752162|gb|EGJ82554.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-671]
gi|332753251|gb|EGJ83632.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2747-71]
gi|332764755|gb|EGJ94984.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2930-71]
gi|332999047|gb|EGK18636.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-272]
gi|332999143|gb|EGK18730.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-218]
gi|333014208|gb|EGK33564.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-304]
gi|333014419|gb|EGK33770.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-227]
gi|335572601|gb|EGM58972.1| tRNA-dihydrouridine synthase A [Shigella flexneri J1713]
gi|391245817|gb|EIQ05083.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
2850-71]
gi|391246770|gb|EIQ06028.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-1770]
gi|391263439|gb|EIQ22445.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-404]
gi|391308582|gb|EIQ66278.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
gi|397895072|gb|EJL11506.1| tRNA-dihydrouridine synthase A [Shigella flexneri 6603-63]
Length = 345
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 123/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + +++ +L F PG ++R
Sbjct: 288 HELSQGTY------LGHIIRHMLGLFQGIPGARQWRR 318
>gi|387773516|ref|ZP_10128874.1| tRNA dihydrouridine synthase A [Haemophilus parahaemolyticus HK385]
gi|386904865|gb|EIJ69648.1| tRNA dihydrouridine synthase A [Haemophilus parahaemolyticus HK385]
Length = 321
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 125/217 (57%), Gaps = 13/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + +PV+VK RIG+DD DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGMFGACLMGKADLVADCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV S FI+H+RKA L+G+SP ENR IPPL YE Y L RDF L ++NGGI
Sbjct: 152 FIEKVQPYS--NDFIVHARKAWLSGLSPKENREIPPLDYERVYQLKRDFSHLNISINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L + VMVGR AYQNP LG +D+ I+G +T R+ VEK Y +
Sbjct: 210 KTIEEIKHHL-QFVDGVMVGREAYQNP-SLLGEIDSQIFGENRPLVTAREAVEKMLPYIE 267
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G Y N+ +++ +L F + G ++R
Sbjct: 268 QELAKGVYLNH------IVRHILGAFQNCKGARQWRR 298
>gi|378775268|ref|YP_005177511.1| tRNA-dihydrouridine synthase A [Pasteurella multocida 36950]
gi|356597816|gb|AET16542.1| tRNA-dihydrouridine synthase A [Pasteurella multocida 36950]
Length = 327
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 134/238 (56%), Gaps = 19/238 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + ++ + ++PV+VK RIG+DD DSY LC+F+
Sbjct: 98 GCPSDRVQ-NGMFGACLMAKADLVADCVNAMQTEVSIPVTVKTRIGIDDLDSYEFLCEFV 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + FIIH+RKA L+G+SP ENR IPPL YE Y L RDF L ++NGGI T
Sbjct: 157 QKVHE-AGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQLKRDFAHLHMSINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG++D A++ +T R+ VEK Y +
Sbjct: 216 LEEMQQHLQY-MDGVMVGREAYQNP-SLLGYIDQALFDPTCPVVTPREAVEKMFPYIEQQ 273
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ V++ +L F S G ++R K A + + SF+
Sbjct: 274 LSQGVYLNH------VVRHMLGAFQSCKGARQWRRYLSENAHKTGAGLEVVEKALSFV 325
>gi|381160439|ref|ZP_09869671.1| tRNA dihydrouridine synthase A [Thiorhodovibrio sp. 970]
gi|380878503|gb|EIC20595.1| tRNA dihydrouridine synthase A [Thiorhodovibrio sp. 970]
Length = 315
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 134/236 (56%), Gaps = 15/236 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P+ V + ++ + A ++PVSVK RIG+DD DSY +L DF+
Sbjct: 82 GCPSDRVQ-NGRFGACLMAEPELVADCVAAMKAAVSIPVSVKTRIGIDDRDSYEELADFV 140
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
++S+ + ++H+RKA L G+SP ENR +PPL+Y+ L DFP L LNGGI T
Sbjct: 141 TRISA-AGCDLLVLHARKAWLQGLSPRENREVPPLRYDVALQLRADFPRLPLVLNGGITT 199
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ + VM+GR AYQNPW L D+ ++G +R QV+E++ Y +
Sbjct: 200 LEQAQYWCER-LDGVMIGREAYQNPWL-LAAADSELFGDAHPLPSRHQVLERFYPYVERC 257
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G P + + + LL F+ PG ++R +A A + +T + +
Sbjct: 258 L---GEGVP-LNSISRHLLGLFNGCPGARRWRRLLSEQAHRAGAGVEVLRTAAALV 309
>gi|342904813|ref|ZP_08726611.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21621]
gi|341952690|gb|EGT79213.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21621]
Length = 329
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 132/239 (55%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 155 FIEKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQLKRDFPHLTIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LG +D A++ + +T + V+ Y +
Sbjct: 214 KTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVQSMLPYIE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 272 QQL----SQGIHLNHIVRHMLGAFQNCKGARQWRRYLSENAFKQGAGIEVVETALSFVE 326
>gi|83592956|ref|YP_426708.1| tRNA-dihydrouridine synthase A [Rhodospirillum rubrum ATCC 11170]
gi|83575870|gb|ABC22421.1| Dihydrouridine synthase TIM-barrel protein yjbN [Rhodospirillum
rubrum ATCC 11170]
Length = 349
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 130/245 (53%), Gaps = 13/245 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V+ G FG LM DP V E +S +A +N PV++K RIG+DD DSY+QL
Sbjct: 105 NVGCPSDRVSS-GRFGACLMADPALVAECLSAMAEASNAPVTIKHRIGIDDLDSYDQLVG 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V+ S I+H+RKA L G+SP ENR IPPL+++ + L DFP L LNGGI
Sbjct: 164 FVDQVAR-SGIATIIVHARKAWLKGLSPKENREIPPLRHDVVHRLKADFPGLEVILNGGI 222
Query: 123 NTVDEVNAALRKG------AHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEK 176
T+ + L G VM+GRAAY+ P Y L D I+G + +R +V
Sbjct: 223 TTLTQALDHLGSGDPAAPAVDGVMIGRAAYETP-YMLAQADGLIFGEATPAPSRHEVALA 281
Query: 177 YQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEET 236
Y DA+ P V+ + + +L FH +PG ++R A L +
Sbjct: 282 LLPYLDAM---TARGEP-VKRLTRHILGLFHGQPGARAYRRHLGEAGVRPDATAQVLIDA 337
Query: 237 IVAIP 241
+ IP
Sbjct: 338 LAHIP 342
>gi|30064638|ref|NP_838809.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|56480527|ref|NP_709871.2| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 301]
gi|30042897|gb|AAP18620.1| hypothetical protein S3574 [Shigella flexneri 2a str. 2457T]
gi|56384078|gb|AAN45578.2| conserved hypothetical protein [Shigella flexneri 2a str. 301]
Length = 339
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 123/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 105 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 164 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 224 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 281
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + +++ +L F PG ++R
Sbjct: 282 HELSQGTY------LGHIIRHMLGLFQGIPGARQWRR 312
>gi|390572878|ref|ZP_10253071.1| YjbN family TIM-barrel protein [Burkholderia terrae BS001]
gi|389935131|gb|EIM97066.1| YjbN family TIM-barrel protein [Burkholderia terrae BS001]
Length = 333
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/188 (45%), Positives = 113/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVDD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMKEPQLVADCVKAMRDAVSVPVTVKHRIGVDDVEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 155 FVGTIAE-AGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQLEIIINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV A L+ VM+GR AY NP Y L VD YG+ + TR + K Y
Sbjct: 214 KTLDEVEAHLQH-VDGVMLGREAYHNP-YVLADVDARFYGSTDAAPTREEAEAKLIEYCR 271
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 272 AELARGTY 279
>gi|260599558|ref|YP_003212129.1| tRNA-dihydrouridine synthase A [Cronobacter turicensis z3032]
gi|260218735|emb|CBA34083.1| tRNA-dihydrouridine synthase A [Cronobacter turicensis z3032]
Length = 349
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 122/217 (56%), Gaps = 15/217 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCDF+
Sbjct: 117 GCPSDRVQ-NGRFGACLMGEAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFV 175
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI T
Sbjct: 176 GTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTMSINGGIKT 235
Query: 125 VDEVNAALRKGAHH--VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY-- 180
+D+V A L AH VMVGR AYQNP L VD I+G + VV Y
Sbjct: 236 LDDVKAHL---AHMDGVMVGREAYQNPGL-LASVDREIFGLDTPDADPVAVVRAMYPYIE 291
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
G+ GTY + V + +L F PG ++R
Sbjct: 292 GERAKGTY------LGHVTRHMLGLFQGIPGARQWRR 322
>gi|386349687|ref|YP_006047935.1| tRNA-dihydrouridine synthase A [Rhodospirillum rubrum F11]
gi|346718123|gb|AEO48138.1| tRNA-dihydrouridine synthase A [Rhodospirillum rubrum F11]
Length = 348
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 130/245 (53%), Gaps = 13/245 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V+ G FG LM DP V E +S +A +N PV++K RIG+DD DSY+QL
Sbjct: 104 NVGCPSDRVSS-GRFGACLMADPALVAECLSAMAEASNAPVTIKHRIGIDDLDSYDQLVG 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V+ S I+H+RKA L G+SP ENR IPPL+++ + L DFP L LNGGI
Sbjct: 163 FVDQVAR-SGIATIIVHARKAWLKGLSPKENREIPPLRHDVVHRLKADFPGLEVILNGGI 221
Query: 123 NTVDEVNAALRKG------AHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEK 176
T+ + L G VM+GRAAY+ P Y L D I+G + +R +V
Sbjct: 222 TTLTQALDHLGSGDPAAPAVDGVMIGRAAYETP-YMLAQADGLIFGEATPAPSRHEVALA 280
Query: 177 YQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEET 236
Y DA+ P V+ + + +L FH +PG ++R A L +
Sbjct: 281 LLPYLDAM---TARGEP-VKRLTRHILGLFHGQPGARAYRRHLGEAGVRPDATAQVLIDA 336
Query: 237 IVAIP 241
+ IP
Sbjct: 337 LAHIP 341
>gi|300980481|ref|ZP_07175028.1| tRNA dihydrouridine synthase A [Escherichia coli MS 200-1]
gi|300992960|ref|ZP_07180115.1| tRNA dihydrouridine synthase A [Escherichia coli MS 45-1]
gi|422358341|ref|ZP_16439001.1| tRNA dihydrouridine synthase A [Escherichia coli MS 110-3]
gi|422365774|ref|ZP_16446264.1| tRNA dihydrouridine synthase A [Escherichia coli MS 153-1]
gi|422370722|ref|ZP_16451111.1| tRNA dihydrouridine synthase A [Escherichia coli MS 16-3]
gi|422380989|ref|ZP_16461160.1| tRNA dihydrouridine synthase A [Escherichia coli MS 57-2]
gi|300307783|gb|EFJ62303.1| tRNA dihydrouridine synthase A [Escherichia coli MS 200-1]
gi|300406734|gb|EFJ90272.1| tRNA dihydrouridine synthase A [Escherichia coli MS 45-1]
gi|315287860|gb|EFU47262.1| tRNA dihydrouridine synthase A [Escherichia coli MS 110-3]
gi|315291520|gb|EFU50880.1| tRNA dihydrouridine synthase A [Escherichia coli MS 153-1]
gi|315297520|gb|EFU56799.1| tRNA dihydrouridine synthase A [Escherichia coli MS 16-3]
gi|324007804|gb|EGB77023.1| tRNA dihydrouridine synthase A [Escherichia coli MS 57-2]
Length = 288
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 54 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 112
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 113 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 172
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 173 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 230
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 231 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 261
>gi|429101989|ref|ZP_19163963.1| tRNA dihydrouridine synthase A [Cronobacter turicensis 564]
gi|426288638|emb|CCJ90076.1| tRNA dihydrouridine synthase A [Cronobacter turicensis 564]
Length = 331
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 123/219 (56%), Gaps = 15/219 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+D+V A L AH VMVGR AYQNP L VD I+G + VV Y
Sbjct: 216 KTLDDVKAHL---AHMDGVMVGREAYQNPGL-LASVDREIFGLDTPDADPVAVVRAMYPY 271
Query: 181 --GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
G+ GTY + V + +L F PG ++R
Sbjct: 272 IEGELAKGTY------LGHVTRHMLGLFQGIPGARQWRR 304
>gi|218702713|ref|YP_002410342.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI39]
gi|386626991|ref|YP_006146719.1| tRNA-dihydrouridine synthase A [Escherichia coli O7:K1 str. CE10]
gi|218372699|emb|CAR20575.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI39]
gi|349740727|gb|AEQ15433.1| tRNA-dihydrouridine synthase A [Escherichia coli O7:K1 str. CE10]
Length = 345
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGVPGARQWRR 318
>gi|419812623|ref|ZP_14337487.1| tRNA-dihydrouridine synthase A [Escherichia coli O32:H37 str. P4]
gi|385154505|gb|EIF16517.1| tRNA-dihydrouridine synthase A [Escherichia coli O32:H37 str. P4]
Length = 339
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 105 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 164 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 224 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 281
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 282 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 312
>gi|416802331|ref|ZP_11886116.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str. H
2687]
gi|320649492|gb|EFX18016.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str. H
2687]
Length = 339
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 105 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 164 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 224 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 281
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 282 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 312
>gi|145638041|ref|ZP_01793669.1| hypothetical protein CGSHiHH_03013 [Haemophilus influenzae PittHH]
gi|145268759|gb|EDK08734.1| hypothetical protein CGSHiHH_03013 [Haemophilus influenzae PittHH]
Length = 327
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 131/237 (55%), Gaps = 15/237 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCDFI
Sbjct: 98 GCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCDFI 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI T
Sbjct: 157 EKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYIRVYQLKRDFPHLTIAINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG +D A++ + +T + VE Y +
Sbjct: 216 IEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVESMLPYIEQQ 273
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 274 L----SQGIHLNHIVRHILGAFQNCKGARQWRRYLSENAFKQGAGVEVVETALSFVE 326
>gi|38604722|sp|Q7UBC5.2|DUSA_SHIFL RecName: Full=tRNA-dihydrouridine synthase A
Length = 330
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 123/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 155 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 215 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 272
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + +++ +L F PG ++R
Sbjct: 273 HELSQGTY------LGHIIRHMLGLFQGIPGARQWRR 303
>gi|387824120|ref|YP_005823591.1| tRNA-dihydrouridine synthase A [Francisella cf. novicida 3523]
gi|328675719|gb|AEB28394.1| tRNA-dihydrouridine synthase A [Francisella cf. novicida 3523]
Length = 301
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 135/234 (57%), Gaps = 11/234 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG+SLM +P+ V + + + N N+P+SVKCRIG D +DSY +L +
Sbjct: 69 NVGCPSERVK-KGNFGLSLMAEPELVADCVKAMKDNLNIPISVKCRIGYDHNDSYEELYN 127
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K + + IH+RK L+G+SP ENRTIP LKY+ Y++ +DFP+L +NGGI
Sbjct: 128 FVDKQVQ-AGVDYLCIHARKGWLSGLSPKENRTIPELKYDIVYSIKKDFPNLELGINGGI 186
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L K VM+GR AY NP D Y P++G++ ++ K Y
Sbjct: 187 TTIEETQQHL-KCVDSVMIGREAYHNPM-LFKDFDNIFYNQPTTGISALEIAYKMAEY-- 242
Query: 183 AILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSFL 233
+ +N P+++ ++ K L+ F+ P +++R ++ A + V +FL
Sbjct: 243 --IKVQMDNDPYIKLNNITKHTLNLFNGLPNAKVYRRYLSENATKKEANVDTFL 294
>gi|418040056|ref|ZP_12678308.1| TIM-barrel protein, yjbN family [Escherichia coli W26]
gi|383477038|gb|EID68965.1| TIM-barrel protein, yjbN family [Escherichia coli W26]
Length = 301
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 67 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 125
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 126 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 185
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 186 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 243
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 244 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 274
>gi|261250374|ref|ZP_05942949.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417953731|ref|ZP_12596774.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938943|gb|EEX94930.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342816847|gb|EGU51740.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 333
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 121/215 (56%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + +VPV+VK RIG+DD DSY L D
Sbjct: 97 NVGCPSDRVQ-NGRFGACLMGEPQLVADCVAAMRDVVDVPVTVKTRIGIDDQDSYEFLTD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF L +NGG+
Sbjct: 156 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLAIAVNGGV 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L+ VMVGR AYQNP Y L VD I+G R QVVE+ Y +
Sbjct: 216 KTLAETKEHLQH-LDGVMVGREAYQNP-YILAEVDQQIFGLDKPVKKRTQVVEEMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F + PG ++R
Sbjct: 274 QQL----SNGAYLGHITRHMLGLFQNMPGARQWRR 304
>gi|348028264|ref|YP_004870950.1| tRNA-dihydrouridine synthase A [Glaciecola nitratireducens FR1064]
gi|347945607|gb|AEP28957.1| tRNA-dihydrouridine synthase A [Glaciecola nitratireducens FR1064]
Length = 300
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 120/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P V E + + + +PV+VKCRIG+DD D Y L
Sbjct: 54 NVGCPSDRVK-NGSFGACLMAMPDTVAECVVAMQSELTIPVTVKCRIGIDDMDDYEGLSR 112
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ HFI+H+RKA L G+SP ENR IPPL Y+ Y L ++F L ++NGGI
Sbjct: 113 FVSLVAE-GGCEHFIVHARKAWLQGLSPKENRDIPPLNYQRVYDLKKEFSQLKISINGGI 171
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
NT+++ N L+ VM+GR Y NP Y L VD+ IYG + ++R QVV +
Sbjct: 172 NTLEDSNKHLQS-IDGVMMGREVYSNP-YILSKVDSLIYGESENAISREQVV----LLMT 225
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A + V + + +L F + G +++R
Sbjct: 226 AYIKEQVAQGSRVWHIARHVLGLFQGQAGGRIWRR 260
>gi|157148055|ref|YP_001455374.1| tRNA-dihydrouridine synthase A [Citrobacter koseri ATCC BAA-895]
gi|157085260|gb|ABV14938.1| hypothetical protein CKO_03862 [Citrobacter koseri ATCC BAA-895]
Length = 345
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVAGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L VM+GR AYQNP L VD I+GA ++ VV Y +
Sbjct: 230 TSLEEAKAHLEH-MDGVMIGREAYQNPG-ILASVDREIFGATTADADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|188535214|ref|YP_001909011.1| tRNA-dihydrouridine synthase A [Erwinia tasmaniensis Et1/99]
gi|188030256|emb|CAO98143.1| tRNA-dihydrouridine synthase A [Erwinia tasmaniensis Et1/99]
Length = 332
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 130/246 (52%), Gaps = 18/246 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + T++PV+VK RIG+DD DSY LCD
Sbjct: 94 NVGCPSDRVQ-NGRFGACLMGEARLVADGIKAMRDVTSLPVTVKTRIGIDDQDSYAFLCD 152
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +LNGG+
Sbjct: 153 FIRTVSEQGGCEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTLSLNGGV 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP L VD ++G VV Y +
Sbjct: 213 KTLEEAKVHLQH-LDGVMMGREAYQNPGL-LAQVDRELFGCTLPDTDPVAVVRSMYPYIE 270
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L GTY + V + +L F PG ++R KA A + + S +
Sbjct: 271 RELAKGTY------LGHVTRHMLGLFQGVPGARQWRRYLSENAHKAGAGVEVVEKALSLV 324
Query: 234 EETIVA 239
+ + A
Sbjct: 325 ADKVTA 330
>gi|114320734|ref|YP_742417.1| tRNA-dihydrouridine synthase A [Alkalilimnicola ehrlichii MLHE-1]
gi|114227128|gb|ABI56927.1| tRNA-U16,U17-dihydrouridine synthase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 343
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 131/242 (54%), Gaps = 8/242 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM DP V + ++ +A +T +PV+VK RIGVD DSY+ L
Sbjct: 105 NVGCPSDRVQA-GAFGACLMADPGRVADCVAAMAESTRLPVTVKHRIGVDHLDSYDHLTG 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V++ + R F +H+RKA L G+SP ENR +PPL Y Y L RDFP L LNGGI
Sbjct: 164 FVDQVAA-AGCRTFYVHARKAWLQGLSPKENREVPPLDYGRVYRLKRDFPALEVILNGGI 222
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGL-TRRQVVEKYQIYG 181
+ + L +G MVGR AY NPW L D A++GA +G+ R V + Y
Sbjct: 223 TRTETLLETLDRGLDGAMVGREAYTNPW-ALAGWDRALFGAAGAGVPDRHAAVRAFLPYV 281
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
+ L G R ++ + + +L F+ PG ++R +E+ + +P
Sbjct: 282 ETELA--GGAR--LQHLARHILGLFNGCPGGRRWRRHISEQAHRSGAGPEVIEQALALVP 337
Query: 242 DS 243
++
Sbjct: 338 EA 339
>gi|432409561|ref|ZP_19652251.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE39]
gi|432493381|ref|ZP_19735206.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE214]
gi|430939926|gb|ELC60132.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE39]
gi|431030101|gb|ELD43122.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE214]
Length = 345
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|168760895|ref|ZP_02785902.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4501]
gi|170682797|ref|YP_001746438.1| tRNA-dihydrouridine synthase A [Escherichia coli SMS-3-5]
gi|191167463|ref|ZP_03029277.1| tRNA-dihydrouridine synthase A [Escherichia coli B7A]
gi|209921533|ref|YP_002295617.1| tRNA-dihydrouridine synthase A [Escherichia coli SE11]
gi|217325395|ref|ZP_03441479.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14588]
gi|301019187|ref|ZP_07183385.1| tRNA dihydrouridine synthase A [Escherichia coli MS 196-1]
gi|386698928|ref|YP_006162765.1| tRNA-dihydrouridine synthase A [Escherichia coli KO11FL]
gi|386711998|ref|YP_006175719.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|387509503|ref|YP_006161759.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
RM12579]
gi|407467057|ref|YP_006786501.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407484221|ref|YP_006781371.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2011C-3493]
gi|410484767|ref|YP_006772313.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|416308837|ref|ZP_11655290.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1044]
gi|416343439|ref|ZP_11677443.1| tRNA dihydrouridine synthase A [Escherichia coli EC4100B]
gi|416813155|ref|ZP_11891054.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
3256-97]
gi|416823667|ref|ZP_11895656.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str. USDA
5905]
gi|417149502|ref|ZP_11989593.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2264]
gi|417157170|ref|ZP_11994794.1| tRNA dihydrouridine synthase A [Escherichia coli 96.0497]
gi|417167417|ref|ZP_12000303.1| tRNA dihydrouridine synthase A [Escherichia coli 99.0741]
gi|417173676|ref|ZP_12003472.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2608]
gi|417279832|ref|ZP_12067137.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2303]
gi|417293632|ref|ZP_12080911.1| tRNA dihydrouridine synthase A [Escherichia coli B41]
gi|417584457|ref|ZP_12235241.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_C165-02]
gi|417620745|ref|ZP_12271141.1| tRNA-dihydrouridine synthase A [Escherichia coli G58-1]
gi|417637011|ref|ZP_12287212.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_S1191]
gi|417807749|ref|ZP_12454675.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
LB226692]
gi|417835490|ref|ZP_12481929.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
01-09591]
gi|417867571|ref|ZP_12512607.1| hypothetical protein C22711_4498 [Escherichia coli O104:H4 str.
C227-11]
gi|417944826|ref|ZP_12588065.1| tRNA-dihydrouridine synthase A [Escherichia coli XH140A]
gi|417977734|ref|ZP_12618514.1| tRNA-dihydrouridine synthase A [Escherichia coli XH001]
gi|418270660|ref|ZP_12888421.1| tRNA-dihydrouridine synthase A [Shigella sonnei str. Moseley]
gi|418305679|ref|ZP_12917473.1| tRNA-dihydrouridine synthase A [Escherichia coli UMNF18]
gi|418943089|ref|ZP_13496313.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H43 str. T22]
gi|419048150|ref|ZP_13595076.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3A]
gi|419059981|ref|ZP_13606775.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3C]
gi|419123414|ref|ZP_13668349.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5B]
gi|419139483|ref|ZP_13684267.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC5E]
gi|419145169|ref|ZP_13689890.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6A]
gi|419161932|ref|ZP_13706418.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6D]
gi|419167022|ref|ZP_13711464.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6E]
gi|419173038|ref|ZP_13716904.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7A]
gi|419183613|ref|ZP_13727193.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7C]
gi|419189212|ref|ZP_13732709.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7D]
gi|419347900|ref|ZP_13889260.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13A]
gi|419394384|ref|ZP_13935175.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15A]
gi|419919489|ref|ZP_14437641.1| tRNA-dihydrouridine synthase A [Escherichia coli KD2]
gi|419925921|ref|ZP_14443740.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-15]
gi|419929982|ref|ZP_14447646.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-1]
gi|419935807|ref|ZP_14452875.1| tRNA-dihydrouridine synthase A [Escherichia coli 576-1]
gi|419938219|ref|ZP_14455059.1| tRNA-dihydrouridine synthase A [Escherichia coli 75]
gi|419950991|ref|ZP_14467191.1| tRNA-dihydrouridine synthase A [Escherichia coli CUMT8]
gi|422761367|ref|ZP_16815125.1| tRNA dihydrouridine synthase A [Escherichia coli E1167]
gi|422772606|ref|ZP_16826293.1| tRNA dihydrouridine synthase A [Escherichia coli E482]
gi|424458775|ref|ZP_17909846.1| tRNA-dihydrouridine synthase [Escherichia coli PA33]
gi|424478022|ref|ZP_17927315.1| tRNA-dihydrouridine synthase [Escherichia coli PA42]
gi|425189406|ref|ZP_18586655.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1997]
gi|425431515|ref|ZP_18812101.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1304]
gi|428962046|ref|ZP_19033301.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
89.0511]
gi|428980803|ref|ZP_19050585.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.2281]
gi|428992705|ref|ZP_19061671.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0056]
gi|429023447|ref|ZP_19089939.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0428]
gi|429047475|ref|ZP_19112165.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0107]
gi|429829329|ref|ZP_19360300.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0109]
gi|170520515|gb|ACB18693.1| tRNA-dihydrouridine synthase A [Escherichia coli SMS-3-5]
gi|189368570|gb|EDU86986.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4501]
gi|190902505|gb|EDV62240.1| tRNA-dihydrouridine synthase A [Escherichia coli B7A]
gi|209914792|dbj|BAG79866.1| conserved hypothetical protein [Escherichia coli SE11]
gi|217321616|gb|EEC30040.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14588]
gi|299882344|gb|EFI90555.1| tRNA dihydrouridine synthase A [Escherichia coli MS 196-1]
gi|320200820|gb|EFW75406.1| tRNA dihydrouridine synthase A [Escherichia coli EC4100B]
gi|320654888|gb|EFX22849.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320660736|gb|EFX28193.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str. USDA
5905]
gi|323940232|gb|EGB36425.1| tRNA dihydrouridine synthase A [Escherichia coli E482]
gi|324118621|gb|EGC12513.1| tRNA dihydrouridine synthase A [Escherichia coli E1167]
gi|326346520|gb|EGD70254.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1044]
gi|339417777|gb|AEJ59449.1| tRNA-dihydrouridine synthase A [Escherichia coli UMNF18]
gi|340732070|gb|EGR61209.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
01-09591]
gi|340737645|gb|EGR71900.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
LB226692]
gi|341920860|gb|EGT70465.1| hypothetical protein C22711_4498 [Escherichia coli O104:H4 str.
C227-11]
gi|342363423|gb|EGU27531.1| tRNA-dihydrouridine synthase A [Escherichia coli XH140A]
gi|344192596|gb|EGV46686.1| tRNA-dihydrouridine synthase A [Escherichia coli XH001]
gi|345342640|gb|EGW75032.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_C165-02]
gi|345368410|gb|EGX00408.1| tRNA-dihydrouridine synthase A [Escherichia coli G58-1]
gi|345384293|gb|EGX14160.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_S1191]
gi|374361497|gb|AEZ43204.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
RM12579]
gi|375321596|gb|EHS67417.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H43 str. T22]
gi|377887894|gb|EHU52368.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3A]
gi|377901048|gb|EHU65371.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3C]
gi|377960668|gb|EHV24147.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5B]
gi|377978281|gb|EHV41560.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC5E]
gi|377988030|gb|EHV51211.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6A]
gi|378003044|gb|EHV66090.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6D]
gi|378005322|gb|EHV68326.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6E]
gi|378008943|gb|EHV71901.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7A]
gi|378020383|gb|EHV83129.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7C]
gi|378022948|gb|EHV85629.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7D]
gi|378181512|gb|EHX42182.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13A]
gi|378232283|gb|EHX92384.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15A]
gi|383390455|gb|AFH15413.1| tRNA-dihydrouridine synthase A [Escherichia coli KO11FL]
gi|383407690|gb|AFH13933.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|386161723|gb|EIH23526.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2264]
gi|386165920|gb|EIH32440.1| tRNA dihydrouridine synthase A [Escherichia coli 96.0497]
gi|386171539|gb|EIH43583.1| tRNA dihydrouridine synthase A [Escherichia coli 99.0741]
gi|386176368|gb|EIH53847.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2608]
gi|386237548|gb|EII74493.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2303]
gi|386251820|gb|EIJ01512.1| tRNA dihydrouridine synthase A [Escherichia coli B41]
gi|388385029|gb|EIL46734.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-15]
gi|388387683|gb|EIL49293.1| tRNA-dihydrouridine synthase A [Escherichia coli KD2]
gi|388402536|gb|EIL63108.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-1]
gi|388403648|gb|EIL64152.1| tRNA-dihydrouridine synthase A [Escherichia coli 576-1]
gi|388410787|gb|EIL70990.1| tRNA-dihydrouridine synthase A [Escherichia coli 75]
gi|388415638|gb|EIL75560.1| tRNA-dihydrouridine synthase A [Escherichia coli CUMT8]
gi|390740474|gb|EIO11601.1| tRNA-dihydrouridine synthase [Escherichia coli PA33]
gi|390764183|gb|EIO33397.1| tRNA-dihydrouridine synthase [Escherichia coli PA42]
gi|397894258|gb|EJL10705.1| tRNA-dihydrouridine synthase A [Shigella sonnei str. Moseley]
gi|406779929|gb|AFS59353.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407056518|gb|AFS76569.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2011C-3493]
gi|407063092|gb|AFS84139.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408100365|gb|EKH32871.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1997]
gi|408341112|gb|EKJ55583.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1304]
gi|427200589|gb|EKV71002.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
89.0511]
gi|427220916|gb|EKV89803.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.2281]
gi|427237122|gb|EKW04666.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0056]
gi|427272745|gb|EKW37470.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0428]
gi|427295400|gb|EKW58508.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0107]
gi|429250232|gb|EKY34897.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0109]
Length = 339
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 105 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 164 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 224 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 281
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 282 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 312
>gi|432551644|ref|ZP_19788379.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE47]
gi|431087965|gb|ELD93877.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE47]
Length = 345
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|261210364|ref|ZP_05924658.1| tRNA-dihydrouridine synthase [Vibrio sp. RC341]
gi|260840422|gb|EEX66988.1| tRNA-dihydrouridine synthase [Vibrio sp. RC341]
Length = 335
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E ++ + + ++PV+VK RIG+DD DSY L
Sbjct: 98 NVGCPSDRVQ-NGRFGACLMAEPELVAECVAAMRSVVDIPVTVKTRIGIDDQDSYEFLTQ 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 157 FISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYSRAYQIKRDFPHLTIAVNGGV 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQ+P Y L VD I+ + R QV+ + Y +
Sbjct: 217 KTLEEAKLHLQH-LDGVMIGREAYQSP-YLLAEVDQQIFELDTPVKKRSQVIHEMLPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 275 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKQGAGLEVVEQALAKIP 329
>gi|157157144|ref|YP_001465549.1| tRNA-dihydrouridine synthase A [Escherichia coli E24377A]
gi|157163519|ref|YP_001460837.1| tRNA-dihydrouridine synthase A [Escherichia coli HS]
gi|417642085|ref|ZP_12292207.1| tRNA-dihydrouridine synthase A [Escherichia coli TX1999]
gi|157069199|gb|ABV08454.1| tRNA-dihydrouridine synthase A [Escherichia coli HS]
gi|157079174|gb|ABV18882.1| tRNA-dihydrouridine synthase A [Escherichia coli E24377A]
gi|345389602|gb|EGX19407.1| tRNA-dihydrouridine synthase A [Escherichia coli TX1999]
Length = 347
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 113 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 171
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 172 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 231
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 232 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 289
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 290 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 320
>gi|434387108|ref|YP_007097719.1| tRNA dihydrouridine synthase A [Chamaesiphon minutus PCC 6605]
gi|428018098|gb|AFY94192.1| tRNA dihydrouridine synthase A [Chamaesiphon minutus PCC 6605]
Length = 311
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 126/215 (58%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LML P+ V E ++ + T +PV++K RIGVD+ DSY L
Sbjct: 80 NVGCPSSRVQ-NGNFGACLMLQPERVAECIAAMIDATKIPVTIKHRIGVDEVDSYEDLVK 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS R F IH+RKA L G+SP ENR IPPL+YE + L ++FP L+ +NGG
Sbjct: 139 FVSIVSQTGCQR-FSIHARKAWLQGLSPKENREIPPLRYEDVHRLKQEFPHLSIEINGGF 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ +++V L+ VM+GRA Y NP Y L +VD IYG + +R ++V Y
Sbjct: 198 SNLEQVQTQLQI-VDAVMIGRAIYDNP-YLLANVDREIYGEDTLPPSRDRIVTNMLSY-- 253
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + + + +L FH +PG+ ++KR
Sbjct: 254 --IEEWTSKGLKLNSITRHMLQLFHGQPGSRIWKR 286
>gi|145698340|ref|NP_418473.2| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
MG1655]
gi|238903158|ref|YP_002928954.1| tRNA-dihydrouridine synthase A [Escherichia coli BW2952]
gi|293402687|ref|ZP_06646784.1| tRNA dihydrouridine synthase A [Escherichia coli FVEC1412]
gi|293407781|ref|ZP_06651621.1| tRNA-dihydrouridine synthase A [Escherichia coli B354]
gi|293476353|ref|ZP_06664761.1| tRNA-dihydrouridine synthase A [Escherichia coli B088]
gi|298378215|ref|ZP_06988099.1| tRNA-dihydrouridine synthase A [Escherichia coli FVEC1302]
gi|383181363|ref|YP_005459368.1| tRNA-dihydrouridine synthase A [Shigella sonnei 53G]
gi|387609842|ref|YP_006098698.1| tRNA-dihydrouridine synthase A [Escherichia coli 042]
gi|419872880|ref|ZP_14394895.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
CVM9450]
gi|444961024|ref|ZP_21278826.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1753]
gi|444988293|ref|ZP_21305054.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA11]
gi|450229414|ref|ZP_21897771.1| tRNA-dihydrouridine synthase A [Escherichia coli O08]
gi|450254166|ref|ZP_21902519.1| tRNA-dihydrouridine synthase A [Escherichia coli S17]
gi|3183570|sp|P32695.3|DUSA_ECOLI RecName: Full=tRNA-dihydrouridine synthase A
gi|38604936|sp|Q8X5V6.2|DUSA_ECO57 RecName: Full=tRNA-dihydrouridine synthase A
gi|145693211|gb|AAC77019.2| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
MG1655]
gi|238863713|gb|ACR65711.1| tRNA-dihydrouridine synthase A [Escherichia coli BW2952]
gi|284924142|emb|CBG37241.1| tRNA-dihydrouridine synthase A [Escherichia coli 042]
gi|291320806|gb|EFE60248.1| tRNA-dihydrouridine synthase A [Escherichia coli B088]
gi|291429602|gb|EFF02616.1| tRNA dihydrouridine synthase A [Escherichia coli FVEC1412]
gi|291472032|gb|EFF14514.1| tRNA-dihydrouridine synthase A [Escherichia coli B354]
gi|298280549|gb|EFI22050.1| tRNA-dihydrouridine synthase A [Escherichia coli FVEC1302]
gi|388333035|gb|EIK99678.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
CVM9450]
gi|444568211|gb|ELV44901.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1753]
gi|444588723|gb|ELV64087.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA11]
gi|449313057|gb|EMD03287.1| tRNA-dihydrouridine synthase A [Escherichia coli O08]
gi|449313516|gb|EMD03722.1| tRNA-dihydrouridine synthase A [Escherichia coli S17]
Length = 330
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 155 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 215 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 272
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 273 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 303
>gi|416779333|ref|ZP_11876338.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
G5101]
gi|320638805|gb|EFX08451.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
G5101]
Length = 339
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 105 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 164 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 224 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 281
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 282 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 312
>gi|372269222|ref|ZP_09505270.1| tRNA-dihydrouridine synthase A [Alteromonas sp. S89]
Length = 311
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 126/215 (58%), Gaps = 9/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V E + + ++PV+VK RIG+DD + Y L
Sbjct: 79 NCGCPSDRVK-KGRFGACLMAEPDLVAECLGAMREAVSIPVTVKHRIGIDDMEDYPGLTR 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + + + FI+H+RKA LNG+SP ENR IPPLKY+ Y L +D+P+L LNGGI
Sbjct: 138 FV-EAQARAGITTFIVHARKAWLNGLSPKENREIPPLKYDMVYQLKKDYPELEIVLNGGI 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
N+++E L+ VM+GRAAYQ P L VD A++G G T QVV++ Y +
Sbjct: 197 NSIEECQHHLQL-LDGVMLGRAAYQTP-ALLADVDAALFGG-EPGPTPAQVVQQMLPYIE 253
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L T G H++ + + ++ F PG F+R
Sbjct: 254 QEL-TKGQ---HLKHITRHMMGLFQGVPGARRFRR 284
>gi|422972569|ref|ZP_16975396.1| tRNA-dihydrouridine synthase A [Escherichia coli TA124]
gi|371597806|gb|EHN86625.1| tRNA-dihydrouridine synthase A [Escherichia coli TA124]
Length = 345
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|415797083|ref|ZP_11497925.1| tRNA-dihydrouridine synthase A [Escherichia coli E128010]
gi|323162189|gb|EFZ48052.1| tRNA-dihydrouridine synthase A [Escherichia coli E128010]
Length = 330
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 155 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 215 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 272
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 273 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 303
>gi|415785370|ref|ZP_11492920.1| tRNA-dihydrouridine synthase A [Escherichia coli EPECa14]
gi|323155612|gb|EFZ41787.1| tRNA-dihydrouridine synthase A [Escherichia coli EPECa14]
Length = 347
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 113 NVGCPSDRVQ-NGMFGACLMGNTQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 171
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 172 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 231
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 232 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 289
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 290 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 320
>gi|331650053|ref|ZP_08351126.1| tRNA-dihydrouridine synthase A [Escherichia coli M605]
gi|419863045|ref|ZP_14385606.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H25 str.
CVM9340]
gi|427807268|ref|ZP_18974335.1| hypothetical protein BN16_00701 [Escherichia coli chi7122]
gi|432394795|ref|ZP_19637605.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE21]
gi|432614135|ref|ZP_19850284.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE72]
gi|443615558|ref|YP_007379414.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O78]
gi|331040998|gb|EGI13155.1| tRNA-dihydrouridine synthase A [Escherichia coli M605]
gi|388343546|gb|EIL09478.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H25 str.
CVM9340]
gi|412965450|emb|CCK49383.1| hypothetical protein BN16_00701 [Escherichia coli chi7122]
gi|430912545|gb|ELC33718.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE21]
gi|431145456|gb|ELE47106.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE72]
gi|443420066|gb|AGC84970.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O78]
Length = 345
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|417297156|ref|ZP_12084403.1| tRNA dihydrouridine synthase A [Escherichia coli 900105 (10e)]
gi|419218451|ref|ZP_13761435.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8D]
gi|419257779|ref|ZP_13800272.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10A]
gi|420112425|ref|ZP_14622224.1| hypothetical protein ECO10021_28435 [Escherichia coli O26:H11 str.
CVM10021]
gi|420122253|ref|ZP_14631241.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10030]
gi|420126332|ref|ZP_14635068.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10224]
gi|420130440|ref|ZP_14638932.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9952]
gi|424751353|ref|ZP_18179383.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CFSAN001629]
gi|378056767|gb|EHW19006.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8D]
gi|378095794|gb|EHW57577.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10A]
gi|386260600|gb|EIJ16074.1| tRNA dihydrouridine synthase A [Escherichia coli 900105 (10e)]
gi|394392213|gb|EJE69002.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10224]
gi|394414595|gb|EJE88536.1| hypothetical protein ECO10021_28435 [Escherichia coli O26:H11 str.
CVM10021]
gi|394422403|gb|EJE95764.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10030]
gi|394433682|gb|EJF05689.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9952]
gi|421939583|gb|EKT97098.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CFSAN001629]
Length = 339
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 105 NVGCPSDRVQ-NGMFGACLMGNTQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 164 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 224 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 281
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 282 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 312
>gi|148827810|ref|YP_001292563.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae PittGG]
gi|148719052|gb|ABR00180.1| hypothetical protein CGSHiGG_06425 [Haemophilus influenzae PittGG]
Length = 327
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 132/239 (55%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 155 FIEKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYTRVYQLKRDFPHLTIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LG +D A++ + +T + V+ Y +
Sbjct: 214 KTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAYEAVQSMLPYIE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 272 QQL----SQGIHLNHIVRHMLGAFQNCKGARQWRRYLSENAFKQGAGIEVVETALSFVE 326
>gi|366158984|ref|ZP_09458846.1| tRNA-dihydrouridine synthase A [Escherichia sp. TW09308]
gi|432374629|ref|ZP_19617655.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE11]
gi|430893024|gb|ELC15372.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE11]
Length = 331
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 216 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 274 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 304
>gi|432916245|ref|ZP_20121217.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE173]
gi|432923572|ref|ZP_20126126.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE175]
gi|431450457|gb|ELH30943.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE173]
gi|431451570|gb|ELH32042.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE175]
Length = 345
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|420283680|ref|ZP_14785905.1| tRNA-dihydrouridine synthase [Escherichia coli TW06591]
gi|420301698|ref|ZP_14803733.1| tRNA-dihydrouridine synthase [Escherichia coli TW10119]
gi|444977557|ref|ZP_21294612.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1805]
gi|390778347|gb|EIO46105.1| tRNA-dihydrouridine synthase [Escherichia coli TW06591]
gi|390820291|gb|EIO86597.1| tRNA-dihydrouridine synthase [Escherichia coli TW10119]
gi|444587450|gb|ELV62901.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1805]
Length = 345
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|425320239|ref|ZP_18708993.1| tRNA-dihydrouridine synthase [Escherichia coli EC1736]
gi|408234364|gb|EKI57389.1| tRNA-dihydrouridine synthase [Escherichia coli EC1736]
Length = 331
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 216 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 274 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 304
>gi|156972389|ref|YP_001443296.1| tRNA-dihydrouridine synthase A [Vibrio harveyi ATCC BAA-1116]
gi|156523983|gb|ABU69069.1| hypothetical protein VIBHAR_00009 [Vibrio harveyi ATCC BAA-1116]
Length = 300
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 131/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + +VPV+VK RIG+DD DSY L D
Sbjct: 64 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDVVDVPVTVKTRIGIDDQDSYEFLTD 122
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 123 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLTIAINGGV 182
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++E L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +
Sbjct: 183 KLLEEAKEHLQY-LDGVMIGREAYQSP-YLLASVDQELFGSNTPVKKRSEIVEEMYPYIE 240
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A L ++ + + +L F S PG ++R + L++ + IP
Sbjct: 241 AQLA----KGAYLGHITRHMLGLFQSMPGARQWRRHISENAHKPGSGLEVLQDALAKIPK 296
Query: 243 SV 244
+
Sbjct: 297 EL 298
>gi|388598475|ref|ZP_10156871.1| tRNA-dihydrouridine synthase A [Vibrio campbellii DS40M4]
Length = 326
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 131/240 (54%), Gaps = 7/240 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L DF+
Sbjct: 92 GCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDVVDIPVTVKTRIGIDDQDSYEFLTDFV 150
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+ +
Sbjct: 151 SIVSERGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLTIAINGGVKS 210
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +A
Sbjct: 211 LEEAKEHLQY-LDGVMIGREAYQSP-YLLASVDQELFGSNTPVKKRSEIVEEMYPYIEAQ 268
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSV 244
L ++ + + +L F S PG ++R + L++ + IP +
Sbjct: 269 LA----KGAYLGHITRHMLGLFQSMPGARQWRRHISENAHKPGSGLEVLQDALAKIPKEL 324
>gi|308125855|ref|ZP_07663540.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus K5030]
gi|433658796|ref|YP_007276175.1| tRNA dihydrouridine synthase A [Vibrio parahaemolyticus BB22OP]
gi|308113305|gb|EFO50845.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus K5030]
gi|432509484|gb|AGB11001.1| tRNA dihydrouridine synthase A [Vibrio parahaemolyticus BB22OP]
Length = 315
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 132/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + +VPV+VK RIG+DD DSY L D
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKEVVDVPVTVKTRIGIDDQDSYEFLTD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 138 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKQDFSHLTIAINGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +
Sbjct: 198 KSLEEAKVHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSNAPVKKRSEIVEEMYPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A L ++ + + +L F + PG ++R + L++ + IP
Sbjct: 256 AQLA----KGAYLGHITRHMLGLFQNMPGARQWRRHISENAHKPGSGLEVLQDALAKIPK 311
Query: 243 SV 244
+
Sbjct: 312 EL 313
>gi|15834285|ref|NP_313058.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
Sakai]
gi|74314543|ref|YP_312962.1| tRNA-dihydrouridine synthase A [Shigella sonnei Ss046]
gi|170083506|ref|YP_001732826.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
DH10B]
gi|193063063|ref|ZP_03044155.1| tRNA-dihydrouridine synthase A [Escherichia coli E22]
gi|218556606|ref|YP_002389520.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI1]
gi|218697757|ref|YP_002405424.1| tRNA-dihydrouridine synthase A [Escherichia coli 55989]
gi|218707670|ref|YP_002415189.1| tRNA -dihydrouridine synthase A [Escherichia coli UMN026]
gi|254163985|ref|YP_003047093.1| tRNA-dihydrouridine synthase A [Escherichia coli B str. REL606]
gi|260846843|ref|YP_003224621.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
12009]
gi|291285465|ref|YP_003502283.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
CB9615]
gi|300817967|ref|ZP_07098180.1| tRNA dihydrouridine synthase A [Escherichia coli MS 107-1]
gi|300823590|ref|ZP_07103718.1| tRNA dihydrouridine synthase A [Escherichia coli MS 119-7]
gi|300899835|ref|ZP_07118049.1| tRNA dihydrouridine synthase A [Escherichia coli MS 198-1]
gi|300906360|ref|ZP_07124058.1| tRNA dihydrouridine synthase A [Escherichia coli MS 84-1]
gi|300917303|ref|ZP_07133976.1| tRNA dihydrouridine synthase A [Escherichia coli MS 115-1]
gi|300924312|ref|ZP_07140291.1| tRNA dihydrouridine synthase A [Escherichia coli MS 182-1]
gi|300938186|ref|ZP_07152956.1| tRNA dihydrouridine synthase A [Escherichia coli MS 21-1]
gi|300946621|ref|ZP_07160880.1| tRNA dihydrouridine synthase A [Escherichia coli MS 116-1]
gi|300957541|ref|ZP_07169748.1| tRNA dihydrouridine synthase A [Escherichia coli MS 175-1]
gi|301021575|ref|ZP_07185575.1| tRNA dihydrouridine synthase A [Escherichia coli MS 69-1]
gi|301302728|ref|ZP_07208857.1| tRNA dihydrouridine synthase A [Escherichia coli MS 124-1]
gi|301330578|ref|ZP_07223186.1| tRNA dihydrouridine synthase A [Escherichia coli MS 78-1]
gi|301645037|ref|ZP_07245000.1| tRNA dihydrouridine synthase A [Escherichia coli MS 146-1]
gi|307312109|ref|ZP_07591746.1| TIM-barrel protein, yjbN family [Escherichia coli W]
gi|309795855|ref|ZP_07690269.1| tRNA dihydrouridine synthase A [Escherichia coli MS 145-7]
gi|331644790|ref|ZP_08345907.1| tRNA-dihydrouridine synthase A [Escherichia coli H736]
gi|331665718|ref|ZP_08366612.1| tRNA-dihydrouridine synthase A [Escherichia coli TA143]
gi|331670912|ref|ZP_08371746.1| tRNA-dihydrouridine synthase A [Escherichia coli TA271]
gi|331680179|ref|ZP_08380838.1| tRNA-dihydrouridine synthase A [Escherichia coli H591]
gi|378715002|ref|YP_005279895.1| yjbN family TIM-barrel protein [Escherichia coli KO11FL]
gi|386278658|ref|ZP_10056352.1| tRNA-dihydrouridine synthase A [Escherichia sp. 4_1_40B]
gi|386597433|ref|YP_006093833.1| yjbN family TIM-barrel protein [Escherichia coli DH1]
gi|386611456|ref|YP_006126942.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|387623679|ref|YP_006131307.1| tRNA-dihydrouridine synthase A [Escherichia coli DH1]
gi|387885273|ref|YP_006315575.1| tRNA-dihydrouridine synthase A [Escherichia coli Xuzhou21]
gi|388479998|ref|YP_492192.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
W3110]
gi|404372969|ref|ZP_10978244.1| tRNA-dihydrouridine synthase A [Escherichia sp. 1_1_43]
gi|414578913|ref|ZP_11436071.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3233-85]
gi|415775768|ref|ZP_11487452.1| tRNA-dihydrouridine synthase A [Escherichia coli 3431]
gi|415831878|ref|ZP_11517429.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1357]
gi|415851830|ref|ZP_11528400.1| tRNA-dihydrouridine synthase A [Shigella sonnei 53G]
gi|415864649|ref|ZP_11537673.1| tRNA dihydrouridine synthase A [Escherichia coli MS 85-1]
gi|415874338|ref|ZP_11541392.1| tRNA-dihydrouridine synthase A [Escherichia coli MS 79-10]
gi|417127511|ref|ZP_11974951.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0246]
gi|417132710|ref|ZP_11977495.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0588]
gi|417141753|ref|ZP_11984605.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0259]
gi|417187164|ref|ZP_12012021.1| tRNA dihydrouridine synthase A [Escherichia coli 93.0624]
gi|417238755|ref|ZP_12036179.1| tRNA dihydrouridine synthase A [Escherichia coli 9.0111]
gi|417249758|ref|ZP_12041542.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0967]
gi|417261060|ref|ZP_12048553.1| tRNA dihydrouridine synthase A [Escherichia coli 2.3916]
gi|417269156|ref|ZP_12056516.1| tRNA dihydrouridine synthase A [Escherichia coli 3.3884]
gi|417273712|ref|ZP_12061057.1| tRNA dihydrouridine synthase A [Escherichia coli 2.4168]
gi|417310661|ref|ZP_12097471.1| tRNA-dihydrouridine synthase A [Escherichia coli PCN033]
gi|417583720|ref|ZP_12234514.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_B2F1]
gi|417599494|ref|ZP_12250112.1| tRNA-dihydrouridine synthase A [Escherichia coli 3030-1]
gi|417610830|ref|ZP_12261315.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_DG131-3]
gi|417615717|ref|ZP_12266162.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_EH250]
gi|417631546|ref|ZP_12281774.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_MHI813]
gi|418960069|ref|ZP_13511964.1| TIM-barrel protein, yjbN family [Escherichia coli J53]
gi|419053914|ref|ZP_13600777.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3B]
gi|419065341|ref|ZP_13612045.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3D]
gi|419112114|ref|ZP_13657159.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4F]
gi|419117635|ref|ZP_13662637.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5A]
gi|419129077|ref|ZP_13673940.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5C]
gi|419151060|ref|ZP_13695702.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6B]
gi|419156579|ref|ZP_13701128.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6C]
gi|419194344|ref|ZP_13737778.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7E]
gi|419280846|ref|ZP_13823079.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10E]
gi|419292283|ref|ZP_13834361.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11A]
gi|419303099|ref|ZP_13845085.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11C]
gi|419309143|ref|ZP_13851027.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11D]
gi|419314102|ref|ZP_13855954.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11E]
gi|419352352|ref|ZP_13893673.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13B]
gi|419357838|ref|ZP_13899077.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13C]
gi|419362797|ref|ZP_13903997.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13D]
gi|419367977|ref|ZP_13909116.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13E]
gi|419372703|ref|ZP_13913802.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC14A]
gi|419383646|ref|ZP_13924578.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14C]
gi|419388902|ref|ZP_13929756.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14D]
gi|419399518|ref|ZP_13940272.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15B]
gi|419404760|ref|ZP_13945471.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15C]
gi|419409921|ref|ZP_13950600.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15D]
gi|419415486|ref|ZP_13956112.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15E]
gi|419805709|ref|ZP_14330838.1| TIM-barrel protein, yjbN family [Escherichia coli AI27]
gi|420361454|ref|ZP_14862391.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3226-85]
gi|420366102|ref|ZP_14866955.1| tRNA-dihydrouridine synthase A [Shigella sonnei 4822-66]
gi|420388436|ref|ZP_14887762.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
EPECa12]
gi|420394208|ref|ZP_14893445.1| tRNA-dihydrouridine synthase A [Escherichia coli EPEC C342-62]
gi|421820906|ref|ZP_16256383.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0821]
gi|421827916|ref|ZP_16263248.1| tRNA-dihydrouridine synthase [Escherichia coli PA7]
gi|422331517|ref|ZP_16412533.1| tRNA-dihydrouridine synthase A [Escherichia coli 4_1_47FAA]
gi|422354931|ref|ZP_16435656.1| tRNA dihydrouridine synthase A [Escherichia coli MS 117-3]
gi|422776251|ref|ZP_16829905.1| tRNA dihydrouridine synthase A [Escherichia coli H120]
gi|422958043|ref|ZP_16970257.1| tRNA-dihydrouridine synthase A [Escherichia coli H494]
gi|422990314|ref|ZP_16981086.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C227-11]
gi|422997210|ref|ZP_16987972.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C236-11]
gi|423002306|ref|ZP_16993057.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
09-7901]
gi|423005962|ref|ZP_16996707.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
04-8351]
gi|423012525|ref|ZP_17003255.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-3677]
gi|423021756|ref|ZP_17012460.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4404]
gi|423026910|ref|ZP_17017604.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4522]
gi|423032739|ref|ZP_17023425.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4623]
gi|423035615|ref|ZP_17026291.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423040734|ref|ZP_17031402.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423047420|ref|ZP_17038078.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423055958|ref|ZP_17044764.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423057963|ref|ZP_17046761.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423703599|ref|ZP_17678031.1| tRNA-dihydrouridine synthase A [Escherichia coli H730]
gi|423708364|ref|ZP_17682744.1| tRNA-dihydrouridine synthase A [Escherichia coli B799]
gi|424080404|ref|ZP_17817337.1| tRNA-dihydrouridine synthase [Escherichia coli FDA505]
gi|424112734|ref|ZP_17846938.1| tRNA-dihydrouridine synthase [Escherichia coli 93-001]
gi|424124866|ref|ZP_17858141.1| tRNA-dihydrouridine synthase [Escherichia coli PA5]
gi|424452613|ref|ZP_17904228.1| tRNA-dihydrouridine synthase [Escherichia coli PA32]
gi|424528995|ref|ZP_17972685.1| tRNA-dihydrouridine synthase [Escherichia coli EC4421]
gi|424535138|ref|ZP_17978465.1| tRNA-dihydrouridine synthase [Escherichia coli EC4422]
gi|425100876|ref|ZP_18503591.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4870]
gi|425112954|ref|ZP_18514853.1| tRNA-dihydrouridine synthase [Escherichia coli 6.0172]
gi|425117681|ref|ZP_18519448.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0566]
gi|425122396|ref|ZP_18524060.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0569]
gi|425128923|ref|ZP_18530069.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0586]
gi|425159409|ref|ZP_18558619.1| tRNA-dihydrouridine synthase [Escherichia coli FDA506]
gi|425171003|ref|ZP_18569455.1| tRNA-dihydrouridine synthase [Escherichia coli FDA507]
gi|425177043|ref|ZP_18575140.1| tRNA-dihydrouridine synthase [Escherichia coli FDA504]
gi|425214787|ref|ZP_18610168.1| tRNA-dihydrouridine synthase [Escherichia coli PA4]
gi|425220869|ref|ZP_18615810.1| tRNA-dihydrouridine synthase [Escherichia coli PA23]
gi|425227524|ref|ZP_18621967.1| tRNA-dihydrouridine synthase [Escherichia coli PA49]
gi|425233673|ref|ZP_18627690.1| tRNA-dihydrouridine synthase [Escherichia coli PA45]
gi|425239596|ref|ZP_18633294.1| tRNA-dihydrouridine synthase [Escherichia coli TT12B]
gi|425251985|ref|ZP_18644907.1| tRNA-dihydrouridine synthase [Escherichia coli 5905]
gi|425275402|ref|ZP_18666774.1| tRNA-dihydrouridine synthase [Escherichia coli TW15901]
gi|425285955|ref|ZP_18676961.1| tRNA-dihydrouridine synthase [Escherichia coli TW00353]
gi|425413899|ref|ZP_18795638.1| tRNA-dihydrouridine synthase [Escherichia coli NE098]
gi|425420221|ref|ZP_18801470.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK523]
gi|425425094|ref|ZP_18806232.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1288]
gi|427811850|ref|ZP_18978915.1| hypothetical protein BN17_40231 [Escherichia coli]
gi|428955991|ref|ZP_19027759.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1042]
gi|428986610|ref|ZP_19055976.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0055]
gi|428998598|ref|ZP_19067168.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
94.0618]
gi|429011083|ref|ZP_19078450.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.1288]
gi|429017496|ref|ZP_19084350.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0943]
gi|429029414|ref|ZP_19095364.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0427]
gi|429052887|ref|ZP_19117438.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0003]
gi|429063933|ref|ZP_19127872.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0007]
gi|429081140|ref|ZP_19144260.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0713]
gi|429721797|ref|ZP_19256708.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429773875|ref|ZP_19305884.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02030]
gi|429779060|ref|ZP_19311021.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02033-1]
gi|429782895|ref|ZP_19314815.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02092]
gi|429788288|ref|ZP_19320170.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02093]
gi|429794726|ref|ZP_19326562.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02281]
gi|429800686|ref|ZP_19332470.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02318]
gi|429804299|ref|ZP_19336051.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02913]
gi|429809124|ref|ZP_19340834.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03439]
gi|429814888|ref|ZP_19346553.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-04080]
gi|429820092|ref|ZP_19351716.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03943]
gi|429835802|ref|ZP_19366016.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0010]
gi|429906166|ref|ZP_19372138.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429910300|ref|ZP_19376258.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429916198|ref|ZP_19382141.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429921246|ref|ZP_19387170.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429927051|ref|ZP_19392960.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429930984|ref|ZP_19396881.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429937525|ref|ZP_19403409.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429943203|ref|ZP_19409074.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429945884|ref|ZP_19411742.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429953449|ref|ZP_19419291.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429956792|ref|ZP_19422622.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432351237|ref|ZP_19594554.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE2]
gi|432379291|ref|ZP_19622268.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE12]
gi|432404445|ref|ZP_19647184.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE26]
gi|432428713|ref|ZP_19671188.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE181]
gi|432463456|ref|ZP_19705583.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE204]
gi|432478411|ref|ZP_19720392.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE208]
gi|432479001|ref|ZP_19720968.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE210]
gi|432491879|ref|ZP_19733734.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE213]
gi|432520261|ref|ZP_19757436.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE228]
gi|432531841|ref|ZP_19768857.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE234]
gi|432540429|ref|ZP_19777317.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE235]
gi|432545911|ref|ZP_19782728.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE236]
gi|432551392|ref|ZP_19788135.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE237]
gi|432561499|ref|ZP_19798137.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE51]
gi|432604875|ref|ZP_19841098.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE66]
gi|432624444|ref|ZP_19860452.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE76]
gi|432625219|ref|ZP_19861214.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE77]
gi|432643645|ref|ZP_19879462.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE83]
gi|432658890|ref|ZP_19894560.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE111]
gi|432663768|ref|ZP_19899375.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE116]
gi|432682842|ref|ZP_19918190.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE143]
gi|432683524|ref|ZP_19918853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE156]
gi|432689370|ref|ZP_19924630.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE161]
gi|432702216|ref|ZP_19937350.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE171]
gi|432716681|ref|ZP_19951690.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE9]
gi|432735095|ref|ZP_19969903.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE42]
gi|432752504|ref|ZP_19987078.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE29]
gi|432762956|ref|ZP_19997414.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE48]
gi|432768421|ref|ZP_20002808.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE50]
gi|432772821|ref|ZP_20007129.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE54]
gi|432808295|ref|ZP_20042205.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE91]
gi|432811799|ref|ZP_20045651.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE101]
gi|432817883|ref|ZP_20051610.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE115]
gi|432829663|ref|ZP_20063275.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE135]
gi|432832716|ref|ZP_20066266.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE136]
gi|432837144|ref|ZP_20070644.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE140]
gi|432857506|ref|ZP_20084376.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE146]
gi|432872090|ref|ZP_20091969.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE147]
gi|432882896|ref|ZP_20098516.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE158]
gi|432908878|ref|ZP_20116469.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE190]
gi|432931883|ref|ZP_20131824.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE184]
gi|432943915|ref|ZP_20140578.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE196]
gi|432951533|ref|ZP_20145037.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE197]
gi|432958064|ref|ZP_20149206.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE202]
gi|432965817|ref|ZP_20154737.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE203]
gi|433021308|ref|ZP_20209376.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE105]
gi|433045591|ref|ZP_20233057.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE117]
gi|433050521|ref|ZP_20237831.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE120]
gi|433055680|ref|ZP_20242824.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE122]
gi|433065520|ref|ZP_20252414.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE125]
gi|433070459|ref|ZP_20257212.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE128]
gi|433094450|ref|ZP_20280692.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE138]
gi|433132641|ref|ZP_20318055.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE163]
gi|433137312|ref|ZP_20322629.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE166]
gi|433161209|ref|ZP_20346015.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE177]
gi|433180924|ref|ZP_20365288.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE82]
gi|433196113|ref|ZP_20380070.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE90]
gi|433205807|ref|ZP_20389541.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE95]
gi|442594682|ref|ZP_21012561.1| tRNA dihydrouridine synthase A [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|444966243|ref|ZP_21283783.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1775]
gi|445031633|ref|ZP_21347283.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1781]
gi|445047930|ref|ZP_21363163.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4880]
gi|445053517|ref|ZP_21368513.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0083]
gi|445061494|ref|ZP_21373996.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0670]
gi|13364508|dbj|BAB38454.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|73858020|gb|AAZ90727.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|85676801|dbj|BAE78051.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K12 substr.
W3110]
gi|169891341|gb|ACB05048.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
DH10B]
gi|192931322|gb|EDV83924.1| tRNA-dihydrouridine synthase A [Escherichia coli E22]
gi|218354489|emb|CAV01337.1| tRNA-dihydrouridine synthase A [Escherichia coli 55989]
gi|218363375|emb|CAR01028.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI1]
gi|218434767|emb|CAR15700.1| tRNA-dihydrouridine synthase A [Escherichia coli UMN026]
gi|253975886|gb|ACT41557.1| tRNA-dihydrouridine synthase A [Escherichia coli B str. REL606]
gi|257761990|dbj|BAI33487.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
12009]
gi|260451122|gb|ACX41544.1| TIM-barrel protein, yjbN family [Escherichia coli DH1]
gi|290765338|gb|ADD59299.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
CB9615]
gi|300315715|gb|EFJ65499.1| tRNA dihydrouridine synthase A [Escherichia coli MS 175-1]
gi|300356606|gb|EFJ72476.1| tRNA dihydrouridine synthase A [Escherichia coli MS 198-1]
gi|300397973|gb|EFJ81511.1| tRNA dihydrouridine synthase A [Escherichia coli MS 69-1]
gi|300401808|gb|EFJ85346.1| tRNA dihydrouridine synthase A [Escherichia coli MS 84-1]
gi|300415447|gb|EFJ98757.1| tRNA dihydrouridine synthase A [Escherichia coli MS 115-1]
gi|300419477|gb|EFK02788.1| tRNA dihydrouridine synthase A [Escherichia coli MS 182-1]
gi|300453720|gb|EFK17340.1| tRNA dihydrouridine synthase A [Escherichia coli MS 116-1]
gi|300456844|gb|EFK20337.1| tRNA dihydrouridine synthase A [Escherichia coli MS 21-1]
gi|300523922|gb|EFK44991.1| tRNA dihydrouridine synthase A [Escherichia coli MS 119-7]
gi|300529377|gb|EFK50439.1| tRNA dihydrouridine synthase A [Escherichia coli MS 107-1]
gi|300841948|gb|EFK69708.1| tRNA dihydrouridine synthase A [Escherichia coli MS 124-1]
gi|300843456|gb|EFK71216.1| tRNA dihydrouridine synthase A [Escherichia coli MS 78-1]
gi|301076659|gb|EFK91465.1| tRNA dihydrouridine synthase A [Escherichia coli MS 146-1]
gi|306907916|gb|EFN38417.1| TIM-barrel protein, yjbN family [Escherichia coli W]
gi|308120516|gb|EFO57778.1| tRNA dihydrouridine synthase A [Escherichia coli MS 145-7]
gi|315063373|gb|ADT77700.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|315138603|dbj|BAJ45762.1| tRNA-dihydrouridine synthase A [Escherichia coli DH1]
gi|315254721|gb|EFU34689.1| tRNA dihydrouridine synthase A [Escherichia coli MS 85-1]
gi|315617417|gb|EFU98023.1| tRNA-dihydrouridine synthase A [Escherichia coli 3431]
gi|323164554|gb|EFZ50355.1| tRNA-dihydrouridine synthase A [Shigella sonnei 53G]
gi|323182152|gb|EFZ67562.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1357]
gi|323380563|gb|ADX52831.1| TIM-barrel protein, yjbN family [Escherichia coli KO11FL]
gi|323946182|gb|EGB42216.1| tRNA dihydrouridine synthase A [Escherichia coli H120]
gi|324017108|gb|EGB86327.1| tRNA dihydrouridine synthase A [Escherichia coli MS 117-3]
gi|331035765|gb|EGI08003.1| tRNA-dihydrouridine synthase A [Escherichia coli H736]
gi|331056769|gb|EGI28763.1| tRNA-dihydrouridine synthase A [Escherichia coli TA143]
gi|331061826|gb|EGI33751.1| tRNA-dihydrouridine synthase A [Escherichia coli TA271]
gi|331071642|gb|EGI42978.1| tRNA-dihydrouridine synthase A [Escherichia coli H591]
gi|338767747|gb|EGP22557.1| tRNA-dihydrouridine synthase A [Escherichia coli PCN033]
gi|342930161|gb|EGU98883.1| tRNA-dihydrouridine synthase A [Escherichia coli MS 79-10]
gi|345331951|gb|EGW64409.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_B2F1]
gi|345347312|gb|EGW79624.1| tRNA-dihydrouridine synthase A [Escherichia coli 3030-1]
gi|345352482|gb|EGW84730.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_DG131-3]
gi|345356864|gb|EGW89064.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_EH250]
gi|345368782|gb|EGX00778.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_MHI813]
gi|354856290|gb|EHF16750.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C236-11]
gi|354860856|gb|EHF21297.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
04-8351]
gi|354861381|gb|EHF21821.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C227-11]
gi|354870086|gb|EHF30492.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
09-7901]
gi|354874485|gb|EHF34853.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-3677]
gi|354883727|gb|EHF44042.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4404]
gi|354887989|gb|EHF48252.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4522]
gi|354891673|gb|EHF51899.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4623]
gi|354903374|gb|EHF63476.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354907020|gb|EHF67087.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354908961|gb|EHF68998.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354911087|gb|EHF71093.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C4]
gi|354919640|gb|EHF79582.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C5]
gi|359334159|dbj|BAL40606.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
MDS42]
gi|371596951|gb|EHN85777.1| tRNA-dihydrouridine synthase A [Escherichia coli H494]
gi|373247535|gb|EHP66976.1| tRNA-dihydrouridine synthase A [Escherichia coli 4_1_47FAA]
gi|377888304|gb|EHU52775.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3B]
gi|377904979|gb|EHU69256.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3D]
gi|377952740|gb|EHV16321.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4F]
gi|377956034|gb|EHV19585.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5A]
gi|377968295|gb|EHV31689.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5C]
gi|377987624|gb|EHV50809.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6B]
gi|377991087|gb|EHV54241.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6C]
gi|378033676|gb|EHV96251.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7E]
gi|378122378|gb|EHW83806.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10E]
gi|378123054|gb|EHW84472.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11A]
gi|378143086|gb|EHX04279.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11D]
gi|378145028|gb|EHX06195.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11C]
gi|378153792|gb|EHX14871.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11E]
gi|378194748|gb|EHX55258.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13C]
gi|378194907|gb|EHX55415.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13B]
gi|378196913|gb|EHX57397.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13D]
gi|378207648|gb|EHX68038.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13E]
gi|378211661|gb|EHX71997.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC14A]
gi|378223175|gb|EHX83403.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14C]
gi|378225785|gb|EHX85979.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14D]
gi|378238668|gb|EHX98662.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15B]
gi|378241515|gb|EHY01481.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15C]
gi|378249386|gb|EHY09295.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15D]
gi|378254588|gb|EHY14451.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15E]
gi|384377180|gb|EIE35076.1| TIM-barrel protein, yjbN family [Escherichia coli J53]
gi|384471302|gb|EIE55384.1| TIM-barrel protein, yjbN family [Escherichia coli AI27]
gi|385708038|gb|EIG45058.1| tRNA-dihydrouridine synthase A [Escherichia coli H730]
gi|385708313|gb|EIG45326.1| tRNA-dihydrouridine synthase A [Escherichia coli B799]
gi|386124171|gb|EIG72754.1| tRNA-dihydrouridine synthase A [Escherichia sp. 4_1_40B]
gi|386143977|gb|EIG90444.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0246]
gi|386150564|gb|EIH01853.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0588]
gi|386155656|gb|EIH12007.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0259]
gi|386181655|gb|EIH64416.1| tRNA dihydrouridine synthase A [Escherichia coli 93.0624]
gi|386213292|gb|EII23721.1| tRNA dihydrouridine synthase A [Escherichia coli 9.0111]
gi|386220079|gb|EII36543.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0967]
gi|386225464|gb|EII47794.1| tRNA dihydrouridine synthase A [Escherichia coli 2.3916]
gi|386227961|gb|EII55317.1| tRNA dihydrouridine synthase A [Escherichia coli 3.3884]
gi|386233894|gb|EII65874.1| tRNA dihydrouridine synthase A [Escherichia coli 2.4168]
gi|386798731|gb|AFJ31765.1| tRNA-dihydrouridine synthase A [Escherichia coli Xuzhou21]
gi|390636843|gb|EIN16408.1| tRNA-dihydrouridine synthase [Escherichia coli FDA505]
gi|390656199|gb|EIN34085.1| tRNA-dihydrouridine synthase [Escherichia coli 93-001]
gi|390676800|gb|EIN52879.1| tRNA-dihydrouridine synthase [Escherichia coli PA5]
gi|390736690|gb|EIO08014.1| tRNA-dihydrouridine synthase [Escherichia coli PA32]
gi|390847338|gb|EIP10884.1| tRNA-dihydrouridine synthase [Escherichia coli EC4421]
gi|390857612|gb|EIP20039.1| tRNA-dihydrouridine synthase [Escherichia coli EC4422]
gi|391276753|gb|EIQ35515.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3226-85]
gi|391279919|gb|EIQ38599.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3233-85]
gi|391291273|gb|EIQ49683.1| tRNA-dihydrouridine synthase A [Shigella sonnei 4822-66]
gi|391300720|gb|EIQ58628.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
EPECa12]
gi|391308710|gb|EIQ66400.1| tRNA-dihydrouridine synthase A [Escherichia coli EPEC C342-62]
gi|404293218|gb|EEH72154.2| tRNA-dihydrouridine synthase A [Escherichia sp. 1_1_43]
gi|408073042|gb|EKH07351.1| tRNA-dihydrouridine synthase [Escherichia coli PA7]
gi|408079601|gb|EKH13716.1| tRNA-dihydrouridine synthase [Escherichia coli FDA507]
gi|408087883|gb|EKH21285.1| tRNA-dihydrouridine synthase [Escherichia coli FDA504]
gi|408092649|gb|EKH25834.1| tRNA-dihydrouridine synthase [Escherichia coli FDA506]
gi|408124563|gb|EKH55227.1| tRNA-dihydrouridine synthase [Escherichia coli PA4]
gi|408134422|gb|EKH64253.1| tRNA-dihydrouridine synthase [Escherichia coli PA23]
gi|408135989|gb|EKH65748.1| tRNA-dihydrouridine synthase [Escherichia coli PA49]
gi|408143289|gb|EKH72597.1| tRNA-dihydrouridine synthase [Escherichia coli PA45]
gi|408151617|gb|EKH80104.1| tRNA-dihydrouridine synthase [Escherichia coli TT12B]
gi|408160868|gb|EKH88859.1| tRNA-dihydrouridine synthase [Escherichia coli 5905]
gi|408189214|gb|EKI14964.1| tRNA-dihydrouridine synthase [Escherichia coli TW15901]
gi|408196910|gb|EKI22184.1| tRNA-dihydrouridine synthase [Escherichia coli TW00353]
gi|408322390|gb|EKJ38384.1| tRNA-dihydrouridine synthase [Escherichia coli NE098]
gi|408333436|gb|EKJ48385.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK523]
gi|408340122|gb|EKJ54631.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1288]
gi|408544476|gb|EKK21929.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4870]
gi|408544935|gb|EKK22376.1| tRNA-dihydrouridine synthase [Escherichia coli 6.0172]
gi|408562418|gb|EKK38580.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0566]
gi|408562657|gb|EKK38814.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0586]
gi|408563515|gb|EKK39647.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0569]
gi|408607240|gb|EKK80644.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0821]
gi|412972029|emb|CCJ46699.1| hypothetical protein BN17_40231 [Escherichia coli]
gi|427200763|gb|EKV71175.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1042]
gi|427237348|gb|EKW04891.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0055]
gi|427241671|gb|EKW09095.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
94.0618]
gi|427256764|gb|EKW22915.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.1288]
gi|427256854|gb|EKW23002.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0943]
gi|427274140|gb|EKW38801.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0427]
gi|427296711|gb|EKW59759.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0003]
gi|427309915|gb|EKW72201.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0007]
gi|427325460|gb|EKW86900.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0713]
gi|429250691|gb|EKY35341.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0010]
gi|429354130|gb|EKY90834.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02030]
gi|429354983|gb|EKY91677.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02033-1]
gi|429355975|gb|EKY92658.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02092]
gi|429369700|gb|EKZ06275.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02093]
gi|429369995|gb|EKZ06562.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02281]
gi|429371740|gb|EKZ08291.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02318]
gi|429385867|gb|EKZ22319.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02913]
gi|429387816|gb|EKZ24247.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03439]
gi|429387996|gb|EKZ24423.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03943]
gi|429398944|gb|EKZ35269.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-04080]
gi|429401059|gb|EKZ37368.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429403621|gb|EKZ39903.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429412014|gb|EKZ48212.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429414147|gb|EKZ50323.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429422266|gb|EKZ58386.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429425143|gb|EKZ61234.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429430862|gb|EKZ66913.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429437739|gb|EKZ73737.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429441594|gb|EKZ77563.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429446936|gb|EKZ82861.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429453175|gb|EKZ89044.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429458229|gb|EKZ94058.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430881972|gb|ELC05177.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE2]
gi|430894939|gb|ELC17215.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE12]
gi|430922110|gb|ELC42874.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE26]
gi|430949756|gb|ELC69182.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE181]
gi|430984614|gb|ELD01236.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE204]
gi|431001219|gb|ELD16806.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE208]
gi|431011961|gb|ELD26031.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE210]
gi|431016488|gb|ELD30033.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE213]
gi|431046854|gb|ELD56945.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE228]
gi|431065903|gb|ELD74652.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE234]
gi|431066212|gb|ELD74956.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE235]
gi|431069508|gb|ELD77836.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE236]
gi|431075033|gb|ELD82568.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE237]
gi|431102271|gb|ELE07097.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE51]
gi|431135527|gb|ELE37403.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE66]
gi|431154496|gb|ELE55299.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE76]
gi|431167158|gb|ELE67442.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE77]
gi|431176537|gb|ELE76495.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE83]
gi|431205121|gb|ELF03629.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE111]
gi|431206103|gb|ELF04535.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE116]
gi|431216417|gb|ELF14055.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE143]
gi|431226748|gb|ELF23906.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE156]
gi|431233796|gb|ELF29382.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE161]
gi|431248629|gb|ELF42822.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE171]
gi|431269061|gb|ELF60420.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE9]
gi|431288895|gb|ELF79650.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE42]
gi|431292445|gb|ELF82833.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE29]
gi|431314624|gb|ELG02557.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE48]
gi|431321247|gb|ELG08860.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE50]
gi|431322968|gb|ELG10525.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE54]
gi|431351518|gb|ELG38304.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE91]
gi|431358555|gb|ELG45206.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE101]
gi|431358872|gb|ELG45517.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE115]
gi|431381247|gb|ELG65878.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE135]
gi|431389915|gb|ELG73624.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE136]
gi|431394112|gb|ELG77653.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE140]
gi|431406404|gb|ELG89624.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE147]
gi|431410675|gb|ELG93831.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE146]
gi|431422141|gb|ELH04335.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE158]
gi|431450338|gb|ELH30825.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE190]
gi|431458467|gb|ELH38791.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE184]
gi|431466054|gb|ELH46133.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE196]
gi|431475178|gb|ELH54982.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE203]
gi|431476578|gb|ELH56368.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE197]
gi|431484867|gb|ELH64538.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE202]
gi|431525831|gb|ELI02605.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE105]
gi|431550752|gb|ELI24740.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE117]
gi|431560792|gb|ELI34299.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE120]
gi|431564308|gb|ELI37484.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE122]
gi|431577136|gb|ELI49788.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE125]
gi|431577648|gb|ELI50278.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE128]
gi|431605804|gb|ELI75191.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE138]
gi|431640965|gb|ELJ08710.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE163]
gi|431652445|gb|ELJ19595.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE166]
gi|431672194|gb|ELJ38466.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE177]
gi|431696969|gb|ELJ62118.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE82]
gi|431712298|gb|ELJ76595.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE90]
gi|431714749|gb|ELJ78928.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE95]
gi|441605221|emb|CCP97820.1| tRNA dihydrouridine synthase A [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|444571367|gb|ELV47851.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1775]
gi|444636108|gb|ELW09511.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1781]
gi|444656499|gb|ELW29023.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4880]
gi|444658560|gb|ELW31011.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0083]
gi|444666168|gb|ELW38246.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0670]
Length = 345
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|332280828|ref|ZP_08393241.1| tRNA-dihydrouridine synthase A [Shigella sp. D9]
gi|415814116|ref|ZP_11505746.1| tRNA-dihydrouridine synthase A [Escherichia coli LT-68]
gi|417224959|ref|ZP_12028250.1| tRNA dihydrouridine synthase A [Escherichia coli 96.154]
gi|417280697|ref|ZP_12067997.1| tRNA dihydrouridine synthase A [Escherichia coli 3003]
gi|417605017|ref|ZP_12255574.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_94C]
gi|417626327|ref|ZP_12276610.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_H.1.8]
gi|417669676|ref|ZP_12319205.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_O31]
gi|419319630|ref|ZP_13861420.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12A]
gi|419331777|ref|ZP_13873363.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12C]
gi|419378314|ref|ZP_13919322.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14B]
gi|422373781|ref|ZP_16454079.1| tRNA dihydrouridine synthase A [Escherichia coli MS 60-1]
gi|422815584|ref|ZP_16863799.1| tRNA-dihydrouridine synthase A [Escherichia coli M919]
gi|432634053|ref|ZP_19869966.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE80]
gi|323171192|gb|EFZ56840.1| tRNA-dihydrouridine synthase A [Escherichia coli LT-68]
gi|324014847|gb|EGB84066.1| tRNA dihydrouridine synthase A [Escherichia coli MS 60-1]
gi|332103180|gb|EGJ06526.1| tRNA-dihydrouridine synthase A [Shigella sp. D9]
gi|345346319|gb|EGW78649.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_94C]
gi|345369877|gb|EGX01857.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_H.1.8]
gi|378163273|gb|EHX24226.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12A]
gi|378164171|gb|EHX25118.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12C]
gi|378213172|gb|EHX73490.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14B]
gi|385541035|gb|EIF87847.1| tRNA-dihydrouridine synthase A [Escherichia coli M919]
gi|386200007|gb|EIH98998.1| tRNA dihydrouridine synthase A [Escherichia coli 96.154]
gi|386245026|gb|EII86756.1| tRNA dihydrouridine synthase A [Escherichia coli 3003]
gi|397782131|gb|EJK92999.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_O31]
gi|431166524|gb|ELE66839.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE80]
Length = 345
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|419078276|ref|ZP_13623767.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3F]
gi|419134258|ref|ZP_13679076.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5D]
gi|425270107|ref|ZP_18661709.1| tRNA-dihydrouridine synthase [Escherichia coli 5412]
gi|377916323|gb|EHU80410.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3F]
gi|377969396|gb|EHV32773.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5D]
gi|408179558|gb|EKI06216.1| tRNA-dihydrouridine synthase [Escherichia coli 5412]
Length = 345
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|416900741|ref|ZP_11929910.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_7v]
gi|417116352|ref|ZP_11967213.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2741]
gi|422801769|ref|ZP_16850264.1| tRNA dihydrouridine synthase A [Escherichia coli M863]
gi|323965711|gb|EGB61163.1| tRNA dihydrouridine synthase A [Escherichia coli M863]
gi|327250393|gb|EGE62106.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_7v]
gi|386138896|gb|EIG80051.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2741]
Length = 345
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|416790530|ref|ZP_11881227.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str.
493-89]
gi|416833963|ref|ZP_11900652.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
LSU-61]
gi|320644173|gb|EFX13238.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str.
493-89]
gi|320665665|gb|EFX32702.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
LSU-61]
Length = 339
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 105 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 164 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 224 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 281
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 282 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 312
>gi|322834778|ref|YP_004214805.1| yjbN family TIM-barrel protein [Rahnella sp. Y9602]
gi|384259998|ref|YP_005403932.1| yjbN family TIM-barrel protein [Rahnella aquatilis HX2]
gi|321169979|gb|ADW75678.1| TIM-barrel protein, yjbN family [Rahnella sp. Y9602]
gi|380755974|gb|AFE60365.1| yjbN family TIM-barrel protein [Rahnella aquatilis HX2]
Length = 335
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 134/249 (53%), Gaps = 17/249 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 95 NVGCPSDRVQ-NGMFGACLMGQASLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 154 FIRQVSENGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTLAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VMVGR AYQNP L +VD ++G+ + T ++ Y +
Sbjct: 214 KTLEEAKTHLQY-MDGVMVGREAYQNPGLLL-NVDRELFGSDAPLKTGPDIIRALYPYIE 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR----KADAAFQTCKTVKSFLEET 236
A L GTY + + + +L F PG F+R A A V+ L+
Sbjct: 272 AELSKGTY------LGHITRHILGLFQGVPGARQFRRHLSENAHKAGAGIDVVEQALQ-- 323
Query: 237 IVAIPDSVL 245
+VA P V+
Sbjct: 324 MVAQPQEVV 332
>gi|168784662|ref|ZP_02809669.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC869]
gi|168798291|ref|ZP_02823298.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC508]
gi|261225167|ref|ZP_05939448.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255581|ref|ZP_05948114.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
FRIK966]
gi|416319470|ref|ZP_11662022.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC1212]
gi|416328425|ref|ZP_11668185.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1125]
gi|419072340|ref|ZP_13617933.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3E]
gi|419083382|ref|ZP_13628820.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4A]
gi|419095770|ref|ZP_13641039.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4C]
gi|419101535|ref|ZP_13646716.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4D]
gi|419106665|ref|ZP_13651781.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4E]
gi|420272590|ref|ZP_14774932.1| tRNA-dihydrouridine synthase [Escherichia coli PA22]
gi|420278224|ref|ZP_14780497.1| tRNA-dihydrouridine synthase [Escherichia coli PA40]
gi|420284688|ref|ZP_14786908.1| tRNA-dihydrouridine synthase [Escherichia coli TW10246]
gi|420295243|ref|ZP_14797347.1| tRNA-dihydrouridine synthase [Escherichia coli TW11039]
gi|420301158|ref|ZP_14803196.1| tRNA-dihydrouridine synthase [Escherichia coli TW09109]
gi|420312442|ref|ZP_14814363.1| tRNA-dihydrouridine synthase [Escherichia coli EC1738]
gi|420318167|ref|ZP_14820029.1| tRNA-dihydrouridine synthase [Escherichia coli EC1734]
gi|421815159|ref|ZP_16250851.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0416]
gi|421826963|ref|ZP_16262309.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK920]
gi|424086814|ref|ZP_17823274.1| tRNA-dihydrouridine synthase [Escherichia coli FDA517]
gi|424093232|ref|ZP_17829131.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1996]
gi|424099926|ref|ZP_17835150.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1985]
gi|424106124|ref|ZP_17840824.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1990]
gi|424131049|ref|ZP_17863927.1| tRNA-dihydrouridine synthase [Escherichia coli PA9]
gi|424137366|ref|ZP_17869776.1| tRNA-dihydrouridine synthase [Escherichia coli PA10]
gi|424336356|ref|ZP_17898537.1| tRNA-dihydrouridine synthase [Escherichia coli PA28]
gi|424465330|ref|ZP_17915614.1| tRNA-dihydrouridine synthase [Escherichia coli PA39]
gi|424471550|ref|ZP_17921324.1| tRNA-dihydrouridine synthase [Escherichia coli PA41]
gi|424483824|ref|ZP_17932779.1| tRNA-dihydrouridine synthase [Escherichia coli TW07945]
gi|424490020|ref|ZP_17938529.1| tRNA-dihydrouridine synthase [Escherichia coli TW09098]
gi|424496739|ref|ZP_17944220.1| tRNA-dihydrouridine synthase [Escherichia coli TW09195]
gi|424517029|ref|ZP_17961581.1| tRNA-dihydrouridine synthase [Escherichia coli TW14313]
gi|424523145|ref|ZP_17967224.1| tRNA-dihydrouridine synthase [Escherichia coli TW14301]
gi|424559791|ref|ZP_18001160.1| tRNA-dihydrouridine synthase [Escherichia coli EC4436]
gi|424566113|ref|ZP_18007091.1| tRNA-dihydrouridine synthase [Escherichia coli EC4437]
gi|424584222|ref|ZP_18023844.1| tRNA-dihydrouridine synthase [Escherichia coli EC1863]
gi|425106972|ref|ZP_18509261.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
5.2239]
gi|425134666|ref|ZP_18535494.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.2524]
gi|425146938|ref|ZP_18546907.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0869]
gi|425158951|ref|ZP_18558190.1| tRNA-dihydrouridine synthase [Escherichia coli PA34]
gi|425183121|ref|ZP_18580793.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1999]
gi|425196152|ref|ZP_18592897.1| tRNA-dihydrouridine synthase [Escherichia coli NE1487]
gi|425202631|ref|ZP_18598814.1| tRNA-dihydrouridine synthase [Escherichia coli NE037]
gi|425202998|ref|ZP_18599160.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK2001]
gi|425245851|ref|ZP_18639134.1| tRNA-dihydrouridine synthase [Escherichia coli MA6]
gi|425257842|ref|ZP_18650313.1| tRNA-dihydrouridine synthase [Escherichia coli CB7326]
gi|425264095|ref|ZP_18656062.1| tRNA-dihydrouridine synthase [Escherichia coli EC96038]
gi|425297571|ref|ZP_18687665.1| tRNA-dihydrouridine synthase [Escherichia coli PA38]
gi|425314257|ref|ZP_18703401.1| tRNA-dihydrouridine synthase [Escherichia coli EC1735]
gi|425326383|ref|ZP_18714685.1| tRNA-dihydrouridine synthase [Escherichia coli EC1737]
gi|425375795|ref|ZP_18760409.1| tRNA-dihydrouridine synthase [Escherichia coli EC1864]
gi|425388680|ref|ZP_18772216.1| tRNA-dihydrouridine synthase [Escherichia coli EC1866]
gi|425395410|ref|ZP_18778492.1| tRNA-dihydrouridine synthase [Escherichia coli EC1868]
gi|425401465|ref|ZP_18784147.1| tRNA-dihydrouridine synthase [Escherichia coli EC1869]
gi|425407562|ref|ZP_18789759.1| tRNA-dihydrouridine synthase [Escherichia coli EC1870]
gi|428949936|ref|ZP_19022183.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1467]
gi|428968634|ref|ZP_19039313.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0091]
gi|428974385|ref|ZP_19044672.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0039]
gi|429005071|ref|ZP_19073105.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0183]
gi|429035578|ref|ZP_19101074.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0939]
gi|429041686|ref|ZP_19106749.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0932]
gi|429057941|ref|ZP_19122198.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.1742]
gi|429070193|ref|ZP_19133603.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0672]
gi|444927832|ref|ZP_21247076.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
09BKT078844]
gi|444933457|ref|ZP_21252446.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0814]
gi|444938898|ref|ZP_21257611.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0815]
gi|444944527|ref|ZP_21262995.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0816]
gi|444982946|ref|ZP_21299834.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
ATCC 700728]
gi|444998870|ref|ZP_21315354.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA13]
gi|445004425|ref|ZP_21320798.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA2]
gi|445014945|ref|ZP_21331033.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA48]
gi|445020804|ref|ZP_21336751.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA8]
gi|445026240|ref|ZP_21342046.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
7.1982]
gi|445037097|ref|ZP_21352606.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1762]
gi|189375043|gb|EDU93459.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC869]
gi|189379226|gb|EDU97642.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC508]
gi|320190826|gb|EFW65476.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC1212]
gi|326341906|gb|EGD65689.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1125]
gi|377905841|gb|EHU70100.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3E]
gi|377922418|gb|EHU86404.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4A]
gi|377936091|gb|EHU99885.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4D]
gi|377936617|gb|EHV00411.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4C]
gi|377942952|gb|EHV06675.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4E]
gi|390636437|gb|EIN16021.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1996]
gi|390637605|gb|EIN17147.1| tRNA-dihydrouridine synthase [Escherichia coli FDA517]
gi|390655447|gb|EIN33390.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1985]
gi|390658220|gb|EIN36019.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1990]
gi|390679983|gb|EIN55839.1| tRNA-dihydrouridine synthase [Escherichia coli PA9]
gi|390691203|gb|EIN65962.1| tRNA-dihydrouridine synthase [Escherichia coli PA10]
gi|390710719|gb|EIN83721.1| tRNA-dihydrouridine synthase [Escherichia coli PA22]
gi|390723479|gb|EIN96074.1| tRNA-dihydrouridine synthase [Escherichia coli PA28]
gi|390754989|gb|EIO24539.1| tRNA-dihydrouridine synthase [Escherichia coli PA40]
gi|390756577|gb|EIO26082.1| tRNA-dihydrouridine synthase [Escherichia coli PA39]
gi|390761239|gb|EIO30536.1| tRNA-dihydrouridine synthase [Escherichia coli PA41]
gi|390784577|gb|EIO52144.1| tRNA-dihydrouridine synthase [Escherichia coli TW07945]
gi|390792323|gb|EIO59677.1| tRNA-dihydrouridine synthase [Escherichia coli TW11039]
gi|390796476|gb|EIO63752.1| tRNA-dihydrouridine synthase [Escherichia coli TW10246]
gi|390799262|gb|EIO66435.1| tRNA-dihydrouridine synthase [Escherichia coli TW09098]
gi|390803893|gb|EIO70880.1| tRNA-dihydrouridine synthase [Escherichia coli TW09109]
gi|390820925|gb|EIO87170.1| tRNA-dihydrouridine synthase [Escherichia coli TW09195]
gi|390839958|gb|EIP04034.1| tRNA-dihydrouridine synthase [Escherichia coli TW14313]
gi|390842198|gb|EIP06064.1| tRNA-dihydrouridine synthase [Escherichia coli TW14301]
gi|390879811|gb|EIP40551.1| tRNA-dihydrouridine synthase [Escherichia coli EC4436]
gi|390889585|gb|EIP49310.1| tRNA-dihydrouridine synthase [Escherichia coli EC4437]
gi|390897500|gb|EIP56820.1| tRNA-dihydrouridine synthase [Escherichia coli EC1738]
gi|390905059|gb|EIP64010.1| tRNA-dihydrouridine synthase [Escherichia coli EC1734]
gi|390914786|gb|EIP73317.1| tRNA-dihydrouridine synthase [Escherichia coli EC1863]
gi|408061712|gb|EKG96220.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK920]
gi|408062719|gb|EKG97220.1| tRNA-dihydrouridine synthase [Escherichia coli PA34]
gi|408093861|gb|EKH26909.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1999]
gi|408105171|gb|EKH37371.1| tRNA-dihydrouridine synthase [Escherichia coli NE1487]
gi|408111993|gb|EKH43683.1| tRNA-dihydrouridine synthase [Escherichia coli NE037]
gi|408133493|gb|EKH63390.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK2001]
gi|408156706|gb|EKH84906.1| tRNA-dihydrouridine synthase [Escherichia coli MA6]
gi|408169757|gb|EKH97002.1| tRNA-dihydrouridine synthase [Escherichia coli CB7326]
gi|408176509|gb|EKI03357.1| tRNA-dihydrouridine synthase [Escherichia coli EC96038]
gi|408209314|gb|EKI33913.1| tRNA-dihydrouridine synthase [Escherichia coli PA38]
gi|408223192|gb|EKI46984.1| tRNA-dihydrouridine synthase [Escherichia coli EC1735]
gi|408236855|gb|EKI59731.1| tRNA-dihydrouridine synthase [Escherichia coli EC1737]
gi|408287627|gb|EKJ06484.1| tRNA-dihydrouridine synthase [Escherichia coli EC1864]
gi|408302509|gb|EKJ20013.1| tRNA-dihydrouridine synthase [Escherichia coli EC1868]
gi|408303695|gb|EKJ21144.1| tRNA-dihydrouridine synthase [Escherichia coli EC1866]
gi|408315132|gb|EKJ31461.1| tRNA-dihydrouridine synthase [Escherichia coli EC1869]
gi|408320768|gb|EKJ36839.1| tRNA-dihydrouridine synthase [Escherichia coli EC1870]
gi|408543932|gb|EKK21405.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
5.2239]
gi|408577476|gb|EKK53049.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.2524]
gi|408587861|gb|EKK62485.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0869]
gi|408598120|gb|EKK72080.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0416]
gi|427203743|gb|EKV74041.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1467]
gi|427216870|gb|EKV85959.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0091]
gi|427223476|gb|EKV92220.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0039]
gi|427254977|gb|EKW21253.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0183]
gi|427279883|gb|EKW44283.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0939]
gi|427288468|gb|EKW52099.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0932]
gi|427308480|gb|EKW70861.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.1742]
gi|427314711|gb|EKW76747.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0672]
gi|444534568|gb|ELV14789.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0814]
gi|444535507|gb|ELV15578.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
09BKT078844]
gi|444544890|gb|ELV23876.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0815]
gi|444553672|gb|ELV31276.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0816]
gi|444588248|gb|ELV63633.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
ATCC 700728]
gi|444602466|gb|ELV77207.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA13]
gi|444611520|gb|ELV85847.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA2]
gi|444619373|gb|ELV93414.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA48]
gi|444625634|gb|ELV99454.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA8]
gi|444634484|gb|ELW07956.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
7.1982]
gi|444641079|gb|ELW14320.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1762]
Length = 345
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|84393138|ref|ZP_00991902.1| NifR3/Smm1 family protein [Vibrio splendidus 12B01]
gi|84376190|gb|EAP93074.1| NifR3/Smm1 family protein [Vibrio splendidus 12B01]
Length = 334
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 123/215 (57%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + +S + T++P++VK RIG+DD DSY L
Sbjct: 98 NVGCPSDRVQ-NGRFGACLMAEPELVADCVSAMKEVTDIPITVKTRIGIDDQDSYEFLTK 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y+ Y + +DF DL +NGG+
Sbjct: 157 FVSTVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYDRAYQIKKDFSDLVIAVNGGV 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VM+GR AY +P + L VD I+G + R QVVE+ Y +
Sbjct: 217 TTLEQTKEHLQH-LDGVMIGREAYHSP-FILAEVDQQIFGLDTPIKKRSQVVEEMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N + + + +L F S PG ++R
Sbjct: 275 REL----SNGASLGHISRHMLGLFQSMPGARQWRR 305
>gi|301046994|ref|ZP_07194104.1| tRNA dihydrouridine synthase A [Escherichia coli MS 185-1]
gi|415838167|ref|ZP_11520150.1| tRNA-dihydrouridine synthase A [Escherichia coli RN587/1]
gi|425302971|ref|ZP_18692844.1| tRNA-dihydrouridine synthase A [Escherichia coli 07798]
gi|442605866|ref|ZP_21020680.1| tRNA dihydrouridine synthase A [Escherichia coli Nissle 1917]
gi|300301082|gb|EFJ57467.1| tRNA dihydrouridine synthase A [Escherichia coli MS 185-1]
gi|323190088|gb|EFZ75366.1| tRNA-dihydrouridine synthase A [Escherichia coli RN587/1]
gi|408209754|gb|EKI34338.1| tRNA-dihydrouridine synthase A [Escherichia coli 07798]
gi|441713128|emb|CCQ06657.1| tRNA dihydrouridine synthase A [Escherichia coli Nissle 1917]
Length = 313
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 79 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 138 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 198 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 255
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 256 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 286
>gi|193067849|ref|ZP_03048815.1| tRNA-dihydrouridine synthase A [Escherichia coli E110019]
gi|192958824|gb|EDV89261.1| tRNA-dihydrouridine synthase A [Escherichia coli E110019]
Length = 339
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 105 NVGCPSDRVQ-NGMFGACLMGNTQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 164 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 224 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 281
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 282 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 312
>gi|167625570|ref|YP_001675864.1| tRNA-dihydrouridine synthase A [Shewanella halifaxensis HAW-EB4]
gi|167355592|gb|ABZ78205.1| TIM-barrel protein, yjbN family [Shewanella halifaxensis HAW-EB4]
Length = 328
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 124/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E +S + ++P++VK RIG+D+ DSY L
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMAEPELVAECVSAMKQVVDIPITVKTRIGIDEQDSYEFLTQ 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + + F IH+RKA L G+SP ENR IPPL YE Y L RD+P L ++NGGI
Sbjct: 152 FIDTVKA-AGCEEFTIHARKAWLQGLSPKENREIPPLDYERVYQLKRDYPQLNISINGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VMVGR AYQNP Y L VD + G + ++R V+EK Y +
Sbjct: 211 KTLEECQTHLQH-LDGVMVGREAYQNP-YILAEVDQKLCGIDTPVISRDAVLEKLLPYIE 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + + + ++ + E G+ +++R
Sbjct: 269 KHLQQGG----RLNHITRHIIGLYQGEVGSRVWRR 299
>gi|260870808|ref|YP_003237210.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H- str.
