BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023442
(282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CL29|DUSA_PASMU tRNA-dihydrouridine synthase A OS=Pasteurella multocida (strain
Pm70) GN=dusA PE=3 SV=1
Length = 327
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 136/238 (57%), Gaps = 19/238 (7%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V +G FG LM V + +S + ++PV+VK RIG+DD DSY LC+F+
Sbjct: 98 GCPSDRVQ-NGMFGACLMAKADLVADCVSAMQTEVSIPVTVKTRIGIDDLDSYEFLCEFV 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
KV + + FIIH+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI T
Sbjct: 157 QKVHE-AGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLLMSINGGIKT 215
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
++E+ L+ VMVGR AYQNP LG++D A++ +T R+ VEK Y +
Sbjct: 216 LEEMQQHLQY-MDGVMVGREAYQNP-SLLGYIDQALFDPTCPVVTPREAVEKMFPYIEQQ 273
Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
L G Y N+ V++ +L F S G ++R KA A + + SF+
Sbjct: 274 LSQGVYLNH------VVRHMLGAFQSCKGARQWRRYLSENAHKAGAGLEVVEKALSFV 325
>sp|Q8CWK7|DUSA_VIBVU tRNA-dihydrouridine synthase A OS=Vibrio vulnificus (strain CMCP6)
GN=dusA PE=3 SV=2
Length = 326
Score = 158 bits (400), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 133/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L D
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKEVVDIPVTVKTRIGIDDQDSYEFLTD 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 149 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLTIAINGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQ+P Y L VD ++G+ S RRQ+VE+ Y +
Sbjct: 209 KSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSQSPIKKRRQIVEEMYPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L N ++ + + +L F + PG ++R + L++ + IP
Sbjct: 267 QQLA----NGAYLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGSGIEVLQQALAKIPQ 322
Query: 243 SV 244
+
Sbjct: 323 EL 324
>sp|Q9KUX9|DUSA_VIBCH tRNA-dihydrouridine synthase A OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=dusA PE=3
SV=1
Length = 327
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 7/239 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQ 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+
Sbjct: 149 FIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQNP Y L VD I+G + R QV+ + Y +
Sbjct: 209 KSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
L + H+ + + +L F + PG ++R +E+ + IP
Sbjct: 267 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 321
>sp|Q8Z1T1|DUSA_SALTI tRNA-dihydrouridine synthase A OS=Salmonella typhi GN=dusA PE=3
SV=1
Length = 332
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDTDPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + I D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADAAVLEQALKLIAD 330
>sp|P44794|DUSA_HAEIN tRNA-dihydrouridine synthase A OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusA PE=3 SV=1
Length = 327
Score = 154 bits (389), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 132/239 (55%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI
Sbjct: 155 FIEKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYIRVYQLKRDFPHLTIAINGGI 213
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T++E+ L+ VMVGR AYQNP LG +D A++ + +T + VE Y +
Sbjct: 214 KTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVESMLPYIE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
L + H+ +++ +L F + G ++R K A + +T SF+E
Sbjct: 272 QQL----SQGIHLNHIVRHILGAFQNCKGARQWRRYLSENAFKQGAGIEVVETALSFVE 326
>sp|Q8ZKH4|DUSA_SALTY tRNA-dihydrouridine synthase A OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusA PE=3 SV=1
Length = 332
Score = 154 bits (389), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 98 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 157 FIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E LR VMVGR AYQNP L VD I+GA ++ VV Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R + LE+ + + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>sp|Q7UBC5|DUSA_SHIFL tRNA-dihydrouridine synthase A OS=Shigella flexneri GN=dusA PE=3
SV=2
Length = 330
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 123/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 155 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 215 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 272
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + +++ +L F PG ++R
Sbjct: 273 HELSQGTY------LGHIIRHMLGLFQGIPGARQWRR 303
>sp|P32695|DUSA_ECOLI tRNA-dihydrouridine synthase A OS=Escherichia coli (strain K12)
GN=dusA PE=3 SV=3
Length = 330
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 155 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 215 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 272
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 273 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 303
>sp|Q8X5V6|DUSA_ECO57 tRNA-dihydrouridine synthase A OS=Escherichia coli O157:H7 GN=dusA
PE=3 SV=2
Length = 330
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 96 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 154
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 155 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 215 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 272
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 273 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 303
>sp|Q8FB30|DUSA_ECOL6 tRNA-dihydrouridine synthase A OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dusA PE=3 SV=1
Length = 331
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCD
Sbjct: 97 NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E A L+ VMVGR AYQNP L VD I+G+ + VV Y +
Sbjct: 216 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 273
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L GTY + + + +L F PG ++R
Sbjct: 274 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 304
>sp|Q87L85|DUSA_VIBPA tRNA-dihydrouridine synthase A OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusA PE=3 SV=1
Length = 326
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 132/242 (54%), Gaps = 7/242 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V + ++ + +VPV+VK RIG+DD DSY L D
Sbjct: 90 NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKEVVDVPVTVKTRIGIDDQDSYEFLTD 148
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+
Sbjct: 149 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKQDFSHLTIAINGGV 208
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++E L+ VM+GR AYQ+P Y L VD ++G+ + R ++VE+ Y +
Sbjct: 209 KSLEEAKVHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSNAPVKKRSEIVEEMYPYIE 266
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
A L ++ + + +L F + PG ++R + L++ + IP
Sbjct: 267 AQLA----KGAYLGHITRHMLGLFQNMPGARQWRRHISENAHKPGSGLEVLQDALAKIPK 322
Query: 243 SV 244
+
Sbjct: 323 EL 324
>sp|Q7VNV2|DUSA_HAEDU tRNA-dihydrouridine synthase A OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusA PE=3 SV=1
Length = 323
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 124/217 (57%), Gaps = 13/217 (5%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + ++PV++K RIG+D DSY LCD
Sbjct: 93 NVGCPSDRVQ-NGMFGACLMANADLVADCIKAMQDVVDIPVTIKHRIGIDTLDSYAFLCD 151
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI K+ S + FI+H+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI
Sbjct: 152 FIDKIQPYS--QDFIVHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPQLNISINGGI 209
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+DE+ L K VMVGR AYQNP LG +D ++ +T R VE Y +
Sbjct: 210 KTIDEIKQHLTK-VDGVMVGREAYQNP-ALLGEIDQQLFDQNQPLITARIAVENMLPYIE 267
Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L G Y N+ +++ +L F + G ++R
Sbjct: 268 QQLSKGVYLNH------IVRHMLGAFQNCKGARQWRR 298
>sp|Q8EAJ0|DUSA_SHEON tRNA-dihydrouridine synthase A OS=Shewanella oneidensis (strain
MR-1) GN=dusA PE=3 SV=1
Length = 335
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 131/244 (53%), Gaps = 15/244 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L
Sbjct: 99 NVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTH 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI V + FIIH+RKA L G+SP ENR IPPL Y+ Y L RD+P L ++NGGI
Sbjct: 158 FIDTVMA-KGCGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQLKRDYPALNISINGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
++++ L+ VMVGR AYQNP Y L VD + G+ + ++R V+E Y +