11128]
gi|415823434|ref|ZP_11511809.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1180]
gi|417200988|ref|ZP_12017672.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0522]
gi|417206238|ref|ZP_12019316.1| tRNA dihydrouridine synthase A [Escherichia coli JB1-95]
gi|417594583|ref|ZP_12245268.1| tRNA-dihydrouridine synthase A [Escherichia coli 2534-86]
gi|419199876|ref|ZP_13743157.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC8A]
gi|419206262|ref|ZP_13749409.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8B]
gi|419224200|ref|ZP_13767105.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8E]
gi|419889320|ref|ZP_14409738.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9570]
gi|419893875|ref|ZP_14413826.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9574]
gi|420089152|ref|ZP_14600989.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9602]
gi|420094959|ref|ZP_14606505.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9634]
gi|424773293|ref|ZP_18200356.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CFSAN001632]
gi|257767164|dbj|BAI38659.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H- str.
11128]
gi|323175935|gb|EFZ61527.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1180]
gi|345330857|gb|EGW63320.1| tRNA-dihydrouridine synthase A [Escherichia coli 2534-86]
gi|378041616|gb|EHW04075.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC8A]
gi|378042064|gb|EHW04516.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8B]
gi|378059387|gb|EHW21587.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8E]
gi|386187447|gb|EIH76266.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0522]
gi|386197721|gb|EIH91920.1| tRNA dihydrouridine synthase A [Escherichia coli JB1-95]
gi|388357917|gb|EIL22415.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9570]
gi|388365760|gb|EIL29536.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9574]
gi|394388842|gb|EJE66080.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9602]
gi|394394652|gb|EJE71212.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9634]
gi|421936655|gb|EKT94316.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CFSAN001632]
Length = 345
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNTQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|209520920|ref|ZP_03269659.1| TIM-barrel protein, yjbN family [Burkholderia sp. H160]
gi|209498644|gb|EDZ98760.1| TIM-barrel protein, yjbN family [Burkholderia sp. H160]
Length = 317
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 124/217 (57%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 80 NCGCPSERVR-RGAFGACLMNEPQLVADCVKAMRDVVSVPVTVKHRIGVDTVEEYGFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 139 FVGTIAQ-AGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYQLKRDFPQLEIIINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY-- 180
T+DEV+ L+ VM+GR AY NP Y L VD+ YG+ + LTR QV K Y
Sbjct: 198 KTLDEVDTHLQH-VDGVMLGREAYHNP-YVLAEVDSRFYGSTQAPLTREQVEAKLIEYCA 255
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ GTY + + + L + E G ++R
Sbjct: 256 TEMARGTY------LGAITRHALGLYRGEAGARGWRR 286
>gi|336316388|ref|ZP_08571287.1| tRNA dihydrouridine synthase A [Rheinheimera sp. A13L]
gi|335879257|gb|EGM77157.1| tRNA dihydrouridine synthase A [Rheinheimera sp. A13L]
Length = 333
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P+ V + + A ++PV+VK RIG+DDHDSY L D
Sbjct: 101 NVGCPSDRVQ-NGMFGACLMARPELVAACIHEMRAVVDIPVTVKSRIGIDDHDSYQFLVD 159
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI ++ S FI+H+RKA L+G+SP ENR IPPL YE Y L +DFP L ++NGG+
Sbjct: 160 FIGTIAE-SGCNQFIVHARKAWLSGLSPKENREIPPLDYERVYQLKKDFPHLDISINGGV 218
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L+ VMVGR AY NP L +D AIY P + T QVVE Y +
Sbjct: 219 KTLADCLTHLQH-VDGVMVGREAYSNP-LMLAQIDAAIYNNPRAVPTPHQVVELMLPYIE 276
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ T G H + + +L F PG L++R
Sbjct: 277 RQM-TQGARFWH---IARHMLGLFQGVPGARLWRR 307
>gi|300714901|ref|YP_003739704.1| tRNA-dihydrouridine synthase A [Erwinia billingiae Eb661]
gi|299060737|emb|CAX57844.1| tRNA-dihydrouridine synthase A [Erwinia billingiae Eb661]
Length = 331
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 135/243 (55%), Gaps = 9/243 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + + + ++PV+VK RIG+D+ DSY LC+
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMGEPALVADGIKAMRDQVSIPVTVKTRIGIDEQDSYEFLCE 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +VS FIIH+RKA L+G+SP ENR IPPL YE Y L RDFP LT ++NGGI
Sbjct: 152 FIRQVSEQGGCDSFIIHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLTMSINGGI 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E L+ VM+GR AYQNP L VD ++G+ VV Y +
Sbjct: 212 KSLAEAKVHLQH-VDGVMMGREAYQNPGL-LAQVDRELFGSELPAPDPVAVVRAMYPYIE 269
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSFLEETIVAIP 241
A L N ++ + + +L F PG ++R ++ A + +++ +E+ + +
Sbjct: 270 AELA----NGTYLGHITRHMLGLFQGIPGARQWRRHLSENAHKPGANIET-VEQALALVA 324
Query: 242 DSV 244
D +
Sbjct: 325 DKI 327
>gi|260858159|ref|YP_003232050.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
11368]
gi|419263959|ref|ZP_13806360.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10B]
gi|419270071|ref|ZP_13812410.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10C]
gi|419275438|ref|ZP_13817720.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10D]
gi|419287034|ref|ZP_13829188.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10F]
gi|425382459|ref|ZP_18766425.1| tRNA-dihydrouridine synthase [Escherichia coli EC1865]
gi|432677230|ref|ZP_19912667.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE142]
gi|257756808|dbj|BAI28310.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
11368]
gi|378100726|gb|EHW62418.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10B]
gi|378105988|gb|EHW67624.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10C]
gi|378111959|gb|EHW73540.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10D]
gi|378123875|gb|EHW85291.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10F]
gi|408292570|gb|EKJ11081.1| tRNA-dihydrouridine synthase [Escherichia coli EC1865]
gi|431209328|gb|ELF07437.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE142]
Length = 345
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNTQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|254424029|ref|ZP_05037747.1| TIM-barrel protein, yjbN family [Synechococcus sp. PCC 7335]
gi|196191518|gb|EDX86482.1| TIM-barrel protein, yjbN family [Synechococcus sp. PCC 7335]
Length = 355
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 124/218 (56%), Gaps = 13/218 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V + +S + A + +PVSVK RIG+DD DSY + +
Sbjct: 79 NVGCPSDRVQS-GNFGACLMAQPERVADCVSAMIAASALPVSVKHRIGIDDQDSYEDMAN 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS+ R F +H+RKA L G+SP +NR IPPL+Y + L ++FP L +NGG
Sbjct: 138 FVTIVSATGCQR-FSVHARKAWLQGLSPKDNRNIPPLRYADVHRLKQEFPHLQIEINGGF 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEK---YQI 179
T+ +V LR VM+GRAAY P + D I+G + TR QVVE Y
Sbjct: 197 KTLAQVKNQLR-AVDAVMIGRAAYDIP-FLFEKADQEIFGETTEPQTRYQVVESMLPYID 254
Query: 180 YGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
Y LGT + + + +LH FH +PG+ ++K+
Sbjct: 255 YHTQKLGT------RLHSITRHMLHLFHGQPGSRIWKQ 286
>gi|444428866|ref|ZP_21224162.1| tRNA-dihydrouridine synthase A [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444237906|gb|ELU49549.1| tRNA-dihydrouridine synthase A [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 326
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 131/240 (54%), Gaps = 7/240 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L DF+
Sbjct: 92 GCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDVVDIPVTVKTRIGIDDQDSYEFLTDFV 150
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+ +
Sbjct: 151 SIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLTIAINGGVKS 210
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +A
Sbjct: 211 LEEAKEHLQY-LDGVMIGREAYQSP-YLLASVDQELFGSNTPVKKRSEIVEEMYPYIEAQ 268
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSV 244
L ++ + + +L F S PG ++R + L++ + IP +
Sbjct: 269 LA----KGAYLGHITRHMLGLFQSMPGARQWRRHISENAHKPGSGLEVLQDALAKIPKEL 324
>gi|419325896|ref|ZP_13867574.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12B]
gi|378159970|gb|EHX20968.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12B]
Length = 345
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|345879168|ref|ZP_08830841.1| fatty acid hydroxylase [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344223800|gb|EGV50230.1| fatty acid hydroxylase [endosymbiont of Riftia pachyptila (vent
Ph05)]
Length = 329
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 122/215 (56%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G G LM P+ V + + + ++PV+VK RIG+DD+DSY L
Sbjct: 96 NVGCPSDRVQ-NGMIGACLMAHPELVADCVRAMKEAVSIPVTVKTRIGIDDNDSYAALQG 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + HFIIH+RKA L G+SP ENR +PPL+YE L +DFP++ FT+NGGI
Sbjct: 155 FVAAQIG-AGCDHFIIHARKAWLQGLSPKENREVPPLRYEIVQQLKQDFPEMGFTINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L +G VM+GR AY NPW L D IYG L+R QV+E++ + +
Sbjct: 214 QTLT-LAEQLLQGLDGVMIGREAYHNPW-ILAEADRRIYGDNQPQLSRHQVLERFMPFVE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + + + +L FH PG ++R
Sbjct: 272 QQL----QRGIPLNRITRHILGLFHGCPGARAWRR 302
>gi|307729510|ref|YP_003906734.1| yjbN family TIM-barrel protein [Burkholderia sp. CCGE1003]
gi|307584045|gb|ADN57443.1| TIM-barrel protein, yjbN family [Burkholderia sp. CCGE1003]
Length = 333
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 109/178 (61%), Gaps = 4/178 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + VPV+VK RIGVD + Y+ + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVGVPVTVKHRIGVDAVEDYSFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 155 FVGTIAE-AGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQLEIVINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+DEV A L+ VM+GR AY NP Y L VD YG+ + LTR QV K Y
Sbjct: 214 KTLDEVEAHLQH-VDGVMLGREAYHNP-YLLADVDARFYGSAEAPLTREQVEAKLIEY 269
>gi|26250830|ref|NP_756870.1| tRNA-dihydrouridine synthase A [Escherichia coli CFT073]
gi|91213570|ref|YP_543556.1| tRNA-dihydrouridine synthase A [Escherichia coli UTI89]
gi|110644384|ref|YP_672114.1| tRNA-dihydrouridine synthase A [Escherichia coli 536]
gi|117626314|ref|YP_859637.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O1]
gi|191172024|ref|ZP_03033569.1| tRNA-dihydrouridine synthase A [Escherichia coli F11]
gi|215489385|ref|YP_002331816.1| tRNA-dihydrouridine synthase A [Escherichia coli O127:H6 str.
E2348/69]
gi|218561117|ref|YP_002394030.1| tRNA-dihydrouridine synthase A [Escherichia coli S88]
gi|218692332|ref|YP_002400544.1| tRNA-dihydrouridine synthase A [Escherichia coli ED1a]
gi|222158756|ref|YP_002558895.1| tRNA-dihydrouridine synthase A [Escherichia coli LF82]
gi|227886947|ref|ZP_04004752.1| tRNA-dihydrouridine synthase A [Escherichia coli 83972]
gi|237703603|ref|ZP_04534084.1| tRNA-dihydrouridine synthase A [Escherichia sp. 3_2_53FAA]
gi|306815840|ref|ZP_07449985.1| tRNA-dihydrouridine synthase A [Escherichia coli NC101]
gi|331660615|ref|ZP_08361547.1| tRNA-dihydrouridine synthase A [Escherichia coli TA206]
gi|386602090|ref|YP_006103596.1| tRNA-dihydrouridine synthase A [Escherichia coli IHE3034]
gi|386606612|ref|YP_006112912.1| tRNA-dihydrouridine synthase A [Escherichia coli UM146]
gi|386621742|ref|YP_006141322.1| tRNA dihydrouridine synthase A [Escherichia coli NA114]
gi|386632022|ref|YP_006151742.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D i2']
gi|386636942|ref|YP_006156661.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D
i14']
gi|386641700|ref|YP_006108498.1| tRNA-dihydrouridine synthase A [Escherichia coli ABU 83972]
gi|387619365|ref|YP_006122387.1| tRNA-dihydrouridine synthase A [Escherichia coli O83:H1 str. NRG
857C]
gi|387831956|ref|YP_003351893.1| hypothetical protein ECSF_3903 [Escherichia coli SE15]
gi|417088162|ref|ZP_11954891.1| tRNA-dihydrouridine synthase A [Escherichia coli cloneA_i1]
gi|417287891|ref|ZP_12075177.1| tRNA dihydrouridine synthase A [Escherichia coli TW07793]
gi|417664694|ref|ZP_12314273.1| tRNA dihydrouridine synthase A [Escherichia coli AA86]
gi|419702916|ref|ZP_14230498.1| tRNA-dihydrouridine synthase A [Escherichia coli SCI-07]
gi|419913185|ref|ZP_14431627.1| tRNA-dihydrouridine synthase A [Escherichia coli KD1]
gi|419943137|ref|ZP_14459707.1| tRNA-dihydrouridine synthase A [Escherichia coli HM605]
gi|422751074|ref|ZP_16804984.1| tRNA dihydrouridine synthase A [Escherichia coli H252]
gi|422757189|ref|ZP_16811010.1| tRNA dihydrouridine synthase A [Escherichia coli H263]
gi|422840511|ref|ZP_16888482.1| tRNA-dihydrouridine synthase A [Escherichia coli H397]
gi|425280507|ref|ZP_18671715.1| tRNA-dihydrouridine synthase A [Escherichia coli ARS4.2123]
gi|432360522|ref|ZP_19603729.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE4]
gi|432365322|ref|ZP_19608471.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE5]
gi|432383964|ref|ZP_19626884.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE15]
gi|432384979|ref|ZP_19627884.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE16]
gi|432395454|ref|ZP_19638250.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE25]
gi|432409140|ref|ZP_19651838.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE28]
gi|432419670|ref|ZP_19662233.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE178]
gi|432429809|ref|ZP_19672261.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE187]
gi|432439028|ref|ZP_19681400.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE188]
gi|432454298|ref|ZP_19696515.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE201]
gi|432468458|ref|ZP_19710529.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE205]
gi|432473417|ref|ZP_19715450.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE206]
gi|432502626|ref|ZP_19744371.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE216]
gi|432506961|ref|ZP_19748675.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE220]
gi|432516455|ref|ZP_19753666.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE224]
gi|432526543|ref|ZP_19763651.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE230]
gi|432556581|ref|ZP_19793283.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE49]
gi|432566482|ref|ZP_19803018.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE53]
gi|432571368|ref|ZP_19807864.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE55]
gi|432580849|ref|ZP_19817270.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE57]
gi|432585834|ref|ZP_19822212.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE58]
gi|432590647|ref|ZP_19826984.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE60]
gi|432595351|ref|ZP_19831649.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE62]
gi|432605507|ref|ZP_19841712.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE67]
gi|432648737|ref|ZP_19884518.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE86]
gi|432653723|ref|ZP_19889458.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE87]
gi|432658305|ref|ZP_19893997.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE93]
gi|432696934|ref|ZP_19932121.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE162]
gi|432701581|ref|ZP_19936721.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE169]
gi|432708455|ref|ZP_19943527.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE6]
gi|432715923|ref|ZP_19950944.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE8]
gi|432721212|ref|ZP_19956145.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE17]
gi|432725610|ref|ZP_19960516.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE18]
gi|432730372|ref|ZP_19965236.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE45]
gi|432739392|ref|ZP_19974116.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE23]
gi|432748040|ref|ZP_19982698.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE43]
gi|432757024|ref|ZP_19991564.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE22]
gi|432761921|ref|ZP_19996390.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE46]
gi|432776393|ref|ZP_20010654.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE59]
gi|432781392|ref|ZP_20015599.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE63]
gi|432790092|ref|ZP_20024216.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE65]
gi|432818859|ref|ZP_20052577.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE118]
gi|432824988|ref|ZP_20058649.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE123]
gi|432841898|ref|ZP_20075340.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE141]
gi|432891895|ref|ZP_20104374.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE165]
gi|432896081|ref|ZP_20107358.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE192]
gi|432908008|ref|ZP_20116270.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE194]
gi|432941090|ref|ZP_20138784.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE183]
gi|432969653|ref|ZP_20158546.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE207]
gi|432976292|ref|ZP_20165121.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE209]
gi|432978938|ref|ZP_20167733.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE211]
gi|432987914|ref|ZP_20176620.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE215]
gi|432988561|ref|ZP_20177237.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE217]
gi|432993273|ref|ZP_20181900.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE218]
gi|432997732|ref|ZP_20186308.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE223]
gi|433003009|ref|ZP_20191513.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE227]
gi|433010268|ref|ZP_20198676.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE229]
gi|433031017|ref|ZP_20218853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE109]
gi|433041086|ref|ZP_20228666.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE113]
gi|433060598|ref|ZP_20247621.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE124]
gi|433075407|ref|ZP_20262033.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE129]
gi|433080280|ref|ZP_20266789.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE131]
gi|433084999|ref|ZP_20271436.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE133]
gi|433089802|ref|ZP_20276152.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE137]
gi|433098903|ref|ZP_20285061.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE139]
gi|433103672|ref|ZP_20289732.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE145]
gi|433108334|ref|ZP_20294285.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE148]
gi|433113347|ref|ZP_20299186.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE150]
gi|433118006|ref|ZP_20303777.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE153]
gi|433122736|ref|ZP_20308383.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE157]
gi|433127708|ref|ZP_20313240.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE160]
gi|433141781|ref|ZP_20327010.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE167]
gi|433146709|ref|ZP_20331831.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE168]
gi|433151733|ref|ZP_20336721.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE174]
gi|433156303|ref|ZP_20341220.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE176]
gi|433166089|ref|ZP_20350807.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE179]
gi|433171087|ref|ZP_20355695.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE180]
gi|433185864|ref|ZP_20370089.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE85]
gi|433190879|ref|ZP_20374956.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE88]
gi|433200840|ref|ZP_20384713.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE94]
gi|433210269|ref|ZP_20393923.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE97]
gi|433215106|ref|ZP_20398670.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE99]
gi|38604877|sp|Q8FB30.1|DUSA_ECOL6 RecName: Full=tRNA-dihydrouridine synthase A
gi|26111261|gb|AAN83444.1|AE016770_244 Hypothetical protein yjbN [Escherichia coli CFT073]
gi|91075144|gb|ABE10025.1| hypothetical protein YjbN [Escherichia coli UTI89]
gi|110345976|gb|ABG72213.1| hypothetical protein YjbN (putative tRNA-dihydrouridine synthase)
[Escherichia coli 536]
gi|115515438|gb|ABJ03513.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O1]
gi|190907789|gb|EDV67383.1| tRNA-dihydrouridine synthase A [Escherichia coli F11]
gi|215267457|emb|CAS11910.1| tRNA-dihydrouridine synthase A [Escherichia coli O127:H6 str.
E2348/69]
gi|218367886|emb|CAR05681.1| tRNA-dihydrouridine synthase A [Escherichia coli S88]
gi|218429896|emb|CAR10723.1| tRNA-dihydrouridine synthase A [Escherichia coli ED1a]
gi|222035761|emb|CAP78506.1| tRNA-dihydrouridine synthase A [Escherichia coli LF82]
gi|226901515|gb|EEH87774.1| tRNA-dihydrouridine synthase A [Escherichia sp. 3_2_53FAA]
gi|227836088|gb|EEJ46554.1| tRNA-dihydrouridine synthase A [Escherichia coli 83972]
gi|281181113|dbj|BAI57443.1| conserved hypothetical protein [Escherichia coli SE15]
gi|294489479|gb|ADE88235.1| tRNA-dihydrouridine synthase A [Escherichia coli IHE3034]
gi|305850815|gb|EFM51271.1| tRNA-dihydrouridine synthase A [Escherichia coli NC101]
gi|307556192|gb|ADN48967.1| tRNA-dihydrouridine synthase A [Escherichia coli ABU 83972]
gi|307629096|gb|ADN73400.1| tRNA-dihydrouridine synthase A [Escherichia coli UM146]
gi|312948626|gb|ADR29453.1| tRNA-dihydrouridine synthase A [Escherichia coli O83:H1 str. NRG
857C]
gi|323950409|gb|EGB46290.1| tRNA dihydrouridine synthase A [Escherichia coli H252]
gi|323954491|gb|EGB50275.1| tRNA dihydrouridine synthase A [Escherichia coli H263]
gi|330908368|gb|EGH36887.1| tRNA dihydrouridine synthase A [Escherichia coli AA86]
gi|331051657|gb|EGI23696.1| tRNA-dihydrouridine synthase A [Escherichia coli TA206]
gi|333972243|gb|AEG39048.1| tRNA dihydrouridine synthase A [Escherichia coli NA114]
gi|355349206|gb|EHF98415.1| tRNA-dihydrouridine synthase A [Escherichia coli cloneA_i1]
gi|355422921|gb|AER87118.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D i2']
gi|355427841|gb|AER92037.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D
i14']
gi|371606200|gb|EHN94798.1| tRNA-dihydrouridine synthase A [Escherichia coli H397]
gi|380345931|gb|EIA34237.1| tRNA-dihydrouridine synthase A [Escherichia coli SCI-07]
gi|386248676|gb|EII94848.1| tRNA dihydrouridine synthase A [Escherichia coli TW07793]
gi|388390010|gb|EIL51513.1| tRNA-dihydrouridine synthase A [Escherichia coli KD1]
gi|388421812|gb|EIL81413.1| tRNA-dihydrouridine synthase A [Escherichia coli HM605]
gi|408196580|gb|EKI21859.1| tRNA-dihydrouridine synthase A [Escherichia coli ARS4.2123]
gi|430872230|gb|ELB95844.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE4]
gi|430882587|gb|ELC05666.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE5]
gi|430902607|gb|ELC24464.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE15]
gi|430911578|gb|ELC32859.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE16]
gi|430919738|gb|ELC40659.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE25]
gi|430925616|gb|ELC46282.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE28]
gi|430948977|gb|ELC68558.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE178]
gi|430958081|gb|ELC76679.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE187]
gi|430959226|gb|ELC77560.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE188]
gi|430987409|gb|ELD03948.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE201]
gi|430989354|gb|ELD05810.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE205]
gi|430994902|gb|ELD11214.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE206]
gi|431025256|gb|ELD38367.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE216]
gi|431034284|gb|ELD46225.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE220]
gi|431037366|gb|ELD48352.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE224]
gi|431046760|gb|ELD56853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE230]
gi|431095821|gb|ELE01422.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE49]
gi|431104526|gb|ELE08901.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE53]
gi|431112847|gb|ELE16528.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE55]
gi|431124246|gb|ELE26898.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE57]
gi|431125135|gb|ELE27565.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE58]
gi|431134773|gb|ELE36716.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE60]
gi|431135289|gb|ELE37204.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE62]
gi|431143486|gb|ELE45211.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE67]
gi|431177078|gb|ELE77016.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE86]
gi|431186358|gb|ELE85920.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE87]
gi|431186944|gb|ELE86476.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE93]
gi|431229533|gb|ELF26177.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE162]
gi|431239218|gb|ELF33863.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE169]
gi|431250335|gb|ELF44396.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE8]
gi|431254028|gb|ELF47504.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE6]
gi|431269735|gb|ELF61040.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE17]
gi|431278346|gb|ELF69339.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE18]
gi|431279632|gb|ELF70586.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE45]
gi|431287423|gb|ELF78233.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE23]
gi|431288818|gb|ELF79574.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE43]
gi|431298492|gb|ELF88117.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE22]
gi|431304244|gb|ELF92776.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE46]
gi|431333140|gb|ELG20355.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE59]
gi|431333524|gb|ELG20711.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE63]
gi|431334325|gb|ELG21487.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE65]
gi|431372059|gb|ELG57755.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE118]
gi|431376984|gb|ELG62123.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE123]
gi|431399550|gb|ELG82955.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE141]
gi|431425633|gb|ELH07702.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE194]
gi|431427690|gb|ELH09633.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE165]
gi|431432970|gb|ELH14645.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE192]
gi|431459094|gb|ELH39410.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE183]
gi|431484661|gb|ELH64335.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE209]
gi|431488968|gb|ELH68597.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE207]
gi|431492246|gb|ELH71848.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE215]
gi|431500550|gb|ELH79564.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE211]
gi|431501518|gb|ELH80499.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE217]
gi|431513071|gb|ELH91157.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE218]
gi|431520010|gb|ELH97439.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE223]
gi|431520438|gb|ELH97764.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE229]
gi|431520774|gb|ELH98094.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE227]
gi|431538844|gb|ELI14824.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE109]
gi|431547062|gb|ELI21444.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE113]
gi|431564779|gb|ELI37946.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE124]
gi|431580986|gb|ELI53441.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE129]
gi|431591980|gb|ELI62887.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE131]
gi|431596849|gb|ELI66790.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE133]
gi|431599306|gb|ELI69013.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE137]
gi|431611417|gb|ELI80695.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE139]
gi|431614400|gb|ELI83554.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE145]
gi|431622651|gb|ELI91338.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE148]
gi|431623350|gb|ELI92022.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE150]
gi|431629513|gb|ELI97875.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE153]
gi|431637669|gb|ELJ05723.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE157]
gi|431639117|gb|ELJ06988.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE160]
gi|431654258|gb|ELJ21317.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE167]
gi|431656329|gb|ELJ23316.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE168]
gi|431666311|gb|ELJ32953.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE174]
gi|431668920|gb|ELJ35359.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE176]
gi|431682291|gb|ELJ48058.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE179]
gi|431682726|gb|ELJ48375.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE180]
gi|431700396|gb|ELJ65375.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE85]
gi|431700574|gb|ELJ65551.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE88]
gi|431715577|gb|ELJ79724.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE94]
gi|431727576|gb|ELJ91331.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE97]
gi|431730578|gb|ELJ94141.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE99]
Length = 331
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 216 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 274 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 304
>gi|350529472|ref|ZP_08908413.1| tRNA-dihydrouridine synthase A [Vibrio rotiferianus DAT722]
Length = 326
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 132/240 (55%), Gaps = 7/240 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P+ V + ++ + + ++PV+VK RIG+DD DSY L DF+
Sbjct: 92 GCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKSVVDIPVTVKTRIGIDDQDSYEFLTDFV 150
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+ +
Sbjct: 151 SIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKQDFSHLTIAINGGVKS 210
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +A
Sbjct: 211 LEEAKEHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSTAPVKKRSEIVEEMYPYIEAQ 268
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSV 244
L ++ + + +L F + PG ++R + L++ + IP +
Sbjct: 269 LA----KGAYLGHISRHMLGLFQNMPGARQWRRHISENAHKPGSGLEVLQDALAKIPKEL 324
>gi|345872216|ref|ZP_08824154.1| TIM-barrel protein, yjbN family [Thiorhodococcus drewsii AZ1]
gi|343919297|gb|EGV30047.1| TIM-barrel protein, yjbN family [Thiorhodococcus drewsii AZ1]
Length = 330
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 123/217 (56%), Gaps = 14/217 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P V E + + ++PV+VK RIG+DD DSY +L DF+
Sbjct: 89 GCPSDRVQ-NGRFGACLMAEPGLVAECVKAMKDVVSIPVTVKTRIGIDDRDSYEELVDFV 147
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+ + I+H+RKA L+G+SP ENR IPPL+Y+ L RDFPDL +NGGI T
Sbjct: 148 -GAQAEAGCDAIIVHARKAWLSGLSPRENRDIPPLRYDVALRLKRDFPDLPMAVNGGIKT 206
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+DE L + VM+GR AYQNPW L D I+G + R QV++ + Y +
Sbjct: 207 LDEAAEFLTQ-LDGVMIGREAYQNPW-ILAEADRRIFGDDRAPPDRFQVLDDFIRYAERE 264
Query: 185 L--GT-YGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK 218
L GT G H+ L F ++PG ++R+
Sbjct: 265 LAQGTPLGTMSRHI-------LGLFQAQPGARAWRRQ 294
>gi|312965642|ref|ZP_07779871.1| tRNA-dihydrouridine synthase A [Escherichia coli 2362-75]
gi|417230595|ref|ZP_12032092.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0959]
gi|417758551|ref|ZP_12406606.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2B]
gi|418999881|ref|ZP_13547451.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1A]
gi|419004949|ref|ZP_13552451.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1B]
gi|419010602|ref|ZP_13558003.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1C]
gi|419011206|ref|ZP_13558576.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC1D]
gi|419021249|ref|ZP_13568540.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1E]
gi|419026721|ref|ZP_13573927.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC2A]
gi|419031864|ref|ZP_13578996.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2C]
gi|419037570|ref|ZP_13584636.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2D]
gi|419042558|ref|ZP_13589567.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2E]
gi|419297634|ref|ZP_13839663.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11B]
gi|419342682|ref|ZP_13884128.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12E]
gi|444972304|ref|ZP_21289626.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1793]
gi|312289616|gb|EFR17507.1| tRNA-dihydrouridine synthase A [Escherichia coli 2362-75]
gi|377838052|gb|EHU03178.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1A]
gi|377838136|gb|EHU03260.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1C]
gi|377840340|gb|EHU05413.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1B]
gi|377855260|gb|EHU20133.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1E]
gi|377856032|gb|EHU20893.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC2A]
gi|377864740|gb|EHU29532.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC1D]
gi|377869597|gb|EHU34308.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2B]
gi|377871003|gb|EHU35671.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2C]
gi|377872882|gb|EHU37524.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2D]
gi|377885003|gb|EHU49509.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2E]
gi|378137427|gb|EHW98703.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11B]
gi|378181451|gb|EHX42122.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12E]
gi|386205848|gb|EII10355.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0959]
gi|444574947|gb|ELV51205.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1793]
Length = 345
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|398349670|ref|ZP_10534373.1| tRNA-dihydrouridine synthase A [Leptospira broomii str. 5399]
Length = 341
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 137/249 (55%), Gaps = 11/249 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS KV G FG LM DPK V + ++ + + +PV+VKCRIG+ D L +
Sbjct: 97 NVGCPSDKVQ-EGNFGACLMGDPKRVSDCIAAMNSAVRLPVTVKCRIGIPGKDRIEDLLE 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS TR IH+R A+L G+SPA+NRT+PPL+Y+ Y + R+FP+L LNGG+
Sbjct: 156 FVRTVSEAGATR-ITIHARIAILEGLSPAQNRTVPPLRYDDVYEVKRNFPNLKLELNGGV 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D + L K VM+GRAAY+NP + VD +G TRR++ + Q Y
Sbjct: 215 RTLDIASEHLTK-VDGVMIGRAAYENP-FLFSTVDQRFFGERKIRSTRREIFHQMQEYIQ 272
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-KADAAFQTCKTVKSFLEETIVAIP 241
T +P +++ LL FH G+ +++R + Q T + L + + +IP
Sbjct: 273 K--RTEEGEKPS--RILRHLLGAFHEVRGSRIYRRILTEGMHQNPPT--TLLRDALASIP 326
Query: 242 DSVLDSPIE 250
LD ++
Sbjct: 327 SEFLDQKLD 335
>gi|419337329|ref|ZP_13878832.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12D]
gi|378178252|gb|EHX39021.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12D]
Length = 313
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 79 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 138 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 198 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 255
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 256 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 286
>gi|194426795|ref|ZP_03059348.1| tRNA-dihydrouridine synthase A [Escherichia coli B171]
gi|194415131|gb|EDX31400.1| tRNA-dihydrouridine synthase A [Escherichia coli B171]
gi|195183268|dbj|BAG66809.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H-]
Length = 345
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|407069817|ref|ZP_11100655.1| tRNA-dihydrouridine synthase A [Vibrio cyclitrophicus ZF14]
Length = 326
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 122/213 (57%), Gaps = 7/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P+ V + +S + T++P++VK RIG+DD DSY L F+
Sbjct: 92 GCPSDRVQ-NGRFGACLMAEPELVADCVSAMKEVTDIPITVKTRIGIDDQDSYEFLTKFV 150
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS F IH+RKA L+G+SP ENR IPPL Y+ Y + +DF DL +NGG+ T
Sbjct: 151 STVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYDRAYQIKKDFSDLVIAVNGGVTT 210
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ L+ VM+GR AY +P + L VD I+G + R QVVE+ Y +
Sbjct: 211 LEQTKEHLQH-LDGVMIGREAYHSP-FILAEVDQQIFGLDTPIKKRSQVVEEMYPYIERE 268
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N + + + +L F S PG ++R
Sbjct: 269 L----SNGASLGHISRHMLGLFQSMPGARQWRR 297
>gi|194432327|ref|ZP_03064615.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1012]
gi|416286014|ref|ZP_11648112.1| tRNA dihydrouridine synthase A [Shigella boydii ATCC 9905]
gi|417692540|ref|ZP_12341734.1| tRNA-dihydrouridine synthase A [Shigella boydii 5216-82]
gi|194419530|gb|EDX35611.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1012]
gi|320179045|gb|EFW54004.1| tRNA dihydrouridine synthase A [Shigella boydii ATCC 9905]
gi|332083541|gb|EGI88761.1| tRNA-dihydrouridine synthase A [Shigella boydii 5216-82]
Length = 339
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 105 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 164 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 224 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 281
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 282 HELSQGTY------LGHITRHMLGLFQGIPGARQWRR 312
>gi|417675401|ref|ZP_12324824.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 155-74]
gi|420350227|ref|ZP_14851584.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
965-58]
gi|332084336|gb|EGI89539.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 155-74]
gi|391262910|gb|EIQ21921.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
965-58]
Length = 345
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 HELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|401678882|ref|ZP_10810835.1| DusA Protein [Enterobacter sp. SST3]
gi|400213867|gb|EJO44800.1| DusA Protein [Enterobacter sp. SST3]
Length = 313
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 120/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 79 NVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 138 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 198 KSLEEAKAHLEH-MDGVMVGREAYQNPG-ILATVDREIFGIEGADTDPVAVVRAMYPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 256 REL----SNGTYLGHITRHMLGLFQGIPGARQWRR 286
>gi|419212642|ref|ZP_13755697.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8C]
gi|419229763|ref|ZP_13772590.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9A]
gi|419235432|ref|ZP_13778190.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9B]
gi|419240583|ref|ZP_13783281.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9C]
gi|419246276|ref|ZP_13788900.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9D]
gi|419252005|ref|ZP_13794566.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9E]
gi|419874397|ref|ZP_14396333.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9534]
gi|419884759|ref|ZP_14405636.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9545]
gi|419902433|ref|ZP_14421648.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9942]
gi|419909781|ref|ZP_14428319.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10026]
gi|420099908|ref|ZP_14611111.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9455]
gi|420107627|ref|ZP_14617949.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9553]
gi|424758029|ref|ZP_18185751.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CFSAN001630]
gi|378046718|gb|EHW09092.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8C]
gi|378066995|gb|EHW29122.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9A]
gi|378072023|gb|EHW34087.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9B]
gi|378078096|gb|EHW40087.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9C]
gi|378085455|gb|EHW47342.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9D]
gi|378088356|gb|EHW50210.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9E]
gi|388351112|gb|EIL16390.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9534]
gi|388352870|gb|EIL17953.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9545]
gi|388372678|gb|EIL36095.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10026]
gi|388373883|gb|EIL37107.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9942]
gi|394412068|gb|EJE86246.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9553]
gi|394422115|gb|EJE95516.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9455]
gi|421948823|gb|EKU05823.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CFSAN001630]
Length = 345
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNTQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|401761830|ref|YP_006576837.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400173364|gb|AFP68213.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 331
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 120/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 216 KSLEEAKAHLEH-MDGVMVGREAYQNPG-ILATVDREIFGVDGADTDPVAVVRAMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 274 REL----SNGTYLGHITRHMLGLFQGIPGARQWRR 304
>gi|323526215|ref|YP_004228368.1| hypothetical protein BC1001_1876 [Burkholderia sp. CCGE1001]
gi|323383217|gb|ADX55308.1| TIM-barrel protein, yjbN family [Burkholderia sp. CCGE1001]
Length = 333
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 124/217 (57%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y+ + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDVVSVPVTVKHRIGVDAVEDYSFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 155 FVGTIAQ-AGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQLEIVINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L+ VM+GR AY NP Y L VD YG+ + LTR QV K Y
Sbjct: 214 KTLDEVETHLQH-VDGVMLGREAYHNP-YLLADVDARFYGSSEAPLTREQVEAKLVEYCA 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A + GTY + + + L + E G ++R
Sbjct: 272 AEMARGTY------LGAITRHALGLYRGEAGARGWRR 302
>gi|419958727|ref|ZP_14474788.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
GS1]
gi|388606395|gb|EIM35604.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
GS1]
Length = 331
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 119/217 (54%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAHLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE A L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 216 KSLDEAKAHLEH-MDGVMVGREAYQNPG-ILATVDREIFGVEGADTDPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 274 RELSHGTY------LGHITRHMLGLFQGIPGARQWRR 304
>gi|28899501|ref|NP_799106.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus RIMD
2210633]
gi|260879420|ref|ZP_05891775.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AN-5034]
gi|260894695|ref|ZP_05903191.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus Peru-466]
gi|260902033|ref|ZP_05910428.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AQ4037]
gi|38604768|sp|Q87L85.1|DUSA_VIBPA RecName: Full=tRNA-dihydrouridine synthase A
gi|28807737|dbj|BAC60990.1| NifR3/Smm1 family protein [Vibrio parahaemolyticus RIMD 2210633]
gi|308087465|gb|EFO37160.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus Peru-466]
gi|308089701|gb|EFO39396.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AN-5034]
gi|308109416|gb|EFO46956.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AQ4037]
Length = 326
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 132/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + +VPV+VK RIG+DD DSY L D
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKEVVDVPVTVKTRIGIDDQDSYEFLTD 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 149 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKQDFSHLTIAINGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +
Sbjct: 209 KSLEEAKVHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSNAPVKKRSEIVEEMYPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A L ++ + + +L F + PG ++R + L++ + IP
Sbjct: 267 AQLA----KGAYLGHITRHMLGLFQNMPGARQWRRHISENAHKPGSGLEVLQDALAKIPK 322
Query: 243 SV 244
+
Sbjct: 323 EL 324
>gi|59710914|ref|YP_203690.1| tRNA-dihydrouridine synthase A [Vibrio fischeri ES114]
gi|59479015|gb|AAW84802.1| NifR3/Smm1 family protein [Vibrio fischeri ES114]
Length = 328
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 92 NVGCPSDRVQ-NGRFGACLMAEPDLVAECVAEMKAVVDIPVTVKTRIGIDDQDSYEFLTK 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V F IH+RKA L+G+SP ENR IPPL Y Y + +DFP L +NGGI
Sbjct: 151 FVSTVHEKGGCDQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKKDFPQLIIAVNGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L VM+GR AYQ+P Y L VD ++G+ RR++VE Y +
Sbjct: 211 KTLSEAKEHLEH-LDGVMIGREAYQSP-YLLAEVDQQLFGSDKPIKKRREIVESMYPYIE 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L N ++ + + +L F S PG ++R
Sbjct: 269 RQL----ENGAYLGHITRHMLGLFQSMPGARQWRR 299
>gi|423142707|ref|ZP_17130345.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
gi|379049298|gb|EHY67193.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
Length = 339
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 127/240 (52%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 105 NVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 164 FIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 224 KSLEEAKEHLRY-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVVVVRAMYPYIE 281
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R LE+ + + D
Sbjct: 282 REL----SQGAYLGHITRHMLGLFQGVPGARQWRRYLSENAHKAGADVRVLEQALKLVAD 337
>gi|340001601|ref|YP_004732485.1| hypothetical protein SBG_3688 [Salmonella bongori NCTC 12419]
gi|339514963|emb|CCC32734.1| conserved hypothetical protein [Salmonella bongori NCTC 12419]
Length = 381
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 129/243 (53%), Gaps = 11/243 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V +++ + ++PV+VK RIG+DD DSY LCD
Sbjct: 147 NVGCPSDRVQ-NGLFGACLMGNAQLVADSIKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 205
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 206 FINTVSGRGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTLSINGGI 265
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E L K VMVGR AYQNP L VD I+GA ++ + VV Y +
Sbjct: 266 KSLAEAKEHL-KYMDGVMVGREAYQNPG-ILAAVDREIFGADTAEVDPVAVVRAMYPYIE 323
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
L GTY + + + +L F PG ++R LE+ + +
Sbjct: 324 RELSQGTY------LGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADIRVLEQALQLV 377
Query: 241 PDS 243
D
Sbjct: 378 ADK 380
>gi|87122404|ref|ZP_01078285.1| hypothetical protein MED121_00605 [Marinomonas sp. MED121]
gi|86162379|gb|EAQ63663.1| hypothetical protein MED121_00605 [Marinomonas sp. MED121]
Length = 349
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 131/243 (53%), Gaps = 15/243 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS KV H G LM P+ V +AM + ++PV++K RIG+DD Y+ + D
Sbjct: 106 NAGCPSYKVQ-HSLIGAILMAHPEKVKDAMKAMQDACSIPVTLKHRIGLDDQQDYSIVRD 164
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V++ + T+ FI+H+R A+L G+SP +NR IPPLKY++ Y L +DFPDL +NGGI
Sbjct: 165 FIGDVAT-TGTQTFIVHARNAILAGLSPKQNREIPPLKYDFVYQLKKDFPDLEIIINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE L K VMVGR AY NPW L VD+ ++ R Q + + + +
Sbjct: 224 KTLDECEHHL-KHLDGVMVGREAYNNPW-ILSQVDSRLFDKEDQVQDRIQALRNFVPFVE 281
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
L NN + + + ++ F +PG F+R K DA+ K + E
Sbjct: 282 HRL----NNGERLSHLTRHIMGIFLGQPGGKQFRRYLSEQGHKKDASIDVLKQAIDLVTE 337
Query: 236 TIV 238
+
Sbjct: 338 QLT 340
>gi|260583380|ref|ZP_05851150.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae NT127]
gi|260093566|gb|EEW77484.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae NT127]
Length = 327
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 130/237 (54%), Gaps = 15/237 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCDFI
Sbjct: 98 GCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCDFI 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI T
Sbjct: 157 EKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYTRVYQLKRDFPHLTIAINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG +D A++ + +T + V Y +
Sbjct: 216 IEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVRSMLPYIEQQ 273
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 274 L----SQGIHLNHIVRHILGAFQNCKGARQWRRYLSENAFKQGAGIEVVETALSFVE 326
>gi|417439152|ref|ZP_12161938.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|353612375|gb|EHC64763.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
Length = 332
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 127/240 (52%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FIDTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA + VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTIDADPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|237728132|ref|ZP_04558613.1| tRNA-dihydrouridine synthase A [Citrobacter sp. 30_2]
gi|226910143|gb|EEH96061.1| tRNA-dihydrouridine synthase A [Citrobacter sp. 30_2]
Length = 331
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y+ Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYDRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VMVGR AYQNP L VD I+ A + VV Y +
Sbjct: 216 KSLEEAKIHLQH-MDGVMVGREAYQNPG-ILASVDREIFAATTEDTDPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + V + +L F PG ++R
Sbjct: 274 RELSKGTY------LGHVTRHMLGLFQGIPGARQWRR 304
>gi|15804641|ref|NP_290682.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EDL933]
gi|12519000|gb|AAG59247.1|AE005638_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
Length = 345
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFXGIPGARQWRR 318
>gi|145629754|ref|ZP_01785549.1| hypothetical protein CGSHi22121_00292 [Haemophilus influenzae
22.1-21]
gi|145632012|ref|ZP_01787761.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R3021]
gi|144977993|gb|EDJ87777.1| hypothetical protein CGSHi22121_00292 [Haemophilus influenzae
22.1-21]
gi|144982331|gb|EDJ89920.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R3021]
Length = 327
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 130/237 (54%), Gaps = 15/237 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + + + +PV+VK RIG+D+ DSY LCDFI
Sbjct: 98 GCPSDRVQ-NGMFGACLMAKADLVADCVEQMQGVVKIPVTVKTRIGIDELDSYEFLCDFI 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI T
Sbjct: 157 EKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQLKRDFPHLTIAINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG +D A++ + +T + V+ Y +
Sbjct: 216 IEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVQSMLPYIEQQ 273
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 274 L----SQGIHLNHIVRHILGAFQNCKGARQWRRYLSENAFKQGAGIEVVETALSFVE 326
>gi|374314399|ref|YP_005060828.1| tRNA-dihydrouridine synthase A [Serratia symbiotica str. 'Cinara
cedri']
gi|363988625|gb|AEW44816.1| tRNA-dihydrouridine synthase A [Serratia symbiotica str. 'Cinara
cedri']
Length = 328
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 128/215 (59%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V +++ + ++PV++K RIG+DD DSY LCD
Sbjct: 97 NVGCPSNRVQ-NGIFGACLMKKATLVADSIKAMNDAVSIPVTLKTRIGIDDRDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FIY VS+ F +H+RKALL+G++P +NR IPPL Y Y L +DFP L +NGGI
Sbjct: 156 FIYTVSNQGQCSMFTLHARKALLSGLNPKQNREIPPLDYLRVYRLKQDFPALNIIINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
NT++E + L+ VM+GRAAYQNP L VD+ ++G S + ++E Y +
Sbjct: 216 NTLEESSQHLQH-LDGVMMGRAAYQNPSILL-EVDSRLFGMHSVVKKKISIIESMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L ++G H+ + + +L FF + G+ ++R
Sbjct: 274 REL-SHGT---HLSHITRHILGFFQGDHGSRQWRR 304
>gi|335044657|ref|ZP_08537682.1| tRNA-dihydrouridine synthase A [Methylophaga aminisulfidivorans MP]
gi|333787903|gb|EGL53787.1| tRNA-dihydrouridine synthase A [Methylophaga aminisulfidivorans MP]
Length = 330
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 132/240 (55%), Gaps = 16/240 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V E ++ + N+PV+VK R+G+D+ DSY L D
Sbjct: 97 NVGCPSDRVQS-GSFGACLMAEPQLVAEGVAAMKNAVNIPVTVKTRLGIDEQDSYQFLTD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS+ + FI+H+RKA L G+SP ENR +PPL YE Y + +D+P+L +NGGI
Sbjct: 156 FIDAVSA-AGCETFILHARKAWLKGLSPKENRDVPPLDYERVYQIKKDYPELHIDINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSG-LTRRQVVEKYQIYG 181
+++ EV L K MVGRA Y +P Y L VD I+ S L+R +V+E Y
Sbjct: 215 HSLVEVQEHL-KHVDGTMVGRAIYHDP-YLLADVDNVIFNQRSDYILSRHEVIEAMLPY- 271
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKA-------DAAFQTCKTVKSFLE 234
I RP ++ + + LL F +PG ++R DA T + S ++
Sbjct: 272 --IEQRMKQGRP-LKSITRHLLGLFQGQPGARRWRRHLSENAHLPDAGIHTLQQALSLVD 328
>gi|389732527|ref|ZP_10189473.1| tRNA-dihydrouridine synthase A [Rhodanobacter sp. 115]
gi|388440416|gb|EIL96798.1| tRNA-dihydrouridine synthase A [Rhodanobacter sp. 115]
Length = 311
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 122/215 (56%), Gaps = 10/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P V + + + +VPV+VKCRIGVDD D Y L
Sbjct: 80 NVGCPSDRVQS-GRFGACLMYEPALVADCVKAMRDAVSVPVTVKCRIGVDDQDDYAGLQH 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F + + ++H+RKA L G+SP ENR IPPL YE Y L R+FP L +NGG+
Sbjct: 139 FTETMLE-AGVGVLVVHARKAWLKGLSPKENREIPPLDYERVYRLKREFPQLVVAINGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
TV++V A L + VM+GRAAY +PW L ++TA+YG P R V+++ + Y +
Sbjct: 198 TTVEQVRAHLAQ-VDGVMLGRAAYHDPWL-LARLETALYGEPLP--EREAVLQRLRPYVE 253
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L G H + + LL + EPG F+R
Sbjct: 254 AELAR-GTALKH---ITRHLLGLYQGEPGARGFRR 284
>gi|295095415|emb|CBK84505.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 331
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 119/217 (54%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAHLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE A L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 216 TSLDEAKAHLEH-MDGVMVGREAYQNPG-ILATVDREIFGVDGADTDPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 274 RELSHGTY------LGHITRHMLGLFQGIPGARQWRR 304
>gi|410694288|ref|YP_003624910.1| tRNA-dihydrouridine synthase A [Thiomonas sp. 3As]
gi|294340713|emb|CAZ89105.1| tRNA-dihydrouridine synthase A [Thiomonas sp. 3As]
Length = 352
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 125/217 (57%), Gaps = 9/217 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI--AANTNVPVSVKCRIGVDDHDSYNQL 60
+CGCPSP+V G FG LM +P V ++++ + A + +PV+VK RIGVD DSY +
Sbjct: 89 NCGCPSPRVQ-RGAFGACLMAEPSRVRDSVAAMVEAVSGTIPVTVKHRIGVDHEDSYGFV 147
Query: 61 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 120
DF+ VS FI+H+R A L+G+SP ENR IPPL+ E+ L RDFP L F LNG
Sbjct: 148 RDFVGTVSQ-GGCETFIVHARSAWLDGLSPKENRDIPPLRPEFILQLRRDFPALAFVLNG 206
Query: 121 GINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
GI T ++ L + VMVGRAAYQ+PW +L D G+ S R++VE+
Sbjct: 207 GIKTGQQIGEWLPQ-VSGVMVGRAAYQDPW-SLATWDREFLGSADSAAPEREIVEEQM-- 262
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A + + H + + + +L+ + +PG +++
Sbjct: 263 -GAYIAAWKAKGLHPQAITRHMLNLWKGQPGGRRWRQ 298
>gi|167855851|ref|ZP_02478602.1| tRNA-dihydrouridine synthase A [Haemophilus parasuis 29755]
gi|167853001|gb|EDS24264.1| tRNA-dihydrouridine synthase A [Haemophilus parasuis 29755]
Length = 323
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 131/238 (55%), Gaps = 20/238 (8%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + + ++PV+VK RIG+DD DSY LCDFI
Sbjct: 95 GCPSDRVQ-NGMFGACLMGKADLVARCVEAMKKEVSIPVTVKHRIGIDDLDSYEFLCDFI 153
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
K+ FI+H+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI T
Sbjct: 154 EKIQPY--CNDFIVHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLKISINGGIKT 211
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L + VMVGR AYQNP LG++D ++ + +T +Q VEK Y +
Sbjct: 212 IEEIKHHL-QFVDGVMVGREAYQNP-SLLGYIDQELFDPNADIVTPKQAVEKMLPYIEQQ 269
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ +++ +L F + G ++R K A + + SFL
Sbjct: 270 LSQGVYLNH------IVRHILGAFQNCKGARRWRRHLSENACKQGAGVEVVEQALSFL 321
>gi|418708793|ref|ZP_13269593.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418723434|ref|ZP_13282273.1| tRNA dihydrouridine synthase A [Leptospira interrogans str. UI
12621]
gi|421126649|ref|ZP_15586879.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421135935|ref|ZP_15596051.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|409963134|gb|EKO26863.1| tRNA dihydrouridine synthase A [Leptospira interrogans str. UI
12621]
gi|410019912|gb|EKO86721.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410435874|gb|EKP85000.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410770723|gb|EKR45936.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
Length = 329
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 133/244 (54%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + ++P++VKCRIG+ +++ LC
Sbjct: 80 NVGCPSDRVR-EGNFGACLMETPEKVAELTFAMDTSVSIPITVKCRIGIPGKETFEDLCK 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V R FI+H+R A+L G++P +NR +PPL Y Y +L ++FPDL +NGGI
Sbjct: 139 FIECVRQTGVQR-FIVHARIAILGGLTPTQNRQVPPLHYTYVESLKKEFPDLLIEINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L K VM+GRAAY+ P Y VD+ +G L+RR+++ + + Y +
Sbjct: 198 RTITSIRERLEKN-DGVMIGRAAYETP-YLFSEVDSLFFGENLPPLSRREILLRMKDYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH E G F++ + + K L + I I +
Sbjct: 256 EVILKEKNGKPH--HALRHMLGLFHGEKGARNFRKILTEGMYSGYS-KDLLSKAIQEISN 312
Query: 243 SVLD 246
LD
Sbjct: 313 DSLD 316
>gi|345297462|ref|YP_004826820.1| yjbN family TIM-barrel protein [Enterobacter asburiae LF7a]
gi|345091399|gb|AEN63035.1| TIM-barrel protein, yjbN family [Enterobacter asburiae LF7a]
Length = 331
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 120/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVAGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 216 KSLEEAKAHLGH-MDGVMVGREAYQNPG-ILATVDREIFGVEGADTDPVSVVRAMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 274 REL----SNGTYLGHITRHMLGLFQGIPGARQWRR 304
>gi|365101882|ref|ZP_09332486.1| tRNA-dihydrouridine synthase A [Citrobacter freundii 4_7_47CFAA]
gi|363646657|gb|EHL85894.1| tRNA-dihydrouridine synthase A [Citrobacter freundii 4_7_47CFAA]
Length = 332
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y+ Y L RDFP LT ++NGGI
Sbjct: 157 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYDRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VMVGR AYQNP L VD I+ A + VV Y +
Sbjct: 217 KSLEEAKIHLQH-MDGVMVGREAYQNPG-ILASVDREIFSAATEDTDPVAVVRAMYPYIE 274
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + V + +L F PG ++R
Sbjct: 275 RELSKGTY------LGHVTRHMLGLFQGIPGARQWRR 305
>gi|456967182|gb|EMG08603.1| dihydrouridine synthase [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 328
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 133/244 (54%), Gaps = 7/244 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + ++P++VKCRIG+ +++ LC
Sbjct: 79 NVGCPSDRVR-EGNFGACLMETPEKVAELTFAMDTSVSIPITVKCRIGIPGKETFEDLCK 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V R FI+H+R A+L G++P +NR +PPL Y Y +L ++FPDL +NGGI
Sbjct: 138 FIECVRQTGVQR-FIVHARIAILGGLTPTQNRQVPPLHYTYVESLKKEFPDLLIEINGGI 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L K VM+GRAAY+ P Y VD+ +G L+RR+++ + + Y +
Sbjct: 197 RTITSIRERLEKN-DGVMIGRAAYETP-YLFSEVDSLFFGENLPPLSRREILLRMKDYIE 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH E G F++ + + K L + I I +
Sbjct: 255 EVILKEKNGKPH--HALRHMLGLFHGEKGARNFRKILTEGMYSGYS-KDLLSKAIQEISN 311
Query: 243 SVLD 246
LD
Sbjct: 312 DSLD 315
>gi|219871369|ref|YP_002475744.1| tRNA-dihydrouridine synthase A [Haemophilus parasuis SH0165]
gi|219691573|gb|ACL32796.1| tRNA-dihydrouridine synthase A [Haemophilus parasuis SH0165]
Length = 323
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 131/238 (55%), Gaps = 20/238 (8%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + + ++PV+VK RIG+DD DSY LCDFI
Sbjct: 95 GCPSDRVQ-NGMFGACLMGKADLVARCVEAMKKEVSIPVTVKHRIGIDDLDSYEFLCDFI 153
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
K+ FI+H+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI T
Sbjct: 154 EKIQPY--CNDFIVHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLKMSINGGIKT 211
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L + VMVGR AYQNP LG++D ++ + +T +Q VEK Y +
Sbjct: 212 IEEIKHHL-QFVDGVMVGREAYQNP-SLLGYIDRELFDPNAEIVTPKQAVEKMLPYIEQQ 269
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ +++ +L F + G ++R K A + + SFL
Sbjct: 270 LSQGVYLNH------IVRHILGAFQNCKGARQWRRHLSENACKQGAGVEVVEQALSFL 321
>gi|148826732|ref|YP_001291485.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae PittEE]
gi|229847414|ref|ZP_04467514.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 7P49H1]
gi|148716892|gb|ABQ99102.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae PittEE]
gi|229809652|gb|EEP45378.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 7P49H1]
gi|309751771|gb|ADO81755.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R2866]
Length = 327
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 131/239 (54%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FIIH+RKA L+G+S ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 155 FIEKVQG-KGCQEFIIHARKAWLSGLSAKENREIPPLDYARVYQLKRDFPHLTIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LG +D A++ + +T + V+ Y +
Sbjct: 214 KTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVQSMLPYIE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L N H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 272 QQL----NQGIHLNHIVRHMLGAFQNCKGARQWRRYLSENAFKQGAGVEVIETALSFVE 326
>gi|293417553|ref|ZP_06660175.1| tRNA-dihydrouridine synthase A [Escherichia coli B185]
gi|291430271|gb|EFF03269.1| tRNA-dihydrouridine synthase A [Escherichia coli B185]
Length = 345
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSYTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|296136585|ref|YP_003643827.1| yjbN family TIM-barrel protein [Thiomonas intermedia K12]
gi|295796707|gb|ADG31497.1| TIM-barrel protein, yjbN family [Thiomonas intermedia K12]
Length = 349
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 125/217 (57%), Gaps = 9/217 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI--AANTNVPVSVKCRIGVDDHDSYNQL 60
+CGCPSP+V G FG LM +P V ++++ + A + +PV+VK RIGVD DSY +
Sbjct: 89 NCGCPSPRVQ-RGAFGACLMAEPSRVRDSVAAMVEAVSGTIPVTVKHRIGVDHEDSYGFV 147
Query: 61 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 120
DF+ VS FI+H+R A L+G+SP ENR IPPL+ E+ L RDFP L F LNG
Sbjct: 148 RDFVGTVSQ-GGCETFIVHARSAWLDGLSPKENRDIPPLRPEFILQLRRDFPALAFVLNG 206
Query: 121 GINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
GI T ++ L + VMVGRAAYQ+PW +L D G+ S R++VE+
Sbjct: 207 GIKTEQQIREWLPQ-VSGVMVGRAAYQDPW-SLSTWDREFLGSADSAAPEREIVEEQM-- 262
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A + + H + + + +L+ + +PG +++
Sbjct: 263 -GAYIAAWKVKGLHPQAITRHMLNLWKGQPGGRRWRQ 298
>gi|205355015|ref|YP_002228816.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|375125917|ref|ZP_09771081.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|445131990|ref|ZP_21381991.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|205274796|emb|CAR39855.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326630167|gb|EGE36510.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|444849429|gb|ELX74540.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
Length = 332
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 127/240 (52%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FIDTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR MVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGAMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|197334068|ref|YP_002155065.1| tRNA-dihydrouridine synthase A [Vibrio fischeri MJ11]
gi|197315558|gb|ACH65005.1| tRNA-dihydrouridine synthase A [Vibrio fischeri MJ11]
Length = 328
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 92 NVGCPSDRVQ-NGRFGACLMAEPDLVAECVAEMKAVVDIPVTVKTRIGIDDQDSYEFLTK 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V F IH+RKA L+G+SP ENR IPPL Y Y + +DFP L +NGGI
Sbjct: 151 FVSTVHEKGGCDQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKKDFPQLIIAVNGGI 210
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+ E L AH VM+GR AYQ+P Y L VD ++G+ RR++VE Y
Sbjct: 211 KTLAEAKEHL---AHLDGVMIGREAYQSP-YLLAEVDQQLFGSDKPIKKRREIVESMYPY 266
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ L N ++ + + +L F S PG ++R
Sbjct: 267 IERQL----ENGAYLGHITRHMLGLFQSMPGARQWRR 299
>gi|161505294|ref|YP_001572406.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|160866641|gb|ABX23264.1| hypothetical protein SARI_03435 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 345
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 127/242 (52%), Gaps = 11/242 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP L ++NGGI
Sbjct: 170 FIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLNMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 230 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
L GTY + + + +L F PG ++R LE+ + +
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADIGVLEQALKLV 341
Query: 241 PD 242
D
Sbjct: 342 AD 343
>gi|432452323|ref|ZP_19694574.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE193]
gi|433035989|ref|ZP_20223668.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE112]
gi|430976481|gb|ELC93347.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE193]
gi|431544850|gb|ELI19661.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE112]
Length = 345
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSYTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|421727638|ref|ZP_16166798.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca M5al]
gi|410371607|gb|EKP26328.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca M5al]
Length = 331
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 125/240 (52%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y +Y L RDFP LT +NGGI
Sbjct: 156 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPLFYQLKRDFPHLTMAINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L VMVGR AYQNP L VD I+G VV Y +
Sbjct: 216 KSLEEAKLHLEH-MDGVMVGREAYQNPG-ILAAVDREIFGVDGVDADPVSVVRAMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L +N ++ V + +L F PG ++R + LE+ + + D
Sbjct: 274 REL----SNGTYLGHVTRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEQALKLVAD 329
>gi|319897830|ref|YP_004136027.1| tRNA-dihydrouridine synthase a [Haemophilus influenzae F3031]
gi|317433336|emb|CBY81713.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae F3031]
Length = 285
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 132/239 (55%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 54 NVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCD 112
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 113 FIEKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQLKRDFPHLTIAINGGI 171
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++++ L+ VMVGR AYQNP LG +D A++ + +T + V+ Y +
Sbjct: 172 KTIEKMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVQSMLPYIE 229
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 230 QQL----SQGIHLNHIVRHMLGAFQNCKGARQWRRYLSENAFKQGAGVEVIETALSFVE 284
>gi|33151604|ref|NP_872957.1| tRNA-dihydrouridine synthase A [Haemophilus ducreyi 35000HP]
gi|38604736|sp|Q7VNV2.1|DUSA_HAEDU RecName: Full=tRNA-dihydrouridine synthase A
gi|33147824|gb|AAP95346.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 323
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 124/217 (57%), Gaps = 13/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV++K RIG+D DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGMFGACLMANADLVADCIKAMQDVVDIPVTIKHRIGIDTLDSYAFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI K+ S + FI+H+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI
Sbjct: 152 FIDKIQPYS--QDFIVHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPQLNISINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE+ L K VMVGR AYQNP LG +D ++ +T R VE Y +
Sbjct: 210 KTIDEIKQHLTK-VDGVMVGREAYQNP-ALLGEIDQQLFDQNQPLITARIAVENMLPYIE 267
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G Y N+ +++ +L F + G ++R
Sbjct: 268 QQLSKGVYLNH------IVRHMLGAFQNCKGARQWRR 298
>gi|422829122|ref|ZP_16877290.1| tRNA-dihydrouridine synthase A [Escherichia coli B093]
gi|371610279|gb|EHN98808.1| tRNA-dihydrouridine synthase A [Escherichia coli B093]
Length = 345
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLKEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|423685022|ref|ZP_17659830.1| tRNA-dihydrouridine synthase A [Vibrio fischeri SR5]
gi|371496069|gb|EHN71663.1| tRNA-dihydrouridine synthase A [Vibrio fischeri SR5]
Length = 328
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 92 NVGCPSDRVQ-NGRFGACLMAEPDLVAECVAEMKAVVDIPVTVKTRIGIDDQDSYEFLTK 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V F IH+RKA L+G+SP ENR IPPL Y Y + +DFP L +NGGI
Sbjct: 151 FVSTVHEKGGCDQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKKDFPQLIIAVNGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L VM+GR AYQ+P Y L VD ++G+ RR++VE Y +
Sbjct: 211 KTLAEAKEHLEH-LDGVMIGREAYQSP-YLLAEVDQQLFGSDKPIKKRREIVESMYPYIE 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L N ++ + + +L F S PG ++R
Sbjct: 269 RQL----ENGAYLGHITRHMLGLFQSMPGARQWRR 299
>gi|260779457|ref|ZP_05888347.1| tRNA dihydrouridine synthase A [Vibrio coralliilyticus ATCC
BAA-450]
gi|260604266|gb|EEX30570.1| tRNA dihydrouridine synthase A [Vibrio coralliilyticus ATCC
BAA-450]
Length = 315
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 120/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + +VPV+VK RIG+DD DSY L D
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPLLVAECVAAMRDVVDVPVTVKTRIGIDDQDSYEFLTD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS + F IH+RKA L+G+SP ENR IPPL Y Y L +DF L +NGG+
Sbjct: 138 FVSIVSEKGGSDQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFAHLNIAINGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+ L VMVGR AYQNP Y L VD I+G R QVV++ Y +
Sbjct: 198 KTLDDTKEHLTH-LDGVMVGREAYQNP-YILAEVDQQIFGLDKPVKKRTQVVQEMYPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ L ++ + + +L F + PG ++R
Sbjct: 256 SQL----EKGAYLGHITRHMLGLFQNMPGARQWRR 286
>gi|373468157|ref|ZP_09559439.1| tRNA dihydrouridine synthase A [Haemophilus sp. oral taxon 851 str.
F0397]
gi|371756415|gb|EHO45225.1| tRNA dihydrouridine synthase A [Haemophilus sp. oral taxon 851 str.
F0397]
Length = 285
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 131/239 (54%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 54 NVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCD 112
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 113 FIEKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQLKRDFPHLTIAINGGI 171
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LG +D A++ + +T + V Y +
Sbjct: 172 KTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHKAVLSMLPYIE 229
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 230 QEL----SQGIHLNHIVRHMLGAFQNCKGARQWRRYLSENAFKQGAGIEVVETALSFVE 284
>gi|385209824|ref|ZP_10036692.1| tRNA dihydrouridine synthase A [Burkholderia sp. Ch1-1]
gi|385182162|gb|EIF31438.1| tRNA dihydrouridine synthase A [Burkholderia sp. Ch1-1]
Length = 333
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 123/217 (56%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSVPVTVKHRIGVDAVEEYGFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 155 FVGTIAD-AGCNVFIVHARNAILKGLSPKENREIPPLKYDYAYQLKRDFPHLEIIINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L+ VM+GR AY NP Y L VD YG+ S LTR QV K Y
Sbjct: 214 KTLDEVETHLQH-VDGVMLGREAYHNP-YRLADVDARFYGSTDSPLTREQVEAKLIDYCA 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A + GTY + + + L + E G ++R
Sbjct: 272 AEMARGTY------LGAITRHALGLYRGEAGARGWRR 302
>gi|283787222|ref|YP_003367087.1| tRNA-dihydrouridine synthase A [Citrobacter rodentium ICC168]
gi|282950676|emb|CBG90350.1| putative tRNA-dihydrouridine synthase A [Citrobacter rodentium
ICC168]
Length = 345
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRNTVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FIDTVSGHGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E A L VMVGR AYQNP L VD I+G S VV Y +
Sbjct: 230 KSLAEAKAHLEH-MDGVMVGREAYQNPG-ILASVDREIFGVDSPDADPVAVVRAMYPYIE 287
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 288 REL----SNGTYLGHITRHMLGLFQGIPGARQWRR 318
>gi|145639381|ref|ZP_01794986.1| hypothetical protein CGSHiII_04387 [Haemophilus influenzae PittII]
gi|145271428|gb|EDK11340.1| hypothetical protein CGSHiII_04387 [Haemophilus influenzae PittII]
Length = 327
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 130/237 (54%), Gaps = 15/237 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCDFI
Sbjct: 98 GCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCDFI 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + FIIH+RKA L+G+SP ENR IPPL Y Y L DFP LT +NGGI T
Sbjct: 157 EKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQLKHDFPHLTIAINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG +D A++ + +T + VE Y +
Sbjct: 216 IEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVESMLPYIEQQ 273
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 274 L----SQGIHLNHIVRHMLGAFQNCKGARQWRRYLSENAFKQGAGVEVVETALSFVE 326
>gi|170769561|ref|ZP_02904014.1| tRNA-dihydrouridine synthase A [Escherichia albertii TW07627]
gi|170121618|gb|EDS90549.1| tRNA-dihydrouridine synthase A [Escherichia albertii TW07627]
Length = 331
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMAINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 216 KSLEEAKAHLQY-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 274 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 304
>gi|387872936|ref|YP_005804323.1| tRNA-dihydrouridine synthase A [Erwinia pyrifoliae DSM 12163]
gi|283480036|emb|CAY75952.1| tRNA-dihydrouridine synthase A [Erwinia pyrifoliae DSM 12163]
Length = 332
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 129/244 (52%), Gaps = 14/244 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + +VPV+VK RIG+DD DSY LCD
Sbjct: 94 NVGCPSDRVQ-NGRFGACLMGEAQLVADGIKAMRDVVSVPVTVKTRIGIDDQDSYEFLCD 152
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI+ VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGG+
Sbjct: 153 FIHTVSEQGGCEVFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTLSINGGV 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E L+ VM+GR AYQNP L VD ++G S VV Y +
Sbjct: 213 KSLAEAKIHLQY-LDGVMMGREAYQNPGL-LAQVDRELFGCTSPAADPIAVVRSMYPYIE 270
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
L N ++ V + +L F PG ++R KA A + + S + E
Sbjct: 271 RELA----NGTYLGHVTRHMLGLFQGIPGARQWRRYLSENAHKAGAGIEVVEKALSMVAE 326
Query: 236 TIVA 239
+ A
Sbjct: 327 KVPA 330
>gi|455644996|gb|EMF24086.1| tRNA-dihydrouridine synthase A [Citrobacter freundii GTC 09479]
Length = 332
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y+ Y L RDFP LT ++NGGI
Sbjct: 157 FINTVSGNGECEMFIIHARKAWLSGLSPKENREIPPLDYDRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VMVGR AYQNP L VD I+ A + VV Y +
Sbjct: 217 KSLEEAKIHLQH-MDGVMVGREAYQNPG-ILASVDREIFAAATEDADPVAVVRAMYPYIE 274
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + V + +L F PG ++R
Sbjct: 275 RELSKGTY------LGHVTRHMLGLFQGIPGARQWRR 305
>gi|395231244|ref|ZP_10409536.1| tRNA-dihydrouridine synthase A [Citrobacter sp. A1]
gi|424731198|ref|ZP_18159785.1| trna-dihydrouridine synthase a [Citrobacter sp. L17]
gi|394715022|gb|EJF20892.1| tRNA-dihydrouridine synthase A [Citrobacter sp. A1]
gi|422894384|gb|EKU34197.1| trna-dihydrouridine synthase a [Citrobacter sp. L17]
Length = 332
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y+ Y L RDFP LT ++NGGI
Sbjct: 157 FINTVSGNGECEMFIIHARKAWLSGLSPKENREIPPLDYDRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VMVGR AYQNP L VD I+ A + VV Y +
Sbjct: 217 KSLEEAKIHLQH-MDGVMVGREAYQNPG-ILASVDREIFAATTEDTDPVTVVRAMYPYIE 274
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + V + +L F PG ++R
Sbjct: 275 RELSKGTY------LGHVTRHMLGLFQGIPGARQWRR 305
>gi|421494448|ref|ZP_15941796.1| DUSA [Morganella morganii subsp. morganii KT]
gi|455737888|ref|YP_007504154.1| tRNA dihydrouridine synthase A [Morganella morganii subsp. morganii
KT]
gi|400191310|gb|EJO24458.1| DUSA [Morganella morganii subsp. morganii KT]
gi|455419451|gb|AGG29781.1| tRNA dihydrouridine synthase A [Morganella morganii subsp. morganii
KT]
Length = 348
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 120/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + ++ + T++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNASLVADCVAAMRDVTDIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ F+IH+RKA L+G+SP ENR IPPL Y Y L +DFP LT LNGGI
Sbjct: 170 FVGTVAERGGCEMFVIHARKAWLSGLSPKENREIPPLDYPRVYQLKKDFPHLTMALNGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VMVGR AYQNP L VD A++ A VE Y +
Sbjct: 230 KTLEEAKTHLQY-MDGVMVGREAYQNP-SILAQVDNALFDAALPVTDTVAAVEAMYPYIE 287
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L T G H + + +L F PG ++R
Sbjct: 288 AELAT-GTYLGH---ITRHMLGIFQGIPGARQWRR 318
>gi|383816678|ref|ZP_09972071.1| yjbN family TIM-barrel protein [Serratia sp. M24T3]
gi|383294485|gb|EIC82826.1| yjbN family TIM-barrel protein [Serratia sp. M24T3]
Length = 351
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 123/215 (57%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGQAALVADGIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +VS FIIH+RKA L+G+SP ENR +PPL Y Y L RDFP LT +NGGI
Sbjct: 170 FVQQVSERGGCDTFIIHARKAWLSGLSPKENREVPPLDYPRVYQLKRDFPHLTIAINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L+ VM+GR AYQNP L VD ++G+ S LT +V+ Y +
Sbjct: 230 KSLEDAKQHLQH-MDGVMIGREAYQNPSMLL-DVDRELFGSQSPVLTGPEVIRALYPYIE 287
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ L +N ++ + + +L F PG ++R
Sbjct: 288 SEL----SNGTYLGHITRHILGIFQGIPGARQWRR 318
>gi|260773671|ref|ZP_05882587.1| tRNA-dihydrouridine synthase [Vibrio metschnikovii CIP 69.14]
gi|260612810|gb|EEX38013.1| tRNA-dihydrouridine synthase [Vibrio metschnikovii CIP 69.14]
Length = 335
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 121/215 (56%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L
Sbjct: 98 NVGCPSDRVQ-NGKFGACLMAEPQLVADCVAAMREVVDIPVTVKTRIGIDDQDSYEFLTR 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DFP LT +NGG+
Sbjct: 157 FVQLVSEQGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKQDFPHLTIAINGGV 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ EV L+ VMVGR AYQNP Y L D I+G R QVV++ Y +
Sbjct: 217 KSLTEVLDHLQH-LDGVMVGREAYQNP-YLLAEADQQIFGLDKPIKKRSQVVQEMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L T G H + + +L F S PG ++R
Sbjct: 275 QQL-TQGAYLGH---ITRHMLGLFQSMPGARQWRR 305
>gi|188494852|ref|ZP_03002122.1| tRNA-dihydrouridine synthase A [Escherichia coli 53638]
gi|188490051|gb|EDU65154.1| tRNA-dihydrouridine synthase A [Escherichia coli 53638]
Length = 347
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 113 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 171
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 172 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 231
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ VV Y +
Sbjct: 232 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDIDADPVAVVRAMYPYIE 289
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 290 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 320
>gi|424044986|ref|ZP_17782557.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-03]
gi|408887165|gb|EKM25800.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-03]
Length = 315
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 132/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDVVDIPVTVKTRIGIDDQDSYEFLTD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 138 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLTIAINGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +
Sbjct: 198 KSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSNAPVKKRSEIVEEMYPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A L ++ + + +L F + PG ++R + L++ + IP
Sbjct: 256 AQLA----KGAYLGHISRHMLGLFQNMPGARQWRRHISENAHKPGSGLEVLQDALAKIPK 311
Query: 243 SV 244
+
Sbjct: 312 EL 313
>gi|296100676|ref|YP_003610822.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295055135|gb|ADF59873.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 331
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 127/242 (52%), Gaps = 11/242 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVAGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
++DE L AH VMVGR AYQNP L VD I+G + VV Y
Sbjct: 216 KSLDEAKTHL---AHMDGVMVGREAYQNPG-ILTTVDREIFGVEGADTDPVAVVRAMYPY 271
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
+ L +N ++ + + +L F PG ++R LE+ + +
Sbjct: 272 IEREL----SNGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADIEVLEQALRLV 327
Query: 241 PD 242
D
Sbjct: 328 AD 329
>gi|259909942|ref|YP_002650298.1| tRNA-dihydrouridine synthase A [Erwinia pyrifoliae Ep1/96]
gi|224965564|emb|CAX57096.1| tRNA-dihydrouridine synthase A [Erwinia pyrifoliae Ep1/96]
Length = 331
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 128/242 (52%), Gaps = 14/242 (5%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + + V + + + +VPV+VK RIG+DD DSY LCDFI
Sbjct: 95 GCPSDRVQ-NGRFGACLMGEAQLVADGIKAMRDVVSVPVTVKTRIGIDDQDSYEFLCDFI 153
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+ VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGG+ +
Sbjct: 154 HTVSEQGGCEVFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTLSINGGVKS 213
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+ E L+ VM+GR AYQNP L VD ++G S VV Y +
Sbjct: 214 LAEAKIHLQY-LDGVMMGREAYQNPGL-LAQVDRELFGCTSPAADPIAVVRSMYPYIERE 271
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEETI 237
L N ++ V + +L F PG ++R KA A + + S + E +
Sbjct: 272 LA----NGTYLGHVTRHMLGLFQGIPGARQWRRYLSENAHKAGAGIEVVEKALSMVAEKV 327
Query: 238 VA 239
A
Sbjct: 328 PA 329
>gi|417841940|ref|ZP_12488036.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M19501]
gi|341948036|gb|EGT74673.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M19501]
Length = 327
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 131/239 (54%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 155 FIEKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQLKRDFPHLTIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LG +D A++ + +T + V+ Y +
Sbjct: 214 KTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVQSMLPYIE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F + G ++R K A + +T F+E
Sbjct: 272 QQL----SQGIHLNHIVRHMLGAFQNCKGARQWRRYLSENAFKQGAGVEVVETALHFIE 326
>gi|297520781|ref|ZP_06939167.1| tRNA-dihydrouridine synthase A [Escherichia coli OP50]
Length = 261
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 27 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 85
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 86 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 145
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ VV Y +
Sbjct: 146 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDIDADPVAVVRAMYPYIE 203
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 204 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 234
>gi|421847475|ref|ZP_16280612.1| tRNA-dihydrouridine synthase A [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|411771129|gb|EKS54842.1| tRNA-dihydrouridine synthase A [Citrobacter freundii ATCC 8090 =
MTCC 1658]
Length = 332
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y+ Y L RDFP LT ++NGGI
Sbjct: 157 FINTVSGNGECEMFIIHARKAWLSGLSPKENREIPPLDYDRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VMVGR AYQNP L VD I+ A + VV Y +
Sbjct: 217 KSLEEAKIHLQH-MDGVMVGREAYQNPG-ILASVDREIFAAATEDADPVAVVRAMYPYIE 274
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + V + +L F PG ++R
Sbjct: 275 RELSKGTY------LGHVTRHMLGLFQGIPGARQWRR 305
>gi|323492300|ref|ZP_08097456.1| tRNA-dihydrouridine synthase A [Vibrio brasiliensis LMG 20546]
gi|323313464|gb|EGA66572.1| tRNA-dihydrouridine synthase A [Vibrio brasiliensis LMG 20546]
Length = 333
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 121/215 (56%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 97 NVGCPSDRVQ-NGRFGACLMGEPQLVADCVAAMRDVVDIPVTVKTRIGIDDQDSYEFLTD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF L +NGG+
Sbjct: 156 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLVIAVNGGV 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L+ VMVGR AYQNP Y L VD I+G + R QVVE+ Y +
Sbjct: 216 KTLQETKEHLQH-LDGVMVGREAYQNP-YILAEVDQQIFGLDTPIKKRSQVVEEMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + ++ + + +L F + PG ++R
Sbjct: 274 QQL----SKGAYLGHITRHMLGLFQNMPGARQWRR 304
>gi|420339091|ref|ZP_14840642.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-315]
gi|391256784|gb|EIQ15907.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-315]
Length = 345
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDAYPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|170021953|ref|YP_001726907.1| tRNA-dihydrouridine synthase A [Escherichia coli ATCC 8739]
gi|251787304|ref|YP_003001608.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|253775323|ref|YP_003038154.1| tRNA-dihydrouridine synthase A [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254290735|ref|YP_003056483.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|300929788|ref|ZP_07145240.1| tRNA dihydrouridine synthase A [Escherichia coli MS 187-1]
gi|312974158|ref|ZP_07788329.1| tRNA-dihydrouridine synthase A [Escherichia coli 1827-70]
gi|386707290|ref|YP_006171137.1| tRNA-dihydrouridine synthase A [Escherichia coli P12b]
gi|422767922|ref|ZP_16821647.1| tRNA dihydrouridine synthase A [Escherichia coli E1520]
gi|422787897|ref|ZP_16840634.1| tRNA dihydrouridine synthase A [Escherichia coli H489]
gi|422793652|ref|ZP_16846347.1| tRNA dihydrouridine synthase A [Escherichia coli TA007]
gi|425307883|ref|ZP_18697539.1| tRNA-dihydrouridine synthase [Escherichia coli N1]
gi|432487842|ref|ZP_19729744.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE212]
gi|432578320|ref|ZP_19814762.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE56]
gi|433175983|ref|ZP_20360478.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE232]
gi|169756881|gb|ACA79580.1| TIM-barrel protein, yjbN family [Escherichia coli ATCC 8739]
gi|242379577|emb|CAQ34398.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|253326367|gb|ACT30969.1| TIM-barrel protein, yjbN family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253980042|gb|ACT45712.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|300462294|gb|EFK25787.1| tRNA dihydrouridine synthase A [Escherichia coli MS 187-1]
gi|310331692|gb|EFP98948.1| tRNA-dihydrouridine synthase A [Escherichia coli 1827-70]
gi|323935538|gb|EGB31869.1| tRNA dihydrouridine synthase A [Escherichia coli E1520]
gi|323960455|gb|EGB56088.1| tRNA dihydrouridine synthase A [Escherichia coli H489]
gi|323969817|gb|EGB65098.1| tRNA dihydrouridine synthase A [Escherichia coli TA007]
gi|383105458|gb|AFG42967.1| tRNA-dihydrouridine synthase A [Escherichia coli P12b]
gi|408224213|gb|EKI47936.1| tRNA-dihydrouridine synthase [Escherichia coli N1]
gi|431012815|gb|ELD26575.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE212]
gi|431110668|gb|ELE14586.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE56]
gi|431685672|gb|ELJ51240.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE232]
Length = 345
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDIDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|424031915|ref|ZP_17771339.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-01]
gi|408876920|gb|EKM16025.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-01]
Length = 315
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 132/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + +VPV+VK RIG+DD DSY L D
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDVVDVPVTVKTRIGIDDQDSYEFLTD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 138 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLTIAINGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +
Sbjct: 198 KSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSNAPVKKRSEIVEEMFPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A L ++ + + +L F + PG ++R + L++ + IP
Sbjct: 256 AQLA----KGAYLGHISRHMLGLFQNMPGARQWRRHISENAHKPGSGLEVLQDALAKIPK 311
Query: 243 SV 244
+
Sbjct: 312 EL 313
>gi|332531883|ref|ZP_08407767.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas haloplanktis
ANT/505]
gi|332038510|gb|EGI74953.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas haloplanktis
ANT/505]
Length = 313
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 132/240 (55%), Gaps = 8/240 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E ++ + N+PV+VK RIG+D+ DSY LC
Sbjct: 82 NVGCPSDRVQ-NGRFGACLMAEPQLVAECVAAMKNEVNIPVTVKTRIGIDEQDSYEFLCA 140
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
I + S FIIH+RKA LNG+SP ENR +PPL Y Y L +D+P L +LNGG+
Sbjct: 141 LI-EASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQLKKDYPQLDLSLNGGV 199
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VM+GR AY NP + L VD IYG ++ +R VV Y +
Sbjct: 200 KTIEQSLEHLQH-IDGVMIGREAYSNP-FMLNDVDEKIYGDSANTQSRHDVVRSMYDYIE 257
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ G N H + + +L F +PG F+R + + S +++ + +P+
Sbjct: 258 EEM-RLGANFWH---IARHMLGIFQGQPGARGFRRHLSESGHGKQADLSVMDKALSFVPE 313
>gi|194437343|ref|ZP_03069441.1| tRNA-dihydrouridine synthase A [Escherichia coli 101-1]
gi|194423899|gb|EDX39888.1| tRNA-dihydrouridine synthase A [Escherichia coli 101-1]
Length = 345
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDIDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|365968567|ref|YP_004950128.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae EcWSU1]
gi|365747480|gb|AEW71707.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae EcWSU1]
Length = 331
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 118/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNASLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 216 KSLEEAKTHLEH-MDGVMVGREAYQNPG-ILATVDREIFGVEGADTDPVAVVRAMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 274 REL----SNGTYLGHITRHMLGLFQGIPGARQWRR 304
>gi|416338796|ref|ZP_11674797.1| tRNA dihydrouridine synthase A [Escherichia coli WV_060327]
gi|432799971|ref|ZP_20033970.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE84]
gi|320193408|gb|EFW68045.1| tRNA dihydrouridine synthase A [Escherichia coli WV_060327]
gi|431353327|gb|ELG40081.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE84]
Length = 331
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 216 KSLGEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 274 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 304
>gi|187731116|ref|YP_001882727.1| tRNA-dihydrouridine synthase A [Shigella boydii CDC 3083-94]
gi|187428108|gb|ACD07382.1| tRNA-dihydrouridine synthase A [Shigella boydii CDC 3083-94]
Length = 347
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 113 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 171
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 172 FINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 231
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 232 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDAYPVAVVRAMYPYIE 289
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 290 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 320
>gi|421777222|ref|ZP_16213820.1| tRNA-dihydrouridine synthase A [Escherichia coli AD30]
gi|442598785|ref|ZP_21016534.1| tRNA dihydrouridine synthase A [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|408457717|gb|EKJ81510.1| tRNA-dihydrouridine synthase A [Escherichia coli AD30]
gi|441652543|emb|CCQ02085.1| tRNA dihydrouridine synthase A [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
Length = 339
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 105 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 164 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ VV Y +
Sbjct: 224 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDIDADPVAVVRAMYPYIE 281
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 282 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 312
>gi|336312633|ref|ZP_08567580.1| tRNA dihydrouridine synthase A [Shewanella sp. HN-41]
gi|335863806|gb|EGM68931.1| tRNA dihydrouridine synthase A [Shewanella sp. HN-41]
Length = 339
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 125/215 (58%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L
Sbjct: 104 NVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTH 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + FIIH+RKA L+G+SP ENR IPPL Y+ Y L RD+P L ++NGGI
Sbjct: 163 FIDTVMA-KGCGEFIIHARKAWLSGLSPKENREIPPLDYDRAYQLKRDYPTLNISINGGI 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L+ VM+GR AYQNP Y L VD + G+P + ++R V+E Y +
Sbjct: 222 TSLEQAKTHLQH-LDGVMMGREAYQNP-YILAQVDQMLCGSPKAVISREAVIETMLPYIE 279
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + G + + + ++ F PG ++R
Sbjct: 280 AHLQSGGR----LNHITRHMIGLFQGLPGARAWRR 310
>gi|422783599|ref|ZP_16836383.1| tRNA dihydrouridine synthase A [Escherichia coli TW10509]
gi|323975321|gb|EGB70424.1| tRNA dihydrouridine synthase A [Escherichia coli TW10509]
Length = 345
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDLDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|392543378|ref|ZP_10290515.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas piscicida JCM
20779]
Length = 339
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 132/245 (53%), Gaps = 27/245 (11%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P+ V + ++ + A ++PV+VK RIG+D+ DSY L I
Sbjct: 109 GCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKAEVDIPVTVKTRIGIDEQDSYEFLTALI 167
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+ S FIIH+RKA L G+SP ENR IPPL Y Y L +D+PDL ++NGG+ T
Sbjct: 168 -ETSQAVGCDDFIIHARKAWLQGLSPKENREIPPLDYPRVYQLKKDYPDLHISINGGVKT 226
Query: 125 VDEVNAALRKGAHH------VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQ 178
++E HH VMVGR AY NP + L VD +YG + TR QV+
Sbjct: 227 LEECQ-------HHLVHLDGVMVGREAYSNP-FMLSQVDELLYGEAAFTQTRHQVIRSMY 278
Query: 179 IYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKS 231
Y ++ + G N H + + +L F ++PG F+R K +A + + S
Sbjct: 279 DYFESEMSN-GANFWH---IARHMLGIFQNQPGARGFRRHLSENGHKKEAGIEVMEKALS 334
Query: 232 FLEET 236
F+ E
Sbjct: 335 FVPEA 339
>gi|452745003|ref|ZP_21944841.1| tRNA-dihydrouridine synthase A [Mannheimia haemolytica serotype 6
str. H23]
gi|452086843|gb|EME03228.1| tRNA-dihydrouridine synthase A [Mannheimia haemolytica serotype 6
str. H23]
Length = 325
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 13/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + +PV+VK RIG+DD DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVADCIKAMQDAVEIPVTVKHRIGIDDLDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV S FI+H+RKA L G+SP ENR IPPL Y+ Y L RDFP L ++NGGI
Sbjct: 155 FIEKVQPYS--NDFIVHARKAWLTGLSPKENREIPPLDYDRVYQLKRDFPHLKISINGGI 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L + VMVGR AYQNP LG +D+ I+ +T ++ VEK Y +
Sbjct: 213 KTIEEIKQHL-QFVDGVMVGREAYQNP-SMLGEIDSQIFNENRPLVTAKEAVEKMFPYIE 270
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G Y N+ +++ +L F G ++R
Sbjct: 271 RELAKGVYLNH------IVRHMLGAFQHCKGARQWRR 301
>gi|423112047|ref|ZP_17099741.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5243]
gi|423117437|ref|ZP_17105128.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5245]
gi|376375372|gb|EHS88164.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5243]
gi|376375567|gb|EHS88353.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5245]
Length = 313
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 124/241 (51%), Gaps = 7/241 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 79 NVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 138 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMAINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L VMVGR AYQNP L VD I+G VV Y +
Sbjct: 198 KSLEEAKEHLEH-MDGVMVGREAYQNPG-ILASVDREIFGVEGVDADPVSVVRAMYPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L +N ++ V + +L F PG ++R + LE+ + + D
Sbjct: 256 REL----SNGTYLGHVTRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEQALKLVAD 311
Query: 243 S 243
Sbjct: 312 K 312
>gi|82546382|ref|YP_410329.1| tRNA-dihydrouridine synthase A [Shigella boydii Sb227]
gi|417684897|ref|ZP_12334230.1| tRNA-dihydrouridine synthase A [Shigella boydii 3594-74]
gi|420327529|ref|ZP_14829273.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
CCH060]
gi|420355686|ref|ZP_14856742.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
4444-74]
gi|420383439|ref|ZP_14882851.1| tRNA dihydrouridine synthase A family protein [Shigella dysenteriae
225-75]
gi|421684504|ref|ZP_16124289.1| tRNA-dihydrouridine synthase A [Shigella flexneri 1485-80]
gi|81247793|gb|ABB68501.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|332087840|gb|EGI92966.1| tRNA-dihydrouridine synthase A [Shigella boydii 3594-74]
gi|391247559|gb|EIQ06807.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
CCH060]
gi|391271109|gb|EIQ29985.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
4444-74]
gi|391296500|gb|EIQ54590.1| tRNA dihydrouridine synthase A family protein [Shigella dysenteriae
225-75]
gi|404336104|gb|EJZ62567.1| tRNA-dihydrouridine synthase A [Shigella flexneri 1485-80]
Length = 345
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDAYPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|417844182|ref|ZP_12490243.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21127]
gi|341947567|gb|EGT74214.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21127]
Length = 329
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 131/239 (54%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 155 FIEKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQLKRDFPYLTIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LG +D A++ + +T + V+ Y +
Sbjct: 214 KTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVQSMLPYIE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F G ++R K A + +T SF+E
Sbjct: 272 QQL----SQGIHLNHIVRHMLGAFQHCKGARQWRRYLSENAFKQGAGVEVVETALSFVE 326
>gi|416270359|ref|ZP_11642755.1| tRNA dihydrouridine synthase A [Shigella dysenteriae CDC 74-1112]
gi|416298763|ref|ZP_11652086.1| tRNA dihydrouridine synthase A [Shigella flexneri CDC 796-83]
gi|320174478|gb|EFW49618.1| tRNA dihydrouridine synthase A [Shigella dysenteriae CDC 74-1112]
gi|320185261|gb|EFW60037.1| tRNA dihydrouridine synthase A [Shigella flexneri CDC 796-83]
Length = 339
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 105 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 164 FINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 224 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDAYPVAVVRAMYPYIE 281
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 282 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 312
>gi|434397477|ref|YP_007131481.1| tRNA-U16,U17-dihydrouridine synthase [Stanieria cyanosphaera PCC
7437]
gi|428268574|gb|AFZ34515.1| tRNA-U16,U17-dihydrouridine synthase [Stanieria cyanosphaera PCC
7437]
Length = 330
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPSP+V +G FG LM P+ V A++ + ++PV+VK RIG+D+ D Y L
Sbjct: 99 NVGCPSPRVQ-NGNFGACLMAQPELVATAVAKMQDAVSIPVTVKHRIGIDERDRYEDLAQ 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + RHFI+H+RKA L G+SP ENR IPPL+Y+ + L ++FP L +NGGI
Sbjct: 158 FVQIVAE-AGCRHFIVHARKAWLKGLSPKENRNIPPLRYQDVHRLKQEFPHLLIEINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++++ L VM+GRAAY +P Y VD IY ++ TR QVVE Y D
Sbjct: 217 ITLEQIKEQLNY-VDAVMIGRAAYDDP-YLFATVDRDIYQQSATPPTRHQVVEAMLPYID 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + +L F +PG +KR
Sbjct: 275 ----YWTKKGLKLHGISRHMLQLFAGQPGTKAWKR 305
>gi|148981615|ref|ZP_01816472.1| tRNA-dihydrouridine synthase A [Vibrionales bacterium SWAT-3]
gi|145960800|gb|EDK26135.1| tRNA-dihydrouridine synthase A [Vibrionales bacterium SWAT-3]
Length = 315
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 123/215 (57%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + + + T++P++VK RIG+DD DSY L
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPELVADCVLAMKEVTDIPITVKTRIGIDDQDSYEFLTK 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS F IH+RKA L+G+SP ENR IPPL Y+ Y + +DF DL +NGGI
Sbjct: 138 FISTVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYDRAYQIKKDFSDLVIAVNGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VM+GR AY +P + L VD I+G + R QVVE+ Y +
Sbjct: 198 TTLEQTKEHLQH-LDGVMIGREAYHSP-FILAEVDQQIFGLDTPIKKRSQVVEEMYPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + G + H+ + +L F S PG ++R
Sbjct: 256 REL-SKGASLGHIS---RHMLGLFQSMPGARQWRR 286
>gi|50122581|ref|YP_051748.1| tRNA-dihydrouridine synthase A [Pectobacterium atrosepticum
SCRI1043]
gi|49613107|emb|CAG76558.1| putative dihydrouridine synthase [Pectobacterium atrosepticum
SCRI1043]
Length = 340
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 121/219 (55%), Gaps = 19/219 (8%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM D V + + + +T++P++VK RIG+DD DSY LC+FI
Sbjct: 109 GCPSDRVQ-NGRFGACLMGDAALVADCIKAMKDSTSIPITVKTRIGIDDQDSYEFLCEFI 167
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ FI+H+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+ T
Sbjct: 168 QTVAERGECDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPALTIAINGGVKT 227
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVE------KYQ 178
++E L+ VM+GR AYQNP L VD ++G ++ VV + +
Sbjct: 228 LEEAKMHLQH-LDGVMMGREAYQNPG-ILAQVDRELFGIDAATQDLAGVVRSMYPYIERE 285
Query: 179 IYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ GDA LG + + +L F PG ++R
Sbjct: 286 LSGDASLG----------HITRHMLGMFQGIPGARQWRR 314
>gi|410638177|ref|ZP_11348741.1| tRNA-dihydrouridine synthase A [Glaciecola lipolytica E3]
gi|410142097|dbj|GAC15946.1| tRNA-dihydrouridine synthase A [Glaciecola lipolytica E3]
Length = 345
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 120/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + + + A ++PV+VK RIG+D+ D Y L
Sbjct: 95 NVGCPSDRVQ-NGRFGACLMAEPETVAQCIKSMQAEIDIPVTVKSRIGIDEMDEYEDLTR 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ + FI+H+RKA L G+SP ENR IPPL YE Y L FPDL ++NGG+
Sbjct: 154 FITTVAD-AGCDTFIVHARKAWLKGLSPKENRDIPPLMYERVYHLKEQFPDLHISINGGV 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+V L K VM+GR Y NP Y L VD YG TR VVE Y
Sbjct: 213 KTLDDVALHL-KYIDGVMIGREVYSNP-YILADVDKRFYGDNHKVPTRHDVVESMIEYAK 270
Query: 183 AILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKR 217
A L PH R + + +L F +PG +++R
Sbjct: 271 AQL-----ELPHTRIWHIARHMLGLFQGQPGARIWRR 302
>gi|425291271|ref|ZP_18682073.1| tRNA-dihydrouridine synthase [Escherichia coli 3006]
gi|408208406|gb|EKI33055.1| tRNA-dihydrouridine synthase [Escherichia coli 3006]
Length = 345
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L + PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLYQGIPGARQWRR 318
>gi|269468879|gb|EEZ80471.1| tRNA-dihydrouridine synthase [uncultured SUP05 cluster bacterium]
Length = 310
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 129/235 (54%), Gaps = 8/235 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V + + + +N+ ++VK RIGVDD +SY++L +
Sbjct: 79 NAGCPSDRVQS-GSFGACLMNTPQVVADCVDAMKQVSNLSITVKSRIGVDDMESYDELTN 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V S FIIH+RKA L G+SP ENRT+PPL Y++ Y + +DFP LT +NGGI
Sbjct: 138 FISLVEK-SGCDTFIIHARKAWLKGLSPKENRTVPPLNYDWVYQIKQDFPSLTIGINGGI 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
N +++ L K VM+GRA Y P Y L VD IY SS +R QV+ + Y
Sbjct: 197 NHLEDACKHLEK-VDSVMLGRAVYHQP-YLLTDVDEIIYHQSSSITSREQVLLSFIDY-- 252
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETI 237
+ +R + + +L +H + FKR + T + +L+ T+
Sbjct: 253 --MKVQSQQGVPIRAMTRHILGLYHGQKNAKKFKRLLSGSSVTLDHLYEWLDFTV 305
>gi|386032623|ref|YP_005952536.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae KCTC 2242]
gi|424828429|ref|ZP_18253157.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|449060398|ref|ZP_21738057.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae hvKP1]
gi|339759751|gb|AEJ95971.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae KCTC 2242]
gi|414705834|emb|CCN27538.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|448873903|gb|EMB08971.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae hvKP1]
Length = 332
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 118/217 (54%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y + L RDFP LT +NGGI
Sbjct: 157 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQLKRDFPHLTMAINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 217 KSLDEARVQLEH-MDGVMVGREAYQNPG-ILASVDREIFGVAGADADPVAVVRAMYPYIE 274
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 275 RELSKGTYLGH------ITRHMLGLFQGIPGARQWRR 305
>gi|432367623|ref|ZP_19610732.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE10]
gi|432528952|ref|ZP_19766017.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE233]
gi|432668481|ref|ZP_19904044.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE119]
gi|430890145|gb|ELC12782.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE10]
gi|431058914|gb|ELD68291.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE233]
gi|431215501|gb|ELF13189.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE119]
Length = 345
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDIDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|390950169|ref|YP_006413928.1| tRNA-U16,U17-dihydrouridine synthase [Thiocystis violascens DSM
198]
gi|390426738|gb|AFL73803.1| tRNA-U16,U17-dihydrouridine synthase [Thiocystis violascens DSM
198]
Length = 336
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 121/216 (56%), Gaps = 8/216 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + ++ + VPV+VK RIG+DD DSY +L D
Sbjct: 101 NVGCPSDRVQ-NGRFGACLMAEPGLVADCVAAMKDAVTVPVTVKTRIGIDDRDSYGELVD 159
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + + I+H+RKA L G+SP ENR +PPL+YE L DFPDLT ++NGGI
Sbjct: 160 FV-GTQAAAGCDALIVHARKAWLKGLSPKENRDVPPLRYEVVQQLKTDFPDLTISINGGI 218
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E A VM+GR AY NPW L D ++G LTR +V++++ Y
Sbjct: 219 KTLIEA-ADFLTTLDGVMIGREAYHNPWM-LAQADRVVFGDDHPPLTRHEVLDRFLPYAQ 276
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK 218
L P + + + LL F +PG ++R+
Sbjct: 277 RELAA---GVP-LSAMSRHLLGLFQGQPGGRAWRRR 308
>gi|432443665|ref|ZP_19685986.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE189]
gi|432448740|ref|ZP_19691034.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE191]
gi|433016399|ref|ZP_20204716.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE104]
gi|433025981|ref|ZP_20213940.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE106]
gi|433326392|ref|ZP_20403233.1| tRNA-dihydrouridine synthase A [Escherichia coli J96]
gi|450196390|ref|ZP_21892861.1| tRNA-dihydrouridine synthase A [Escherichia coli SEPT362]
gi|430960263|gb|ELC78419.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE189]
gi|430970425|gb|ELC87497.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE191]
gi|431525308|gb|ELI02105.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE104]
gi|431529138|gb|ELI05841.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE106]
gi|432345486|gb|ELL39989.1| tRNA-dihydrouridine synthase A [Escherichia coli J96]
gi|449315504|gb|EMD05646.1| tRNA-dihydrouridine synthase A [Escherichia coli SEPT362]
Length = 331
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ VV Y +
Sbjct: 216 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDIDADPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 274 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 304
>gi|424041341|ref|ZP_17779297.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-02]
gi|408890835|gb|EKM28832.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-02]
Length = 326
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 132/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + +VPV+VK RIG+DD DSY L D
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDVVDVPVTVKTRIGIDDQDSYEFLTD 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 149 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLTIAINGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +
Sbjct: 209 KSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSNAPVKKRSEIVEEMFPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A L ++ + + +L F + PG ++R + L++ + IP
Sbjct: 267 AQLA----KGAYLGHISRHMLGLFQNMPGARQWRRHISENAHKPGSGLEVLQDALAKIPK 322
Query: 243 SV 244
+
Sbjct: 323 EL 324
>gi|385786265|ref|YP_005817374.1| tRNA-dihydrouridine synthase A [Erwinia sp. Ejp617]
gi|310765537|gb|ADP10487.1| tRNA-dihydrouridine synthase A [Erwinia sp. Ejp617]
Length = 331
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 129/244 (52%), Gaps = 14/244 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + +VPV+VK RIG+DD DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMGEAQLVADGIKAMRDVVSVPVTVKTRIGIDDQDSYEFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI+ VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGG+
Sbjct: 152 FIHTVSEQGGCEVFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTLSINGGV 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E L+ VM+GR AYQNP L VD ++G S VV Y +
Sbjct: 212 KSLAEAKIHLQH-LDGVMMGREAYQNPGL-LAQVDRELFGCTSPAADPIAVVRSMYPYIE 269
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
L N ++ V + +L F PG ++R KA A + + S + +
Sbjct: 270 RELA----NGTYLGHVTRHMLGLFQGIPGARQWRRYLSENTHKAGAGVEVVEKALSLVAD 325
Query: 236 TIVA 239
+A
Sbjct: 326 KAIA 329
>gi|331680980|ref|ZP_08381617.1| tRNA-dihydrouridine synthase A [Escherichia coli H299]
gi|331081201|gb|EGI52362.1| tRNA-dihydrouridine synthase A [Escherichia coli H299]
Length = 345
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDIDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|365143210|ref|ZP_09348141.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 4_1_44FAA]
gi|363649755|gb|EHL88857.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 4_1_44FAA]
Length = 313
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 118/217 (54%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 79 NVGCPSDRVQ-NGMFGACLMGNAPLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y + L RDFP LT +NGGI
Sbjct: 138 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQLKRDFPHLTMAINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE A L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 198 KSLDEARAQLEH-MDGVMVGREAYQNPG-ILASVDREIFGVAGADADPVAVVRAMYPYIE 255
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 256 RELSKGTY------LGHITRHMLGLFQGIPGARQWRR 286
>gi|261494145|ref|ZP_05990648.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496014|ref|ZP_05992424.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261308264|gb|EEY09557.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310311|gb|EEY11511.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 325
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 13/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + +PV+VK RIG+DD DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVADCIKAMQDAVEIPVTVKHRIGIDDLDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV S FI+H+RKA L G+SP ENR IPPL Y+ Y L RDFP L ++NGGI
Sbjct: 155 FIEKVQPYS--NDFIVHARKAWLTGLSPKENREIPPLDYDRVYQLKRDFPHLKISINGGI 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L + VMVGR AYQNP LG +D+ I+ +T ++ VEK Y +
Sbjct: 213 KTIEEIKQHL-QFVDGVMVGREAYQNP-SMLGEIDSQIFNENRPLVTAKEAVEKMFPYIE 270
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G Y N+ +++ +L F G ++R
Sbjct: 271 RELAKGVYLNH------IVRHMLGAFQHCKGARQWRR 301
>gi|418024442|ref|ZP_12663425.1| TIM-barrel protein, yjbN family [Shewanella baltica OS625]
gi|353536402|gb|EHC05961.1| TIM-barrel protein, yjbN family [Shewanella baltica OS625]
Length = 334
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L
Sbjct: 99 NVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYAFLTQ 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS+ T F IH+RKA L G+SP ENR IPPL YE Y L RD+P L +NGG+
Sbjct: 158 FIDVVSAKGCT-DFTIHARKAWLQGLSPKENREIPPLDYERVYQLKRDYPTLNIGINGGV 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L + VM+GR AYQNP Y L VD + G+ + ++R V+E Y +
Sbjct: 217 TTLEQAQLHLAQ-LDGVMMGREAYQNP-YILAQVDQVLCGSQKAVISREDVIEAMLPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + G + + + ++ F PG ++R
Sbjct: 275 AHLQSGG----RLNHITRHMIGLFQGLPGARAWRR 305
>gi|417846290|ref|ZP_12492299.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21639]
gi|341952774|gb|EGT79293.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21639]
Length = 327
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 131/239 (54%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKANLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 155 FIEKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQLKRDFPHLTIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LG +D A++ + +T + V+ Y +
Sbjct: 214 KTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVQSMLPYIE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F + G ++R K A + +T F+E
Sbjct: 272 QQL----SQGIHLNHIVRHMLGAFQNCKGARQWRRYLSENAFKQGAGVEVVETALHFVE 326
>gi|432878609|ref|ZP_20095891.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE154]
gi|431416474|gb|ELG98960.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE154]
Length = 345
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 127/242 (52%), Gaps = 11/242 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDIDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
L GTY + + + +L F PG ++R + LE + +
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLV 341
Query: 241 PD 242
D
Sbjct: 342 AD 343
>gi|311281407|ref|YP_003943638.1| yjbN family TIM-barrel protein [Enterobacter cloacae SCF1]
gi|308750602|gb|ADO50354.1| TIM-barrel protein, yjbN family [Enterobacter cloacae SCF1]
Length = 332
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 121/215 (56%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LC+
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDAASIPVTVKTRIGIDDQDSYEFLCE 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FINTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E A L+ VMVGR YQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLAEAKAHLQH-MDGVMVGREVYQNPG-ILATVDREIFGASAADADPIAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 275 REL----SNGTYLGHITRHMLGLFQGIPGARQWRR 305
>gi|238892522|ref|YP_002917256.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|238544838|dbj|BAH61189.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 331
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 118/217 (54%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAPLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y + L RDFP LT +NGGI
Sbjct: 156 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQLKRDFPHLTMAINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE A L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 216 KSLDEARAQLEH-MDGVMVGREAYQNPG-ILASVDREIFGVAGADADPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 274 RELSKGTY------LGHITRHMLGLFQGIPGARQWRR 304
>gi|253689857|ref|YP_003019047.1| TIM-barrel protein, yjbN family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756435|gb|ACT14511.1| TIM-barrel protein, yjbN family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 340
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 124/220 (56%), Gaps = 21/220 (9%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + V + + + +T++P++VK RIG+DD DSY LCDFI
Sbjct: 109 GCPSDRVQ-NGRFGACLMGEASLVADCIKAMKDSTSIPITVKTRIGIDDQDSYAFLCDFI 167
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ L FI+H+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+ T
Sbjct: 168 QTVAELGECETFIVHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPALTIAINGGVKT 227
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPS-----SGLTRRQ--VVEKY 177
++E L+ VM+GR AYQNP L VD ++G + +G+ R +E+
Sbjct: 228 LEEAKTHLQH-LDGVMMGREAYQNPG-ILAQVDRELFGIDAATPDLAGVVRTMYPYIER- 284
Query: 178 QIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
++ G A LG + + +L F PG ++R
Sbjct: 285 ELSGGAALG----------HITRHMLGMFQGIPGARQWRR 314
>gi|385792523|ref|YP_005825499.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676669|gb|AEB27539.1| tRNA-dihydrouridine synthase A [Francisella cf. novicida Fx1]
Length = 295
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 133/234 (56%), Gaps = 11/234 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG+SLM +P+ V + + + N N+P+SVKCRIG D +DSY +L D
Sbjct: 60 NVGCPSERVK-KGNFGLSLMAEPELVADCVKAMKDNLNIPISVKCRIGYDHNDSYEELYD 118
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K + + IH+RK L+G+SP ENRTIP LKY+ Y++ +DFP+L +NGGI
Sbjct: 119 FVDKQVQ-AGVDYLCIHARKGWLSGLSPKENRTIPELKYDVVYSIKKDFPNLELGINGGI 177
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L K VM+GR AY NP D Y P++ ++ ++ K Y
Sbjct: 178 TTIQETQQHL-KYVDSVMIGREAYHNPM-LFKDFDNIFYNQPTTDISALEIAYKMAEY-- 233
Query: 183 AILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSFL 233
+ +N P+++ ++ K L+ F+ P +++R ++ A + V +FL
Sbjct: 234 --IKDQMDNDPYIKLNNITKHTLNLFNGLPNAKVYRRYLSENATKKEANVDTFL 285
>gi|160873928|ref|YP_001553244.1| tRNA-dihydrouridine synthase A [Shewanella baltica OS195]
gi|378707171|ref|YP_005272065.1| yjbN family TIM-barrel protein [Shewanella baltica OS678]
gi|160859450|gb|ABX47984.1| TIM-barrel protein, yjbN family [Shewanella baltica OS195]
gi|315266160|gb|ADT93013.1| TIM-barrel protein, yjbN family [Shewanella baltica OS678]
Length = 339
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L
Sbjct: 104 NVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYAFLTQ 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS+ T F IH+RKA L G+SP ENR IPPL YE Y L RD+P L +NGG+
Sbjct: 163 FIDVVSAKGCT-DFTIHARKAWLQGLSPKENREIPPLDYERVYQLKRDYPTLNIGINGGV 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L + VM+GR AYQNP Y L VD + G+ + ++R V+E Y +
Sbjct: 222 TTLEQAQLHLAQ-LDGVMMGREAYQNP-YILAQVDQVLCGSQKAVISREDVIEAMLPYIE 279
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + G + + + ++ F PG ++R
Sbjct: 280 AHLQSGG----RLNHITRHMIGLFQGLPGARAWRR 310
>gi|152999313|ref|YP_001364994.1| tRNA-dihydrouridine synthase A [Shewanella baltica OS185]
gi|151363931|gb|ABS06931.1| TIM-barrel protein, yjbN family [Shewanella baltica OS185]
Length = 339
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L
Sbjct: 104 NVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYAFLTQ 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS+ T F IH+RKA L G+SP ENR IPPL YE Y L RD+P L +NGG+
Sbjct: 163 FIDVVSAKGCT-DFTIHARKAWLQGLSPKENREIPPLDYERVYQLKRDYPTLNIGINGGV 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L + VM+GR AYQNP Y L VD + G+ + ++R V+E Y +
Sbjct: 222 TTLEQAQLHLAQ-LDGVMMGREAYQNP-YILAQVDQVLCGSQKAVISREDVIEAMLPYIE 279
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + G + + + ++ F PG ++R
Sbjct: 280 AHLQSGG----RLNHITRHMIGLFQGLPGARAWRR 310
>gi|425078874|ref|ZP_18481977.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425089506|ref|ZP_18492599.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425094197|ref|ZP_18497280.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|405589675|gb|EKB63240.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405599947|gb|EKB73122.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405610070|gb|EKB82895.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
Length = 313
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 118/217 (54%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 79 NVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y + L RDFP LT +NGGI
Sbjct: 138 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQLKRDFPHLTMAINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 198 KSLDEARVQLEH-MDGVMVGREAYQNPG-ILASVDREIFGVAGADADPVAVVRAMYPYIE 255
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 256 RELSKGTY------LGHITRHMLGLFQGIPGARQWRR 286
>gi|271501941|ref|YP_003334967.1| yjbN family TIM-barrel protein [Dickeya dadantii Ech586]
gi|270345496|gb|ACZ78261.1| TIM-barrel protein, yjbN family [Dickeya dadantii Ech586]
Length = 344
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 120/221 (54%), Gaps = 19/221 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + ++ + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGRFGACLMAEAQLVADCVTAMRERVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FI+H+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 170 FIRTVSEQGGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPSLTLAINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVE------K 176
T+ E L VMVGR AYQNP L VD ++ A S + VV+ +
Sbjct: 230 KTLAEAKQHLEH-VDGVMVGREAYQNPG-MLAQVDRDLFDATSVVPNQAAVVQAMYPYIE 287
Query: 177 YQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
++ G A LG + + +L F PG ++R
Sbjct: 288 RELSGGAALG----------HITRHMLGLFQGIPGARQWRR 318
>gi|440289524|ref|YP_007342289.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440049046|gb|AGB80104.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 331
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 120/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVAGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 216 KSLEEAKTHLQH-MDGVMVGREAYQNPG-ILATVDREIFGVEGADTDPVAVVRAMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ V + +L F PG ++R
Sbjct: 274 REL----SNGTYLGHVTRHMLGLFQGIPGARQWRR 304
>gi|213859447|ref|ZP_03385151.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 284
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 102/162 (62%), Gaps = 3/162 (1%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCDFI
Sbjct: 100 GCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFI 158
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI +
Sbjct: 159 NTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKS 218
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSS 166
++E LR VMVGR AYQNP L VD I+GA ++
Sbjct: 219 LEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTT 258
>gi|428223727|ref|YP_007107824.1| tRNA-U16,U17-dihydrouridine synthase [Geitlerinema sp. PCC 7407]
gi|427983628|gb|AFY64772.1| tRNA-U16,U17-dihydrouridine synthase [Geitlerinema sp. PCC 7407]
Length = 344
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 125/216 (57%), Gaps = 10/216 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V EA++ + A T +PV+VK RIG+DD D Y +
Sbjct: 103 NVGCPSDRVQS-GNFGACLMAQPERVAEAVAAMQAVTRLPVTVKHRIGIDDRDRYEDMTA 161
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+S + RHF +H+RKA L G+SP ENR +PPL+Y+ Y L +DFP L +NGGI
Sbjct: 162 FVETVAS-AGCRHFTVHARKAWLQGLSPKENRDVPPLRYDDVYRLKQDFPHLFIEINGGI 220
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L++ VM+GRAAY +P + VD YG TR+ V E Y
Sbjct: 221 TTLEQARDHLQR-VDAVMIGRAAYDHP-FLFATVDRDFYGQAVEPPTRQAVAEAMVPYIA 278
Query: 183 AILG-TYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+G + NR + + +L F+ +PG+ +KR
Sbjct: 279 RWVGPQFKLNR-----ISRHMLQLFNGQPGSRAWKR 309
>gi|396384|gb|AAC43143.1| ORF_o345 [Escherichia coli str. K-12 substr. MG1655]
Length = 345
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAXXVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|254362517|ref|ZP_04978621.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica PHL213]
gi|153094117|gb|EDN75017.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica PHL213]
Length = 325
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 13/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + +PV+VK RIG+DD DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVADCIKAMQDAVEIPVTVKHRIGIDDLDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV S FI+H+RKA L G+SP ENR IPPL Y+ Y L RDFP L ++NGGI
Sbjct: 155 FIEKVQPYS--NDFIVHARKAWLTGLSPKENREIPPLDYDRVYQLKRDFPHLKISINGGI 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L + VMVGR AYQNP LG +D+ I+ +T ++ VEK Y +
Sbjct: 213 KTIEEIKQHL-QFVDGVMVGREAYQNP-SMLGEIDSQIFNENRPLVTAKEAVEKMFPYIE 270
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G Y N+ +++ +L F G ++R
Sbjct: 271 RELAKGIYLNH------IVRHMLGAFQHCKGARQWRR 301
>gi|238027482|ref|YP_002911713.1| dihydrouridine synthase [Burkholderia glumae BGR1]
gi|237876676|gb|ACR29009.1| Dihydrouridine synthase [Burkholderia glumae BGR1]
Length = 336
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 114/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + + + +VPV+VK RIGVD + Y + D
Sbjct: 99 NCGCPSERVQ-RGAFGACLMNEPGLVADCVKAMRDAVSVPVTVKHRIGVDAVEEYAFVRD 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L +DFPDL +NGGI
Sbjct: 158 FVGTVAQ-AGCDVFIVHARNAILKGLSPKENREIPPLKYDYAYRLKQDFPDLEIIINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY-- 180
T+DEV A L+ VM+GR AY NP + L VD YGA ++ TR ++ E+ Y
Sbjct: 217 TTLDEVEAHLQH-VDGVMLGREAYHNP-FVLAEVDRRFYGAAAAAPTREEIEERLIAYCV 274
Query: 181 GDAILGTY 188
+ GTY
Sbjct: 275 AEIARGTY 282
>gi|422832678|ref|ZP_16880747.1| tRNA-dihydrouridine synthase A [Escherichia coli E101]
gi|432414540|ref|ZP_19657183.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE44]
gi|432634945|ref|ZP_19870839.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE81]
gi|371614827|gb|EHO03310.1| tRNA-dihydrouridine synthase A [Escherichia coli E101]
gi|430946293|gb|ELC66236.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE44]
gi|431175589|gb|ELE75591.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE81]
Length = 345
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LC+
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCN 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|387614780|ref|YP_006117896.1| tRNA-dihydrouridine synthase A [Escherichia coli ETEC H10407]
gi|309704516|emb|CBJ03865.1| tRNA-dihydrouridine synthase A [Escherichia coli ETEC H10407]
Length = 345
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LC+
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCN 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|54310405|ref|YP_131425.1| tRNA-dihydrouridine synthase A [Photobacterium profundum SS9]
gi|46914846|emb|CAG21623.1| putative NifR3/Smm1 family protein [Photobacterium profundum SS9]
Length = 346
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V +S + ++PV+VK RIG+D+ DSY L D
Sbjct: 110 NVGCPSDRVQ-NGRFGACLMGEADLVALCVSSMREVVDIPVTVKTRIGIDEQDSYQFLVD 168
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ S +F +H+RKA L G+SP ENR IPPL Y Y L RDFP++ +NGGI
Sbjct: 169 FIGTVNEKSGCDNFTVHARKAWLKGLSPKENREIPPLDYPRVYQLKRDFPNIIMAINGGI 228
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T DE+ L K VMVGR AYQNP Y + VD ++G+ + RR+ E Y +
Sbjct: 229 KTFDEMEEHL-KHMDGVMVGREAYQNP-YLMAEVDQRLFGSSKPIIKRREAAEAMFPYIE 286
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L N + + + +L F PG ++R
Sbjct: 287 RQLA----NGSKLGHITRHMLGLFQGIPGGRQWRR 317
>gi|288550133|ref|ZP_05969393.2| tRNA-dihydrouridine synthase A [Enterobacter cancerogenus ATCC
35316]
gi|288316334|gb|EFC55272.1| tRNA-dihydrouridine synthase A [Enterobacter cancerogenus ATCC
35316]
Length = 313
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V +++ + ++PV+VK RIG+DD DSY LCD
Sbjct: 79 NVGCPSDRVQ-NGMFGACLMGNAQLVADSIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 138 FIDTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 197
Query: 123 NTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
+++E L AH VMVGR AYQNP L VD I+G + VV Y
Sbjct: 198 KSLEEAKTHL---AHMDGVMVGREAYQNPG-ILATVDREIFGVEGADTDPVSVVRAMYPY 253
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ L +N + + + +L F PG ++R
Sbjct: 254 IEREL----SNGTWLGHITRHMLGLFQGIPGARQWRR 286
>gi|407713533|ref|YP_006834098.1| tRNA-dihydrouridine synthase A [Burkholderia phenoliruptrix
BR3459a]
gi|407235717|gb|AFT85916.1| tRNA-dihydrouridine synthase A [Burkholderia phenoliruptrix
BR3459a]
Length = 316
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 124/217 (57%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y+ + D
Sbjct: 79 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSVPVTVKHRIGVDAVEDYSFVRD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 138 FVGTIAQ-AGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQLEIVINGGI 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L+ VM+GR AY +P Y L VD YG+ + LTR QV K Y
Sbjct: 197 KTLDEVETHLQH-VDGVMLGREAYHHP-YLLADVDARFYGSSEAPLTREQVEAKLVEYCA 254
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A + GTY + + + L + E G ++R
Sbjct: 255 AEMARGTY------LGAITRHALGLYRGEAGARGWRR 285
>gi|117919170|ref|YP_868362.1| tRNA-dihydrouridine synthase A [Shewanella sp. ANA-3]
gi|117611502|gb|ABK46956.1| TIM-barrel protein, yjbN family [Shewanella sp. ANA-3]
Length = 334
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 130/244 (53%), Gaps = 15/244 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L
Sbjct: 99 NVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQAVDIPVTVKTRIGIDEQDSYEFLTH 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + FIIH+RKA L G+SP ENR IPPL Y+ Y L RD+P L ++NGGI
Sbjct: 158 FIDTVMA-KGCGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQLKRDYPTLNISINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L+ VMVGR AYQNP Y L VD + G+ + ++R V+E Y +
Sbjct: 217 TSLEQAKTHLQH-LDGVMVGREAYQNP-YILAQVDQLLCGSQKAVMSREAVIETMLPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
A L G + + + ++ F PG ++R K A + K ++
Sbjct: 275 AHLQAGG----RLNHITRHMIGLFQGLPGARAWRRYLSENAHKNGAGIEVVKQAYQSIQS 330
Query: 236 TIVA 239
I A
Sbjct: 331 EITA 334
>gi|418745884|ref|ZP_13302219.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. CBC379]
gi|418754487|ref|ZP_13310713.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. MOR084]
gi|409965207|gb|EKO33078.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. MOR084]
gi|410793268|gb|EKR91188.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. CBC379]
Length = 344
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 135/248 (54%), Gaps = 7/248 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + + ++PV+VKCRIG+ ++ LC
Sbjct: 98 NVGCPSDRVR-EGNFGACLMKTPERVAELVFAMDTSVSIPVTVKCRIGIPGKETLEDLCR 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + + FI+H+R A+L G+SPA+NR +PPL+Y AL R+FP+L +NGGI
Sbjct: 157 FIECVRQ-AGVKRFIVHARIAILGGLSPAQNRQVPPLRYADVEALKREFPNLLIEINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E+ L K VM+GRAAY+ P Y VD+ + S L+R +V+ + + Y +
Sbjct: 216 RTIAEMRERL-KTNDGVMIGRAAYETP-YLFSEVDSLFFNNDSPSLSRGEVLLRMRDYVE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH G F+R + L + + IPD
Sbjct: 274 EVVLKEKNGKPH--HALRHILGLFHGVKGARSFRRTLTERMYHDYS-NDLLSDAVQEIPD 330
Query: 243 SVLDSPIE 250
LD ++
Sbjct: 331 DTLDLKLQ 338
>gi|428299821|ref|YP_007138127.1| tRNA-U16,U17-dihydrouridine synthase [Calothrix sp. PCC 6303]
gi|428236365|gb|AFZ02155.1| tRNA-U16,U17-dihydrouridine synthase [Calothrix sp. PCC 6303]
Length = 340
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 122/215 (56%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM+ P+ V + ++ + A N+P+SVK RIGVDD DSY +
Sbjct: 107 NVGCPSSRVQD-GNFGACLMMQPEKVADCVAAMVAAVNIPISVKHRIGVDDVDSYENMAA 165
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ LS + F +H+RKA L G+SP ENR IPPL+Y + L DFPDL +NGG+
Sbjct: 166 FVNAIA-LSGCKVFNVHARKAWLKGLSPKENRDIPPLRYADVHRLKADFPDLFIEINGGL 224
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ +V L + VM+GRAAY NP Y VD+ YG + TR QVVE Y D
Sbjct: 225 TNLAQVQEQL-ESVDAVMIGRAAYNNP-YLFSQVDSQFYGDENIPRTRHQVVEAMLPYVD 282
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + +L F +PG+ +K+
Sbjct: 283 ----KWTAKGLKLHKITRHMLQLFAGKPGSRAWKQ 313
>gi|312884652|ref|ZP_07744353.1| tRNA-dihydrouridine synthase A [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367565|gb|EFP95116.1| tRNA-dihydrouridine synthase A [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 333
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 121/215 (56%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 97 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMREVVDIPVTVKTRIGIDDQDSYQFLTD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ F IH+RKA L+G+SP +NR IPPL Y Y L +DF L +NGG+
Sbjct: 156 FVSIVAEKGGCEQFTIHARKAWLSGLSPKQNREIPPLDYPRAYQLKKDFSHLNIAINGGV 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L VM+GR AYQNP Y L VD I+GA S R QVVE+ Y +
Sbjct: 216 KTLQESQEHLVH-LDGVMMGREAYQNP-YILAQVDQLIFGADSPIKKRSQVVEEMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + ++ + + +L F + PG ++R
Sbjct: 274 QQL----SQGAYLGHITRHMLGLFQNMPGARQWRR 304
>gi|153839570|ref|ZP_01992237.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AQ3810]
gi|149746903|gb|EDM57891.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AQ3810]
Length = 326
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + +VPV+VK RIG+DD DSY L D
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKEVVDVPVTVKTRIGIDDQDSYEFLTD 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 149 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKQDFSHLTIAINGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +
Sbjct: 209 KSLEEAKVHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSNAPVKKRSEIVEEMYPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L ++ + + +L F + PG ++R + L++ + IP
Sbjct: 267 TQLA----KGAYLGHITRHMLGLFQNMPGARQWRRHISENAHKPGSGLEVLQDALAKIPK 322
Query: 243 SV 244
+
Sbjct: 323 EL 324
>gi|170692264|ref|ZP_02883427.1| TIM-barrel protein, yjbN family [Burkholderia graminis C4D1M]
gi|170142694|gb|EDT10859.1| TIM-barrel protein, yjbN family [Burkholderia graminis C4D1M]
Length = 317
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDVVSVPVTVKHRIGVDAVEEYGFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPLKYEY Y L RDFP L +NGGI
Sbjct: 139 FVGTIAE-AGCDVFIVHARNAILKGLSPKENREIPPLKYEYAYQLKRDFPHLEIIINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L+ VM+GR AY NP Y L VD YG+ + LTR QV + Y
Sbjct: 198 RTLDEVETHLQH-VDGVMLGREAYHNP-YLLADVDARFYGSTQAPLTREQVEAQLIEYCA 255
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A + GTY + + + L + E G ++R
Sbjct: 256 AEMARGTY------LGAITRHALGLYRGEAGARGWRR 286
>gi|91783334|ref|YP_558540.1| tRNA-dihydrouridine synthase A [Burkholderia xenovorans LB400]
gi|91687288|gb|ABE30488.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia xenovorans
LB400]
Length = 333
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSVPVTVKHRIGVDAVEEYGFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 155 FVGTIAD-AGCNVFIVHARNAILKGLSPKENREIPPLKYDYAYQLKRDFPHLEIIINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L+ VM+GR AY NP Y L VD YG+ + LTR QV K Y
Sbjct: 214 KTLDEVETHLQH-VDGVMLGREAYHNP-YLLAGVDARFYGSADTPLTREQVEAKLIDYCA 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A + GTY + + + L + E G ++R
Sbjct: 272 AEMARGTY------LGAITRHALGLYRGEAGARGWRR 302
>gi|57339642|gb|AAW49808.1| hypothetical protein FTT0508 [synthetic construct]
Length = 362
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 134/234 (57%), Gaps = 11/234 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG+SLM +P+ V + + + N N+P+SVKCRIG D +DSY +L +
Sbjct: 118 NVGCPSERVK-KGNFGLSLMAEPELVADCVKAMKDNLNIPISVKCRIGYDHNDSYEELYN 176
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K + + IH+RK L+G+SP ENRTIP LKY+ Y++ +DFP+L +NGGI
Sbjct: 177 FVDKQVQ-AGIDYLCIHARKGWLSGLSPKENRTIPELKYDVVYSIKKDFPNLELGINGGI 235
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E+ L K VM+GR AY NP D Y P++ ++ ++ K Y
Sbjct: 236 TTIQEIQQHL-KYVDSVMIGREAYHNPM-LFKDFDNIFYNQPTTNISALEIAYKMAEY-- 291
Query: 183 AILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSFL 233
+ +N P+++ ++ K L+ F+ P +++R ++ A + V +FL
Sbjct: 292 --IKDQMDNDPYIKLNNITKHTLNLFNGLPNAKVYRRYLSENATKKEANVDTFL 343
>gi|83721523|ref|YP_443015.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis E264]
gi|167620175|ref|ZP_02388806.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis Bt4]
gi|257139245|ref|ZP_05587507.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis E264]
gi|83655348|gb|ABC39411.1| dihydrouridine synthase [Burkholderia thailandensis E264]
Length = 339
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 111/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAIEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+S + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 155 FVGTVAS-AGCEVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQLEIVINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L VD YGA TR V K Y
Sbjct: 214 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGVDARFYGATEPAPTREAVEAKLVEYCA 271
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 272 AELARGTY 279
>gi|386815146|ref|ZP_10102364.1| tRNA-U16,U17-dihydrouridine synthase [Thiothrix nivea DSM 5205]
gi|386419722|gb|EIJ33557.1| tRNA-U16,U17-dihydrouridine synthase [Thiothrix nivea DSM 5205]
Length = 328
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 4/172 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ + E ++ + A ++PV+VK RIG+D+ + Y L
Sbjct: 92 NVGCPSERVQ-KGAFGACLMAEPQLIAECVAAMQAAVSIPVTVKNRIGIDEQEDYAGLRQ 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS + + FI+H+RKA L G+SP ENR IPPL+YE Y L ++FPDL +NGGI
Sbjct: 151 FVSTVSE-AGCQTFIVHARKAWLKGLSPKENREIPPLRYELVYQLKQEFPDLEIIINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVV 174
T+++ LR VMVGR AY NPW L VD +YG +S R+ V+
Sbjct: 210 TTLEQCQQHLRH-VDGVMVGREAYHNPWL-LAQVDLVLYGTGTSFHNRKAVL 259
>gi|328950080|ref|YP_004367415.1| hypothetical protein Marky_0554 [Marinithermus hydrothermalis DSM
14884]
gi|328450404|gb|AEB11305.1| TIM-barrel protein, yjbN family [Marinithermus hydrothermalis DSM
14884]
Length = 339
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 131/248 (52%), Gaps = 16/248 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM DP+ V E + V V+VK RIG+D D Y L
Sbjct: 96 NVGCPSNRVQ-EGGFGACLMADPERVREITRAMREAAPV-VTVKHRIGIDHLDEYRHLAR 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ T FI+H+RKA L G+SP ENR +PPL+Y Y L +DFP+LT LNGG+
Sbjct: 154 FVETVAETGVT-VFIVHARKAWLQGLSPKENRAVPPLRYGEVYRLKQDFPELTIVLNGGV 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG---APSSGLTRRQVVEKYQI 179
T+D A L + VM+GRAAY+ PW G D ++G APS RR+VV
Sbjct: 213 RTLDAAMAHL-EHTDGVMIGRAAYETPWAWAG-ADQQVFGLDRAPS----RREVVMAMLP 266
Query: 180 YGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVA 239
Y +A L P +R + + LL+ F PG F+R ++ + A
Sbjct: 267 YIEARL---MEGVP-LRRIARHLLNLFKGAPGGRRFRRVLSEGLLDPTAGPELVQRALEA 322
Query: 240 IPDSVLDS 247
IPD+VLD
Sbjct: 323 IPDAVLDE 330
>gi|226940607|ref|YP_002795681.1| tRNA-dihydrouridine synthase A [Laribacter hongkongensis HLHK9]
gi|226715534|gb|ACO74672.1| Dihydrouridine synthase [Laribacter hongkongensis HLHK9]
Length = 339
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 124/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P V + + + T +PV+VK RIGVDD +++ + D
Sbjct: 105 NVGCPSERVQ-KGAFGACLMKEPGLVADCVRAMRDVTTLPVTVKHRIGVDDVEAFGFVSD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V++ + FI+H+R A+L G+SP ENR IPPLKY+Y + L +FPDL +NGGI
Sbjct: 164 FVGEVAAAGCST-FIVHARNAILKGLSPKENREIPPLKYDYAWRLKAEFPDLEILVNGGI 222
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE L VM+GR AY NP Y L VD YG TR +V+E+ Y D
Sbjct: 223 RTLDEAAEQLGH-VDGVMIGREAYHNP-YLLAGVDARFYGDEHPVPTRAEVIERLIPYVD 280
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L G VRD+ + +L + PG F++
Sbjct: 281 AHLAAGGK----VRDIARHVLGLVNGVPGARRFRQ 311
>gi|126175780|ref|YP_001051929.1| tRNA-dihydrouridine synthase A [Shewanella baltica OS155]
gi|386342526|ref|YP_006038892.1| yjbN family TIM-barrel protein [Shewanella baltica OS117]
gi|125998985|gb|ABN63060.1| TIM-barrel protein, yjbN family [Shewanella baltica OS155]
gi|334864927|gb|AEH15398.1| TIM-barrel protein, yjbN family [Shewanella baltica OS117]
Length = 339
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L
Sbjct: 104 NVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYAFLTQ 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS+ T F IH+RKA L G+SP ENR IPPL YE Y L RD+P L +NGGI
Sbjct: 163 FIDVVSAKGCT-DFTIHARKAWLQGLSPKENREIPPLDYERVYQLKRDYPALNIGINGGI 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L + VM+GR AYQNP Y L VD + G+ + ++R V+E Y +
Sbjct: 222 TTLEQAQLHLAQ-LDGVMMGREAYQNP-YILAQVDQVLCGSQKAVISREDVIEAMLPYIE 279
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + G + + + ++ F PG ++R
Sbjct: 280 AHLLSGG----RLNHITRHMIGLFQGLPGARAWRR 310
>gi|442610331|ref|ZP_21025054.1| tRNA dihydrouridine synthase A [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441748107|emb|CCQ11116.1| tRNA dihydrouridine synthase A [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 336
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 128/238 (53%), Gaps = 8/238 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +PK V E ++ + A ++PV+VK RIG+D+ DSY L I
Sbjct: 107 GCPSDRVQ-NGRFGACLMAEPKLVAECVAAMKAEVSIPVTVKTRIGIDEQDSYEFLTQLI 165
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+ IIH+RKA L G+SP ENR IPPL Y Y L +D+P L ++NGGI T
Sbjct: 166 EDCHDVG-CDDVIIHARKAWLKGLSPKENREIPPLDYPRVYQLKKDYPQLHVSINGGIKT 224
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E L + VM+GR AY NP + L VD IYG +T+ +VV Y +
Sbjct: 225 IEECQHHL-QFVDGVMIGREAYANP-FMLSQVDELIYGDAPFAMTKHEVVRSMYDYIETQ 282
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ T G+N H + + +L F ++ G LF+R +EE + +P+
Sbjct: 283 M-TQGSNFWH---IARHMLGIFQNQQGARLFRRHLSENGHKKTADIRVMEEALAFVPE 336
>gi|167582008|ref|ZP_02374882.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis TXDOH]
Length = 339
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 111/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAIEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+S + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 155 FVGTVAS-AGCEVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQLEIVINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L VD YGA TR V K Y
Sbjct: 214 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGVDARFYGATEPAPTREAVEAKLVEYCA 271
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 272 AELARGTY 279
>gi|392534629|ref|ZP_10281766.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas arctica A 37-1-2]
Length = 310
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 133/240 (55%), Gaps = 8/240 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E ++ + + ++PV+VK RIG+D+ DSY LC
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPQLVAECVAAMKSEVSIPVTVKTRIGIDEQDSYEFLCA 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
I + S FIIH+RKA LNG+SP ENR +PPL Y Y L +D+P L +LNGG+
Sbjct: 138 LI-EASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQLKKDYPQLDLSLNGGV 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VM+GR AY NP + L VD IYG ++ +R VV Y +
Sbjct: 197 KTIEQSLEHLQH-IDGVMIGREAYSNP-FMLNDVDEKIYGDAANTQSRHDVVRSMYDYIE 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ G N H + + +L F +PG F+R + + S +++ + +P+
Sbjct: 255 EEM-RLGANFWH---IARHMLGIFQGQPGARGFRRHLSESGHGKQADLSVMDKALSFVPE 310
>gi|163796265|ref|ZP_02190226.1| tRNA-dihydrouridine synthase A [alpha proteobacterium BAL199]
gi|159178407|gb|EDP62949.1| tRNA-dihydrouridine synthase A [alpha proteobacterium BAL199]
Length = 386
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 117/215 (54%), Gaps = 6/215 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P VG + + A ++PV+VKCRIGVDD D D
Sbjct: 147 NVGCPSDRVQ-SGRFGACLMREPVLVGRMVEAMRAAVSIPVTVKCRIGVDDQDP-GPALD 204
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+ + + R I+H+RKA L G+SP ENR +PPL Y+ AL PD+ LNGG+
Sbjct: 205 ALTAAVAAAGCRTLIVHARKAWLQGLSPKENRDVPPLDYDRVDALKATNPDMVVVLNGGL 264
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+D V AAL +G MVGRAAYQ PW L D I+GAPS+ + R VVE Y
Sbjct: 265 LDLDAVEAALARGLDGGMVGRAAYQTPW-VLADADRRIFGAPSTDIDRHAVVEAMAEYAG 323
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
G V+ V++ +L F PG ++R
Sbjct: 324 RARRDLGTP---VKSVVRHMLGLFQGLPGARAWRR 355
>gi|422005791|ref|ZP_16352957.1| tRNA-dihydrouridine synthase A [Leptospira santarosai serovar
Shermani str. LT 821]
gi|417255540|gb|EKT85011.1| tRNA-dihydrouridine synthase A [Leptospira santarosai serovar
Shermani str. LT 821]
Length = 344
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 135/248 (54%), Gaps = 7/248 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + + ++PV+VKCRIG+ ++ LC
Sbjct: 98 NVGCPSDRVR-EGNFGACLMKTPERVAELVFAMDTSVSIPVTVKCRIGIPGKETLEDLCR 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + + FI+H+R A+L G+SPA+NR +PPL+Y AL R+FP+L +NGGI
Sbjct: 157 FIECVRQ-AGVKRFIVHARIAILGGLSPAQNRQVPPLRYADVEALKREFPNLLIEINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E+ L K VM+GRAAY+ P Y VD+ + S L+R +V+ + + Y +
Sbjct: 216 RTIAEMRERL-KTNDGVMIGRAAYETP-YLFSEVDSLFFDDDSPSLSRGEVLLRMRDYVE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH G F+R + L + + IPD
Sbjct: 274 EVVLKEKNGKPH--HALRHILGLFHGVKGARSFRRTLTERMYHDYS-SDLLSDAVQEIPD 330
Query: 243 SVLDSPIE 250
LD ++
Sbjct: 331 DTLDLKLQ 338
>gi|89256833|ref|YP_514195.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
holarctica LVS]
gi|115315219|ref|YP_763942.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
holarctica OSU18]
gi|169656701|ref|YP_001429066.2| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|254369716|ref|ZP_04985726.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
holarctica FSC022]
gi|290954380|ref|ZP_06559001.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
holarctica URFT1]
gi|422939136|ref|YP_007012283.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
holarctica FSC200]
gi|423051205|ref|YP_007009639.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
holarctica F92]
gi|89144664|emb|CAJ79988.1| RNA dihydrouridine synthase A [Francisella tularensis subsp.
holarctica LVS]
gi|115130118|gb|ABI83305.1| tRNA dihydrouridine synthase A [Francisella tularensis subsp.
holarctica OSU18]
gi|157122675|gb|EDO66804.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
holarctica FSC022]
gi|164551769|gb|ABU62110.2| tRNA dihydrouridine synthase [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|407294287|gb|AFT93193.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
holarctica FSC200]
gi|421951927|gb|AFX71176.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
holarctica F92]
Length = 327
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 134/234 (57%), Gaps = 11/234 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG+SLM +P+ V + + + N N+P+SVKCRIG D +DSY +L +
Sbjct: 92 NVGCPSERVK-KGNFGLSLMAEPELVADCVKAMKDNLNIPISVKCRIGYDHNDSYEELYN 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K + + IH+RK L+G+SP ENRTIP LKY+ Y++ +DFP+L +NGGI
Sbjct: 151 FVDKQVQ-AGIDYLCIHARKGWLSGLSPKENRTIPELKYDVVYSIKKDFPNLELGINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E+ L K VM+GR AY NP D Y P++ ++ ++ K Y
Sbjct: 210 TTIQEIQQHL-KYVDSVMIGREAYHNPM-LFKDFDNIFYNQPTTNISALEIAYKMAEY-- 265
Query: 183 AILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSFL 233
+ +N P+++ ++ K L+ F+ P +++R ++ A + V +FL
Sbjct: 266 --IKDQMDNDPYIKLNNITKHTLNLFNGLPNAKVYRRYLSENATKKEANVDTFL 317
>gi|402845185|ref|ZP_10893528.1| tRNA dihydrouridine synthase A [Klebsiella sp. OBRC7]
gi|402271761|gb|EJU20998.1| tRNA dihydrouridine synthase A [Klebsiella sp. OBRC7]
Length = 332
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 126/242 (52%), Gaps = 11/242 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 157 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMAINGGI 216
Query: 123 NTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
+++E L AH VMVGR AYQNP L VD I+G VV Y
Sbjct: 217 KSLEEAKQHL---AHMDGVMVGREAYQNPG-ILASVDREIFGVEGIDADPVSVVRAMYPY 272
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
+ L +N ++ V + +L F PG ++R + LE+ + +
Sbjct: 273 IEREL----SNGTYLGHVTRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEQALKLV 328
Query: 241 PD 242
D
Sbjct: 329 AD 330
>gi|269961484|ref|ZP_06175848.1| NifR3/Smm1 family protein [Vibrio harveyi 1DA3]
gi|269833861|gb|EEZ87956.1| NifR3/Smm1 family protein [Vibrio harveyi 1DA3]
Length = 369
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 132/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 133 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDVVDIPVTVKTRIGIDDQDSYEFLTD 191
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 192 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLTIAINGGV 251
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +
Sbjct: 252 KSLEEAKDHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSNAPVKKRSEIVEEMYPYIE 309
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A L ++ + + +L F + PG ++R + L++ + IP
Sbjct: 310 AQLA----KGAYLGHISRHMLGLFQNMPGARQWRRHISENAHKPGSGLEVLQDALAKIPK 365
Query: 243 SV 244
+
Sbjct: 366 EL 367
>gi|423105940|ref|ZP_17093641.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5242]
gi|376379248|gb|EHS92002.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5242]
Length = 313
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 126/243 (51%), Gaps = 11/243 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 79 NVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 138 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMAINGGI 197
Query: 123 NTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
+++E L AH VMVGR AYQNP L VD I+G VV Y
Sbjct: 198 KSLEEAKQHL---AHMDGVMVGREAYQNPG-ILASVDREIFGVEGIDADPVSVVRAMYPY 253
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
+ L +N ++ V + +L F PG ++R + LE+ + +
Sbjct: 254 IEREL----SNGTYLGHVTRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEQALKLV 309
Query: 241 PDS 243
D
Sbjct: 310 ADK 312
>gi|292490501|ref|YP_003525940.1| TIM-barrel protein, yjbN family [Nitrosococcus halophilus Nc4]
gi|291579096|gb|ADE13553.1| TIM-barrel protein, yjbN family [Nitrosococcus halophilus Nc4]
Length = 340
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 122/217 (56%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM++P+ V E ++ +A +PV+VK RIGVD+ DSY L
Sbjct: 106 NVGCPSDRVQS-GRFGACLMMEPELVAECVAAMAQTVQLPVTVKTRIGVDEQDSYEALTR 164
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS + R FI+H+RKA L G+SP ENR PPL+YE A+ +DFP L +NGGI
Sbjct: 165 FINTVSQ-AGCRTFILHARKAWLQGLSPKENREKPPLRYEVVRAIKQDFPHLEVVINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L +M+GRAAY NP Y L VD YG TR ++E + Y +
Sbjct: 224 ATLEEAQEQLTL-LDGIMIGRAAYHNP-YLLAQVDRYFYGDFHPLPTRHGIMEAFLPYVE 281
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G Y + + + +L F +PG ++R
Sbjct: 282 EQLAQGIY------LSRITRHILGLFQGQPGARAWRR 312
>gi|429111836|ref|ZP_19173606.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 507]
gi|426312993|emb|CCJ99719.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 507]
Length = 331
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 119/217 (54%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGRFGACLMGEAQLVADCVRAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY-- 180
T+D+V L VMVGR AYQNP L VD I+G VV Y
Sbjct: 216 KTLDDVKTHLEH-MDGVMVGREAYQNPG-ILASVDREIFGLDVPDADPVAVVRAMYPYIE 273
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
G+ GTY + V + +L F PG ++R
Sbjct: 274 GELAKGTY------LGHVTRHMLGLFQGIPGARQWRR 304
>gi|395761105|ref|ZP_10441774.1| tRNA-dihydrouridine synthase A [Janthinobacterium lividum PAMC
25724]
Length = 317
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 123/215 (57%), Gaps = 5/215 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++ V+VK RIG+DD +SY+ + D
Sbjct: 80 NCGCPSERVQ-KGAFGACLMAEPQLVADCVKAMRDVVDIDVTVKHRIGIDDSESYDFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + + FI+H+R A+L G+SP ENR +PPLKY+Y Y L RDFP F +NGGI
Sbjct: 139 FVGTVAD-AGCKTFIVHARNAILKGLSPKENREVPPLKYDYAYRLKRDFPQFEFIINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE++ L+ VM+GR AY NP Y + D YG + TR QV+E Y
Sbjct: 198 KTLDEIDLHLQH-LDGVMLGREAYHNP-YLMAQFDQRYYGDDTPVKTREQVLEVMIPYIR 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L R + V + +L + PG F++
Sbjct: 256 VQLEKEA-GRLKLNSVTRHMLGLMQNLPGARGFRQ 289
>gi|425079376|ref|ZP_18482473.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405607888|gb|EKB80840.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
Length = 313
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 117/217 (53%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 79 NVGCPSDRVQ-NGTFGACLMGNAPLVADCIKAMRDAVSIPVTVKTRIGIDDQDSYEFLCD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y + L RDFP LT +NGGI
Sbjct: 138 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQLKRDFPHLTMAINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 198 KSLDEARVQLEH-MDGVMVGREAYQNP-DILASVDREIFGVAGADADPVAVVRAMYPYIE 255
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 256 RELSKGTYLGH------ITRHMLGLFQGIPGARQWRR 286
>gi|212555091|gb|ACJ27545.1| TIM-barrel protein, yjbN family [Shewanella piezotolerans WP3]
Length = 370
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E + + ++PV+VK RIG+D+ DSY L +
Sbjct: 135 NVGCPSDRVQ-NGRFGACLMAEPTLVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTE 193
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V ++ FIIH+RKA L G+SP ENR IP L YE Y L RD+ DL+ ++NGG+
Sbjct: 194 FIDTVKAVG-CNDFIIHARKAWLQGLSPKENREIPELDYERVYQLKRDYADLSISINGGV 252
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L++ VMVGR AYQNP Y L VD + G ++R V+EK Y +
Sbjct: 253 KTLAECKTHLQQ-LDGVMVGREAYQNP-YILAEVDQQLCGIDKPVMSRDAVLEKLLPYIE 310
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + V + ++ F E G+ +++R
Sbjct: 311 KHLQAGGK----LNHVTRHIIGLFQGEVGSRVWRR 341
>gi|414072094|ref|ZP_11408047.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. Bsw20308]
gi|410805440|gb|EKS11453.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. Bsw20308]
Length = 329
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 132/240 (55%), Gaps = 8/240 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E ++ + + +PV+VK RIG+D+ DSY LC
Sbjct: 98 NVGCPSDRVQ-NGRFGACLMAEPQLVAECVAAMKSEVTIPVTVKTRIGIDEQDSYEFLCA 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
I + S FIIH+RKA LNG+SP ENR +PPL Y Y L +D+P L +LNGG+
Sbjct: 157 LI-EASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQLKKDYPQLDLSLNGGV 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VM+GR AY NP + L VD IYG ++ +R VV Y +
Sbjct: 216 KTIEQSLEHLQH-IDGVMIGREAYSNP-FMLNDVDEKIYGDTANTQSRHDVVRSMYSYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ G N H + + +L F +PG F+R + + S +++ + +P+
Sbjct: 274 EEM-RLGANFWH---IARHMLGIFQGQPGARGFRRHLSESGHGKQADLSVMDKALSFVPE 329
>gi|310816167|ref|YP_003964131.1| tRNA-dihydrouridine synthase A [Ketogulonicigenium vulgare Y25]
gi|385233670|ref|YP_005795012.1| tRNA-dihydrouridine synthase (NifR3-like protein) protein
[Ketogulonicigenium vulgare WSH-001]
gi|308754902|gb|ADO42831.1| tRNA-dihydrouridine synthase A [Ketogulonicigenium vulgare Y25]
gi|343462581|gb|AEM41016.1| tRNA-dihydrouridine synthase (NifR3-like protein) protein
[Ketogulonicigenium vulgare WSH-001]
Length = 329
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 118/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P V E +S + A + V V++KCRIGVDD + + L
Sbjct: 94 NCGCPSDRVQS-GAFGAVLMRQPDLVAEILSEMIAASPVEVTLKCRIGVDDQEPSDILPA 152
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KV++ S R IIH+RKA L G+SP ENR IPPL Y+ +A+ FPDL +LNGG+
Sbjct: 153 FLEKVAA-SGVRRVIIHARKAWLQGLSPKENRDIPPLDYDLVFAMKAAFPDLHISLNGGV 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E A L +G VM+GRAAY P LG D I+G + V + + D
Sbjct: 212 KSLAEAQALLDRGLDGVMIGRAAYHEPADILGQADPLIWGEGHAISAEEAVHAMFPVIED 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ R H + + +L F PG ++R
Sbjct: 272 HL---RAGGRLH--QITRHMLGAFAGRPGARQWRR 301
>gi|172037930|ref|YP_001804431.1| tRNA-dihydrouridine synthase A [Cyanothece sp. ATCC 51142]
gi|171699384|gb|ACB52365.1| putative dihydrouridine synthase TIM-barrel protein nifR3
[Cyanothece sp. ATCC 51142]
Length = 342
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 123/216 (56%), Gaps = 10/216 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V + + + +PV+VK RIG+D DSY +
Sbjct: 101 NVGCPSDRVQS-GHFGACLMANPELVAQCVEKMQQGVTIPVTVKHRIGIDHQDSYEDMAR 159
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K+ S + + F +H+RKA L G+SP ENR IPPL+Y+ Y L ++FP L +NGGI
Sbjct: 160 FV-KIVSEAGCQRFTVHARKAWLQGLSPKENRNIPPLRYQEVYRLKQEFPQLFIEINGGI 218
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++V L K VM+GR+AY NP Y L VD IY + LTR Q++EK Y D
Sbjct: 219 TNLEQVRNHL-KLVDAVMIGRSAYDNP-YLLATVDRDIYRDKVTQLTRHQIIEKMLPYID 276
Query: 183 AILGTYGNNRPH-VRDVMKPLLHFFHSEPGNGLFKR 217
+ +R H + + + LL F PG +KR
Sbjct: 277 DWV-----SRGHKLHKISRHLLAIFSGIPGTKAWKR 307
>gi|208778989|ref|ZP_03246335.1| RNA dihydrouridine synthase A [Francisella novicida FTG]
gi|254372562|ref|ZP_04988051.1| RNA dihydrouridine synthase A [Francisella tularensis subsp.
novicida GA99-3549]
gi|254374021|ref|ZP_04989503.1| RNA dihydrouridine synthase A [Francisella novicida GA99-3548]
gi|151570289|gb|EDN35943.1| RNA dihydrouridine synthase A [Francisella novicida GA99-3549]
gi|151571741|gb|EDN37395.1| RNA dihydrouridine synthase A [Francisella novicida GA99-3548]
gi|208744789|gb|EDZ91087.1| RNA dihydrouridine synthase A [Francisella novicida FTG]
Length = 327
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 134/234 (57%), Gaps = 11/234 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG+SLM +P+ V + + + N N+P+SVKCRIG D +DSY +L +
Sbjct: 92 NVGCPSERVK-KGNFGLSLMAEPELVADCVKAMKDNLNIPISVKCRIGYDHNDSYEELYN 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K + + IH+RK L+G+SP ENRTIP LKY+ Y++ +DFP+L +NGGI
Sbjct: 151 FVDKQVQ-AGVDYLCIHARKGWLSGLSPKENRTIPELKYDVVYSIKKDFPNLELGINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E+ L K VM+GR AY NP D Y P++ ++ ++ K Y
Sbjct: 210 TTIQEIQQHL-KYVDSVMIGREAYHNPM-LFKDFDNIFYNQPTTNISALEIAYKMAEY-- 265
Query: 183 AILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSFL 233
+ +N P+++ ++ K L+ F+ P +++R ++ A + V +FL
Sbjct: 266 --IKDQMDNDPYIKLNNITKHTLNLFNGLPNAKVYRRYLSENATKKEANVDTFL 317
>gi|375258454|ref|YP_005017624.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca KCTC 1686]
gi|397655399|ref|YP_006496101.1| tRNA dihydrouridine synthase A [Klebsiella oxytoca E718]
gi|365907932|gb|AEX03385.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca KCTC 1686]
gi|394344113|gb|AFN30234.1| tRNA dihydrouridine synthase A [Klebsiella oxytoca E718]
Length = 332
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 126/242 (52%), Gaps = 11/242 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYGFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 157 FIETVSVKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMAINGGI 216
Query: 123 NTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
+++E L AH VMVGR AYQNP L VD I+G VV Y
Sbjct: 217 KSLEEAKQHL---AHMDGVMVGREAYQNPG-ILASVDREIFGVEGIDADPVSVVRAMYPY 272
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
+ L +N ++ V + +L F PG ++R + LE+ + +
Sbjct: 273 IEREL----SNGTYLGHVTRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEQALKLV 328
Query: 241 PD 242
D
Sbjct: 329 AD 330
>gi|438047594|ref|ZP_20856075.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|435319672|gb|ELO92477.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
Length = 304
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 117/207 (56%), Gaps = 7/207 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCDFI
Sbjct: 100 GCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFI 158
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI +
Sbjct: 159 DTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKS 218
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 219 LEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIERE 276
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPG 211
L + ++ + + +L F PG
Sbjct: 277 L----SQGAYLGHITRHMLGLFQGIPG 299
>gi|429106337|ref|ZP_19168206.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 681]
gi|426293060|emb|CCJ94319.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 681]
Length = 331
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 119/217 (54%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGRFGACLMGEAQLVADCVRAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY-- 180
T+D+V L VMVGR AYQNP L VD I+G VV Y
Sbjct: 216 KTLDDVKTHLEH-MDGVMVGREAYQNPG-ILASVDREIFGLDVPDADPVAVVRAMYPYIE 273
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
G+ GTY + V + +L F PG ++R
Sbjct: 274 GELAKGTY------LGHVTRHMLGLFQGIPGARQWRR 304
>gi|354556623|ref|ZP_08975915.1| TIM-barrel protein, yjbN family [Cyanothece sp. ATCC 51472]
gi|353551397|gb|EHC20801.1| TIM-barrel protein, yjbN family [Cyanothece sp. ATCC 51472]
Length = 337
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 123/216 (56%), Gaps = 10/216 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V + + + +PV+VK RIG+D DSY +
Sbjct: 96 NVGCPSDRVQS-GHFGACLMANPELVAQCVEKMQQGVTIPVTVKHRIGIDHQDSYEDMAR 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K+ S + + F +H+RKA L G+SP ENR IPPL+Y+ Y L ++FP L +NGGI
Sbjct: 155 FV-KIVSEAGCQRFTVHARKAWLQGLSPKENRNIPPLRYQEVYRLKQEFPQLFIEINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++V L K VM+GR+AY NP Y L VD IY + LTR Q++EK Y D
Sbjct: 214 TNLEQVRNHL-KLVDAVMIGRSAYDNP-YLLATVDRDIYRDKVTQLTRHQIIEKMLPYID 271
Query: 183 AILGTYGNNRPH-VRDVMKPLLHFFHSEPGNGLFKR 217
+ +R H + + + LL F PG +KR
Sbjct: 272 DWV-----SRGHKLHKISRHLLAIFSGIPGTKAWKR 302
>gi|410450803|ref|ZP_11304833.1| tRNA dihydrouridine synthase A [Leptospira sp. Fiocruz LV3954]
gi|410015346|gb|EKO77448.1| tRNA dihydrouridine synthase A [Leptospira sp. Fiocruz LV3954]
Length = 344
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 135/248 (54%), Gaps = 7/248 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V E + + + ++PV+VKCRIG+ ++ LC
Sbjct: 98 NVGCPSDRVR-EGNFGACLMKNPERVAELVFAMDTSVSIPVTVKCRIGIPGKETLEDLCR 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + + FI+H+R A+L G+SPA+NR +PPL+Y AL R+FPDL +NGGI
Sbjct: 157 FIECVRQ-AGVKRFIVHARIAILGGLSPAQNRQVPPLRYADVEALKREFPDLLIEINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E+ L K VM+GRAAY+ P Y VD+ + S L+R +V+ + + Y +
Sbjct: 216 RTIAEMRERL-KTNDGVMIGRAAYETP-YLFSEVDSLFFNDDSPSLSRGEVLLRMRDYVE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH G F+R + L + + I D
Sbjct: 274 EVVLKEKNGKPH--HALRHILGLFHGVKGARSFRRTLTERMYHDYS-SDLLSDAVQEIRD 330
Query: 243 SVLDSPIE 250
LD ++
Sbjct: 331 DTLDLKLQ 338
>gi|423126869|ref|ZP_17114548.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5250]
gi|376396338|gb|EHT08979.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5250]
Length = 313
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 126/243 (51%), Gaps = 11/243 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 79 NVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 138 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMAINGGI 197
Query: 123 NTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
+++E L AH VMVGR AYQNP L VD I+G VV Y
Sbjct: 198 KSLEEAKLHL---AHMDGVMVGREAYQNPG-ILASVDREIFGVEGVDADPVSVVRAIYPY 253
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
+ L +N ++ V + +L F PG ++R + LE+ + +
Sbjct: 254 IEREL----SNGTYLGHVTRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEQALKLV 309
Query: 241 PDS 243
D
Sbjct: 310 ADK 312
>gi|331655869|ref|ZP_08356857.1| tRNA-dihydrouridine synthase A [Escherichia coli M718]
gi|331046223|gb|EGI18313.1| tRNA-dihydrouridine synthase A [Escherichia coli M718]
Length = 345
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 120/215 (55%), Gaps = 11/215 (5%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCDFI
Sbjct: 113 GCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFI 171
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS FIIH+RKA L+G+SP ENR IP L Y Y L RDFP LT ++NGGI +
Sbjct: 172 NTVSGKGECEMFIIHARKAWLSGLSPKENREIPALDYPRVYQLKRDFPHLTMSINGGIKS 231
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 232 LEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIECE 289
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 290 LSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|424143901|ref|ZP_17875730.1| tRNA-dihydrouridine synthase [Escherichia coli PA14]
gi|390695683|gb|EIN70198.1| tRNA-dihydrouridine synthase [Escherichia coli PA14]
Length = 339
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 105 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L DFP LT ++NGGI
Sbjct: 164 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKHDFPHLTMSINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 224 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 281
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 282 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 312
>gi|67921570|ref|ZP_00515088.1| Dihydrouridine synthase TIM-barrel protein yjbN [Crocosphaera
watsonii WH 8501]
gi|67856682|gb|EAM51923.1| Dihydrouridine synthase TIM-barrel protein yjbN [Crocosphaera
watsonii WH 8501]
Length = 334
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 121/216 (56%), Gaps = 10/216 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V + + + N+PV+VK RIG+DD DSY ++
Sbjct: 88 NVGCPSDRVQS-GHFGACLMAKPELVAQCVQKMQQGVNIPVTVKQRIGIDDQDSYEEMAR 146
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ R F IH+RKA L G+SP ENR IPPL+Y+ Y L +DFP L +NGGI
Sbjct: 147 FVAIVAEAGCQR-FTIHARKAWLKGLSPKENRNIPPLRYQDVYRLKQDFPHLLIEINGGI 205
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++V+ L K VM+GRAAY NP Y VD IY TR +++EK Y D
Sbjct: 206 TNLEQVDNHL-KIVDAVMIGRAAYDNP-YLFATVDRDIYQEDIIPATRHEIIEKMLPYID 263
Query: 183 AILGTYGNNRPH-VRDVMKPLLHFFHSEPGNGLFKR 217
+ +R H + + + LL F PG +KR
Sbjct: 264 -----HWVSRGHKLHRISRHLLAMFAGIPGTKAWKR 294
>gi|56707647|ref|YP_169543.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670118|ref|YP_666675.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis FSC198]
gi|134302420|ref|YP_001122390.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis WY96-3418]
gi|254370162|ref|ZP_04986168.1| tRNA dihydrouridine synthase A [Francisella tularensis subsp.
tularensis FSC033]
gi|254874464|ref|ZP_05247174.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379716905|ref|YP_005305241.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis TIGB03]
gi|379725509|ref|YP_005317695.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis TI0902]
gi|385794270|ref|YP_005830676.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis NE061598]
gi|421752285|ref|ZP_16189314.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis AS_713]
gi|421754150|ref|ZP_16191129.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 831]
gi|421755138|ref|ZP_16192091.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 80700075]
gi|421757875|ref|ZP_16194741.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 80700103]
gi|421759713|ref|ZP_16196540.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 70102010]
gi|424675033|ref|ZP_18111945.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 70001275]
gi|56604139|emb|CAG45141.1| RNA dihydrouridine synthase A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320451|emb|CAL08524.1| RNA dihydrouridine synthase A [Francisella tularensis subsp.
tularensis FSC198]
gi|134050197|gb|ABO47268.1| dihydrouridine synthase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|151568406|gb|EDN34060.1| tRNA dihydrouridine synthase A [Francisella tularensis subsp.
tularensis FSC033]
gi|254840463|gb|EET18899.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158805|gb|ADA78196.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis NE061598]
gi|377826958|gb|AFB80206.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis TI0902]
gi|377828582|gb|AFB78661.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis TIGB03]
gi|409085175|gb|EKM85324.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 831]
gi|409085450|gb|EKM85591.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis AS_713]
gi|409089012|gb|EKM89067.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 80700075]
gi|409090092|gb|EKM90115.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 70102010]
gi|409091411|gb|EKM91409.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 80700103]
gi|417434288|gb|EKT89247.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 70001275]
Length = 327
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 134/234 (57%), Gaps = 11/234 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG+SLM +P+ V + + + N N+P+SVKCRIG D +DSY +L +
Sbjct: 92 NVGCPSERVK-KGNFGLSLMAEPELVADCVKAMKDNLNIPISVKCRIGYDHNDSYEELYN 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K + + IH+RK L+G+SP ENRTIP LKY+ Y++ +DFP+L +NGGI
Sbjct: 151 FVDKQVQ-AGIDYLCIHARKGWLSGLSPKENRTIPELKYDVVYSIKKDFPNLELGINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E+ L K VM+GR AY NP D Y P++ ++ ++ K Y
Sbjct: 210 TTIQEIQQHL-KYVDSVMIGREAYHNPM-LFKDFDNIFYNQPTTNISALEIAYKMAEY-- 265
Query: 183 AILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSFL 233
+ +N P+++ ++ K L+ F+ P +++R ++ A + V +FL
Sbjct: 266 --IKDQMDNDPYIKLNNITKHTLNLFNGLPNAKVYRRYLSENATKKEANVDTFL 317
>gi|423728349|ref|ZP_17702088.1| tRNA-dihydrouridine synthase [Escherichia coli PA31]
gi|424150269|ref|ZP_17881622.1| tRNA-dihydrouridine synthase [Escherichia coli PA15]
gi|390696874|gb|EIN71315.1| tRNA-dihydrouridine synthase [Escherichia coli PA15]
gi|390736081|gb|EIO07432.1| tRNA-dihydrouridine synthase [Escherichia coli PA31]
Length = 345
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L DFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKHDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|413962803|ref|ZP_11402030.1| tRNA-dihydrouridine synthase A [Burkholderia sp. SJ98]
gi|413928635|gb|EKS67923.1| tRNA-dihydrouridine synthase A [Burkholderia sp. SJ98]
Length = 334
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 113/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMKEPQLVADCVKAMRDAVSIPVTVKHRIGVDTVEEYEFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPLKYEY Y L RDFP L ++NGGI
Sbjct: 155 FVGTIAD-AGCEVFIVHARNAILKGLSPKENREIPPLKYEYAYRLKRDFPQLEISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY-- 180
T+DEV L K VM+GR AY NP Y L VDT YGA + +R ++ Y
Sbjct: 214 KTLDEVEEHL-KHVDGVMLGREAYHNP-YVLAGVDTRFYGANTPVPSREEIEAGLIDYAR 271
Query: 181 GDAILGTY 188
G+ GTY
Sbjct: 272 GELTRGTY 279
>gi|416384996|ref|ZP_11684716.1| tRNA-dihydrouridine synthase A [Crocosphaera watsonii WH 0003]
gi|357264948|gb|EHJ13769.1| tRNA-dihydrouridine synthase A [Crocosphaera watsonii WH 0003]
Length = 325
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 121/216 (56%), Gaps = 10/216 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V + + + N+PV+VK RIG+DD DSY ++
Sbjct: 79 NVGCPSDRVQS-GHFGACLMAKPELVAQCVQKMQQGVNIPVTVKQRIGIDDQDSYEEMAR 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ R F IH+RKA L G+SP ENR IPPL+Y+ Y L +DFP L +NGGI
Sbjct: 138 FVAIVAEAGCQR-FTIHARKAWLKGLSPKENRNIPPLRYQDVYRLKQDFPHLLIEINGGI 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++V+ L K VM+GRAAY NP Y VD IY TR +++EK Y D
Sbjct: 197 TNLEQVDNHL-KIVDAVMIGRAAYDNP-YLFATVDRDIYQEDIIPATRHEIIEKMLPYID 254
Query: 183 AILGTYGNNRPH-VRDVMKPLLHFFHSEPGNGLFKR 217
+ +R H + + + LL F PG +KR
Sbjct: 255 -----HWVSRGHKLHRISRHLLAMFAGIPGTKAWKR 285
>gi|428935408|ref|ZP_19008884.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae JHCK1]
gi|426300609|gb|EKV62885.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae JHCK1]
Length = 332
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 117/217 (53%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGTFGACLMGNAPLVADCIKAMRDAVSIPVTVKTRIGIDDQDSYEFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y + L RDFP LT +NGGI
Sbjct: 157 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQLKRDFPHLTMAINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 217 KSLDEARVQLEH-MDGVMVGREAYQNP-DILASVDREIFGVAGADADPVAVVRAMYPYIE 274
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 275 RELSKGTYLGH------ITRHMLGLFQGIPGARQWRR 305
>gi|384919931|ref|ZP_10019957.1| tRNA-dihydrouridine synthase A [Citreicella sp. 357]
gi|384466192|gb|EIE50711.1| tRNA-dihydrouridine synthase A [Citreicella sp. 357]
Length = 343
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 124/241 (51%), Gaps = 13/241 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P V + ++ + NV V+VKCRIGVD+ + L
Sbjct: 108 NCGCPSDRVQS-GAFGAVLMQSPGLVADCVAAMREAVNVEVTVKCRIGVDEQEPREALPA 166
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +S+ R +IH+RKA L G+SP ENR +PPL Y + RDFPDL ++NGGI
Sbjct: 167 FLEAISNAGCGR-VVIHARKAWLKGLSPKENRDVPPLDYALVTEMKRDFPDLHISINGGI 225
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++D A L +G VM+GR+AY PW L D I+G + ++ V + Y +
Sbjct: 226 ASLDAAQALLAQGLDGVMIGRSAYHQPWDILADADRRIFGLERAPISPETAVRRMLPYIE 285
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
L G + V + +L F PG ++R + A +T + +F+ E
Sbjct: 286 NHLTQGG----RLNQVTRHMLGLFAGRPGARSWRRLLSEEASRDGAGLETIERGLAFISE 341
Query: 236 T 236
Sbjct: 342 A 342
>gi|146309919|ref|YP_001174993.1| tRNA-dihydrouridine synthase A [Enterobacter sp. 638]
gi|145316795|gb|ABP58942.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacter sp. 638]
Length = 331
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 120/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADGIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FIDTVAGKGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 216 KSLEEAKTHLQH-MDGVMVGREAYQNPG-ILATVDREIFGIEGADSDPVAVVRAMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ V + +L F PG ++R
Sbjct: 274 REL----SNGTYLGHVTRHMLGLFQGIPGARQWRR 304
>gi|251788352|ref|YP_003003073.1| TIM-barrel protein, yjbN family [Dickeya zeae Ech1591]
gi|247536973|gb|ACT05594.1| TIM-barrel protein, yjbN family [Dickeya zeae Ech1591]
Length = 344
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 121/221 (54%), Gaps = 19/221 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + ++ + +PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGRFGACLMAEAQLVADCVAAMRERVGIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FI+H+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 170 FIRTVSEQGGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPSLTVAINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVE------K 176
T+ + L+ VMVGR AYQNP L VD+ ++G + + VV+ +
Sbjct: 230 KTLADAQQHLQH-VDGVMVGREAYQNPG-MLAQVDSELFGVDRAVPDQVAVVQAMYPYIE 287
Query: 177 YQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
++ G A LG + + +L F PG ++R
Sbjct: 288 RELSGGASLG----------HITRHMLGLFQGIPGARQWRR 318
>gi|386266637|ref|YP_005830129.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R2846]
gi|309973873|gb|ADO97074.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R2846]
Length = 327
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 130/239 (54%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + + +PV+VK R G+D+ DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRTGIDELDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FIIH+RKA L+G+S ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 155 FIEKVQG-KGCQEFIIHARKAWLSGLSAKENREIPPLDYARVYQLKRDFPHLTIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LG +D A++ + +T + V+ Y +
Sbjct: 214 KTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVQSMLPYIE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L N H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 272 QQL----NQGIHLNHIVRHMLGAFQNCKGARQWRRYLSENAFKQGAGVEVIETALSFVE 326
>gi|309787535|ref|ZP_07682147.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1617]
gi|308925113|gb|EFP70608.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1617]
Length = 339
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LC
Sbjct: 105 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCG 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 164 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 224 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 281
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 282 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 312
>gi|82779541|ref|YP_405890.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae Sd197]
gi|81243689|gb|ABB64399.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 345
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LC
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCG 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|403059923|ref|YP_006648140.1| yjbN family TIM-barrel protein [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807249|gb|AFR04887.1| TIM-barrel protein, yjbN family [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 340
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 121/219 (55%), Gaps = 19/219 (8%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + V + + + +T++P++VK RIG+DD DSY LCDFI
Sbjct: 109 GCPSDRVQ-NGRFGACLMGEAALVADCIKAMKDSTSIPITVKTRIGIDDQDSYEFLCDFI 167
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ FI+H+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+ T
Sbjct: 168 QTVAERGECETFIVHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPALTIAINGGVKT 227
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVE------KYQ 178
++E L+ VM+GR AYQNP L VD ++G ++ VV +++
Sbjct: 228 LEEAKTHLQH-LDGVMMGREAYQNPG-ILAQVDRELFGVDTATPDLAGVVRAMYPYIEHE 285
Query: 179 IYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ G A LG + + +L F PG ++R
Sbjct: 286 LSGGASLG----------HITRHMLGMFQGIPGARQWRR 314
>gi|338739151|ref|YP_004676113.1| tRNA-dihydrouridine synthase [Hyphomicrobium sp. MC1]
gi|337759714|emb|CCB65545.1| tRNA-dihydrouridine synthase [Hyphomicrobium sp. MC1]
Length = 334
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 125/235 (53%), Gaps = 8/235 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V +S + + VPVSVKCRIG+DD D+ L
Sbjct: 92 NVGCPSDRVQ-EGRFGACLMAEPELVAACVSAMRESQPVPVSVKCRIGIDDQDAEADLTR 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ T F++H+RKA L G+SP ENR +PPL Y+ Y L PDLT +NGGI
Sbjct: 151 FIDVVADTGCT-SFVVHARKAWLKGLSPKENREVPPLDYQRVYRLKARRPDLTIVINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L + VM+GRAAYQNP Y L VD AI+ S+ TR + + Y +
Sbjct: 210 ETIADAETHL-EHVDGVMLGRAAYQNP-YILADVDRAIFADASAPPTRGEALTDLLPYVE 267
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETI 237
+ G + +V + +L +H +P F+R + + L E I
Sbjct: 268 RHVANGGR----LSNVTRHILGIYHGQPRGRAFRRLLSESATSASATAEVLSEAI 318
>gi|395233275|ref|ZP_10411517.1| tRNA-dihydrouridine synthase A [Enterobacter sp. Ag1]
gi|394732321|gb|EJF32016.1| tRNA-dihydrouridine synthase A [Enterobacter sp. Ag1]
Length = 334
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 118/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGRFGACLMGEAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 157 FIGTVAGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTMAINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L VMVGR AYQNP L VD I+GA + VV Y +
Sbjct: 217 KTLEEAKTHLEH-LDGVMVGREAYQNPGL-LTTVDREIFGADVADSDPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L N ++ V + +L F PG ++R
Sbjct: 275 RELA----NGTYLGHVTRHMLGLFQGIPGARQWRR 305
>gi|304313001|ref|YP_003812599.1| tRNA-dihydrouridine synthase A [gamma proteobacterium HdN1]
gi|301798734|emb|CBL46967.1| tRNA-dihydrouridine synthase A [gamma proteobacterium HdN1]
Length = 357
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 118/215 (54%), Gaps = 12/215 (5%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LM P V + + + +N+P++VKCRIG+DD D L DFI
Sbjct: 128 GCPSDRVQ-EGAFGACLMATPNIVADCVKAMQDASNLPITVKCRIGIDDQDEEQGLQDFI 186
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V + + + FI+H+RKA L G+SP ENR IPPL Y + L +DFPDL +NGG T
Sbjct: 187 ETVQA-AGCKTFIVHARKAWLKGLSPKENREIPPLNYPRVHRLKKDFPDLELIINGGFKT 245
Query: 125 VDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+DE L AH VM+GR AY NP L D I+GA ++ + R ++ K Y +
Sbjct: 246 LDECAEQL---AHLDGVMIGREAYHNP-MVLADADQRIFGATNAPICREALIHKMHAYAE 301
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
Y + V+ + + +L H PG ++R
Sbjct: 302 R---QYRDGVA-VKHITRHMLGLLHGIPGGRRWRR 332
>gi|359435578|ref|ZP_09225772.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20652]
gi|357917733|dbj|GAA62021.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20652]
Length = 313
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 132/240 (55%), Gaps = 8/240 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + N+PV+VK RIG+D+ DSY LC
Sbjct: 82 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKNEVNIPVTVKTRIGIDEQDSYEFLCA 140
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
I + S FIIH+RKA LNG+SP ENR +PPL Y Y L +D+P L +LNGG+
Sbjct: 141 LI-EASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQLKKDYPQLDLSLNGGV 199
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VM+GR AY NP + L VD IYG ++ +R VV Y +
Sbjct: 200 KTIEQSLEHLQH-IDGVMIGREAYSNP-FMLNDVDEKIYGDAANTQSRHDVVRSMYDYIE 257
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ G N H + + +L F +PG F+R + + S +++ + +P+
Sbjct: 258 EEM-RLGANFWH---IARHMLGIFQGQPGARGFRRHLSESGHGKQADLSVMDKALSFVPE 313
>gi|392977169|ref|YP_006475757.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392323102|gb|AFM58055.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 331
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVAGKGECGMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
++DE L AH VMVGR AYQNP L VD I+G + VV Y
Sbjct: 216 KSLDEAKTHL---AHMDGVMVGREAYQNPG-ILATVDREIFGVEGADSDPVAVVRAMYPY 271
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ L +N ++ + + +L F PG ++R
Sbjct: 272 IEREL----SNGTYLGHITRHMLGLFQGIPGARQWRR 304
>gi|373950890|ref|ZP_09610851.1| TIM-barrel protein, yjbN family [Shewanella baltica OS183]
gi|386323276|ref|YP_006019393.1| yjbN family TIM-barrel protein [Shewanella baltica BA175]
gi|333817421|gb|AEG10087.1| TIM-barrel protein, yjbN family [Shewanella baltica BA175]
gi|373887490|gb|EHQ16382.1| TIM-barrel protein, yjbN family [Shewanella baltica OS183]
Length = 339
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L
Sbjct: 104 NVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVIDIPVTVKTRIGIDEQDSYAFLTQ 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS+ T F IH+RKA L G+SP ENR IPPL YE Y L RD+P L +NGG+
Sbjct: 163 FIDVVSAKGCT-DFTIHARKAWLQGLSPKENREIPPLDYERVYQLKRDYPTLNIGINGGV 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L + VM+GR AYQNP Y L VD + G+ + ++R V+E Y +
Sbjct: 222 TTLEQAQLHLAQ-LDGVMMGREAYQNP-YILAQVDQVLCGSQKAVISREDVIEAMLPYIE 279
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + G + + + ++ F PG ++R
Sbjct: 280 AHLLSGG----RLNHITRHMIGLFQGLPGARAWRR 310
>gi|345865559|ref|ZP_08817739.1| tRNA-dihydrouridine synthase A [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345123297|gb|EGW53197.1| tRNA-dihydrouridine synthase A [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 274
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 107/175 (61%), Gaps = 4/175 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G G LM P+ V + + + ++PV+VK RIG+DD+DSY L
Sbjct: 96 NVGCPSDRVQ-NGMIGACLMAHPELVADCVRAMKEAVSIPVTVKTRIGIDDNDSYAALQG 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + HFIIH+RKA L G+SP ENR +PPL+YE L +DFP++ FT+NGGI
Sbjct: 155 FVAAQIG-AGCDHFIIHARKAWLQGLSPKENREVPPLRYEIVQQLKQDFPEMGFTINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKY 177
T+ + L +G VM+GR AY NPW L D IYG L+R QV+E++
Sbjct: 214 QTL-TLAEQLLQGLDGVMIGREAYHNPW-ILAEADRRIYGDNQPQLSRHQVLERF 266
>gi|419974839|ref|ZP_14490255.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|420028064|ref|ZP_14542048.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420032652|ref|ZP_14546465.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397344806|gb|EJJ37936.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397392208|gb|EJJ84012.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397397139|gb|EJJ88820.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
Length = 331
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 117/217 (53%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAPLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y + L RDFP LT +NGGI
Sbjct: 156 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQLKRDFPHLTMAINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 216 KSLDEARVQLEH-MDGVMVGREAYQNPG-ILASVDREIFGVAGADADPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 274 RELSKGTY------LGHITRHMLGLFQGIPGARQWRR 304
>gi|378976432|ref|YP_005224573.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|419980655|ref|ZP_14495938.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419985812|ref|ZP_14500950.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991568|ref|ZP_14506532.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997577|ref|ZP_14512372.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420003934|ref|ZP_14518576.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420009433|ref|ZP_14523916.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420015925|ref|ZP_14530222.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420021222|ref|ZP_14535404.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420038193|ref|ZP_14551842.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420044233|ref|ZP_14557715.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420049952|ref|ZP_14563256.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420055546|ref|ZP_14568712.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420060154|ref|ZP_14573156.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420067204|ref|ZP_14579999.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420071847|ref|ZP_14584490.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420078448|ref|ZP_14590905.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420082921|ref|ZP_14595211.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421913527|ref|ZP_16343208.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421914666|ref|ZP_16344307.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424935574|ref|ZP_18353946.1| tRNA-dihydrouridine synthase [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|428150792|ref|ZP_18998551.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428942393|ref|ZP_19015390.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae VA360]
gi|364515843|gb|AEW58971.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397345328|gb|EJJ38453.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397350360|gb|EJJ43449.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397362413|gb|EJJ55063.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397363280|gb|EJJ55921.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397367621|gb|EJJ60231.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397375785|gb|EJJ68064.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397381289|gb|EJJ73461.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397387039|gb|EJJ79089.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397404598|gb|EJJ96099.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397412235|gb|EJK03474.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397412369|gb|EJK03604.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397421653|gb|EJK12659.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397428551|gb|EJK19288.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397434293|gb|EJK24930.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397439883|gb|EJK30310.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397444790|gb|EJK35052.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397451690|gb|EJK41770.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|407809761|gb|EKF81012.1| tRNA-dihydrouridine synthase [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|410112612|emb|CCM85833.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410123082|emb|CCM86932.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|426298762|gb|EKV61144.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae VA360]
gi|427539260|emb|CCM94689.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 332
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 117/217 (53%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAPLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y + L RDFP LT +NGGI
Sbjct: 157 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQLKRDFPHLTMAINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 217 KSLDEARVQLEH-MDGVMVGREAYQNPG-ILASVDREIFGVAGADADPVAVVRAMYPYIE 274
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 275 RELSKGTYLGH------ITRHMLGLFQGIPGARQWRR 305
>gi|152972912|ref|YP_001338058.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150957761|gb|ABR79791.1| conserved protein, FMN-linked [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 313
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 117/217 (53%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 79 NVGCPSDRVQ-NGMFGACLMGNALLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y + L RDFP LT +NGGI
Sbjct: 138 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQLKRDFPHLTMAINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 198 KSLDEARVQLEH-MDGVMVGREAYQNPG-ILASVDREIFGVAGADADPVAVVRAMYPYIE 255
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 256 RELSKGTY------LGHITRHMLGLFQGIPGARQWRR 286
>gi|157372686|ref|YP_001480675.1| tRNA-dihydrouridine synthase A [Serratia proteamaculans 568]
gi|157324450|gb|ABV43547.1| TIM-barrel protein, yjbN family [Serratia proteamaculans 568]
Length = 336
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 120/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGQATLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR +PPL Y Y L RDFP+LT +NGG+
Sbjct: 157 FIATVAGRGECDMFTIHARKAWLSGLSPKENREVPPLDYPRVYQLKRDFPELTLAINGGV 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP L VD+ ++G + + ++E Y +
Sbjct: 217 KTLEEAKQHLQH-LDGVMMGREAYQNPG-ILARVDSELFGRQTEVMDSVAIIESLYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 275 REL----SNGTYLGHITRHILGLFQGVPGARQWRR 305
>gi|24375400|ref|NP_719443.1| tRNA2fMet-dihydrouridine21 synthase DusA [Shewanella oneidensis
MR-1]
gi|38604868|sp|Q8EAJ0.1|DUSA_SHEON RecName: Full=tRNA-dihydrouridine synthase A
gi|24350234|gb|AAN56887.1| tRNA2fMet-dihydrouridine21 synthase DusA [Shewanella oneidensis
MR-1]
Length = 335
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 131/244 (53%), Gaps = 15/244 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L
Sbjct: 99 NVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTH 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + FIIH+RKA L G+SP ENR IPPL Y+ Y L RD+P L ++NGGI
Sbjct: 158 FIDTVMA-KGCGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQLKRDYPALNISINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L+ VMVGR AYQNP Y L VD + G+ + ++R V+E Y +
Sbjct: 217 TSLEQAQTHLQH-LDGVMVGREAYQNP-YMLAQVDQVLCGSTKAVMSREAVIEAMLPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
A L G + + + ++ F PG ++R K A + K ++
Sbjct: 275 AHLQVGG----RLNHITRHMIGLFQGLPGARAWRRYLSENAHKNGAGIEVVKLAYQSVQT 330
Query: 236 TIVA 239
+VA
Sbjct: 331 DLVA 334
>gi|167836742|ref|ZP_02463625.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis MSMB43]
Length = 339
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 111/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD D Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPRLVADCVKAMRDAVSIPVTVKHRIGVDSVDDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGG+
Sbjct: 155 FVGTVAA-AGCEVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQLEIVINGGV 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L VD YGA + TR V K Y
Sbjct: 214 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGVDARFYGATAPAPTREAVEAKLVEYCA 271
Query: 183 AIL--GTY 188
L GTY
Sbjct: 272 TELARGTY 279
>gi|221134737|ref|ZP_03561040.1| tRNA-dihydrouridine synthase A [Glaciecola sp. HTCC2999]
Length = 305
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 125/218 (57%), Gaps = 8/218 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + +S + A ++PV+VK RIG+DD D Y L
Sbjct: 54 NVGCPSDRVQ-NGRFGACLMAEPQTVADCVSAMQAQVDIPVTVKSRIGIDDMDEYEDLSA 112
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V+ + FI+H+RKA L G+SP +NR +PPL YE Y L +FP L ++NGG+
Sbjct: 113 FIEQVAE-AGCDTFIVHARKAWLQGLSPKQNREVPPLMYERVYQLKEEFPHLHVSINGGV 171
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L VM+GR AY NP Y L VD IYG + L+R ++V++ Y
Sbjct: 172 KTLAEAQHHLSY-VDGVMIGREAYSNP-YILSEVDHLIYGDNQAVLSRIEIVKRMHSYIV 229
Query: 183 AILGT---YGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +G V +++ +L F +PG +++R
Sbjct: 230 EQLAAPNQFGQG-TKVWHIVRHMLGLFQGQPGGRVWRR 266
>gi|56752036|ref|YP_172737.1| tRNA-dihydrouridine synthase A [Synechococcus elongatus PCC 6301]
gi|81300875|ref|YP_401083.1| tRNA-dihydrouridine synthase A [Synechococcus elongatus PCC 7942]
gi|56686995|dbj|BAD80217.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81169756|gb|ABB58096.1| TIM-barrel protein, yjbN family [Synechococcus elongatus PCC 7942]
Length = 343
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 133/245 (54%), Gaps = 12/245 (4%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LM P+ V + + + + + +PV+VK RIG+DD DSY +L DF+
Sbjct: 105 GCPSDRVQ-KGQFGACLMARPEQVAQCVEAMRSASTLPVTVKHRIGIDDRDSYEELQDFV 163
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
++ + S F +H+RKA L G+ P +NRTIPPL+Y+ Y L +DFP L +NGGI
Sbjct: 164 -RIVAESGCDRFSVHARKAWLQGLDPKQNRTIPPLRYDVVYQLKQDFPQLVIEINGGILD 222
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+D+ L++ VM+GRA Y NP Y L D +YG +R QVV Y +
Sbjct: 223 LDQAQQHLQQ-VDAVMMGRAIYDNP-YLLAAADAQLYGDHLEPRSRLQVVLAMMPYIEQQ 280
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSV 244
L R H + + LL FH PG+ +KR Q CK E ++A + V
Sbjct: 281 LSQ--GVRLH--SITRHLLQLFHGCPGSRAWKRVLTE--QGCKPGAG--PEVLLAALEQV 332
Query: 245 LDSPI 249
+SPI
Sbjct: 333 SESPI 337
>gi|424904267|ref|ZP_18327777.1| tRNA dihydrouridine synthase A [Burkholderia thailandensis MSMB43]
gi|390930245|gb|EIP87647.1| tRNA dihydrouridine synthase A [Burkholderia thailandensis MSMB43]
Length = 323
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 111/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD D Y + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPRLVADCVKAMRDAVSIPVTVKHRIGVDSVDDYAFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGG+
Sbjct: 139 FVGTVAA-AGCEVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQLEIVINGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L VD YGA + TR V K Y
Sbjct: 198 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGVDARFYGATAPAPTREAVEAKLVEYCA 255
Query: 183 AIL--GTY 188
L GTY
Sbjct: 256 TELARGTY 263
>gi|262045546|ref|ZP_06018567.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330004874|ref|ZP_08305056.1| tRNA dihydrouridine synthase A [Klebsiella sp. MS 92-3]
gi|259037105|gb|EEW38355.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328536493|gb|EGF62835.1| tRNA dihydrouridine synthase A [Klebsiella sp. MS 92-3]
Length = 313
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 123/243 (50%), Gaps = 11/243 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 79 NVGCPSDRVQ-NGMFGACLMGNAPLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y + L RDFP LT +NGGI
Sbjct: 138 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQLKRDFPHLTMAINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 198 KSLDEARVQLEH-MDGVMVGREAYQNPG-ILASVDREIFGVAGADADPVAVVRAMYPYIE 255
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
L GTY + + + +L F PG ++R + LE + +
Sbjct: 256 RELSKGTY------LGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADIAVLEHALKLV 309
Query: 241 PDS 243
D
Sbjct: 310 ADK 312
>gi|419177772|ref|ZP_13721572.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7B]
gi|378027302|gb|EHV89932.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7B]
Length = 345
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LC+
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCN 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDIDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|417345397|ref|ZP_12125529.1| tRNA dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|357953004|gb|EHJ79712.1| tRNA dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
Length = 263
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 100/159 (62%), Gaps = 3/159 (1%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCDFI
Sbjct: 100 GCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFI 158
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI +
Sbjct: 159 DTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKS 218
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGA 163
++E LR VMVGR AYQNP L VD I+GA
Sbjct: 219 LEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGA 255
>gi|288937656|ref|YP_003441715.1| TIM-barrel protein, yjbN family [Klebsiella variicola At-22]
gi|288892365|gb|ADC60683.1| TIM-barrel protein, yjbN family [Klebsiella variicola At-22]
Length = 331
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 123/240 (51%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAPLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y + L RDFP LT +NGGI
Sbjct: 156 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQLKRDFPHLTMAINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 216 KSLDEARLQLEH-MDGVMVGREAYQNPG-ILASVDREIFGIAGADADPVAVVRAMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L +N ++ + + +L F PG ++R + LE + + D
Sbjct: 274 REL----SNGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADIAVLEHALKLVAD 329
>gi|312173953|emb|CBX82207.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ATCC BAA-2158]
Length = 349
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 128/244 (52%), Gaps = 18/244 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + + V + + + +VPV+VK RIG+DD DSY LCDF+
Sbjct: 113 GCPSDRVQ-NGRFGACLMGEAQLVADGIKAMRDVVSVPVTVKTRIGIDDQDSYEFLCDFM 171
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS FIIH+RKA L+G+SP ENR +PPL Y Y L RDFP LT ++NGG+ +
Sbjct: 172 RTVSEQGGCEMFIIHARKAWLSGLSPKENREVPPLDYPRVYQLKRDFPHLTLSINGGVKS 231
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+ E L+ VM+GR AYQNP L VD ++G S + VV Y +
Sbjct: 232 LAEAKIHLQH-LDGVMMGREAYQNPGL-LAQVDRELFGCTSPSIDPIAVVRSMYPYIERE 289
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
L GTY + V + +L F PG ++R KA A + S + E
Sbjct: 290 LAGGTY------LGHVTRHMLGLFQGIPGARQWRRYLSENAHKAGAGIDVVEKALSMVAE 343
Query: 236 TIVA 239
+ A
Sbjct: 344 KVPA 347
>gi|359453806|ref|ZP_09243109.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20495]
gi|358049122|dbj|GAA79358.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20495]
Length = 310
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 132/240 (55%), Gaps = 8/240 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E ++ + ++PV+VK RIG+D+ DSY LC
Sbjct: 79 NVGCPSDRVK-NGRFGACLMAEPQLVAECVAAMKNEVSIPVTVKTRIGIDEQDSYEFLCA 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
I + S FIIH+RKA LNG+SP ENR +PPL Y Y L +D+P L +LNGG+
Sbjct: 138 LI-EASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQLKKDYPQLDLSLNGGV 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VM+GR AY NP + L VD IYG ++ +R VV Y +
Sbjct: 197 KTIEQSLEHLQH-IDGVMIGREAYSNP-FMLNDVDEKIYGDTANTQSRHDVVRSMYSYIE 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ G N H + + +L F +PG F+R + + S +++ + +P+
Sbjct: 255 EEM-RLGANFWH---IARHMLGIFQGQPGARGFRRHLSESGHGKQADLSVMDKALSFVPE 310
>gi|386616879|ref|YP_006136545.1| tRNA-dihydrouridine synthase A DusA [Escherichia coli UMNK88]
gi|332346048|gb|AEE59382.1| tRNA-dihydrouridine synthase A DusA [Escherichia coli UMNK88]
Length = 339
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LC+
Sbjct: 105 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCN 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 164 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ VV Y +
Sbjct: 224 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDIDADPVAVVRAMYPYIE 281
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 282 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 312
>gi|300724718|ref|YP_003714043.1| tRNA -dihydrouridine synthase A [Xenorhabdus nematophila ATCC
19061]
gi|297631260|emb|CBJ91955.1| tRNA-dihydrouridine synthase A [Xenorhabdus nematophila ATCC 19061]
Length = 342
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM D V + + + ++PV+VK RIG+D+ DSY LCD
Sbjct: 108 NVGCPSDRVQ-NGRFGACLMGDAALVADCVKAMQDVVDIPVTVKTRIGIDEQDSYEFLCD 166
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V S +F+IH+RKA L+G+SP ENR IPPL Y Y L DFP LTF++NGGI
Sbjct: 167 FIETVVKNSDCDNFVIHARKAWLSGLSPKENREIPPLDYPRVYQLKNDFPQLTFSINGGI 226
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQNP L HVD ++ S + V+ Y +
Sbjct: 227 KSLEEAKQHLQY-VDGVMIGREAYQNP-SMLAHVDRELFNQTSPVTNTVEAVQALYPYIE 284
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 285 QELSKGTY------LGHITRHILGIFQGIPGARQWRR 315
>gi|292489772|ref|YP_003532662.1| tRNA-dihydrouridine synthase A [Erwinia amylovora CFBP1430]
gi|292898020|ref|YP_003537389.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ATCC 49946]
gi|428786747|ref|ZP_19004225.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ACW56400]
gi|291197868|emb|CBJ44967.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ATCC 49946]
gi|291555209|emb|CBA23447.1| tRNA-dihydrouridine synthase A [Erwinia amylovora CFBP1430]
gi|426275016|gb|EKV52756.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ACW56400]
Length = 349
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 128/244 (52%), Gaps = 18/244 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + + V + + + +VPV+VK RIG+DD DSY LCDF+
Sbjct: 113 GCPSDRVQ-NGRFGACLMGEAQLVADGIKAMRDVVSVPVTVKTRIGIDDQDSYEFLCDFM 171
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS FIIH+RKA L+G+SP ENR +PPL Y Y L RDFP LT ++NGG+ +
Sbjct: 172 RTVSEQGGCEMFIIHARKAWLSGLSPKENREVPPLDYPRVYQLKRDFPHLTLSINGGVKS 231
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+ E L+ VM+GR AYQNP L VD ++G S + VV Y +
Sbjct: 232 LAEAKIHLQH-LDGVMMGREAYQNPGL-LAQVDRELFGCTSPSIDPIAVVRSMYPYIERE 289
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
L GTY + V + +L F PG ++R KA A + S + E
Sbjct: 290 LAGGTY------LGHVTRHMLGLFQGIPGARQWRRYLSENAHKAGAGIDVVEKALSMVAE 343
Query: 236 TIVA 239
+ A
Sbjct: 344 KVPA 347
>gi|424818607|ref|ZP_18243758.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ECD227]
gi|325499627|gb|EGC97486.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ECD227]
Length = 331
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 120/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYSRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VMVGR AYQNP L VD I+ + + VV Y +
Sbjct: 216 KSLEEAKMHLQH-MDGVMVGREAYQNPG-ILAAVDREIFASTDTDADPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 274 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 304
>gi|167919102|ref|ZP_02506193.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei BCC215]
Length = 339
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 113/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 155 FVGTVAA-AGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR QV K Y
Sbjct: 214 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREQVEAKLVEYCA 271
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 272 AELARGTY 279
>gi|386286577|ref|ZP_10063765.1| tRNA-dihydrouridine synthase A [gamma proteobacterium BDW918]
gi|385280374|gb|EIF44298.1| tRNA-dihydrouridine synthase A [gamma proteobacterium BDW918]
Length = 327
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 125/215 (58%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G FG LM P V + + + ++P++VK RIG+D+ + Y L +
Sbjct: 94 NCGCPSDRVQ-NGFFGACLMARPTLVADCVKAMKDAGDLPITVKHRIGIDEQEGYGPLQE 152
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + T I+H+RKA L G+SP ENR IPPL Y+ Y L +DFPDL +NGGI
Sbjct: 153 FVGAIAD-AGTDAIIVHARKAWLQGLSPKENREIPPLNYDLVYQLKKDFPDLEIIINGGI 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ + L +M+GR+AYQ P Y L VD Y ++G TRR ++ + Y +
Sbjct: 212 QTLEDARSQLSY-VDGIMMGRSAYQTP-YLLAEVDEHFYQQAATGKTRRDIIHDFLPYIE 269
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + G H + + +L F+ + G LF+R
Sbjct: 270 AEL-SKGTRLNH---MTRHILGLFNGQAGGKLFRR 300
>gi|440232766|ref|YP_007346559.1| tRNA-U16,U17-dihydrouridine synthase [Serratia marcescens FGI94]
gi|440054471|gb|AGB84374.1| tRNA-U16,U17-dihydrouridine synthase [Serratia marcescens FGI94]
Length = 348
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 110 NVGCPSDRVQ-NGMFGACLMGQAALVADCIKAMRDAVSIPVTVKTRIGIDDQDSYAFLCD 168
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR +PPL Y Y L RDFP LT +NGG+
Sbjct: 169 FIDTVSGRGECEMFIIHARKAWLSGLSPKENREVPPLDYPRVYQLKRDFPALTIAINGGV 228
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E L+ VM+GR AYQNP L VD ++G+ ++ +VVE Y +
Sbjct: 229 KSLAEAQQHLQH-VDGVMMGREAYQNPG-ILAQVDRELFGSQAAVRNSVEVVEALYPYIE 286
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L N ++ + + +L F PG ++R
Sbjct: 287 RELA----NGTYLGHITRHILGLFQGIPGARQWRR 317
>gi|410085161|ref|ZP_11281881.1| tRNA dihydrouridine synthase A [Morganella morganii SC01]
gi|409768370|gb|EKN52432.1| tRNA dihydrouridine synthase A [Morganella morganii SC01]
Length = 348
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 118/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + ++ + T++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNASLVADCVAAMRDVTDIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ F+IH RKA L+G+SP ENR IPPL Y Y L +DFP LT LNGGI
Sbjct: 170 FVGTVADRGGCEMFVIHGRKAWLSGLSPKENREIPPLDYPRVYQLKKDFPHLTMALNGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VMVGR AYQNP L VD ++ A VE Y +
Sbjct: 230 KTLEEAKTHLQY-MDGVMVGREAYQNP-SILAQVDNVLFDAALPVTDTVAAVEAMYPYIE 287
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L T G H + + +L F PG ++R
Sbjct: 288 AELAT-GTYLGH---ITRHMLGIFQGIPGARQWRR 318
>gi|260221113|emb|CBA29353.1| tRNA-dihydrouridine synthase A [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 370
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 118/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM + V + + + +VPV+VK RIG+D +SY+ + D
Sbjct: 132 NCGCPSERVQ-RGAFGACLMNEAPLVADCVKSMVDAVDVPVTVKHRIGIDKEESYSFVRD 190
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI H+R A L G+SP ENR IPPL+YE Y L +DFP LT +NGGI
Sbjct: 191 FVGTVAD-AGCNVFIAHARNAWLKGLSPKENREIPPLRYELVYQLKKDFPHLTIAINGGI 249
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
EV L + VM+GR AY NPW+ L D+A YGAP +TR V + Y +
Sbjct: 250 TQTAEVAGHL-EHVDGVMLGREAYHNPWW-LAEWDSAFYGAPDRDITREMVEAQMVAYME 307
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+G H + + +L H PG +++
Sbjct: 308 REAAQHGT---HWYSIARHMLGLRHGLPGARRWRQ 339
>gi|429082481|ref|ZP_19145549.1| tRNA dihydrouridine synthase A [Cronobacter condimenti 1330]
gi|426548749|emb|CCJ71590.1| tRNA dihydrouridine synthase A [Cronobacter condimenti 1330]
Length = 313
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 129/243 (53%), Gaps = 11/243 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMGEAQLVADGIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 138 FVNTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 197
Query: 123 NTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+++V L AH VMVGR AYQNP L VD I+G + VV Y
Sbjct: 198 KTLEDVKTHL---AHMDGVMVGREAYQNPG-ILASVDREIFGLDTPDADPVAVVRAMYPY 253
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
+ L +N ++ V + +L F PG ++R + LE+ + +
Sbjct: 254 IEREL----SNGTYLGHVTRHMLGLFQGIPGARQWRRHLSENAHKPGADINVLEQALKLV 309
Query: 241 PDS 243
D
Sbjct: 310 ADK 312
>gi|425436423|ref|ZP_18816859.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9432]
gi|425451298|ref|ZP_18831120.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 7941]
gi|389678862|emb|CCH92315.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9432]
gi|389767500|emb|CCI07137.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 7941]
Length = 328
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 120/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V +S + ++PV+VK RIG+DD DSY + +
Sbjct: 89 NVGCPSSRVK-EGNFGACLMANPELVARGISAMNQAVSIPVTVKQRIGIDDQDSYENMAN 147
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ R F IH+RKA L G+SP ENRT+PPL+Y+ Y L FP L +NGGI
Sbjct: 148 FVRIVADAGCQR-FTIHARKAWLQGLSPKENRTVPPLRYDDVYRLKNQFPHLFIEINGGI 206
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ L+ VM+GRAAY NP Y VD YG ++ TR +V++K Y D
Sbjct: 207 INLEQARQHLQL-VDAVMIGRAAYDNP-YLFATVDRDFYGESATPPTREEVIKKMLPYID 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + K LL F +PG +KR
Sbjct: 265 ----EWVSKGYKLHQISKHLLQLFAGQPGTKAWKR 295
>gi|187932026|ref|YP_001892011.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712935|gb|ACD31232.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 327
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 134/234 (57%), Gaps = 11/234 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG+SLM +P+ V + + + N N+P+SVKCRIG D +DSY +L +
Sbjct: 92 NVGCPSERVK-KGNFGLSLMAEPELVADCVKAMKDNLNIPISVKCRIGYDHNDSYEELYN 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K + + IH+RK L+G+SP ENRTIP LKY+ Y++ +DFP+L +NGGI
Sbjct: 151 FVDKQVQ-AGIDYLCIHARKGWLSGLSPKENRTIPELKYDVVYSIKKDFPNLELGINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E+ L K VM+GR AY NP D Y P++ ++ ++ K Y
Sbjct: 210 TTIQEIQQHL-KYVDSVMMGREAYHNPM-LFKDFDNIFYNQPTTNISALEIAYKMAEY-- 265
Query: 183 AILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSFL 233
+ +N P+++ ++ K L+ F+ P +++R ++ A + V +FL
Sbjct: 266 --IKDQMDNDPYIKLNNITKHTLNLFNGLPNAKVYRRYLSENATKKEAKVDTFL 317
>gi|424863218|ref|ZP_18287131.1| tRNA-dihydrouridine synthase A [SAR86 cluster bacterium SAR86A]
gi|400757839|gb|EJP72050.1| tRNA-dihydrouridine synthase A [SAR86 cluster bacterium SAR86A]
Length = 323
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 136/244 (55%), Gaps = 17/244 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LML+P+ V ++ + +PV++KCR+GVD H+SY + +
Sbjct: 93 NCGCPSDRVQ-KGRFGACLMLEPEHVANCLAEMQNAVEIPVTIKCRLGVDHHESYEFIHN 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V S + FIIH+R +L G+SP +NR IPPLKY+Y Y L +DFP+L +NGGI
Sbjct: 152 FISTVKK-SGIKTFIIHARNGILKGLSPRQNRNIPPLKYDYVYKLKQDFPELDIVINGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ L K VM+GR+AY NP + L ++ I+ ++++++ KY Y +
Sbjct: 211 KNLEQSQMHL-KYVDGVMIGRSAYDNP-FMLKDIEKIIFNEEPLVKSKKEILNKYLDYVE 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
I + G+N P K L H F GL K +A K +++ + ++ +
Sbjct: 269 -IKASEGHNLP------KMLKHLF------GLSKGDKNAKNFRLKIIEAMKNNEVTSVRN 315
Query: 243 SVLD 246
+ D
Sbjct: 316 DLED 319
>gi|294677314|ref|YP_003577929.1| tRNA-dihydrouridine synthase A [Rhodobacter capsulatus SB 1003]
gi|294476134|gb|ADE85522.1| tRNA-dihydrouridine synthase A [Rhodobacter capsulatus SB 1003]
Length = 346
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 116/215 (53%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P V ++ + A V V+VKCRIGVDD L
Sbjct: 112 NVGCPSDRVQS-GAFGAVLMKTPDLVARCVAAMQAAAAVEVTVKCRIGVDDQSPEEVLPA 170
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS TR FI+H+RKA L G+SP ENR IPPL Y +A+ R+FP L +LNGG+
Sbjct: 171 FLKTVSEAGVTR-FILHARKAWLQGLSPKENREIPPLDYPLVHAMKREFPHLHLSLNGGV 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+V L G VMVGRAAYQ P L D A++G L+ +V E + Y
Sbjct: 230 ATLDQVETHLAAGMDGVMVGRAAYQEPMQVLAGADVALWGR-GEVLSAVEVAEAMKPYIA 288
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + + + +L FH PG ++R
Sbjct: 289 DHLAAGGR----LHQITRHMLGLFHGRPGARGWRR 319
>gi|388257749|ref|ZP_10134928.1| tRNA-dihydrouridine synthase A [Cellvibrio sp. BR]
gi|387938916|gb|EIK45468.1| tRNA-dihydrouridine synthase A [Cellvibrio sp. BR]
Length = 346
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 126/217 (58%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G G LM +P+ V + ++ + +PV+VK RIG+DD + Y L
Sbjct: 108 NCGCPSDRVQ-NGMIGACLMAEPELVADCIASMQHAVKIPVTVKHRIGIDDMEDYAGLVK 166
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +++ + FI+H+RKA L G+SP ENR +PPL+Y+ Y L +DFP L +NGGI
Sbjct: 167 FVSTIAA-TGCSTFIVHARKAWLKGLSPKENREVPPLQYDKVYQLKQDFPQLNIIINGGI 225
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+++ L AH VM+GR AY NP Y L VD IYG+ + ++R +V+E+++ Y
Sbjct: 226 TTLEQTKTLL---AHVDGVMIGREAYSNP-YLLAEVDQQIYGSSRTIISRDEVMEQFKEY 281
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G H + + +L + PG F+R
Sbjct: 282 CIEQLAK-GARLNH---LTRHILGLYQGLPGARQFRR 314
>gi|90414453|ref|ZP_01222429.1| putative NifR3/Smm1 family protein [Photobacterium profundum 3TCK]
gi|90324458|gb|EAS41017.1| putative NifR3/Smm1 family protein [Photobacterium profundum 3TCK]
Length = 346
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 117/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V +S + ++PV+VK RIG+D+ DSY L D
Sbjct: 110 NVGCPSDRVQ-NGRFGACLMGEADLVALCVSSMREVVDIPVTVKTRIGIDEQDSYQFLVD 168
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ S +F +H+RKA L G+SP ENR IPPL Y Y L RDFP+L +NGGI
Sbjct: 169 FIGTVNEKSGCDNFTVHARKAWLKGLSPKENREIPPLDYPRVYQLKRDFPNLIMAINGGI 228
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T DE+ L VMVGR AYQNP Y + VD ++G + RR+ E Y +
Sbjct: 229 KTFDEMEEHLNH-MDGVMVGREAYQNP-YLMAEVDQRLFGCSKPIIKRREAAEAMFPYIE 286
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L N + + + +L F PG ++R
Sbjct: 287 RQLA----NGSKLGHITRHMLGLFQGIPGGRQWRR 317
>gi|389839414|ref|YP_006341498.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii ES15]
gi|387849890|gb|AFJ97987.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii ES15]
Length = 331
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 119/217 (54%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGRFGACLMGEAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FVGTVAEQGGCDIFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY-- 180
T+D+V L VMVGR AYQNP L VD I+G VV Y
Sbjct: 216 KTLDDVKTHLEH-MDGVMVGREAYQNPG-ILASVDREIFGFNVPDADPVAVVRAMYPYIE 273
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
G+ GTY + V + +L F PG ++R
Sbjct: 274 GELAKGTY------LGHVTRHMLGLFQGIPGARQWRR 304
>gi|126658190|ref|ZP_01729341.1| tRNA-dihydrouridine synthase A [Cyanothece sp. CCY0110]
gi|126620561|gb|EAZ91279.1| tRNA-dihydrouridine synthase A [Cyanothece sp. CCY0110]
Length = 341
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 121/216 (56%), Gaps = 10/216 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P V + + + +PV+VK RIG+DD DSY +
Sbjct: 96 NVGCPSDRVQS-GHFGACLMANPDLVAQCVEKMQKAVTIPVTVKHRIGIDDQDSYENMAQ 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KV S + + F +H+RKA L G+SP ENR IPPL+YE Y L ++FP L +NGGI
Sbjct: 155 FV-KVVSDAGCQRFTVHARKAWLKGLSPKENRNIPPLRYEAVYRLKQEFPHLFIEINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++V L + VM+GRAAY NP Y VD IY LTR +++EK Y D
Sbjct: 214 TNLEQVRNHL-ELVDAVMIGRAAYDNP-YLFATVDRDIYQDKIIQLTRHEIIEKMLPYID 271
Query: 183 AILGTYGNNRPH-VRDVMKPLLHFFHSEPGNGLFKR 217
+ +R H + + + LL F PG +KR
Sbjct: 272 DWV-----SRGHKLHKISRHLLAIFSGIPGTKAWKR 302
>gi|118497197|ref|YP_898247.1| tRNA-dihydrouridine synthase A [Francisella novicida U112]
gi|194323496|ref|ZP_03057273.1| RNA dihydrouridine synthase A [Francisella novicida FTE]
gi|118423103|gb|ABK89493.1| tRNA-dihydrouridine synthase [Francisella novicida U112]
gi|194322351|gb|EDX19832.1| RNA dihydrouridine synthase A [Francisella tularensis subsp.
novicida FTE]
Length = 327
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 133/234 (56%), Gaps = 11/234 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG+SLM +P+ V + + + N N+P+SVKCRIG D +DSY +L +
Sbjct: 92 NVGCPSERVK-KGNFGLSLMAEPELVADCVKAMKDNLNIPISVKCRIGYDHNDSYEELYN 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K + + IH+RK L+G+SP ENRTIP LKY+ Y++ +DFP+L +NGGI
Sbjct: 151 FVDKQVQ-AGVDYLCIHARKGWLSGLSPKENRTIPELKYDVVYSIKKDFPNLELGINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L K VM+GR AY NP D Y P++ ++ ++ K Y
Sbjct: 210 TTIQETQQHL-KYVDSVMIGREAYHNPM-LFKDFDNIFYNQPTTNISALEIAYKMAEY-- 265
Query: 183 AILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSFL 233
+ +N P+++ ++ K L+ F+ P +++R ++ A + V +FL
Sbjct: 266 --IKDQMDNDPYIKLNNITKHTLNLFNGLPNAKVYRRYLSENATKKEANVDTFL 317
>gi|217971989|ref|YP_002356740.1| tRNA-dihydrouridine synthase A [Shewanella baltica OS223]
gi|217497124|gb|ACK45317.1| TIM-barrel protein, yjbN family [Shewanella baltica OS223]
Length = 339
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L
Sbjct: 104 NVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYAFLTQ 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS+ T F IH+RKA L G+SP ENR IPPL YE Y L RD+P L +NGG+
Sbjct: 163 FIDVVSAKGCT-DFTIHARKAWLQGLSPKENREIPPLDYERVYQLKRDYPALNIGINGGV 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L + VM+GR AYQNP Y L VD + G+ + ++R V+E Y +
Sbjct: 222 TTLEQAQLHLAQ-LDGVMMGREAYQNP-YILAQVDQVLCGSQKAVISREDVIEVMLPYIE 279
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + G + + + ++ F PG ++R
Sbjct: 280 AHLLSGG----RLNHITRHMIGLFQGLPGARAWRR 310
>gi|168748106|ref|ZP_02773128.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4113]
gi|168755216|ref|ZP_02780223.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4401]
gi|168766306|ref|ZP_02791313.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4486]
gi|168774404|ref|ZP_02799411.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4196]
gi|168780459|ref|ZP_02805466.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4076]
gi|195935832|ref|ZP_03081214.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4024]
gi|208807897|ref|ZP_03250234.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4206]
gi|208814168|ref|ZP_03255497.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4045]
gi|208821033|ref|ZP_03261353.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4042]
gi|209398005|ref|YP_002273589.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4115]
gi|419089390|ref|ZP_13634734.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4B]
gi|424118684|ref|ZP_17852494.1| tRNA-dihydrouridine synthase [Escherichia coli PA3]
gi|424168129|ref|ZP_17887061.1| tRNA-dihydrouridine synthase [Escherichia coli PA24]
gi|424259338|ref|ZP_17892600.1| tRNA-dihydrouridine synthase [Escherichia coli PA25]
gi|424503340|ref|ZP_17950199.1| tRNA-dihydrouridine synthase [Escherichia coli EC4203]
gi|424509611|ref|ZP_17955952.1| tRNA-dihydrouridine synthase [Escherichia coli EC4196]
gi|424541244|ref|ZP_17984164.1| tRNA-dihydrouridine synthase [Escherichia coli EC4013]
gi|424547395|ref|ZP_17989696.1| tRNA-dihydrouridine synthase [Escherichia coli EC4402]
gi|424553593|ref|ZP_17995394.1| tRNA-dihydrouridine synthase [Escherichia coli EC4439]
gi|424572241|ref|ZP_18012750.1| tRNA-dihydrouridine synthase [Escherichia coli EC4448]
gi|424578400|ref|ZP_18018408.1| tRNA-dihydrouridine synthase [Escherichia coli EC1845]
gi|425141260|ref|ZP_18541617.1| tRNA-dihydrouridine synthase [Escherichia coli 10.0833]
gi|425153050|ref|ZP_18552640.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.0221]
gi|425332693|ref|ZP_18720480.1| tRNA-dihydrouridine synthase [Escherichia coli EC1846]
gi|425338873|ref|ZP_18726186.1| tRNA-dihydrouridine synthase [Escherichia coli EC1847]
gi|425345164|ref|ZP_18732028.1| tRNA-dihydrouridine synthase [Escherichia coli EC1848]
gi|425351002|ref|ZP_18737437.1| tRNA-dihydrouridine synthase [Escherichia coli EC1849]
gi|425357271|ref|ZP_18743309.1| tRNA-dihydrouridine synthase [Escherichia coli EC1850]
gi|425363226|ref|ZP_18748849.1| tRNA-dihydrouridine synthase [Escherichia coli EC1856]
gi|425369490|ref|ZP_18754541.1| tRNA-dihydrouridine synthase [Escherichia coli EC1862]
gi|429075959|ref|ZP_19139194.1| tRNA-dihydrouridine synthase [Escherichia coli 99.0678]
gi|444949988|ref|ZP_21268264.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0839]
gi|444955588|ref|ZP_21273636.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0848]
gi|444993687|ref|ZP_21310312.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA19]
gi|445010034|ref|ZP_21326245.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA47]
gi|445042795|ref|ZP_21358149.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA35]
gi|452968715|ref|ZP_21966942.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4009]
gi|187769933|gb|EDU33777.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4196]
gi|188017450|gb|EDU55572.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4113]
gi|189001854|gb|EDU70840.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4076]
gi|189357455|gb|EDU75874.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4401]
gi|189364132|gb|EDU82551.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4486]
gi|208727698|gb|EDZ77299.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4206]
gi|208735445|gb|EDZ84132.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4045]
gi|208741156|gb|EDZ88838.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4042]
gi|209159405|gb|ACI36838.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4115]
gi|377925314|gb|EHU89254.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4B]
gi|390673506|gb|EIN49747.1| tRNA-dihydrouridine synthase [Escherichia coli PA3]
gi|390716238|gb|EIN89050.1| tRNA-dihydrouridine synthase [Escherichia coli PA24]
gi|390717483|gb|EIN90268.1| tRNA-dihydrouridine synthase [Escherichia coli PA25]
gi|390821894|gb|EIO88056.1| tRNA-dihydrouridine synthase [Escherichia coli EC4203]
gi|390827023|gb|EIO92814.1| tRNA-dihydrouridine synthase [Escherichia coli EC4196]
gi|390862031|gb|EIP24244.1| tRNA-dihydrouridine synthase [Escherichia coli EC4013]
gi|390865927|gb|EIP27919.1| tRNA-dihydrouridine synthase [Escherichia coli EC4402]
gi|390874494|gb|EIP35613.1| tRNA-dihydrouridine synthase [Escherichia coli EC4439]
gi|390890823|gb|EIP50476.1| tRNA-dihydrouridine synthase [Escherichia coli EC4448]
gi|390914088|gb|EIP72634.1| tRNA-dihydrouridine synthase [Escherichia coli EC1845]
gi|408242514|gb|EKI65094.1| tRNA-dihydrouridine synthase [Escherichia coli EC1846]
gi|408251313|gb|EKI73059.1| tRNA-dihydrouridine synthase [Escherichia coli EC1847]
gi|408255561|gb|EKI76996.1| tRNA-dihydrouridine synthase [Escherichia coli EC1848]
gi|408262137|gb|EKI83087.1| tRNA-dihydrouridine synthase [Escherichia coli EC1849]
gi|408270671|gb|EKI90852.1| tRNA-dihydrouridine synthase [Escherichia coli EC1850]
gi|408273472|gb|EKI93526.1| tRNA-dihydrouridine synthase [Escherichia coli EC1856]
gi|408281759|gb|EKJ01143.1| tRNA-dihydrouridine synthase [Escherichia coli EC1862]
gi|408575226|gb|EKK50910.1| tRNA-dihydrouridine synthase [Escherichia coli 10.0833]
gi|408592775|gb|EKK67131.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.0221]
gi|427324246|gb|EKW85725.1| tRNA-dihydrouridine synthase [Escherichia coli 99.0678]
gi|444553974|gb|ELV31563.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0839]
gi|444558675|gb|ELV35946.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0848]
gi|444602347|gb|ELV77089.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA19]
gi|444618090|gb|ELV92189.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA47]
gi|444650477|gb|ELW23305.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA35]
Length = 345
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDF LT ++NGGI
Sbjct: 170 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFLHLTMSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 230 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 318
>gi|295676394|ref|YP_003604918.1| yjbN family TIM-barrel protein [Burkholderia sp. CCGE1002]
gi|295436237|gb|ADG15407.1| TIM-barrel protein, yjbN family [Burkholderia sp. CCGE1002]
Length = 333
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 112/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDVVSVPVTVKHRIGVDTVEEYGFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 155 FVGTIAE-AGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYQLKRDFPQLEIIINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY-- 180
T+DEV+ L+ VM+GR AY NP Y L VD YG+ S TR QV K Y
Sbjct: 214 KTLDEVDTHLQH-VDGVMLGREAYHNP-YVLADVDARFYGSTQSPPTRDQVEAKLIEYCA 271
Query: 181 GDAILGTY 188
+ GTY
Sbjct: 272 TEMARGTY 279
>gi|254796068|ref|YP_003080905.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14359]
gi|254595468|gb|ACT74829.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14359]
Length = 330
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDF LT ++NGGI
Sbjct: 155 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFLHLTMSINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 215 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 272
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 273 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 303
>gi|152996532|ref|YP_001341367.1| tRNA-dihydrouridine synthase A [Marinomonas sp. MWYL1]
gi|150837456|gb|ABR71432.1| TIM-barrel protein, yjbN family [Marinomonas sp. MWYL1]
Length = 341
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 125/228 (54%), Gaps = 19/228 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P V EAM + N ++PV++K RIG+DD + Y+ + D
Sbjct: 105 NVGCPSDRVQ-NSLIGACLMAHPDKVKEAMRAMQDNCSIPVTIKHRIGLDDQEDYSVVRD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ T FI+H+R A+L G+SP ENR +PPLKY Y + L +DFPDL +NGGI
Sbjct: 164 FVGDVATTGVTT-FIVHARNAILEGLSPKENREVPPLKYHYVHQLKKDFPDLEIIINGGI 222
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+DE L AH VMVGR AY NPW L VD ++G R + +E + Y
Sbjct: 223 KTLDECKEQL---AHVDGVMVGREAYHNPW-ILSQVDEVLFGGQPLVNDRYEALEAFVPY 278
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADA 221
+ L G H + + +L F E G F+R KADA
Sbjct: 279 VERKL-QEGERLMH---LTRHILGIFQGEAGGKQFRRYLSENGHKADA 322
>gi|359440020|ref|ZP_09229946.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20429]
gi|358038094|dbj|GAA66195.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20429]
Length = 310
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E ++ + + ++PV+VK RIG+D+ DSY LC
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPQLVAECVAAMKSEVSIPVTVKTRIGIDEQDSYEFLCA 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
I + S FIIH+RKA LNG+SP ENR +PPL Y Y L +D+P L +LNGG+
Sbjct: 138 LI-EASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQLKKDYPQLDLSLNGGV 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VM+GR AY NP + L VD IYG ++ +R VV Y +
Sbjct: 197 KTIEQSLEHLQH-IDGVMIGREAYSNP-FMLNDVDEKIYGDAANTQSRHDVVRSMYSYIE 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ G N H + + +L F +PG F+R
Sbjct: 255 EEM-RLGANFWH---IARHMLGIFQGQPGARGFRR 285
>gi|445495230|ref|ZP_21462274.1| tRNA-dihydrouridine synthase A [Janthinobacterium sp. HH01]
gi|444791391|gb|ELX12938.1| tRNA-dihydrouridine synthase A [Janthinobacterium sp. HH01]
Length = 341
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 121/215 (56%), Gaps = 4/215 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++ V+VK R+G+D +SY+ + D
Sbjct: 104 NCGCPSERVQ-KGAFGACLMAEPQLVADCVKAMRDAVSIDVTVKHRVGIDQTESYDFVRD 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ T FI+H+R A+L G+SP ENR IPPLKYE+ Y L RDFPD +NGGI
Sbjct: 163 FVGTVAEAGCTT-FIVHARNAILKGLSPKENREIPPLKYEFAYQLKRDFPDFEIIINGGI 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T E++ L K VM+GR AY NP+ G D YG + +R +V+E Y
Sbjct: 222 KTEAEIDEHL-KHLDGVMLGREAYHNPFVMAG-FDQRYYGDSRAPKSREEVIEAMIPYIQ 279
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L +G + + + + +L PG F++
Sbjct: 280 AQLALHGAHGLKLNTITRHMLGLMTGLPGARAFRQ 314
>gi|429088299|ref|ZP_19151031.1| tRNA dihydrouridine synthase A [Cronobacter universalis NCTC 9529]
gi|426508102|emb|CCK16143.1| tRNA dihydrouridine synthase A [Cronobacter universalis NCTC 9529]
Length = 331
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 101/160 (63%), Gaps = 3/160 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPKLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 162
T+D+V A L VMVGR AYQNP L VD I+G
Sbjct: 216 KTLDDVKAHLEH-MDGVMVGREAYQNPGL-LASVDREIFG 253
>gi|429213695|ref|ZP_19204859.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. M1]
gi|428155290|gb|EKX01839.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. M1]
Length = 312
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 106/176 (60%), Gaps = 4/176 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V H G LM P V E + + ++PV+VK RIG++ DSY +LCDF+
Sbjct: 82 GCPSDRVQ-HNMIGACLMAHPALVAECVLAMREAVSIPVTVKHRIGINGRDSYAELCDFV 140
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+V + R F +H+R A+L G+SP ENR +PPL+YE L RDFPDL LNGGI T
Sbjct: 141 GQVRE-AGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQLKRDFPDLEIVLNGGIKT 199
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
+ E LR VM+GR AY NP Y L VD A+YGA + ++R + + + + Y
Sbjct: 200 LAECQEHLRT-FDGVMLGREAYHNP-YLLAQVDAALYGADAPAISRAEALARMRPY 253
>gi|417792931|ref|ZP_12440235.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii E899]
gi|429117008|ref|ZP_19177926.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 701]
gi|449306619|ref|YP_007438975.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii SP291]
gi|333952990|gb|EGL70988.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii E899]
gi|426320137|emb|CCK04039.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 701]
gi|449096652|gb|AGE84686.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii SP291]
Length = 331
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 119/217 (54%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGRFGACLMGEAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FVGTVAERGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+V L VMVGR AYQNP L VD I+G VV Y +
Sbjct: 216 KTLDDVKTHLEH-MDGVMVGREAYQNPG-ILASVDREIFGLDVPDADPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + V + +L F PG ++R
Sbjct: 274 RELAKGTYLGH------VTRHMLGLFQGIPGARQWRR 304
>gi|428164490|gb|EKX33514.1| hypothetical protein GUITHDRAFT_81327 [Guillardia theta CCMP2712]
Length = 317
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 119/218 (54%), Gaps = 11/218 (5%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V+ G FG LM +P+ V + ++ + + VPV+VK RIG+D DSY+ LC F+
Sbjct: 103 GCPSERVST-GSFGACLMAEPELVRDCVAAMRESVKVPVTVKHRIGIDHLDSYDLLCKFV 161
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V + FI+H+RKA+L G+SP ENR IPPL+Y + L +DFP L +NGGI
Sbjct: 162 STVEE-GGCKTFIVHARKAILKGLSPKENREIPPLQYHVVHQLKQDFPQLEIIINGGITD 220
Query: 125 VDEVNAALRK-----GAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQI 179
+ + A L + G VM+GR+AY P+ L D IY G+T Q++E+
Sbjct: 221 LSQARAHLEQAGRAGGMDGVMIGRSAYHEPYKILSRADMEIYNDEGGGVTYFQIIEEMLP 280
Query: 180 YGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ D L + + + + FH PG F+R
Sbjct: 281 FIDEQL----KAGVSLNSITRHMQGLFHGCPGGRAFRR 314
>gi|429118938|ref|ZP_19179683.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 680]
gi|426326596|emb|CCK10420.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 680]
Length = 331
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 119/217 (54%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGRFGACLMGEAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPKLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+V L VMVGR AYQNP L VD I+G VV Y +
Sbjct: 216 KTLDDVKTHLEH-MDGVMVGREAYQNPG-ILASVDREIFGLDVPDTDPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + V + +L F PG ++R
Sbjct: 274 RELAKGTYLGH------VTRHMLGLFQGIPGARQWRR 304
>gi|227326002|ref|ZP_03830026.1| tRNA-dihydrouridine synthase A [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 340
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 120/213 (56%), Gaps = 7/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + V + + + +T++P++VK RIG+DD DSY LCDFI
Sbjct: 109 GCPSDRVQ-NGRFGACLMGEAALVADCIKAMKDSTSIPITVKTRIGIDDQDSYEFLCDFI 167
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ FI+H+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+ T
Sbjct: 168 QTVAERGECDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPALTLAINGGVKT 227
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E L+ VM+GR AYQNP L VD ++G ++ VV Y +
Sbjct: 228 LEEAKTHLQH-LDGVMMGREAYQNPG-ILAQVDRELFGIDAATPDLAGVVRAMYPYIERE 285
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + G + H + + +L F PG ++R
Sbjct: 286 LSS-GASLGH---ITRHMLGMFQGIPGARQWRR 314
>gi|398800266|ref|ZP_10559539.1| tRNA dihydrouridine synthase A [Pantoea sp. GM01]
gi|398095794|gb|EJL86127.1| tRNA dihydrouridine synthase A [Pantoea sp. GM01]
Length = 332
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 129/247 (52%), Gaps = 11/247 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM D V + + + ++PV+VK RIG+D+ DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMADAALVADCIKAMRDVVSIPVTVKTRIGIDEQDSYEFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 152 FIGTVAQQGGCETFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPALTMAINGGI 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP L VD ++G + + VV Y +
Sbjct: 212 KTLEEAKLHLQH-MDGVMMGREAYQNPG-ILAQVDRELFGRDTPTVDPVAVVRSMYPYIE 269
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR----KADAAFQTCKTVKSFLEETIV 238
A L + ++ V + +L F PG ++R A + V++ L +
Sbjct: 270 AEL----SKGMYLGHVTRHMLGLFQGIPGARQWRRYLSENAHKPGADVRVVEAALALVVD 325
Query: 239 AIPDSVL 245
IP L
Sbjct: 326 KIPQEAL 332
>gi|323495575|ref|ZP_08100649.1| tRNA-dihydrouridine synthase A [Vibrio sinaloensis DSM 21326]
gi|323319456|gb|EGA72393.1| tRNA-dihydrouridine synthase A [Vibrio sinaloensis DSM 21326]
Length = 333
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 121/215 (56%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 97 NVGCPSDRVQ-NGRFGACLMAEPELVAQCVASMREVVDIPVTVKTRIGIDDQDSYEFLTD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ F IH+RKA L+G+SP ENR IPPL Y Y L +DF L +NGG+
Sbjct: 156 FVSIVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLNIAVNGGV 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L VMVGR AYQNP Y L VD I+G R QVVE+ Y +
Sbjct: 216 KTLEDSLVHLEH-LDGVMVGREAYQNP-YLLAQVDQQIFGLDKPVKKRSQVVEEMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + ++ + + ++ F + PG ++R
Sbjct: 274 AQL----SKGAYLGHITRHMIGLFQAMPGARQWRR 304
>gi|386312475|ref|YP_006008640.1| yjbN family TIM-barrel protein [Shewanella putrefaciens 200]
gi|319425100|gb|ADV53174.1| TIM-barrel protein, yjbN family [Shewanella putrefaciens 200]
Length = 343
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L
Sbjct: 108 NVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTY 166
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V++ T F IH+RKA L G+SP ENR IPPL YE Y L RD+P L ++NGG+
Sbjct: 167 FIDIVNAKGCT-DFTIHARKAWLQGLSPKENREIPPLDYERVYQLKRDYPVLNISINGGV 225
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L + VM+GR AYQNP Y L VD + G+ + ++R V+E Y +
Sbjct: 226 TTLEQAQGHLSQ-LDGVMMGREAYQNP-YILARVDQVLCGSQRAVISREDVIEAMLPYIE 283
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L G + + + ++ F PG ++R
Sbjct: 284 AHLQAGG----RLNHITRHMIGLFQGLPGARAWRR 314
>gi|119469148|ref|ZP_01612132.1| tRNA-dihydrouridine synthase A [Alteromonadales bacterium TW-7]
gi|119447400|gb|EAW28668.1| tRNA-dihydrouridine synthase A [Alteromonadales bacterium TW-7]
Length = 329
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 131/240 (54%), Gaps = 8/240 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+D+ DSY LC
Sbjct: 98 NVGCPSDRVQ-NGRFGACLMAEPELVAQCVAAMKNEVSIPVTVKTRIGIDEQDSYEFLCA 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
I + S FIIH+RKA LNG+SP ENR +PPL Y Y L +D+P L ++NGG+
Sbjct: 157 LI-EASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQLKKDYPQLDLSINGGV 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
TV++ L+ VMVGR AY NP + L VD IYG ++ TR VV Y +
Sbjct: 216 KTVEQSLEHLQY-IDGVMVGREAYSNP-FMLNEVDEKIYGDTANTQTRHDVVRSMYDYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ G N H V + +L F +PG F+R + S +++ + +P+
Sbjct: 274 EEM-RLGANFWH---VARHMLGIFQGQPGARGFRRHLSENGHGKQADLSVMDKALSFVPE 329
>gi|402819628|ref|ZP_10869196.1| TIM-barrel protein, yjbN family [alpha proteobacterium IMCC14465]
gi|402511775|gb|EJW22036.1| TIM-barrel protein, yjbN family [alpha proteobacterium IMCC14465]
Length = 311
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V E ++ + AN N+PV+VK RIGVDD D L
Sbjct: 55 NVGCPSDRVQA-GRFGACLMQEPELVAECVAAMRANVNIPVTVKSRIGVDDQDPEEALFH 113
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+ ++S+ + FI+H+RKA L+G+SP +NR IPPL Y+ YAL + DLT LNGGI
Sbjct: 114 LV-ELSAQAGCDVFIVHARKAWLDGLSPKQNRDIPPLNYDLVYALKKSRQDLTIILNGGI 172
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+T+ E A L+ VM+GRAAY+ P Y L VD I+ + R VVE Y +
Sbjct: 173 DTLSEAEAHLQH-VDGVMLGRAAYKTP-YILADVDRLIFNDDTEPPCREAVVEALIPYAE 230
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
++ P + + + L+ F S+PG L++R
Sbjct: 231 KLV---SEGVP-LHALTRHLMGLFQSQPGGRLWRR 261
>gi|270263331|ref|ZP_06191601.1| tRNA-dihydrouridine synthase A [Serratia odorifera 4Rx13]
gi|386823311|ref|ZP_10110462.1| tRNA-dihydrouridine synthase A [Serratia plymuthica PRI-2C]
gi|270043019|gb|EFA16113.1| tRNA-dihydrouridine synthase A [Serratia odorifera 4Rx13]
gi|386379771|gb|EIJ20557.1| tRNA-dihydrouridine synthase A [Serratia plymuthica PRI-2C]
Length = 336
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 118/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGQATLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR +PPL Y Y L RDFP LT +NGG+
Sbjct: 157 FIATVAGRGECDMFTIHARKAWLSGLSPKENREVPPLDYPRVYQLKRDFPQLTLAINGGV 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L VM+GR AYQNP L VD+ ++G + + ++E Y +
Sbjct: 217 KTLEEAKQHLEH-LDGVMMGREAYQNPG-ILARVDSELFGRQTEVMDSVAIIESLYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 275 REL----SNGTYLGHITRHILGLFQGVPGARQWRR 305
>gi|227112414|ref|ZP_03826070.1| tRNA-dihydrouridine synthase A [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 340
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 123/220 (55%), Gaps = 21/220 (9%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + V + + + +T++P++VK RIG+DD DSY LCDFI
Sbjct: 109 GCPSDRVQ-NGRFGACLMGEAALVADCIKAMKDSTSIPITVKTRIGIDDQDSYEFLCDFI 167
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ FI+H+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+ T
Sbjct: 168 QTVAERGECETFIVHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPALTIAINGGVKT 227
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPS-----SGLTRRQ--VVEKY 177
++E L+ VM+GR AYQNP L VD ++G + +G+ R +E+
Sbjct: 228 LEEAKTHLQH-LDGVMMGREAYQNPG-ILAQVDRELFGIDAATPDLAGVVRAMYPYIER- 284
Query: 178 QIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
++ G A LG + + +L F PG ++R
Sbjct: 285 ELSGGASLG----------HITRHMLGMFQGIPGARQWRR 314
>gi|425471121|ref|ZP_18849981.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9701]
gi|389883063|emb|CCI36544.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9701]
Length = 331
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V +S + ++PV+VK RIG+DD DSY + +
Sbjct: 89 NVGCPSSRVK-EGNFGACLMANPELVARGISAMNQAVSIPVTVKQRIGIDDQDSYENMAN 147
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ R F IH+RKA L G+SP ENRT+PPL+Y+ Y L FP L +NGGI
Sbjct: 148 FVRIVADAGCQR-FTIHARKAWLQGLSPKENRTVPPLRYDDVYRLKNQFPHLFIEINGGI 206
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ L+ VM+GRAAY NP Y VD YG + TR +V++K Y D
Sbjct: 207 INLEQARQHLQL-VDAVMIGRAAYDNP-YLFATVDRDFYGESVTPPTREEVIKKMLPYID 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + K LL F +PG +KR
Sbjct: 265 ----EWVSKGYKLHQISKHLLQLFAGQPGTKAWKR 295
>gi|218551359|ref|YP_002385151.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ATCC 35469]
gi|218358901|emb|CAQ91560.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ATCC 35469]
Length = 331
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 120/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VMVGR AYQNP L VD I+ + + VV Y +
Sbjct: 216 KSLEEAKMHLQH-MDGVMVGREAYQNPG-ILAAVDREIFASTDTDADPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 274 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 304
>gi|167586199|ref|ZP_02378587.1| tRNA-dihydrouridine synthase A [Burkholderia ubonensis Bu]
Length = 339
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 112/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSVPVTVKHRIGVDAVEEYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 155 FVGTVAE-AGCEVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPSLEIVINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L + VM+GR AY NP Y L VD YGA + TR + E+ Y
Sbjct: 214 KTLDEVAQHL-EHVDGVMLGREAYHNP-YVLAGVDARFYGANDAAPTREEAEERLIEYCA 271
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 272 AELKRGTY 279
>gi|113971575|ref|YP_735368.1| tRNA-dihydrouridine synthase A [Shewanella sp. MR-4]
gi|113886259|gb|ABI40311.1| TIM-barrel protein, yjbN family [Shewanella sp. MR-4]
Length = 335
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 130/244 (53%), Gaps = 15/244 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L
Sbjct: 99 NVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTY 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + FIIH+RKA L G+SP ENR IPPL Y+ Y L RD+P L ++NGGI
Sbjct: 158 FIDTVMA-KGCGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQLKRDYPMLNISINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L+ VMVGR AYQNP Y L VD + G + ++R V+E Y +
Sbjct: 217 TSLEQAKTHLQY-LDGVMVGREAYQNP-YILAQVDQLLCGCEKAVISREAVIEAMLPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
A L G + + + ++ F PG ++R K A + K ++
Sbjct: 275 AHLQAGG----RLNHITRHMIGLFQGLPGARAWRRYLSENAHKNGAGIEVVKQAYQSIQS 330
Query: 236 TIVA 239
I+A
Sbjct: 331 EIIA 334
>gi|422349688|ref|ZP_16430577.1| tRNA dihydrouridine synthase A [Sutterella wadsworthensis
2_1_59BFAA]
gi|404657897|gb|EKB30777.1| tRNA dihydrouridine synthase A [Sutterella wadsworthensis
2_1_59BFAA]
Length = 328
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 106/178 (59%), Gaps = 4/178 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LML+P+ V + + T+ PV+VK RIGVDDH+ Y + D
Sbjct: 94 NCGCPSERVQ-KGSFGACLMLEPQTVAACVRAMQDVTDKPVTVKHRIGVDDHNEYGFVRD 152
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V + R FI+H+R A L G+SP ENR +PPL E + L +DFPD +NG I
Sbjct: 153 FVGTVYD-AGCRVFIVHTRSAWLKGLSPKENREVPPLVRETAFRLKKDFPDTVMLINGQI 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
++DE A + G VMVGRAAYQNPW G VD +YG +TR + V + Y
Sbjct: 212 ASLDEAKALVDAGMDGVMVGRAAYQNPWMLAG-VDEVLYGVEHD-VTRLECVHRMTAY 267
>gi|188025481|ref|ZP_02958806.2| hypothetical protein PROSTU_00565 [Providencia stuartii ATCC 25827]
gi|188023335|gb|EDU61375.1| tRNA dihydrouridine synthase A [Providencia stuartii ATCC 25827]
Length = 336
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 120/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM D + V + + + ++PV+VK RIG+D+ DSY LCD
Sbjct: 102 NVGCPSDRVQ-NGRFGACLMADAQLVADCVKAMQDVVSIPVTVKTRIGIDEQDSYEFLCD 160
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 161 FIDTVSTKGGCEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMAINGGI 220
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E LR VMVGR AYQNP L VD ++ + + V + Y +
Sbjct: 221 KTLEEAKEHLRH-LDGVMVGREAYQNP-SILTAVDNQLFDSQLPVVNAVDAVRQMFPYIE 278
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 279 KELSQGTY------LGHITRHMLGIFQGIPGARQWRR 309
>gi|429098155|ref|ZP_19160261.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 582]
gi|426284495|emb|CCJ86374.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 582]
Length = 331
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 127/240 (52%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+D+ DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGRFGACLMGEAQLVADCIKAMRDVVSIPVTVKTRIGIDEQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLRRDFPQLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E A L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 216 KTLEEAKAHLEH-MDGVMVGREAYQNPGL-LASVDRDIFGLDTPVADPVAVVRAMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L +N ++ + + +L F PG ++R S LE+ + + D
Sbjct: 274 REL----SNGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKPGADISVLEQALKLVAD 329
>gi|120600206|ref|YP_964780.1| tRNA-dihydrouridine synthase A [Shewanella sp. W3-18-1]
gi|120560299|gb|ABM26226.1| TIM-barrel protein, yjbN family [Shewanella sp. W3-18-1]
Length = 343
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L
Sbjct: 108 NVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTY 166
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V++ T F IH+RKA L G+SP ENR IPPL YE Y L RD+P L ++NGG+
Sbjct: 167 FIDIVNAKGCT-DFTIHARKAWLQGLSPKENREIPPLDYERVYQLKRDYPVLNISINGGV 225
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L + VM+GR AYQNP Y L VD + G+ + ++R V+E Y +
Sbjct: 226 TTLEQAQGHLAQ-LDGVMMGREAYQNP-YILARVDQVLCGSQRAVISREDVIEAMLPYIE 283
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L G + + + ++ F PG ++R
Sbjct: 284 AHLQAGG----RLNHITRHMIGLFQGLPGARAWRR 314
>gi|295689004|ref|YP_003592697.1| YjbN family TIM-barrel protein [Caulobacter segnis ATCC 21756]
gi|295430907|gb|ADG10079.1| TIM-barrel protein, yjbN family [Caulobacter segnis ATCC 21756]
Length = 339
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 117/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P V E M+ I VP +VKCRIGVDD D L
Sbjct: 94 NVGCPSDRVQS-GRFGACLMREPNLVAECMAAIKDAVKVPATVKCRIGVDDQDPEESLFT 152
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+ + ++ + +FI+H+RKA L G+SP ENR IPPL YE Y L R+ P+LT +NGG+
Sbjct: 153 LVDRCAA-AGIDNFIVHARKAWLQGLSPKENRDIPPLDYELVYRLKRERPNLTIAINGGV 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+VD L G VM+GRAAY LG VD ++G + + + VE+Y+ Y
Sbjct: 212 PSVDAALEHLANGVDGVMLGRAAYHEAGL-LGEVDRRVFGLDVADVDSFEAVERYRPY-- 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L H+ + + +L FH PG ++R
Sbjct: 269 --LARELAAGTHLAAMTRHMLGLFHGLPGARAWRR 301
>gi|386742972|ref|YP_006216151.1| tRNA-dihydrouridine synthase A [Providencia stuartii MRSN 2154]
gi|384479665|gb|AFH93460.1| tRNA-dihydrouridine synthase A [Providencia stuartii MRSN 2154]
Length = 327
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 120/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM D + V + + + ++PV+VK RIG+D+ DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMADAQLVADCVKAMQDVVSIPVTVKTRIGIDEQDSYEFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 152 FIDTVSTKGGCEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMAINGGI 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E LR VMVGR AYQNP L VD ++ + + V + Y +
Sbjct: 212 KTLEEAKEHLRH-LDGVMVGREAYQNP-SILTAVDNQLFDSQLPVVNAVDAVRQMFPYIE 269
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 270 KELSQGTY------LGHITRHMLGIFQGIPGARQWRR 300
>gi|456877498|gb|EMF92516.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. ST188]
Length = 350
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 135/248 (54%), Gaps = 7/248 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V E + + + ++PV+VKCRIG+ ++ LC
Sbjct: 104 NVGCPSDRVR-EGNFGACLMKNPERVAELVFAMDTSVSIPVTVKCRIGIPGKETLEDLCR 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + + FI+H+R A+L G+SPA+NR +PPL+Y AL R+FP+L +NGGI
Sbjct: 163 FIECVRQ-AGVKRFIVHARIAILGGLSPAQNRQVPPLRYADVEALKREFPNLLIEINGGI 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E+ L K VM+GRAAY+ P Y VD+ + S L+R +V+ + + Y +
Sbjct: 222 RTIAEMRERL-KTNDGVMIGRAAYETP-YLFSEVDSLFFNDDSPSLSRGEVLLRMRDYVE 279
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH G F+R + L + + I D
Sbjct: 280 EVVLKEKNGKPH--HALRHILGLFHGVKGARSFRRTLTERMYHDYS-SDLLSDAVQEIRD 336
Query: 243 SVLDSPIE 250
LD ++
Sbjct: 337 DTLDLKLQ 344
>gi|206576636|ref|YP_002241010.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae 342]
gi|206565694|gb|ACI07470.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae 342]
Length = 332
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 123/240 (51%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LC+
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAPLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCE 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y + L RDFP LT +NGGI
Sbjct: 157 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQLKRDFPHLTMAINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 217 KSLDEARLQLEH-MDGVMVGREAYQNPG-ILASVDREIFGIAGADADPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L +N ++ + + +L F PG ++R + LE + + D
Sbjct: 275 REL----SNGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADIAVLEHALKLVAD 330
>gi|114046253|ref|YP_736803.1| tRNA-dihydrouridine synthase A [Shewanella sp. MR-7]
gi|113887695|gb|ABI41746.1| TIM-barrel protein, yjbN family [Shewanella sp. MR-7]
Length = 340
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 130/244 (53%), Gaps = 15/244 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L
Sbjct: 104 NVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTH 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + FIIH+RKA L G+SP ENR IPPL Y+ Y L RD+ L ++NGGI
Sbjct: 163 FIDTVMA-KGCGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQLKRDYSTLNISINGGI 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L+ VMVGR AYQNP Y L VD + G+ + ++R V+E Y +
Sbjct: 222 TSLEQAKTHLQH-LDGVMVGREAYQNP-YILAQVDQLLCGSQKAVISREAVIEAMLPYIE 279
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
A L G + + + ++ F PG ++R K A + K ++
Sbjct: 280 AHLQAGGR----LNHITRHMIGLFQGLPGARAWRRYLSENAHKNGAGIEVVKQAYQSIQS 335
Query: 236 TIVA 239
I+A
Sbjct: 336 EIIA 339
>gi|359450016|ref|ZP_09239485.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20480]
gi|358044183|dbj|GAA75734.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20480]
Length = 324
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 132/243 (54%), Gaps = 14/243 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+D+ DSY LC
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMAEPELVAQCVAAMKNEVSIPVTVKTRIGIDEQDSYEFLCA 151
Query: 63 FI---YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 119
I YKV FIIH+RKA LNG+SP ENR +PPL Y Y L +D+P L ++N
Sbjct: 152 LIEASYKVG----CDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQLKKDYPQLDLSIN 207
Query: 120 GGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQI 179
GG+ T+++ L+ VMVGR AY NP + L VD IYG ++ TR VV
Sbjct: 208 GGVKTIEQSLEHLQY-IDGVMVGREAYSNP-FMLNEVDEKIYGDTANTQTRHDVVRSMYD 265
Query: 180 YGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVA 239
Y + + G N H V + +L F +PG F+R + S +++ +
Sbjct: 266 YIEEEM-RLGANFWH---VARHMLGIFQGQPGARGFRRHLSENGHGKQADLSVMDKALSF 321
Query: 240 IPD 242
+P+
Sbjct: 322 VPE 324
>gi|290512395|ref|ZP_06551762.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 1_1_55]
gi|289775390|gb|EFD83391.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 1_1_55]
Length = 331
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 123/240 (51%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LC+
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAPLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCE 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y + L RDFP LT +NGGI
Sbjct: 156 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQLKRDFPHLTMAINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 216 KSLDEARLQLEH-MDGVMVGREAYQNPG-ILASVDREIFGIAGADADPVAVVRAMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L +N ++ + + +L F PG ++R + LE + + D
Sbjct: 274 REL----SNGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADIAVLEHALKLVAD 329
>gi|217423368|ref|ZP_03454869.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 576]
gi|217393226|gb|EEC33247.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 576]
Length = 439
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 112/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 196 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 254
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 255 FVGTVAAAG-CDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 313
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 314 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 371
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 372 AELARGTY 379
>gi|76809017|ref|YP_333391.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1710b]
gi|76578470|gb|ABA47945.1| dihydrouridine synthase [Burkholderia pseudomallei 1710b]
Length = 442
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 112/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 199 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 257
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 258 FVGTVAAAG-CDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 316
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 317 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 374
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 375 AELARGTY 382
>gi|121600739|ref|YP_993040.1| tRNA-dihydrouridine synthase A [Burkholderia mallei SAVP1]
gi|251768090|ref|ZP_04820399.1| tRNA-dihydrouridine synthase A [Burkholderia mallei PRL-20]
gi|121229549|gb|ABM52067.1| tRNA-dihydrouridine synthase A [Burkholderia mallei SAVP1]
gi|243060848|gb|EES43034.1| tRNA-dihydrouridine synthase A [Burkholderia mallei PRL-20]
Length = 436
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 112/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 193 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 251
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 252 FVGTVAAAG-CDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 310
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 311 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 368
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 369 AELARGTY 376
>gi|134282264|ref|ZP_01768969.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 305]
gi|134246302|gb|EBA46391.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 305]
Length = 379
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 113/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 136 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 194
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 195 FVGTVAA-AGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 253
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 254 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 311
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 312 AELARGTY 319
>gi|167902837|ref|ZP_02490042.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei NCTC
13177]
Length = 339
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 113/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 155 FVGTVAT-AGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 214 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 271
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 272 AELARGTY 279
>gi|427419226|ref|ZP_18909409.1| tRNA-U16,U17-dihydrouridine synthase [Leptolyngbya sp. PCC 7375]
gi|425761939|gb|EKV02792.1| tRNA-U16,U17-dihydrouridine synthase [Leptolyngbya sp. PCC 7375]
Length = 341
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 124/215 (57%), Gaps = 9/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V + ++ + A ++PV+VK RIG+DD D Y +
Sbjct: 97 NVGCPSNRVQS-GNFGACLMSQPELVADCVAAMQAVVDIPVTVKHRIGIDDCDRYEDMVR 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ R F +H+RKA L G+SP +NRTIPPL+Y+ Y L ++ P+L +NGGI
Sbjct: 156 FVTTVTAAGCHR-FTVHARKAWLQGLSPKDNRTIPPLRYDDVYRLKQEHPELWIEINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E + L++ VM+GRAAY P Y D IY A ++ LTR Q+V Y
Sbjct: 215 KTLEEADTHLQQ-VDAVMIGRAAYDTP-YLFAVADRDIYAA-NAPLTRHQIVAAMLPY-- 269
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + + +L FH +PG+ +KR
Sbjct: 270 --IARWTEQGTKLHSITRHMLQLFHGQPGSRAWKR 302
>gi|237812120|ref|YP_002896571.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei MSHR346]
gi|237505677|gb|ACQ97995.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei MSHR346]
Length = 439
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 112/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 196 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 254
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 255 FVGTVAAAG-CDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 313
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 314 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 371
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 372 AELARGTY 379
>gi|374336814|ref|YP_005093501.1| tRNA-dihydrouridine synthase A [Oceanimonas sp. GK1]
gi|372986501|gb|AEY02751.1| tRNA-dihydrouridine synthase A [Oceanimonas sp. GK1]
Length = 316
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 125/243 (51%), Gaps = 12/243 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P V E ++ + A ++PV+VK RIG+D+ DSY LC
Sbjct: 79 NVGCPSDRVQ-NGLFGACLMAHPHTVAEGVAAMKAAVSIPVTVKTRIGIDEQDSYEFLCT 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+ KV+ + I+H+RKA L G+SP ENR IPPL Y+ Y L RD+P LT +NGGI
Sbjct: 138 LVDKVAE-AGVDALIVHARKAWLQGLSPKENRDIPPLDYDRVYQLKRDYPGLTIAVNGGI 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L VM+GR YQNP Y L VD ++ +R QV+ + Y +
Sbjct: 197 KTLEEARVHL-ANLDGVMLGREVYQNP-YLLARVDAELFNDEHEAPSRHQVIRQLLPYIE 254
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
L GTY N + + L F PG ++R +E + +
Sbjct: 255 RELTQGTYLGN------ITRHTLGIFQGMPGARAWRRHLSENAHKRGAGPEVVEAAMARV 308
Query: 241 PDS 243
P+
Sbjct: 309 PEE 311
>gi|238563470|ref|ZP_00438839.2| tRNA-dihydrouridine synthase A [Burkholderia mallei GB8 horse 4]
gi|238520653|gb|EEP84111.1| tRNA-dihydrouridine synthase A [Burkholderia mallei GB8 horse 4]
Length = 439
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 112/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 196 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 254
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 255 FVGTVAAAG-CDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 313
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 314 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 371
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 372 AELARGTY 379
>gi|291086669|ref|ZP_06356403.2| tRNA-dihydrouridine synthase A [Citrobacter youngae ATCC 29220]
gi|291067402|gb|EFE05511.1| tRNA-dihydrouridine synthase A [Citrobacter youngae ATCC 29220]
Length = 313
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 120/217 (55%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 79 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDLDSYEFLCD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 138 FINTVAGKGECEMFIIHARKAWLSGLSPKENREIPPLDYARVYQLKRDFPHLTMSINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VMVGR AYQNP L VD I+ A + VV Y +
Sbjct: 198 KSLEEAKIHLQH-MDGVMVGREAYQNPG-ILASVDREIFAAATHDADPVAVVRAMYPYIE 255
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + V + +L F PG ++R
Sbjct: 256 RELSQGTY------LGHVTRHMLGLFQGIPGARQWRR 286
>gi|53723486|ref|YP_102906.1| tRNA-dihydrouridine synthase A [Burkholderia mallei ATCC 23344]
gi|124383650|ref|YP_001026373.1| tRNA-dihydrouridine synthase A [Burkholderia mallei NCTC 10229]
gi|126449152|ref|YP_001080353.1| tRNA-dihydrouridine synthase A [Burkholderia mallei NCTC 10247]
gi|167894436|ref|ZP_02481838.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 7894]
gi|254199845|ref|ZP_04906211.1| tRNA-dihydrouridine synthase A [Burkholderia mallei FMH]
gi|254206173|ref|ZP_04912525.1| tRNA-dihydrouridine synthase A [Burkholderia mallei JHU]
gi|254358573|ref|ZP_04974846.1| tRNA-dihydrouridine synthase A [Burkholderia mallei 2002721280]
gi|52426909|gb|AAU47502.1| dihydrouridine synthase [Burkholderia mallei ATCC 23344]
gi|124291670|gb|ABN00939.1| tRNA-dihydrouridine synthase A [Burkholderia mallei NCTC 10229]
gi|126242022|gb|ABO05115.1| tRNA-dihydrouridine synthase A [Burkholderia mallei NCTC 10247]
gi|147749441|gb|EDK56515.1| tRNA-dihydrouridine synthase A [Burkholderia mallei FMH]
gi|147753616|gb|EDK60681.1| tRNA-dihydrouridine synthase A [Burkholderia mallei JHU]
gi|148027700|gb|EDK85721.1| tRNA-dihydrouridine synthase A [Burkholderia mallei 2002721280]
Length = 339
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 113/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 155 FVGTVAA-AGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 214 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 271
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 272 AELARGTY 279
>gi|254197994|ref|ZP_04904416.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei S13]
gi|169654735|gb|EDS87428.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei S13]
Length = 377
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 113/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 134 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 192
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 193 FVGTVAA-AGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 251
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 252 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 309
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 310 AELARGTY 317
>gi|402566633|ref|YP_006615978.1| yjbN family TIM-barrel protein [Burkholderia cepacia GG4]
gi|402247830|gb|AFQ48284.1| TIM-barrel protein, yjbN family [Burkholderia cepacia GG4]
Length = 328
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 121/217 (55%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSVPVTVKHRIGVDAVEDYAFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 139 FVGTVAE-AGCETFVVHARNAILKGLSPKENREIPPLKYDYAYQLKRDFPSLEIVINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L VM+GR AY NP Y L VD YGA + TR + + Y
Sbjct: 198 KTLDEVAQHLEH-VDGVMLGREAYHNP-YVLAGVDARFYGATAEAPTREEAEAQLIEYCA 255
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L GTY + +++ L + PG ++R
Sbjct: 256 AELKRGTY------LGAIVRHALGLYRGAPGARGWRR 286
>gi|422304758|ref|ZP_16392098.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9806]
gi|389790067|emb|CCI14030.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9806]
Length = 331
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 118/215 (54%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V +S + ++PV+VK RIG+DD DSY + +
Sbjct: 89 NVGCPSSRVK-EGNFGACLMANPELVARGISAMNQAVSIPVTVKQRIGIDDQDSYENMAN 147
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ R F IH+RKA L G+SP ENRT+PPL+Y+ Y L FP L +NGGI
Sbjct: 148 FVRIVADAGCQR-FTIHARKAWLQGLSPKENRTVPPLRYDDVYRLKNQFPHLFIEINGGI 206
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ L+ VM+GRAAY NP Y VD YG + TR +V++K Y D
Sbjct: 207 INLEQARQHLQL-VDAVMIGRAAYDNP-YLFATVDRDFYGESVTPPTREEVIKKMLPYID 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + K LL F +PG +KR
Sbjct: 265 ----EWVRKGYKLHQISKHLLQLFAGQPGTKAWKR 295
>gi|171317498|ref|ZP_02906688.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria MEX-5]
gi|172060541|ref|YP_001808193.1| tRNA-dihydrouridine synthase A [Burkholderia ambifaria MC40-6]
gi|171097327|gb|EDT42172.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria MEX-5]
gi|171993058|gb|ACB63977.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria MC40-6]
Length = 328
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 112/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSVPVTVKHRIGVDAVEDYAFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KV+ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 139 FVGKVAE-AGCETFVVHARNAILKGLSPKENREIPPLKYDYAYQLKRDFPSLEIVINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L VM+GR AY NP Y L VD YG+ ++ TR + K Y
Sbjct: 198 KTLDEVAQHLEH-VDGVMLGREAYHNP-YVLAGVDARFYGSTAAVPTREEAEAKLIEYCA 255
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 256 AELKRGTY 263
>gi|53719465|ref|YP_108451.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei K96243]
gi|126438522|ref|YP_001058864.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 668]
gi|126452196|ref|YP_001066108.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1106a]
gi|167719732|ref|ZP_02402968.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei DM98]
gi|167738727|ref|ZP_02411501.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 14]
gi|167815950|ref|ZP_02447630.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 91]
gi|167911080|ref|ZP_02498171.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 112]
gi|52209879|emb|CAH35851.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|126218015|gb|ABN81521.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 668]
gi|126225838|gb|ABN89378.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1106a]
Length = 339
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 113/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 155 FVGTVAA-AGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 214 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 271
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 272 AELARGTY 279
>gi|254258242|ref|ZP_04949296.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1710a]
gi|254216931|gb|EET06315.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1710a]
Length = 339
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 113/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 155 FVGTVAA-AGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 214 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 271
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 272 AELARGTY 279
>gi|115351522|ref|YP_773361.1| tRNA-dihydrouridine synthase A [Burkholderia ambifaria AMMD]
gi|115281510|gb|ABI87027.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia ambifaria AMMD]
Length = 344
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 112/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSVPVTVKHRIGVDAVEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KV+ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 155 FVGKVAE-AGCETFVVHARNAILKGLSPKENREIPPLKYDYAYQLKRDFPSLEIVINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L VM+GR AY NP Y L VD YG+ ++ TR + K Y
Sbjct: 214 KTLDEVAQHLEH-VDGVMLGREAYHNP-YVLAGVDARFYGSTAAVPTREEAEAKLIEYCA 271
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 272 AELKRGTY 279
>gi|186476399|ref|YP_001857869.1| YjbN family TIM-barrel protein [Burkholderia phymatum STM815]
gi|184192858|gb|ACC70823.1| TIM-barrel protein, yjbN family [Burkholderia phymatum STM815]
Length = 333
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 112/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVDD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMKEPELVADCVKAMRDAVSVPVTVKHRIGVDDVEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 155 FVGTIAD-AGCDVFIVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQLEIIINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L+ VM+GR AY NP + L VD YG+ + TR + + Y
Sbjct: 214 KTLDEVETHLQH-VDGVMLGREAYHNP-FVLADVDARFYGSTDAAPTREEAEAQLIEYCR 271
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 272 AELARGTY 279
>gi|242317073|ref|ZP_04816089.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1106b]
gi|242140312|gb|EES26714.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1106b]
Length = 439
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 112/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 196 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 254
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 255 FVGTVAAAG-CDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 313
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 314 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 371
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 372 AELARGTY 379
>gi|418541069|ref|ZP_13106570.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1258a]
gi|418547309|ref|ZP_13112472.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1258b]
gi|385359224|gb|EIF65198.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1258a]
gi|385361779|gb|EIF67653.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1258b]
Length = 323
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 113/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 139 FVGTVAA-AGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 198 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 255
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 256 AELARGTY 263
>gi|443648745|ref|ZP_21130078.1| tRNA dihydrouridine synthase A family protein [Microcystis
aeruginosa DIANCHI905]
gi|159029932|emb|CAO90311.1| dus2 [Microcystis aeruginosa PCC 7806]
gi|443335102|gb|ELS49583.1| tRNA dihydrouridine synthase A family protein [Microcystis
aeruginosa DIANCHI905]
Length = 352
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V +S + ++PV+VK RIG+DD DSY + +
Sbjct: 113 NVGCPSSRVK-EGNFGACLMANPELVARGISAMNQAVSIPVTVKQRIGIDDQDSYENMAN 171
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ R F IH+RKA L G+SP ENRT+PPL+Y+ Y L FP L +NGGI
Sbjct: 172 FVRIVADAGCQR-FTIHARKAWLQGLSPKENRTVPPLRYDDVYRLKNQFPHLFIEINGGI 230
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ L+ VM+GRAAY NP Y VD YG + TR ++++K Y D
Sbjct: 231 INLEQARQHLQL-VDAVMIGRAAYDNP-YLFATVDRDFYGESVTPPTREEIIKKMLPYID 288
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + K LL F +PG +KR
Sbjct: 289 ----EWVSKGYKLHQISKHLLQLFAGQPGTKAWKR 319
>gi|254245521|ref|ZP_04938842.1| tRNA-dihydrouridine synthase [Burkholderia cenocepacia PC184]
gi|124870297|gb|EAY62013.1| tRNA-dihydrouridine synthase [Burkholderia cenocepacia PC184]
Length = 359
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 123/217 (56%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 111 NCGCPSERVQ-RGAFGACLMNEPQLVADCVRAMRDAVSVPVTVKHRIGVDAVEDYAFVRD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 170 FVGTVAE-AGCETFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPSLEIVINGGI 228
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L + VM+GR AY NP Y L VD YGA ++ TR + + Y
Sbjct: 229 TTLDEVAQHL-EHVDGVMLGREAYHNP-YVLAEVDARFYGATAAVPTREEAEAQLIAYCA 286
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L GTY + +++ L + PG ++R
Sbjct: 287 AELKRGTY------LGAIVRHALGLYRGMPGARGWRR 317
>gi|226196332|ref|ZP_03791914.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei Pakistan
9]
gi|254297746|ref|ZP_04965199.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 406e]
gi|386861884|ref|YP_006274833.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1026b]
gi|403518544|ref|YP_006652677.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei BPC006]
gi|418387439|ref|ZP_12967302.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 354a]
gi|418534028|ref|ZP_13099879.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1026a]
gi|418553491|ref|ZP_13118314.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 354e]
gi|157807557|gb|EDO84727.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 406e]
gi|225931549|gb|EEH27554.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei Pakistan
9]
gi|385360277|gb|EIF66216.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1026a]
gi|385371644|gb|EIF76811.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 354e]
gi|385376345|gb|EIF81036.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 354a]
gi|385659012|gb|AFI66435.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1026b]
gi|403074186|gb|AFR15766.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei BPC006]
Length = 323
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 113/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 139 FVGTVAA-AGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 198 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 255
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 256 AELARGTY 263
>gi|344343484|ref|ZP_08774352.1| TIM-barrel protein, yjbN family [Marichromatium purpuratum 984]
gi|343804907|gb|EGV22805.1| TIM-barrel protein, yjbN family [Marichromatium purpuratum 984]
Length = 328
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 119/213 (55%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P V + + + VPV+VK RIG+DD DSY +L DF+
Sbjct: 95 GCPSDRVQ-NGRFGACLMAEPGVVADCVRAMKDAVAVPVTVKSRIGIDDRDSYGELVDFV 153
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+ I+H+RKA L+G+SP ENR IPPL+Y+ L RDFP L+ +LNGG+
Sbjct: 154 -GAQVEAGCDALIVHARKAWLSGLSPKENRDIPPLRYDVVLQLKRDFPALSISLNGGVQD 212
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+D+ AL + VM+GR AY NPW L D I+ P+ TR QV+E+ Y I
Sbjct: 213 LDQA-CALLETLDGVMIGREAYHNPW-ILAAADARIFADPTPPPTRHQVIERMLPY---I 267
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
P + + + LL F PG +++R
Sbjct: 268 QRELDAGVP-LTAISRHLLGLFQGRPGARVWRR 299
>gi|453063437|gb|EMF04416.1| tRNA-dihydrouridine synthase A [Serratia marcescens VGH107]
Length = 336
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 120/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGQATLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR +PPL Y Y L RDFP LT +NGG+
Sbjct: 157 FIQTVAGRGECDMFTIHARKAWLSGLSPKENREVPPLDYPRAYQLKRDFPALTIAINGGV 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP L VD+ ++GA ++ +VE Y +
Sbjct: 217 KTLEEAQQHLQH-LDGVMMGREAYQNPG-ILARVDSELFGAQTAVPDSVAIVEALYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 275 REL----SNGTYLGHITRHILGLFQGVPGARQWRR 305
>gi|377579682|ref|ZP_09808646.1| tRNA-dihydrouridine synthase A [Escherichia hermannii NBRC 105704]
gi|377538999|dbj|GAB53811.1| tRNA-dihydrouridine synthase A [Escherichia hermannii NBRC 105704]
Length = 332
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LC+
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCE 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ A L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 217 TSLEQAKAHLEH-MDGVMVGREAYQNPG-MLAAVDREIFGVAGASPDPVSVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + ++ + + +L F PG ++R
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGVPGARQWRR 305
>gi|377820579|ref|YP_004976950.1| tRNA-dihydrouridine synthase A [Burkholderia sp. YI23]
gi|357935414|gb|AET88973.1| tRNA-dihydrouridine synthase A [Burkholderia sp. YI23]
Length = 334
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 122/217 (56%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMKEPQLVADCVKAMRDAVSIPVTVKHRIGVDTVEDYEFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPLKYEY Y L RDFP L ++NGGI
Sbjct: 155 FVGTIAD-AGCEVFIVHARNAILKGLSPKENREIPPLKYEYAYRLKRDFPHLEISINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L K VM+GR AY NP Y L VDT YGA + +R + + Y
Sbjct: 214 KTLDEVEEHL-KHVDGVMLGREAYHNP-YVLAGVDTRFYGADTPVPSREAIEAELIDYAR 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + V + L + PG ++R
Sbjct: 272 HELARGTY------LGAVTRHALGLYRGVPGARGWRR 302
>gi|77359457|ref|YP_339032.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas haloplanktis
TAC125]
gi|76874368|emb|CAI85589.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas haloplanktis
TAC125]
Length = 310
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 131/240 (54%), Gaps = 8/240 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + A N+PV+VK RIG+D+ DSY LC
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMGEPQLVADCVAAMKAEVNIPVTVKTRIGIDEQDSYEFLCA 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
I + S FIIH+RKA L G+SP ENR +PPL Y Y L +D+P L +LNGG+
Sbjct: 138 LI-EASHNVGCDDFIIHARKAWLKGLSPKENREVPPLDYPRVYQLKKDYPQLDLSLNGGV 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VM+GR AY NP + L VD IYG ++ +R VV Y +
Sbjct: 197 KTIEQSLEHLQH-IDGVMIGREAYSNP-FILNEVDEKIYGDIANTQSRHDVVRSMYSYIE 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ G N H V + +L F +PG F+R + S +++ + +P+
Sbjct: 255 DEM-RLGANFWH---VARHMLGIFQGQPGARGFRRHLSENGHGKQADLSVMDKALSFVPE 310
>gi|146291866|ref|YP_001182290.1| tRNA-dihydrouridine synthase A [Shewanella putrefaciens CN-32]
gi|145563556|gb|ABP74491.1| TIM-barrel protein, yjbN family [Shewanella putrefaciens CN-32]
Length = 343
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 122/215 (56%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E + + ++PV+VK RIG+D+ DSY L
Sbjct: 108 NVGCPSDRVQ-NGRFGACLMAEPDLVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTY 166
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V++ T F IH+RKA L G+SP ENR IPPL YE Y L RD+P L ++NGG+
Sbjct: 167 FIDIVNAKGCT-DFTIHARKAWLQGLSPKENREIPPLDYERVYQLKRDYPVLNISINGGV 225
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L + VM+GR AYQNP Y L VD + G+ + ++R V+E Y +
Sbjct: 226 TTLEQAQGHLAQ-LDGVMMGREAYQNP-YILARVDQVLCGSQRAVISREDVIEAMLPYIE 283
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L G + + + ++ F PG ++R
Sbjct: 284 AHLQAGG----RLNHITRHMIGLFQGLPGARAWRR 314
>gi|365846158|ref|ZP_09386663.1| tRNA dihydrouridine synthase A [Yokenella regensburgei ATCC 43003]
gi|364574270|gb|EHM51735.1| tRNA dihydrouridine synthase A [Yokenella regensburgei ATCC 43003]
Length = 332
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 120/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 157 FINTVSGHGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMAINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VMVGR AYQNP L VD I+ A ++ VV Y +
Sbjct: 217 KSLEEAKIHLQH-MDGVMVGREAYQNPG-MLTAVDREIFAASAADPDPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 275 REL----SNGTYLGHMTRHMLGLFQGIPGARQWRR 305
>gi|167845866|ref|ZP_02471374.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei B7210]
Length = 333
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 113/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 79 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 138 FVGTVAA-AGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 197 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 254
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 255 AELARGTY 262
>gi|410625982|ref|ZP_11336752.1| tRNA-dihydrouridine synthase A [Glaciecola mesophila KMM 241]
gi|410154602|dbj|GAC23521.1| tRNA-dihydrouridine synthase A [Glaciecola mesophila KMM 241]
Length = 304
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +PK V + + ++PV+VK RIG+DD D Y L D
Sbjct: 54 NVGCPSDRVQ-NGRFGACLMAEPKTVAACIQAMQKEVDIPVTVKSRIGIDDMDEYKDLTD 112
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ + F +H+RKA L G+SP ENR IPPL Y+ Y+L +FP L ++NGG+
Sbjct: 113 FIQIVAD-AGCDIFTVHARKAWLKGLSPKENRDIPPLMYDRVYSLKEEFPQLNLSINGGV 171
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+ A L K VM+GR Y NP Y L VD Y S +R ++V Y +
Sbjct: 172 KTLDDAAAHLEK-LDGVMIGREVYSNP-YILADVDKRFYQDDSPVPSREEIVHAMLPYVE 229
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A + + ++ + +L F +PG +++R
Sbjct: 230 AQMASGA----RAWNIARHMLGLFQGQPGGRIWRR 260
>gi|237748250|ref|ZP_04578730.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes OXCC13]
gi|229379612|gb|EEO29703.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes OXCC13]
Length = 330
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 120/215 (55%), Gaps = 4/215 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM + V + + ++ V+VK RIG+D ++SY+ + D
Sbjct: 95 NCGCPSERVQ-KGAFGACLMSESTLVANCVKAMQDAVSIDVTVKHRIGIDKNESYDFVRD 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V+ + + FI+H+R A+L G+SP ENR IPPL+YE Y L +DFP+L LNGGI
Sbjct: 154 FIGEVAE-AGCKTFIVHARNAILKGLSPRENREIPPLRYEVVYQLKKDFPELEILLNGGI 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T DEV + K VM+GRAAY P Y + D Y P++ T VV+ Y +
Sbjct: 213 ETADEVGEHI-KHVDGVMIGRAAYHYP-YRMAEFDARFYDDPTTATTPADVVKAMMPYIE 270
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L YG+ + + + +L PG F++
Sbjct: 271 KQLSLYGSKGLKMHGITRHMLGLMTGLPGARRFRQ 305
>gi|160872814|ref|ZP_02062946.1| tRNA-dihydrouridine synthase A [Rickettsiella grylli]
gi|159121613|gb|EDP46951.1| tRNA-dihydrouridine synthase A [Rickettsiella grylli]
Length = 330
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 133/241 (55%), Gaps = 16/241 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS KV G FGV L+ +P V +A++ + A +PV+VK RIGVD+ +SY+ L
Sbjct: 97 NVGCPSEKVQS-GGFGVVLLKEPNRVADAIAAMKAVVRLPVTVKTRIGVDNDESYDYLAS 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +VS L+ FIIH+RKA L+G+SP ENR IPPL Y + Y + RDFP LT LNGGI
Sbjct: 156 FIRQVS-LAGCDTFIIHARKAWLHGVSPKENREIPPLNYPWVYQIKRDFPHLTIVLNGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLT---RRQVVEKYQI 179
+ L+ VM+GRAA+ NP Y +D I +P R ++ +Y
Sbjct: 215 TCLKRAYQQLQH-VDAVMIGRAAWYNP-YLFAQLDALI--SPQDRFIVPHRFSIILQYLP 270
Query: 180 YGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQ---TCKTVKSFLEET 236
Y + L + G N H +++PLL FH G +++ Q + +K L+E
Sbjct: 271 YLEKALKS-GENLAH---LIQPLLGLFHGVVGTKQWRQTLSELLQRRYSFVKIKETLQEF 326
Query: 237 I 237
I
Sbjct: 327 I 327
>gi|167824321|ref|ZP_02455792.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 9]
Length = 334
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 113/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 139 FVGTVAA-AGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 198 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 255
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 256 AELARGTY 263
>gi|416934020|ref|ZP_11933791.1| tRNA-dihydrouridine synthase A [Burkholderia sp. TJI49]
gi|325525397|gb|EGD03227.1| tRNA-dihydrouridine synthase A [Burkholderia sp. TJI49]
Length = 328
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 122/217 (56%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMNDAVSVPVTVKHRIGVDAVEDYAFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP+L +NGGI
Sbjct: 139 FVGTVAE-AGCATFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPELEIVINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L VM+GR AY NP Y L VD YG+ + TR + K Y
Sbjct: 198 TTLDEVAQHLEH-VDGVMLGREAYHNP-YVLAGVDARFYGSTDAAPTREEAEAKLIEYCA 255
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L GTY + +++ L + PG ++R
Sbjct: 256 AELKRGTY------LGAIVRHALGLYRGMPGARGWRR 286
>gi|421112110|ref|ZP_15572574.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. JET]
gi|410802519|gb|EKS08673.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. JET]
Length = 344
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 134/248 (54%), Gaps = 7/248 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V E + + + ++PV+VKCRIG+ ++ LC
Sbjct: 98 NVGCPSDRVR-EGNFGACLMKTPERVAELVFAMDTSVSIPVTVKCRIGIPGKETLEDLCR 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + + FI+H+R A+L G+SPA+NR +PPL+Y AL R+FP+L +NGGI
Sbjct: 157 FIECVRQ-AGVKRFIVHARIAILGGLSPAQNRQVPPLRYADVEALKREFPNLLIEINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E+ L K VM+GRAAY+ P Y VD+ + S L+R +V+ + + Y +
Sbjct: 216 RTIAEMRERL-KTNDGVMIGRAAYETP-YLFSEVDSLFFNDDSPSLSRGEVLLRMRDYVE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
++ N +PH ++ +L FH G F+R + L + + I D
Sbjct: 274 EVVLKEKNGKPH--HALRHILGLFHGVKGARSFRRTLTERMYHDYS-NDLLSDAVQEIRD 330
Query: 243 SVLDSPIE 250
LD ++
Sbjct: 331 DTLDLKLQ 338
>gi|336248184|ref|YP_004591894.1| tRNA-dihydrouridine synthase A [Enterobacter aerogenes KCTC 2190]
gi|334734240|gb|AEG96615.1| tRNA-dihydrouridine synthase A [Enterobacter aerogenes KCTC 2190]
Length = 332
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 116/215 (53%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAALVADCIKAMRDVVSIPVTVKTRIGIDDRDSYEFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y + L RDFP LT +NGGI
Sbjct: 157 FIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQLKRDFPHLTMAINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 217 KSLAEAKQQLEH-MDGVMVGREAYQNPG-ILASVDREIFGVDGADADPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 275 REL----SNGTYLGHITRHMLGLFQGIPGARQWRR 305
>gi|389793349|ref|ZP_10196517.1| tRNA-dihydrouridine synthase A [Rhodanobacter fulvus Jip2]
gi|388434371|gb|EIL91315.1| tRNA-dihydrouridine synthase A [Rhodanobacter fulvus Jip2]
Length = 308
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 120/215 (55%), Gaps = 10/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P VG+ + + +PV+VKCRIGVDD D Y L
Sbjct: 80 NVGCPSDRVQS-GRFGACLMREPALVGDCVRAMQQEVGIPVTVKCRIGVDDQDDYADLQH 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F + + +H+RKA L G+SP ENR IPPL YE Y L R+FP L +NGGI
Sbjct: 139 FTETMLE-AGVGVLAVHARKAWLQGLSPKENRDIPPLDYERVYRLKREFPQLIVVINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
TV++V A LR+ VM+GRAAY +P Y L ++ A+YG P +R ++ + Y +
Sbjct: 198 VTVEQVQAHLRQ-VDGVMLGRAAYHDP-YLLAQIEAALYGRPLP--SRDDILGHMRPYIE 253
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L G HV + +L + EPG F+R
Sbjct: 254 AELAR-GTALKHVS---RHVLGLYQGEPGARGFRR 284
>gi|358450745|ref|ZP_09161196.1| tRNA-dihydrouridine synthase A [Marinobacter manganoxydans MnI7-9]
gi|357225041|gb|EHJ03555.1| tRNA-dihydrouridine synthase A [Marinobacter manganoxydans MnI7-9]
Length = 344
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 127/240 (52%), Gaps = 15/240 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P V E + + T +PV+VK RIG+D +S++ LC+
Sbjct: 104 NVGCPSDRVQNN-MIGACLMGHPDKVAEGVRAMIEATELPVTVKHRIGIDGRESWDDLCE 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KVS + R FI+H+R A+L G+SP ENR +PPLKY++ Y L +P L +NGGI
Sbjct: 163 FVEKVSE-AGCRTFIVHARIAILEGLSPKENREVPPLKYDWVYRLKAKYPHLEIIINGGI 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T DE + LR VM+GR AY NPW G VD +G + TR Q + +
Sbjct: 222 KTFDECHEHLRH-TDGVMLGREAYHNPWLLAG-VDPEFFGEAAPVETRHQALRAMLPF-- 277
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
+G+ + + + LL FH +PG F+R K+ A + +T + E
Sbjct: 278 --IGSELERGVFLTHMSRHLLGLFHGQPGGRQFRRYISENAHKSGAGLEVIETALEKVRE 335
>gi|333929381|ref|YP_004502960.1| yjbN family TIM-barrel protein [Serratia sp. AS12]
gi|333934334|ref|YP_004507912.1| hypothetical protein SerAS9_4557 [Serratia plymuthica AS9]
gi|386331204|ref|YP_006027374.1| yjbN family TIM-barrel protein [Serratia sp. AS13]
gi|333475941|gb|AEF47651.1| TIM-barrel protein, yjbN family [Serratia plymuthica AS9]
gi|333493441|gb|AEF52603.1| TIM-barrel protein, yjbN family [Serratia sp. AS12]
gi|333963537|gb|AEG30310.1| TIM-barrel protein, yjbN family [Serratia sp. AS13]
Length = 336
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 118/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGQATLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F +H+RKA L+G+SP ENR +PPL Y Y L RDFP LT +NGG+
Sbjct: 157 FIATVAGRGECDMFTVHARKAWLSGLSPKENREVPPLDYPRVYQLKRDFPQLTLAINGGV 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L VM+GR AYQNP L +D+ ++G + + ++E Y +
Sbjct: 217 KTLEEAKQHLEH-LDGVMMGREAYQNPG-ILARIDSELFGRQTEVMDSVAIIESLYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 275 REL----SNGTYLGHITRHILGLFQGVPGARQWRR 305
>gi|386826391|ref|ZP_10113498.1| tRNA dihydrouridine synthase A [Beggiatoa alba B18LD]
gi|386427275|gb|EIJ41103.1| tRNA dihydrouridine synthase A [Beggiatoa alba B18LD]
Length = 332
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 120/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P V + ++ + N+P++VK RIG+D+ DSY LC
Sbjct: 90 NVGCPSDRVQS-GQFGACLMATPALVADCVATMKQAVNIPITVKSRIGIDELDSYEHLCH 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI ++ + FIIH+RKA L G+SP ENR IPPL Y+ + + DFP LT +NGG+
Sbjct: 149 FIQTIAQ-AGCDTFIIHARKAWLQGLSPKENREIPPLCYDVVHQIKTDFPHLTIIINGGL 207
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ +V L K VM+GR AYQNP Y L ++ + TR+ +VE+ Y
Sbjct: 208 KTIADVEQQLLK-VDGVMIGREAYQNP-YLLADLEQHFFNPNYQKPTRQAIVEQMIPY-- 263
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
I + R ++ ++ + LL F E G ++R
Sbjct: 264 -ITAELDSGRAYLANITRHLLGLFQGECGARHWRR 297
>gi|344341571|ref|ZP_08772489.1| TIM-barrel protein, yjbN family [Thiocapsa marina 5811]
gi|343798503|gb|EGV16459.1| TIM-barrel protein, yjbN family [Thiocapsa marina 5811]
Length = 312
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + ++ + VPV+VK RIG+DD DSY++L D
Sbjct: 80 NVGCPSDRVQ-NGRFGACLMAEPSLVADCVAAMKDAVAVPVTVKTRIGIDDRDSYDELLD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F V+ + ++H+RKA L G+SP ENR IPPL+YE L RD P T +NGGI
Sbjct: 139 FAGTVTE-AGCDALVVHARKAWLAGLSPKENRDIPPLRYEVVERLKRDLPHQTIAINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE A K VM+GR AY NPW L D I+G TR ++++ + Y +
Sbjct: 198 KTLDE-TAGFLKTLDGVMIGREAYHNPW-ILAEADRTIFGDARRAPTRNEILDAFLPYVE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L P + + + +L F +PG ++R
Sbjct: 256 REL---AGGTP-LSAMSRHILGLFQGQPGARAWRR 286
>gi|254179915|ref|ZP_04886514.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1655]
gi|184210455|gb|EDU07498.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1655]
Length = 339
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 113/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 155 FVGTVAA-AGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D YGA + TR +V K Y
Sbjct: 214 TTLDEVEQHLRY-VDGVMLGREAYHNP-YVLAGIDARFYGASAPAPTREEVEAKLVEYCA 271
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 272 AELARGTY 279
>gi|390437556|ref|ZP_10226094.1| tRNA-dihydrouridine synthase A [Pantoea agglomerans IG1]
Length = 330
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 125/244 (51%), Gaps = 11/244 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V +A+ + ++PV+VK RIG+D+ DSY L D
Sbjct: 92 NVGCPSDRVQ-NGRFGACLMAEANLVADAVKAMRDVVSIPVTVKTRIGIDELDSYEFLTD 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT LNGG+
Sbjct: 151 FIGTVAGRGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTIALNGGV 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP L VD ++G +VV Y +
Sbjct: 211 KTLEEAQIHLQH-LDGVMMGREAYQNPG-ILAQVDQTLFGRQHPAANPVEVVRAMYPYIE 268
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
A L GTY + V + +L F PG ++R LE + +
Sbjct: 269 AELAKGTY------LGHVTRHMLGLFQGIPGARQWRRHLSENAHKPGADVRVLEAALALV 322
Query: 241 PDSV 244
D +
Sbjct: 323 ADKI 326
>gi|399544116|ref|YP_006557424.1| tRNA-dihydrouridine synthase A [Marinobacter sp. BSs20148]
gi|399159448|gb|AFP30011.1| tRNA-dihydrouridine synthase A [Marinobacter sp. BSs20148]
Length = 400
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 125/219 (57%), Gaps = 16/219 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS KV + G LM P V E + A T++PV+VK RIG++ +S+++LC
Sbjct: 159 NVGCPSDKVQNN-MIGACLMGHPDIVAEGFKAMQAATDIPVTVKHRIGINGRESWDELCG 217
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V++ + + FI+H+R A+L G+SP ENR +PPLKY++ Y L +P L +NGGI
Sbjct: 218 FIETVAA-AGCKTFIVHARIAVLEGLSPKENRDVPPLKYDWVYRLKARYPQLEIIINGGI 276
Query: 123 NTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
TV+E + L AH VM+GR AY NPW L VD+ +G P ++R + +E +
Sbjct: 277 KTVNECHQHL---AHSDGVMLGREAYHNPW-ILTQVDSEFFGEPEKTVSRHEALEAMYPF 332
Query: 181 GDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ L G Y + + + +L FH PG F+R
Sbjct: 333 IEQELARGVY------LGHISRHMLGLFHGIPGGRQFRR 365
>gi|421785829|ref|ZP_16222252.1| tRNA-dihydrouridine synthase [Serratia plymuthica A30]
gi|407752018|gb|EKF62178.1| tRNA-dihydrouridine synthase [Serratia plymuthica A30]
Length = 336
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 117/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGQATLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR +PPL Y Y L RDFP LT +NGG+
Sbjct: 157 FIATVAGRGECDMFTIHARKAWLSGLSPKENREVPPLDYPRVYQLKRDFPQLTLAINGGV 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L VM+GR AYQNP L VD+ ++G + + ++E Y +
Sbjct: 217 KTLGEAKQHLEH-LDGVMMGREAYQNPG-ILARVDSELFGRQTEVMDSVAIIESLYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 275 REL----SNGTYLGHITRHILGLFQGVPGARQWRR 305
>gi|444353700|ref|YP_007389844.1| tRNA dihydrouridine synthase A (EC 1.-.-.-) [Enterobacter aerogenes
EA1509E]
gi|443904530|emb|CCG32304.1| tRNA dihydrouridine synthase A (EC 1.-.-.-) [Enterobacter aerogenes
EA1509E]
Length = 354
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 115/213 (53%), Gaps = 7/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCDFI
Sbjct: 122 GCPSDRVQ-NGMFGACLMGNAALVADCIKAMRDVVSIPVTVKTRIGIDDRDSYEFLCDFI 180
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS FIIH+RKA L+G+SP ENR IPPL Y + L RDFP LT +NGGI +
Sbjct: 181 ETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQLKRDFPHLTMAINGGIKS 240
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+ E L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 241 LAEAKQQLEH-MDGVMVGREAYQNPG-ILASVDREIFGVDGADADPVAVVRAMYPYIERE 298
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 299 L----SNGTYLGHITRHMLGLFQGIPGARQWRR 327
>gi|425461819|ref|ZP_18841293.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9808]
gi|389825241|emb|CCI25123.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9808]
Length = 328
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V +S + ++PV+VK RIG+DD DSY + +
Sbjct: 89 NVGCPSSRVK-EGNFGACLMANPELVARGISAMNQAVSIPVTVKQRIGIDDQDSYENMAN 147
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ R F IH+RKA L G+SP ENRT+PPL+Y+ Y L FP L +NGGI
Sbjct: 148 FVRIVADAGCQR-FTIHARKAWLQGLSPKENRTVPPLRYDDVYRLKNQFPHLFIEINGGI 206
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ L+ VM+GRAAY NP Y VD YG + TR +V++K Y D
Sbjct: 207 INLEQARQHLQL-VDAVMIGRAAYDNP-YLFATVDRDFYGESVTPPTREEVIKKMLPYID 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + K LL F +PG +KR
Sbjct: 265 ----EWVSKGYKLHQISKHLLQLFAGQPGTKDWKR 295
>gi|308188956|ref|YP_003933087.1| tRNA-dihydrouridine synthase A [Pantoea vagans C9-1]
gi|308059466|gb|ADO11638.1| tRNA-dihydrouridine synthase A [Pantoea vagans C9-1]
Length = 330
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 125/244 (51%), Gaps = 11/244 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V +A+ + ++PV+VK RIG+D+ DSY L D
Sbjct: 92 NVGCPSDRVQ-NGRFGACLMAEANLVADAIKAMRDVVSIPVTVKTRIGIDELDSYEFLTD 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT LNGG+
Sbjct: 151 FIGTVAGRGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTIALNGGV 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP L VD ++G +VV Y +
Sbjct: 211 KTLEEAQTHLQH-LDGVMMGREAYQNPG-ILAQVDQTLFGRQHPAANPVEVVRAMYPYIE 268
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
A L GTY + V + +L F PG ++R LE + +
Sbjct: 269 AELAKGTY------LGHVTRHMLGLFQGIPGARQWRRHLSENAHKPGADVRVLEAALALV 322
Query: 241 PDSV 244
D +
Sbjct: 323 ADKI 326
>gi|433677434|ref|ZP_20509415.1| tRNA-dihydrouridine synthase A [Xanthomonas translucens pv.
translucens DSM 18974]
gi|430817439|emb|CCP39810.1| tRNA-dihydrouridine synthase A [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 339
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 128/236 (54%), Gaps = 10/236 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + ++ + ++PV+VKCR+GVD D Y
Sbjct: 104 NCGCPSDRVQA-GRFGACLMREPALVADCVATMVQAVDIPVTVKCRLGVDQDDDYEVFLA 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V++ + R F++H+R A L G+SP ENR +PPL+Y++ Y L R+ P L LNGG+
Sbjct: 163 FVDQVAA-AGCRLFVVHARNAWLQGLSPKENREVPPLRYDWAYRLKRERPQLQVVLNGGL 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
VD A L VM+GRAAY +P Y L +D A+ GA R +++ Q Y +
Sbjct: 222 ADVDTARAQL-DAVDGVMLGRAAYHDP-YVLHRLDAALTGATPR--PRAELLRALQPYVE 277
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIV 238
L + ++ + + LL FH +PG F++ + LE+ ++
Sbjct: 278 TRLA----DGVALKHIARHLLGLFHGQPGGRAFRQVLSEGAHRPGADWALLEQALL 329
>gi|381406043|ref|ZP_09930727.1| tRNA-dihydrouridine synthase A [Pantoea sp. Sc1]
gi|380739242|gb|EIC00306.1| tRNA-dihydrouridine synthase A [Pantoea sp. Sc1]
Length = 330
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 125/244 (51%), Gaps = 11/244 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V +A+ + ++PV+VK RIG+D+ DSY L D
Sbjct: 92 NVGCPSDRVQ-NGRFGACLMAEATLVADAVKAMRDVVSIPVTVKTRIGIDELDSYAFLTD 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT LNGG+
Sbjct: 151 FIGTVAGRGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTIALNGGV 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E A L VM+GR AYQNP L VD ++G +VV Y +
Sbjct: 211 KTLEEAQAHLEH-LDGVMMGREAYQNPG-ILAQVDQQLFGRQHPAANPVEVVRAMYPYIE 268
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
A L GTY + V + +L F PG ++R LE + +
Sbjct: 269 AELAKGTY------LGHVTRHMLGLFQGIPGARQWRRHLSENAHKPGADVRVLEAALALV 322
Query: 241 PDSV 244
D +
Sbjct: 323 ADKI 326
>gi|71279069|ref|YP_267111.1| tRNA-dihydrouridine synthase A [Colwellia psychrerythraea 34H]
gi|71144809|gb|AAZ25282.1| TIM-barrel protein, yjbN family [Colwellia psychrerythraea 34H]
Length = 335
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + ++ + + TN+PV+VK RIG+DD DSY L
Sbjct: 103 NVGCPSDRVQ-NGRFGACLMAEPALVAQCVNQMQSATNIPVTVKSRIGIDDLDSYEFLHT 161
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +VS + RHFIIH+RKA L G+SP +NR +PPL Y+ Y + DF DL ++NGGI
Sbjct: 162 FIEEVSK-ADCRHFIIHARKAWLTGLSPKQNRDVPPLDYDRVYQIKNDFKDLEVSINGGI 220
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T E N L+ VM+GR Y +P Y L D IY + + L+R +V++ Y D
Sbjct: 221 KTFSEANEHLQH-IDGVMIGREIYNSP-YMLADADNEIYQSDTIKLSRSEVIDLMVPYID 278
Query: 183 AILGTYG 189
+ G
Sbjct: 279 ETIANGG 285
>gi|254508997|ref|ZP_05121103.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus 16]
gi|219548101|gb|EED25120.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus 16]
Length = 315
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 121/215 (56%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMRDVVDIPVTVKTRIGIDDQDSYEFLTD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF L +NGG+
Sbjct: 138 FVSIVSEKGGCDQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFAHLNIAVNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + + L VMVGR AYQNP Y L VD I+G R QVV++ Y +
Sbjct: 198 KTLGDSLSHLEH-VDGVMVGREAYQNP-YLLAEVDQQIFGLDKPIKKRSQVVKEMYPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + ++ + + ++ F + PG ++R
Sbjct: 256 AQL----SKGAYLGHITRHMIGLFQAMPGARQWRR 286
>gi|337279450|ref|YP_004618922.1| tRNA-dihydrouridine synthase [Ramlibacter tataouinensis TTB310]
gi|334730527|gb|AEG92903.1| candidate tRNA-dihydrouridine synthase [Ramlibacter tataouinensis
TTB310]
Length = 331
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIG+D +SY+ + D
Sbjct: 97 NCGCPSERVQ-RGAFGACLMAEPRLVADCVKAMVDAVDLPVTVKHRIGIDKTESYDFVRD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + R FI+H+R A L G+SP ENR +PPL+YE + L RDFP L +NGG+
Sbjct: 156 FVGTVAE-AGCRVFIVHARNAWLQGLSPKENREVPPLRYELVHRLKRDFPGLVIAINGGV 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
D+V L+ VMVGR AY PW+ L D A GAP+ L+R V E+ Y +
Sbjct: 215 TADDQVAGQLQV-LDGVMVGRQAYHQPWW-LASWDAAFLGAPARELSRETVEEQMVGYME 272
Query: 183 AILGTYGN 190
+G
Sbjct: 273 RQAQAHGT 280
>gi|425442117|ref|ZP_18822376.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9717]
gi|389716998|emb|CCH98852.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9717]
Length = 356
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V +S + ++PV+VK RIG+DD DSY + +
Sbjct: 114 NVGCPSSRVK-EGNFGACLMANPELVARGISAMNQAVSIPVTVKQRIGIDDQDSYENMAN 172
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ R F IH+RKA L G+SP ENRT+PPL+Y+ Y L FP L +NGGI
Sbjct: 173 FVRIVADAGCQR-FTIHARKAWLQGLSPKENRTVPPLRYDDVYRLKNQFPHLFIEINGGI 231
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ L+ VM+GRAAY NP Y VD YG + T+ +V++K Y D
Sbjct: 232 INLEQARQHLQL-VDAVMIGRAAYDNP-YLFATVDRDFYGESVTPPTQEEVIKKMLPYID 289
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + K LL F +PG +KR
Sbjct: 290 ----EWVSKGYKLHQISKHLLQLFAGQPGTKAWKR 320
>gi|410619800|ref|ZP_11330691.1| tRNA-dihydrouridine synthase A [Glaciecola polaris LMG 21857]
gi|410160578|dbj|GAC34829.1| tRNA-dihydrouridine synthase A [Glaciecola polaris LMG 21857]
Length = 345
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + + + ++PV+VK RIG+DD D Y L D
Sbjct: 95 NVGCPSDRVQ-NGRFGACLMAEPSTVAKCIEAMQKEVDIPVTVKSRIGIDDMDEYKDLTD 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ S F +H+RKA L G+SP ENR IPPL Y+ YAL +FP L ++NGG+
Sbjct: 154 FISVVAD-SGCDIFTVHARKAWLKGLSPKENRDIPPLMYDRVYALKDEFPQLNISINGGV 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+ L K VM+GR Y NP Y L VD Y L+R ++V Y +
Sbjct: 213 KTLDDTAVHLEK-LDGVMIGREVYSNP-YILADVDRRFYQDDRPVLSREEIVHAMLPYVE 270
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A + G R ++ + +L F +PG +++R
Sbjct: 271 AQMA--GGARAW--NIARHMLGLFQGQPGGRIWRR 301
>gi|389798660|ref|ZP_10201673.1| tRNA dihydrouridine synthase A [Rhodanobacter sp. 116-2]
gi|388444576|gb|EIM00678.1| tRNA dihydrouridine synthase A [Rhodanobacter sp. 116-2]
Length = 328
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 126/216 (58%), Gaps = 12/216 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P V + + + +VPV+VKCRIGVDD D Y L
Sbjct: 97 NVGCPSDRVQS-GRFGACLMYEPALVADCVKAMRDAVSVPVTVKCRIGVDDQDDYAGLQQ 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F ++ + ++H+RKA L G+SP ENR +PPL YE Y L R+FP+L +NGGI
Sbjct: 156 FT-ELMLEAGVEVLVVHARKAWLKGLSPKENREVPPLDYERVYRLKREFPELVVVINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQ-VVEKYQIYG 181
+TVD+V + L + VM+GRAAY +P Y L ++ A++ P L RR+ V+++ + Y
Sbjct: 215 STVDQVRSHLAQ-LDGVMLGRAAYHDP-YLLAQLEHALHDEP---LPRREDVLQRLRPYV 269
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+A L G H+ + LL + EPG F+R
Sbjct: 270 EAELAR-GTALKHIS---RHLLGLYQGEPGARAFRR 301
>gi|78066180|ref|YP_368949.1| tRNA-dihydrouridine synthase A [Burkholderia sp. 383]
gi|77966925|gb|ABB08305.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia sp. 383]
Length = 344
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 121/217 (55%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + + + +VPV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPSLVADCVKAMRDAVSVPVTVKHRIGVDAVEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 155 FVGTVAE-AGCETFVVHARNAILKGLSPKENREIPPLKYDYAYQLKRDFPSLEIVINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L + VM+GR AY NP Y L VD YG+ + TR + K Y
Sbjct: 214 TTLDEVAQHL-EHVDGVMLGREAYHNP-YVLAEVDARFYGSTEAVPTREEAEAKLIEYCA 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L GTY + +++ L + PG ++R
Sbjct: 272 AELKRGTY------LGAIVRHALGLYRGMPGARGWRR 302
>gi|290476894|ref|YP_003469805.1| tRNA-dihydrouridine synthase A [Xenorhabdus bovienii SS-2004]
gi|289176238|emb|CBJ83043.1| tRNA-dihydrouridine synthase A [Xenorhabdus bovienii SS-2004]
Length = 345
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + K V + + + ++PV+VK RIG+D+ DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGRFGACLMGEAKLVADGIKAMQDVVDIPVTVKTRIGIDEQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V S +FIIH+RKA L+G+SP ENR IPPL Y Y L +DFP LT ++NGGI
Sbjct: 170 FIDTVVKNSDCDNFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKKDFPQLTLSINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQNP L HVD ++ + + ++ Y +
Sbjct: 230 KSLEEAKQHLQY-VDGVMIGREAYQNP-SILAHVDRELFNETALVVNTINAIKALYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 RELSKGTY------LGHITRHILGIFQGIPGARQWRR 318
>gi|421480048|ref|ZP_15927700.1| tRNA dihydrouridine synthase A [Burkholderia multivorans CF2]
gi|400221841|gb|EJO52267.1| tRNA dihydrouridine synthase A [Burkholderia multivorans CF2]
Length = 328
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 121/217 (55%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSVPVTVKHRIGVDAVEDYAFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 139 FVGTVAQAGCST-FIVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPSLEIVINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L VM+GR AY NP Y L VD YG+ + TR + + Y
Sbjct: 198 KTLDEVAQHLEH-VDGVMLGREAYHNP-YVLADVDARFYGSTDAAPTREEAEARLIEYCA 255
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L GTY + +++ L + PG ++R
Sbjct: 256 AELKRGTY------LGAIVRHALGLYRGVPGARGWRR 286
>gi|428776577|ref|YP_007168364.1| tRNA-U16,U17-dihydrouridine synthase [Halothece sp. PCC 7418]
gi|428690856|gb|AFZ44150.1| tRNA-U16,U17-dihydrouridine synthase [Halothece sp. PCC 7418]
Length = 344
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 117/215 (54%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V + + +PV+VK RIG+D+ D Y + +
Sbjct: 111 NVGCPSDRVKS-GNFGACLMAQPETVATVVEAMQNAVEIPVTVKHRIGIDERDRYEDMSE 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS R F +H+RKA L G+SP ENR +PPL+YE Y L ++FP L +NGGI
Sbjct: 170 FVRVVSEAGCQR-FTVHARKAWLQGLSPKENRNVPPLRYEDVYRLKQEFPQLFIEINGGI 228
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E+ L VM+GRAAY NP Y VD IYG T ++VVE Y
Sbjct: 229 KTLPEIKEHLNH-LDAVMIGRAAYDNP-YLFATVDQEIYGQDDPPPTMKEVVEAMLPY-- 284
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + N + + + L+H F+ +PG ++R
Sbjct: 285 --LDYWVNRGLKLNSMTRHLIHIFNGQPGAKAWRR 317
>gi|398796281|ref|ZP_10555894.1| tRNA dihydrouridine synthase A [Pantoea sp. YR343]
gi|398203746|gb|EJM90563.1| tRNA dihydrouridine synthase A [Pantoea sp. YR343]
Length = 332
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM D V + + + ++PV+VK RIG+D+ DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMGDAALVADCIKAMRDVVSIPVTVKTRIGIDEQDSYEFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 152 FIGTVAQQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPALTMAINGGI 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP L VD ++G + + VV Y +
Sbjct: 212 KTLEEAKLHLQH-MDGVMMGREAYQNPG-ILAQVDRELFGRDTPRVDPVAVVRSMYPYIE 269
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + ++ V + +L F PG ++R
Sbjct: 270 AEL----SKGMYLGHVTRHMLGLFQGIPGARQWRR 300
>gi|221481338|gb|EEE19732.1| dihydrouridine synthase domain-containing protein, putative
[Toxoplasma gondii GT1]
gi|221502060|gb|EEE27806.1| dihydrouridine synthase domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 394
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 146/280 (52%), Gaps = 41/280 (14%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V GCFG +LM P+ V + + I + +PV+VK RIG D DS + L +F+
Sbjct: 103 GCPSNRVVSQGCFGAALMKTPETVRDIVHEIRRHVQIPVTVKTRIGYDHCDSRDVLRNFV 162
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS+ RHFIIH+RKA L G+ P +NR++PPL Y Y L FP L F+LNGG+ +
Sbjct: 163 QTVSA-GGCRHFIIHARKAWLKGVDPKKNRSVPPLLYGRVYDLCDQFPHLDFSLNGGVRS 221
Query: 125 VD---------------EVNAALR--------KGAHHVMVGRAAYQNPWYTLGHVDTAIY 161
+ E++A LR K VM+GRAA +P L +VDT Y
Sbjct: 222 IQQAIDLAAGKWTDGTAEMDALLRRITRDKTVKPLRGVMLGRAASADP-CILANVDTDFY 280
Query: 162 GA---PSSGLTRRQVVEKYQIYGD--AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 216
GA P + +RR V+E Y+ Y A G Y + ++KP+L F+ PGN LF+
Sbjct: 281 GADANPPTSHSRRTVLEAYRNYIKPFAEDGEYSHFA-----LLKPVLGVFNGMPGNRLFR 335
Query: 217 RKADAAFQ---TCKTVKSFLEETIVAIPDS---VLDSPIE 250
D + T + L T+ A+ ++ VL+ P+
Sbjct: 336 FTLDHLMRDQSRVWTAEEILAHTMAAVDETFPGVLEYPLR 375
>gi|149376568|ref|ZP_01894328.1| tRNA-dihydrouridine synthase A [Marinobacter algicola DG893]
gi|149359086|gb|EDM47550.1| tRNA-dihydrouridine synthase A [Marinobacter algicola DG893]
Length = 320
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 126/242 (52%), Gaps = 12/242 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P V E + + A T++PV+VK RIG+D +S++ LC+
Sbjct: 80 NVGCPSDRVQNN-MIGACLMAHPDKVAEGVQAMIAATSLPVTVKHRIGIDGRESWDDLCE 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KVS + R FI+H+R A+L G+SP ENR IPPLKY++ Y L +P L +NGGI
Sbjct: 139 FIEKVSE-AGCRTFIVHARIAVLEGLSPKENRDIPPLKYDWVYRLKARYPHLEIIINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQ--IY 180
T E L VM+GR AY NPW G VDT +G P +R + I
Sbjct: 198 KTFAECREHLEH-TDGVMLGREAYHNPWLLAG-VDTEFFGRPMPISSRHDALRAVLPFIQ 255
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
+ G Y + + + L+ FH +PG F+R + +E+ + +
Sbjct: 256 SELDRGVY------LSHISRHLMGLFHGQPGGRQFRRYISENAHKPGSGIEVIEQAMAKV 309
Query: 241 PD 242
P+
Sbjct: 310 PE 311
>gi|83952336|ref|ZP_00961067.1| tRNA-dihydrouridine synthase A [Roseovarius nubinhibens ISM]
gi|83836009|gb|EAP75307.1| tRNA-dihydrouridine synthase A [Roseovarius nubinhibens ISM]
Length = 343
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 121/241 (50%), Gaps = 7/241 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM DP V + + + A T+V V+VKCRIGVDD D L +
Sbjct: 106 NCGCPSDRVQS-GTFGAVLMTDPGRVADCCAAMIAATDVEVTVKCRIGVDDQDPEEVLPE 164
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V + R F IH+RKA L G+SP ENR IPPL Y+ ++ FP L ++NGGI
Sbjct: 165 FLARVGAAGVGR-FTIHARKAWLKGLSPKENRDIPPLDYDLARRMIGLFPSLHLSINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D L +G VM+GRAAY P L D I+G T V+ Y +
Sbjct: 224 ATLDHAVELLDQGFDGVMLGRAAYHQPADILCAADRRIFGHDGPDSTAEDAVQAMLPYIE 283
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI-P 241
A L G + + + +L F PG ++R +EE + I P
Sbjct: 284 AHLAAGGR----LNQITRHMLGLFAGRPGARAWRRMLSEGASRPGAGPELVEEALTQIAP 339
Query: 242 D 242
D
Sbjct: 340 D 340
>gi|156932320|ref|YP_001436236.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii ATCC BAA-894]
gi|156530574|gb|ABU75400.1| hypothetical protein ESA_00095 [Cronobacter sakazakii ATCC BAA-894]
Length = 313
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 119/217 (54%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMGEAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ FIIH+RKA L+G+SP ENR IPPL Y + L RDFP LT ++NGGI
Sbjct: 138 FVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVHQLKRDFPKLTMSINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+V L VMVGR AYQNP L VD I+G VV Y +
Sbjct: 198 KTLDDVKTHLEH-MDGVMVGREAYQNPG-ILASVDREIFGLDVPDADPVAVVRAMYPYIE 255
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + V + +L F PG ++R
Sbjct: 256 RELAKGTYLGH------VTRHMLGLFQGIPGARQWRR 286
>gi|99080805|ref|YP_612959.1| tRNA-dihydrouridine synthase A [Ruegeria sp. TM1040]
gi|99037085|gb|ABF63697.1| TIM-barrel protein yjbN family [Ruegeria sp. TM1040]
Length = 336
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 124/235 (52%), Gaps = 7/235 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P+ V + ++ +A +V V+VKCRIGVDD L D
Sbjct: 101 NCGCPSDRVQS-GAFGAVLMQTPELVADCVAAMAEAVSVEVTVKCRIGVDDQTPDEILPD 159
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K+ + + + IH+RKA L G+SP ENR IPPL YE +A+ F D+ +LNGGI
Sbjct: 160 FLDKIRA-AGVKRVTIHARKAWLQGLSPKENRDIPPLDYELVHAMKSAFADMHISLNGGI 218
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++DE A L +G VMVGRAAY P L D IYG ++ +VV + Y +
Sbjct: 219 TSLDEAQAQLARGLDGVMVGRAAYHQPADVLCAADPRIYGTGTAS-DPLEVVRQMLPYIE 277
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETI 237
+ + +R H + + +L F PG ++R +EE +
Sbjct: 278 QQMQS--GSRLH--QITRHMLGLFAGRPGARQWRRHLSEGAHRTGAGPELVEEAL 328
>gi|378581909|ref|ZP_09830549.1| tRNA-dihydrouridine synthase A [Pantoea stewartii subsp. stewartii
DC283]
gi|377815224|gb|EHT98339.1| tRNA-dihydrouridine synthase A [Pantoea stewartii subsp. stewartii
DC283]
Length = 331
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 124/244 (50%), Gaps = 11/244 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+D+ DSY L D
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMAEAGLVADGIKAMRDVVDIPVTVKTRIGIDEQDSYAFLTD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+
Sbjct: 152 FIGTVAERGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTIAINGGV 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP L HVD ++G VV Y +
Sbjct: 212 KTLEEAKTHLQH-LDGVMMGREAYQNPG-ILAHVDREVFGREQPAADPVAVVRAMYPYIE 269
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
A L GTY + V + +L F PG ++R LE + +
Sbjct: 270 AELAKGTYLGH------VTRHMLGLFQGIPGARQWRRHLSENAHKPGADVRVLEAALALV 323
Query: 241 PDSV 244
D +
Sbjct: 324 ADKI 327
>gi|444365932|ref|ZP_21166033.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia
K56-2Valvano]
gi|443605311|gb|ELT73169.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia
K56-2Valvano]
Length = 328
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 121/217 (55%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + VPV+VK RIGVD + Y + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVAVPVTVKHRIGVDAVEDYAFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 139 FVGTVAE-AGCETFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPSLEIVINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L VM+GR AY NP Y L VD YG+ ++ TR + + Y
Sbjct: 198 TTLDEVAQHLEH-VDGVMLGREAYHNP-YVLAEVDARFYGSTAAVPTREEAEAQLIAYCA 255
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L GTY + +++ L + PG ++R
Sbjct: 256 AELKRGTY------LGAIVRHALGLYRGMPGARGWRR 286
>gi|170698688|ref|ZP_02889754.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria IOP40-10]
gi|170136392|gb|EDT04654.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria IOP40-10]
Length = 328
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 109/183 (59%), Gaps = 4/183 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSVPVTVKHRIGVDAVEDYAFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KV+ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 139 FVGKVAE-AGCETFVVHARNAILKGLSPKENREIPPLKYDYAYQLKRDFPSLEIVINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L VM+GR AY NP Y L VD YG+ ++ TR + K Y
Sbjct: 198 KTLDEVAQHLEH-VDGVMLGREAYHNP-YVLAGVDARFYGSTAAVPTREEAEAKLIEYCA 255
Query: 183 AIL 185
A L
Sbjct: 256 AEL 258
>gi|372275615|ref|ZP_09511651.1| tRNA-dihydrouridine synthase A [Pantoea sp. SL1_M5]
Length = 330
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 125/244 (51%), Gaps = 11/244 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V +A+ + ++PV+VK RIG+D+ DSY L D
Sbjct: 92 NVGCPSDRVQ-NGRFGACLMAEANLVADAVKAMRDVVSIPVTVKTRIGIDELDSYEFLTD 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT LNGG+
Sbjct: 151 FIGTVAGRGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTIALNGGV 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP L VD ++G +VV Y +
Sbjct: 211 KTLEEALTHLQH-LDGVMMGREAYQNPG-ILAQVDQTLFGRQHPAANPVEVVRAMYPYIE 268
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
A L GTY + V + +L F PG ++R LE + +
Sbjct: 269 AELAKGTY------LGHVTRHMLGLFQGIPGARQWRRHLSENAHKPGADVRVLEAALALV 322
Query: 241 PDSV 244
D +
Sbjct: 323 ADKI 326
>gi|444358841|ref|ZP_21160214.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia BC7]
gi|443603248|gb|ELT71271.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia BC7]
Length = 344
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 122/217 (56%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + VPV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVAVPVTVKHRIGVDAVEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 155 FVGTVAE-AGCETFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPSLEIVINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L + VM+GR AY NP Y L VD YG+ ++ TR + + Y
Sbjct: 214 TTLDEVAQHL-EHVDGVMLGREAYHNP-YVLAEVDARFYGSTAAVPTREEAEAQLIAYCA 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L GTY + +++ L + PG ++R
Sbjct: 272 AELKRGTY------LGAIVRHALGLYRGMPGARGWRR 302
>gi|423118069|ref|ZP_17105753.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5246]
gi|376402402|gb|EHT14996.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5246]
Length = 332
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 118/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 157 FINTVSGNGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMAINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VMVGR AYQNP L VD I+ + VV Y +
Sbjct: 217 KSLEEAKLHLQH-MDGVMVGREAYQNPG-ILTAVDREIFAVDGADSDPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 275 REL----SNGTYLGHITRHMLGLFQGIPGARQWRR 305
>gi|317493445|ref|ZP_07951866.1| tRNA dihydrouridine synthase A [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918388|gb|EFV39726.1| tRNA dihydrouridine synthase A [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 337
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 120/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 102 NVGCPSDRVQ-NGRFGACLMGEAQLVADGIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 160
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS F +H+RKA L+G+SP ENR IPPL YE Y L RDFP L +NGG+
Sbjct: 161 FIDIVSGKGECNSFTVHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLNIAINGGV 220
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQ+P L HVD ++ + + VV Y +
Sbjct: 221 KTLEEAKIHLQH-LDGVMMGREAYQSP-SILAHVDRELFDSTADVPNSIDVVRSLYPYIE 278
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F S PG ++R
Sbjct: 279 REL----SNGTYLGHITRHILGLFQSIPGARQWRR 309
>gi|317046530|ref|YP_004114178.1| yjbN family TIM-barrel protein [Pantoea sp. At-9b]
gi|316948147|gb|ADU67622.1| TIM-barrel protein, yjbN family [Pantoea sp. At-9b]
Length = 331
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 119/217 (54%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMGEAALVADCIKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 152 FVGTVAQQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTMAINGGI 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E L+ VM+GR AYQNP L VD ++G + + VV Y +
Sbjct: 212 KSLAEAKVHLQH-MDGVMMGREAYQNPG-ILAQVDRELFGRDTPAVDPVAVVRSMYPYIE 269
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L GTY + V + +L F PG ++R
Sbjct: 270 AELAKGTYLGH------VTRHMLGLFQGIPGARQWRR 300
>gi|241766211|ref|ZP_04764111.1| TIM-barrel protein, yjbN family [Acidovorax delafieldii 2AN]
gi|241363710|gb|EER59087.1| TIM-barrel protein, yjbN family [Acidovorax delafieldii 2AN]
Length = 313
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 103/171 (60%), Gaps = 4/171 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +PV+VK RIG+D +SY + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMVDVVQIPVTVKHRIGIDKDESYGFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V++ + FI+H+R A L G+SP ENR +PPL+Y + L RDFP LT +NGGI
Sbjct: 139 FIGTVAA-AGCEVFIVHARNAWLKGLSPKENREVPPLRYAVVHQLKRDFPHLTIAINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQV 173
T D V+ L VMVGR AY NPW+ L D YGAP S LTR V
Sbjct: 198 QTDDVVHEQLGH-LDGVMVGREAYHNPWW-LARWDALYYGAPESSLTRDDV 246
>gi|53804232|ref|YP_114112.1| tRNA-dihydrouridine synthase A [Methylococcus capsulatus str. Bath]
gi|53757993|gb|AAU92284.1| TIM-barrel protein, yjbN family [Methylococcus capsulatus str.
Bath]
Length = 360
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 119/214 (55%), Gaps = 9/214 (4%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPSP+V G FG LM +P+ V + + + +VPV+VK RIG+DD DSY L F+
Sbjct: 116 GCPSPRVQT-GRFGACLMAEPERVADCVRAMCEAVSVPVTVKTRIGIDDRDSYEDLLHFV 174
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ + R FI+H+RKA L G+SP ENR PPL+Y+ L + P+L LNGGI T
Sbjct: 175 TIVAE-AGCRTFIVHARKAWLQGLSPKENRQTPPLRYDVVRRLKSELPELAIVLNGGIQT 233
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG-APSSGLTRRQVVEKYQIYGDA 183
+DE L VM+GRAAY NP Y L D YG + TR +V+E + Y
Sbjct: 234 LDEAERHL-SWCDGVMIGRAAYHNP-YLLAEADRRCYGHSDVRPRTREEVIEDFMPYVRN 291
Query: 184 ILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +R H + + +L +H+ PG ++R
Sbjct: 292 ELSK--GSRLHA--LTRHILGLYHATPGGKRWRR 321
>gi|407939138|ref|YP_006854779.1| tRNA-dihydrouridine synthase A [Acidovorax sp. KKS102]
gi|407896932|gb|AFU46141.1| tRNA-dihydrouridine synthase A [Acidovorax sp. KKS102]
Length = 328
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 117/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG SLM P+ V + + + +VPV+VK RIG+D + Y + D
Sbjct: 80 NCGCPSDRVQ-RGAFGASLMKAPQLVADGIKAMKDVVSVPVTVKHRIGIDKVEDYGFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ T FI+H+R A L G+SP ENR IPPL+YE + L +FP T +NGGI
Sbjct: 139 FVGTVAEAGCTV-FIVHARNAWLQGLSPKENRDIPPLRYEVVHRLKAEFPQFTIAINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T D V L+ VM+GR AY NPW+ L D YG LTR +V Y +
Sbjct: 198 TTDDVVQEQLQH-LDGVMIGREAYHNPWW-LARWDQLYYGGAPCPLTREEVELAMVEYME 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+G PH + + +L HS PG ++++
Sbjct: 256 REAAQHGTPWPH---IARHMLGLRHSLPGARIWRQ 287
>gi|351728741|ref|ZP_08946432.1| tRNA-dihydrouridine synthase A [Acidovorax radicis N35]
Length = 328
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 119/218 (54%), Gaps = 13/218 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG SLM P+ V + + + +VPV+VK RIG+D + Y + D
Sbjct: 80 NCGCPSDRVQ-RGAFGASLMKSPQLVADCVKAMKDVVDVPVTVKHRIGIDKVEDYGFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ T FI+H+R A L G+SP ENR IPPL+YE + L +FP T +NGGI
Sbjct: 139 FIGTVADAGCTV-FIVHARNAWLQGLSPKENRDIPPLRYEVVHQLKAEFPQFTIAINGGI 197
Query: 123 NTVDEVNAALRKGAHH---VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQI 179
T +A +++ H VM+GR AY NPW+ L D YG LTR +V
Sbjct: 198 AT----DAVVQEQLEHLDGVMIGREAYHNPWW-LARWDQLYYGGAPCPLTREEVELAMVE 252
Query: 180 YGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
Y + YG PH + + +L HS PG ++++
Sbjct: 253 YMEREAAQYGTPWPH---IARHMLGLRHSLPGARIWRQ 287
>gi|440761201|ref|ZP_20940293.1| tRNA dihydrouridine synthase A [Pantoea agglomerans 299R]
gi|436425131|gb|ELP22876.1| tRNA dihydrouridine synthase A [Pantoea agglomerans 299R]
Length = 330
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 124/244 (50%), Gaps = 11/244 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V +A+ + ++PV+VK RIG+D+ DSY L D
Sbjct: 92 NVGCPSDRVQ-NGRFGACLMAEANLVADAIKAMRDVVSIPVTVKTRIGIDELDSYEFLTD 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT LNGG+
Sbjct: 151 FIGTVAGRGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTIALNGGV 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP L VD ++G VV Y +
Sbjct: 211 KTLEEAQTHLQH-LDGVMMGREAYQNPG-ILAQVDQTLFGRQHPAANPVDVVRAMYPYIE 268
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
A L GTY + V + +L F PG ++R LE + +
Sbjct: 269 AELAKGTY------LGHVTRHMLGLFQGIPGARQWRRHLSENAHKPGADVRVLEAALALV 322
Query: 241 PDSV 244
D +
Sbjct: 323 ADKI 326
>gi|359439600|ref|ZP_09229545.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20311]
gi|359445015|ref|ZP_09234774.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20439]
gi|358025710|dbj|GAA65794.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20311]
gi|358041144|dbj|GAA71023.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20439]
Length = 324
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 129/240 (53%), Gaps = 8/240 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + + N+PV+VK RIG+D+ DSY LC
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMAEPNLVAECVAAMKSEVNIPVTVKTRIGIDEQDSYEFLCA 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
I + S FIIH+RKA L G+SP ENR +P L Y Y L +D+P L ++NGG+
Sbjct: 152 LI-EASHKVGCDDFIIHARKAWLKGLSPKENREVPELNYPRVYQLKKDYPQLDLSINGGV 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VMVGR AY NP + L VD IYG ++ +R VV Y +
Sbjct: 211 KTIEQSLEHLQY-IDGVMVGREAYSNP-FMLNEVDEKIYGDAANTQSRHDVVRSMYDYIE 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ G N H V + +L F +PG F+R + S +++ + +P+
Sbjct: 269 EEM-RLGANFWH---VARHMLGIFQGQPGARGFRRHLSENGHGKQADLSVMDKALSYVPE 324
>gi|304398443|ref|ZP_07380316.1| TIM-barrel protein, yjbN family [Pantoea sp. aB]
gi|304353948|gb|EFM18322.1| TIM-barrel protein, yjbN family [Pantoea sp. aB]
Length = 330
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 124/244 (50%), Gaps = 11/244 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V +A+ + ++PV+VK RIG+D+ DSY L D
Sbjct: 92 NVGCPSDRVQ-NGRFGACLMAEANLVADAIKAMRDVVSIPVTVKTRIGIDELDSYEFLTD 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT LNGG+
Sbjct: 151 FIGTVAGRGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTIALNGGV 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP L VD ++G VV Y +
Sbjct: 211 KTLEEAKTHLQH-LDGVMMGREAYQNPG-ILAQVDQTLFGRQHPAANPVDVVRAMYPYIE 268
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
A L GTY + V + +L F PG ++R LE + +
Sbjct: 269 AELAKGTY------LGHVTRHMLGLFQGIPGARQWRRHLSENAHKPGADVRVLEAALALV 322
Query: 241 PDSV 244
D +
Sbjct: 323 ADKI 326
>gi|333374810|ref|ZP_08466644.1| tRNA dihydrouridine synthase A [Kingella kingae ATCC 23330]
gi|332974563|gb|EGK11483.1| tRNA dihydrouridine synthase A [Kingella kingae ATCC 23330]
Length = 357
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 119/216 (55%), Gaps = 6/216 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-ANTNVPVSVKCRIGVDDHDSYNQLC 61
+CGCPSP+V G FG LMLD V + ++ + A +P+++K RIG+D Y L
Sbjct: 113 NCGCPSPRVQ-KGAFGACLMLDVNLVADCLNAMQDAVPAIPITIKHRIGIDKQTEYQPLA 171
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
DF+ + + R FI+H+R A L+G+SP ENR IPPL+Y++ Y L ++FPDL +NGG
Sbjct: 172 DFVGSLHDKTACRTFIVHARNAWLDGLSPKENREIPPLRYDFVYRLKQEFPDLEIIINGG 231
Query: 122 INTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYG 181
+ T ++ L+ VM+GR AY NP Y + DT YG TR Q+ + Q+Y
Sbjct: 232 VQTNTQIAEHLQH-VDGVMMGREAYHNP-YIMHDWDTLFYGETQPAPTREQITQ--QLYN 287
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A +R +++ L H G +++R
Sbjct: 288 YATQQLSRQQGTILRHMVRHYLGLTHGLNGAKIWRR 323
>gi|330816761|ref|YP_004360466.1| Dihydrouridine synthase [Burkholderia gladioli BSR3]
gi|327369154|gb|AEA60510.1| Dihydrouridine synthase [Burkholderia gladioli BSR3]
Length = 345
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 107/178 (60%), Gaps = 4/178 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + + + ++PV+VK RIGVD + Y + D
Sbjct: 99 NCGCPSERVQ-RGAFGACLMNEPALVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L +DFPDL +NGGI
Sbjct: 158 FVGTVAE-AGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYRLKQDFPDLEILINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+DEV L+ VM+GR AY NP + L VD YGA TR ++ ++ Y
Sbjct: 217 TTLDEVETHLQH-VDGVMLGREAYHNP-FVLAEVDARFYGAARPAPTREEIEDRLIAY 272
>gi|319941968|ref|ZP_08016289.1| TRNA-dihydrouridine synthase A [Sutterella wadsworthensis 3_1_45B]
gi|319804621|gb|EFW01491.1| TRNA-dihydrouridine synthase A [Sutterella wadsworthensis 3_1_45B]
Length = 347
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 101/177 (57%), Gaps = 8/177 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSP+V G FG LMLD K V E + + T+ PV+VK RIGVD+ Y + D
Sbjct: 106 NCGCPSPRVQ-KGSFGACLMLDAKLVAECVRAMRDATDKPVTVKHRIGVDERSDYGFVRD 164
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V + R FI+H+R A L G+SP ENR +PPL + L RDFPD LNG +
Sbjct: 165 FVGEVYD-AGCRTFIVHARAAWLQGLSPKENREVPPLMRSRAWELKRDFPDAVIVLNGAV 223
Query: 123 NTVDEVNAALRK-----GAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVV 174
T E A L + VMVGRAAYQ PW L VD+ +YG LTR V+
Sbjct: 224 KTTAECRALLDEVHDGVRIDGVMVGRAAYQTPW-MLSEVDSVLYGESCRTLTREAVI 279
>gi|237838939|ref|XP_002368767.1| dihydrouridine synthase domain-containing protein [Toxoplasma
gondii ME49]
gi|211966431|gb|EEB01627.1| dihydrouridine synthase domain-containing protein [Toxoplasma
gondii ME49]
Length = 394
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 146/280 (52%), Gaps = 41/280 (14%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V GCFG +LM P+ V + + I + +PV+VK RIG D DS + L +F+
Sbjct: 103 GCPSNRVVSQGCFGAALMKTPETVRDIVHEIRRHVQIPVTVKTRIGYDHCDSRDVLRNFV 162
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS+ RHFI+H+RKA L G+ P +NR++PPL Y Y L FP L F+LNGG+ +
Sbjct: 163 QTVSA-GGCRHFIVHARKAWLKGVDPKKNRSVPPLLYGRVYDLCDQFPHLDFSLNGGVRS 221
Query: 125 VD---------------EVNAALR--------KGAHHVMVGRAAYQNPWYTLGHVDTAIY 161
+ E++A LR K VM+GRAA +P L +VDT Y
Sbjct: 222 IQQAIDLAAGKWTDGTAEMDALLRRITRDKTVKPLRGVMLGRAASADP-CILANVDTDFY 280
Query: 162 GA---PSSGLTRRQVVEKYQIYGD--AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 216
GA P + +RR V+E Y+ Y A G Y + ++KP+L F+ PGN LF+
Sbjct: 281 GADANPPTSHSRRTVLEAYRNYIKPFAEDGEYSHFA-----LLKPVLGVFNGMPGNRLFR 335
Query: 217 RKADAAFQ---TCKTVKSFLEETIVAIPDS---VLDSPIE 250
D + T + L T+ A+ ++ VL+ P+
Sbjct: 336 FTLDHLMRDQSRVWTAEEILAHTMAAVDETFPGVLEYPLR 375
>gi|350421252|ref|XP_003492785.1| PREDICTED: miniconductance mechanosensitive channel-like [Bombus
impatiens]
Length = 769
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 124/215 (57%), Gaps = 9/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V +++ + ++PV+VK RIG+D+ DSY LC
Sbjct: 539 NVGCPSDRVQ-NGMFGACLMANAELVARSIAAMREVVDIPVTVKTRIGIDNEDSYEFLCQ 597
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V L T+ F+IH+RKA L+G+SP ENR IPPL Y Y + +D+P LT +NGGI
Sbjct: 598 FIETV--LPYTQTFVIHARKAWLSGLSPKENRDIPPLDYPRVYQIKKDYPQLTVAINGGI 655
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L VMVGR AYQNP + + +D I+GA +S + + + Y +
Sbjct: 656 KTIEEIKTHLNY-VDGVMVGREAYQNP-FLVTQIDQHIFGANTSIIDPVAAIRQLYPYIE 713
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L T G H +M+ L F+ G ++R
Sbjct: 714 QEL-TQGTQLNH---IMRHTLGLFNGRKGAKQWRR 744
>gi|206559989|ref|YP_002230753.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia J2315]
gi|198036030|emb|CAR51923.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia J2315]
Length = 353
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 121/217 (55%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + VPV+VK RIGVD + Y + D
Sbjct: 105 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVAVPVTVKHRIGVDAVEDYAFVRD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 164 FVGTVAE-AGCETFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPSLEIVINGGI 222
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L VM+GR AY NP Y L VD YG+ ++ TR + + Y
Sbjct: 223 TTLDEVAQHLEH-VDGVMLGREAYHNP-YVLAEVDARFYGSTAAVPTREEAEAQLIAYCA 280
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L GTY + +++ L + PG ++R
Sbjct: 281 AELKRGTY------LGAIVRHALGLYRGMPGARGWRR 311
>gi|16329480|ref|NP_440208.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803]
gi|383321221|ref|YP_005382074.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383324391|ref|YP_005385244.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383490275|ref|YP_005407951.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384435541|ref|YP_005650265.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803]
gi|451813639|ref|YP_007450091.1| hypothetical protein MYO_13150 [Synechocystis sp. PCC 6803]
gi|2829606|sp|P72872.1|DUS2_SYNY3 RecName: Full=Probable tRNA-dihydrouridine synthase 2
gi|1651962|dbj|BAA16888.1| sll0926 [Synechocystis sp. PCC 6803]
gi|339272573|dbj|BAK49060.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803]
gi|359270540|dbj|BAL28059.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359273711|dbj|BAL31229.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359276881|dbj|BAL34398.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407957359|dbj|BAM50599.1| tRNA-dihydrouridine synthase A [Bacillus subtilis BEST7613]
gi|451779608|gb|AGF50577.1| hypothetical protein MYO_13150 [Synechocystis sp. PCC 6803]
Length = 334
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 120/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P V + +S + +PV+VK RIG+D DSY L
Sbjct: 97 NVGCPSDRVQS-GNFGACLMAQPDLVAQCVSAMQKAVEIPVTVKHRIGIDHRDSYEDLVH 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ R F +H+RKA L G+SP ENRTIPPL+YE Y L +DFP L +NGGI
Sbjct: 156 FVEIVANAGCQR-FTVHARKAWLQGLSPKENRTIPPLRYEDVYQLKKDFPQLLIEINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ L VMVGRAAY+NP Y VD IY + +R +++E+ Y +
Sbjct: 215 TQTEQIQQHL-SHVDAVMVGRAAYENP-YLFATVDRDIYHKTNLVPSRAEIIERMLPYVE 272
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +G+ + + + LL F+ +P ++R
Sbjct: 273 ERL-RHGDR---LNQITRHLLSLFNGQPRAKFWRR 303
>gi|393778283|ref|ZP_10366562.1| tRNA-dihydrouridine synthase A [Ralstonia sp. PBA]
gi|392714749|gb|EIZ02344.1| tRNA-dihydrouridine synthase A [Ralstonia sp. PBA]
Length = 362
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 121/216 (56%), Gaps = 8/216 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + + + ++PV+VK RIG+D + Y + D
Sbjct: 122 NCGCPSERVQ-RGAFGACLMAEPALVADGVRAMRDAVSIPVTVKHRIGIDAVEEYAFVRD 180
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+R A+L G+SP ENR IPPLKYE Y L RDFPDL +NGGI
Sbjct: 181 FVGTVAQ-AGCNVFIVHARNAILKGLSPKENREIPPLKYEVAYQLKRDFPDLEIVINGGI 239
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+T++ ++A LR VM+GR AY NP Y L D YGA TR V ++ Y
Sbjct: 240 DTLEAMDAHLRH-VDGVMIGREAYHNP-YFLAAFDERFYGAAEPLPTRETVEDRMLDYLA 297
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK 218
+G+ G H V + +L + G ++R+
Sbjct: 298 RWVGSGG----HAAAVTRHMLGLYRGVGGARGWRRE 329
>gi|381400469|ref|ZP_09925434.1| tRNA-dihydrouridine synthase A [Kingella kingae PYKK081]
gi|380834514|gb|EIC14354.1| tRNA-dihydrouridine synthase A [Kingella kingae PYKK081]
Length = 357
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 120/216 (55%), Gaps = 6/216 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-ANTNVPVSVKCRIGVDDHDSYNQLC 61
+CGCPSP+V G FG LMLD V + ++ + A +P+++K RIG+D Y L
Sbjct: 113 NCGCPSPRVQ-KGAFGACLMLDVNLVADCLNAMQDAVPAIPITIKHRIGIDKQTEYQPLA 171
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
DF+ + + + R FI+H+R A L+G+SP ENR IPPL+Y++ Y L ++FPDL +NGG
Sbjct: 172 DFVGSLHNKTACRTFIVHARNAWLDGLSPKENREIPPLRYDFVYHLKQEFPDLEIIINGG 231
Query: 122 INTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYG 181
+ T ++ L+ VM+GR AY NP Y + DT YG TR Q+ + Q+Y
Sbjct: 232 VQTNTQIAEHLQH-VDGVMMGREAYHNP-YIMHDWDTLFYGEKQPAPTREQIAQ--QLYN 287
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A +R +++ L H G +++R
Sbjct: 288 YATQQLSRQQGTILRHMVRHYLGLTHGLNGAKIWRR 323
>gi|429093448|ref|ZP_19156041.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 1210]
gi|426741682|emb|CCJ82154.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 1210]
Length = 331
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 126/240 (52%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+D+ DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGRFGACLMGEAQLVADCIKAMRDVVSIPVTVKTRIGIDEQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FVGTAAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLRRDFPQLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E A L VMVGR AYQNP L VD I+G + VV Y +
Sbjct: 216 KTLEEAKAHLEH-MDGVMVGREAYQNPGL-LASVDRDIFGLNTPDADPVAVVRAMYPYIE 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L ++ ++ + + +L F PG ++R S LE+ + + D
Sbjct: 274 REL----SDGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKPGADVSVLEQALKLVAD 329
>gi|260575169|ref|ZP_05843170.1| TIM-barrel protein, yjbN family [Rhodobacter sp. SW2]
gi|259022791|gb|EEW26086.1| TIM-barrel protein, yjbN family [Rhodobacter sp. SW2]
Length = 325
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 118/215 (54%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LML P V ++ + + VPV+VKCRIGVDD + L
Sbjct: 93 NVGCPSDRVQS-GAFGAVLMLQPALVAACVAAMQDASPVPVTVKCRIGVDDQVPEDVLPA 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + + H IIH+RKA L G+SP ENR IPPL Y + R+FPDLT ++NGG+
Sbjct: 152 FLEMLRGVG-VGHVIIHARKAWLQGLSPKENREIPPLDYPLVLRMKREFPDLTISINGGV 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+ L +G VM+GRAAY +P TL DT ++G P G V+E Q Y
Sbjct: 211 ATLDQARGLLAQGLDGVMIGRAAYHDPGATLIGADT-LWGDP-PGRDAFGVIEAMQPYIA 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L G + + + +L F PG ++R
Sbjct: 269 AHLAQGGK----LHQITRHMLGLFAGRPGARGWRR 299
>gi|261822868|ref|YP_003260974.1| tRNA-dihydrouridine synthase A [Pectobacterium wasabiae WPP163]
gi|261606881|gb|ACX89367.1| TIM-barrel protein, yjbN family [Pectobacterium wasabiae WPP163]
Length = 340
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 99/158 (62%), Gaps = 3/158 (1%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + V + + + +T++P++VK RIG+DD DSY LC+FI
Sbjct: 109 GCPSDRVQ-NGRFGACLMGEAALVADCIKAMKDSTSIPITVKTRIGIDDQDSYEFLCEFI 167
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+ T
Sbjct: 168 QTVAGRGECDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPALTIAINGGVKT 227
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 162
++E L+ VM+GR AYQNP L VD ++G
Sbjct: 228 LEEAKTHLQH-LDGVMMGREAYQNPG-ILAQVDRELFG 263
>gi|284929214|ref|YP_003421736.1| tRNA-U16,U17-dihydrouridine synthase [cyanobacterium UCYN-A]
gi|284809658|gb|ADB95355.1| tRNA-U16,U17-dihydrouridine synthase [cyanobacterium UCYN-A]
Length = 324
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 128/215 (59%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V +++ + + ++P++VK RIG+D+ D Y L
Sbjct: 93 NIGCPSDRVQ-NGRFGACLMAEPELVAKSVEKMQESVDIPITVKHRIGIDECDDYESLKY 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ S S + FI+H+RKA L G+SP ENR IPPL+Y+ Y+L +DFP LT +NGGI
Sbjct: 152 FV-RIVSESGCKKFIVHARKAWLQGLSPKENRNIPPLRYQDVYSLKKDFPHLTIEINGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++++ L + VM+GR AY NP Y L VD Y + ++ LTR Q++E Y
Sbjct: 211 TNLEQISHHL-QFIDSVMLGRIAYNNP-YLLATVDKDFYKSSTTPLTRYQIIENILPY-- 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + ++ + + + LL F G +KR
Sbjct: 267 --VEYWASHGLKLHSITRHLLSLFIGISGTKEWKR 299
>gi|34496379|ref|NP_900594.1| tRNA-dihydrouridine synthase A [Chromobacterium violaceum ATCC
12472]
gi|34102232|gb|AAQ58598.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 347
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V + + + ++ V+VK RIG+D + Y+ L +
Sbjct: 112 NVGCPSERVQ-KGAFGACLMAEPQLVSDCVKAMRDAVDIDVTVKHRIGIDQIEHYDYLRE 170
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + R FI+H+R A+L G+SP ENR IPPLKY+Y Y L R+ PDL +NGG+
Sbjct: 171 FVDTVAE-AGCRTFIVHARNAILKGLSPKENREIPPLKYDYVYRLKRERPDLEILINGGV 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T E+ L K VMVGR AY NPW + D YG ++ R VVE Y
Sbjct: 230 KTNAEIAEHL-KHVDGVMVGREAYHNPWL-MADWDALFYGDETARPERVAVVEAMMPYVT 287
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A LG N VR + + +L F PG ++R
Sbjct: 288 ARLGDGSN----VRHIARHILGLFQGLPGARNWRR 318
>gi|392555864|ref|ZP_10303001.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas undina NCIMB
2128]
Length = 324
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 129/240 (53%), Gaps = 8/240 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + + N+PV+VK RIG+D+ DSY LC
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMAEPNLVAECVAAMKSEVNIPVTVKTRIGIDEEDSYEFLCA 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
I + S FIIH+RKA L G+SP ENR +P L Y Y L +D+P L ++NGG+
Sbjct: 152 LI-EASHKVGCDDFIIHARKAWLKGLSPKENREVPELNYPRVYQLKKDYPQLDLSINGGV 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VMVGR AY NP + L VD IYG ++ +R VV Y +
Sbjct: 211 KTIEQSLEHLQY-IDGVMVGREAYSNP-FMLNEVDEKIYGDAANTQSRHDVVRSMYDYIE 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ G N H V + +L F +PG F+R + S +++ + +P+
Sbjct: 269 EEM-RLGANFWH---VARHMLGIFQGQPGARGFRRHLSENGHGKQADLSVMDKALSYVPE 324
>gi|385873315|gb|AFI91835.1| TIM-barrel protein, yjbN family [Pectobacterium sp. SCC3193]
Length = 340
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 99/158 (62%), Gaps = 3/158 (1%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + V + + + +T++P++VK RIG+DD DSY LC+FI
Sbjct: 109 GCPSDRVQ-NGRFGACLMGEAALVADCIKAMKDSTSIPITVKTRIGIDDQDSYEFLCEFI 167
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+ T
Sbjct: 168 QTVAGRGECDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPALTIAINGGVKT 227
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 162
++E L+ VM+GR AYQNP L VD ++G
Sbjct: 228 LEEAKTHLQH-LDGVMMGREAYQNPG-ILAQVDRELFG 263
>gi|221213021|ref|ZP_03585997.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD1]
gi|221167234|gb|EED99704.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD1]
Length = 357
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 120/217 (55%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + VPV+VK RIGVD + Y + D
Sbjct: 109 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVAVPVTVKHRIGVDAVEDYAFVRD 167
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 168 FVGTVAEAGCS-TFIVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPSLEIVINGGI 226
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L VM+GR AY NP Y L VD YG+ + TR + + Y
Sbjct: 227 TTLDEVAQHLEH-VDGVMLGREAYHNP-YVLADVDARFYGSTDAAPTREEAEARLIEYCA 284
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L GTY + +++ L + PG ++R
Sbjct: 285 AELKRGTY------LGAIVRHALGLYRGVPGARGWRR 315
>gi|398819906|ref|ZP_10578451.1| tRNA-dihydrouridine synthase, partial [Bradyrhizobium sp. YR681]
gi|398229475|gb|EJN15552.1| tRNA-dihydrouridine synthase, partial [Bradyrhizobium sp. YR681]
Length = 284
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 120/217 (55%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V + + A +VPV+VKCRIG+DD D L D
Sbjct: 45 NVGCPSDRVK-DGRFGACLMAEPELVARCVDAMKAAVSVPVTVKCRIGIDDQDPEVAL-D 102
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+ + S I+H+RKA LNG+SP ENR IPPL Y+ Y L R PD+ +NGGI
Sbjct: 103 TLARAVVASGCDALIVHARKAWLNGLSPKENRDIPPLDYDRVYRLKRAMPDVPVIINGGI 162
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
+DE A L AH VM+GRAAYQ PW L VD+ ++G + T ++ E Y
Sbjct: 163 AGLDEARAHL---AHVDGVMLGRAAYQEPWRLLS-VDSDVFGEAAPHATMQEAFEAMMPY 218
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+A L + R H + + + FH+ PG F+R
Sbjct: 219 IEAQLAR--DMRLHA--ITRHFVGAFHAVPGARAFRR 251
>gi|440752163|ref|ZP_20931366.1| tRNA dihydrouridine synthase A family protein [Microcystis
aeruginosa TAIHU98]
gi|440176656|gb|ELP55929.1| tRNA dihydrouridine synthase A family protein [Microcystis
aeruginosa TAIHU98]
Length = 352
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 118/215 (54%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V +S + ++PV+VK RIG+DD DSY + +
Sbjct: 113 NVGCPSSRVK-EGNFGACLMANPELVARGISAMNQAVSIPVTVKQRIGIDDQDSYENMAN 171
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ R F IH+RKA L G+SP ENRT+PPL+Y+ Y L F L +NGGI
Sbjct: 172 FVRIVADAGCQR-FTIHARKAWLQGLSPKENRTVPPLRYDDVYRLKNQFSHLFIEINGGI 230
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ L+ VM+GRAAY NP Y VD YG + TR +V++K Y D
Sbjct: 231 INLEQARQHLQL-VDAVMIGRAAYDNP-YLFATVDRDFYGESVTPPTREEVIKKMLPYID 288
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + K LL F +PG +KR
Sbjct: 289 ----EWVSKGYKLHQISKHLLQLFAGQPGTKAWKR 319
>gi|254177532|ref|ZP_04884187.1| tRNA-dihydrouridine synthase A [Burkholderia mallei ATCC 10399]
gi|160698571|gb|EDP88541.1| tRNA-dihydrouridine synthase A [Burkholderia mallei ATCC 10399]
Length = 339
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 112/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP + +NGG+
Sbjct: 155 FVGTVAA-AGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGV 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV LR VM+GR AY NP Y L +D Y A + TR +V K Y
Sbjct: 214 TTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYSASAPAPTREEVEAKLVEYCA 271
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 272 AELARGTY 279
>gi|390440035|ref|ZP_10228391.1| tRNA-dihydrouridine synthase A [Microcystis sp. T1-4]
gi|389836562|emb|CCI32515.1| tRNA-dihydrouridine synthase A [Microcystis sp. T1-4]
Length = 342
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 118/215 (54%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V +S + ++PV+VK RIG+D DSY + +
Sbjct: 100 NVGCPSSRVK-EGNFGACLMANPELVARGISAMNQAVSIPVTVKQRIGIDHQDSYENMAN 158
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ R F IH+RKA L G+SP ENRT+PPL+Y+ Y L FP L +NGGI
Sbjct: 159 FVRIVADAGCQR-FTIHARKAWLQGLSPKENRTVPPLRYDDVYRLKNQFPHLFIEINGGI 217
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ L+ VM+GRAAY NP Y VD YG + TR +V++K Y D
Sbjct: 218 INLEQARQHLQL-VDAVMIGRAAYDNP-YLFATVDRDFYGKSVTPPTREEVIKKMLPYID 275
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + K LL F +PG +KR
Sbjct: 276 ----EWVSKGYKLHQISKHLLQLFAGQPGTKAWKR 306
>gi|166365548|ref|YP_001657821.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa NIES-843]
gi|166087921|dbj|BAG02629.1| dihydrouridine synthase TIM-barrel protein [Microcystis aeruginosa
NIES-843]
Length = 342
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 118/215 (54%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V +S + ++PV+VK RIG+D DSY + +
Sbjct: 100 NVGCPSSRVK-EGNFGACLMANPELVARGISAMNQAVSIPVTVKQRIGIDHQDSYENMAN 158
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ R F IH+RKA L G+SP ENRT+PPL+Y+ Y L FP L +NGGI
Sbjct: 159 FVRIVADAGCQR-FTIHARKAWLQGLSPKENRTVPPLRYDDVYRLKNQFPHLFIEINGGI 217
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ L+ VM+GRAAY NP Y VD YG + TR +V++K Y D
Sbjct: 218 INLEQARQHLQL-VDAVMIGRAAYDNP-YLFATVDRDFYGESVTPPTREEVIKKMLPYID 275
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + K LL F +PG +KR
Sbjct: 276 ----EWVSKGYKLHQISKHLLQLFAGQPGTKAWKR 306
>gi|84515494|ref|ZP_01002856.1| tRNA-dihydrouridine synthase A [Loktanella vestfoldensis SKA53]
gi|84510777|gb|EAQ07232.1| tRNA-dihydrouridine synthase A [Loktanella vestfoldensis SKA53]
Length = 315
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 117/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM + V E ++ + A ++PV+VKCRIGVDD + L D
Sbjct: 80 NCGCPSDRVQS-GFFGAVLMENAALVAECVAAMIAAVDIPVTVKCRIGVDDQTPSDVLPD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +VS+ R F IH+RKA L G+SP ENR IPPL ++ A+ FP L ++NGGI
Sbjct: 139 FIARVSAAGVDR-FSIHARKAWLQGLSPKENRDIPPLDHDLVIAMKALFPHLHLSVNGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++D+ L +G VM+GRAAY P L D IY P SG + VV Y
Sbjct: 198 TSLDQAQDFLDRGLDGVMIGRAAYHTPCDILLDADARIYADP-SGRSAEDVVHLMLPY-- 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + N + + + +L F PG ++R
Sbjct: 255 --IAEHLQNGGRLGQITRHMLGMFQGRPGAKAWRR 287
>gi|315125488|ref|YP_004067491.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. SM9913]
gi|315014001|gb|ADT67339.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. SM9913]
Length = 310
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 130/240 (54%), Gaps = 8/240 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E ++ + + ++PV+VK RIG+D+ DSY LC
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMAEPELVAECVAAMKSEVSIPVTVKTRIGIDEQDSYEFLCA 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
I + S FIIH+RKA L G+SP ENR +P L Y Y L +D+P L ++NGG+
Sbjct: 138 LI-EASHKVGCDDFIIHARKAWLKGLSPKENREVPELNYPRVYQLKKDYPQLDLSINGGV 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VMVGR AY NP + L VD IYG ++ TR VV Y +
Sbjct: 197 KTIEQSLEHLQY-IDGVMVGREAYSNP-FMLNEVDEKIYGDAANTQTRHDVVRSMYDYIE 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ G N H V + +L F +PG F+R + S +++ + +P+
Sbjct: 255 EEM-RLGANFWH---VARHMLGIFQGQPGARGFRRHLSENGHGKQADLSVMDKALSYVPE 310
>gi|375110873|ref|ZP_09757088.1| tRNA-U16,U17-dihydrouridine synthase [Alishewanella jeotgali KCTC
22429]
gi|374569043|gb|EHR40211.1| tRNA-U16,U17-dihydrouridine synthase [Alishewanella jeotgali KCTC
22429]
Length = 331
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 126/241 (52%), Gaps = 8/241 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P+ V +++ + ++PVSVK RIG+DD D Y L D
Sbjct: 93 NVGCPSDRVQ-NGMFGACLMARPQLVADSVKAMQDAVSIPVSVKTRIGIDDSDEYQFLQD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + R F+IH+RKA L G+SP ENR IPPL Y Y L +DFP L ++NGGI
Sbjct: 152 FVATVAA-AGCRQFVIHARKAWLKGLSPKENREIPPLNYPRVYQLKQDFPTLDISINGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L+ VM+GR AY NP Y L VD +Y S + Q+V Y +
Sbjct: 211 KTLAEAEQQLQY-LDGVMIGREAYTNP-YLLSQVDAVLYQDVWSVPGQHQLVRLMVPYIE 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ G H + + +L F +PG ++R L + + +P+
Sbjct: 269 QQM-QQGARFWH---IARHMLGLFQGQPGARQWRRLLSEQGHLADAKPELLLQALALVPE 324
Query: 243 S 243
S
Sbjct: 325 S 325
>gi|109900349|ref|YP_663604.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas atlantica T6c]
gi|109702630|gb|ABG42550.1| tRNA-U16,U17-dihydrouridine synthase [Pseudoalteromonas atlantica
T6c]
Length = 345
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 118/215 (54%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + + ++PV+VK RIG+DD D Y L D
Sbjct: 95 NVGCPSDRVQ-NGRFGACLMAEPETVAACIQAMQKEVDIPVTVKSRIGIDDMDEYKDLTD 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ + F +H+RKA L G+SP ENR IPPL Y+ YAL +FP L ++NGG+
Sbjct: 154 FIQIVAD-AGCDIFTVHARKAWLKGLSPKENRDIPPLMYDRVYALKEEFPQLNLSINGGV 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+ L K VM+GR Y NP Y L VD Y S +R ++V Y +
Sbjct: 213 KTLDDATMHLEK-LDGVMIGREVYSNP-YILADVDKLFYQDDSPVPSREEIVHAMLPYVE 270
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A + + ++ + +L F +PG +++R
Sbjct: 271 AQMASGA----RAWNIARHMLGLFQGQPGGRIWRR 301
>gi|354596235|ref|ZP_09014252.1| TIM-barrel protein, yjbN family [Brenneria sp. EniD312]
gi|353674170|gb|EHD20203.1| TIM-barrel protein, yjbN family [Brenneria sp. EniD312]
Length = 346
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 101/166 (60%), Gaps = 3/166 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + +PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGRFGACLMGEAPLVADCVKAMKDRVAIPVTVKTRIGIDDRDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI+ V+ FI+H+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+
Sbjct: 170 FIHTVAERGGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPALTIAINGGV 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGL 168
T++E L+ VM+GR AY NP L VD ++G P++ L
Sbjct: 230 KTLEEAKIHLQH-LDGVMMGREAYHNPG-ILAQVDAELFGVPAASL 273
>gi|425446543|ref|ZP_18826546.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9443]
gi|389733181|emb|CCI03025.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9443]
Length = 353
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 118/215 (54%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V +S + ++PV+VK RIG+D DSY + +
Sbjct: 114 NVGCPSSRVK-EGNFGACLMANPELVARVISAMNQAVSIPVTVKQRIGIDHQDSYENMAN 172
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ R F IH+RKA L G+SP ENRT+PPL+Y+ Y L FP L +NGGI
Sbjct: 173 FVRIVADAGCQR-FTIHARKAWLQGLSPKENRTVPPLRYDDVYRLKNQFPHLFIEINGGI 231
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ L+ VM+GRAAY NP Y VD YG + TR +V++K Y D
Sbjct: 232 INLEQARQHLQL-VDAVMIGRAAYDNP-YLFATVDRDFYGESVTPPTREEVIKKMLPYID 289
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + K LL F +PG +KR
Sbjct: 290 ----EWVSKGYKLHQISKHLLQLFAGQPGTKAWKR 320
>gi|291615814|ref|YP_003518556.1| DusA [Pantoea ananatis LMG 20103]
gi|386081194|ref|YP_005994719.1| tRNA-dihydrouridine synthase A DusA [Pantoea ananatis PA13]
gi|291150844|gb|ADD75428.1| DusA [Pantoea ananatis LMG 20103]
gi|354990375|gb|AER34499.1| tRNA-dihydrouridine synthase A DusA [Pantoea ananatis PA13]
Length = 331
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 124/244 (50%), Gaps = 11/244 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY L D
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMAEAGLVADGIKAMRDVVDIPVTVKTRIGIDDQDSYAFLTD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+
Sbjct: 152 FIGTVAERGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTIAINGGV 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP L VD ++G + VV Y +
Sbjct: 212 KTLEEAKTHLQH-LDGVMMGREAYQNPG-ILAQVDRELFGRDRPAVDPVAVVRAMYPYIE 269
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
A L GTY + V + +L F PG ++R LE + +
Sbjct: 270 AELSKGTYLGH------VTRHMLGLFQGIPGARQWRRHLSENAHKPGADVRVLEAALALV 323
Query: 241 PDSV 244
D +
Sbjct: 324 ADKI 327
>gi|320539402|ref|ZP_08039071.1| putative tRNA-dihydrouridine synthase A [Serratia symbiotica str.
Tucson]
gi|320030527|gb|EFW12537.1| putative tRNA-dihydrouridine synthase A [Serratia symbiotica str.
Tucson]
Length = 342
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 117/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSGRVQ-NGMFGACLMAQAALVADGIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F +H+RKA L+G+SP ENR +PPL Y Y L RDFP LT +NGG+
Sbjct: 170 FISTVAGRGECAMFTLHARKAWLSGLSPKENREVPPLDYPRVYQLKRDFPALTIAINGGV 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP L VD ++G + ++E Y +
Sbjct: 230 KTLEEAQQHLQH-LDGVMMGREAYQNPG-ILARVDNELFGVQGAVKDSVAIIESLYPYIE 287
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 288 REL----SNGTYLGHITRHILGLFQGVPGARQWRR 318
>gi|425467381|ref|ZP_18846664.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9809]
gi|389829879|emb|CCI28470.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9809]
Length = 331
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 118/215 (54%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V +S + ++PV+VK RIG+D DSY + +
Sbjct: 89 NVGCPSSRVK-EGNFGACLMANPELVARGISAMNQAVSIPVTVKQRIGIDHQDSYENMAN 147
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ R F IH+RKA L G+SP ENRT+PPL+Y+ Y L FP L +NGGI
Sbjct: 148 FVRIVADAGCQR-FTIHARKAWLQGLSPKENRTVPPLRYDDVYRLKNQFPHLFIEINGGI 206
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ L+ VM+GRAAY NP Y VD YG + TR +V++K Y D
Sbjct: 207 INLEQARQHLQL-VDAVMIGRAAYDNP-YLFATVDRDFYGESVTPPTREEVIKKMLPYID 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + K LL F +PG +KR
Sbjct: 265 ----EWVSKGYKLHQISKHLLQLFAGQPGTKAWKR 295
>gi|255264528|ref|ZP_05343870.1| tRNA-dihydrouridine synthase A [Thalassiobium sp. R2A62]
gi|255106863|gb|EET49537.1| tRNA-dihydrouridine synthase A [Thalassiobium sp. R2A62]
Length = 330
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 117/212 (55%), Gaps = 13/212 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG M P V E S + A ++ ++VKCRIGVDD D + L
Sbjct: 97 NCGCPSDRVQS-GAFGAIHMTTPDLVAEICSAMIAASHAEITVKCRIGVDDQDPHEVLPT 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K+ + + R IH+RKA L G+SP ENR IPPL Y + + +FPDL ++NGGI
Sbjct: 156 FLTKIRA-AGVRRVTIHARKAWLQGLSPKENRDIPPLDYPLVHQMKAEFPDLHISINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRR--QVVEKYQIY 180
++DE L +G VM+GRAAY P L D I+G G TR +VV++ + Y
Sbjct: 215 ASLDEAKIHLNQGLDGVMIGRAAYHTPAAILTDADQMIWG---QGTTRSSFEVVDRMKPY 271
Query: 181 -GDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 211
D I G R H V + +L F +PG
Sbjct: 272 IADHI---AGGGRMH--HVTRHMLGLFSGQPG 298
>gi|300312882|ref|YP_003776974.1| hypothetical protein Hsero_3587 [Herbaspirillum seropedicae SmR1]
gi|300075667|gb|ADJ65066.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
Length = 357
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 126/219 (57%), Gaps = 8/219 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + + + ++ V+VK RIG+D+ +SY+ + D
Sbjct: 111 NCGCPSERVQ-KGAFGACLMGEPTLVADCVKAMRDAVSIDVTVKHRIGIDEVESYDFVRD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +++ + + FI+H+R A+L G+SP ENR IPPLKY+Y Y L +DFP L +NGGI
Sbjct: 170 FVGQIAE-AGCQTFIVHARNAILKGLSPKENREIPPLKYDYAYQLKKDFPSLEILINGGI 228
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGL--TRRQVVEKYQIY 180
T+ E++ L K VM+GR AY NP Y + D Y A GL +R +V+E Y
Sbjct: 229 KTLPEIDEHL-KHVDGVMLGREAYHNP-YLMAGFDARYYAALEGGLQRSRAEVIEAMLPY 286
Query: 181 GDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKR 217
L +G+N +R + + +L PG F++
Sbjct: 287 IKRQLELHGDNGRGLRLNSITRHMLGLMAGMPGARAFRQ 325
>gi|124024726|ref|YP_001013842.1| tRNA-dihydrouridine synthase A [Prochlorococcus marinus str.
NATL1A]
gi|123959794|gb|ABM74577.1| tRNA-dihydrouridine synthase [Prochlorococcus marinus str. NATL1A]
Length = 335
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 134/241 (55%), Gaps = 12/241 (4%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPSP+V G FG LM PK V + + + N+P++VK R+G+D+ DS + L F+
Sbjct: 103 GCPSPRVKS-GNFGACLMGKPKIVANCIEKMKESCNIPITVKHRLGIDNLDSDDYLLTFV 161
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
SL+ FIIH+RKA LNG++P ENRTIPPL+YE L P+L LNGGINT
Sbjct: 162 -DTCSLAGADRFIIHARKAWLNGLNPKENRTIPPLQYERVQKLKNHRPELIIELNGGINT 220
Query: 125 VDEVNAALR--KGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ AL+ GA MVGRAAY +P + +D+ I+G L+R +++++ + +
Sbjct: 221 INDSIEALKVFDGA---MVGRAAYSHP-FLWTKIDSLIFGQKEKYLSRSKIIKRLIPFAE 276
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L G + + + +L+ + P + +++ QT K S L++ + D
Sbjct: 277 KHLENDG----RLWQISRHILNLIENIPNAKILRQELSEKCQTQKADISILKKIAQQLED 332
Query: 243 S 243
+
Sbjct: 333 A 333
>gi|261346564|ref|ZP_05974208.1| tRNA-dihydrouridine synthase A [Providencia rustigianii DSM 4541]
gi|282565268|gb|EFB70803.1| tRNA-dihydrouridine synthase A [Providencia rustigianii DSM 4541]
Length = 341
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 120/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM D + V + + + ++PV+VK RIG+D+ DSY LCD
Sbjct: 107 NVGCPSDRVQ-NGRFGACLMADAQLVADCVKAMRDVVSIPVTVKTRIGIDEQDSYEFLCD 165
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS+ F+IH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+
Sbjct: 166 FIDTVSTKGDCDTFVIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMAINGGV 225
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L K VM+GR AYQNP L VD ++ + + V + Y +
Sbjct: 226 KTLEEAKEHL-KYLDGVMMGREAYQNP-SILTAVDNQLFDETMPIVDNIEAVRRMYPYIE 283
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 284 KEL----SNGAYLGHMTRHMLGIFQGIPGARQWRR 314
>gi|127511470|ref|YP_001092667.1| tRNA-dihydrouridine synthase A [Shewanella loihica PV-4]
gi|126636765|gb|ABO22408.1| TIM-barrel protein, yjbN family [Shewanella loihica PV-4]
Length = 329
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 125/215 (58%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + ++ + ++PV+VK RIG+D+ DSY L +
Sbjct: 97 NVGCPSDRVQ-NGRFGACLMAEPDLVAQCVAAMNEVVDIPVTVKTRIGIDEQDSYEFLTE 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KVS+ + FIIH+RKA L G+SP ENR IP L Y+ Y L +D+P L+ ++NGG+
Sbjct: 156 FVDKVSA-AGCDTFIIHARKAWLQGLSPKENREIPELDYDRVYRLKQDYPQLSISINGGV 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L++ VMVGR AYQNP Y L VD + G L+R V+E Y +
Sbjct: 215 KTLEECGEHLKQ-LDGVMVGREAYQNP-YLLAQVDQQLCGLDKPVLSRDAVLENMIPYIE 272
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + G + + + + + E G+ ++R
Sbjct: 273 KHLVSGG----RLNHITRHMTGLYQGEAGSRAWRR 303
>gi|378769115|ref|YP_005197590.1| tRNA-dihydrouridine synthase A [Pantoea ananatis LMG 5342]
gi|365188603|emb|CCF11553.1| tRNA-dihydrouridine synthase A [Pantoea ananatis LMG 5342]
Length = 331
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 124/244 (50%), Gaps = 11/244 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY L D
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMAEAGLVADGIKAMRDVVDIPVTVKTRIGIDDQDSYAFLTD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+
Sbjct: 152 FIGTVAERGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTIAINGGV 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQNP L VD ++G + VV Y +
Sbjct: 212 KTLEEAKTHLQH-LDGVMMGREAYQNPG-ILAQVDRELFGRDRPAVDPVAVVRAMYPYIE 269
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
A L GTY + V + +L F PG ++R LE + +
Sbjct: 270 AELSKGTY------LGHVTRHMLGLFQGIPGARQWRRHLSENAHKPGADVRVLEAALALV 323
Query: 241 PDSV 244
D +
Sbjct: 324 ADKI 327
>gi|126664937|ref|ZP_01735920.1| Dihydrouridine synthase TIM-barrel protein yjbN [Marinobacter sp.
ELB17]
gi|126630307|gb|EBA00922.1| Dihydrouridine synthase TIM-barrel protein yjbN [Marinobacter sp.
ELB17]
Length = 321
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 122/219 (55%), Gaps = 16/219 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS KV + G LM P V E + A T++PV+VK R G++ +S+++LC
Sbjct: 80 NVGCPSDKVQNN-MIGACLMGHPDIVAEGFKAMQAATDIPVTVKHRTGINGRESWDELCG 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V++ + + FI+H+R A+L G+SP ENR +PPLKY++ Y L +P L +NGGI
Sbjct: 139 FIETVAA-AGCKTFIVHARIAVLEGLSPKENRDVPPLKYDWVYHLKAKYPQLEIIINGGI 197
Query: 123 NTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQ-- 178
TV+E + L AH VM+GR AY NPW L VD+ +G P + R + +E
Sbjct: 198 KTVNECHQHL---AHTDGVMLGREAYHNPW-ILTQVDSEFFGEPEKAVNRHEALEAMYPF 253
Query: 179 IYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
I + G Y + + + +L FH PG F+R
Sbjct: 254 IEQELARGVY------LGHISRHMLGLFHGVPGGRQFRR 286
>gi|424789365|ref|ZP_18216029.1| Putative dihydrouridine synthase [Xanthomonas translucens pv.
graminis ART-Xtg29]
gi|422798588|gb|EKU26662.1| Putative dihydrouridine synthase [Xanthomonas translucens pv.
graminis ART-Xtg29]
Length = 339
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 129/236 (54%), Gaps = 10/236 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + ++ +A ++PV+VKCR+GVD D Y
Sbjct: 104 NCGCPSDRVQA-GRFGACLMREPALVADCVAAMAQAVDIPVTVKCRLGVDQDDDYAVFLA 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V++ + F++H+R A L G+SP ENR +PPL+Y++ Y L R+ P L LNGG+
Sbjct: 163 FVDQVAA-AGCGLFVVHARNAWLQGLSPKENREVPPLRYDWAYRLKRERPQLQIVLNGGL 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
VD A L VM+GRAAY +P Y L +D A+ GA R +++ + Y +
Sbjct: 222 ADVDTARAQL-DAVDGVMLGRAAYHDP-YVLHRLDAALTGATPR--PRAELLRALRPYVE 277
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIV 238
A L + ++ + + LL FH +PG F++ + LE+ ++
Sbjct: 278 ARLA----DGVALKHIARHLLGLFHGQPGGRAFRQVLSEGAHRPGADWALLEQALL 329
>gi|392536593|ref|ZP_10283730.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas marina mano4]
Length = 324
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 130/240 (54%), Gaps = 8/240 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+D+ DSY LC
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMAEPELVAQCVAAMKNEVSIPVTVKTRIGIDEQDSYEFLCA 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
I + S FIIH+RKA LNG+SP ENR +PPL Y Y L +D+ L ++NGG+
Sbjct: 152 LI-EASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQLKKDYQQLDLSINGGV 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VMVGR AY NP + L VD IYG ++ TR VV Y +
Sbjct: 211 KTIEQSLEHLQY-IDGVMVGREAYSNP-FMLNEVDEKIYGDTANTQTRHDVVRSMYDYIE 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ G N H V + +L F +PG F+R + S +++ + +P+
Sbjct: 269 EEM-RLGANFWH---VARHMLGIFQGQPGARGFRRHLSENGHGKQADLSVMDKALSFVPE 324
>gi|425457682|ref|ZP_18837380.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9807]
gi|389800902|emb|CCI19865.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9807]
Length = 353
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 118/215 (54%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V +S + ++PV+VK RIG+D DSY + +
Sbjct: 114 NVGCPSSRVK-EGNFGACLMANPELVARGISAMNQAVSIPVTVKQRIGIDHQDSYENMAN 172
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ R F IH+RKA L G+SP ENRT+PPL+Y+ Y L FP L +NGGI
Sbjct: 173 FVRIVADAGCQR-FTIHARKAWLQGLSPKENRTVPPLRYDDVYRLKNQFPHLFIEINGGI 231
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ L+ VM+GRAAY NP Y VD YG + TR ++++K Y D
Sbjct: 232 INLEQARQHLQL-VDAVMIGRAAYDNP-YLFATVDRDFYGESVTPPTREEIIKKMLPYID 289
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + K LL F +PG +KR
Sbjct: 290 ----EWVSKGYKLHQISKHLLQLFAGQPGTKAWKR 320
>gi|372282400|ref|ZP_09518436.1| tRNA-dihydrouridine synthase A [Oceanicola sp. S124]
Length = 335
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P+ V + ++ + A V V+VKCRIGVDD D L D
Sbjct: 100 NCGCPSDRVQS-GTFGAVLMKHPELVADCVAAMRAAVTVEVTVKCRIGVDDQDPEEVLPD 158
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K+S+ + R +H+RKA L G+SP ENR IPPL Y + + FPDL ++NGGI
Sbjct: 159 FLDKISA-AGCRRVTVHARKAWLQGLSPKENRDIPPLDYPLVLRMRQAFPDLHLSINGGI 217
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSS 166
++D+ A L +G VMVGRAAY P L D I+G P
Sbjct: 218 TSLDQAEALLAQGLDGVMVGRAAYHEPGNMLCGADARIWGQPGG 261
>gi|242238196|ref|YP_002986377.1| yjbN family TIM-barrel protein [Dickeya dadantii Ech703]
gi|242130253|gb|ACS84555.1| TIM-barrel protein, yjbN family [Dickeya dadantii Ech703]
Length = 335
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + +PV+VK RIG+DD DSY+ LC
Sbjct: 102 NVGCPSDRVQ-NGRFGACLMAEAELVADCVDAMRGRVRLPVTVKTRIGIDDQDSYDFLCA 160
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FI+H+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 161 FIRTVAERGGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPALTIAINGGI 220
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L+ VMVGR AYQNP L VD+ ++G + VVE Y +
Sbjct: 221 KTLEQAQQHLQH-LDGVMVGREAYQNPG-VLAQVDSQLFGVTAPVPDLFAVVEGMYPYIE 278
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + G H + + +L F PG ++R
Sbjct: 279 REL-SRGAQLGH---ITRHMLGLFQGLPGARQWRR 309
>gi|149926267|ref|ZP_01914529.1| tRNA-dihydrouridine synthase A [Limnobacter sp. MED105]
gi|149825085|gb|EDM84297.1| tRNA-dihydrouridine synthase A [Limnobacter sp. MED105]
Length = 314
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 120/213 (56%), Gaps = 9/213 (4%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LM +P V + + + ++ V+VK RIG+D +S L DF+
Sbjct: 82 GCPSERVQ-KGAFGACLMAEPGLVADCVKAMRDACSIDVTVKHRIGLDYDESETMLFDFV 140
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KVS + FI+H+R A+L G+SP ENR IPPL+YE L + FP L LNGGI T
Sbjct: 141 GKVSE-AGCNTFIVHARNAVLKGLSPKENRDIPPLRYEVVKRLKQHFPHLQIILNGGITT 199
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++ + + L + A M+GR AY NPW G + + G P++ TR V+++ + Y +
Sbjct: 200 LEAIESHL-QWADGCMIGREAYSNPWLLAGFDE--VIGKPTTQKTRLDVIDELRAYAEQE 256
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + +R + K L FH +PG L+++
Sbjct: 257 L----SRGESIRSITKSWLGLFHGQPGGRLYRQ 285
>gi|189350413|ref|YP_001946041.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans ATCC
17616]
gi|189334435|dbj|BAG43505.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans ATCC
17616]
Length = 344
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 122/217 (56%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSVPVTVKHRIGVDAVEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L R+FP L +NGGI
Sbjct: 155 FVGTVAEAGCST-FIVHARNAILKGLSPKENREIPPLKYDYAYRLKREFPSLEIVINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L + VM+GR AY NP Y L VD YG+ + TR + + Y
Sbjct: 214 KTLDEVAQHL-EHVDGVMLGREAYHNP-YVLADVDARFYGSTDAAPTREEAEARLIEYCA 271
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L GTY + +++ L + PG ++R
Sbjct: 272 AELKRGTY------LGAIVRHALGLYRGVPGARGWRR 302
>gi|440731707|ref|ZP_20911697.1| tRNA-dihydrouridine synthase A [Xanthomonas translucens DAR61454]
gi|440371128|gb|ELQ07985.1| tRNA-dihydrouridine synthase A [Xanthomonas translucens DAR61454]
Length = 339
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 127/241 (52%), Gaps = 20/241 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + ++ + ++PV+VKCR+GVD D Y
Sbjct: 104 NCGCPSDRVQA-GRFGACLMREPALVADCVATMVQAVDIPVTVKCRLGVDQDDDYEVFLA 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V++ + F++H+R A L G+SP ENR +PPL+Y++ Y L R+ P L LNGG+
Sbjct: 163 FVDQVAA-AGCGLFVVHARNAWLQGLSPKENREVPPLRYDWAYRLKRERPQLQVVLNGGL 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGA---PSSGLTR--RQVVEKY 177
VD A L VM+GRAAY +P Y L +D A+ GA P + L R R VE
Sbjct: 222 ADVDTARAQL-DAVDGVMLGRAAYHDP-YVLHRLDAALTGATPRPRAALLRALRPYVETR 279
Query: 178 QIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETI 237
G A+ + + + LL FH +PG F++ + LE+ +
Sbjct: 280 LADGVAL-----------KHIARHLLGLFHGQPGGRAFRQVLSEGAHRLGADWALLEQAL 328
Query: 238 V 238
+
Sbjct: 329 L 329
>gi|421082495|ref|ZP_15543378.1| TRNA-dihydrouridine synthase [Pectobacterium wasabiae CFBP 3304]
gi|401702732|gb|EJS92972.1| TRNA-dihydrouridine synthase [Pectobacterium wasabiae CFBP 3304]
Length = 340
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 99/158 (62%), Gaps = 3/158 (1%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + V + + + +T++P++VK RIG+DD DSY LC+FI
Sbjct: 109 GCPSDRVQ-NGRFGACLMGEAALVADCIKAMKDSTSIPITVKTRIGIDDQDSYEFLCEFI 167
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ F+IH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+ T
Sbjct: 168 QTVAGRGECDTFVIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPALTLAINGGVKT 227
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 162
++E L+ VM+GR AYQNP L VD ++G
Sbjct: 228 LEEAKTHLQH-LDGVMMGREAYQNPG-ILAQVDRELFG 263
>gi|385331981|ref|YP_005885932.1| tRNA-dihydrouridine synthase, TIM-barrel, YjbN [Marinobacter
adhaerens HP15]
gi|311695131|gb|ADP98004.1| tRNA-dihydrouridine synthase, TIM-barrel, YjbN [Marinobacter
adhaerens HP15]
Length = 344
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 127/240 (52%), Gaps = 15/240 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P V E + + T++PV+VK RIG+D +S++ LC+
Sbjct: 104 NVGCPSDRVQNN-MIGACLMGHPDKVAEGVRAMIEATDLPVTVKHRIGIDGRESWDDLCE 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KVS + R FI+H+R A+L G+SP ENR +PPLKY++ Y L +P L +NGGI
Sbjct: 163 FVEKVSE-AGCRTFIVHARIAILEGLSPKENREVPPLKYDWVYRLKAKYPHLEIIINGGI 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T E + LR VM+GR AY NPW G VD +G + TR Q + +
Sbjct: 222 KTFGECHEHLRH-TDGVMLGREAYHNPWLLAG-VDPEFFGQAAPVETRHQALRAMLPF-- 277
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
+G+ + + + LL FH +PG F+R K+ A + +T + E
Sbjct: 278 --IGSELERGVFLTHMSRHLLGLFHGQPGGRQFRRYISENAHKSGAGLEVIETALEKVRE 335
>gi|443316059|ref|ZP_21045520.1| tRNA dihydrouridine synthase A [Leptolyngbya sp. PCC 6406]
gi|442784341|gb|ELR94220.1| tRNA dihydrouridine synthase A [Leptolyngbya sp. PCC 6406]
Length = 345
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 120/216 (55%), Gaps = 10/216 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V + ++ + A + +PVSVK RIG+DD D Y L
Sbjct: 113 NVGCPSDRVQS-GHFGACLMAQPQRVADCVATMMAASPLPVSVKHRIGIDDLDHYEHLFS 171
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ R F +H+RKA L G+SP ENRT+PPL+Y + L +DFP L +NGG
Sbjct: 172 FVATVAATGCQR-FTVHARKAWLQGLSPKENRTVPPLRYGEVHRLKQDFPQLWIEINGGF 230
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+D+V L + VM+GRAAY P Y VD +GA S +R QVV Y D
Sbjct: 231 TDLDQVEQQL-QAVDAVMIGRAAYDTP-YLFAEVDQRFFGADMSPPSRAQVVATMLPYID 288
Query: 183 AILGTYGNNRP-HVRDVMKPLLHFFHSEPGNGLFKR 217
Y R + + + LL FH +PG+ +++
Sbjct: 289 -----YWTGRGLKLYKITRHLLMLFHGQPGSRRWRQ 319
>gi|291326742|ref|ZP_06125653.2| tRNA dihydrouridine synthase A [Providencia rettgeri DSM 1131]
gi|291313086|gb|EFE53539.1| tRNA dihydrouridine synthase A [Providencia rettgeri DSM 1131]
Length = 288
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM D + V + + + ++PV+VK RIG+D+ DSY LCD
Sbjct: 54 NVGCPSDRVQ-NGRFGACLMGDAQLVADCVKAMQDVVSIPVTVKTRIGIDEQDSYAFLCD 112
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+
Sbjct: 113 FIETVSDKGGCEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMAINGGV 172
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 162
T++E L+ VMVGR AYQNP L VD ++G
Sbjct: 173 KTLEEAKEHLQH-LDGVMVGREAYQNP-SILTVVDNQLFG 210
>gi|134295639|ref|YP_001119374.1| tRNA-dihydrouridine synthase A [Burkholderia vietnamiensis G4]
gi|134138796|gb|ABO54539.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia vietnamiensis
G4]
Length = 344
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 110/188 (58%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSVPVTVKHRIGVDAVEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 155 FVGTVAQ-AGCDTFIVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPALEIVINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L VM+GR AY NP Y L VD YG+ + TR + K Y
Sbjct: 214 KTLDEVAEHLEH-VDGVMLGREAYHNP-YVLAGVDARFYGSTAPAPTREEAEAKLIEYCA 271
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 272 AELKRGTY 279
>gi|448244174|ref|YP_007408227.1| tRNA-dihydrouridine synthase A [Serratia marcescens WW4]
gi|445214538|gb|AGE20208.1| tRNA-dihydrouridine synthase A [Serratia marcescens WW4]
Length = 336
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 118/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGQATLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR +PPL Y Y L RDFP LT +NGG+
Sbjct: 157 FIQTVAGRGECDMFTIHARKAWLSGLSPKENREVPPLDYPRVYQLKRDFPALTIAINGGV 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L+ VM+GR AYQNP L VD+ ++G ++ +VE Y +
Sbjct: 217 KTLGEAQQHLQH-LDGVMMGREAYQNPG-ILARVDSELFGVQTAVPDSVAIVEALYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F PG ++R
Sbjct: 275 REL----SNGTYLGHITRHILGLFQGVPGARQWRR 305
>gi|161524837|ref|YP_001579849.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans ATCC
17616]
gi|160342266|gb|ABX15352.1| TIM-barrel protein, yjbN family [Burkholderia multivorans ATCC
17616]
Length = 357
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 122/217 (56%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 109 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSVPVTVKHRIGVDAVEDYAFVRD 167
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L R+FP L +NGGI
Sbjct: 168 FVGTVAEAGCS-TFIVHARNAILKGLSPKENREIPPLKYDYAYRLKREFPSLEIVINGGI 226
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L + VM+GR AY NP Y L VD YG+ + TR + + Y
Sbjct: 227 KTLDEVAQHL-EHVDGVMLGREAYHNP-YVLADVDARFYGSTDAAPTREEAEARLIEYCA 284
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L GTY + +++ L + PG ++R
Sbjct: 285 AELKRGTY------LGAIVRHALGLYRGVPGARGWRR 315
>gi|421865213|ref|ZP_16296893.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia H111]
gi|358074676|emb|CCE47771.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia H111]
Length = 328
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 120/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + VPV+VK RIGVD + Y + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVAVPVTVKHRIGVDAVEDYAFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 139 FVGTVAE-AGCETFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPSLEIVINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L + VM+GR AY NP Y L VD YG+ ++ TR + + Y
Sbjct: 198 TTLDEVAQHL-EHVDGVMLGREAYHNP-YVLAEVDARFYGSTAAVPTREEAEAQLIAYCA 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L ++ +++ L + PG ++R
Sbjct: 256 AEL----KRDTYLGAIVRHALGLYRGMPGARGWRR 286
>gi|308051003|ref|YP_003914569.1| tRNA-U16,U17-dihydrouridine synthase [Ferrimonas balearica DSM
9799]
gi|307633193|gb|ADN77495.1| tRNA-U16,U17-dihydrouridine synthase [Ferrimonas balearica DSM
9799]
Length = 324
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 133/245 (54%), Gaps = 8/245 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + + + ++PV+VK RIG+D+ DSY L
Sbjct: 88 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVKAMQDVVSIPVTVKTRIGIDEQDSYEFLTR 146
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+S + F IH+RKA L G+SP ENR IP L Y+ Y + RDF L ++NGGI
Sbjct: 147 FIDTVAS-AGCDIFTIHARKAWLQGLSPKENREIPELIYDRAYQVKRDFAHLNISVNGGI 205
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ A L+ VMVGR AYQNP Y + VD +YG L+R +VVE+ Y
Sbjct: 206 TTLEQCEAHLQH-LDGVMVGREAYQNP-YMMAEVDQRLYGDDRPVLSRAEVVEQMIPY-- 261
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + +N V + +L F+ PG ++R L + + ++P+
Sbjct: 262 --LERHISNGGRANHVTRHMLGLFNGMPGARQWRRYLAQNAHLPGMGAELLADALASMPE 319
Query: 243 SVLDS 247
+ ++
Sbjct: 320 AAREA 324
>gi|365837578|ref|ZP_09378943.1| tRNA dihydrouridine synthase A [Hafnia alvei ATCC 51873]
gi|364561788|gb|EHM39672.1| tRNA dihydrouridine synthase A [Hafnia alvei ATCC 51873]
Length = 289
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 54 NVGCPSDRVQ-NGRFGACLMGEAQLVADGIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 112
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS F +H+RKA L+G+SP ENR IPPL YE Y L RDFP L +NGG+
Sbjct: 113 FIGIVSGKGECNSFTVHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLNIAINGGV 172
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E L+ VM+GR AYQ+P L HVD ++ + VV Y +
Sbjct: 173 KTLEEAKIHLQH-LDGVMMGREAYQSP-SILAHVDRELFDPTADVPNSIDVVRSLYPYIE 230
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +N ++ + + +L F S PG ++R
Sbjct: 231 REL----SNGTYLGHITRHILGLFQSIPGARQWRR 261
>gi|387902163|ref|YP_006332502.1| trNA dihydrouridine synthase A [Burkholderia sp. KJ006]
gi|387577055|gb|AFJ85771.1| tRNA dihydrouridine synthase A [Burkholderia sp. KJ006]
Length = 328
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 110/188 (58%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSVPVTVKHRIGVDAVEDYAFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 139 FVGTVAQ-AGCDTFIVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPALEIVINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L VM+GR AY NP Y L VD YG+ + TR + K Y
Sbjct: 198 KTLDEVAEHLEH-VDGVMLGREAYHNP-YVLAGVDARFYGSTAPAPTREEAEAKLIEYCA 255
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 256 AELKRGTY 263
>gi|224588182|gb|ACN58806.1| tRNA dihydrouridine synthase A [uncultured bacterium BLR9]
Length = 334
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 125/236 (52%), Gaps = 17/236 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V GCFG +LM +P VG+ ++ + A +VPV+VKCRIGVD+ + L I
Sbjct: 101 GCPSDRVQS-GCFGAALMKEPLRVGDCVAAMRAAVSVPVTVKCRIGVDEQEPREALPALI 159
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+ T F +H+RKA L+G+SP ENR +PPL Y YAL R P+LT +NGGI +
Sbjct: 160 EACTRAGVT-AFAVHARKAWLSGLSPKENREVPPLDYSLVYALKRARPELTIVINGGIGS 218
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+DE A L VM+GRAAYQ P L VD+ +G + R + E + Y I
Sbjct: 219 LDEAEAHLPH-VDGVMLGRAAYQTP-AILAEVDSRFFGEGA-----RDIGEAVEAYAAYI 271
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
P + + K +L F+ PG F+R K A QT + +F+
Sbjct: 272 GARLAEGVP-LNAMTKHMLGLFNGIPGARQFRRHLSENATKKGAGLQTLRDALAFV 326
>gi|397169543|ref|ZP_10492975.1| tRNA-U16,U17-dihydrouridine synthase [Alishewanella aestuarii B11]
gi|396088847|gb|EJI86425.1| tRNA-U16,U17-dihydrouridine synthase [Alishewanella aestuarii B11]
Length = 317
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 126/241 (52%), Gaps = 8/241 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P+ V +++ + ++PVSVK RIG+DD D Y L D
Sbjct: 79 NVGCPSDRVQ-NGMFGACLMARPQLVADSVKAMQDAISIPVSVKTRIGIDDSDEYQFLQD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + R F+IH+RKA L G+SP ENR IPPL Y Y L +DFP L ++NGGI
Sbjct: 138 FVATVAA-AGCRQFVIHARKAWLKGLSPKENREIPPLNYPRVYQLKQDFPTLDISINGGI 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L+ VM+GR AY NP Y L VD +Y S + Q+V Y +
Sbjct: 197 KTLAEAEQQLQY-LDGVMIGREAYTNP-YLLSQVDAVLYQDVWSVPGQHQLVRLMVPYIE 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ G H + + +L F +PG ++R L + + +P+
Sbjct: 255 QQM-QQGARFWH---IARHMLGLFQGQPGARQWRRLLSEQGHLADAKPELLLQALSLVPE 310
Query: 243 S 243
S
Sbjct: 311 S 311
>gi|418056438|ref|ZP_12694491.1| TIM-barrel protein, yjbN family [Hyphomicrobium denitrificans
1NES1]
gi|353209657|gb|EHB75060.1| TIM-barrel protein, yjbN family [Hyphomicrobium denitrificans
1NES1]
Length = 336
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 120/238 (50%), Gaps = 8/238 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V ++ + A+ +VPV+VKCRIG+D+ D L
Sbjct: 93 NVGCPSDRVQ-EGRFGACLMSEPELVAACVAAMRAHHSVPVTVKCRIGIDEQDEEEDLRR 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ TR FI+H+RKA L G+SP ENR +PPL Y Y L P L LNGGI
Sbjct: 152 FIEVVAGAGCTR-FIVHARKAWLKGLSPKENREVPPLDYARVYRLKAAHPGLEIVLNGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+ A L VM+GRAAYQNP L VD I+G + TR + Y +
Sbjct: 211 ETIDDARAHLDH-VDGVMLGRAAYQNP-AILADVDRVIFGVEAESPTRAAALNAIVPYVE 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
L G + +V + +L +H +P F+R L I +
Sbjct: 269 QHLSRGGR----LSNVTRHVLGLYHGQPRGKAFRRHLSEGATLASATADVLRAAIALV 322
>gi|239815113|ref|YP_002944023.1| tRNA-dihydrouridine synthase A [Variovorax paradoxus S110]
gi|239801690|gb|ACS18757.1| TIM-barrel protein, yjbN family [Variovorax paradoxus S110]
Length = 333
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + + + T +PV+VK RIG+D +SY + D
Sbjct: 99 NCGCPSERVQ-RGAFGACLMAEPALVADCVKAMVDATRLPVTVKHRIGIDKIESYEFVRD 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS + R FI+H+R A L G+SP +NR IPPL+YE + L +FP+L F++NGGI
Sbjct: 158 FVGAVSE-AGCRGFIVHARNAWLQGLSPKQNREIPPLRYELVHRLKHEFPELDFSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQV 173
+ +V+ LR VMVGR AY NPW+ L D YGA LTR V
Sbjct: 217 SASAQVHEHLRL-LDGVMVGREAYHNPWW-LAEWDAEFYGAVPQPLTREDV 265
>gi|354564760|ref|ZP_08983936.1| TIM-barrel protein, yjbN family [Fischerella sp. JSC-11]
gi|353549886|gb|EHC19325.1| TIM-barrel protein, yjbN family [Fischerella sp. JSC-11]
Length = 346
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 129/243 (53%), Gaps = 8/243 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V + ++ + T +PVSVK RIG+DD D Y + +
Sbjct: 104 NVGCPSSRVQD-GNFGACLMAHPEKVADCVAEMINATRIPVSVKHRIGIDDRDRYEDMEN 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS R F +H+RKA L G+SP ENR IPPL+Y Y L ++FP L +NGGI
Sbjct: 163 FVRIVSQAGCQR-FTVHARKAWLQGLSPKENRDIPPLRYGDVYRLKQEFPHLFIEINGGI 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++V L + VM+GRAAY +P Y D+ IYG L+R +V E Y D
Sbjct: 222 LNMEQVKEHL-QSVDAVMIGRAAYDHP-YLFATADSEIYGEAMQPLSRHEVAEAMLAYID 279
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ + + + +L F +PG+ ++KR + ++E + +P+
Sbjct: 280 YWVA----KGLKLNKITRHMLQLFAGQPGSRVWKRHLTENSCYLGAGSAVVQEALAQVPN 335
Query: 243 SVL 245
S L
Sbjct: 336 SPL 338
>gi|261415030|ref|YP_003248713.1| yjbN family TIM-barrel protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385789988|ref|YP_005821111.1| tRNA-dihydrouridine synthase A [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371486|gb|ACX74231.1| TIM-barrel protein, yjbN family [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302326032|gb|ADL25233.1| tRNA-dihydrouridine synthase A [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 345
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 100/160 (62%), Gaps = 4/160 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G FG LM + V + + ++PVS+KCRIGVDD DS+ D
Sbjct: 94 NCGCPSDRVQ-NGNFGACLMKEKNVVADCFKAMQDAVSIPVSIKCRIGVDDLDSWEFFTD 152
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + + FI+H+RKA L G+SP ENR +PPL YE+ + L + P+L ++NGGI
Sbjct: 153 FIQTVRD-AGCKIFIVHARKAWLKGLSPKENREVPPLHYEFVHRLKAEMPELNLSINGGI 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 162
T+D++ L K VMVGR AY+NPW+ L D I+G
Sbjct: 212 KTLDQIEEQL-KDLDGVMVGREAYENPWF-LHDADARIFG 249
>gi|422024011|ref|ZP_16370512.1| tRNA-dihydrouridine synthase A [Providencia sneebia DSM 19967]
gi|414091411|gb|EKT53096.1| tRNA-dihydrouridine synthase A [Providencia sneebia DSM 19967]
Length = 342
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 99/159 (62%), Gaps = 3/159 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM D + V + + + ++PV+VK RIG+D+ DSY LC+
Sbjct: 108 NVGCPSDRVQ-NGRFGACLMADAQLVADCIKAMKDVVSIPVTVKTRIGIDEQDSYEFLCE 166
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V++ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+
Sbjct: 167 FIDTVATKGNCEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMAINGGV 226
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 161
T++E LR VMVGR AYQNP L VD ++
Sbjct: 227 KTLEEAKEHLRH-LDGVMVGREAYQNP-SILTAVDNQLF 263
>gi|389809799|ref|ZP_10205496.1| tRNA-dihydrouridine synthase A [Rhodanobacter thiooxydans LCS2]
gi|388441514|gb|EIL97783.1| tRNA-dihydrouridine synthase A [Rhodanobacter thiooxydans LCS2]
Length = 327
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 121/215 (56%), Gaps = 10/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P V + + + +VPV+VKCRIGVDD D+Y L
Sbjct: 96 NVGCPSDRVQS-GRFGACLMREPALVADCVKAMRDAVSVPVTVKCRIGVDDQDAYADLQQ 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F + + ++H+RKA L G+SP ENR +PPL YE Y L R+FP L +NGGI
Sbjct: 155 FTGLMLE-AGVGVLVVHARKAWLKGLSPKENREVPPLDYERVYRLKREFPQLVVVINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
TV +V A L + VM+GRAAY +P Y L ++ A++G P R V+++ + Y +
Sbjct: 214 TTVAQVRAHLTR-LDGVMLGRAAYHDP-YLLAQLEHALHGEPLP--DRDSVLQRLRPYVE 269
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L G H+ + LL + EPG F+R
Sbjct: 270 AELAR-GTALKHIS---RHLLGLYQGEPGARAFRR 300
>gi|386017996|ref|YP_005936297.1| tRNA-dihydrouridine synthase A DusA [Pantoea ananatis AJ13355]
gi|327396079|dbj|BAK13501.1| tRNA-dihydrouridine synthase A DusA [Pantoea ananatis AJ13355]
Length = 331
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 123/244 (50%), Gaps = 11/244 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY L D
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMAEAGLVADGIKAMRDVVDIPVTVKTRIGIDDQDSYAFLTD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGG+
Sbjct: 152 FIGTVAERGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTIAINGGV 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L+ VM+GR AYQNP L VD ++G + VV Y +
Sbjct: 212 KTLGEAKTHLQH-LDGVMMGREAYQNPG-ILAQVDRELFGRDRPAVDPVAVVRAMYPYIE 269
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
A L GTY + V + +L F PG ++R LE + +
Sbjct: 270 AELSKGTYLGH------VTRHMLGLFQGIPGARQWRRHLSENAHKPGADVRVLEAALALV 323
Query: 241 PDSV 244
D +
Sbjct: 324 ADKI 327
>gi|82753060|ref|XP_727524.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483411|gb|EAA19089.1| Uncharacterized protein family UPF0034, putative [Plasmodium yoelii
yoelii]
Length = 531
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 153/306 (50%), Gaps = 47/306 (15%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS KVA G FG LM +P+ V + I +PV+VK R GVD+ DS++ L
Sbjct: 240 NVGCPSTKVANKGAFGAYLMKNPQLVKNIVYEIKKKVQIPVTVKIRTGVDNLDSFSFLRS 299
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VSS + HFIIHSRKA L G+ P +NR+IPPL+Y + L + +P + FTLNGGI
Sbjct: 300 FIETVSS-AGCDHFIIHSRKAWLKGLDPKQNRSIPPLEYNKVFDLCKLYPHIKFTLNGGI 358
Query: 123 NTVDEVNAALR--------KGAHH--------------------VMVGRAAYQNPWYTLG 154
++++ A L G H+ VM+GRA +N L
Sbjct: 359 KSIEQGVALLNGYAPINNMSGKHNNSTDNNYIKIEDYDINPLYGVMIGRACMENIT-VLA 417
Query: 155 HVDTAIYG--APSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 212
D +Y +PS+ +RR V++ Y+ Y + Y + +++KP+L PG+
Sbjct: 418 KTDKLVYNYDSPSTAHSRRTVLDAYKFYLEQNSSFY--TLVNAFELLKPILGILKGMPGH 475
Query: 213 GLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPYK 272
LF+ K D+ + + + + +LD +E+ +++ DL+ YK
Sbjct: 476 RLFRNKIDSYIRKYASTLNCAQ---------ILDKAMEDV----DNIAPGCLDLILDDYK 522
Query: 273 AREQEV 278
A+++ +
Sbjct: 523 AQQEYI 528
>gi|329849777|ref|ZP_08264623.1| tRNA-dihydrouridine synthase A [Asticcacaulis biprosthecum C19]
gi|328841688|gb|EGF91258.1| tRNA-dihydrouridine synthase A [Asticcacaulis biprosthecum C19]
Length = 340
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 116/215 (53%), Gaps = 9/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM DP+ V + M + + +P +VKCRIGVDD D + L
Sbjct: 92 NCGCPSDRVQS-GAFGACLMRDPQLVADGMQAMIEASKLPATVKCRIGVDDQDPRDALFT 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+ T FI+H+RKA L G+SP ENR IPPL YE Y L R PDL ++NGGI
Sbjct: 151 LVEACRKAGVTT-FIVHARKAWLKGLSPKENRDIPPLDYELVYELKRSHPDLFISINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+D+ L+ VM+GRAAY P LG VDT+++G S + + ++ Y+ Y
Sbjct: 210 ANLDDAQRHLQH-VDGVMLGRAAYHEP-ALLGQVDTSVFGG-SKDVAPFEALDAYRPY-- 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
I P + + + +L H PG F+R
Sbjct: 265 -IAARLDEGVP-LTHMTRHILGLMHGLPGARAFRR 297
>gi|313678961|ref|YP_004056700.1| tRNA-u16,u17-dihydrouridine synthase [Oceanithermus profundus DSM
14977]
gi|313151676|gb|ADR35527.1| tRNA-U16,U17-dihydrouridine synthase [Oceanithermus profundus DSM
14977]
Length = 321
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 9/225 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPSP+V G FGV LM P+ V E + + T V ++VK R+G+D+ D Y L
Sbjct: 90 NVGCPSPRVQA-GGFGVVLMRRPERVAEIVRAVHQETGVRMTVKHRVGLDEDDDYAFLAR 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V + + + F++H+RKA G+ P NRT+PPL++ Y L RDFP+LT NGG+
Sbjct: 149 FV-EVVAAAGVQVFVVHARKAWTEGLDPKANRTVPPLEHAKVYRLKRDFPELTIVTNGGV 207
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+E A L + VMVGRA + PW D ++G + RR V+E+Y+ Y
Sbjct: 208 ADPEEARAHL-EHVDGVMVGRAMWDRPW-RWASADRVLWG-DARVPDRRTVLERYEAY-- 262
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCK 227
+ P +R +++PL + F EPG ++R DAA + +
Sbjct: 263 -LHERLAEGVP-LRALVRPLFNLFKGEPGGRRWRRTLDAALRAGR 305
>gi|400406132|ref|YP_006588880.1| tRNA dihydrouridine synthase A [secondary endosymbiont of
Heteropsylla cubana]
gi|400364385|gb|AFP85452.1| tRNA dihydrouridine synthase A [secondary endosymbiont of
Heteropsylla cubana]
Length = 344
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 123/215 (57%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS ++ G FG LM + + V +S + N+P++VK RIG+D++DSY+ L +
Sbjct: 111 NVGCPSNRMK-KGFFGAYLMNEKEQVANCVSAMREAVNLPITVKTRIGIDENDSYSFLSE 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS+ + F+IH+RKA LNG SP +NR IPPL YE Y L +DFP + F LNGGI
Sbjct: 170 FVDTVSTKGGCKTFVIHARKAYLNGFSPKKNREIPPLNYERVYKLKQDFPSIRFVLNGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ + LRK VM+GR Y+NP L VD+ +G R+++ EK Y D
Sbjct: 230 VNLYDALQHLRK-CDGVMIGREVYRNP-SILMKVDSIFFGKLDPVTNRKEIFEKILPYID 287
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + G + H + + +L F PG G ++R
Sbjct: 288 NEL-SQGTSLNH---ITRHMLGLFQGLPGAGHWRR 318
>gi|329296553|ref|ZP_08253889.1| TIM-barrel protein, yjbN family [Plautia stali symbiont]
Length = 331
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 118/217 (54%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMGEAALVADCIKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ FIIH+RKA L+G+SP EN IPPL Y Y L RDFP LT +NGGI
Sbjct: 152 FVGTVAQQGGCDTFIIHARKAWLSGLSPKENSEIPPLDYPRVYQLKRDFPALTVAINGGI 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE A L+ VM+GR AYQNP L VD ++G + VV Y +
Sbjct: 212 KTLDEAKAHLQH-LDGVMMGREAYQNPG-ILAQVDRQLFGRETPVADPVAVVRSMYPYIE 269
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 270 VELAQGTY------LGHITRHMLGLFQGIPGARQWRR 300
>gi|27378845|ref|NP_770374.1| tRNA-dihydrouridine synthase A [Bradyrhizobium japonicum USDA 110]
gi|27351994|dbj|BAC48999.1| blr3734 [Bradyrhizobium japonicum USDA 110]
Length = 331
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 115/215 (53%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V + + VPV+VKCRIG+DD D L D
Sbjct: 92 NVGCPSDRVK-DGRFGACLMAEPELVARCVDAMKRAVAVPVTVKCRIGIDDQDPEVAL-D 149
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+ + + I+H+RKA LNG+SP ENR IPPL YE Y L R PD+ +NGGI
Sbjct: 150 TLARAVVAAGCDALIVHARKAWLNGLSPKENRDIPPLDYERVYRLKRAMPDVPVIINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+DE A L VM+GRAAYQ PW L VD+ I+G + T + +E Y +
Sbjct: 210 PGIDEAKAHLEH-VDGVMLGRAAYQEPWRLLS-VDSDIFGETAPHATMQDALEAMMPYIE 267
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L R H + + + FH+ PG F+R
Sbjct: 268 AQLAR--GTRLHA--ITRHFVGAFHAVPGARAFRR 298
>gi|422807140|ref|ZP_16855571.1| tRNA dihydrouridine synthase A [Escherichia fergusonii B253]
gi|324112315|gb|EGC06293.1| tRNA dihydrouridine synthase A [Escherichia fergusonii B253]
Length = 333
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 119/219 (54%), Gaps = 13/219 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G++P ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLNPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY-- 180
+++E L+ VMVGR AYQNP L VD I+ + + V +Y
Sbjct: 216 KSLEEAKMHLQH-MDGVMVGREAYQNPG-ILSAVDREIFASTDTDTDADPVAVVRAMYPY 273
Query: 181 --GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ GTY + + + +L F PG ++R
Sbjct: 274 IERELSQGTY------LGHITRHMLGLFQGIPGARQWRR 306
>gi|380510524|ref|ZP_09853931.1| tRNA-dihydrouridine synthase A [Xanthomonas sacchari NCPPB 4393]
Length = 339
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 122/220 (55%), Gaps = 20/220 (9%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V E ++ + ++PV+VKCR+GVD D Y
Sbjct: 104 NCGCPSDRVQA-GRFGACLMREPALVAECVAAMVEAVDIPVTVKCRLGVDQDDDYAVFLA 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V++ + F++H+R A L G+SP ENR +PPL+Y++ + L R+ P L LNGG+
Sbjct: 163 FVDQVAA-AGCELFVVHARNAWLQGLSPKENREVPPLRYDWAHRLKRERPQLQVVLNGGL 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGA---PSSGLTR--RQVVEKY 177
V+ A L + VM+GRAAY +P Y L +D A+ GA P + L R R VE
Sbjct: 222 AAVETAQAQL-QAVDGVMLGRAAYHDP-YVLHRLDAALTGAALRPRAELLRALRPYVEAR 279
Query: 178 QIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
G A+ + + + LL FH +PG F++
Sbjct: 280 LAEGLAL-----------KHITRHLLGLFHGQPGGRAFRQ 308
>gi|212710291|ref|ZP_03318419.1| hypothetical protein PROVALCAL_01350 [Providencia alcalifaciens DSM
30120]
gi|422020548|ref|ZP_16367086.1| tRNA-dihydrouridine synthase A [Providencia alcalifaciens Dmel2]
gi|212687098|gb|EEB46626.1| hypothetical protein PROVALCAL_01350 [Providencia alcalifaciens DSM
30120]
gi|414101185|gb|EKT62786.1| tRNA-dihydrouridine synthase A [Providencia alcalifaciens Dmel2]
Length = 341
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 99/159 (62%), Gaps = 3/159 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM D + V + + + ++PV+VK RIG+D+ DSY LC+
Sbjct: 107 NVGCPSDRVQ-NGRFGACLMADAQLVADCVKAMRDVVSIPVTVKTRIGIDEQDSYEFLCE 165
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS+ FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 166 FIDTVSTKGDCEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMAINGGI 225
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 161
T++E L K VMVGR AYQNP L VD ++
Sbjct: 226 KTLEEAKEHL-KYLDGVMVGREAYQNP-SILTAVDNQLF 262
>gi|406937212|gb|EKD70739.1| hypothetical protein ACD_46C00424G0003 [uncultured bacterium]
Length = 317
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 124/215 (57%), Gaps = 10/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LML+P V E ++ + + +PV+VKCRIGVD DSY L
Sbjct: 90 NVGCPSNRVKA-GRFGACLMLEPDLVAECVAAMHSAVKIPVTVKCRIGVDQQDSYAALVQ 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV+ + F+IH+RKA L GISP +NR IPPL+Y+ + +DFP ++ +NGGI
Sbjct: 149 FIEKVAQ-AGCHIFVIHARKAWLTGISPKQNRDIPPLQYDIVKNIKQDFPHVSIIMNGGI 207
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ ++ L+ VM+GR AY NP++ L ++ + S LTR +++K+ Y
Sbjct: 208 KTLHDIQRHLQY-VDGVMIGREAYANPYF-LAAIEEQFFA--KSVLTRHTIIKKFIPYIQ 263
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L N+ + + + +L + + G +++R
Sbjct: 264 VQL----RNKVKLSSITRHILGLYQGQKGARIWRR 294
>gi|226326586|ref|ZP_03802104.1| hypothetical protein PROPEN_00436 [Proteus penneri ATCC 35198]
gi|225205011|gb|EEG87365.1| tRNA dihydrouridine synthase A [Proteus penneri ATCC 35198]
Length = 344
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 98/159 (61%), Gaps = 3/159 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM D + V + + ++PV+VK RIG+DD DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGRFGACLMGDAQLVANCVKAMRDVVDIPVTVKTRIGIDDQDSYEFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS + FIIH+RKA L+G+SP ENR +PPL Y Y L RDF LT +NGGI
Sbjct: 170 FIETVSRDNNCDTFIIHARKAWLSGLSPKENREVPPLDYPRVYQLKRDFSHLTMAINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 161
+++E L K VMVGR AYQNP L HVD ++
Sbjct: 230 KSLEEAKEHL-KHMDGVMVGREAYQNP-SILAHVDHELF 266
>gi|259418773|ref|ZP_05742690.1| tRNA-dihydrouridine synthase A [Silicibacter sp. TrichCH4B]
gi|259344995|gb|EEW56849.1| tRNA-dihydrouridine synthase A [Silicibacter sp. TrichCH4B]
Length = 336
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P+ V + M+ +A +V V+VKCRIGVDD + + L +
Sbjct: 101 NCGCPSDRVQS-GAFGAILMQSPELVADCMAAMAQAVDVEVTVKCRIGVDDQNPQDVLPE 159
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K+ + R IH+RKA L G+SP ENR IPPL YE + + FPD+ ++NGGI
Sbjct: 160 FLEKIRAAGVDR-VTIHARKAWLKGLSPKENRDIPPLDYELVHQMKASFPDMHISINGGI 218
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ A L +G VM+GRAAY P L D I+G +V + + D
Sbjct: 219 ATLEDAQAQLARGLDGVMIGRAAYHQPADVLCAADPRIFGTG-------EVTDPVSVVQD 271
Query: 183 AI--LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + + +L F PG ++R
Sbjct: 272 MLPYIEREMQQGARLHQISRHMLGLFAGRPGARQWRR 308
>gi|326317525|ref|YP_004235197.1| yjbN family TIM-barrel protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323374361|gb|ADX46630.1| TIM-barrel protein, yjbN family [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 320
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIG+ + Y + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPRLVADCVKAMVDAVSVPVTVKHRIGIGRSEEYAFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + R FI+H+R A L G+SP ENR IPPL+Y+ + L +FPDL +NGG+
Sbjct: 139 FVGTVAE-AGCRVFIVHARNAWLEGLSPKENREIPPLRYDVVHRLKAEFPDLVIAINGGL 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T D V AL G M+GR AY NPW+ L D +G +SGLTR E Y
Sbjct: 198 ATDDAVQEALGGGLDGAMIGREAYHNPWW-LARWDALYFGDAASGLTREAAEEAMVDY 254
>gi|397166048|ref|ZP_10489494.1| tRNA dihydrouridine synthase A family protein [Enterobacter
radicincitans DSM 16656]
gi|396092210|gb|EJI89774.1| tRNA dihydrouridine synthase A family protein [Enterobacter
radicincitans DSM 16656]
Length = 339
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 98/160 (61%), Gaps = 3/160 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 105 NVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y L RDFP L +NGGI
Sbjct: 164 FIGTVAGKGECESFTIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLKMAINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 162
+++E A L+ VMVGR AYQNP L VD IYG
Sbjct: 224 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIYG 261
>gi|350564037|ref|ZP_08932856.1| TIM-barrel protein, yjbN family [Thioalkalimicrobium aerophilum
AL3]
gi|349778037|gb|EGZ32396.1| TIM-barrel protein, yjbN family [Thioalkalimicrobium aerophilum
AL3]
Length = 351
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 120/220 (54%), Gaps = 12/220 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P+ V ++++ + A +PV+VKCRIG+DD + Y L D
Sbjct: 99 NVGCPSDRVQNN-LIGACLMAHPQLVADSVAAMKAAVTIPVTVKCRIGIDDQEDYQTLAD 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI + + +IH+RKA L G+SP ENR +PPL Y + + + DF DL ++NGG+
Sbjct: 158 FIAGLVK-AGVDGVVIHARKAWLQGLSPKENRDVPPLNYAWVHQIKADFADLAISINGGL 216
Query: 123 NTVDEVNAALRK-----GAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKY 177
T+ + + L VM+GRA Y+NP Y L VD Y P ++R +V+E
Sbjct: 217 KTLVDAKSHLSTYDNLPAVDGVMMGRAIYENP-YLLAEVDGLFYADPKPAISRAEVLEAI 275
Query: 178 QIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
Y +A L G + + + ++ FH PG L++R
Sbjct: 276 YPYIEAHLQAGG----RLSHITRHMMGLFHGCPGGRLWRR 311
>gi|107022641|ref|YP_620968.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia AU 1054]
gi|116689590|ref|YP_835213.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia HI2424]
gi|105892830|gb|ABF75995.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia cenocepacia AU
1054]
gi|116647679|gb|ABK08320.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia cenocepacia
HI2424]
Length = 365
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 121/217 (55%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 117 NCGCPSERVQ-RGAFGACLMNEPQLVADCVRAMRDAVSVPVTVKHRIGVDAVEDYAFVRD 175
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + F++H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 176 FVGTVAE-AGCETFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPSLEIVINGGI 234
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L VM+GR AY NP Y L VD YG+ ++ R + + Y
Sbjct: 235 TTLDEVAQHLEH-VDGVMLGREAYHNP-YVLAEVDARFYGSTAAVPMREEAEAQLIEYCA 292
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L GTY + +++ L + PG ++R
Sbjct: 293 AELKRGTY------LGAIVRHALGLYRGMPGARGWRR 323
>gi|410632529|ref|ZP_11343187.1| tRNA-dihydrouridine synthase A [Glaciecola arctica BSs20135]
gi|410147955|dbj|GAC20054.1| tRNA-dihydrouridine synthase A [Glaciecola arctica BSs20135]
Length = 337
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V +S + A ++PV+VK RIG+DD D Y L
Sbjct: 92 NVGCPSDRVQ-NGRFGACLMAEPETVAACISSMQAEVDIPVTVKSRIGIDDMDEYEDLTR 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + S FI+H+RKA L G+SP +NR +PPL Y+ Y L + FPDL +LNGG+
Sbjct: 151 FI-DVVAASGCDTFIVHARKAWLKGLSPKQNRDVPPLMYDRVYQLKQQFPDLHISLNGGV 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+V L VM+GR Y NP Y L VD Y + TR +VV Y +
Sbjct: 210 KTLDDVQLHLNY-LDGVMIGREVYSNP-YILAEVDNRFYQDNAVIKTRAEVVMSMLPYVE 267
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ RP + + +L F +PG +++R
Sbjct: 268 QQIAL--GARPW--HIARHMLGLFQGQPGGRIWRR 298
>gi|21233367|ref|NP_639284.1| tRNA-dihydrouridine synthase A [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66770330|ref|YP_245092.1| tRNA-dihydrouridine synthase A [Xanthomonas campestris pv.
campestris str. 8004]
gi|38604922|sp|Q8P3X4.1|DUSA_XANCP RecName: Full=tRNA-dihydrouridine synthase A
gi|21115203|gb|AAM43166.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66575662|gb|AAY51072.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 335
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 123/215 (57%), Gaps = 10/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + ++ + A T +PV+VKCR+GVDD D Y
Sbjct: 99 NCGCPSDRVQA-GRFGACLMREPALVADCVAAMCAATALPVTVKCRLGVDDDDDYAVFAG 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V ++H+R A L G+SP ENR +PPL+Y++ Y L ++ P L LNGGI
Sbjct: 158 FIDQVVGAGAAM-VVVHARNAWLKGLSPKENREVPPLRYDWAYRLKQERPALPVVLNGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+V+ A L+ VM+GRAAY +P Y L ++ A+ G P R +++ YQ Y
Sbjct: 217 ASVEASLAHLQH-TDGVMLGRAAYHDP-YVLHQLEAALSGRPER--ARADLLQAYQPYVQ 272
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + ++ + + +L FH +PG +F++
Sbjct: 273 AQL----DQGLALKHMTRHILGLFHGQPGGRVFRQ 303
>gi|340788618|ref|YP_004754083.1| tRNA-dihydrouridine synthase A [Collimonas fungivorans Ter331]
gi|340553885|gb|AEK63260.1| tRNA-dihydrouridine synthase A [Collimonas fungivorans Ter331]
Length = 338
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 124/218 (56%), Gaps = 7/218 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM + + V + + + ++ V+VK RIG+D +SY + D
Sbjct: 97 NCGCPSERVQ-KGAFGACLMAEAELVADCVKAMRDAVSIDVTVKHRIGIDKTESYEFVRD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + + FI+H+R A+L G+SP ENR IPPLKYEY Y L RDFP+L +NG I
Sbjct: 156 FVGTVAQ-AGCQTFIVHARNAILKGLSPKENREIPPLKYEYAYQLARDFPELEIIINGAI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSG-LTRRQVVEKYQIYG 181
T +E++ L+ VM+GR AY NP Y + D+ YGA + TR +V+E Y
Sbjct: 215 KTTEEIDFHLQY-VDGVMLGREAYHNP-YLMADFDSRYYGAADAAPKTRAEVIEAMLPYI 272
Query: 182 DAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKR 217
L +G++ +R + + +L PG F++
Sbjct: 273 RQQLALHGHDGKGLRLNSITRHMLGLMAGVPGAKSFRQ 310
>gi|408792502|ref|ZP_11204112.1| tRNA dihydrouridine synthase A [Leptospira meyeri serovar Hardjo
str. Went 5]
gi|408463912|gb|EKJ87637.1| tRNA dihydrouridine synthase A [Leptospira meyeri serovar Hardjo
str. Went 5]
Length = 323
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 125/235 (53%), Gaps = 8/235 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM DP V E + VPV+VK RIGV+ +SY L
Sbjct: 95 NVGCPSDRVQS-GSFGACLMKDPDLVAEMVFACKGKVKVPVTVKHRIGVNGKESYEDLHH 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K+++ + H I+H+R A+L G+SP ENRT+PPL+YE Y L DFPDL T+NGGI
Sbjct: 154 FVSKINA-AGVDHSIVHARIAILEGLSPKENRTVPPLRYEDVYRLKTDFPDLPITINGGI 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T E+ L K VM+GRAAY NP Y VD YG+ + +R V+ + Y
Sbjct: 213 KTHSEIKEHLMK-VDGVMIGRAAYDNP-YMFYEVDQLYYGSKENPPSREDVLRELIPYIR 270
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETI 237
+ L G V +++ +L + E G +++ +S LE+ +
Sbjct: 271 SSLARDGK----VHHILRHILGLYFGERGAREYRKFLTDRMHLSGANESILEDYL 321
>gi|260428471|ref|ZP_05782450.1| tRNA-dihydrouridine synthase A [Citreicella sp. SE45]
gi|260422963|gb|EEX16214.1| tRNA-dihydrouridine synthase A [Citreicella sp. SE45]
Length = 372
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 110/215 (51%), Gaps = 6/215 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P+ V + ++ + T V V+VKCRIGVDD L
Sbjct: 137 NCGCPSDRVQS-GTFGAVLMKTPELVADCVAAMQEATAVEVTVKCRIGVDDQKPREVLPA 195
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + R IH+RKA L G+SP ENR IPPL Y + + FPDL +LNGG+
Sbjct: 196 FIDKVRG-AGCRRIAIHARKAWLQGLSPKENREIPPLDYAIVHEMKAAFPDLHVSLNGGV 254
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ V L +G VMVGRAAY PW L D I+G + ++ Y +
Sbjct: 255 ESLATVEKLLDEGLDGVMVGRAAYHQPWDILAEADARIWGEERETPSPEEIARAMLPYIE 314
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + V + +L F PG ++R
Sbjct: 315 RHLSDGGK----LHQVTRHMLGLFAGRPGARGWRR 345
>gi|339053234|ref|ZP_08647986.1| tRNA dihydrouridine synthase A [gamma proteobacterium IMCC2047]
gi|330721563|gb|EGG99595.1| tRNA dihydrouridine synthase A [gamma proteobacterium IMCC2047]
Length = 351
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 118/215 (54%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P+ V + + N+PV+VK RIG+DD DSY L
Sbjct: 121 NVGCPSDRVQ-NGAFGACLMAKPELVAACLESMQRAVNIPVTVKHRIGIDDLDSYELLQR 179
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI ++ S S FIIH+RKA L G+SP ENR IPPLKY++ Y + FP L +NGGI
Sbjct: 180 FI-EIVSHSGCSTFIIHARKAFLQGLSPKENRDIPPLKYDWVYQIKEQFPHLEIIINGGI 238
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ E L + VM+GR AY NP Y+L D ++ +R +++++ Y +
Sbjct: 239 KSLTESQKHLEQ-VDGVMIGREAYHNP-YSLAQADAQLFDDHHQIASRHDILQQFLPYIE 296
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + + K +L FH +PG F++
Sbjct: 297 QQL----TQDVRLTHISKHILGLFHGQPGGRKFRQ 327
>gi|124506924|ref|XP_001352059.1| dihydrouridine synthase, putative [Plasmodium falciparum 3D7]
gi|23505088|emb|CAD51870.1| dihydrouridine synthase, putative [Plasmodium falciparum 3D7]
Length = 577
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 140/291 (48%), Gaps = 40/291 (13%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS KVA G FG SLM +P+ V + I +PV+VK R GVD++DS++ L
Sbjct: 286 NVGCPSTKVANKGAFGASLMKNPEQVRNIVYEIKKKVQIPVTVKIRTGVDNYDSFDFLKT 345
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VSS+ HFI+H+RKA L G+ P +NR IPPL+Y Y L + +P L FTLNGGI
Sbjct: 346 FIETVSSVG-CNHFIVHARKAWLKGLDPKQNRKIPPLEYYKVYDLCKLYPHLKFTLNGGI 404
Query: 123 NTVDEVNAALR----------------------------KGAHHVMVGRAAYQNPWYTLG 154
T+ E A L + +M+GRA +N L
Sbjct: 405 QTIQEAIALLNGYMPENYNNNNNNNNDTSNFIQIDNYNINPLNGIMIGRACMENIT-VLS 463
Query: 155 HVDTAIYGA--PSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 212
D +Y PS+ +RR ++E Y+ Y + Y N +++KP+L PG+
Sbjct: 464 QTDKLVYNQDIPSTAYSRRTILEAYKKYLEKNSLFY--NLSSSFELLKPVLGILKGMPGH 521
Query: 213 GLFKRKADAAFQTCKTV---KSFLEETIVA---IPDSVLDSPIEEAPRGRE 257
+F+ K D + + LE+ I I LD P+ + +E
Sbjct: 522 RIFRNKLDTYIRNYTSTLPCSEILEKAIADVDHIAPGCLDLPLHDYNLQKE 572
>gi|410640945|ref|ZP_11351471.1| tRNA-dihydrouridine synthase A [Glaciecola chathamensis S18K6]
gi|410139510|dbj|GAC09658.1| tRNA-dihydrouridine synthase A [Glaciecola chathamensis S18K6]
Length = 303
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +PK V + ++ + ++PV+VK RIG+DD D Y L D
Sbjct: 53 NVGCPSDRVQ-NGRFGACLMAEPKTVADCINAMQKEVDIPVTVKSRIGIDDMDEYKDLTD 111
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ + F +H+RKA L G+SP ENR IPPL Y+ YAL +FP L ++NGG+
Sbjct: 112 FIQVVAD-AGCEIFTVHARKAWLKGLSPKENRDIPPLMYDRVYALKEEFPHLNLSINGGV 170
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+ L K VM+GR Y NP Y L VD Y + +R ++V Y +
Sbjct: 171 KTLDDAALHLDK-LDGVMIGREVYSNP-YILADVDKRFYQDQTPVPSREEIVHAMLPYVE 228
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + ++ + +L F +PG +++R
Sbjct: 229 KQMASGA----RAWNIARHMLGLFQGQPGGRVWRR 259
>gi|126725475|ref|ZP_01741317.1| tRNA-dihydrouridine synthase A [Rhodobacterales bacterium HTCC2150]
gi|126704679|gb|EBA03770.1| tRNA-dihydrouridine synthase A [Rhodobacterales bacterium HTCC2150]
Length = 337
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 119/220 (54%), Gaps = 16/220 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P V E +S + A NV ++VKCRIGVDD D L +
Sbjct: 101 NCGCPSDRVQS-GYFGAVLMAKPDLVAECVSEMKAAANVEITVKCRIGVDDQDPQTVLPN 159
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KVS+ TR F IH+RKA L G+SP ENR IPPL Y+ + + +FP L ++NGG+
Sbjct: 160 FLAKVSAAGVTR-FTIHARKAWLQGLSPKENRDIPPLDYDIVHQMKAEFPHLHISINGGV 218
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY------GAPSSGLTRRQVVEK 176
T+++ + + +G VM+GRAAY P L D I+ G ++ T +E
Sbjct: 219 TTLEQASGLIEQGLDGVMIGRAAYHQPADILCDADELIFSDEKGQGVDAAIQTMLPYIEN 278
Query: 177 YQIYGDAI-------LGTYGNNRPHVRDVMKPLLHFFHSE 209
+ + G + LG + +P R + L F H +
Sbjct: 279 HLLKGGRLNQITRHMLGAFA-GKPGARRWRRHLSEFAHKD 317
>gi|431931535|ref|YP_007244581.1| tRNA dihydrouridine synthase A [Thioflavicoccus mobilis 8321]
gi|431829838|gb|AGA90951.1| tRNA dihydrouridine synthase A [Thioflavicoccus mobilis 8321]
Length = 345
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 122/215 (56%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P VG+ ++ + A +PV+ K RIG+DD DSY +L
Sbjct: 115 NLGCPSDRVQS-GRFGACLMAEPALVGDCIAAMKAAAAIPVTAKLRIGIDDRDSYEELVA 173
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + + I+H+RKA L G+SP ENR IPPL+Y++ Y L +FPD+ LNGG+
Sbjct: 174 FVSNLVE-AGCDALIVHARKAWLKGLSPRENREIPPLRYDWVYRLKGEFPDVPIALNGGV 232
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++D+ L + +M+GRAAYQ+PW L D I+G P T QV+E Y +
Sbjct: 233 ASLDQAVDILTR-VDGLMIGRAAYQDPWL-LAEADRLIFGDPHPVPTPHQVLEALIPYVE 290
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + P ++ + + LL F PG ++R
Sbjct: 291 RQL---ADGVP-LKSITRHLLGLFQGRPGARAWRR 321
>gi|188993527|ref|YP_001905537.1| tRNA-dihydrouridine synthase A [Xanthomonas campestris pv.
campestris str. B100]
gi|167735287|emb|CAP53501.1| Putative dihydrouridine synthase [Xanthomonas campestris pv.
campestris]
Length = 366
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 123/215 (57%), Gaps = 10/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + ++ + A T +PV+VKCR+GVDD D Y
Sbjct: 130 NCGCPSDRVQA-GRFGACLMREPALVADCVAAMCAATALPVTVKCRLGVDDDDDYAVFAG 188
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V ++H+R A L G+SP ENR +PPL+Y++ Y L ++ P L LNGGI
Sbjct: 189 FIDQVVGAGAA-MVVVHARNAWLKGLSPKENREVPPLRYDWAYRLKQERPALPVVLNGGI 247
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+V+ A L+ VM+GRAAY +P Y L ++ A+ G P R +++ YQ Y
Sbjct: 248 ASVEASLAHLQH-TDGVMLGRAAYHDP-YVLHQLEAALSGRPER--ARADLLQAYQPYVQ 303
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + ++ + + +L FH +PG +F++
Sbjct: 304 AQL----DQGLALKHMTRHILGLFHGQPGGRVFRQ 334
>gi|428309830|ref|YP_007120807.1| tRNA-U16,U17-dihydrouridine synthase [Microcoleus sp. PCC 7113]
gi|428251442|gb|AFZ17401.1| tRNA-U16,U17-dihydrouridine synthase [Microcoleus sp. PCC 7113]
Length = 349
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 118/215 (54%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P+ V +A+ + N+PV+VK RIG+D+ D Y + +
Sbjct: 110 NVGCPSDRVQ-NGNFGACLMAQPERVAKAVEAMIEAVNIPVTVKHRIGIDECDRYEDMVN 168
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS R F +H+RKA L G+SP ENR IPPL+Y + L ++FP L +NGG
Sbjct: 169 FVRIVSDAGCQR-FTVHARKAWLQGLSPKENRDIPPLRYGDVHRLKQEFPHLFVEINGGF 227
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ +V L K VM+GRAAY NP Y D+ IYG + LTR +V E Y D
Sbjct: 228 TNLQQVKEQL-KLVDAVMIGRAAYDNP-YLFATADSEIYGEEGTPLTRHEVAEVMCSYID 285
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + +L F +PG+ +KR
Sbjct: 286 LWVA----KGLKLNKITRHMLQLFSGQPGSRAWKR 316
>gi|410645346|ref|ZP_11355812.1| tRNA-dihydrouridine synthase A [Glaciecola agarilytica NO2]
gi|410135118|dbj|GAC04211.1| tRNA-dihydrouridine synthase A [Glaciecola agarilytica NO2]
Length = 345
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 120/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +PK V + ++ + ++PV+VK RIG+DD D Y L D
Sbjct: 95 NVGCPSDRVQ-NGRFGACLMAEPKTVADCINAMQKEVDIPVTVKSRIGIDDMDEYKDLTD 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V + + F +H+RKA L G+SP ENR IPPL Y+ YAL +FP L ++NGG+
Sbjct: 154 FI-QVIADAGCEIFTVHARKAWLKGLSPKENRDIPPLMYDRVYALKEEFPHLNLSINGGV 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+ L K VM+GR Y NP Y L VD Y + +R ++V Y +
Sbjct: 213 KTLDDAALHLDK-LDGVMIGREVYSNP-YILADVDKRFYQDQTPVPSREEIVHAMLPYVE 270
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + ++ + +L F +PG +++R
Sbjct: 271 KQMASGA----RAWNIARHMLGLFQGQPGGRVWRR 301
>gi|332304623|ref|YP_004432474.1| yjbN family TIM-barrel protein [Glaciecola sp. 4H-3-7+YE-5]
gi|332171952|gb|AEE21206.1| TIM-barrel protein, yjbN family [Glaciecola sp. 4H-3-7+YE-5]
Length = 345
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 120/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +PK V + ++ + ++PV+VK RIG+DD D Y L D
Sbjct: 95 NVGCPSDRVQ-NGRFGACLMAEPKTVADCINAMQKEVDIPVTVKSRIGIDDMDEYKDLTD 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V + + F +H+RKA L G+SP ENR IPPL Y+ YAL +FP L ++NGG+
Sbjct: 154 FI-QVIADAGCEIFTVHARKAWLKGLSPKENRDIPPLMYDRVYALKEEFPHLNLSINGGV 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+ L K VM+GR Y NP Y L VD Y + +R ++V Y +
Sbjct: 213 KTLDDAALHLDK-LDGVMIGREVYSNP-YILADVDKRFYQDQTPVPSREEIVHAMLPYVE 270
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + ++ + +L F +PG +++R
Sbjct: 271 KQMASGA----RAWNIARHMLGLFQGQPGGRVWRR 301
>gi|340506873|gb|EGR32925.1| tRNA-dihydrouridine synthase a, putative [Ichthyophthirius
multifiliis]
Length = 322
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 130/239 (54%), Gaps = 8/239 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V + M + +P ++KCR+GVD+ D Y L
Sbjct: 70 NVGCPSDRVQC-GKFGACLMKEPETVSKIMQKMQQILKIPCTIKCRLGVDNLDQYEFLQK 128
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++S +HFI+H+R A+L G++P++NR +P LKY++ L +DFP + F++NGG
Sbjct: 129 FVQEISENGKVQHFIVHARIAILKGLTPSQNRIVPSLKYDFVLQLKQDFPHIDFSINGGF 188
Query: 123 NTVDEVNAALRKGAHHV--MVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T ++ L++ + + M+GR AY+NP++ VD Y + R+ ++ + Y
Sbjct: 189 KTFQQIENILKEENNLMGCMIGRLAYENPYF-FSDVDRRFYKQDNLNWNRKDILLIWGQY 247
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR--KADAAFQTCKTVKSFLEETI 237
G + N V + +P+L F E + +K+ F+ C ++F+ E I
Sbjct: 248 GKHQMKL--NKNLSVFILNRPILSLFQGEKHSSKYKQFISDKKNFEKCLDYENFIHEAI 304
>gi|254786572|ref|YP_003074001.1| tRNA-dihydrouridine synthase A [Teredinibacter turnerae T7901]
gi|237683391|gb|ACR10655.1| tRNA-dihydrouridine synthase A [Teredinibacter turnerae T7901]
Length = 338
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 123/216 (56%), Gaps = 9/216 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G G LM +P+ V + +S + A ++PV+VK RIGVDD D YN L
Sbjct: 99 NCGCPSDRVQ-EGKIGAVLMTEPELVAQCVSAMQAECDIPVTVKHRIGVDDQDEYNDLQR 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KV S + + FI+H+RKA L G+SP ENR IPPL YE L ++ L +NGGI
Sbjct: 158 FV-KVVSEAGCKRFIVHARKAWLKGLSPKENRDIPPLNYERVVQLKQEHTALDIVINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPS-SGLTRRQVVEKYQIYG 181
T+ + +A L + VM+GR AY NP Y L VD +YG+ + +TR +E++ +Y
Sbjct: 217 TTLSQCSALLSQ-LDGVMIGREAYHNP-YLLAGVDAELYGSDNIPPVTRDAALEQFVVYC 274
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ G H+ + +L + E G F+R
Sbjct: 275 REQIAA-GQKLHHMS---RHILGLYAGEYGARTFRR 306
>gi|156097374|ref|XP_001614720.1| tRNA-dihydrouridine synthase A [Plasmodium vivax Sal-1]
gi|148803594|gb|EDL44993.1| tRNA-dihydrouridine synthase A, putative [Plasmodium vivax]
Length = 509
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 142/278 (51%), Gaps = 35/278 (12%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS KVA G FG LM P+ V + I ++PVSVK R GVDD DS+ L F+
Sbjct: 225 GCPSTKVANKGAFGAYLMKKPEHVRNIVYEIKRKVHIPVSVKIRTGVDDCDSFPFLRSFV 284
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+SS+ + HFI+H+RKA L G+ P +NR++PPL+Y Y+L + +P L FTLNGG+ T
Sbjct: 285 ECISSVGCS-HFIVHARKAWLKGLDPKQNRSVPPLEYPKVYSLCQLYPHLKFTLNGGVKT 343
Query: 125 VDEVNAAL-----RKG------------------AHHVMVGRAAYQNPWYTLGHVDTAIY 161
V+E A L +KG H VM+GRA +N L D +Y
Sbjct: 344 VEEAVALLNGYLPKKGNVDSEKTYVQVKNYQVNPLHGVMLGRACMENT-TVLSQTDQLVY 402
Query: 162 GA--PSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKA 219
P + +RR V++ Y+ Y + + + +++KP+L PG+ +F+ K
Sbjct: 403 NEKPPHTAFSRRTVLDAYKSYLEE--NSSLCSLSSAFELLKPVLGILKGMPGHRIFRNKL 460
Query: 220 DAAFQTCKTV---KSFLEETIV---AIPDSVLDSPIEE 251
D + + LE+ +V A+ LD P+ +
Sbjct: 461 DMYIRNYASTLPCSGILEKAMVDVDAVAPGCLDLPLAD 498
>gi|409407337|ref|ZP_11255788.1| hypothetical protein GWL_29420 [Herbaspirillum sp. GW103]
gi|386433088|gb|EIJ45914.1| hypothetical protein GWL_29420 [Herbaspirillum sp. GW103]
Length = 329
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 123/219 (56%), Gaps = 8/219 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + + + ++ V+VK RIG+DD SY+ + D
Sbjct: 80 NCGCPSERVQ-KGAFGACLMGEPALVADCVKAMRDAVSIDVTVKHRIGIDDVQSYDFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +++ + + FI+H+R A+L G+SP ENR IPPLKY Y Y L +DFPDL +NGGI
Sbjct: 139 FVGQIAE-AGCKTFIVHARNAILKGLSPKENREIPPLKYHYAYQLKQDFPDLEILINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGL--TRRQVVEKYQIY 180
T+ E++ LR VM+GR AY NP Y + D YG G +R +V+ Y
Sbjct: 198 KTLPEIDEHLRH-VDGVMLGREAYHNP-YLMASFDARYYGELPGGRQPSRAEVIAAMLPY 255
Query: 181 GDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKR 217
L +G+N +R + + +L PG F++
Sbjct: 256 IKRQLELHGDNGRGLRLNSITRHMLGLLTGMPGARAFRQ 294
>gi|365091176|ref|ZP_09328683.1| tRNA-dihydrouridine synthase A [Acidovorax sp. NO-1]
gi|363416294|gb|EHL23414.1| tRNA-dihydrouridine synthase A [Acidovorax sp. NO-1]
Length = 328
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 119/218 (54%), Gaps = 13/218 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG SLM P+ V + + + +VPV+VK RIG+D + Y + D
Sbjct: 85 NCGCPSDRVQ-RGAFGASLMKSPQLVADCVKAMKDVVDVPVTVKHRIGIDKVEDYGFVRD 143
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ + FI+H+R A L G+SP ENR +PPL+YE + L +FP T +NGGI
Sbjct: 144 FIGTVADAGCSV-FIVHARNAWLQGLSPKENRDVPPLRYEVVHRLKAEFPQFTIAINGGI 202
Query: 123 NTVDEVNAALRKGAHH---VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQI 179
T +A +++ H VM+GR AY NPW+ L D YG LTR +V
Sbjct: 203 TT----DAVVQEQLTHLDGVMIGREAYHNPWW-LARWDQLYYGGAPCPLTREEVELAMVE 257
Query: 180 YGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
Y + YG PH + + +L HS PG ++++
Sbjct: 258 YMEREAAQYGTPWPH---IARHMLGLRHSLPGARIWRQ 292
>gi|421600606|ref|ZP_16043582.1| tRNA-dihydrouridine synthase A [Bradyrhizobium sp. CCGE-LA001]
gi|404267283|gb|EJZ31987.1| tRNA-dihydrouridine synthase A [Bradyrhizobium sp. CCGE-LA001]
Length = 309
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 116/215 (53%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V + + A VPV+VKCRIG+DD D L D
Sbjct: 70 NVGCPSDRVK-DGRFGACLMAEPELVARCVEEMKAAVAVPVTVKCRIGIDDQDPEVAL-D 127
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+ + S I+H+RKA LNG+SP ENR IPPL YE Y L PD+ +NGGI
Sbjct: 128 TLARAVVASGCDALIVHARKAWLNGLSPKENRDIPPLDYERVYRLKHAMPDVPVIINGGI 187
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L VM+GRAAYQ PW LG VD I+G + + ++ +E Y +
Sbjct: 188 RSIEEAKAHLEH-VDGVMLGRAAYQEPWRLLG-VDDDIFGETAPHTSMQEALEAMMPYIE 245
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L R H + + + FH+ PG F+R
Sbjct: 246 EQLAR--GTRLHA--ITRHFVGAFHAVPGARAFRR 276
>gi|16125555|ref|NP_420119.1| tRNA-dihydrouridine synthase A [Caulobacter crescentus CB15]
gi|221234301|ref|YP_002516737.1| tRNA-dihydrouridine synthase A [Caulobacter crescentus NA1000]
gi|13422645|gb|AAK23287.1| TIM-barrel protein, yjbN family [Caulobacter crescentus CB15]
gi|220963473|gb|ACL94829.1| NIFR3-like protein [Caulobacter crescentus NA1000]
Length = 341
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 130/256 (50%), Gaps = 16/256 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P V E M+ I VP +VKCRIGVDD D L
Sbjct: 96 NVGCPSDRVQS-GRFGACLMREPDLVAECMAAIKNAVRVPATVKCRIGVDDQDPEESLFT 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+ + ++ + F++H+RKA L G+SP ENR IPPL Y Y L R+ P LT +NGG+
Sbjct: 155 LVDRCAA-AGIDTFVVHARKAWLQGLSPKENRDIPPLDYALVYRLKRERPALTIAINGGV 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+VD L G VM+GRAAY LG VD ++G + + + VE+Y+ Y
Sbjct: 214 PSVDAALEHLANGVDGVMLGRAAYHEAGL-LGEVDRRVFGLDVADVDSFEAVERYRPY-- 270
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L H+ + + +L FH PG ++R T + VKS +V D
Sbjct: 271 --LARELAAGTHLAAMSRHMLGLFHGLPGARAWRR-----ILTVEGVKSGAGLDVV---D 320
Query: 243 SVLDSPIEEAPRGRED 258
LD+ + A RE+
Sbjct: 321 RALDA-VRAALASREE 335
>gi|421472742|ref|ZP_15920917.1| tRNA dihydrouridine synthase A [Burkholderia multivorans ATCC
BAA-247]
gi|400222506|gb|EJO52881.1| tRNA dihydrouridine synthase A [Burkholderia multivorans ATCC
BAA-247]
Length = 328
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 119/217 (54%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + VPV+VK RIGVD + Y + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVAVPVTVKHRIGVDAVEDYAFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L DFP L +NGGI
Sbjct: 139 FVGTVAEAGCST-FIVHARNAILKGLSPKENREIPPLKYDYAYRLKHDFPSLEIVINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L VM+GR AY NP Y L VD YG+ + TR + + Y
Sbjct: 198 KTLDEVAQHLEH-VDGVMLGREAYHNP-YVLADVDARFYGSTDAAPTREEAEARLIEYCA 255
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L GTY + +++ L + PG ++R
Sbjct: 256 AELKRGTY------LGAIVRHALGLYRGVPGARGWRR 286
>gi|407786170|ref|ZP_11133316.1| tRNA-dihydrouridine synthase A [Celeribacter baekdonensis B30]
gi|407201902|gb|EKE71898.1| tRNA-dihydrouridine synthase A [Celeribacter baekdonensis B30]
Length = 330
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 125/233 (53%), Gaps = 15/233 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-ANTNVPVSVKCRIGVDDHDSYNQLC 61
+ GCPS +V G FG LM P+ V + ++++ A +VPV+VKCRIGVDD + L
Sbjct: 100 NVGCPSDRVQS-GAFGAVLMKSPELVADCVTLMQEAAGDVPVTVKCRIGVDDQEPTEVLP 158
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
F+ + + TR IH+RKA L+G+SP +NR IPPL Y +A+ FPDL ++NGG
Sbjct: 159 AFVETMRAAGITR-MQIHARKAWLDGLSPKQNRDIPPLDYPLAHAMKEVFPDLHLSINGG 217
Query: 122 INTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYG 181
I +++ V L VMVGRAAY P+ LG D I+G LTR +VV + Y
Sbjct: 218 IQSLEMVEEELTY-MDGVMVGRAAYHQPYDILGAADARIFGDTRVALTRHEVVLAMEDY- 275
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCK 227
+G + V + K +L F +PG +KR K A F+ K
Sbjct: 276 ---IGRHIAEGGKVAQITKHMLGLFAGQPGARRWKRVLSEGAHKDGAGFELVK 325
>gi|387886780|ref|YP_006317079.1| tRNA-dihydrouridine synthase A [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386871596|gb|AFJ43603.1| tRNA-dihydrouridine synthase A [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 324
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 129/235 (54%), Gaps = 11/235 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG+SLM +P+ V + + + N ++P+SVKCRIG D +DSY L +
Sbjct: 92 NVGCPSERVK-KGNFGLSLMAEPELVADCVKAMKDNLDIPISVKCRIGYDYNDSYKDLYN 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K + + IH+RK LNG+SP ENRTIP LKY+ Y + +DFP+L +NGGI
Sbjct: 151 FVNKQVQ-AGVDYLCIHARKGWLNGLSPKENRTIPELKYDIVYNIKKDFPNLELGINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L K VM+GR AY NP D Y P ++ +V + Y
Sbjct: 210 TTIEDTQEHL-KHVDSVMIGREAYHNPM-LFKDFDNLFYNHPIKDISPLEVAYEMAEYIK 267
Query: 183 AILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSFLE 234
L N P++R + K L+ F+ P +F+R ++ A + V +FL+
Sbjct: 268 IQLS----NDPNMRLNNTTKHTLNLFNGLPNAKIFRRYLSENATKKDANVDTFLK 318
>gi|221054640|ref|XP_002258459.1| dihydrouridine synthase [Plasmodium knowlesi strain H]
gi|193808528|emb|CAQ39231.1| dihydrouridine synthase, putative [Plasmodium knowlesi strain H]
Length = 508
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 139/278 (50%), Gaps = 35/278 (12%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS KVA G FG LM P+ V + I +PVSVK R GVDD DS+ L FI
Sbjct: 224 GCPSTKVANKGAFGAYLMKKPEHVRNIVYEIKRKVQIPVSVKIRTGVDDCDSFPFLRSFI 283
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VSS+ T HFI+H+RKA L G+ P +NR++PPL+Y Y L + +P L FTLNGGI T
Sbjct: 284 ECVSSVGCT-HFIVHARKAWLKGLDPKQNRSVPPLQYSKVYTLCQLYPHLKFTLNGGIKT 342
Query: 125 VDEVNAAL-----------------RKGAHH------VMVGRAAYQNPWYTLGHVDTAIY 161
++E A L + +H VM+GRA +N L D +Y
Sbjct: 343 IEEAVALLNGYLPREDKCDGEKTYVQVQNYHVNPLNGVMLGRACMENT-TVLSQTDQLVY 401
Query: 162 GA--PSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKA 219
P + +RR V++ Y+ Y + + + +++KP+L PG+ +F+ K
Sbjct: 402 NEKPPHTAFSRRTVLDAYKSYLEE--NSSLCSLSSAFELLKPILGILKGMPGHRIFRNKV 459
Query: 220 DAAFQTCKTV---KSFLEETIV---AIPDSVLDSPIEE 251
D + + LE+ +V A+ LD P+ +
Sbjct: 460 DMYIRNYSSTLPCSGILEKAMVDVDAVAPGCLDLPLAD 497
>gi|88706546|ref|ZP_01104250.1| tRNA-dihydrouridine synthase A [Congregibacter litoralis KT71]
gi|88699258|gb|EAQ96373.1| tRNA-dihydrouridine synthase A [Congregibacter litoralis KT71]
Length = 359
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G FG LM + V + +S + + + V+VK RIG+D +SY +LCD
Sbjct: 125 NCGCPSDRVQ-NGAFGACLMGEASLVRDCISAMRSACAIDVTVKHRIGIDHMESYEELCD 183
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+RKA L G+SP ENR +PPL Y + Y L DFP+LT +NGGI
Sbjct: 184 FVGTVAE-GGSEVFIVHARKAWLKGLSPKENREVPPLNYPWVYQLKEDFPELTIVMNGGI 242
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L VM+GR+AY NPW L VD ++G R ++E Y +
Sbjct: 243 ESLEDSQTHL-GHVDGVMLGRSAYHNPW-VLAEVDHRLFGDVKQPRYREDIIEAMLPYVE 300
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + + + + LL + PG ++R
Sbjct: 301 KELA----HGARLNQITRHLLGLYQEVPGARRYRR 331
>gi|254877424|ref|ZP_05250134.1| tRNA-dihydrouridine synthase A [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843445|gb|EET21859.1| tRNA-dihydrouridine synthase A [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 324
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 131/233 (56%), Gaps = 7/233 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG+SLM +P+ V + + + N +VP+SVKCRIG D +DSY +L +
Sbjct: 92 NVGCPSERVK-KGNFGLSLMAEPELVADCVKAMKDNLDVPISVKCRIGYDHNDSYEELYN 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K + + IH+RK L+G+SP ENRTIP LKY+ Y + +DFP+L +NGG+
Sbjct: 151 FVNKQVQ-AGVDYLCIHARKGWLSGLSPKENRTIPELKYDVVYNIKKDFPNLELGINGGV 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L K VM+GR AY NP D Y P + ++ +V + Y
Sbjct: 210 TTIEDTQEHL-KYVDSVMIGREAYHNPM-LFKDFDNLFYNQPINDISPLEVAYEMAEYIK 267
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSFLE 234
L + N + + ++ K L+ F+ P +F+R ++ A + V +FL+
Sbjct: 268 IQLNSDPNMK--LNNITKHTLNLFNGLPNAKVFRRYLSENATKKDANVDTFLK 318
>gi|226945328|ref|YP_002800401.1| tRNA-dihydrouridine synthase A [Azotobacter vinelandii DJ]
gi|226720255|gb|ACO79426.1| Dihydrouridine synthase yjbN family protein [Azotobacter vinelandii
DJ]
Length = 336
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 119/213 (55%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM DP V + + + +PV+VK RIG+D DSY +L DF+
Sbjct: 106 GCPSDRVQNN-LIGACLMGDPARVADCVKAMRDAVTIPVTVKHRIGIDGRDSYGELRDFV 164
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+V + R FI+H+R A+L G+SP ENR IPPL+YE L +DFPDL LNGGI T
Sbjct: 165 GQVCE-AGCRSFIVHARIAILAGLSPKENREIPPLRYEIVAQLKQDFPDLEIVLNGGIKT 223
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E LR VM+GR AY NP Y L VD ++ +P L+R + +++ + Y
Sbjct: 224 LEECRLHLRS-FDGVMIGREAYHNP-YLLAQVDRELFDSPLPALSRHEALKRLRPY---- 277
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ Y N + + + +L PG F++
Sbjct: 278 IQQYLNEGGALHHITRHVLGLGQGFPGARRFRQ 310
>gi|395006482|ref|ZP_10390300.1| tRNA dihydrouridine synthase A [Acidovorax sp. CF316]
gi|394315574|gb|EJE52368.1| tRNA dihydrouridine synthase A [Acidovorax sp. CF316]
Length = 341
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 110/202 (54%), Gaps = 4/202 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG SLM P+ V + + + +VPV+VK RIG+D + Y + D
Sbjct: 105 NCGCPSDRVQ-RGAFGASLMKAPQLVADGVKAMKDVVDVPVTVKHRIGIDKVEDYGFVRD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ T FI+H+R A L G+SP ENR IPPL+YE + L ++FP LT +NGGI
Sbjct: 164 FVGTVADAGCTV-FIVHARNAWLQGLSPKENRDIPPLRYEVVHRLKQEFPQLTIAINGGI 222
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
DEV + VM+GR AY NPW+ L D YG LTR +V Y +
Sbjct: 223 QA-DEVVLEQLQHLDGVMIGREAYHNPWW-LARWDQIYYGGEPCALTREEVELAMVDYME 280
Query: 183 AILGTYGNNRPHVRDVMKPLLH 204
+G PH+ M L H
Sbjct: 281 REAALHGTPWPHIARHMLGLRH 302
>gi|372273289|ref|ZP_09509337.1| tRNA-dihydrouridine synthase A [Marinobacterium stanieri S30]
Length = 317
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 127/238 (53%), Gaps = 14/238 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P+ V E ++ + A ++PV+VK R+G+DD DS+ L
Sbjct: 80 NVGCPSDRVQNN-MIGACLMEFPERVAECLAEMQAAVDIPVTVKHRLGIDDLDSFEHLHR 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V S R F IH+RKA+L+G+SP ENR IPPL Y+ Y + FPDL +NGGI
Sbjct: 139 FV-EVVRQSGCRSFTIHARKAILDGLSPKENRDIPPLIYDRVYRIKELFPDLEVVINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E + L+ VM+GR AYQNPW L D + L+R V E + + +
Sbjct: 198 KTLEECDTHLQH-VDGVMIGREAYQNPWPLLSQADARFFNNNYPYLSRLDVAEAFIPHLE 256
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L + V+K LL FH + G F+R K DAA T + + +
Sbjct: 257 KRLAEGAP----LYAVIKHLLGLFHGQRGGKQFRRYLSENGHKRDAAVDTFRAALALV 310
>gi|323144476|ref|ZP_08079078.1| tRNA dihydrouridine synthase A [Succinatimonas hippei YIT 12066]
gi|322415754|gb|EFY06486.1| tRNA dihydrouridine synthase A [Succinatimonas hippei YIT 12066]
Length = 337
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 124/218 (56%), Gaps = 14/218 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS KV G FG LM P + + + + +VPV+VK RIGVD+ DS D
Sbjct: 96 NAGCPSDKVQS-GNFGAVLMKTPDLIADCVKAMQDAVSVPVTVKTRIGVDEDDS----VD 150
Query: 63 FIYK-VSSLSPT--RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 119
F K V +++ T RH I+H+RKA LNG+SP ENRTIPPL YE Y + FP+L T+N
Sbjct: 151 FTLKLVETIAATGCRHVILHARKAWLNGLSPKENRTIPPLDYERVYLVKSAFPNLRITIN 210
Query: 120 GGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQI 179
GGI T+D V L++ VM+GRA NP + L VD+ I+G+ +R +++ K
Sbjct: 211 GGITTIDAVKDQLKR-VDGVMLGRAIIDNP-FILSKVDSEIFGSIEPMPSREELLYKAV- 267
Query: 180 YGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
D P V +M+ LL F+S PG L++R
Sbjct: 268 --DLAAKIKAEGIP-VHHLMRHLLGLFNSCPGARLYRR 302
>gi|428306689|ref|YP_007143514.1| tRNA-U16,U17-dihydrouridine synthase [Crinalium epipsammum PCC
9333]
gi|428248224|gb|AFZ14004.1| tRNA-U16,U17-dihydrouridine synthase [Crinalium epipsammum PCC
9333]
Length = 334
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 120/215 (55%), Gaps = 9/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P V + ++ + TN+PV+VK RIG+DD DSY + +
Sbjct: 105 NVGCPSDRVQ-NGNFGACLMAQPYKVADCIAAMIQATNIPVTVKHRIGIDDLDSYEDMTN 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS R F +H+RKA L G+SP ENR IPPL+Y + L ++FP L +NGG
Sbjct: 164 FVRIVSDAGCQR-FTVHARKAWLQGLSPKENRDIPPLRYGDVHKLKQEFPHLFIEINGGF 222
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ +V L + VM+GRAAY NP Y D IYG ++ TR QVVE Y D
Sbjct: 223 TNLQQVKEQL-QFVDAVMIGRAAYDNP-YIFAIADGEIYGKDTAP-TRHQVVEAMLPYID 279
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + + +L F+ +PG+ +KR
Sbjct: 280 ----YWAKKGLKLNKITRHMLQLFNGQPGSRAWKR 310
>gi|72383178|ref|YP_292533.1| tRNA-dihydrouridine synthase A [Prochlorococcus marinus str.
NATL2A]
gi|72003028|gb|AAZ58830.1| tRNA-U16,U17-dihydrouridine synthase [Prochlorococcus marinus str.
NATL2A]
Length = 335
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 132/241 (54%), Gaps = 12/241 (4%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPSPKV G FG LM P V + + N+P++VK R+G+D+ DS + L F+
Sbjct: 103 GCPSPKVKS-GNFGACLMGKPNIVASCIEKMKKTCNIPITVKHRLGIDNLDSDDYLLKFV 161
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
SL+ FI+H+RKA LNG++P ENR+IPPL+YE L + P+L LNGGINT
Sbjct: 162 -DTCSLAGADRFIVHARKAWLNGLNPKENRSIPPLQYERVQNLKNNRPELIIELNGGINT 220
Query: 125 VDEVNAALR--KGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ AL+ GA MVGRAAY +P + +D+ I+G L+R ++++K +
Sbjct: 221 INDSIEALKVFDGA---MVGRAAYSHP-FLWTKIDSLIFGQKEKYLSRSKIIKKLIPFAQ 276
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L G + + + +L+ + P + +++ QT K S L++ + D
Sbjct: 277 KHLENGG----RLWQISRHILNLIENIPNAKILRQELSEKCQTQKADISILKKIAQQLED 332
Query: 243 S 243
+
Sbjct: 333 A 333
>gi|167566497|ref|ZP_02359413.1| tRNA-dihydrouridine synthase A [Burkholderia oklahomensis EO147]
gi|167570050|ref|ZP_02362924.1| tRNA-dihydrouridine synthase A [Burkholderia oklahomensis C6786]
Length = 339
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 111/188 (59%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMCDAVSIPVTVKHRIGVDAVEDYAFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L +DFP L +NGGI
Sbjct: 155 FVGTVAA-AGCDVFIVHARNAILKGLSPKENREIPPLKYDYAYRLKQDFPQLEIIVNGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L+ VM+GR AY NP Y L VD YGA + TR V + Y
Sbjct: 214 TTLDEVERHLQH-VDGVMLGREAYHNP-YVLADVDARFYGAATPAPTREAVEAQLVEYCA 271
Query: 183 AIL--GTY 188
L GTY
Sbjct: 272 TELARGTY 279
>gi|381395425|ref|ZP_09921125.1| tRNA-dihydrouridine synthase A [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379328952|dbj|GAB56258.1| tRNA-dihydrouridine synthase A [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 345
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 120/214 (56%), Gaps = 8/214 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM P V E + + A ++PV+VKCRIG+DD D L F+
Sbjct: 95 GCPSDRVK-NGSFGACLMSSPSVVAECVRAMQAEVDIPVTVKCRIGIDDMDDDAGLSGFV 153
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+ + HFI+H+RKA L G+SP +NR IPPL YE + L +D P L ++NGGI T
Sbjct: 154 LPIYE-AGCEHFIVHARKAWLQGLSPKQNRDIPPLNYERVHRLKQDNPALKISINGGITT 212
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG-APSSGLTRRQVVEKYQIYGDA 183
+++ L+ VM+GR Y NP + L +VD I+G A +TR +VV Y +
Sbjct: 213 LEQAKHQLQY-VDGVMMGREVYANP-FILSNVDAEIFGHANDDQITRSEVVYAMSAYINE 270
Query: 184 ILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + G H + + +L F S+ G +++R
Sbjct: 271 QVSSSGARVWH---IARHMLGLFQSQVGGKIWRR 301
>gi|149913943|ref|ZP_01902475.1| tRNA-dihydrouridine synthase A [Roseobacter sp. AzwK-3b]
gi|149812227|gb|EDM72058.1| tRNA-dihydrouridine synthase A [Roseobacter sp. AzwK-3b]
Length = 337
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 111/213 (52%), Gaps = 6/213 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LM DP V E + + + V V+VKCRIGVDD D L +F+
Sbjct: 98 GCPSDRVQS-GTFGAVLMKDPGLVSECCAAMIEASAVEVTVKCRIGVDDQDPETVLPEFL 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+VS+ R F IH+RKA L G+SP +NR IPPL Y+ + FP L ++NGGI T
Sbjct: 157 ARVSAAGVQR-FTIHARKAWLQGLSPKQNRDIPPLDYDLVLRMKALFPGLHLSINGGITT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+D+V L G VMVGRAAY P L D I+G T V K Y +A
Sbjct: 216 LDQVRDFLEAGLDGVMVGRAAYHQPADILCAADRLIFGEEGPDTTPDDAVLKMLPYIEAH 275
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + + + +L F PG ++R
Sbjct: 276 LAQGGR----LHQITRHMLGLFAGRPGARAWRR 304
>gi|197105805|ref|YP_002131182.1| tRNA-dihydrouridine synthase A [Phenylobacterium zucineum HLK1]
gi|196479225|gb|ACG78753.1| tRNA-dihydrouridine synthase [Phenylobacterium zucineum HLK1]
Length = 343
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 129/257 (50%), Gaps = 20/257 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V E M+ + A VPV+VKCRIGVDD D L
Sbjct: 93 NVGCPSDRVQS-GRFGACLMREPELVAECMAAMGAAVKVPVTVKCRIGVDDQDPEESLFT 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+ + T F++H+RKA L G+SP ENR +PPL Y + L + PDLT +NGGI
Sbjct: 152 LVDLCAEAGVT-SFVVHARKAWLKGLSPKENRDVPPLDYPLVWRLKAERPDLTIVINGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY-- 180
++DE LR VM+GRAAY P LG D I+G ++ + VE ++ Y
Sbjct: 211 GSLDEAEDHLRH-VDGVMLGRAAYHTP-DLLGQADARIFGEDRR-VSPFEAVEAFRPYVA 267
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
G GT H+ + + +L FH PG ++R KA A + + +
Sbjct: 268 GQLARGT------HLAAMTRHMLGLFHGVPGARAWRRILTVDGVKAGAGLEVIDRALAAV 321
Query: 234 EETIVAIPDSVLDSPIE 250
E + + L +E
Sbjct: 322 SERASGLQEQRLAGGLE 338
>gi|221197852|ref|ZP_03570898.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD2M]
gi|221204590|ref|ZP_03577607.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD2]
gi|221175447|gb|EEE07877.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD2]
gi|221181784|gb|EEE14185.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD2M]
Length = 357
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 119/217 (54%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + VPV+VK RIGVD + Y + D
Sbjct: 109 NCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVAVPVTVKHRIGVDAVEDYAFVRD 167
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L DFP L +NGGI
Sbjct: 168 FVGTVAEAGCST-FIVHARNAILKGLSPKENREIPPLKYDYAYRLKHDFPSLEIVINGGI 226
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV L VM+GR AY NP Y L VD YG+ + TR + + Y
Sbjct: 227 KTLDEVAQHLEH-VDGVMLGREAYHNP-YVLADVDARFYGSTDAAPTREEAEARLIEYCA 284
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L GTY + +++ L + PG ++R
Sbjct: 285 AELKRGTY------LGAIVRHALGLYRGVPGARGWRR 315
>gi|115372138|ref|ZP_01459449.1| tRNA-dihydrouridine synthase A [Stigmatella aurantiaca DW4/3-1]
gi|115370840|gb|EAU69764.1| tRNA-dihydrouridine synthase A [Stigmatella aurantiaca DW4/3-1]
Length = 330
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V ++ + +PV+VK RI +DD + + L
Sbjct: 79 NVGCPSDRVQS-GRFGACLMAEPELVARLVAAMREAVRIPVTVKSRIAIDDMEEWPTLER 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +S+ +R FI+H+RKA L G+SP ENR IPPL+YE Y L +FP L ++NGGI
Sbjct: 138 FVRLISAEGCSR-FIVHARKAWLQGLSPKENRDIPPLRYELVYRLKAEFPSLDISINGGI 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++ LR VM+GRAAY+NP Y L D+ ++GA + R VVE Y +
Sbjct: 197 KTLEAAAEHLRH-VDGVMIGRAAYENP-YLLAEADSRLFGASEAPRDRHDVVEAMLPYME 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A P + + + +L F PG ++R
Sbjct: 255 A---RRSQGAP-LNAITRHMLGLFQGLPGARAWRR 285
>gi|253991388|ref|YP_003042744.1| tRNA-dihydrouridine synthase A [Photorhabdus asymbiotica]
gi|253782838|emb|CAQ86003.1| tRNA-dihydrouridine synthase A [Photorhabdus asymbiotica]
Length = 341
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 118/217 (54%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + K V + + + NVPV+VK RIG+D+ DSY LCD
Sbjct: 107 NVGCPSDRVQ-NGRFGACLMGEAKLVADCVKAMQDVVNVPVTVKTRIGIDEQDSYEFLCD 165
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V S F IH+RKA L+G+SP ENR IPPL Y Y L +DFP LT +NGGI
Sbjct: 166 FIDTVVQHSGCNIFTIHARKAWLSGLSPKENREIPPLDYPRVYQLKKDFPQLTIAINGGI 225
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQNP L VD ++ A + V+ Y +
Sbjct: 226 KSLEEAKQHLQY-VDGVMIGREAYQNP-AILAQVDHELFDAVIPVVDTVAVIRALYPYIE 283
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 284 QALSQGTY------LGHITRHILGIFQGIPGARQWRR 314
>gi|254427220|ref|ZP_05040927.1| TIM-barrel protein, yjbN family [Alcanivorax sp. DG881]
gi|196193389|gb|EDX88348.1| TIM-barrel protein, yjbN family [Alcanivorax sp. DG881]
Length = 350
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 130/239 (54%), Gaps = 8/239 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G G LM +P+ V + + A VPV+VK RIG+DD D Y+ L
Sbjct: 120 NVGCPSDRVQ-QGKIGAILMAEPELVARCVEAMQAAVRVPVTVKTRIGIDDQDDYDFLYR 178
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + T IH+RKA+L+G+SP ENR IPPL Y+ YA+ + FP + LNGG+
Sbjct: 179 FVGRMEAAGCT-SLTIHARKAILSGLSPKENRDIPPLIYQRAYAIKQAFPHIEIILNGGV 237
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+V+ + + VM+GR AYQNP++ L D ++G + +R + E++ Y +
Sbjct: 238 KTLDQVHEHMGE-VDGVMIGREAYQNPYF-LAEADRVVFGDDHAIPSRLAIAEQFLPYVE 295
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
G+ H ++ +L+ F +PG F+R +T L + + +P
Sbjct: 296 RRYA-LGHAPKH---SLRHILNLFQGQPGARRFRRHLSENMHKPETTPQVLMDALAQLP 350
>gi|310818800|ref|YP_003951158.1| tRNA-dihydrouridine synthase a [Stigmatella aurantiaca DW4/3-1]
gi|309391872|gb|ADO69331.1| tRNA-dihydrouridine synthase A [Stigmatella aurantiaca DW4/3-1]
Length = 344
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V ++ + +PV+VK RI +DD + + L
Sbjct: 93 NVGCPSDRVQS-GRFGACLMAEPELVARLVAAMREAVRIPVTVKSRIAIDDMEEWPTLER 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +S+ +R FI+H+RKA L G+SP ENR IPPL+YE Y L +FP L ++NGGI
Sbjct: 152 FVRLISAEGCSR-FIVHARKAWLQGLSPKENRDIPPLRYELVYRLKAEFPSLDISINGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++ LR VM+GRAAY+NP Y L D+ ++GA + R VVE Y +
Sbjct: 211 KTLEAAAEHLRH-VDGVMIGRAAYENP-YLLAEADSRLFGASEAPRDRHDVVEAMLPYME 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A P + + + +L F PG ++R
Sbjct: 269 A---RRSQGAP-LNAITRHMLGLFQGLPGARAWRR 299
>gi|118602457|ref|YP_903672.1| tRNA-dihydrouridine synthase A [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|118567396|gb|ABL02201.1| tRNA-U16,U17-dihydrouridine synthase [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 322
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 127/236 (53%), Gaps = 12/236 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V FGV LM P+ V + + + +VP++VK RIGVD+ DSY++L +
Sbjct: 91 NVGCPSNRVQSSN-FGVCLMQTPQVVAQCVDAMRQMVDVPITVKSRIGVDNMDSYDELVN 149
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V S S + +IH+RKA L G+SP ENR++P L YE Y + RDFP L +NGGI
Sbjct: 150 FVATVES-SGCDNLVIHARKAWLKGLSPKENRSVPKLNYERVYQIKRDFPHLAIGINGGI 208
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
++ ++L+ H VM+GRA Y P Y L VD IY SS L+R QV+ + Y
Sbjct: 209 M---DMESSLQHLEHVDSVMLGRAVYHQP-YLLRKVDGLIYQKKSSILSREQVLLAFIEY 264
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEET 236
+ N +R + + + +H + FKR + + +LE T
Sbjct: 265 ----MKVQHANSVLIRSMTRHIFGLYHGQKNAKKFKRLLSGKIVKFEHLYEWLEYT 316
>gi|68071985|ref|XP_677906.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56498194|emb|CAH96102.1| conserved hypothetical protein [Plasmodium berghei]
Length = 441
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 151/306 (49%), Gaps = 47/306 (15%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS KVA G FG LM P+ V + I +PV+VK R GVDD DS++ L
Sbjct: 150 NVGCPSTKVANKGAFGAYLMKKPQLVKNIVYEIKKKVQIPVTVKIRTGVDDLDSFSFLRS 209
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VSS + HFIIHSRKA L G+ P +NR+IPPL+Y + L + +P++ FTLNGGI
Sbjct: 210 FIETVSS-AGCDHFIIHSRKAWLKGLDPKQNRSIPPLEYNKVFDLCKLYPNIKFTLNGGI 268
Query: 123 NTVDEVNAALR--------KGAHH--------------------VMVGRAAYQNPWYTLG 154
++++ A L G H+ VM+GR+ +N L
Sbjct: 269 KSIEQGVALLNGYAPINNMSGKHNNCTDNNYIKIKDYDINPLYGVMIGRSCMEN-ITVLA 327
Query: 155 HVDTAIYG--APSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 212
D +Y P++ RR V++ Y+ Y + Y + +++KP+L PG+
Sbjct: 328 KTDKLVYNYDIPTTAYNRRTVLDAYKSYLEQNSSFYS--LVNAFELLKPILGILKGMPGH 385
Query: 213 GLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPYK 272
LF+ K D+ + ++ + + +LD + + +++ DL+ YK
Sbjct: 386 RLFRNKIDSYIRKYASILNCAQ---------ILDKAMSDV----DNIAPGCLDLVLDDYK 432
Query: 273 AREQEV 278
A+++ +
Sbjct: 433 AQQEYI 438
>gi|332709415|ref|ZP_08429376.1| tRNA dihydrouridine synthase A [Moorea producens 3L]
gi|332351674|gb|EGJ31253.1| tRNA dihydrouridine synthase A [Moorea producens 3L]
Length = 340
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 123/239 (51%), Gaps = 8/239 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P V + + N+PV+VK RIG+DD D Y + +
Sbjct: 110 NVGCPSSRVQ-NGNFGACLMAQPDQVARCVEDMVKVVNIPVTVKHRIGIDDLDRYEDMAN 168
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ S + +HF +H+RKA L G+SP ENR +PPL+Y + L ++ PDL +NGG
Sbjct: 169 FV-RIVSEAGCQHFTVHARKAWLQGLSPKENRNVPPLRYSDVHRLKQELPDLFVEINGGF 227
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++V RK VM+GRAAY NP Y D IY TR QVVE Y D
Sbjct: 228 TSLEQVREQ-RKYVDGVMIGRAAYDNP-YLFAKADCDIYSDTVIPPTRHQVVEAMFSYID 285
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
+G + + + +L F +PG+ +KR + E + IP
Sbjct: 286 HWVG----KGIKLNKITRHMLQLFAGQPGSRAWKRHLTENSCLVGVGSDVVREALAKIP 340
>gi|85060114|ref|YP_455816.1| tRNA-dihydrouridine synthase A [Sodalis glossinidius str.
'morsitans']
gi|84780634|dbj|BAE75411.1| conserced hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 343
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 119/213 (55%), Gaps = 7/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + V ++ + +P++VK RIG+D+ DSY LC+FI
Sbjct: 113 GCPSDRVQ-NGRFGACLMAEKDRVAACIAAMREAVTLPITVKTRIGIDEQDSYAFLCEFI 171
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V++ FIIH+RKA LNG+SP ENR IPPL Y+ Y L RDFP L LNGGI T
Sbjct: 172 DTVATHGGCETFIIHARKAWLNGLSPKENREIPPLDYDRVYQLKRDFPALRLMLNGGIKT 231
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+ + L+K VM+GR AYQNP L VD+ ++G + + V++ Y +
Sbjct: 232 LHDAREHLQK-LDGVMMGREAYQNPG-ILARVDSELFGDADTLPNQAAVIDVMLPYIERE 289
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + G H + + +L F PG ++R
Sbjct: 290 L-SQGAALGH---ITRHMLGLFQGMPGARQWRR 318
>gi|126461351|ref|YP_001042465.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides ATCC 17029]
gi|126103015|gb|ABN75693.1| TIM-barrel protein, yjbN family [Rhodobacter sphaeroides ATCC
17029]
Length = 331
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 116/213 (54%), Gaps = 9/213 (4%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V GCFG LM P V + ++ + A + VPV+VKCRIGVD+ + L F+
Sbjct: 100 GCPSDRVQS-GCFGAVLMERPSLVADCVAAMIAESPVPVTVKCRIGVDEQEPSEVLPAFL 158
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V++ + RHF+IH+RKA L G+SP ENR IPPL Y A+ R FP+LT LNGG+ +
Sbjct: 159 ETVAA-AGVRHFVIHARKAWLQGLSPRENREIPPLDYPLVIAMKRRFPELTICLNGGVGS 217
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+ + A L +G +M+GRAAY P L D P L V+ + Y A
Sbjct: 218 LTQAEALLAQGLDGIMIGRAAYNEPELLL-EADRLWGEEPPRDLA--AVLADMRPYISAH 274
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G R H + + +L F PG ++R
Sbjct: 275 L--EGGGRLH--QITRHMLGLFAGRPGARHWRR 303
>gi|352079900|ref|ZP_08950969.1| TIM-barrel protein, yjbN family [Rhodanobacter sp. 2APBS1]
gi|351684609|gb|EHA67678.1| TIM-barrel protein, yjbN family [Rhodanobacter sp. 2APBS1]
Length = 328
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 124/216 (57%), Gaps = 12/216 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P V + + + +VPV+VKCRIGVDD D Y L
Sbjct: 97 NVGCPSDRVQS-GRFGACLMYEPALVADCVKAMRDAVSVPVTVKCRIGVDDQDDYAGLQQ 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F ++ + ++H+RKA L G+SP ENR +PPL Y Y L R+FP L +NGGI
Sbjct: 156 FT-ELMLEAGVEVLVVHARKAWLKGLSPKENREVPPLDYARVYRLKREFPPLVVVINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQ-VVEKYQIYG 181
+TVD+V + L + VM+GRAAY +P Y L ++ A++ P L RR+ V+++ + Y
Sbjct: 215 STVDQVRSHLAQ-LDGVMLGRAAYHDP-YLLAQLEHALHDEP---LPRREDVLQRLRPYV 269
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+A L G H+ + LL + EPG F+R
Sbjct: 270 EAELAR-GTALKHIS---RHLLGLYQGEPGARAFRR 301
>gi|300120278|emb|CBK19832.2| unnamed protein product [Blastocystis hominis]
Length = 407
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 140/299 (46%), Gaps = 65/299 (21%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD---------- 52
+CGCPSPKVA GCFG LML P V + + + + ++PV+VKCRIGVD
Sbjct: 87 NCGCPSPKVA-EGCFGARLMLSPWRVYDIVQHLQRHLSIPVTVKCRIGVDRIYFLKLCFA 145
Query: 53 ----DHDSYNQLCDFIYKVSS----------------------LSP-------------- 72
++DSY +LC FI VS L P
Sbjct: 146 HNIVEYDSYEELCRFIRIVSGAGTEQDRKSFASASDDEAESDPLMPPVQSESDGIQRQEI 205
Query: 73 -----TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 127
+HFIIH+RK LL+G+S +NR++PPL Y++ Y LL DFP + F++NGG+ ++ +
Sbjct: 206 QPCYGAKHFIIHARKCLLSGLSAKQNRSVPPLHYDWVYRLLDDFPCIDFSINGGVLSLGQ 265
Query: 128 VNAALRKGAHH------VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYG 181
L + + VM+GR + PW +D YG P+ L+ + V KY Y
Sbjct: 266 AKDLLERKSQSGRQLRGVMIGRLLTKAPW-NFHFIDQFFYGEPNPSLSPFETVMKYVEYC 324
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
+ + +++KPL + F PG+ +R+ A CK K E + +
Sbjct: 325 EQMEKNGYTQHFSTNELLKPLFNIFVDIPGSLRCRREMFEA--VCKDHKPLREAVMQGL 381
>gi|421498959|ref|ZP_15946026.1| dusA [Aeromonas media WS]
gi|407181999|gb|EKE55989.1| dusA [Aeromonas media WS]
Length = 331
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + + + N+PV+VK RIG+D+ DSY L
Sbjct: 92 NVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMRDVVNIPVTVKTRIGIDEQDSYEFLQA 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V + FI+H+RKA L+G+SP ENR IPPL Y Y + +D+P+LT LNGG+
Sbjct: 151 FIEQVRD-AGCETFIVHARKAWLSGLSPKENREIPPLDYPRVYQVKQDYPELTIALNGGV 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
N++++ L++ VM+GR AYQNP Y L VD ++G +R +VV Y +
Sbjct: 210 NSLEQTLEHLQQ-VDGVMMGREAYQNP-YILAEVDNRVFGLGGEVPSRHEVVRMMLPYME 267
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GN H + + +L F + G ++R
Sbjct: 268 QELAK-GNYLSH---MTRHMLGLFQNMQGARAWRR 298
>gi|399521008|ref|ZP_10761780.1| tRNA-dihydrouridine synthase A [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399111497|emb|CCH38339.1| tRNA-dihydrouridine synthase A [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 391
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 119/213 (55%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P V + + + N+PV+VK RIG++ DSY +LCDF+
Sbjct: 161 GCPSDRVQNN-MIGACLMGHPALVADCVKAMQDAVNIPVTVKHRIGINGRDSYAELCDFV 219
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+V + R F +H+R A+L G+SP ENR IPPL+Y+ L +DFPDL LNGGI T
Sbjct: 220 GQVRD-AGCRSFTVHARIAILEGLSPKENREIPPLRYDVAAQLKQDFPDLEIILNGGIKT 278
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E L+ VM+GR AY NP Y L VD+ ++GA +G+TR + + Y +
Sbjct: 279 LEECEQHLQT-FDGVMLGREAYHNP-YLLAQVDSRLFGAADAGITRMDALLALKPYVEQH 336
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + V + +L PG F++
Sbjct: 337 LREGGT----LHHVSRHVLGLAQGFPGARRFRQ 365
>gi|126735535|ref|ZP_01751280.1| TIM-barrel protein, yjbN family [Roseobacter sp. CCS2]
gi|126714722|gb|EBA11588.1| TIM-barrel protein, yjbN family [Roseobacter sp. CCS2]
Length = 331
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 114/215 (53%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P V + ++ + A VPV+VKCRIGVDD D + L D
Sbjct: 96 NCGCPSDRVQS-GHFGAVLMESPVLVADCVAAMIAAVRVPVTVKCRIGVDDQDPHVILPD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +VS+ R F +H+RKA L G+SP ENR +PPL Y+ + FP L ++NGGI
Sbjct: 155 FLARVSAAGVDR-FSVHARKAWLQGLSPKENREVPPLNYDLVMKMKGLFPHLHVSINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+ L +G VM+GRAAY P L D IYG P T VV Y
Sbjct: 214 ATLDQAEDFLARGLDGVMIGRAAYHTPADILLQADARIYGDPRE-RTAEDVVHLMLPY-- 270
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + V + +L F PG ++R
Sbjct: 271 --IADHIAQGGRLGQVTRHMLGLFQGRPGARGWRR 303
>gi|121605287|ref|YP_982616.1| tRNA-dihydrouridine synthase A [Polaromonas naphthalenivorans CJ2]
gi|120594256|gb|ABM37695.1| tRNA-U16,U17-dihydrouridine synthase [Polaromonas naphthalenivorans
CJ2]
Length = 337
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 120/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +PK V + + + +VPV+VK RIG+D + Y + D
Sbjct: 103 NCGCPSERVQ-RGAFGACLMAEPKLVADCVKAMVDAVSVPVTVKHRIGIDREERYEFVRD 161
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS + FI+H+R A L G+SP ENR +PPL+YE + L ++F LT +NGGI
Sbjct: 162 FVGTVSE-AGCDTFIVHARNAWLKGLSPKENREVPPLRYELVHRLKKEFAHLTICVNGGI 220
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T ++V L + VM+GR AY NPW+ L D +GA +TR QV + Q+
Sbjct: 221 TTGEQVQGQLLE-LDGVMIGREAYHNPWW-LASWDADFFGAGGESITREQV--EAQMCDY 276
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ G+ P + + +L H PG+ +++
Sbjct: 277 MVREAAGHGTP-FSAIARHMLGLRHGLPGSRRWRQ 310
>gi|171058412|ref|YP_001790761.1| tRNA-dihydrouridine synthase A [Leptothrix cholodnii SP-6]
gi|170775857|gb|ACB33996.1| TIM-barrel protein, yjbN family [Leptothrix cholodnii SP-6]
Length = 342
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 104/180 (57%), Gaps = 8/180 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + + + +VPV+VK RIG+D +SY+ + D
Sbjct: 103 NCGCPSERVQ-KGAFGACLMAEPALVADGVKAMRDAVDVPVTVKHRIGIDRGESYDFVRD 161
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A L G+SP ENR IPPL+YE Y L RDFP LT +NGGI
Sbjct: 162 FVGTLAD-AGCEVFIVHARNAWLQGLSPKENRDIPPLRYEQVYQLKRDFPQLTIVINGGI 220
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T DE+ A L AH VMVGR AY PW G D +G + R QV + Y
Sbjct: 221 RTDDEIAAHL---AHVDGVMVGRQAYHEPWQMAG-WDLRFFGEAAPAGERAQVEAAWMDY 276
>gi|119384161|ref|YP_915217.1| tRNA-dihydrouridine synthase A [Paracoccus denitrificans PD1222]
gi|119373928|gb|ABL69521.1| tRNA-U16,U17-dihydrouridine synthase [Paracoccus denitrificans
PD1222]
Length = 329
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 115/216 (53%), Gaps = 8/216 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V GCFG LM P+ V E ++ + A + V V+VKCRIGVD+ D L D
Sbjct: 93 NVGCPSDRVQS-GCFGAVLMTRPELVAECVAAMIAASPVEVTVKCRIGVDEQDPEAVLPD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI ++ + R +H+RKA L G+SP ENR +PPL Y + + + FPDL ++NGGI
Sbjct: 152 FIARMRE-AGVRRMTVHARKAWLQGLSPRENREVPPLDYPLVHRMKQAFPDLHLSINGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++D V L VM+GRAAY PW LG D ++G + + +
Sbjct: 211 ASLDAVRDHL-AAMDGVMIGRAAYHQPWDMLGQADR-LWGEEPRFADPLEAARALRDLVE 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK 218
A L T G + + +L FH PG ++R+
Sbjct: 269 AHLATGGR----LHQATRHMLGLFHGRPGARGWRRQ 300
>gi|393762890|ref|ZP_10351513.1| tRNA-dihydrouridine synthase A [Alishewanella agri BL06]
gi|392605807|gb|EIW88695.1| tRNA-dihydrouridine synthase A [Alishewanella agri BL06]
Length = 297
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 125/240 (52%), Gaps = 8/240 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P+ V +++ + ++PVSVK RIG+DD D Y L D
Sbjct: 64 NVGCPSDRVQ-NGMFGACLMARPQLVADSVKAMQDVVSIPVSVKTRIGIDDSDEYQFLQD 122
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + + F+IH+RKA L G+SP ENR IPPL Y+ Y L RDFP L ++NGGI
Sbjct: 123 FVATVAE-AGCQQFVIHARKAWLKGLSPKENREIPPLNYDRVYQLKRDFPQLDISINGGI 181
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L++ VM+GR AY NP Y L VD +Y + ++ Q+V Y
Sbjct: 182 KTLTDAQQHLQQ-LDGVMIGREAYTNP-YLLSQVDALLYQDHWAVPSQHQLVRLMVPYIQ 239
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ G H + + +L F PG ++R L + + +P+
Sbjct: 240 QQI-QQGARFWH---IARHMLGLFQGMPGARQWRRLLSEQGHLASAEPELLLQALALVPE 295
>gi|209363933|ref|YP_001424351.2| tRNA-dihydrouridine synthase A [Coxiella burnetii Dugway 5J108-111]
gi|212218379|ref|YP_002305166.1| tRNA-dihydrouridine synthase A [Coxiella burnetii CbuK_Q154]
gi|207081866|gb|ABS78105.2| NIFR3-like protein [Coxiella burnetii Dugway 5J108-111]
gi|212012641|gb|ACJ20021.1| NIFR3-like protein [Coxiella burnetii CbuK_Q154]
Length = 353
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 14/222 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG L+ + + V + ++ ++A N+PVSVK R GVDD DSY L
Sbjct: 115 NVGCPSGRVTA-GRFGACLLKEAELVADCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYH 173
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + R FIIH+RKA L G+SPAENRT+PPL Y Y L +DFP L +NGGI
Sbjct: 174 FVKTVAE-AGCRIFIIHARKAWLKGLSPAENRTVPPLAYPMVYQLKQDFPGLEIIINGGI 232
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA-------IYGAPSSGLTRRQVVE 175
T++ +N LR+ VM+GR AY NP + D + + + LT ++V+
Sbjct: 233 KTIEAINDHLRE-VDGVMIGREAYANPLFCAAFDDLSKPVFSLGVADKKQTPLTPKRVLL 291
Query: 176 KYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+Y Y + N P + + + L F +PG ++R
Sbjct: 292 RYLPY---MAKQLANGVP-LYAMTRHLNGLFQGQPGAKKWRR 329
>gi|350546169|ref|ZP_08915586.1| tRNA dihydrouridine synthase A [Candidatus Burkholderia kirkii
UZHbot1]
gi|350526052|emb|CCD41462.1| tRNA dihydrouridine synthase A [Candidatus Burkholderia kirkii
UZHbot1]
Length = 328
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 113/188 (60%), Gaps = 6/188 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIGVD + Y + D
Sbjct: 65 NCGCPSERVQC-GAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYEFVRD 123
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+R A+L G+SP ENR IPPLKYEY Y L RDFP L ++NGGI
Sbjct: 124 FVGTVAD-AGCEVFIVHARNAILKGLSPKENREIPPLKYEYAYRLKRDFPHLEISINGGI 182
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DEV+ L K VM+GR AY +P Y L VDT GA + +R ++ Y
Sbjct: 183 KTLDEVDEHL-KHVDGVMLGREAYHHP-YVLAGVDTRFCGADTPIPSRDEIEAGLIDYAR 240
Query: 183 AIL--GTY 188
A L GTY
Sbjct: 241 AELARGTY 248
>gi|304415193|ref|ZP_07395906.1| tRNA-dihydrouridine synthase A [Candidatus Regiella insecticola
LSR1]
gi|304282951|gb|EFL91401.1| tRNA-dihydrouridine synthase A [Candidatus Regiella insecticola
LSR1]
Length = 344
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 119/213 (55%), Gaps = 7/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + V + + + ++PV+VK RIG+D HDSY LCDF+
Sbjct: 114 GCPSDRVQ-NGRFGACLMGEADLVADCIKAMNDGVSIPVTVKTRIGIDSHDSYEFLCDFV 172
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+++ FIIH+RKA L+G+SP ENR +PPL Y Y L RDFP LT +NGGI T
Sbjct: 173 DTIANKGGCHIFIIHARKAWLSGLSPKENREVPPLNYPRVYQLKRDFPQLTIVINGGITT 232
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ L K VM+GR AYQNP L VD ++ ++ + V++ Y +
Sbjct: 233 LEDAADHL-KYVDGVMIGREAYQNP-AILAEVDRKLFDPQAAITDKVAVIKALYPYIEQE 290
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + G H + + +L F PG ++R
Sbjct: 291 L-SRGARLGH---ITRHILGLFQGTPGARQWRR 319
>gi|212212648|ref|YP_002303584.1| tRNA-dihydrouridine synthase A [Coxiella burnetii CbuG_Q212]
gi|212011058|gb|ACJ18439.1| NIFR3-like protein [Coxiella burnetii CbuG_Q212]
Length = 353
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 14/222 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG L+ + + V + ++ ++A N+PVSVK R GVDD DSY L
Sbjct: 115 NVGCPSGRVTA-GRFGACLLKEAELVADCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYH 173
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + R FIIH+RKA L G+SPAENRT+PPL Y Y L +DFP L +NGGI
Sbjct: 174 FVKTVAE-AGCRIFIIHARKAWLKGLSPAENRTVPPLAYPMVYQLKQDFPGLEIIINGGI 232
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA-------IYGAPSSGLTRRQVVE 175
T++ +N LR+ VM+GR AY NP + D + + + LT ++V+
Sbjct: 233 KTIEAINDHLRE-VDGVMIGREAYANPLFCAAFDDLSKPVFSLGVTDKKQTPLTPKRVLL 291
Query: 176 KYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+Y Y + N P + + + L F +PG ++R
Sbjct: 292 RYLPY---MAKQLANGVP-LYAMTRHLNGLFQGQPGAKKWRR 329
>gi|146276373|ref|YP_001166532.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides ATCC 17025]
gi|145554614|gb|ABP69227.1| TIM-barrel protein, yjbN family [Rhodobacter sphaeroides ATCC
17025]
Length = 335
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 116/215 (53%), Gaps = 9/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V GCFG LM P + + ++ + A + VPV+VKCRIGVD+ + L
Sbjct: 102 NVGCPSDRVQS-GCFGAVLMERPALLADCVAAMIAESPVPVTVKCRIGVDEQEPAEILPA 160
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + RHF+IH+RKA L G+SP ENR IPPL Y A+ R FP+LT LNGG+
Sbjct: 161 FLETVAA-AGVRHFVIHARKAWLQGLSPRENREIPPLDYPLVIAMKRRFPELTICLNGGV 219
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L +G VM+GRAAY P LG D P L R V+ + Y
Sbjct: 220 ATLSQAEELLAQGLDGVMIGRAAYNEPELLLG-ADRLWGCEPPRDLDR--VLADMRPYIA 276
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + + + +L F PG ++R
Sbjct: 277 EHLAAGGR----LHQITRHMLGLFSGRPGARHWRR 307
>gi|428781097|ref|YP_007172883.1| tRNA dihydrouridine synthase A [Dactylococcopsis salina PCC 8305]
gi|428695376|gb|AFZ51526.1| tRNA dihydrouridine synthase A [Dactylococcopsis salina PCC 8305]
Length = 358
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 121/218 (55%), Gaps = 14/218 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V + + + ++P++VK RIG+D+ D Y +
Sbjct: 128 NVGCPSDRVKS-GNFGACLMAQPEKVAKVVEAMQNAVSLPITVKHRIGIDERDRYEDMSY 186
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS R F +H+RKA L G+SP ENR +PPL+Y+ Y L ++FP L +NGGI
Sbjct: 187 FVRVVSDAGCQR-FTVHARKAWLQGLSPKENRNVPPLRYQDVYRLKQEFPHLFVEINGGI 245
Query: 123 NTVDEVNAALRKGAHH---VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQI 179
T+ E+ L HH VM+GRAAY NP VD IYG SS T ++VV+
Sbjct: 246 KTLAEIKEHL----HHLDAVMIGRAAYDNP-NLFSSVDREIYGEDSSPPTMKEVVKAMFP 300
Query: 180 YGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
Y L + N + + + L+H F+ +PG ++R
Sbjct: 301 Y----LDYWVNRGVKLNSMTRHLIHIFNGQPGAKAWRR 334
>gi|209885665|ref|YP_002289522.1| tRNA-dihydrouridine synthase A [Oligotropha carboxidovorans OM5]
gi|337740745|ref|YP_004632473.1| tRNA-dihydrouridine synthase A [Oligotropha carboxidovorans OM5]
gi|386029762|ref|YP_005950537.1| tRNA-dihydrouridine synthase A [Oligotropha carboxidovorans OM4]
gi|209873861|gb|ACI93657.1| tRNA-dihydrouridine synthase A [Oligotropha carboxidovorans OM5]
gi|336094830|gb|AEI02656.1| tRNA-dihydrouridine synthase A [Oligotropha carboxidovorans OM4]
gi|336098409|gb|AEI06232.1| tRNA-dihydrouridine synthase A [Oligotropha carboxidovorans OM5]
Length = 332
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 125/238 (52%), Gaps = 15/238 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LM +P+ VGE + + A VPV+VKCRIG+DD D L D
Sbjct: 95 GCPSDRVQ-DGRFGACLMAEPQLVGECVVAMKAAVRVPVTVKCRIGIDDQDPERALDDLA 153
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V + + I+H+RKA L G+SP ENR +PPL Y+ Y L PD+T +NGGI +
Sbjct: 154 RSVVT-AGADALIVHARKAWLQGLSPKENRNVPPLDYDRVYRLKAAMPDMTIAINGGIAS 212
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKY--QIYGD 182
++E L+ VM+GRAAYQ PW L VD ++ AP + + +E I +
Sbjct: 213 IEEARGHLQH-VDGVMLGRAAYQEPWRLLA-VDPELFDAPPPHASMHEAIETLFPYIEKE 270
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
GT + + + ++ FH G F+R A +TC ++ ++E A+
Sbjct: 271 RARGT------RLHSITRHMVGAFHGVAGARAFRR---ALAETCVKPEAGIDELRAAL 319
>gi|340028079|ref|ZP_08664142.1| tRNA-dihydrouridine synthase A [Paracoccus sp. TRP]
Length = 322
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 124/235 (52%), Gaps = 17/235 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V GCFG LM P+ V E ++ + A + V V+VKCRIGVD+ L D
Sbjct: 86 NVGCPSDRVQS-GCFGAVLMTRPELVAECVAAMIAASPVEVTVKCRIGVDNQAPEAVLPD 144
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V + R IH+RKA L G+SP ENR +PPL Y + + + FP+L ++NGGI
Sbjct: 145 FIARVRD-AGVRRLTIHARKAWLQGLSPRENREVPPLDYPLVHRMKQQFPELHLSINGGI 203
Query: 123 NTVDEVNA--ALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAP--SSGLTRRQVVEKYQ 178
T+D A+ G VM+GRAAY PW LG D P S L Q + +
Sbjct: 204 ATLDATREHLAVMDG---VMIGRAAYHQPWEVLGQADRLWGTEPPFSDPLAAAQALRE-- 258
Query: 179 IYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSF 232
++ T+ + + V + +L FH PG ++R+ ++ A + C ++
Sbjct: 259 -----LVETHLDRGGRLHQVTRHMLGLFHGRPGARGWRRQLSEGASRACNRAEAL 308
>gi|418362882|ref|ZP_12963500.1| tRNA-dihydrouridine synthase A [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|356685888|gb|EHI50507.1| tRNA-dihydrouridine synthase A [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 328
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 124/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + + + ++PV+VK RIG+DD DSY L
Sbjct: 89 NVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMRDVVDIPVTVKTRIGIDDQDSYEFLQT 147
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V + FI+H+RKA L+G+SP ENR IPPL Y Y + +D+P+LT LNGG+
Sbjct: 148 FIEQVRD-AGCDTFIVHARKAWLSGLSPRENREIPPLDYPRVYRVKQDYPELTIALNGGV 206
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L++ VM+GR AYQNP Y L VD+ ++G S +R +VV Y +
Sbjct: 207 TSLEQTLEHLQQ-VDGVMMGREAYQNP-YILAQVDSQLFGLASEIPSRHEVVRMMLPYME 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GN H + + +L F + G ++R
Sbjct: 265 QELAK-GNYLSH---MTRHMLGLFQNMQGARAWRR 295
>gi|384426019|ref|YP_005635376.1| tRNA-dihydrouridine synthase A [Xanthomonas campestris pv. raphani
756C]
gi|341935119|gb|AEL05258.1| tRNA-dihydrouridine synthase A [Xanthomonas campestris pv. raphani
756C]
Length = 366
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 123/215 (57%), Gaps = 10/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + ++ + A T +PV+VKCR+GVDD + Y
Sbjct: 130 NCGCPSDRVQA-GRFGACLMREPALVADCVAAMCAATALPVTVKCRLGVDDDEDYAVFAG 188
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V ++H+R A L G+SP ENR +PPL+Y++ Y L ++ P L LNGGI
Sbjct: 189 FIDQVVGAGAA-MVVVHARNAWLKGLSPKENREVPPLRYDWAYRLKQERPALPVVLNGGI 247
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+V+ A L+ VM+GRAAY +P Y L ++ A+ G P R +++ YQ Y
Sbjct: 248 ASVEASLAHLQH-TDGVMLGRAAYHDP-YVLHQLEAALSGRPER--ARADLLQAYQPYVQ 303
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + ++ + + +L FH +PG +F++
Sbjct: 304 AQL----DQGLALKHMTRHILGLFHGQPGGRVFRQ 334
>gi|427737592|ref|YP_007057136.1| tRNA-U16,U17-dihydrouridine synthase [Rivularia sp. PCC 7116]
gi|427372633|gb|AFY56589.1| tRNA-U16,U17-dihydrouridine synthase [Rivularia sp. PCC 7116]
Length = 320
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 123/239 (51%), Gaps = 8/239 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM+ P+ V + ++ + T +PV+VK RIGVDD DSY + +
Sbjct: 89 NVGCPSSRVQS-GNFGACLMVQPQQVADCIAAMINATKIPVTVKHRIGVDDLDSYEDMVN 147
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KV S + F +H+RKA L G+SP ENR +PPL+Y+ + L +DFP L +NGG
Sbjct: 148 FV-KVVSQTGCERFTVHARKAWLQGLSPKENRDVPPLRYDDVHRLKQDFPHLFIEINGGF 206
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ +V L + VM+GRAAY NP Y VD Y + R +VVE Y D
Sbjct: 207 KNLVQVQQHL-QSVDAVMIGRAAYDNP-YLFATVDKDFYTESAPFFNRHEVVENMYDYID 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
+ + + + +L F +PG+ +K+ L E + +P
Sbjct: 265 ----KWTEKGLKLNKITRHMLQLFAGKPGSRAWKQHISENSCRFGVGSEVLREALAKVP 319
>gi|145300509|ref|YP_001143350.1| tRNA-dihydrouridine synthase A [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853281|gb|ABO91602.1| tRNA-dihydrouridine synthase A [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 331
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 124/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + + + ++PV+VK RIG+DD DSY L
Sbjct: 92 NVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMRDVVDIPVTVKTRIGIDDQDSYEFLQT 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V + FI+H+RKA L+G+SP ENR IPPL Y Y + +D+P+LT LNGG+
Sbjct: 151 FIEQVRD-AGCDTFIVHARKAWLSGLSPRENREIPPLDYPRVYRVKQDYPELTIALNGGV 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L++ VM+GR AYQNP Y L VD+ ++G S +R +VV Y +
Sbjct: 210 TSLEQTLEHLQQ-VDGVMMGREAYQNP-YILAQVDSQLFGLASEIPSRHEVVRMMLPYME 267
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GN H + + +L F + G ++R
Sbjct: 268 QELAK-GNYLSH---MTRHMLGLFQNMQGARAWRR 298
>gi|429207920|ref|ZP_19199176.1| tRNA dihydrouridine synthase A [Rhodobacter sp. AKP1]
gi|428189313|gb|EKX57869.1| tRNA dihydrouridine synthase A [Rhodobacter sp. AKP1]
Length = 316
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 117/215 (54%), Gaps = 9/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V GCFG LM P V + ++ + A + VPV+VKCRIGVD+ + L
Sbjct: 83 NVGCPSDRVQS-GCFGAVLMERPALVADCVTAMIAESPVPVTVKCRIGVDEQEPSEVLPA 141
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + RHF+IH+RKA L G+SP ENR IPPL Y A+ R FP+LT LNGG+
Sbjct: 142 FLETVAA-AGVRHFVIHARKAWLQGLSPRENREIPPLDYPLVIAMKRRFPELTICLNGGV 200
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ + A L +G +M+GRAAY P L D P L V+ + Y
Sbjct: 201 GSLTQAEALLAQGLDGIMIGRAAYNEPEVLL-EADRLWGEEPPRDLA--AVLADMRPYIS 257
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L G R H + + +L F PG ++R
Sbjct: 258 AHL--EGGGRLH--QITRHMLGLFAGRPGARHWRR 288
>gi|77462473|ref|YP_351977.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides 2.4.1]
gi|77386891|gb|ABA78076.1| tRNA-Dihydrouridine synthase [Rhodobacter sphaeroides 2.4.1]
Length = 313
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 117/215 (54%), Gaps = 9/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V GCFG LM P V + ++ + A + VPV+VKCRIGVD+ + L
Sbjct: 80 NVGCPSDRVQS-GCFGAVLMERPSLVADCVAAMIAESPVPVTVKCRIGVDEQEPSEVLPA 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + RHF+IH+RKA L G+SP ENR IPPL Y A+ R FP+LT LNGG+
Sbjct: 139 FLETVAA-AGVRHFVIHARKAWLQGLSPRENREIPPLDYPLVIAMKRRFPELTICLNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ + A L +G +M+GRAAY P L D P L V+ + Y
Sbjct: 198 GSLTQAEALLAQGLDGIMIGRAAYNEPELLL-EADRLWGEEPPRDLA--AVLADMRPYIS 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L G R H + + +L F PG ++R
Sbjct: 255 AHL--EGGGRLH--QITRHMLGLFAGRPGARHWRR 285
>gi|164685730|ref|ZP_01945619.2| tRNA dihydrouridine synthase A [Coxiella burnetii 'MSU Goat Q177']
gi|165918518|ref|ZP_02218604.1| tRNA dihydrouridine synthase A [Coxiella burnetii Q321]
gi|164601240|gb|EAX33765.2| tRNA dihydrouridine synthase A [Coxiella burnetii 'MSU Goat Q177']
gi|165917764|gb|EDR36368.1| tRNA dihydrouridine synthase A [Coxiella burnetii Q321]
Length = 328
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 122/220 (55%), Gaps = 14/220 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG L+ + + V + ++ ++A N+PVSVK R GVDD DSY L F+
Sbjct: 92 GCPSGRVTA-GRFGACLLKEAELVADCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFV 150
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ + R FIIH+RKA L G+SPAENRT+PPL Y Y L +DFP L +NGGI T
Sbjct: 151 KTVAE-AGCRIFIIHARKAWLKGLSPAENRTVPPLAYPMVYQLKQDFPGLEIIINGGIKT 209
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA-------IYGAPSSGLTRRQVVEKY 177
++ +N LR+ VM+GR AY NP + D + + + LT ++V+ +Y
Sbjct: 210 IEAINDHLRE-VDGVMIGREAYANPLFCAAFDDLSKPVFSLGVADKKQTPLTPKRVLLRY 268
Query: 178 QIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
Y + N P + + + L F +PG ++R
Sbjct: 269 LPY---MAKQLANGVP-LYAMTRHLNGLFQGQPGAKKWRR 304
>gi|389781005|ref|ZP_10194462.1| tRNA-dihydrouridine synthase A [Rhodanobacter spathiphylli B39]
gi|388435514|gb|EIL92416.1| tRNA-dihydrouridine synthase A [Rhodanobacter spathiphylli B39]
Length = 310
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 118/215 (54%), Gaps = 10/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P V + + + +PV+VKCRIGVDD D Y L
Sbjct: 80 NVGCPSDRVQS-GRFGACLMYEPALVADCVRAMRDAVGIPVTVKCRIGVDDQDDYAGLQH 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F ++ + ++H+RKA L G+SP ENR IPPL YE Y L R+FP L +NGGI
Sbjct: 139 FTEQMLG-AGVEVLVVHARKAWLKGLSPKENREIPPLDYERVYRLKREFPQLVVVINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+V +V L + VM+GRAAY +P Y L ++ ++G P +R V+E + Y +
Sbjct: 198 TSVAQVRGHLAQ-LDGVMLGRAAYHDP-YLLAQIEHELHGEPLP--SRESVLEHLRPYVE 253
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L G H+ + LL + EPG F+R
Sbjct: 254 AELAR-GTALKHIS---RHLLGLYQGEPGARAFRR 284
>gi|337755755|ref|YP_004648266.1| tRNA-dihydrouridine synthase A [Francisella sp. TX077308]
gi|336447360|gb|AEI36666.1| tRNA-dihydrouridine synthase A [Francisella sp. TX077308]
Length = 324
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 132/235 (56%), Gaps = 11/235 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG+SLM +P+ V + + + N ++P+SVKCRIG D +DSY +L +
Sbjct: 92 NVGCPSERVK-KGNFGLSLMAEPELVADCVKAMKDNLDIPISVKCRIGYDHNDSYEELYN 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K + + IH+RK L+G+SP ENRTIP LKY Y + +DFP+L +NGGI
Sbjct: 151 FVDKQVQ-AGADYLCIHARKGWLSGLSPKENRTIPELKYSTVYNIKKDFPNLELGINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L K VM+GR AY NP + D Y + ++ +V K Y
Sbjct: 210 TTIEDTQEHL-KHVDSVMIGREAYHNPM-LFKNFDNLFYNQHINDISPLEVAYKMAEYIK 267
Query: 183 AILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSFLE 234
L +N P++R ++ K L+ F+ P +F+R ++ A + V +FL+
Sbjct: 268 IKL----DNDPNMRLNNITKHTLNLFNGLPNAKVFRRYLSENATKKDANVDTFLK 318
>gi|410090253|ref|ZP_11286850.1| tRNA-dihydrouridine synthase A [Pseudomonas viridiflava UASWS0038]
gi|409762459|gb|EKN47478.1| tRNA-dihydrouridine synthase A [Pseudomonas viridiflava UASWS0038]
Length = 339
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 115/195 (58%), Gaps = 4/195 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P+ V + + + ++PV+VK RIG++ DSY QLCDF+
Sbjct: 109 GCPSDRVQNN-MIGACLMGHPELVADCVKAMRDAVSIPVTVKHRIGINGRDSYEQLCDFV 167
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + F +H+R A+L G+SP ENR IPPL+Y+ L +DFP L LNGGI T
Sbjct: 168 GKVHE-AGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKKDFPQLEIVLNGGIKT 226
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ L+ VM+GR AY NP Y L VD ++G+ + ++R + +E + Y +A
Sbjct: 227 LEQCQEHLQT-FDGVMLGREAYHNP-YLLAEVDQQLFGSTAPVISRAEALEALRPYIEAH 284
Query: 185 LGTYGNNRPHVRDVM 199
L + GN R V+
Sbjct: 285 LASGGNMHHITRHVL 299
>gi|332560358|ref|ZP_08414680.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides WS8N]
gi|332278070|gb|EGJ23385.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides WS8N]
Length = 313
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 117/215 (54%), Gaps = 9/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V GCFG LM P V + ++ + A + VPV+VKCRIGVD+ + L
Sbjct: 80 NVGCPSDRVQS-GCFGAVLMERPALVADCVAAMIAESPVPVTVKCRIGVDEQEPSEVLPA 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + RHF+IH+RKA L G+SP ENR IPPL Y A+ R FP+LT LNGG+
Sbjct: 139 FLETVAA-AGVRHFVIHARKAWLQGLSPRENREIPPLDYPLVIAMKRRFPELTICLNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ + A L +G +M+GRAAY P L D P L V+ + Y
Sbjct: 198 GSLTQAEALLAQGLDGIMIGRAAYNEPELLL-EADRLWGEEPPRDLA--AVLADMRPYIS 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L G R H + + +L F PG ++R
Sbjct: 255 AHL--EGGGRLH--QITRHMLGLFAGRPGARHWRR 285
>gi|383772754|ref|YP_005451820.1| tRNA-dihydrouridine synthase A [Bradyrhizobium sp. S23321]
gi|381360878|dbj|BAL77708.1| tRNA-dihydrouridine synthase A [Bradyrhizobium sp. S23321]
Length = 309
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 114/215 (53%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V + + VPV+VKCRIG+DD D L D
Sbjct: 70 NVGCPSDRVK-DGRFGACLMAEPELVARCVEAMKRAVAVPVTVKCRIGIDDQDPEVAL-D 127
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+ + S I+H+RKA LNG+SP ENR IPPL Y+ Y L R P++ +NGGI
Sbjct: 128 TLARAVVASGCDTLIVHARKAWLNGLSPKENRDIPPLDYDRVYRLKRAMPNVPVIINGGI 187
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+DE A L VM+GRAAYQ PW L VD+ I+G + T + +E Y +
Sbjct: 188 RGIDEAKAHLEH-VDGVMLGRAAYQEPWRLLA-VDSDIFGEAAPDATMQDALEAMMPYIE 245
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L R H + + + FH+ PG F+R
Sbjct: 246 QQLAR--GTRLHA--ITRHFVGAFHAVPGARAFRR 276
>gi|389583025|dbj|GAB65761.1| tRNA-dihydrouridine synthase A, partial [Plasmodium cynomolgi
strain B]
Length = 485
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 143/284 (50%), Gaps = 35/284 (12%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS KVA G FG LM P+ V + I ++PVSVK R GVDD DS+ L F+
Sbjct: 201 GCPSTKVANKGAFGAYLMKKPELVRSIVYEIKRKVHIPVSVKIRTGVDDCDSFPFLRSFV 260
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VSS+ T HFI+H+RKA L G+ P +NR++PPL+Y Y L + +P L FTLNGG+ T
Sbjct: 261 ECVSSVGCT-HFIVHARKAWLKGLDPKQNRSVPPLEYHKVYTLCQLYPYLKFTLNGGVKT 319
Query: 125 VDEVNAAL-----RKGA------------------HHVMVGRAAYQNPWYTLGHVDTAIY 161
V+E A L RK + VM+GRA +N L D +Y
Sbjct: 320 VEEAVALLNGYLPRKDKFDSEKTYVQVQNYHVNPLNGVMLGRACMENT-TVLSQTDQLVY 378
Query: 162 GA--PSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKA 219
P + +RR V++ Y+ Y + + + +++KP+L PG+ +F+ K
Sbjct: 379 NEKPPHTAFSRRTVLDAYKSYLEE--NSSLCSLSSAFELLKPILGILKGMPGHRIFRNKL 436
Query: 220 DA---AFQTCKTVKSFLEETIV---AIPDSVLDSPIEEAPRGRE 257
D ++ + LE+ ++ A+ LD P+ + +E
Sbjct: 437 DMYIRSYASTLPCSGILEKAMMDVDAVAPGCLDLPLADYKLQQE 480
>gi|419954119|ref|ZP_14470260.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri TS44]
gi|387969208|gb|EIK53492.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri TS44]
Length = 311
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 112/195 (57%), Gaps = 4/195 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P V + + + + + V+VK RIG++ DSY +LCDF+
Sbjct: 81 GCPSDRVQNN-MIGACLMAHPALVADCVKAMRDSVGIEVTVKHRIGINGRDSYAELCDFV 139
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+V + R F +H+R A+L G+SP ENR +PPL+Y+ L RDFPDL LNGGI T
Sbjct: 140 GQVRD-AGCRSFTVHARIAILEGLSPKENREVPPLRYDVAAQLKRDFPDLEIILNGGIKT 198
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+DE A LR VM+GR AY NP Y L VD ++G+ + ++R Q + + Y +
Sbjct: 199 LDECEAHLRT-FDGVMLGREAYHNP-YLLAQVDQRLFGSSTPVISRAQALRAMRPYIEQH 256
Query: 185 LGTYGNNRPHVRDVM 199
L + G R V+
Sbjct: 257 LASGGTMHHVTRHVL 271
>gi|429335178|ref|ZP_19215817.1| tRNA-dihydrouridine synthase A [Pseudomonas putida CSV86]
gi|428760137|gb|EKX82412.1| tRNA-dihydrouridine synthase A [Pseudomonas putida CSV86]
Length = 336
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 113/195 (57%), Gaps = 4/195 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P V + + + +PV+VK RIG++ DSY +LCDF+
Sbjct: 106 GCPSDRVQNN-MIGACLMGHPALVADCVKAMIDAVQIPVTVKHRIGINGRDSYAELCDFV 164
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+V + R F +H+R A+L G+SP ENR IPPL+Y+ L +DFPDL LNGGI T
Sbjct: 165 GQVRD-AGCRSFTVHARIAILEGLSPKENREIPPLRYDIAAQLKKDFPDLEIILNGGIKT 223
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E + L K VM+GR AY NP Y L VD ++G+ + +TR + +E+ + Y A
Sbjct: 224 LEECHEHL-KTFDGVMLGREAYHNP-YLLAQVDQQLFGSSAPVITRAEALEQLKPYIAAH 281
Query: 185 LGTYGNNRPHVRDVM 199
L G R V+
Sbjct: 282 LAAGGAMHHVTRHVL 296
>gi|418021051|ref|ZP_12660210.1| tRNA dihydrouridine synthase A( EC:1.- ) [Candidatus Regiella
insecticola R5.15]
gi|347603596|gb|EGY28402.1| tRNA dihydrouridine synthase A( EC:1.- ) [Candidatus Regiella
insecticola R5.15]
Length = 311
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 124/227 (54%), Gaps = 16/227 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + V + + + ++PV+VK RIG+D HDSY LCDF+
Sbjct: 81 GCPSDRVQ-NGRFGACLMGEADLVADCIKAMNDAVSIPVTVKTRIGIDSHDSYEFLCDFV 139
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+++ FIIH+RKA L+G+SP ENR +PPL Y Y L RDFP LT +NGGI T
Sbjct: 140 DTIANKGGCHIFIIHARKAWLSGLSPKENREVPPLNYPRVYQLKRDFPQLTIVINGGITT 199
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ L K VM+GR AYQNP L VD ++ ++ + V++ Y +
Sbjct: 200 LEDAAYHL-KYVDGVMIGREAYQNP-AILAEVDRKLFDPQAAITDKVAVIKALYPYIEQE 257
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR---------KADAA 222
L + G H + + +L F PG ++R +ADAA
Sbjct: 258 L-SRGARLGH---ITRHILGLFQGMPGARQWRRYLSEHAHQPRADAA 300
>gi|29654227|ref|NP_819919.1| tRNA-dihydrouridine synthase A [Coxiella burnetii RSA 493]
gi|29541493|gb|AAO90433.1| NifR3-like protein [Coxiella burnetii RSA 493]
Length = 353
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 14/222 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG L+ + + V + ++ ++A N+PVSVK R GVDD DSY L
Sbjct: 115 NVGCPSGRVIA-GRFGACLLKEAELVADCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYH 173
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + R FIIH+RKA L G+SPAENRT+PPL Y Y L +DFP L +NGGI
Sbjct: 174 FVKTVAE-AGCRIFIIHARKAWLKGLSPAENRTVPPLAYPMVYQLKQDFPGLEIIINGGI 232
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA-------IYGAPSSGLTRRQVVE 175
T++ +N LR+ VM+GR AY NP + D + + + LT ++V+
Sbjct: 233 KTIEAINDHLRE-VDGVMIGREAYANPLFCAAFDDLSKPVFSLGVADKKQTPLTPKRVLL 291
Query: 176 KYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+Y Y + N P + + + L F +PG ++R
Sbjct: 292 RYLPY---MAKQLANGVP-LYAMTRHLNGLFQGQPGAKKWRR 329
>gi|293394136|ref|ZP_06638436.1| tRNA-dihydrouridine synthase A [Serratia odorifera DSM 4582]
gi|291423114|gb|EFE96343.1| tRNA-dihydrouridine synthase A [Serratia odorifera DSM 4582]
Length = 349
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 115/213 (53%), Gaps = 7/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + + + ++PV+VK RIG+D+ DSY LCDFI
Sbjct: 113 GCPSDRVQ-NGMFGACLMGQATLVADCIKAMRDVVSIPVTVKTRIGIDEQDSYAFLCDFI 171
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ F IH+RKA L+G+SP +NR +PPL Y Y L RDFP LT +NGG+ T
Sbjct: 172 ETVAGRGECEMFTIHARKAWLSGLSPKQNREVPPLDYPRVYQLKRDFPALTIAINGGVKT 231
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+DE L+ VM+GR AYQNP L VD ++G+ + +E Y +
Sbjct: 232 LDEARQHLQH-LDGVMMGREAYQNPGILL-QVDRELFGSQAPLQDSVAAIEALYPYIERE 289
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L N ++ + + +L F PG ++R
Sbjct: 290 LA----NGTYLGHITRHILGLFQGIPGARQWRR 318
>gi|161831190|ref|YP_001596802.1| tRNA-dihydrouridine synthase A [Coxiella burnetii RSA 331]
gi|161763057|gb|ABX78699.1| tRNA dihydrouridine synthase A [Coxiella burnetii RSA 331]
Length = 328
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 122/220 (55%), Gaps = 14/220 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG L+ + + V + ++ ++A N+PVSVK R GVDD DSY L F+
Sbjct: 92 GCPSGRVIA-GRFGACLLKEAELVADCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFV 150
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ + R FIIH+RKA L G+SPAENRT+PPL Y Y L +DFP L +NGGI T
Sbjct: 151 KTVAE-AGCRIFIIHARKAWLKGLSPAENRTVPPLAYPMVYQLKQDFPGLEIIINGGIKT 209
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA-------IYGAPSSGLTRRQVVEKY 177
++ +N LR+ VM+GR AY NP + D + + + LT ++V+ +Y
Sbjct: 210 IEAINDHLRE-VDGVMIGREAYANPLFCAAFDDLSKPVFSLGVADKKQTPLTPKRVLLRY 268
Query: 178 QIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
Y + N P + + + L F +PG ++R
Sbjct: 269 LPY---MAKQLANGVP-LYAMTRHLNGLFQGQPGAKKWRR 304
>gi|384219832|ref|YP_005610998.1| hypothetical protein BJ6T_61560 [Bradyrhizobium japonicum USDA 6]
gi|354958731|dbj|BAL11410.1| hypothetical protein BJ6T_61560 [Bradyrhizobium japonicum USDA 6]
Length = 319
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 114/215 (53%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V + + ++PV+VKCRIG+DD D L D
Sbjct: 80 NVGCPSDRVK-DGRFGACLMAEPELVARCVDAMKGAVSIPVTVKCRIGIDDQDPEVAL-D 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+ + S I+H+RKA LNG+SP ENR IPPL Y+ Y L R PD+ +NGGI
Sbjct: 138 TLARGVVASGCDALIVHARKAWLNGLSPKENRDIPPLDYDRVYRLKRAMPDVPIIINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
VDE A L VM+GRAAYQ PW L VD I+G + T + +E Y +
Sbjct: 198 PGVDEAKAHLEH-VDGVMLGRAAYQEPWRLLA-VDQDIFGEAAPHATMQDALEAMMPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L R H + + + FH+ PG F+R
Sbjct: 256 QQLAR--GTRLHA--ITRHFVGAFHAVPGARAFRR 286
>gi|110834374|ref|YP_693233.1| tRNA-dihydrouridine synthase A [Alcanivorax borkumensis SK2]
gi|110647485|emb|CAL16961.1| TIM-barrel protein, yjbN family [Alcanivorax borkumensis SK2]
Length = 348
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 129/239 (53%), Gaps = 8/239 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G G LM +P+ V + + A VPV+VK RIG+DD D Y+ L
Sbjct: 118 NVGCPSDRVQ-QGKIGAILMAEPELVARCVEAMQAEVTVPVTVKTRIGIDDQDDYDFLYR 176
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + S IH+RKA+L+G+SP ENR IPPL Y+ YA+ FP + LNGG+
Sbjct: 177 FVDRMEA-SGCTSLTIHARKAILSGLSPKENRDIPPLIYQRAYAIKHAFPHIEIILNGGV 235
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++EV+ + + VM+GR AYQNP++ L D ++G + +R+ + E++ Y +
Sbjct: 236 KTLNEVHEHMGE-VDGVMIGREAYQNPYF-LAEADRVVFGDDHAIPSRQTIAEQFLPYVE 293
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
G+ H ++ +L+ F +PG F+R T L + + +P
Sbjct: 294 RRYA-LGHAPKH---SLRHILNLFQGQPGARRFRRHLSENMHKPGTTPQVLMDALSQLP 348
>gi|255021033|ref|ZP_05293086.1| tRNA-dihydrouridine synthase A [Acidithiobacillus caldus ATCC
51756]
gi|254969447|gb|EET26956.1| tRNA-dihydrouridine synthase A [Acidithiobacillus caldus ATCC
51756]
Length = 335
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 125/216 (57%), Gaps = 17/216 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LML P V E + +A + +PVSVK R+G+D + Y QL DF+
Sbjct: 104 GCPSTRVQ-RGNFGACLMLTPALVREIIDALA-GSGLPVSVKHRLGLDRQEDYGQLADFV 161
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+V++ S RHF++H+R A L G+SPA NRTIPPL++++ L DFP L F LNGG++T
Sbjct: 162 AQVAAGS-CRHFVVHARNAWLRGLSPAANRTIPPLRWDWVARLKEDFPGLRFELNGGLDT 220
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQV-VEKYQIYGDA 183
V +V A + VM+GRAAY P + L ++ A L RRQ + +++
Sbjct: 221 VPKVEAQWSR-VDGVMIGRAAYHRPLF-LTELELA--------LGRRQAPARRAEVFAAL 270
Query: 184 ILGT--YGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ T +G P R + + L FF EPG +++
Sbjct: 271 LAYTEDWGAALPAPR-LTRHLHGFFFGEPGANAWRQ 305
>gi|284800241|ref|ZP_05985987.2| tRNA dihydrouridine synthase A [Neisseria subflava NJ9703]
gi|284795603|gb|EFC50950.1| tRNA dihydrouridine synthase A [Neisseria subflava NJ9703]
Length = 317
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 96/160 (60%), Gaps = 7/160 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSP+V G FG LM D V + ++ + +PV+VK RIGVD Y + D
Sbjct: 80 NCGCPSPRVQ-KGAFGACLMNDVDLVADCLNAMQDAVEIPVTVKHRIGVDRQTEYQVVAD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + + R FI+H+R A L+G+SP ENR +PPLKYEY Y L +DFPDL +NGGI
Sbjct: 139 FVGTLREKTACRTFIVHARNAWLDGLSPKENREVPPLKYEYVYRLKQDFPDLEILINGGI 198
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNP-----WYTLGHVD 157
T +E+ L K VM+GR AY NP W T+ + D
Sbjct: 199 TTNEEIAEHL-KFVDGVMIGREAYHNPMLMRDWDTMFYND 237
>gi|333982800|ref|YP_004512010.1| hypothetical protein [Methylomonas methanica MC09]
gi|333806841|gb|AEF99510.1| TIM-barrel protein, yjbN family [Methylomonas methanica MC09]
Length = 323
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 119/215 (55%), Gaps = 12/215 (5%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM +P+ V ++ + ++PV+VK RIG+D+ DSY +L FI
Sbjct: 95 GCPSDRVQ-NGRFGACLMAEPELVAACVAAMRQAVSIPVTVKSRIGIDERDSYEELTQFI 153
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V++ FI+H+RKA L+G+SP +NR IPPL YE Y L DFP+L +NGGI +
Sbjct: 154 ATVAA-GGCDTFIVHARKAWLSGLSPKQNRDIPPLCYEMVYRLKHDFPELDIIINGGITS 212
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+D + AL K VM+GR Y NP Y L VD +YG TR+ V+ Y
Sbjct: 213 LD-ASLALLKHVDGVMLGREVYHNP-YLLSEVDRCLYGDDYPQKTRQDVILAMLPYVRQQ 270
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G NN + + LL FH G ++R
Sbjct: 271 LQHGVRLNN------IARHLLGLFHGVEGARAWRR 299
>gi|254449021|ref|ZP_05062475.1| tRNA-dihydrouridine synthase A [gamma proteobacterium HTCC5015]
gi|198261415|gb|EDY85706.1| tRNA-dihydrouridine synthase A [gamma proteobacterium HTCC5015]
Length = 315
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 120/213 (56%), Gaps = 9/213 (4%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LM +P V ++ + + ++PV+VK RIG+DD D Y L DF
Sbjct: 82 GCPSDRVQS-GAFGACLMAEPDTVASCVAAMKSAVSIPVTVKTRIGIDDMDDYQNLFDFT 140
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + + +H+RKA L G+SP ENR IPPL Y+ Y L RD+P+L +NGGI
Sbjct: 141 AKVIA-ANCDNLTVHARKAWLKGLSPKENRDIPPLMYDKVYQLKRDYPELEVCINGGITD 199
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
V+ LR VM+GRAAYQNPW+ L ++ ++ T+ +VVE Y +A
Sbjct: 200 SASVSEHLRH-TDGVMIGRAAYQNPWW-LVELEQNLFDELHRP-TQHEVVEGMLEYIEAE 256
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G ++ + + +L F + PG ++R
Sbjct: 257 LLAGGQ----LKHITRHMLGLFQAVPGAKQWRR 285
>gi|443478511|ref|ZP_21068256.1| tRNA-U16,U17-dihydrouridine synthase [Pseudanabaena biceps PCC
7429]
gi|443016195|gb|ELS30911.1| tRNA-U16,U17-dihydrouridine synthase [Pseudanabaena biceps PCC
7429]
Length = 337
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 121/215 (56%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P V + + ++A T +PVSVK RIGVDD D Y + +
Sbjct: 107 NVGCPSDRVQS-GHFGACLMKTPLRVAQCIEAMSAATKIPVSVKHRIGVDDLDRYEDMQN 165
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ S S R F IH+RKA L G+SP +NR +PPL+Y + L ++FP L +NGG+
Sbjct: 166 FV-RILSESGCRRFSIHARKAWLQGLSPKDNREVPPLRYADVHRLKQEFPHLFIEINGGL 224
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ + L K VM+GRAAY NP Y D +G + +R +V E Y D
Sbjct: 225 ITLEQAHEQL-KYVDAVMIGRAAYDNP-YLFATSDREFFGDETPIRSRLEVAEAMIAYID 282
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ R H + + +L FH + G+ L+KR
Sbjct: 283 EWMAK--GLRLH--KITRHMLQLFHGQAGSRLWKR 313
>gi|400754704|ref|YP_006563072.1| tRNA-dihydrouridine synthase A [Phaeobacter gallaeciensis 2.10]
gi|398653857|gb|AFO87827.1| tRNA-dihydrouridine synthase A [Phaeobacter gallaeciensis 2.10]
Length = 343
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P V E ++ + A +V V+VKCRIGVDD D L
Sbjct: 108 NCGCPSDRVQS-GAFGAVLMKSPDLVAECVAAMQAKVDVEVTVKCRIGVDDQDPQEVLPV 166
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++++ R IH+RKA L G+SP ENR IPPL YE + + +FP L +LNGG+
Sbjct: 167 FLERIAAAGCER-VTIHARKAWLKGLSPKENRDIPPLDYEIVHQMKAEFPQLHISLNGGV 225
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSS 166
++DE L +G VM+GRAAY P L D I+G S+
Sbjct: 226 ASLDEALPHLERGLDGVMIGRAAYHQPSDILSQADPLIFGTGSA 269
>gi|170732894|ref|YP_001764841.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia MC0-3]
gi|169816136|gb|ACA90719.1| TIM-barrel protein, yjbN family [Burkholderia cenocepacia MC0-3]
Length = 328
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 103/170 (60%), Gaps = 4/170 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMNEPQLVADCVRAMRDAVSVPVTVKHRIGVDAVEDYAFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + F++H+R A+L G+SP ENR IPPLKY+Y Y L DFP L +NGGI
Sbjct: 139 FVGTVAE-AGCETFVVHARNAILKGLSPKENREIPPLKYDYAYRLKHDFPSLEIVINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQ 172
T+DEV L VM+GR AY NP Y L VD YG+ ++ TR +
Sbjct: 198 TTLDEVAQHLEH-VDGVMLGREAYHNP-YVLAEVDARFYGSTAAVPTREE 245
>gi|37528192|ref|NP_931537.1| tRNA-dihydrouridine synthase A [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787629|emb|CAE16736.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 345
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 119/217 (54%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + NVPV+VK RIG+D+ DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGRFGACLMGEAELVADCVKAMQDVVNVPVTVKTRIGIDEQDSYQFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V S F +H+RKA L+G+SP ENR IPPL Y Y L +DFP LT +NGGI
Sbjct: 170 FIDIVVQHSGCNIFTMHARKAWLSGLSPKENREIPPLDYPRVYQLKKDFPQLTIAINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ +M+GR AYQNP L VD ++ A + VV+ Y +
Sbjct: 230 KSLEEAKQHLQH-VDGIMIGREAYQNP-SILAQVDHELFDASMPVVNTVAVVKALYPYIE 287
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 288 QELSKGTY------LGHITRHILGIFQGIPGARQWRR 318
>gi|398832210|ref|ZP_10590374.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. YR522]
gi|398223747|gb|EJN10082.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. YR522]
Length = 328
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 128/242 (52%), Gaps = 10/242 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + + + ++ V+VK RIG+D +SY+ + D
Sbjct: 79 NCGCPSERVQ-KGAFGACLMGEPTLVADCVKAMRDAVSIDVTVKHRIGIDSVESYDFVRD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +++ + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFP L +NGGI
Sbjct: 138 FVGQIAD-AGCHTFIVHARNAILKGLSPKENREIPPLKYDYAYQLKRDFPQLEILINGGI 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSG--LTRRQVVEKYQIY 180
TV E++A L+ VM+GR AY NP Y + D YG G +R QV+ Y
Sbjct: 197 KTVAEIDAHLQH-VDGVMLGREAYHNP-YLMAGFDARYYGDLPHGRQASREQVIAAMLPY 254
Query: 181 GDAILGTYGNNRP----HVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEET 236
L +G+N + + + +L PG F++ + + + L E
Sbjct: 255 IRRQLALHGDNGRGGGLRLNSITRHMLGLLAGMPGARAFRQTLSDSKRLAEGDPELLHEA 314
Query: 237 IV 238
+
Sbjct: 315 LA 316
>gi|340781665|ref|YP_004748272.1| tRNA-dihydrouridine synthase A [Acidithiobacillus caldus SM-1]
gi|340555818|gb|AEK57572.1| tRNA-dihydrouridine synthase A [Acidithiobacillus caldus SM-1]
Length = 342
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 125/216 (57%), Gaps = 17/216 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LML P V E + +A + +PVSVK R+G+D + Y QL DF+
Sbjct: 111 GCPSTRVQ-RGNFGACLMLTPALVREIIDALA-GSGLPVSVKHRLGLDRQEDYGQLADFV 168
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+V++ S RHF++H+R A L G+SPA NRTIPPL++++ L DFP L F LNGG++T
Sbjct: 169 AQVAAGS-CRHFVVHARNAWLRGLSPAANRTIPPLRWDWVARLKEDFPGLRFELNGGLDT 227
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQV-VEKYQIYGDA 183
V +V A + VM+GRAAY P + L ++ A L RRQ + +++
Sbjct: 228 VPKVEAQWSR-VDGVMIGRAAYHRPLF-LTELELA--------LGRRQAPARRAEVFAAL 277
Query: 184 ILGT--YGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ T +G P R + + L FF EPG +++
Sbjct: 278 LAYTEDWGAALPAPR-LTRHLHGFFFGEPGANAWRQ 312
>gi|400405846|ref|YP_006588705.1| tRNA dihydrouridine synthase A [secondary endosymbiont of
Ctenarytaina eucalypti]
gi|400364209|gb|AFP85277.1| tRNA dihydrouridine synthase A [secondary endosymbiont of
Ctenarytaina eucalypti]
Length = 344
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 99/162 (61%), Gaps = 3/162 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V H C G LM + V +S + ++P++VK R+G+D+ DSY+ LC+
Sbjct: 111 NVGCPSSRVQ-HNCLGACLMAEKDRVAACVSAMNEAVSLPITVKTRLGIDEQDSYSFLCE 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS+ + FIIH+RKA L G+ P ENR IPPL Y Y L RDFP L +NGGI
Sbjct: 170 FIDTVSTSGGCQTFIIHARKAWLKGLLPKENRKIPPLNYGRVYQLKRDFPSLRLMINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAP 164
T+ + A L+ VM+GRAAY NP L +D+ ++G P
Sbjct: 230 TTLKQARAHLQH-LDGVMIGRAAYNNPSILL-RLDSELFGTP 269
>gi|406942758|gb|EKD74919.1| hypothetical protein ACD_44C00295G0002 [uncultured bacterium]
Length = 301
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 132/235 (56%), Gaps = 16/235 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FGV LM +PK + ++ + ++PV+VK RIGVD DSY LC+FI
Sbjct: 82 GCPSARVQS-GHFGVCLMKEPKLISHCVASMIQRVDLPVTVKTRIGVDKQDSYEFLCEFI 140
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
VS + FIIH+RKA L G+SP +NR IPPL YE Y L +DFP L F LNGGI
Sbjct: 141 KTVSE-AGCEEFIIHARKAWLKGLSPKQNRNIPPLMYERVYQLKKDFPKLKFILNGGIKE 199
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQ-VVEKYQIYGDA 183
++ L K +MVGR ++P++ L ++ Y S + RR+ ++++Y Y +
Sbjct: 200 INTAKQHLNK-VDGIMVGREVCRDPYF-LSQLEKTFY---DSEIPRRENILQRYVTYAE- 253
Query: 184 ILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIV 238
++ ++KPLL FH + G K+K Q C + FL++T++
Sbjct: 254 ---QKQKEGIPLKILLKPLLGLFHGQAGA---KQKRHYLLQ-CNNLSQFLKKTMI 301
>gi|120611162|ref|YP_970840.1| tRNA-dihydrouridine synthase A [Acidovorax citrulli AAC00-1]
gi|120589626|gb|ABM33066.1| tRNA-U16,U17-dihydrouridine synthase [Acidovorax citrulli AAC00-1]
Length = 347
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 102/178 (57%), Gaps = 3/178 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIG+ + Y + D
Sbjct: 107 NCGCPSERVQ-RGAFGACLMNEPRLVADCVKAMVDAVSVPVTVKHRIGIGRSEEYAFVRD 165
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + R FI+H+R A L G+SP ENR IPPL+Y+ + L +FPDL +NGG+
Sbjct: 166 FVGTVAE-AGCRVFIVHARNAWLEGLSPKENREIPPLRYDVVHRLKAEFPDLVIAINGGL 224
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T V AL G M+GR AY NPW+ L D +G +SGLTR E Y
Sbjct: 225 ATDAAVQEALGGGLDGAMIGREAYHNPWW-LARWDALYFGDAASGLTREAAEEAMVDY 281
>gi|399993096|ref|YP_006573336.1| tRNA-dihydrouridine synthase A [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
gi|398657651|gb|AFO91617.1| tRNA-dihydrouridine synthase A [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
Length = 334
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P V E ++ + A +V V+VKCRIGVDD D L
Sbjct: 99 NCGCPSDRVQS-GAFGAVLMKSPDLVAECVAAMRAKVDVEVTVKCRIGVDDQDPQEVLPV 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++++ R IH+RKA L G+SP ENR IPPL YE + + +FP L +LNGG+
Sbjct: 158 FLERIAAAGCER-VTIHARKAWLKGLSPKENRDIPPLDYEIVHQMKAEFPQLHISLNGGV 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSS 166
++DE L +G VM+GRAAY P L D I+G S+
Sbjct: 217 ASLDEALPHLERGLDGVMIGRAAYHQPSDILSQADPLIFGTGSA 260
>gi|319639148|ref|ZP_07993902.1| hypothetical protein HMPREF0604_01526 [Neisseria mucosa C102]
gi|317399587|gb|EFV80254.1| hypothetical protein HMPREF0604_01526 [Neisseria mucosa C102]
Length = 334
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSP+V G FG LM D V + ++ + +PV+VK RIGVD Y + D
Sbjct: 95 NCGCPSPRVQ-KGAFGACLMNDVDLVADCLNAMQDAVEIPVTVKHRIGVDRQTEYQVVAD 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + + R FI+H+R A L+G+SP ENR +PPLKYEY Y L +DFPDL +NGGI
Sbjct: 154 FVGALREKTACRTFIVHARNAWLDGLSPKENREVPPLKYEYIYRLKQDFPDLEILINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNP 149
T +E+ L K VM+GR AY NP
Sbjct: 214 TTNEEIAEHL-KFVDGVMIGREAYHNP 239
>gi|422617211|ref|ZP_16685914.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. japonica
str. M301072]
gi|330897594|gb|EGH29013.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. japonica
str. M301072]
Length = 300
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 121/213 (56%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P+ V + + + +PV+VK RIG++ DSY +LCDF+
Sbjct: 70 GCPSDRVQNN-MIGACLMAHPELVADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFV 128
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + F +H+R A+L G+SP ENR IPPL+Y+ L DFPDL LNGGI T
Sbjct: 129 GKVQE-AGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKT 187
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ + L+ VM+GR AY NP Y L HVD ++G+ + ++R +E + Y A
Sbjct: 188 LEQCSEHLQT-FDGVMLGREAYHNP-YLLAHVDQQLFGSTAPVISRYDALESMRPYIAAH 245
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + GN R ++ L F PG F++
Sbjct: 246 IASGGNMHHVTRHMLGLGLGF----PGARRFRQ 274
>gi|336450142|ref|ZP_08620598.1| tRNA dihydrouridine synthase A [Idiomarina sp. A28L]
gi|336282960|gb|EGN76170.1| tRNA dihydrouridine synthase A [Idiomarina sp. A28L]
Length = 327
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 122/214 (57%), Gaps = 10/214 (4%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-ANTNVPVSVKCRIGVDDHDSYNQLCDF 63
GCPS +V +G FG LM +P V + + + A N+PV+VK R+G+DD DSY L
Sbjct: 87 GCPSDRVQ-NGSFGACLMAEPLLVADCIKAMQDAAPNIPVTVKTRLGIDDFDSYEFLQAL 145
Query: 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 123
I + ++ R I+H+RKA LNG+SP ENR +PPL YE Y + RD+P L LNGG+N
Sbjct: 146 IEPLIAIDCPR-VILHARKAWLNGLSPKENREVPPLNYERVYQVKRDYPALQVHLNGGVN 204
Query: 124 TVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDA 183
++ E L+ VM+GRAAY NPW L VDT ++GA + + QV+++ Y +
Sbjct: 205 SLAEAQEHLQL-VDGVMLGRAAYSNPWL-LAEVDT-LFGAAETAPVKEQVIQQMIAYIEQ 261
Query: 184 ILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ G V + +L + + PG ++R
Sbjct: 262 HIEAGG----RFWHVARHMLGLYQNCPGARQWRR 291
>gi|302184838|ref|ZP_07261511.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. syringae
642]
Length = 312
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 121/213 (56%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P+ V + + + +PV+VK RIG++ DSY +LCDF+
Sbjct: 82 GCPSDRVQNN-MIGACLMAHPELVADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFV 140
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + F +H+R A+L G+SP ENR IPPL+Y+ L DFPDL LNGGI T
Sbjct: 141 GKVQE-AGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKT 199
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ + L + VM+GR AY NP Y L HVD ++G+ + ++R +E + Y A
Sbjct: 200 LEQCSEHL-QAFDGVMLGREAYHNP-YLLAHVDQQLFGSTAPVISRYDALESMRPYIAAH 257
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + GN R ++ L F PG F++
Sbjct: 258 IASGGNMHHVTRHMLGLGLGF----PGARRFRQ 286
>gi|126729455|ref|ZP_01745269.1| tRNA-dihydrouridine synthase A [Sagittula stellata E-37]
gi|126710445|gb|EBA09497.1| tRNA-dihydrouridine synthase A [Sagittula stellata E-37]
Length = 339
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 113/215 (52%), Gaps = 6/215 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + + +V V+VKCRIGVDD D L +
Sbjct: 103 NCGCPSDRVQS-GTFGAVLMKNPDTVIRCVEAMQDAVDVDVTVKCRIGVDDQDPCVVLPE 161
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + +R IH+RKA L G+SP ENR IPPL Y+ + FP L ++NGGI
Sbjct: 162 FLARLGAAGCSR-ISIHARKAWLQGLSPKENRDIPPLDYDLVMQMRGLFPHLHLSVNGGI 220
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++D+ L G VMVGRAAY PW LG D I+G P + R VV Y +
Sbjct: 221 GSLDQAVGFLDAGLDGVMVGRAAYHQPWDILGEADARIWGDPQTRRGREDVVRDMLPYIE 280
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + V + +L F PG +++
Sbjct: 281 RHLTRGGR----LHQVTRHMLGLFAGCPGARRWRQ 311
>gi|221638336|ref|YP_002524598.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides KD131]
gi|221159117|gb|ACM00097.1| TIM-barrel protein, yjbN family [Rhodobacter sphaeroides KD131]
Length = 313
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 117/215 (54%), Gaps = 9/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V GCFG LM P V + ++ + A + VPV+VKCRIGVD+ + L
Sbjct: 80 NVGCPSDRVQS-GCFGAVLMERPSLVADCVAAMIAESPVPVTVKCRIGVDEQEPSEVLPA 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +++ + RHF+IH+RKA L G+SP ENR IPPL Y A+ R FP+LT LNGG+
Sbjct: 139 FLETLAA-AGVRHFVIHARKAWLQGLSPRENREIPPLDYPLVIAMKRRFPELTICLNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ + A L +G +M+GRAAY P L D P L V+ + Y
Sbjct: 198 GSLTQAEALLAQGLDGIMIGRAAYNEPELLL-EADRLWGEEPPRDLA--AVLADMRPYIS 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L G R H + + +L F PG ++R
Sbjct: 255 AHL--EGGGRLH--QITRHMLGLFAGRPGARHWRR 285
>gi|440721584|ref|ZP_20901981.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae BRIP34876]
gi|440724630|ref|ZP_20904910.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae BRIP34881]
gi|440363447|gb|ELQ00615.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae BRIP34876]
gi|440369923|gb|ELQ06877.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae BRIP34881]
Length = 312
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 121/213 (56%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P+ V + + + +PV+VK RIG++ DSY +LCDF+
Sbjct: 82 GCPSDRVQNN-MIGACLMAHPELVADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFV 140
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + F +H+R A+L G+SP ENR IPPL+Y+ L DFPDL LNGGI T
Sbjct: 141 GKVQE-AGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKT 199
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ + L+ VM+GR AY NP Y L HVD ++G+ + ++R +E + Y A
Sbjct: 200 LEQCSEHLQT-FDGVMLGREAYHNP-YLLAHVDQQLFGSTAPVISRYDALESMRPYIAAH 257
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + GN R ++ L F PG F++
Sbjct: 258 IASGGNMHHVTRHMLGLGLGF----PGARRFRQ 286
>gi|331006974|ref|ZP_08330216.1| tRNA-dihydrouridine synthase A [gamma proteobacterium IMCC1989]
gi|330419221|gb|EGG93645.1| tRNA-dihydrouridine synthase A [gamma proteobacterium IMCC1989]
Length = 310
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 122/215 (56%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G G LM P+ V +A + ++ V++K RIG+DD D Y + +
Sbjct: 80 NCGCPSDRVQ-NGMIGACLMAHPEKVADAYQAMQDKVDIEVTIKHRIGIDDMDDYEGMVN 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +++ + FI+H+RKA L G+SP ENR +PPL+Y + + L ++FP+LT +NGGI
Sbjct: 139 FIRPIAARG-CQTFIVHARKAWLKGLSPKENREVPPLEYAFVHRLKQEFPELTIVINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+ L K VMVGR AY NP Y L VD ++G +R + E+Y Y
Sbjct: 198 KTLDDTLMHLTK-VDGVMVGREAYSNP-YLLAEVDQHVFGDSHPIPSRTAIAEQYIDYCV 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ G+ H+ + +L + EPG F+R
Sbjct: 256 KQMDK-GSRLNHLS---RHILGLYQGEPGARAFRR 286
>gi|443644533|ref|ZP_21128383.1| tRNA dihydrouridine synthase A [Pseudomonas syringae pv. syringae
B64]
gi|443284550|gb|ELS43555.1| tRNA dihydrouridine synthase A [Pseudomonas syringae pv. syringae
B64]
Length = 332
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 121/213 (56%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P+ V + + + +PV+VK RIG++ DSY +LCDF+
Sbjct: 102 GCPSDRVQNN-MIGACLMAHPELVADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFV 160
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + F +H+R A+L G+SP ENR IPPL+Y+ L DFPDL LNGGI T
Sbjct: 161 GKVQE-AGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKT 219
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ + L+ VM+GR AY NP Y L HVD ++G+ + ++R +E + Y A
Sbjct: 220 LEQCSEHLQT-FDGVMLGREAYHNP-YLLAHVDQQLFGSTAPVISRYDALESMRPYIAAH 277
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + GN R ++ L F PG F++
Sbjct: 278 IASGGNMHHVTRHMLGLGLGF----PGARRFRQ 306
>gi|238899063|ref|YP_002924745.1| tRNA-dihydrouridine synthase A [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229466823|gb|ACQ68597.1| tRNA-dihydrouridine synthase A [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 343
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 128/224 (57%), Gaps = 14/224 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPSP+V G FG +LM D + V + + ++PV++K RIGVD+ DSY L FI
Sbjct: 113 GCPSPRVK-KGAFGAALMQDIEQVCVCLKAMCDVVSIPVTIKIRIGVDEQDSYEFLSQFI 171
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
K+S T IIH+RKA L+G+SP ENR IPPL Y Y L +DFP L +NGGI+T
Sbjct: 172 EKISREIDT--VIIHARKAWLSGLSPKENREIPPLDYPRVYQLKKDFPKLNIVINGGIST 229
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E L+ VM+GRAAYQNP L VD+ ++ A + ++ + Y +
Sbjct: 230 LEEAKQHLQY-VEGVMIGRAAYQNP-TLLTQVDSELFNAQDPLIDITASIKAFYPYIEQE 287
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK-ADAAFQT 225
L GT+ ++ +++P+L F G ++R ++ A+Q+
Sbjct: 288 LSRGTF------LKHLIRPMLGLFQGCAGARQWRRYLSENAYQS 325
>gi|289679765|ref|ZP_06500655.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. syringae
FF5]
Length = 339
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 121/213 (56%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P+ V + + + +PV+VK RIG++ DSY +LCDF+
Sbjct: 109 GCPSDRVQNN-MIGACLMAHPELVADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFV 167
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + F +H+R A+L G+SP ENR IPPL+Y+ L DFPDL LNGGI T
Sbjct: 168 GKVQE-AGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKT 226
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ + L+ VM+GR AY NP Y L HVD ++G+ + ++R +E + Y A
Sbjct: 227 LEQCSEHLQT-FDGVMLGREAYHNP-YLLAHVDQQLFGSTAPVISRYDALESMRPYIAAH 284
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + GN R ++ L F PG F++
Sbjct: 285 IASGGNMHHVTRHMLGLGLGF----PGARRFRQ 313
>gi|404377933|ref|ZP_10983033.1| tRNA dihydrouridine synthase A [Ralstonia sp. 5_2_56FAA]
gi|348615864|gb|EGY65372.1| tRNA dihydrouridine synthase A [Ralstonia sp. 5_2_56FAA]
Length = 327
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 114/190 (60%), Gaps = 15/190 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +PK V + + + ++PV+VK RIG+D ++Y+ + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMAEPKLVAQGVKAMRDAVSIPVTVKHRIGIDAIETYDFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPL+YE Y L RDFP L LNGG+
Sbjct: 139 FVGTIAE-AGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQLKRDFPHLEILLNGGV 197
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+++++A L AH VM+GR AY +P + + D YGA + TR +V
Sbjct: 198 QTLEQIDAHL---AHVDGVMIGREAYHHP-HLMAAFDARYYGAGTEAPTRAEVE------ 247
Query: 181 GDAILGTYGN 190
DA++G G
Sbjct: 248 -DAMIGYVGR 256
>gi|309782238|ref|ZP_07676967.1| tRNA-dihydrouridine synthase A [Ralstonia sp. 5_7_47FAA]
gi|308919009|gb|EFP64677.1| tRNA-dihydrouridine synthase A [Ralstonia sp. 5_7_47FAA]
Length = 346
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 114/190 (60%), Gaps = 15/190 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +PK V + + + ++PV+VK RIG+D ++Y+ + D
Sbjct: 99 NCGCPSERVQ-RGAFGACLMAEPKLVAQGVKAMRDAVSIPVTVKHRIGIDAIETYDFVRD 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPL+YE Y L RDFP L LNGG+
Sbjct: 158 FVGTIAE-AGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQLKRDFPHLEILLNGGV 216
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+++++A L AH VM+GR AY +P + + D YGA + TR +V
Sbjct: 217 QTLEQIDAHL---AHVDGVMIGREAYHHP-HLMAAFDARYYGAGTEAPTRAEVE------ 266
Query: 181 GDAILGTYGN 190
DA++G G
Sbjct: 267 -DAMIGYVGR 275
>gi|424066941|ref|ZP_17804402.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|408001869|gb|EKG42148.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
Length = 339
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 121/213 (56%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P+ V + + + +PV+VK RIG++ DSY +LCDF+
Sbjct: 109 GCPSDRVQNN-MIGACLMAHPELVADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFV 167
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + F +H+R A+L G+SP ENR IPPL+Y+ L DFPDL LNGGI T
Sbjct: 168 GKVQE-AGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKT 226
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ + L+ VM+GR AY NP Y L HVD ++G+ + ++R +E + Y A
Sbjct: 227 LEQCSEHLQT-FDGVMLGREAYHNP-YLLAHVDQQLFGSTAPVISRYDALESMRPYIAAH 284
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + GN R ++ L F PG F++
Sbjct: 285 IASGGNMHHVTRHMLGLGLGF----PGARRFRQ 313
>gi|424071655|ref|ZP_17809078.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|407998743|gb|EKG39144.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
Length = 339
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 121/213 (56%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P+ V + + + +PV+VK RIG++ DSY +LCDF+
Sbjct: 109 GCPSDRVQNN-MIGACLMAHPELVADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFV 167
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + F +H+R A+L G+SP ENR IPPL+Y+ L DFPDL LNGGI T
Sbjct: 168 GKVQE-AGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKT 226
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ + L+ VM+GR AY NP Y L HVD ++G+ + ++R +E + Y A
Sbjct: 227 LEQCSEHLQT-FDGVMLGREAYHNP-YLLAHVDQQLFGSTAPVISRYDALESMRPYIAAH 284
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + GN R ++ L F PG F++
Sbjct: 285 IASGGNMHHVTRHMLGLGLGF----PGARRFRQ 313
>gi|241662836|ref|YP_002981196.1| tRNA-dihydrouridine synthase A [Ralstonia pickettii 12D]
gi|240864863|gb|ACS62524.1| TIM-barrel protein, yjbN family [Ralstonia pickettii 12D]
Length = 346
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 114/190 (60%), Gaps = 15/190 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +PK V + + + ++PV+VK RIG+D ++Y+ + D
Sbjct: 99 NCGCPSERVQ-RGAFGACLMAEPKLVAQGVKAMRDAVSIPVTVKHRIGIDAIETYDFVRD 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPL+YE Y L RDFP L LNGG+
Sbjct: 158 FVGTIAE-AGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQLKRDFPHLEILLNGGV 216
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+++++A L AH VM+GR AY +P + + D YGA + TR +V
Sbjct: 217 QTLEQIDAHL---AHVDGVMIGREAYHHP-HLMAAFDARYYGAGTEAPTRAEVE------ 266
Query: 181 GDAILGTYGN 190
DA++G G
Sbjct: 267 -DAMIGYVGR 275
>gi|90021133|ref|YP_526960.1| tRNA-dihydrouridine synthase A [Saccharophagus degradans 2-40]
gi|89950733|gb|ABD80748.1| TIM-barrel protein, yjbN family [Saccharophagus degradans 2-40]
Length = 331
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 107/180 (59%), Gaps = 4/180 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V +G G LM P+ V E + + ++PV+VK RIG+DD + Y L +
Sbjct: 99 NCGCPSDRVQ-NGMIGAILMSKPELVAECIDAMQKACDIPVTVKHRIGIDDMEDYEALSN 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+RKA L G+SP ENR IPPL+Y+ L + FP L +NGGI
Sbjct: 158 FVTTVAQ-TGCNTFIVHARKAWLKGLSPKENREIPPLRYDLVVQLKKAFPHLNIVINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
N +++ L VM+GR AY NP++ L VD ++G P+ R +V++K+ Y +
Sbjct: 217 NCLEQAKTLL-NDLDGVMIGREAYHNPFF-LADVDQKLFGTPNPSANRHEVLDKFIHYAE 274
>gi|425069696|ref|ZP_18472811.1| tRNA-dihydrouridine synthase A [Proteus mirabilis WGLW6]
gi|404596272|gb|EKA96793.1| tRNA-dihydrouridine synthase A [Proteus mirabilis WGLW6]
Length = 344
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 99/159 (62%), Gaps = 3/159 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+D+ DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMRDVVDIPVTVKTRIGIDNQDSYQFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS + FIIH+RKA L+G+SP ENR +PPL Y Y L RDF LT +NGGI
Sbjct: 170 FIDTVSRDNNCDTFIIHARKAWLSGLSPKENREVPPLDYPRVYQLKRDFSHLTMAINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 161
+++E L K VMVGR AYQNP L HVD ++
Sbjct: 230 KSLEEAQEHL-KYMDGVMVGREAYQNP-SILAHVDHVLF 266
>gi|425071149|ref|ZP_18474255.1| tRNA-dihydrouridine synthase A [Proteus mirabilis WGLW4]
gi|404599974|gb|EKB00427.1| tRNA-dihydrouridine synthase A [Proteus mirabilis WGLW4]
Length = 344
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 99/159 (62%), Gaps = 3/159 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+D+ DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMRDVVDIPVTVKTRIGIDNQDSYQFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS + FIIH+RKA L+G+SP ENR +PPL Y Y L RDF LT +NGGI
Sbjct: 170 FIDTVSRDNNCDTFIIHARKAWLSGLSPKENREVPPLDYPRVYQLKRDFSHLTMAINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 161
+++E L K VMVGR AYQNP L HVD ++
Sbjct: 230 KSLEEAQEHL-KYMDGVMVGREAYQNP-SILAHVDHVLF 266
>gi|297565479|ref|YP_003684451.1| yjbN family TIM-barrel protein [Meiothermus silvanus DSM 9946]
gi|296849928|gb|ADH62943.1| TIM-barrel protein, yjbN family [Meiothermus silvanus DSM 9946]
Length = 345
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 135/261 (51%), Gaps = 23/261 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G G FG LM +P V E + + +PV+ K R+GVDD + Y L
Sbjct: 94 NLGCPSERVQG-GGFGACLMKEPDLVAECFAAMREAVQLPVTAKHRLGVDDLEDYGYLAR 152
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K++S+ FI+H+RKA L G+SP ENR IP L+Y + Y L DFP L F LNGG+
Sbjct: 153 FVEKLASVG-VEVFIVHARKAWLQGLSPKENREIPELRYGWVYRLKEDFPHLIFVLNGGV 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE A L + VM+GRA Y++P + L D +G R QV + Y +
Sbjct: 212 KTLDEAGAHL-EHVDGVMLGRAVYEDP-FVLEEADRRFFGLEHRP-QRLQVAQAMIAYAE 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-----------KADAAFQTCKTV-K 230
A L + + + +L+ F + G ++R KA ++ + V K
Sbjct: 269 ARL----EEGVPLWSIARHMLNLFKGQRGGKRWRRYLSEHAIRPQAKAQVLWEALEQVTK 324
Query: 231 SFLEETIVAIPDSVLDSPIEE 251
+ TI ++P L+ P+++
Sbjct: 325 TPTLRTIASLPK--LEKPLQQ 343
>gi|197286568|ref|YP_002152440.1| tRNA-dihydrouridine synthase A [Proteus mirabilis HI4320]
gi|194684055|emb|CAR45390.1| tRNA-dihydrouridine synthase A [Proteus mirabilis HI4320]
Length = 344
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 99/159 (62%), Gaps = 3/159 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+D+ DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMRDVVDIPVTVKTRIGIDNQDSYQFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS + FIIH+RKA L+G+SP ENR +PPL Y Y L RDF LT +NGGI
Sbjct: 170 FIDTVSRDNNCDTFIIHARKAWLSGLSPKENREVPPLDYPRVYQLKRDFSHLTMAINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 161
+++E L K VMVGR AYQNP L HVD ++
Sbjct: 230 KSLEEAQEHL-KYMDGVMVGREAYQNP-SILAHVDHVLF 266
>gi|167626460|ref|YP_001676960.1| tRNA-dihydrouridine synthase A [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596461|gb|ABZ86459.1| tRNA-dihydrouridine synthase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 324
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 131/233 (56%), Gaps = 7/233 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG+SLM +P+ V + + N ++P+SVKCRIG D++DSY +L +
Sbjct: 92 NVGCPSERVK-KGNFGLSLMAEPELVANCVKAMKDNLDIPISVKCRIGYDNNDSYEELYN 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K + + IH+RK L+G+SP ENRTIP LKY+ Y + +DFP+L +NGG+
Sbjct: 151 FVNKQVQ-AGVDYLCIHARKGWLSGLSPKENRTIPELKYDVVYNIKKDFPNLELGINGGV 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L K VM+GR AY NP + D Y P + ++ +V + Y
Sbjct: 210 TTIEDTQEHL-KYVDSVMIGREAYHNPM-LFKNFDNLFYNQPINDISPLEVAYEMAEYIK 267
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSFLE 234
L + N + + ++ K L+ F+ +F+R ++ A + V +FL+
Sbjct: 268 IQLNSDPNMK--LNNITKHTLNLFNGLHNAKVFRRYLSENATKKDANVDTFLK 318
>gi|227357643|ref|ZP_03841996.1| tRNA-dihydrouridine synthase A [Proteus mirabilis ATCC 29906]
gi|227162353|gb|EEI47357.1| tRNA-dihydrouridine synthase A [Proteus mirabilis ATCC 29906]
Length = 344
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 99/159 (62%), Gaps = 3/159 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+D+ DSY LCD
Sbjct: 111 NVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMRDVVDIPVTVKTRIGIDNQDSYQFLCD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS + FIIH+RKA L+G+SP ENR +PPL Y Y L RDF LT +NGGI
Sbjct: 170 FIDTVSRDNNCDTFIIHARKAWLSGLSPKENREVPPLDYPRVYQLKRDFSHLTMAINGGI 229
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 161
+++E L K VMVGR AYQNP L HVD ++
Sbjct: 230 KSLEEAQEHL-KYMDGVMVGREAYQNP-SILAHVDHVLF 266
>gi|284006504|emb|CBA71765.1| tRNA-dihydrouridine synthase A [Arsenophonus nasoniae]
Length = 344
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 119/220 (54%), Gaps = 17/220 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + +P++VK RIGVDD DSY L D
Sbjct: 111 NIGCPSDRVQ-NGRFGACLMREGGLVADCIKAMQDAATIPITVKTRIGVDDDDSYAFLTD 169
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI K+ + S R FIIH+RKA L+G+SP +NR IPPL Y Y L +DFP LT +NGGI
Sbjct: 170 FIDKIVTDSQCRLFIIHARKAWLSGLSPKQNREIPPLDYLRVYQLKKDFPQLTIVVNGGI 229
Query: 123 NTVDEVNAALRKGAHH---VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQI 179
+DE L HH VM+GR AYQNP L VD + S + V+
Sbjct: 230 KNIDEAKQHL----HHLDGVMIGREAYQNP-ALLTQVDVEFFDQRSLVIDPIIAVQTMYP 284
Query: 180 YGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
Y + L GTY + + + +L F + PG ++R
Sbjct: 285 YIERELKQGTY------LGHITRHMLGIFQAIPGARQWRR 318
>gi|330825043|ref|YP_004388346.1| yjbN family TIM-barrel protein [Alicycliphilus denitrificans K601]
gi|329310415|gb|AEB84830.1| TIM-barrel protein, yjbN family [Alicycliphilus denitrificans K601]
Length = 316
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 117/217 (53%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIG+D + Y + D
Sbjct: 85 NCGCPSERVQ-RGAFGACLMNEPRLVADCVKAMVDVVDMPVTVKHRIGIDQTEDYGFVRD 143
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + R FI+H+R A L G+SP ENR IPPL+YE L DFP LT +NG +
Sbjct: 144 FVGTVAD-AGCRVFIVHARNAWLKGLSPKENREIPPLRYEVAARLKSDFPQLTIAINGSL 202
Query: 123 NTVDEV--NAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T V AL G VMVGR AY NPW+ L D +GA LTR QV E+ Y
Sbjct: 203 QTDAAVLEQLALVDG---VMVGREAYHNPWW-LTRWDELFFGAKPGTLTREQVEEEMVAY 258
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ +G H V + +L + PG +++
Sbjct: 259 MEREAAAHGT---HWYAVARHMLGLRNGLPGARRWRQ 292
>gi|319762963|ref|YP_004126900.1| tim-barrel protein, yjbn family [Alicycliphilus denitrificans BC]
gi|317117524|gb|ADV00013.1| TIM-barrel protein, yjbN family [Alicycliphilus denitrificans BC]
Length = 316
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 117/217 (53%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIG+D + Y + D
Sbjct: 85 NCGCPSERVQ-RGAFGACLMNEPRLVADCVKAMVDVVDMPVTVKHRIGIDQTEGYGFVRD 143
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + R FI+H+R A L G+SP ENR IPPL+YE L DFP LT +NG +
Sbjct: 144 FVGTVAD-AGCRVFIVHARNAWLKGLSPKENREIPPLRYEVAARLKSDFPQLTIAINGSL 202
Query: 123 NTVDEV--NAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T V AL G VMVGR AY NPW+ L D +GA LTR QV E+ Y
Sbjct: 203 QTDAAVLEQLALVDG---VMVGREAYHNPWW-LTRWDELFFGAKPGTLTREQVEEEMVAY 258
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ +G H V + +L + PG +++
Sbjct: 259 MEREAAAHGT---HWYAVARHMLGLRNGLPGARRWRQ 292
>gi|399911687|ref|ZP_10780001.1| tRNA-dihydrouridine synthase A [Halomonas sp. KM-1]
Length = 319
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 109/215 (50%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P V A+ + +PV+VKCRIG+DD D L
Sbjct: 81 NVGCPSDRVQNN-MIGACLMGHPDKVAAAVRAMREAVKIPVTVKCRIGIDDQDEDADLER 139
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V+ + FI+H+RKA L G+SP ENR IPPL Y + L P+L +NGGI
Sbjct: 140 FIAQVAD-AGCEVFIVHARKAWLQGLSPKENRDIPPLNYSRVHRLKASRPELHIGINGGI 198
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE L VMVGR AYQNPW G VD AIYG +R ++ Y
Sbjct: 199 KTLDECREQL-DSVDSVMVGREAYQNPWLLAG-VDRAIYGVEGPAESRHAAARAFRPY-- 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + V + LL F +PG F+R
Sbjct: 255 --IARRLEEGAKLNHVTRHLLGLFQGQPGGRRFRR 287
>gi|348618093|ref|ZP_08884625.1| tRNA-dihydrouridine synthase A [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816605|emb|CCD29291.1| tRNA-dihydrouridine synthase A [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 334
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 122/220 (55%), Gaps = 18/220 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG +LM P V E + + ++PV+VK RIG+DD + Y + D
Sbjct: 87 NCGCPSARVQ-RGVFGAALMAQPLRVAECVRAMRDAVSIPVTVKHRIGLDDIEEYAFVRD 145
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ + + FI+H+R A+L+G++P ENR++PPL+YE Y L RDFP L LNGG+
Sbjct: 146 FIGTVAH-AGCQTFIVHARSAVLHGLNPKENRSVPPLRYEVAYRLKRDFPALEIILNGGV 204
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+ +V R AH VM+GRAAY NPW G +D Y A + R V+ + Y
Sbjct: 205 TTLAQVE---RHLAHIDGVMLGRAAYHNPWLLAG-IDHRFYQANAPVAQRADVIPALKAY 260
Query: 181 GDAILGTYGNNRPH---VRDVMKPLLHFFHSEPGNGLFKR 217
Y ++ V + +L +H PG ++R
Sbjct: 261 -------YARESARGAPLKAVTRHILGLYHGVPGARRWRR 293
>gi|415944436|ref|ZP_11556234.1| tRNA-dihydrouridine synthase A [Herbaspirillum frisingense GSF30]
gi|407758516|gb|EKF68332.1| tRNA-dihydrouridine synthase A [Herbaspirillum frisingense GSF30]
Length = 323
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 123/219 (56%), Gaps = 8/219 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + + + ++ V+VK RIG+D +SY+ + D
Sbjct: 80 NCGCPSERVQ-KGAFGACLMGEPALVADCVKAMRDAVSIDVTVKHRIGIDQVESYDFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +++ + + FI+H+R A+L G+SP ENR IPPLKY Y Y L +DFP+L +NGGI
Sbjct: 139 FVGQIAD-AGCKTFIVHARNAILKGLSPKENREIPPLKYHYAYQLKKDFPELEILINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGL--TRRQVVEKYQIY 180
T+ E++ L VM+GR AY NP Y + D YG G +R +V+E Y
Sbjct: 198 KTLPEIDEHLLH-VDGVMLGREAYHNP-YLMAAFDARYYGDLEGGRQPSRAEVIEAMLPY 255
Query: 181 GDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKR 217
L +G+N +R + + +L PG F++
Sbjct: 256 IKRQLELHGDNGRGLRLNSITRHMLGLLTGMPGARAFRQ 294
>gi|423201194|ref|ZP_17187774.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AER39]
gi|404617766|gb|EKB14700.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AER39]
Length = 328
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + + + ++PV+VK RIG+DD DSY L
Sbjct: 89 NVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMRDVVDIPVTVKTRIGIDDQDSYEFLQA 147
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V + FI+H+RKA L+G+SP ENR IPPL Y Y + +D+PDLT LNGG+
Sbjct: 148 FIEQVRD-AGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRVKQDYPDLTIALNGGV 206
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L+ VM+GR AYQNP Y L VD ++G ++ +R +VV Y +
Sbjct: 207 TSMEQTLEHLQH-VDGVMMGREAYQNP-YILAQVDNLVFGQNNAVPSRHEVVRMMLPYIE 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GN H + + +L F + G ++R
Sbjct: 265 QELAK-GNYLSH---MTRHMLGLFQNMQGARAWRR 295
>gi|422632556|ref|ZP_16697722.1| tRNA-dihydrouridine synthase A, partial [Pseudomonas syringae pv.
pisi str. 1704B]
gi|330942603|gb|EGH45179.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. pisi str.
1704B]
Length = 299
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 111/186 (59%), Gaps = 4/186 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P+ V + + + +PV+VK RIG++ DSY +LCDF+
Sbjct: 109 GCPSDRVQNN-MIGACLMAHPELVADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFV 167
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + F +H+R A+L G+SP ENR IPPL+Y+ L DFPDL LNGGI T
Sbjct: 168 GKVQE-AGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKT 226
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ + L+ VM+GR AY NP Y L HVD ++G+ + ++R +E + Y A
Sbjct: 227 LEQCSEHLQT-FDGVMLGREAYHNP-YLLAHVDQQLFGSTAPVISRYDALESMRPYIAAH 284
Query: 185 LGTYGN 190
+ + GN
Sbjct: 285 IASGGN 290
>gi|89054629|ref|YP_510080.1| tRNA-dihydrouridine synthase A [Jannaschia sp. CCS1]
gi|88864178|gb|ABD55055.1| tRNA-U16,U17-dihydrouridine synthase [Jannaschia sp. CCS1]
Length = 329
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 111/215 (51%), Gaps = 6/215 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V GCFG LM P V E + + V V+VKCRIGVDD D + L
Sbjct: 93 NVGCPSDRVQS-GCFGAVLMRQPDLVAECVRAMRDECPVDVTVKCRIGVDDQDPEDALPR 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + + TR IH+RKA L G+SP +NR +PPL Y + + + FP L +LNGGI
Sbjct: 152 FLEAMVTAGVTR-VTIHARKAWLQGLSPKQNRDVPPLDYPLVFRMKQMFPQLHISLNGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E A L G VM+GRAAY P L D I+G + + +V Y D
Sbjct: 211 ATLEEAGAHLEDGLDGVMIGRAAYHTPAEVLLQADQRIFGHATPARSAEEVALLMLPYID 270
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L G + + + +L F PG +KR
Sbjct: 271 AHLTDGGR----LNQITRHILGLFAGRPGARGWKR 301
>gi|88811969|ref|ZP_01127222.1| Dihydrouridine synthase TIM-barrel protein yjbN [Nitrococcus
mobilis Nb-231]
gi|88790853|gb|EAR21967.1| Dihydrouridine synthase TIM-barrel protein yjbN [Nitrococcus
mobilis Nb-231]
Length = 295
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 116/214 (54%), Gaps = 8/214 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P V E ++ + T +PV+VK RIG+D D Y L +
Sbjct: 55 NVGCPSERVQA-GRFGACLMAEPNLVAELVAAMRQATTLPVTVKTRIGIDQQDDYAVLAE 113
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + R FI+H+RKA L G+SP ENR PPL+Y+ + L RDFP+L LNGG+
Sbjct: 114 FVEYVAN-AGCRTFIVHARKAWLKGLSPKENRARPPLRYDRVWRLKRDFPELEIVLNGGM 172
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L VM GR AY+NP Y L D ++G TR ++V Y Y +
Sbjct: 173 RTLEQAEGQL-ASVDGVMFGREAYRNP-YLLAKADVWLFGDTRPVPTRHELVHAYLPYIE 230
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 216
L + + + LL + PG ++
Sbjct: 231 RQLAAGAR----LSCMTRHLLGLYQGMPGARAWR 260
>gi|374584018|ref|ZP_09657110.1| tRNA-U16,U17-dihydrouridine synthase [Leptonema illini DSM 21528]
gi|373872879|gb|EHQ04873.1| tRNA-U16,U17-dihydrouridine synthase [Leptonema illini DSM 21528]
Length = 353
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 134/255 (52%), Gaps = 20/255 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH-----DSY 57
+CGCPS +V HG FG SLM DP V + + ++PV+VK RIG+ + +SY
Sbjct: 88 NCGCPSERVE-HGNFGASLMTDPLHVRRIVEAMNQAVSIPVTVKHRIGIRERSGVGRESY 146
Query: 58 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 117
++L F+ HFI+H+R A+L ++PA+NR+IPPL+Y+ Y L +DFP+L
Sbjct: 147 DELKQFVSACVD-GGVSHFIVHARIAILGKLNPAQNRSIPPLQYDTVYRLKQDFPELFIE 205
Query: 118 LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGA--PSSGLTRRQVVE 175
+NGGI T+DE L K VM+GRAA P + D IYG P + + + VV
Sbjct: 206 INGGIRTLDEAELHL-KHVDGVMIGRAACDTP-FLFAEADHRIYGTQNPETAESEKAVVR 263
Query: 176 KYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK-ADAAF----QTCKTVK 230
Y L + V V++ + F+ PG LF+R+ A+ F T T+
Sbjct: 264 ALLPY----LHRQMDEGIPVHHVLRHAANLFYGRPGARLFRRRLAEEIFIRRDWTTATID 319
Query: 231 SFLEETIVAIPDSVL 245
+EE + IPD +
Sbjct: 320 EAIEELLSCIPDDAV 334
>gi|410611553|ref|ZP_11322651.1| tRNA-dihydrouridine synthase A [Glaciecola psychrophila 170]
gi|410168971|dbj|GAC36540.1| tRNA-dihydrouridine synthase A [Glaciecola psychrophila 170]
Length = 338
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V ++ + A ++PV+VK RIG+DD D Y L
Sbjct: 93 NVGCPSDRVQ-NGRFGACLMAEPETVAACINTMQAEVDIPVTVKSRIGIDDMDEYEDLTR 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V + S FI+H+RKA L G+SP +NR +PPL Y+ Y L + FP+L +LNGG+
Sbjct: 152 FI-EVVAASGCNTFIVHARKAWLKGLSPKQNRDVPPLMYDRVYQLKQQFPELHISLNGGV 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+ L VM+GR Y NP Y L VD Y S TR +VV Y +
Sbjct: 211 KTLDDAQLHLNH-LDGVMIGREVYSNP-YILAEVDKRFYQDHSVSKTRPEVVLAMLPYVE 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ RP ++ + +L F + G +++R
Sbjct: 269 QQIAL--GARPW--NIARHMLGLFQGQAGGRIWRR 299
>gi|344171567|emb|CCA84183.1| tRNA-dihydrouridine synthase A [Ralstonia syzygii R24]
Length = 302
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 128/237 (54%), Gaps = 13/237 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +PK V + + + ++PV+VK RIG+D ++Y+ + D
Sbjct: 55 NCGCPSERVQ-RGAFGACLMAEPKLVADCVKAMRDTVSIPVTVKHRIGIDAIETYDFVRD 113
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPL+YE Y L RDFP L LNGG+
Sbjct: 114 FVGTIAE-AGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQLKRDFPQLEILLNGGV 172
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++++A L VM+GR AY +P + + D YGA + TR +V + Y
Sbjct: 173 QTLEQIDAHLTH-LDGVMIGREAYHHP-HLMASFDARYYGADTVAPTRAEVEDAMVDY-- 228
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-----KADAAFQTCKTVKSFLE 234
+G + + ++ +L + G ++R KA +T ++ E
Sbjct: 229 --IGRWVERGGYAGAAVRHMLGLYRGVAGARGWRRVLSDAKALGRVKTLDDARALFE 283
>gi|167646006|ref|YP_001683669.1| tRNA-dihydrouridine synthase A [Caulobacter sp. K31]
gi|167348436|gb|ABZ71171.1| TIM-barrel protein, yjbN family [Caulobacter sp. K31]
Length = 325
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 121/215 (56%), Gaps = 13/215 (6%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LM +PK V + M+ + A +VPV+VKCRIGVDD D L + +
Sbjct: 82 GCPSDRVQS-GRFGACLMREPKLVADCMAAMTAAVSVPVTVKCRIGVDDQDPEQSLFELV 140
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+S+ + HF++H+RKA L G+SP ENR +PPL Y + L + P LT +NGGI
Sbjct: 141 -DLSAQAGVTHFVVHARKAWLKGLSPKENRDVPPLDYPLVHRLKAERPALTIVINGGIPD 199
Query: 125 VDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+D A+L + AH VM+GRAAY P LG VD ++G + + VE Y+ Y
Sbjct: 200 LD---ASLVQLAHVDGVMLGRAAYHEPGL-LGQVDRRVFG-EGRDVDAFEAVELYKSYMA 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ L H+ + + +L FH PG ++R
Sbjct: 255 SQLAAG----VHLTAMSRHMLGLFHGMPGARAWRR 285
>gi|414163014|ref|ZP_11419261.1| tRNA dihydrouridine synthase A [Afipia felis ATCC 53690]
gi|410880794|gb|EKS28634.1| tRNA dihydrouridine synthase A [Afipia felis ATCC 53690]
Length = 319
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 116/213 (54%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LM P+ VGE ++ + A VPV+VKCRIG+D+ DS Q D +
Sbjct: 82 GCPSDRVQ-DGRFGACLMAVPQLVGECVAAMKAAVRVPVTVKCRIGIDNQDS-EQALDAL 139
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+ + I+H+RKA L G+SP ENR IPPL Y+ Y L PD ++NGGI +
Sbjct: 140 ARSVVTAGADALIVHARKAWLEGLSPKENRDIPPLDYDRVYRLKTAMPDTMISINGGITS 199
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ A L+ VM+GRAAYQ PW L VD ++G P+ + + +E Y +
Sbjct: 200 IEQAKAHLQH-VDGVMMGRAAYQEPWRLLA-VDPELFGVPAPHASMHEAIESLFPYIERE 257
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
R H + + ++ FH PG F+R
Sbjct: 258 RAR--GMRLHA--ITRHMVGAFHGIPGARAFRR 286
>gi|330503878|ref|YP_004380747.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina NK-01]
gi|328918165|gb|AEB58996.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina NK-01]
Length = 312
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 119/213 (55%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P V + + + ++PV+VK RIG++ DSY +LCDF+
Sbjct: 82 GCPSDRVQNN-MIGACLMGHPALVADCVKAMQDAVSIPVTVKHRIGINGRDSYAELCDFV 140
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+V + R F +H+R A+L G+SP ENR +PPL+Y+ L +DFPDL LNGGI T
Sbjct: 141 GQVRD-AGCRSFTVHARIAILEGLSPKENREVPPLRYDVAAQLKQDFPDLEIILNGGIKT 199
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E L + VM+GR AY NP Y L VD+ ++G +G+TR + + + Y +
Sbjct: 200 IEECEQHL-QSFDGVMLGREAYHNP-YLLAQVDSRLFGTADTGITRMEALLALKPYVEQH 257
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + V + +L PG F++
Sbjct: 258 LREGGT----LHHVSRHVLGLAQGFPGARRFRQ 286
>gi|408375603|ref|ZP_11173265.1| tRNA-dihydrouridine synthase A [Alcanivorax hongdengensis A-11-3]
gi|407764520|gb|EKF72995.1| tRNA-dihydrouridine synthase A [Alcanivorax hongdengensis A-11-3]
Length = 310
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 126/229 (55%), Gaps = 15/229 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G G LM +P+ V + +S + A T PV+VK RIG+DD D Y L
Sbjct: 80 NVGCPSDRVQ-QGKIGAVLMAEPQRVADCVSAMQAATCAPVTVKTRIGIDDQDDYAFLHR 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + + T IH+RKA+L+G+SP ENR IPPL Y+ YA+ + FP L LNGG+
Sbjct: 139 FVEHMQAAGCTS-LTIHARKAILSGLSPKENREIPPLIYQRAYAIKQAFPQLEVILNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ +V L + VM+GR AYQNP++ L D ++ P +R+QV E + Y +
Sbjct: 198 KSLQDVADHL-EDVDGVMIGREAYQNPYF-LAQADALLFDDPHPIPSRQQVAEAFIPYLE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQ 224
G+ H + ++ +L F +PG F+R KADA Q
Sbjct: 256 RRFAA-GH---HPKHALRHILSLFQGQPGARAFRRHLSENMHKADATPQ 300
>gi|254473354|ref|ZP_05086751.1| tRNA-dihydrouridine synthase A [Pseudovibrio sp. JE062]
gi|211957470|gb|EEA92673.1| tRNA-dihydrouridine synthase A [Pseudovibrio sp. JE062]
Length = 348
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 126/238 (52%), Gaps = 8/238 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LML+P V E ++ + ++PV+ KCRIGVDD + L
Sbjct: 100 NVGCPSDRVQS-GKFGACLMLEPDLVAECIAAMKDVVSIPVTTKCRIGVDDQEPEEALNA 158
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
KV + + T +H+RKA L G+SP ENR +PPL Y+ Y L + PD+ +NGG+
Sbjct: 159 LADKVIA-AGTDALWVHARKAWLKGLSPKENRDVPPLDYDLVYRLKQRLPDVFIGINGGV 217
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E +A L K VM+GRAAYQNP L VD +YG + +T + ++ Y+ Y +
Sbjct: 218 ATLEETSAHLEK-LDGVMMGRAAYQNP-MLLAEVDRVVYGEDGTAITPVEAMDVYRGYIE 275
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
L T G + + + +L + PG F+R LEE + A+
Sbjct: 276 NEL-TAGTK---LASITRHILGTYQGVPGARHFRRIMTVEANKTGAGIEVLEEALAAV 329
>gi|407696288|ref|YP_006821076.1| tRNA-dihydrouridine synthase A [Alcanivorax dieselolei B5]
gi|407253626|gb|AFT70733.1| tRNA-dihydrouridine synthase A [Alcanivorax dieselolei B5]
Length = 328
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 120/238 (50%), Gaps = 8/238 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G G LM +P V + +A + VPV+VK RIG+DD D Y L
Sbjct: 98 NVGCPSDRVQ-QGKIGAVLMAEPDLVARCVEAMARVSAVPVTVKTRIGIDDQDDYPFLQR 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ S + R IH+RKA+LNG+SP ENR IPPL YE YA+ + FP L LNGG+
Sbjct: 157 FVARMDS-AGCRSLTIHARKAILNGLSPKENREIPPLIYERAYAIKQAFPHLEVILNGGL 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ V L + +M+GR AY NPW L +D ++G P+ R QV + Y
Sbjct: 216 RDLPSVLHHLDQ-VDGLMIGREAYGNPW-CLAGLDATVFGDPAPQPDRHQVARAFLPY-- 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
L H + V++ L+ F PG ++R T E+ + +
Sbjct: 272 --LEQRYAGGCHPKHVLRHALNLFQGIPGARAYRRHLSENMHKADTTPKVFEDALALV 327
>gi|333891627|ref|YP_004465502.1| tRNA-dihydrouridine synthase A [Alteromonas sp. SN2]
gi|332991645|gb|AEF01700.1| tRNA-dihydrouridine synthase A [Alteromonas sp. SN2]
Length = 308
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 5/216 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P+ V + + + A ++PV+VKCRIG+DD D Y
Sbjct: 54 NVGCPSDRVK-NGSFGACLMAQPEVVADNVKAMQAEVDIPVTVKCRIGIDDMDEYKDFAR 112
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V++ + FI+H+RKA L G+SP ENR IPPL Y + L P+L+ ++NGGI
Sbjct: 113 FIDIVAT-AGCDTFIVHARKAWLQGLSPKENRDIPPLNYPRVHMLKESHPELSISINGGI 171
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPS-SGLTRRQVVEKYQIYG 181
++ + L K VM+GR Y NP Y L VD I+G S ++RR VV K Q Y
Sbjct: 172 KSLADAQEQL-KYVDGVMIGREVYANP-YILSTVDAEIFGDNSVQPISRRDVVLKMQQYI 229
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + + V + +L + + G +++R
Sbjct: 230 EKCIARQDDPYFKPWHVARHMLGLYQGQAGGRIWRR 265
>gi|238918205|ref|YP_002931719.1| Dihydrouridine synthase (Dus) [Edwardsiella ictaluri 93-146]
gi|238867773|gb|ACR67484.1| Dihydrouridine synthase (Dus) [Edwardsiella ictaluri 93-146]
Length = 349
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 117/213 (54%), Gaps = 7/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + + V + + + ++PV+VK RIG+D+ DSY LCDFI
Sbjct: 116 GCPSDRVQ-NGRFGACLMGEAQLVADCVKAMRDVVSIPVTVKTRIGIDEQDSYPFLCDFI 174
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ FI+H+RKA L+G+SP ENR +PPL Y Y L +DFP LT LNGG+
Sbjct: 175 GTVAGQGECDTFIVHARKAWLSGLSPRENREVPPLDYPRVYRLKQDFPHLTIALNGGVKR 234
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+DE A L+ VMVGR AY NP L VD+ ++ A ++ VV Y
Sbjct: 235 LDEARAHLQH-VDGVMVGREAYHNPG-ILAQVDSQLFDADAAVPDSVAVVRALYPY---- 288
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+G ++ + + +L F PG ++R
Sbjct: 289 IGRELAQGTYLGHITRHILGLFQGIPGARQWRR 321
>gi|254466832|ref|ZP_05080243.1| tRNA-dihydrouridine synthase A [Rhodobacterales bacterium Y4I]
gi|206687740|gb|EDZ48222.1| tRNA-dihydrouridine synthase A [Rhodobacterales bacterium Y4I]
Length = 316
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 116/215 (53%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P+ V + ++ + +V V+VKCRIGVD+ + L +
Sbjct: 80 NCGCPSDRVQS-GAFGAVLMQTPELVADCVAAMRETVDVDVTVKCRIGVDEQEPEEVLPE 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ K+ + R IH+RKA L G+SP ENR IPPL YE + + FPDL ++NGGI
Sbjct: 139 FLEKIRAAGCGR-VTIHARKAWLQGLSPKENRDIPPLDYELVHRMKAAFPDLHVSINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E A L +G VMVGRAAY P L D IYG + + V + Y +
Sbjct: 198 ATLAEAKAHLDRGLDGVMVGRAAYHQPADVLCAADPEIYGTGTVS-DPAEAVRQMLPYIE 256
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + + + + +L F +PG ++R
Sbjct: 257 ARL----SEGARLNQITRHMLGLFAGKPGARQWRR 287
>gi|329905074|ref|ZP_08274002.1| tRNA-dihydrouridine synthase A [Oxalobacteraceae bacterium
IMCC9480]
gi|327547746|gb|EGF32522.1| tRNA-dihydrouridine synthase A [Oxalobacteraceae bacterium
IMCC9480]
Length = 295
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 122/219 (55%), Gaps = 8/219 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++ V+VK RIG+D ++SY + D
Sbjct: 55 NCGCPSERVQ-KGAFGACLMAEPQLVADCVKAMRDAVSIDVTVKHRIGIDKNESYAFMRD 113
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ T FI+H+R A+L G+SP ENR +PPL+Y+ Y L R+FPDL +NGGI
Sbjct: 114 FVGTVAEAGCTT-FIVHARNAILKGLSPKENREVPPLRYDAVYQLKREFPDLEIIINGGI 172
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T E++ L+ VM+GR AY NP+ G D Y P++ TR +V+E Y
Sbjct: 173 KTEAEIDLHLQH-VDGVMLGREAYHNPYLMAG-FDARYYDDPATPRTRTEVLEAMLPYIR 230
Query: 183 AILGTYGN----NRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ LG + P + + + +L PG F++
Sbjct: 231 SQLGPTPSIPLKAGPRLNSITRHMLGLMAGLPGARHFRQ 269
>gi|261855785|ref|YP_003263068.1| dihydrouridine synthase [Halothiobacillus neapolitanus c2]
gi|261836254|gb|ACX96021.1| dihydrouridine synthase DuS [Halothiobacillus neapolitanus c2]
Length = 357
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 136/247 (55%), Gaps = 9/247 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P+ V + + + A+ +VPV++K R+G+D DS+
Sbjct: 95 NVGCPSDRVQ-NGSFGACLMATPEVVAKGVRAMQASVDVPVTLKTRVGIDRSDSFEAFAR 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ FIIH+RKA L+G+SP ENR IPPL+ ++ Y + +P+LTF LNG +
Sbjct: 154 FIDIVAGQGGCEVFIIHARKAWLDGLSPKENREIPPLRRDFVYRIQDAYPELTFVLNGKL 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYG 181
T+ E+ A L + +MVGRAAYQ+ W L VD ++ + TR VV+ Y+ Y
Sbjct: 214 ETIPEMQAELARVPGGIMVGRAAYQHVDW--LRFVDQMLFDHSAPIPTRSAVVQGYRAYM 271
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + + ++KPLL F+ PG F+R KT L+E + IP
Sbjct: 272 LQAL----ESGTPMPPLLKPLLTLFNGLPGARAFRRHLSEQGPRRKTDIHVLDEALDLIP 327
Query: 242 D-SVLDS 247
D LDS
Sbjct: 328 DLDALDS 334
>gi|114569505|ref|YP_756185.1| tRNA-dihydrouridine synthase A [Maricaulis maris MCS10]
gi|114339967|gb|ABI65247.1| tRNA-U16,U17-dihydrouridine synthase [Maricaulis maris MCS10]
Length = 353
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 115/213 (53%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V G FG LM +P V + ++ + +VPV+VKCRIGVDD + L +
Sbjct: 119 GCPSDRVQS-GRFGACLMQEPDLVADCVAAMQDAVSVPVTVKCRIGVDDQEPEQALFTLV 177
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V++ T F +H+RKA L G+SP ENR++PPL Y + L + P+L LNGG+
Sbjct: 178 DTVAARGVT-SFAVHARKAWLKGLSPKENRSVPPLDYALVHRLKAERPELEIILNGGLQD 236
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+D + G M+GRAAY PW L VD+A++G TR Q + ++ Y A
Sbjct: 237 LDHAISE-STGLDGAMIGRAAYHTPWI-LARVDSAVFGETDPVATRSQALAAFRPYIAAC 294
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + D+ + ++ + EPG ++R
Sbjct: 295 LDEGGR----LHDITRHMMGLYAGEPGARQWRR 323
>gi|443471636|ref|ZP_21061697.1| tRNA dihydrouridine synthase A [Pseudomonas pseudoalcaligenes
KF707]
gi|443473202|ref|ZP_21063227.1| tRNA dihydrouridine synthase A [Pseudomonas pseudoalcaligenes
KF707]
gi|442901737|gb|ELS27526.1| tRNA dihydrouridine synthase A [Pseudomonas pseudoalcaligenes
KF707]
gi|442903765|gb|ELS29056.1| tRNA dihydrouridine synthase A [Pseudomonas pseudoalcaligenes
KF707]
Length = 312
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 106/178 (59%), Gaps = 4/178 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P V + + + +PV+VK RIG++ DSY +LCD
Sbjct: 80 NVGCPSDRVQNN-MIGACLMGHPALVADCVKAMLDAVEIPVTVKHRIGINGRDSYAELCD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V + + F +H+R A+L G+SP ENR IPPL+YE L +DFPDL LNGGI
Sbjct: 139 FVGQVRE-AGCQSFTVHARIAILEGLSPKENREIPPLRYEVAAQLKQDFPDLEIILNGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+DE A L VM+GR AY NP Y L VD A++G+ + + R + +E + Y
Sbjct: 198 KTLDECRAHLEH-FDGVMLGREAYHNP-YLLAEVDAALFGSDTPPIGRAEALEAIRPY 253
>gi|187928263|ref|YP_001898750.1| tRNA-dihydrouridine synthase A [Ralstonia pickettii 12J]
gi|187725153|gb|ACD26318.1| TIM-barrel protein, yjbN family [Ralstonia pickettii 12J]
Length = 327
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 15/190 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +PK V + ++ + ++PV+VK RIG+D ++Y+ + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMAEPKLVAQGVTAMRDAVSIPVTVKHRIGIDAIETYDFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPL+YE Y L RDFP L LNGG+
Sbjct: 139 FVGTIAE-AGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQLKRDFPHLEILLNGGV 197
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+++++ L AH VM+GR AY +P + + D YGA + TR +V
Sbjct: 198 QTLEQIDTHL---AHVDGVMIGREAYHHP-HLMAAFDARYYGAGTEAPTRAEVE------ 247
Query: 181 GDAILGTYGN 190
DA++G G
Sbjct: 248 -DAMIGYVGR 256
>gi|344170016|emb|CCA82390.1| tRNA-dihydrouridine synthase A [blood disease bacterium R229]
Length = 326
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 130/239 (54%), Gaps = 17/239 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +PK V + + + ++PV+VK RIG+D ++Y+ + D
Sbjct: 79 NCGCPSERVQ-RGAFGACLMAEPKLVADCVKAMRDTVSIPVTVKHRIGIDAIETYDFVRD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPL+YE Y L RDFP L LNGG+
Sbjct: 138 FVGTIAE-AGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQLKRDFPQLEILLNGGV 196
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
+++++A L AH VM+GR AY++P + + D YGA + TR +V + Y
Sbjct: 197 QALEQIDAHL---AHVDGVMIGREAYRHP-HLMASFDARYYGADTVAPTRAEVEDAMVDY 252
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-----KADAAFQTCKTVKSFLE 234
+G + + ++ +L + G ++R KA +T ++ E
Sbjct: 253 ----IGRWVERGGYAGAAVRHMLGLYRGVAGARGWRRVLSDAKALGRVKTLDDARALFE 307
>gi|241758541|ref|ZP_04756659.1| tRNA-dihydrouridine synthase A [Neisseria flavescens SK114]
gi|241321314|gb|EER57468.1| tRNA-dihydrouridine synthase A [Neisseria flavescens SK114]
Length = 334
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSP+V G FG LM D V + ++ + +PV+VK RIGVD Y + D
Sbjct: 95 NCGCPSPRVQ-KGAFGACLMNDVDLVADCLNAMQDVVEIPVTVKHRIGVDRQTEYQVVAD 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + + R FI+H+R A L+G+SP ENR +PPLKYEY Y L ++FPDL +NGGI
Sbjct: 154 FVGTLREKTACRTFIVHARNAWLDGLSPKENREVPPLKYEYVYRLKQEFPDLEILINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNP 149
T +E+ L K VM+GR AY NP
Sbjct: 214 TTNEEIAEHL-KFVDGVMIGREAYHNP 239
>gi|429771169|ref|ZP_19303199.1| tRNA dihydrouridine synthase A [Brevundimonas diminuta 470-4]
gi|429182388|gb|EKY23493.1| tRNA dihydrouridine synthase A [Brevundimonas diminuta 470-4]
Length = 331
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 121/233 (51%), Gaps = 16/233 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V + M+ I +VP +VKCRIGVDD D L
Sbjct: 80 NVGCPSDRVQS-GRFGACLMREPELVADCMAAIKEAVSVPATVKCRIGVDDQDPEISLFA 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+ S+ + HF++H+RKA L G+SP ENR +PPL Y+ L R+ P L +NGGI
Sbjct: 139 TV-DASAAAGITHFVVHARKAWLKGLSPKENRDVPPLDYDLVRRLKRERPHLAICINGGI 197
Query: 123 NTVDEVNAALRKG----AHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQ 178
+D+ A L+ VM+GRAAY P LG VD I+G + + + +E+Y+
Sbjct: 198 GDLDQAEAHLKADDGVQLDGVMLGRAAYHEP-ALLGQVDRRIFGEATPDVDVFEALERYR 256
Query: 179 IYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKS 231
Y A L N + + + +L H G F+R T + VKS
Sbjct: 257 SYMAARLDEGAN----LASMTRHMLGLMHGRAGARAFRR-----ILTVEGVKS 300
>gi|421615733|ref|ZP_16056753.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri KOS6]
gi|409782269|gb|EKN61834.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri KOS6]
Length = 311
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 126/238 (52%), Gaps = 8/238 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P+ V + + + + V+VK RIG++ DSY +LCD
Sbjct: 79 NVGCPSDRVQNN-MIGACLMGHPQLVADCVKAMRDAVGIEVTVKHRIGINGRDSYAELCD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V + R F +H+R A+L G+SP +NR +PPL+Y+ L +DFPDL LNGGI
Sbjct: 138 FVGQVRE-AGCRSFTVHARIAILEGLSPKQNREVPPLRYDIAAQLKQDFPDLELILNGGI 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE A L+ VM+GR AY NP Y L HVD A++G+ + + R Q + + Y +
Sbjct: 197 KTLDECRAHLQT-FDGVMLGREAYHNP-YLLAHVDQALFGSDTPVIGRAQALRNMRPYIE 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
L G + V + +L PG F++ + L++ + +
Sbjct: 255 RHLAEGGA----MHHVTRHVLGLGQGFPGARRFRQLLSVDIHKASQPLALLDQAVALL 308
>gi|374330896|ref|YP_005081080.1| tRNA-dihydrouridine synthase [Pseudovibrio sp. FO-BEG1]
gi|359343684|gb|AEV37058.1| tRNA-dihydrouridine synthase [Pseudovibrio sp. FO-BEG1]
Length = 303
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 126/238 (52%), Gaps = 8/238 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LML+P V E ++ + ++PV+ KCRIGVDD + L
Sbjct: 55 NVGCPSDRVQS-GKFGACLMLEPDLVAECIAAMKDVVSIPVTTKCRIGVDDQEPEEALNA 113
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
KV + + T +H+RKA L G+SP ENR +PPL Y+ Y L + PD+ +NGG+
Sbjct: 114 LADKVIA-AGTDALWVHARKAWLKGLSPKENRDVPPLDYDLVYRLKQRLPDVFIGINGGV 172
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E +A L K VM+GRAAYQNP L VD +YG + +T + ++ Y+ Y +
Sbjct: 173 ATLEETSAHLEK-LDGVMMGRAAYQNP-MLLAEVDRVVYGEDGTAITPVEAMDAYRGYIE 230
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
L T G + + + +L + PG F+R LE+ + A+
Sbjct: 231 NEL-TAGTK---LASITRHILGTYQGVPGARHFRRIMTVEANKVGAGIEVLEDALAAV 284
>gi|254415230|ref|ZP_05028992.1| TIM-barrel protein, yjbN family [Coleofasciculus chthonoplastes PCC
7420]
gi|196178036|gb|EDX73038.1| TIM-barrel protein, yjbN family [Coleofasciculus chthonoplastes PCC
7420]
Length = 338
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 123/240 (51%), Gaps = 8/240 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P+ V + + +PV+VK RIG+D+ D Y + +
Sbjct: 105 NVGCPSDRVQ-NGNFGACLMAQPERVARGVEAMIKAVTIPVTVKHRIGIDECDRYEDMAN 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ S + +HF +H+RKA L G+SP ENRT+PPL+Y + L ++FP L +NGG
Sbjct: 164 FV-RIVSEAGCQHFSVHARKAWLQGLSPKENRTVPPLRYSDVHRLKQEFPQLFIEINGGF 222
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++V L K VM+GRAAY NP Y D I+ TR QV E Y D
Sbjct: 223 TSLEQVQEQL-KFVDAVMIGRAAYDNP-YLFAQADCQIFEEECIPPTRHQVAEGMLDYID 280
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
+ + + + +L F +PG+ +KR + E + +PD
Sbjct: 281 HWVA----KGLKLNKITRHILQLFSGQPGSRAWKRHLTEKSCIPGVGSEVVREALAKVPD 336
>gi|422648762|ref|ZP_16711880.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. maculicola
str. ES4326]
gi|330962294|gb|EGH62554.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 300
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 121/213 (56%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P+ V + + + +PV+VK RIG++ DSY +LCDF+
Sbjct: 70 GCPSDRVQNN-MIGACLMAHPELVADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFV 128
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + F +H+R A+L G+SP ENR IPPL+Y+ L DFP+L LNGGI T
Sbjct: 129 GKVQE-AGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKTDFPELEIVLNGGIKT 187
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ + L+ VM+GR AY NP Y L HVD ++G+ + ++R +E + Y A
Sbjct: 188 LEQCSEHLQT-FDGVMLGREAYHNP-YLLAHVDQQLFGSTAPVISRYDALESMRPYIAAH 245
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + GN R ++ L F PG F++
Sbjct: 246 IASGGNMHHVTRHMLGLGLGF----PGARRFRQ 274
>gi|347538423|ref|YP_004845847.1| tRNA-dihydrouridine synthase A [Pseudogulbenkiania sp. NH8B]
gi|345641600|dbj|BAK75433.1| tRNA-dihydrouridine synthase A [Pseudogulbenkiania sp. NH8B]
Length = 316
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 119/222 (53%), Gaps = 8/222 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V + + + + V+VK RIG+D + Y + D
Sbjct: 83 NVGCPSERVQ-KGAFGACLMAEPQLVADCVKSMRDAVGIDVTVKHRIGIDAVEDYGYVRD 141
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFPD+ LNGG+
Sbjct: 142 FVGHIVE-AGCATFIVHARNAILKGLSPKENREIPPLKYDYVYRLKRDFPDVEILLNGGV 200
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ DE+ L+ VMVGR AY NPW + D Y + +R VVE Y +
Sbjct: 201 KSNDEIAGHLQH-VDGVMVGREAYHNPW-LMADWDARFYDDAHTEASRDAVVEVMLPYIE 258
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK-ADAAF 223
L G +R V + +L + PG ++R +DAA
Sbjct: 259 QRLAEPGTQ---LRHVARHILGLYQGLPGARAWRRMLSDAAL 297
>gi|254456205|ref|ZP_05069634.1| tRNA-dihydrouridine synthase A [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083207|gb|EDZ60633.1| tRNA-dihydrouridine synthase A [Candidatus Pelagibacter sp.
HTCC7211]
Length = 334
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 137/247 (55%), Gaps = 20/247 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS KV + FG LM +P V E ++ + + N+PV+ K RIG D + ++ L +
Sbjct: 95 NLGCPSKKVQKN-MFGACLMKEPDLVAECINSMVNSCNIPVTAKTRIGFDQTEDFDYLNN 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI+K+ + T+ FI+H+RKA+L G+SP +N IP L Y Y + + P+L +NGGI
Sbjct: 154 FIHKMRD-AGTKTFILHARKAMLTGLSPKQNLNIPKLNYNMVYEIKKKNPELEIIINGGI 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ V E++ L K VM+GR+ YQNP Y+L ++ I+ ++ TR QVVEK Y D
Sbjct: 213 SKVSEIDNHL-KFCDGVMIGRSIYQNP-YSLIEIERDIFNTHNNP-TREQVVEKLLEYAD 269
Query: 183 --AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
LGT N+ +M+ + +H + G+ +KR ++ FQ K + + +
Sbjct: 270 KEVKLGTKINH------IMRHTVGLYHGQTGSKDWKRYLSDNLMARESDFQKTKHIMTIV 323
Query: 234 EETIVAI 240
+ AI
Sbjct: 324 QNNEKAI 330
>gi|313667754|ref|YP_004048038.1| dihydrouridine synthase [Neisseria lactamica 020-06]
gi|313005216|emb|CBN86649.1| Putative dihydrouridine synthase [Neisseria lactamica 020-06]
Length = 336
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 119/222 (53%), Gaps = 6/222 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSP+V G FG LM + V + ++ + ++PV+VK RIGVD Y + D
Sbjct: 97 NCGCPSPRVQ-KGSFGACLMNEVGLVADCLNAMQDAVHIPVTVKHRIGVDRQTEYQTVAD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + + R FI+H+R A L+G+SP ENR +PPLKY+Y Y L ++FP+L +NGGI
Sbjct: 156 FVGTLRDKTACRTFIVHARNAWLDGLSPKENRDVPPLKYDYVYRLKQEFPELEIIINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T +E A + VMVGR AY NP + D YG S + +V++ Y
Sbjct: 216 -TANEAIAGHLQHVDGVMVGREAYHNP-MVMHEWDRLFYGDTRSPIEYADLVQRLYTYSQ 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK-ADAAF 223
A + +R +++ L H G ++R +DAA
Sbjct: 274 AQI--QAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDAAL 313
>gi|427402986|ref|ZP_18893983.1| tRNA dihydrouridine synthase A [Massilia timonae CCUG 45783]
gi|425718169|gb|EKU81120.1| tRNA dihydrouridine synthase A [Massilia timonae CCUG 45783]
Length = 344
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 120/217 (55%), Gaps = 6/217 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++ V+VK RIG+D + Y + D
Sbjct: 105 NCGCPSERVQ-KGAFGACLMNEPQLVADCVKAMRDAVSIDVTVKHRIGIDYDEEYGFVRD 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + + FI+H+R A+L G+SP ENR IPPL+Y Y L R+FPDL +NGGI
Sbjct: 164 FVGTIAD-AGCKTFIVHARNAVLKGLSPKENREIPPLRYAVAYQLKREFPDLEILINGGI 222
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSG--LTRRQVVEKYQIY 180
+ DE+ L+ VM+GR AY NPW T+ D YG +G +R +V+E Y
Sbjct: 223 KSDDEIALHLQH-VDGVMLGREAYHNPW-TMADWDRRFYGDAGAGRPRSRVEVLEAMIPY 280
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ L YG + + + +L PG F++
Sbjct: 281 IEEQLRLYGPLGLKLNSITRHMLGLMQGLPGARSFRQ 317
>gi|255079776|ref|XP_002503468.1| predicted protein [Micromonas sp. RCC299]
gi|226518735|gb|ACO64726.1| predicted protein [Micromonas sp. RCC299]
Length = 499
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 108/192 (56%), Gaps = 14/192 (7%)
Query: 3 SCGCPSPKVAGHG----CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV------- 51
+CGCPS +V CFG +LM DP VGE + + +VPV+VK R+GV
Sbjct: 120 NCGCPSNRVVNKKDVATCFGAALMRDPTHVGECLRRMREAVDVPVTVKHRLGVRPTEKSP 179
Query: 52 -DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 110
D DSY + +F+ V+ S +HFI+H+R A+L+G+S NRT+PPL++ +AL D
Sbjct: 180 DDSMDSYAFVSEFVDVVNQASGVKHFIVHARAAVLSGLSTTGNRTVPPLRHAEVHALADD 239
Query: 111 FPDLTFTLNGGINTVDEVNAALRKGA-HHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLT 169
FP L FTLNGGI T+D+ L G VM+GRA Y+NP L VD YG
Sbjct: 240 FPSLGFTLNGGIETMDQAAEHLESGKLRGVMLGRAVYRNP-AVLAEVDARFYGDEPREAF 298
Query: 170 RRQVVEKYQIYG 181
R + + ++ G
Sbjct: 299 RERYAGEARVAG 310
>gi|254293797|ref|YP_003059820.1| yjbN family TIM-barrel protein [Hirschia baltica ATCC 49814]
gi|254042328|gb|ACT59123.1| TIM-barrel protein, yjbN family [Hirschia baltica ATCC 49814]
Length = 327
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 120/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM P+ V E +S + ++PV+VKCRIG+DD D +L
Sbjct: 93 NCGCPSDRVQS-GAFGACLMAQPERVAECISAMQNAVDIPVTVKCRIGIDDDDPNERLFS 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + + FI+H+RKA L G+SP ENR IPPL Y+ L + PDLT +LNGG+
Sbjct: 152 FVNTVAD-AGCQVFIVHARKAWLKGLSPKENRDIPPLDYDLVVRLKKARPDLTISLNGGL 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ E + VM+GRAAY P + LG VD ++G + ++ Q + Y+ Y
Sbjct: 211 VDM-EASLDQLSCLDGVMLGRAAYHTP-HILGQVDRLVFGETTPDVSEHQALATYRPYIK 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L H+ + + ++ F+ + G ++R
Sbjct: 269 AQL----EKGTHLHAITRHMMGLFNGKRGAKKWRR 299
>gi|117618436|ref|YP_858131.1| tRNA-dihydrouridine synthase A [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559843|gb|ABK36791.1| tRNA-dihydrouridine synthase A [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 328
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + + + ++PV+VK RIG+DD DSY L
Sbjct: 89 NVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMRDVVDIPVTVKTRIGIDDQDSYEFLQA 147
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V + FI+H+RKA L+G+SP ENR IPPL Y Y + +D+PDLT +NGG+
Sbjct: 148 FIEQVRD-AGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRVKQDYPDLTIAINGGV 206
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L+ VM+GR AYQNP Y L VD ++G ++ +R +VV Y +
Sbjct: 207 TSMEQTLEHLQH-LDGVMMGREAYQNP-YILAQVDNLVFGQNNAVPSRHEVVRMMLPYIE 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GN H + + +L F + G ++R
Sbjct: 265 QELAK-GNYLSH---MTRHMLGLFQNMQGARAWRR 295
>gi|312114498|ref|YP_004012094.1| yjbN family TIM-barrel protein [Rhodomicrobium vannielii ATCC
17100]
gi|311219627|gb|ADP70995.1| TIM-barrel protein, yjbN family [Rhodomicrobium vannielii ATCC
17100]
Length = 343
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 119/217 (54%), Gaps = 10/217 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI--AANTNVPVSVKCRIGVDDHDSYNQL 60
+CGCPS +V G FG LM +P+ V ++ I A +PV+VK RIG+D+ DS L
Sbjct: 101 NCGCPSDRVQS-GRFGACLMAEPELVASCVAAIKSAVGGQIPVTVKNRIGIDEQDSEADL 159
Query: 61 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 120
FI V++ S FI+H+RKA L G+SP ENR +PPL YE Y L FP+LT +NG
Sbjct: 160 TRFIETVAA-SGCEIFIVHARKAWLKGLSPRENRDVPPLDYERVYRLKAAFPELTIIING 218
Query: 121 GINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
GI T+ + L VM+GRAAY+NP L VD A+YG ++ L + +E+ Y
Sbjct: 219 GIETIAQSAKHLEM-VDGVMLGRAAYKNPALLL-EVDAALYGETAAPLRPHEALERMLPY 276
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ L + + + +L + PG F+R
Sbjct: 277 IEREL----ERGTRLSAIARHMLGLVNGRPGARPFRR 309
>gi|88800086|ref|ZP_01115656.1| hypothetical protein MED297_16794 [Reinekea blandensis MED297]
gi|88777212|gb|EAR08417.1| hypothetical protein MED297_16794 [Reinekea blandensis MED297]
Length = 338
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 100/160 (62%), Gaps = 3/160 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G G LM V +A+ + N+PV++K RIG+DD+DSY L D
Sbjct: 93 NAGCPSDRVQ-NGMIGAILMAHADKVTDALKAMQDRVNIPVTLKHRIGIDDYDSYEFLRD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +VS LS FI+H+RKA+L+G+SP ENR IPPL Y+ L +DFP+L +NGGI
Sbjct: 152 FVGQVS-LSGCDTFIVHARKAILSGLSPKENREIPPLDYDRVIRLKQDFPNLNIVINGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 162
+ E A + +G VM+GR AYQNP L VD YG
Sbjct: 211 KSHQEAQALINRGLDGVMLGREAYQNP-LILSEVDHIYYG 249
>gi|300691712|ref|YP_003752707.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum PSI07]
gi|299078772|emb|CBJ51432.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum PSI07]
Length = 302
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 129/239 (53%), Gaps = 17/239 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +PK V + + + ++PV+VK RIG+D ++Y+ + D
Sbjct: 55 NCGCPSERVQ-RGAFGACLMAEPKLVADCVKAMRDTVSIPVTVKHRIGIDAIETYDFVRD 113
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPL+YE Y L RDFP L LNGG+
Sbjct: 114 FVGTIAE-AGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQLKRDFPQLEILLNGGV 172
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
+++++A L AH VM+GR AY +P + + D YGA + TR +V + Y
Sbjct: 173 QALEQIDAHL---AHVDGVMIGREAYHHP-HLMASFDARYYGADTVAPTRAEVEDAMVDY 228
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-----KADAAFQTCKTVKSFLE 234
+G + + ++ +L + G ++R KA +T ++ E
Sbjct: 229 ----IGRWVERGGYAGAAVRHMLGLYRGVAGARGWRRVLSDAKALGRVKTLDDARALFE 283
>gi|224824837|ref|ZP_03697944.1| TIM-barrel protein, yjbN family [Pseudogulbenkiania ferrooxidans
2002]
gi|224603330|gb|EEG09506.1| TIM-barrel protein, yjbN family [Pseudogulbenkiania ferrooxidans
2002]
Length = 313
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 118/222 (53%), Gaps = 8/222 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P+ V + + + + V+VK RIG+D + Y + D
Sbjct: 80 NVGCPSERVQ-KGAFGACLMAEPQLVADCVKAMRDAVGIDVTVKHRIGIDAVEDYGYVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + + FI+H+R A+L G+SP ENR IPPLKY+Y Y L RDFPD+ LNGG+
Sbjct: 139 FVGHIVE-AGCATFIVHARNAILKGLSPKENREIPPLKYDYVYRLKRDFPDVEILLNGGV 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ DE+ L+ VMVGR AY NPW + D Y + TR VVE Y +
Sbjct: 198 KSNDEIARHLQH-VDGVMVGREAYHNPW-LMADWDARFYDDAHTEATRDAVVEAMLPYIE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK-ADAAF 223
L +R V + +L + PG ++R +DAA
Sbjct: 256 QRLAEPATQ---LRHVARHILGLYQGLPGARAWRRMLSDAAL 294
>gi|347822203|ref|ZP_08875637.1| tRNA-dihydrouridine synthase A [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 319
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 116/215 (53%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG SLM P+ V + + + +VPV+VK RIGVD + Y + D
Sbjct: 85 NCGCPSERVQ-RGAFGASLMKAPQRVADCIRAMQDQVDVPVTVKHRIGVDRQEDYGFVRD 143
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A L G+SP ENR +PPL+Y + L DFP +T +NGG+
Sbjct: 144 FVGTLTD-AGCNVFIVHARNAWLQGLSPKENRDVPPLRYAVVHRLRADFPGITLAINGGM 202
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++ V LR VMVGRAAY NPW+ L D +G LTR V Y +
Sbjct: 203 DSDALVQEQLR-ALDGVMVGRAAYHNPWW-LARWDALYHGGEPCPLTRDGVELAMLQYME 260
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+G PH + + +L H PG L+++
Sbjct: 261 REAARHGTPWPH---IARHMLGLRHGLPGARLWRQ 292
>gi|94499718|ref|ZP_01306255.1| Dihydrouridine synthase TIM-barrel protein yjbN [Bermanella
marisrubri]
gi|94428472|gb|EAT13445.1| Dihydrouridine synthase TIM-barrel protein yjbN [Oceanobacter sp.
RED65]
Length = 330
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 131/251 (52%), Gaps = 30/251 (11%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P+ V + + + +PV+VK RIG+DD DSY L
Sbjct: 99 NVGCPSDRVQNN-MIGACLMGHPQLVADCIKAMQDAVEIPVTVKHRIGIDDQDSYEHLHH 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + FIIH RKA+L+G+SP ENR IPPL+YE + +D P L LNGGI
Sbjct: 158 FVDTVAA-TGCETFIIHGRKAILDGLSPKENREIPPLRYEVVQQIKQDLPQLEVILNGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T E L K A VM+GR AY NP L VD YG ++ D
Sbjct: 217 KTHKEATEHL-KWADGVMLGREAYHNP-SVLMDVDALYYGHEPQTKDKK----------D 264
Query: 183 AILGTYGNNRPHVRD----------VMKPLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKS 231
I Y PH+ D V + +L F+ +PG+ LF+R ++ AF+ ++++
Sbjct: 265 CIRALY----PHIEDHLSKGFKLSYVTRHILGLFNGQPGSRLFRRHLSEQAFKKDASIQT 320
Query: 232 FLEETIVAIPD 242
+E+ + +PD
Sbjct: 321 -IEDALAYMPD 330
>gi|424884841|ref|ZP_18308452.1| tRNA dihydrouridine synthase A [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393176603|gb|EJC76644.1| tRNA dihydrouridine synthase A [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 333
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LML PK V E ++ + A T+VPV+VKCRIGVD+ + L +
Sbjct: 92 NVGCPSDRVQS-GTFGACLMLTPKTVAECVAAMKAVTSVPVTVKCRIGVDEQEPEQALPE 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
I V + IH+RKA L G+SP ENR IPPL YE Y + + +PD+ +NGGI
Sbjct: 151 LITDVLD-AGADAIWIHARKAWLKGLSPKENREIPPLDYEIVYRMKQRWPDVFVGINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE L++ VM+GRAAYQN L VD +GAP++ + ++ Y +
Sbjct: 210 RTLDEAAVHLKQ-VDGVMLGRAAYQNA-AILSEVDQRFFGAPAAEPDWEALRDRMMAYAE 267
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ G ++ V + ++ F PG +++
Sbjct: 268 RHIAAGGR----LQHVARHMVGLFTGLPGARRYRQ 298
>gi|411012138|ref|ZP_11388467.1| tRNA-dihydrouridine synthase A [Aeromonas aquariorum AAK1]
Length = 318
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + + + ++PV+VK RIG+DD DSY L
Sbjct: 79 NVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMRDLVDIPVTVKTRIGIDDQDSYEFLQA 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V + FI+H+RKA L+G+SP ENR IPPL Y Y + +D+PDLT +NGG+
Sbjct: 138 FIEQVRD-AGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRVKQDYPDLTIAINGGV 196
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L+ VM+GR AYQNP Y L VD ++G ++ +R +VV Y +
Sbjct: 197 TSLEQTLEHLQH-LDGVMMGREAYQNP-YILAQVDNLVFGQNNAVPSRHEVVRMMLPYIE 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GN H + + +L F + G ++R
Sbjct: 255 QELAK-GNYLSH---MTRHMLGLFQNMQGARAWRR 285
>gi|383317630|ref|YP_005378472.1| tRNA dihydrouridine synthase A [Frateuria aurantia DSM 6220]
gi|379044734|gb|AFC86790.1| tRNA dihydrouridine synthase A [Frateuria aurantia DSM 6220]
Length = 346
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 119/215 (55%), Gaps = 10/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P+ V + +S + ++PV+VKCRIGVDD D L
Sbjct: 107 NVGCPSDRVQS-GEFGACLMRTPQRVADCVSAMQEVVSIPVTVKCRIGVDDQDPEIALQT 165
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F + I+H+RKA L G+SP ENR IPPL Y + L RDFPD+ +NGG+
Sbjct: 166 FTEAMQRAG-VHKLIVHARKAWLQGLSPKENRDIPPLDYPRVHRLKRDFPDMEIIINGGL 224
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
TV+ AL VM+GRAAYQ+P Y L ++ ++G PS +R ++++ Y +
Sbjct: 225 TTVEASVEALDH-VDGVMIGRAAYQDP-YLLTQLEARLFGTPSP--SREAILQQMLGYCE 280
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
++ G+ ++ V + +L + PG ++R
Sbjct: 281 KVIAGGGS----LKHVTRHMLGLYQGRPGARGYRR 311
>gi|83943001|ref|ZP_00955461.1| tRNA-dihydrouridine synthase A [Sulfitobacter sp. EE-36]
gi|83846009|gb|EAP83886.1| tRNA-dihydrouridine synthase A [Sulfitobacter sp. EE-36]
Length = 337
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 116/215 (53%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V GCFG LM P V ++++ + +V V+VKCRIGVDD + L +
Sbjct: 97 NVGCPSDRVQS-GCFGAVLMEQPALVAKSVAAMRRAVDVDVTVKCRIGVDDQNPAEVLPE 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ R IH+RKA L G+SP ENR IPPL YE + + FP+L ++NGGI
Sbjct: 156 FLAQIVGAGCER-VTIHARKAWLQGLSPKENRDIPPLDYELVHRMKGLFPNLHISINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++D+ A L G VM+GR+AY NP L D IYG + T VV + Y D
Sbjct: 215 TSLDQAEAFLDAGLDGVMIGRSAYHNPTDILAQADRRIYGT-GADTTPEDVVAQMLPYID 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A + G + + + ++ F G +++R
Sbjct: 274 AHIDGGGK----LNQITRHMMGLFAGRTGARVWRR 304
>gi|440746561|ref|ZP_20925841.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae BRIP39023]
gi|440370821|gb|ELQ07686.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae BRIP39023]
Length = 312
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 119/213 (55%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P V + + + +PV+VK RIG++ DSY +LCDF+
Sbjct: 82 GCPSDRVQNN-MIGACLMAHPALVADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFV 140
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + F +H+R A+L G+SP ENR IPPL+Y+ L DFPDL LNGGI T
Sbjct: 141 GKVQE-AGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKT 199
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ + L + VM+GR AY NP Y L HVD ++G+ + ++R +E + Y
Sbjct: 200 LEQCSEHL-QSFDGVMLGREAYHNP-YLLAHVDQQLFGSTAPVISRYDALESMRPYIAEH 257
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + GN R ++ L F PG F++
Sbjct: 258 IASGGNMHHVTRHMLGLGLGF----PGARRFRQ 286
>gi|83954176|ref|ZP_00962896.1| tRNA-dihydrouridine synthase A [Sulfitobacter sp. NAS-14.1]
gi|83841213|gb|EAP80383.1| tRNA-dihydrouridine synthase A [Sulfitobacter sp. NAS-14.1]
Length = 337
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 116/215 (53%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V GCFG LM P V ++++ + +V V+VKCRIGVDD + L +
Sbjct: 97 NVGCPSDRVQS-GCFGAVLMEQPALVAKSVAAMRRAVDVDVTVKCRIGVDDQNPAEVLPE 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ R IH+RKA L G+SP ENR IPPL YE + + FP+L ++NGGI
Sbjct: 156 FLAQIVGAGCER-VTIHARKAWLQGLSPKENRDIPPLDYELVHRMKGLFPNLHISINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++D+ A L G VM+GR+AY NP L D IYG + T VV + Y D
Sbjct: 215 TSLDQAEAFLDAGLDGVMIGRSAYHNPTDILAQADRRIYGT-GADTTPEDVVAQMLPYID 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A + G + + + ++ F G +++R
Sbjct: 274 AHIDGGGK----LNQITRHMMGLFAGRTGARVWRR 304
>gi|406678525|ref|ZP_11085700.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC35]
gi|404621638|gb|EKB18504.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC35]
Length = 328
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + + + ++PV+VK RIG+DD DSY L
Sbjct: 89 NVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMRDVVDIPVTVKTRIGIDDQDSYEFLQT 147
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V + FI+H+RKA L+G+SP ENR IPPL Y Y + +D+P+LT LNGG+
Sbjct: 148 FIEQVRD-AGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRVKQDYPELTIALNGGV 206
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L+ VM+GR AYQNP Y L VD ++G ++ +R +VV Y +
Sbjct: 207 TSMEQTLEHLQH-VDGVMMGREAYQNP-YILAQVDNLVFGQINAVPSRHEVVRMMLPYIE 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GN H + + +L F + G ++R
Sbjct: 265 QELAK-GNYLSH---MTRHMLGLFQNMQGARAWRR 295
>gi|120554835|ref|YP_959186.1| tRNA-dihydrouridine synthase A [Marinobacter aquaeolei VT8]
gi|120324684|gb|ABM18999.1| tRNA-U16,U17-dihydrouridine synthase [Marinobacter aquaeolei VT8]
Length = 337
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 122/217 (56%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P V E +S + T++PV+VK RIG++ +S+ +LC+
Sbjct: 99 NVGCPSDRVQNN-MIGACLMGHPDKVAEGVSAMIEATDLPVTVKHRIGINGRESWEELCE 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V++ + + FI+H+R A+L G+SP ENR IPPLKY++ Y L + +P L +NGGI
Sbjct: 158 FIETVAA-AGCKTFIVHARIAVLEGLSPKENRDIPPLKYDWVYRLKQAYPHLEIIINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKY--QIY 180
T E + L VM+GR AY NPW L VD A++G P + +R + + I
Sbjct: 217 KTFGECHEHLTH-TDGVMLGREAYHNPWL-LAEVDAALFGEPPAVTSRHEALRAMFPFIQ 274
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ G Y + + + ++ F +PG F+R
Sbjct: 275 QELDRGVY------LTHITRHIMGLFLGQPGGRQFRR 305
>gi|423205254|ref|ZP_17191810.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC34]
gi|404624337|gb|EKB21172.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC34]
Length = 328
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + + + ++PV+VK RIG+DD DSY L
Sbjct: 89 NVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMRDVVDIPVTVKTRIGIDDQDSYEFLQA 147
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V + FI+H+RKA L+G+SP ENR IPPL Y Y + +D+P+LT LNGG+
Sbjct: 148 FIEQVRD-AGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRVKQDYPELTIALNGGV 206
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L+ VM+GR AYQNP Y L VD ++G ++ +R +VV Y +
Sbjct: 207 TSMEQTLEHLQH-VDGVMMGREAYQNP-YILAQVDNLVFGQNNAVPSRHEVVRMMLPYIE 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GN H + + +L F + G ++R
Sbjct: 265 QELAK-GNYLSH---MTRHMLGLFQNMQGARAWRR 295
>gi|383457478|ref|YP_005371467.1| tRNA-dihydrouridine synthase A [Corallococcus coralloides DSM 2259]
gi|380732639|gb|AFE08641.1| tRNA-dihydrouridine synthase A [Corallococcus coralloides DSM 2259]
Length = 337
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM +P V ++ + +PV+VK RI +DD + + L D
Sbjct: 98 NVGCPSDRVQS-GRFGACLMAEPDLVARGVAAMREAVRIPVTVKSRIAIDDMEEWPTLED 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +VS+ TR FI+H+RKA L G+SP ENR +PPL+Y+ + L ++P L +LNGGI
Sbjct: 157 FVRRVSAAGCTR-FIVHARKAWLQGLSPKENRDVPPLRYDLVHRLKAEYPHLDISLNGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D L + VM+GRA Y++P Y L D +G + LTR +VV+ Y
Sbjct: 216 KTLDAAAEHLGR-VDGVMMGRAPYESP-YLLADADRRFFGGTQAPLTRHEVVDAMLPY-- 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ T + + + + +L F PG ++R
Sbjct: 272 --IETQMSQGAPLGAITRHMLGLFQGLPGARAWRR 304
>gi|330828271|ref|YP_004391223.1| tRNA-dihydrouridine synthase A [Aeromonas veronii B565]
gi|328803407|gb|AEB48606.1| tRNA-dihydrouridine synthase A [Aeromonas veronii B565]
Length = 328
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + + + ++PV+VK RIG+DD DSY L
Sbjct: 89 NVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMRDVVDIPVTVKTRIGIDDQDSYEFLQA 147
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V + FI+H+RKA L+G+SP ENR IPPL Y Y + +D+P+LT LNGG+
Sbjct: 148 FIEQVRD-AGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRVKQDYPELTIALNGGV 206
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L+ VM+GR AYQNP Y L VD ++G ++ +R +VV Y +
Sbjct: 207 TSMEQTLEHLQH-VDGVMMGREAYQNP-YILAQVDNLVFGQNNAVPSRHEVVRMMLPYIE 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GN H + + +L F + G ++R
Sbjct: 265 QELAK-GNYLSH---MTRHMLGLFQNMQGARAWRR 295
>gi|325267704|ref|ZP_08134355.1| tRNA dihydrouridine synthase A [Kingella denitrificans ATCC 33394]
gi|324980828|gb|EGC16489.1| tRNA dihydrouridine synthase A [Kingella denitrificans ATCC 33394]
Length = 383
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-ANTNVPVSVKCRIGVDDHDSYNQLC 61
+CGCPSP+V G FG LMLD V + ++ + A + V+VK RIG+D Y L
Sbjct: 142 NCGCPSPRVQK-GAFGACLMLDAPLVADCLNAMQDAAPDTAVTVKHRIGIDRQTEYAPLA 200
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
DF+ + +P R F++H+R A L+G+SP ENR +PPL+YE Y L ++FPDL +NGG
Sbjct: 201 DFVGHLVRHTPCRTFVVHARNAWLDGLSPKENREVPPLRYELVYRLKQEFPDLEIIINGG 260
Query: 122 INTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYG 181
I T +++ L+ VMVGR AY NP + + D Y R ++V++ Y
Sbjct: 261 IRTNEDIALHLQH-VDGVMVGREAYHNP-FVMHDWDRLFYREKQPAPERDEIVQRLYEYA 318
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L N +R + + L H P +++R
Sbjct: 319 QQQLSK--NQGTILRHMARHYLGLLHGLPKARVWRR 352
>gi|387130634|ref|YP_006293524.1| tRNA dihydrouridine synthase A [Methylophaga sp. JAM7]
gi|386271923|gb|AFJ02837.1| tRNA dihydrouridine synthase A [Methylophaga sp. JAM7]
Length = 325
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P+ V + ++ + A +PV+VK R+G+DD DSY L
Sbjct: 95 NIGCPSDRVQ-NGQFGACLMASPELVADGIAAMKAAVRIPVTVKTRLGIDDQDSYAFLWQ 153
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + I+H+RKA L G+SP +NR IP L Y+ Y + DFP+L +NGGI
Sbjct: 154 FVNAVNQ-AGADALILHARKAWLQGLSPKQNREIPSLDYDRVYQIKADFPELHLDINGGI 212
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ L K VM+GRA Y P + L VD ++G + ++ +VVE Y
Sbjct: 213 QTLEQAACHLEK-VDGVMIGRAVYNQP-HLLAWVDQKLFGDDTPVISETEVVESMIPY-- 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
I RP ++ + + +L F +PG ++R
Sbjct: 269 -IERRLDEGRP-LKSITRHMLGLFQGQPGARRWRR 301
>gi|423198255|ref|ZP_17184838.1| tRNA-dihydrouridine synthase A [Aeromonas hydrophila SSU]
gi|404630479|gb|EKB27156.1| tRNA-dihydrouridine synthase A [Aeromonas hydrophila SSU]
Length = 328
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 122/215 (56%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + + + ++PV+VK RIG+DD DSY L
Sbjct: 89 NVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMRDLVDIPVTVKTRIGIDDQDSYEFLQA 147
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V + FI+H+RKA L+G+SP ENR IPPL Y Y + +D+PDLT +NGG+
Sbjct: 148 FIEQVRD-AGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRVKQDYPDLTIAINGGV 206
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L+ VM+GR AYQNP Y L VD ++G + +R +VV Y +
Sbjct: 207 TSLEQTLEHLQH-LDGVMMGREAYQNP-YILAQVDNLVFGQNKAVPSRHEVVRMMLPYIE 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GN H + + +L F + G ++R
Sbjct: 265 QELAK-GNYLSH---MTRHMLGLFQNMQGARAWRR 295
>gi|422642133|ref|ZP_16705553.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae Cit 7]
gi|330954517|gb|EGH54777.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae Cit 7]
Length = 312
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 119/213 (55%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P V + + + +PV+VK RIG++ DSY +LCDF+
Sbjct: 82 GCPSDRVQNN-MIGACLMAHPALVADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFV 140
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + F +H+R A+L G+SP ENR IPPL+Y+ L DFPDL LNGGI T
Sbjct: 141 GKVQE-AGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKT 199
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ + L + VM+GR AY NP Y L HVD ++G+ + ++R +E + Y
Sbjct: 200 LEQCSEHL-QSFDGVMLGREAYHNP-YLLAHVDQQLFGSTAPVISRYDALESMRPYIAEH 257
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + GN R ++ L F PG F++
Sbjct: 258 IASGGNMHHVTRHMLGLGLGF----PGARRFRQ 286
>gi|414172727|ref|ZP_11427638.1| tRNA dihydrouridine synthase A [Afipia broomeae ATCC 49717]
gi|410894402|gb|EKS42192.1| tRNA dihydrouridine synthase A [Afipia broomeae ATCC 49717]
Length = 319
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 117/218 (53%), Gaps = 14/218 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G G FG LM +P+ V E ++ + +PV+VKCRIG+DD D L D
Sbjct: 80 NVGCPSDRVKG-GNFGACLMAEPQLVAECVAAMKQAVRIPVTVKCRIGIDDQDPEVAL-D 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+ + + + ++H+RKA LNG+SP ENR IPPL Y+ Y L PD+ +NGGI
Sbjct: 138 TLSRAVIAAGSDALVVHARKAWLNGLSPKENRDIPPLHYDRVYRLKAALPDVPVVINGGI 197
Query: 123 NTVDEVNAALRKGAHHV---MVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQI 179
++ AA ++ HV M+GRAAYQ PW L VD ++G + T +E
Sbjct: 198 TSI----AAAKQHLDHVDGAMLGRAAYQEPWRLLS-VDPELFGEAAPHATMHDAIEALMP 252
Query: 180 YGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
Y + L R H + + L+ FH PG F+R
Sbjct: 253 YVERELA--AGTRLH--SITRHLVGAFHGVPGARAFRR 286
>gi|329896416|ref|ZP_08271515.1| tRNA-dihydrouridine synthase A [gamma proteobacterium IMCC3088]
gi|328921836|gb|EGG29207.1| tRNA-dihydrouridine synthase A [gamma proteobacterium IMCC3088]
Length = 319
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 122/215 (56%), Gaps = 9/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +PK V + + T++PV+VK R+G+D DSY +L +
Sbjct: 80 NCGCPSDRVQS-GGFGAYLMGEPKTVSACVQAMRNATDLPVTVKHRLGIDHQDSYEELLE 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + RHF++H+RKA L G+SP +NR IPPL YE+ Y L + P+LT +NGGI
Sbjct: 139 FVQTVAE-AGCRHFVVHARKAWLKGLSPKQNRDIPPLNYEWVYRLKQTLPELTIVINGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
E L+ VM+GR AY +PW+ L + A++G + L++ +++ + Y
Sbjct: 198 TQPQECVEHLQH-VDGVMIGREAYYHPWH-LRAISEAVFGKQNL-LSQPEIMTEMVRYSK 254
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + V + L++F+ G F+R
Sbjct: 255 EQL----EKGVKLNHVTRHLINFYQGCRGAKQFRR 285
>gi|225075955|ref|ZP_03719154.1| hypothetical protein NEIFLAOT_00980 [Neisseria flavescens
NRL30031/H210]
gi|224952670|gb|EEG33879.1| hypothetical protein NEIFLAOT_00980 [Neisseria flavescens
NRL30031/H210]
Length = 319
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSP+V G FG LM D V + ++ + +PV+VK RIGVD Y + D
Sbjct: 80 NCGCPSPRVQ-KGAFGACLMNDVDLVADCLNAMQDAVEIPVTVKHRIGVDRQTEYQVVAD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + + R +I+H+R A L+G+SP ENR +PPLKYEY Y L ++FPDL +NGGI
Sbjct: 139 FVGMLREKTACRTYIVHARNAWLDGLSPKENREVPPLKYEYVYRLKQEFPDLEILINGGI 198
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNP 149
T +E+ L K VM+GR AY NP
Sbjct: 199 TTNEEIAEHL-KFVDGVMIGREAYHNP 224
>gi|359787117|ref|ZP_09290183.1| tRNA-dihydrouridine synthase A [Halomonas sp. GFAJ-1]
gi|359295499|gb|EHK59764.1| tRNA-dihydrouridine synthase A [Halomonas sp. GFAJ-1]
Length = 343
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 113/215 (52%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P+ V EA+ + A ++PV+VKCRIG+DD D L
Sbjct: 98 NVGCPSDRVQNN-MIGACLMGHPEKVAEAIRAMQAAVSIPVTVKCRIGIDDQDEDADLAR 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ + F +H+RKA L G+SP +NR +PPL Y + L + P+L +NGGI
Sbjct: 157 FINIVAD-AGCEVFTVHARKAWLQGLSPKQNRDVPPLNYPRVHRLKQHHPELHIGINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE A L VMVGR AYQNPW G VD ++G P TR + ++ Y
Sbjct: 216 KTLDECQAQLMH-VDSVMVGREAYQNPWLLAG-VDAQLFGEPGPAKTRLEAAMAFRPYIQ 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + + + + LL F G F+R
Sbjct: 274 QRL----DEGAKLNHITRHLLGLFQGCSGGRRFRR 304
>gi|392954830|ref|ZP_10320381.1| tRNA-dihydrouridine synthase A [Hydrocarboniphaga effusa AP103]
gi|391857487|gb|EIT68018.1| tRNA-dihydrouridine synthase A [Hydrocarboniphaga effusa AP103]
Length = 345
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 121/217 (55%), Gaps = 12/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM + V + + + + T++PV+VK R+G+DD + Y +
Sbjct: 107 NCGCPSDRVQ-EGRFGACLMREADRVADCVRAMRSATDLPVTVKHRVGIDDSEDYAFMRG 165
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ T FI+H+RKA L G+SP ENR IPPL YE+ Y L ++FP LT +NGGI
Sbjct: 166 FVETVAAAGCTT-FIVHARKAWLQGLSPRENREIPPLTYEHVYRLKQEFPQLTVLINGGI 224
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D+ LR VM+GR AY+NP Y L +D ++ TR +++ Y Y
Sbjct: 225 RTLDQCRQHLRY-VDGVMLGREAYENP-YALAGLDRELFETDGDIPTREEIMNAYLPYVQ 282
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GT N + + +L + + G F+R
Sbjct: 283 RELDRGTALNR------ITRHILGLYRGQNGGRAFRR 313
>gi|238754677|ref|ZP_04616030.1| tRNA-dihydrouridine synthase A [Yersinia ruckeri ATCC 29473]
gi|238707136|gb|EEP99500.1| tRNA-dihydrouridine synthase A [Yersinia ruckeri ATCC 29473]
Length = 343
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 97/159 (61%), Gaps = 3/159 (1%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+DD DSY LC+
Sbjct: 105 NVGCPSDRVQ-NGRFGACLMGEADLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCE 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ KV+ F IH+RKA L+G+SP ENR +PPL Y Y L RDFP LT +NGG+
Sbjct: 164 FVQKVAEQGGCDMFTIHARKAWLSGLSPKENREVPPLDYPRVYQLKRDFPALTMAINGGV 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 161
T++E L K VM+GR AYQNP L VD ++
Sbjct: 224 KTLEEAKEHL-KYLDGVMMGREAYQNP-SILTQVDRELF 260
>gi|388565745|ref|ZP_10152228.1| tRNA-dihydrouridine synthase A [Hydrogenophaga sp. PBC]
gi|388267108|gb|EIK92615.1| tRNA-dihydrouridine synthase A [Hydrogenophaga sp. PBC]
Length = 335
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 106/178 (59%), Gaps = 4/178 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + ++PV+VK RIG+D +SY + D
Sbjct: 96 NCGCPSERVQ-RGAFGACLMAEPQTVADGVKAMRDAVSLPVTVKHRIGIDKTESYEFVRD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + FI+H+R A L G+SP ENR +PPL+YE + L RDFP LT +NGG
Sbjct: 155 FVGTVAD-AGCEVFIVHARNAWLQGLSPKENREVPPLRYELAHRLKRDFPRLTIAVNGGF 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T +++ L+ VM+GR AY +PW L D A +GAP S L R V ++ Y
Sbjct: 214 TTNEQIAEHLQH-VDGVMLGREAYHHPWL-LTTWDEAFFGAPPSALDRDAVEDEMVRY 269
>gi|207743351|ref|YP_002259743.1| trna-dihydrouridine synthase protein [Ralstonia solanacearum
IPO1609]
gi|206594748|emb|CAQ61675.1| trna-dihydrouridine synthase protein [Ralstonia solanacearum
IPO1609]
Length = 327
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 15/190 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +PK V + + + ++PV+VK RIG+D ++Y+ + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMAEPKLVADCVRAMRDAVSIPVTVKHRIGIDAIETYDFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPL+YE Y L RDFP L LNGG+
Sbjct: 139 FVGTIAE-AGCETFIVHARNAILKGLSPKENREIPPLRYEVAYQLKRDFPRLEILLNGGV 197
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+++++ L AH VM+GR AY +P + + + D YGA + TR +V
Sbjct: 198 QTLEQIDTHL---AHVDGVMIGREAYHHP-HLMANFDARYYGADTVAPTRAEVE------ 247
Query: 181 GDAILGTYGN 190
DA++G G
Sbjct: 248 -DAMIGYIGR 256
>gi|254241250|ref|ZP_04934572.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|126194628|gb|EAZ58691.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length = 332
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 110/187 (58%), Gaps = 11/187 (5%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V H G LM +P V + + + + V+VK RIG++ DSY +LCDF+
Sbjct: 102 GCPSDRVQ-HNMIGACLMGNPALVADCVKAMLDAVEIAVTVKHRIGINGRDSYAELCDFV 160
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+V + R F++H+R A+L G+SP ENR +PPL+YE L +DFPDL LNGGI T
Sbjct: 161 GQVRE-AGCRSFMVHARIAILEGLSPKENREVPPLRYEVAAQLKKDFPDLEIVLNGGIKT 219
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTR-------RQVVEKY 177
++ L + VM+GR AY NP Y L VD+ ++G+ + L+R R +E++
Sbjct: 220 LEACREHL-QTFDGVMLGREAYHNP-YLLAAVDSQLFGSEAPPLSRSEALLRLRPYIERH 277
Query: 178 QIYGDAI 184
Q G A+
Sbjct: 278 QAEGGAM 284
>gi|237746180|ref|ZP_04576660.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes HOxBLS]
gi|229377531|gb|EEO27622.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes HOxBLS]
Length = 328
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 124/239 (51%), Gaps = 5/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM + K V + + + ++ V+VK RIG+DD +Y+ + D
Sbjct: 92 NCGCPSERVQ-KGAFGACLMKESKLVADCVRAMKDAVSIDVTVKHRIGIDDMHTYDFVRD 150
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +++ + + FI+H+R A+L G+SP ENR IPPL+Y+ Y L +DFP L LNGG+
Sbjct: 151 FIGEIAG-AGCQTFIVHARNAILKGLSPKENREIPPLRYDVVYQLKKDFPGLEILLNGGV 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T +V L K VM+GRAAY PW + D YG + VV Y +
Sbjct: 210 ETAGQVEEHL-KHVDGVMIGRAAYHYPW-RMAEFDARFYGDGTVPENPSAVVAAMIPYIE 267
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-KADAAFQTCKTVKSFLEETIVAI 240
L YG + + + +L PG F++ +D A + L E + A+
Sbjct: 268 KQLALYGEKGLRMHGITRHMLGLVTGMPGARRFRQILSDPARLASGNPAAILMEALAAV 326
>gi|238760286|ref|ZP_04621429.1| tRNA-dihydrouridine synthase A [Yersinia aldovae ATCC 35236]
gi|238701488|gb|EEP94062.1| tRNA-dihydrouridine synthase A [Yersinia aldovae ATCC 35236]
Length = 349
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 116/213 (54%), Gaps = 7/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM + + V + + + ++PV+VK RIG+D DSY LC+F+
Sbjct: 113 GCPSDRVQ-NGRFGACLMGEAELVADCIKAMRDVVSIPVTVKTRIGIDQLDSYEFLCEFV 171
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
V+ F IH+RKA L+G+SP ENR +PPL YE Y L RDFP LT +NGG+ T
Sbjct: 172 QTVAERGECNIFTIHARKAWLSGLSPKENREVPPLNYERVYQLKRDFPALTIAINGGVKT 231
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+ E L K VM+GR AYQNP L VD ++ + + + +E Y +
Sbjct: 232 LAEAKEHL-KHLDGVMMGREAYQNPC-ILAQVDRELFDPNAPVMDSVKAIEALYPYIEQE 289
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + ++ + + +L F PG ++R
Sbjct: 290 L----SRGAYLGHITRHILGIFQGVPGARQWRR 318
>gi|333914801|ref|YP_004488533.1| yjbN family TIM-barrel protein [Delftia sp. Cs1-4]
gi|333745001|gb|AEF90178.1| TIM-barrel protein, yjbN family [Delftia sp. Cs1-4]
Length = 325
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 107/189 (56%), Gaps = 4/189 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM + V + + + ++PV+VK RIG+D +SY + D
Sbjct: 88 NCGCPSERVQ-RGAFGACLMNEAPLVADCVKAMVDVVDMPVTVKHRIGIDKDESYEFVRD 146
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + R FI+H+R A L G+SP ENR IPPL+YE L +DFP+LT +NGGI
Sbjct: 147 FVGTVAD-AGCRVFIVHARNAWLKGLSPKENREIPPLRYEIVARLKQDFPELTIAINGGI 205
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
V L++ VMVGR AY NPW+ L D YG S TR + E+ Y +
Sbjct: 206 KADATVQELLQQ-VDGVMVGREAYHNPWW-LASWDALYYGDASVEHTRESIEEQMVAYME 263
Query: 183 AILGTYGNN 191
T+G +
Sbjct: 264 REARTHGTH 272
>gi|421897245|ref|ZP_16327613.1| trna-dihydrouridine synthase protein [Ralstonia solanacearum MolK2]
gi|206588451|emb|CAQ35414.1| trna-dihydrouridine synthase protein [Ralstonia solanacearum MolK2]
Length = 327
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 15/190 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +PK V + + + ++PV+VK RIG+D ++Y+ + D
Sbjct: 80 NCGCPSERVQ-RGAFGACLMAEPKLVADCVRAMRDAVSIPVTVKHRIGIDAIETYDFVRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPL+YE Y L RDFP L LNGG+
Sbjct: 139 FVGTIAE-AGCETFIVHARNAILKGLSPKENREIPPLRYEVAYQLKRDFPRLEILLNGGV 197
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+++++ L AH VM+GR AY +P + + + D YGA + TR +V
Sbjct: 198 QTLEQIDTHL---AHVDGVMIGREAYHHP-HLMANFDARYYGADTVAPTRAEVE------ 247
Query: 181 GDAILGTYGN 190
DA++G G
Sbjct: 248 -DAMIGYIGR 256
>gi|89900729|ref|YP_523200.1| tRNA-dihydrouridine synthase A [Rhodoferax ferrireducens T118]
gi|89345466|gb|ABD69669.1| TIM-barrel protein, yjbN family [Rhodoferax ferrireducens T118]
Length = 331
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + +VPV+VK RIG+D +SY + D
Sbjct: 98 NCGCPSERVQ-RGAFGACLMAEPQLVADCVKAMVDVVSVPVTVKHRIGIDKTESYEFVRD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS + R FI+H+R A L G+SP ENR +PPL+YE Y L RDFP L +NGGI
Sbjct: 157 FVGSVSE-AGCRTFIVHARNAWLKGLSPKENRDVPPLRYELAYQLKRDFPSLVIVINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+ ++ L VM+GR AY NPW+ L D +GA ++ TR QV ++ Y
Sbjct: 216 TSSAQIAGHLLH-LDGVMLGREAYHNPWW-LASWDATFFGADATETTREQVEQQMCDYMT 273
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+G P + + +L H PG +++
Sbjct: 274 REAAEHGTPWP---TMARHMLGLRHGLPGARHWRQ 305
>gi|83749666|ref|ZP_00946647.1| NIFR3-like protein [Ralstonia solanacearum UW551]
gi|83723668|gb|EAP70865.1| NIFR3-like protein [Ralstonia solanacearum UW551]
Length = 344
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 15/190 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +PK V + + + ++PV+VK RIG+D ++Y+ + D
Sbjct: 97 NCGCPSERVQ-RGAFGACLMAEPKLVADCVRAMRDAVSIPVTVKHRIGIDAIETYDFVRD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPL+YE Y L RDFP L LNGG+
Sbjct: 156 FVGTIAE-AGCETFIVHARNAILKGLSPKENREIPPLRYEVAYQLKRDFPRLEILLNGGV 214
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+++++ L AH VM+GR AY +P + + + D YGA + TR +V
Sbjct: 215 QTLEQIDTHL---AHVDGVMIGREAYHHP-HLMANFDARYYGADTVAPTRAEVE------ 264
Query: 181 GDAILGTYGN 190
DA++G G
Sbjct: 265 -DAMIGYIGR 273
>gi|359779400|ref|ZP_09282627.1| tRNA-dihydrouridine synthase A [Pseudomonas psychrotolerans L19]
gi|359372016|gb|EHK72580.1| tRNA-dihydrouridine synthase A [Pseudomonas psychrotolerans L19]
Length = 312
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 121/215 (56%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P+ V +++ + +PV+VK RIG+ DSY+ L D
Sbjct: 80 NVGCPSDRVQNN-MIGACLMAYPERVADSVKAMRDAVAIPVTVKHRIGISGRDSYDALRD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V+ + R F +H+R A+L G+SP +NR IPPL+Y+ L++DFPDL F LNGGI
Sbjct: 139 FVGQVAE-AGCRSFTVHARIAILEGLSPKQNREIPPLRYDVAAQLVQDFPDLEFILNGGI 197
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+D L + VM+GR AYQNP Y L VD A+YG TR V+ + + Y +
Sbjct: 198 KTLDTCREQL-EVFDGVMLGREAYQNP-YLLAEVDAALYGCDRPQQTRHDVMLQLRPYVE 255
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L G + V + +L PG F++
Sbjct: 256 AHLQQGGL----IHHVTRHILGLAQGFPGARRFRQ 286
>gi|409394966|ref|ZP_11246092.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Chol1]
gi|409395931|ref|ZP_11246956.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Chol1]
gi|409119430|gb|EKM95813.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Chol1]
gi|409120335|gb|EKM96684.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Chol1]
Length = 336
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 111/195 (56%), Gaps = 4/195 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P V + + + + + V+VK RIG++ DSY +LCDF+
Sbjct: 106 GCPSDRVQNN-MIGACLMGHPSLVADCVKAMRDSVGLEVTVKHRIGINGRDSYAELCDFV 164
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+V + R F +H+R A+L G+SP ENR +PPL+Y+ L RDFPDL LNGGI T
Sbjct: 165 GQVRD-AGCRSFTVHARIAILEGLSPKENREVPPLRYDVAAQLKRDFPDLEIILNGGIKT 223
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+DE A L VM+GR AY NP Y L VD ++G+ + ++R Q + + Y +
Sbjct: 224 LDECEAHLHT-FDGVMLGREAYHNP-YLLAQVDQRLFGSSAPVISRAQALRAMRPYIEQH 281
Query: 185 LGTYGNNRPHVRDVM 199
L + G R V+
Sbjct: 282 LASGGTMHHVTRHVL 296
>gi|398804027|ref|ZP_10563030.1| tRNA dihydrouridine synthase A [Polaromonas sp. CF318]
gi|398095035|gb|EJL85385.1| tRNA dihydrouridine synthase A [Polaromonas sp. CF318]
Length = 352
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 107/178 (60%), Gaps = 4/178 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P+ V + + + VPV+VK RIG+D +SY + D
Sbjct: 106 NCGCPSERVQ-RGAFGACLMAEPQLVADCVKAMVDVVAVPVTVKHRIGIDKGESYEFVRD 164
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS + + FI+H+R A L G+SP ENR +PPL+YE + L R+FP L +NGGI
Sbjct: 165 FVGTVSE-AGCKVFIVHARNAWLKGLSPKENREVPPLRYELVHRLKREFPHLGICINGGI 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
NT +EV L VM+GR AY NPW+ L D+A +GA S L+R V + Y
Sbjct: 224 NTQEEVAGHL-AALDGVMIGREAYHNPWW-LASWDSAFFGAAESPLSREAVESQMCDY 279
>gi|296840825|ref|ZP_06863533.2| tRNA dihydrouridine synthase A [Neisseria polysaccharea ATCC 43768]
gi|296839826|gb|EFH23764.1| tRNA dihydrouridine synthase A [Neisseria polysaccharea ATCC 43768]
Length = 319
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 118/222 (53%), Gaps = 6/222 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPSP+V G FG LM + V + ++ + +PV+VK RIGVD Y + D
Sbjct: 80 NCGCPSPRVQ-KGAFGACLMNEVGLVADCLNAMQDAVGIPVTVKHRIGVDRQTEYQTVAD 138
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ + + + FI+H+R A L+G+SP ENR +PPLKY+Y Y L ++FP+L +NGGI
Sbjct: 139 FVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVYRLKQEFPELEIIINGGI 198
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T + + L+ VMVGR AY NP + D YG S + +V++ Y
Sbjct: 199 TTNEAIAGHLQH-VDGVMVGREAYHNP-MVMHEWDRLFYGDTRSPIEYADLVQRLYTYSQ 256
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK-ADAAF 223
A + +R +++ L H G ++R +DAA
Sbjct: 257 AQI--QAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDAAL 296
>gi|238794664|ref|ZP_04638270.1| tRNA-dihydrouridine synthase A [Yersinia intermedia ATCC 29909]
gi|238726053|gb|EEQ17601.1| tRNA-dihydrouridine synthase A [Yersinia intermedia ATCC 29909]
Length = 343
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 118/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+D DSY LC+
Sbjct: 105 NVGCPSDRVQ-NGRFGACLMGEAELVADCIKAMRDVVSIPVTVKTRIGIDQLDSYEFLCE 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ F IH+RKA L+G+SP ENR +PPL YE Y L RDFP LT +NGG+
Sbjct: 164 FVQTVADRGECDIFTIHARKAWLSGLSPKENREVPPLDYERVYQLKRDFPTLTIAINGGV 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L K VM+GR AYQNP L VD ++ A + + + +E Y +
Sbjct: 224 KTLAEAKEHL-KHLDGVMMGREAYQNP-SILTQVDRELFDANAPVVDSVKAIEALYPYIE 281
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + ++ + + +L F PG ++R
Sbjct: 282 QEL----SRGAYLGHITRHILGIFQGIPGARQWRR 312
>gi|409431250|ref|ZP_11262626.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. HYS]
Length = 336
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 123/234 (52%), Gaps = 8/234 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P VG+ + + +PV+VK RIG++ DSY +LCD
Sbjct: 104 NVGCPSDRVQNN-MIGACLMGHPALVGDCVKAMQDAVQIPVTVKHRIGINGRDSYAELCD 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V + R F +H+R A+L G+SP ENR IPPL+Y+ L DFPDL LNGGI
Sbjct: 163 FVGQVRD-AGCRSFTVHARIAILEGLSPKENREIPPLRYDVAAQLKADFPDLELVLNGGI 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L K VM+GR AY NP Y L VD ++G+ + ++R + K + Y
Sbjct: 222 KTLAECQEHL-KIFDGVMLGREAYHNP-YLLAEVDQQLFGSTAPVISRSAALAKLRPYIA 279
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEET 236
A L + G + + + +L PG F++ K + L++
Sbjct: 280 AHLASGGA----MHHITRHILGLGQGFPGARKFRQLLSVDIHKSKDPLALLDQA 329
>gi|383933677|ref|ZP_09987121.1| tRNA-dihydrouridine synthase A [Rheinheimera nanhaiensis E407-8]
gi|383705283|dbj|GAB57212.1| tRNA-dihydrouridine synthase A [Rheinheimera nanhaiensis E407-8]
Length = 331
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 116/215 (53%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM P V + + + ++PV+VK RIG+DD D Y L D
Sbjct: 94 NVGCPSDRVQ-NGMFGACLMAQPARVADCVKAMQDAVSIPVTVKTRIGIDDSDDYQFLQD 152
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ + FIIH+RKA L G+SP ENR IPPL Y L ++FP L +LNGGI
Sbjct: 153 FVSMVAA-AGCEQFIIHARKAWLKGLSPKENREIPPLNYPRVQQLKQEFPQLNISLNGGI 211
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ + L+ VMVGR AY NP L VD+ IY + LT QVV + Y +
Sbjct: 212 KTLQQAKEQLQY-LDGVMVGREAYTNP-LLLSEVDSLIYADTTLPLTPEQVVLQMLPYIE 269
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ G H + + +L F PG ++R
Sbjct: 270 QQM-QQGARFWH---IARHMLGLFQGRPGARQWRR 300
>gi|303272601|ref|XP_003055662.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463636|gb|EEH60914.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 252
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 101/165 (61%), Gaps = 10/165 (6%)
Query: 3 SCGCPSPKVAGHG----CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 58
+ GCPS KV CFG LM DP+ VGE + + +VPV++K R+G D+Y
Sbjct: 91 NAGCPSAKVTSKSDAEKCFGAVLMRDPELVGECLRRMREAVDVPVTLKHRLG----DNYA 146
Query: 59 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 118
+ DF+ +V LS HFI+H+R A+L G+SPA NR+IPPL++ +AL DFP L F+L
Sbjct: 147 YVSDFVQRVHELSGVTHFIVHARAAVLGGLSPAANRSIPPLRHREVHALASDFPKLGFSL 206
Query: 119 NGGINTVDEVNAALRKGA-HHVMVGRAAYQNPWYTLGHVDTAIYG 162
NGG+ TVD+ L G VM+GRA Y++P L VD +YG
Sbjct: 207 NGGVETVDDAVRHLSSGKLKGVMLGRAVYRDP-TILHDVDARVYG 250
>gi|335419680|ref|ZP_08550729.1| tRNA-dihydrouridine synthase A [Salinisphaera shabanensis E1L3A]
gi|334896212|gb|EGM34366.1| tRNA-dihydrouridine synthase A [Salinisphaera shabanensis E1L3A]
Length = 329
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 121/215 (56%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + A ++PV+VK RIG+D+ DSY L
Sbjct: 93 NVGCPSDRVQ-NGTFGACLMGEPQKVADCVAAMKARVSIPVTVKTRIGIDNQDSYEFLHA 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F V++ + I+H+RKA L+G+SP ENR +PPL Y + L RDFP L ++NGGI
Sbjct: 152 FTRAVAT-AGADALIVHARKAWLSGLSPKENREVPPLDYARVHTLKRDFPALPMSINGGI 210
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+D L VM+GR AY+NP Y + VD + A ++ R +V + +
Sbjct: 211 VDLDTAAVQLEH-VDGVMIGREAYKNP-YVMAEVDRRFFDAHAAVPARGDIVANMRGFIA 268
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G ++DV + +L +H +PG ++R
Sbjct: 269 DHLAAGGA----LKDVTRHMLGLYHGQPGGRAWRR 299
>gi|422676216|ref|ZP_16735549.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aceris
str. M302273]
gi|330973923|gb|EGH73989.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aceris
str. M302273]
Length = 339
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 120/213 (56%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P+ V + + + +PV+VK RIG++ DSY +LCDF+
Sbjct: 109 GCPSDRVQNN-MIGACLMAHPELVADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFV 167
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + F +H+R A+L G+SP ENR IPPL+Y+ L DFP L LNGGI T
Sbjct: 168 GKVQE-AGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKSDFPGLEIVLNGGIKT 226
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
+++ + L+ VM+GR AY NP Y L HVD ++G+ + ++R +E + Y A
Sbjct: 227 LEQCSEHLQT-FDGVMLGREAYHNP-YLLAHVDQQLFGSTAPVISRYDALESMRPYIAAH 284
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ + GN R ++ L F PG F++
Sbjct: 285 IASGGNMHHVTRHMLGLGLGF----PGARRFRQ 313
>gi|418529717|ref|ZP_13095649.1| tRNA-dihydrouridine synthase A [Comamonas testosteroni ATCC 11996]
gi|371453237|gb|EHN66257.1| tRNA-dihydrouridine synthase A [Comamonas testosteroni ATCC 11996]
Length = 330
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 108/189 (57%), Gaps = 4/189 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM + V + + +A +VPV+VK RIG+D +SY+ + D
Sbjct: 88 NCGCPSERVQ-RGAFGACLMNEAALVADCVKAMADVVSVPVTVKHRIGIDKIESYDFVRD 146
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ + + F++H+R A L G+SP ENR +PPL+YE L RDFP LT +NGGI
Sbjct: 147 FVGTVAD-AGCQVFVVHARNAWLKGLSPKENREVPPLRYEVVAQLKRDFPGLTIAVNGGI 205
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T DE+ + VMVGR AY NPW+ + D Y S TR + E+ +Y +
Sbjct: 206 KT-DEIVLQQLQQVDGVMVGREAYHNPWW-MSSWDALYYQDKSRERTREHIEEQMVLYME 263
Query: 183 AILGTYGNN 191
+G +
Sbjct: 264 REAREHGTH 272
>gi|238798490|ref|ZP_04641969.1| tRNA-dihydrouridine synthase A [Yersinia mollaretii ATCC 43969]
gi|238717652|gb|EEQ09489.1| tRNA-dihydrouridine synthase A [Yersinia mollaretii ATCC 43969]
Length = 343
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 117/215 (54%), Gaps = 7/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV+VK RIG+D DSY LC+
Sbjct: 105 NVGCPSDRVQ-NGRFGACLMAEANLVADCIKAMRDVVSIPVTVKTRIGIDQLDSYEFLCE 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ F IH+RKA L+G+SP ENR +PPL YE Y L RDFP LT +NGG+
Sbjct: 164 FVQTVAEQGECDIFTIHARKAWLSGLSPKENREVPPLDYERVYQLKRDFPALTIAINGGV 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L K VM+GR AYQNP L VD ++ + + + + +E Y +
Sbjct: 224 KTLAEAKEHL-KHLDGVMMGREAYQNP-SILTQVDRELFDSNAPVVDSVKAIEALYPYIE 281
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L + ++ + + +L F PG ++R
Sbjct: 282 QEL----SRGAYLGHITRHILGIFQGIPGARQWRR 312
>gi|300704326|ref|YP_003745929.1| tRNA-dihydrouridine synthase a [Ralstonia solanacearum CFBP2957]
gi|299071990|emb|CBJ43320.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum CFBP2957]
Length = 326
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 15/190 (7%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +PK V + + + ++PV+VK RIG+D ++Y+ + D
Sbjct: 79 NCGCPSERVQ-RGAFGACLMAEPKLVADCVRAMRDAVSIPVTVKHRIGIDAIETYDFVRD 137
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ ++ + FI+H+R A+L G+SP ENR IPPL+YE Y L RDFP L LNGG+
Sbjct: 138 FVGTIAE-AGCETFIVHARNAILKGLSPKENREIPPLRYEVAYQLKRDFPRLEILLNGGV 196
Query: 123 NTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
T+++++ L AH VM+GR AY +P + + + D YGA + TR +V
Sbjct: 197 QTLEQIDTHL---AHVDGVMIGREAYHHP-HLMANFDARYYGADTVAPTRAEVE------ 246
Query: 181 GDAILGTYGN 190
DA++G G
Sbjct: 247 -DAMIGYVGR 255
>gi|146306962|ref|YP_001187427.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina ymp]
gi|145575163|gb|ABP84695.1| tRNA-U16,U17-dihydrouridine synthase [Pseudomonas mendocina ymp]
Length = 331
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 118/213 (55%), Gaps = 8/213 (3%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P V + + + ++PV+VK RIG++ DSY++LCDF+
Sbjct: 101 GCPSDRVQNN-MIGACLMGHPALVADCVKAMRDAVSIPVTVKHRIGINGRDSYSELCDFV 159
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+V + R F +H+R A+L G+SP ENR IPPL+Y+ L RDFPDL LNGGI T
Sbjct: 160 GQVRD-AGCRSFTVHARIAILEGLSPKENREIPPLRYDVAAQLKRDFPDLEIILNGGIKT 218
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E L+ VM+GR AY NP Y L VD ++GA + ++R + + Y +
Sbjct: 219 LEECEQHLQT-FDGVMLGREAYHNP-YLLAQVDNRLFGAAAPSISRMDALLALKPYVEQH 276
Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G + V + +L PG F++
Sbjct: 277 LREGGT----LHHVSRHVLGLAQGFPGARRFRQ 305
>gi|423211040|ref|ZP_17197593.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AER397]
gi|404614042|gb|EKB11046.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AER397]
Length = 328
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 122/215 (56%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V + + + ++PV+VK RIG+DD DSY L
Sbjct: 89 NVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMRDVVDIPVTVKTRIGIDDQDSYEFLQA 147
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V + FI+H+RKA L+G+SP ENR IPPL Y Y + +D+P LT LNGG+
Sbjct: 148 FIEQVRD-AGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRVKQDYPKLTIALNGGV 206
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L+ VM+GR AYQNP Y L VD ++G ++ +R +VV Y +
Sbjct: 207 TSMEQTLEHLQH-VDGVMMGREAYQNP-YILAQVDNLVFGQNNAVPSRHEVVRMMLPYIE 264
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GN H + + +L F + G ++R
Sbjct: 265 QELAK-GNYLSH---MTRHMLGLFQNMQGARAWRR 295
>gi|429764782|ref|ZP_19297091.1| tRNA dihydrouridine synthase A [Clostridium celatum DSM 1785]
gi|429187550|gb|EKY28462.1| tRNA dihydrouridine synthase A [Clostridium celatum DSM 1785]
Length = 343
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 135/255 (52%), Gaps = 21/255 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD------- 55
+CGCPS +V+G+ G +LM D V E +S + TN PV++K RIG+D D
Sbjct: 98 NCGCPSDRVSGN-LMGAALMADKNLVYEILSAMKEATNKPVTIKHRIGIDGTDVIEGKNN 156
Query: 56 -----SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 110
Y L +F+ VS P R + +H+R A+L G+SP +NR IPPL Y+ Y L +D
Sbjct: 157 KIIMEGYEDLLEFLDTVSKARPDR-YTVHARSAILKGLSPKDNREIPPLDYDMVYRLKKD 215
Query: 111 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTR 170
F L +NGG T++ ++ AL K VM+GRA+Y++ Y L +++ I + ++R
Sbjct: 216 FEYLNIEINGGFKTLESISDALTK-VDGVMIGRASYED-CYLLANLNR-INDKNAKIISR 272
Query: 171 RQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVK 230
++++ Y Y L N V + PL F + G+ FK+ ++ +T+
Sbjct: 273 GEIIKSYIPYVKEELEKGSN----VHSLAAPLQSLFQGQKGSRKFKQLLSSSNVKKETLV 328
Query: 231 SFLEETIVAIPDSVL 245
L ET++ +P +L
Sbjct: 329 EILNETLIVMPQDIL 343
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,685,722,311
Number of Sequences: 23463169
Number of extensions: 198869654
Number of successful extensions: 450819
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1880
Number of HSP's successfully gapped in prelim test: 3318
Number of HSP's that attempted gapping in prelim test: 442874
Number of HSP's gapped (non-prelim): 5555
length of query: 282
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 141
effective length of database: 9,050,888,538
effective search space: 1276175283858
effective search space used: 1276175283858
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)