Sbjct: 217 TSLEQAQTHLQH-LDGVMVGREAYQNP-YMLAQVDQVLCGSTKAVMSREAVIEAMLPYIE 274
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEE 235
A L G + + + ++ F PG ++R K A + K ++
Sbjct: 275 AHLQVGG----RLNHITRHMIGLFQGLPGARAWRRYLSENAHKNGAGIEVVKLAYQSVQT 330
Query: 236 TIVA 239
+VA
Sbjct: 331 DLVA 334
>sp|P72872|DUS2_SYNY3 Probable tRNA-dihydrouridine synthase 2 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dus2 PE=3 SV=1
Length = 334
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 120/215 (55%), Gaps = 8/215 (3%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V G FG LM P V + +S + +PV+VK RIG+D DSY L
Sbjct: 97 NVGCPSDRVQS-GNFGACLMAQPDLVAQCVSAMQKAVEIPVTVKHRIGIDHRDSYEDLVH 155
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V++ R F +H+RKA L G+SP ENRTIPPL+YE Y L +DFP L +NGGI
Sbjct: 156 FVEIVANAGCQR-FTVHARKAWLQGLSPKENRTIPPLRYEDVYQLKKDFPQLLIEINGGI 214
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+++ L VMVGRAAY+NP Y VD IY + +R +++E+ Y +
Sbjct: 215 TQTEQIQQHL-SHVDAVMVGRAAYENP-YLFATVDRDIYHKTNLVPSRAEIIERMLPYVE 272
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
L +G+ + + + LL F+ +P ++R
Sbjct: 273 ERL-RHGDR---LNQITRHLLSLFNGQPRAKFWRR 303
>sp|Q8P3X4|DUSA_XANCP tRNA-dihydrouridine synthase A OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dusA PE=3 SV=1
Length = 335
Score = 144 bits (363), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 123/215 (57%), Gaps = 10/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + ++ + A T +PV+VKCR+GVDD D Y
Sbjct: 99 NCGCPSDRVQA-GRFGACLMREPALVADCVAAMCAATALPVTVKCRLGVDDDDDYAVFAG 157
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
FI +V ++H+R A L G+SP ENR +PPL+Y++ Y L ++ P L LNGGI
Sbjct: 158 FIDQVVGAGAAM-VVVHARNAWLKGLSPKENREVPPLRYDWAYRLKQERPALPVVLNGGI 216
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
+V+ A L+ VM+GRAAY +P Y L ++ A+ G P R +++ YQ Y
Sbjct: 217 ASVEASLAHLQH-TDGVMLGRAAYHDP-YVLHQLEAALSGRPER--ARADLLQAYQPYVQ 272
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
A L + ++ + + +L FH +PG +F++
Sbjct: 273 AQL----DQGLALKHMTRHILGLFHGQPGGRVFRQ 303
>sp|Q8ZJ14|DUSA_YERPE tRNA-dihydrouridine synthase A OS=Yersinia pestis GN=dusA PE=3 SV=1
Length = 345
Score = 137 bits (345), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 124/245 (50%), Gaps = 7/245 (2%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V +G FG LM + V + + + +PV+VK RIG+D DSY LC+
Sbjct: 105 NVGCPSDRVQ-NGRFGACLMGEADLVADCIKAMRDAVAIPVTVKTRIGIDQLDSYEFLCE 163
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V+ F IH+RKA L+G+SP ENR +PPL YE Y L RDFP LT +NGG+
Sbjct: 164 FVQTVAERGECEIFTIHARKAWLSGLSPKENREVPPLDYERVYQLKRDFPALTIAINGGV 223
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+ E L K VM+GR AYQNP L VD ++ + + + +E Y +
Sbjct: 224 KTLAEAKEHL-KHLDGVMMGREAYQNPG-ILTQVDRELFDPNAPVVDSVKAIEALYPYIE 281
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
L + ++ + + +L F PG ++R S +EE + +
Sbjct: 282 QEL----SQGAYLGHITRHILGIFQGIPGARQWRRHLSENAHKPGAGVSVVEEALALVSP 337
Query: 243 SVLDS 247
S +S
Sbjct: 338 SYYES 342
>sp|Q9I048|DUSA_PSEAE tRNA-dihydrouridine synthase A OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusA
PE=3 SV=1
Length = 332
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 108/187 (57%), Gaps = 11/187 (5%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V H G LM P V + + + + V+VK RIG++ DSY +LCDF+
Sbjct: 102 GCPSDRVQ-HNMIGACLMGHPALVADCVKAMLDAVEIAVTVKHRIGINGRDSYAELCDFV 160
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+V + R F +H+R A+L G+SP ENR +PPL+YE L +DFPDL LNGGI T
Sbjct: 161 GQVRE-AGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQLKKDFPDLEIVLNGGIKT 219
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTR-------RQVVEKY 177
++ L + VM+GR AY NP Y L VD+ ++G+ + L+R R +E++
Sbjct: 220 LEACREHL-QTFDGVMLGREAYHNP-YLLAAVDSQLFGSEAPPLSRSEALLRLRPYIERH 277
Query: 178 QIYGDAI 184
Q G A+
Sbjct: 278 QAEGGAM 284
>sp|Q88KX0|DUSA_PSEPK tRNA-dihydrouridine synthase A OS=Pseudomonas putida (strain
KT2440) GN=dusA PE=3 SV=1
Length = 336
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 105/176 (59%), Gaps = 4/176 (2%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCPS +V + G LM P V + + + + PV+VK RIG++ DSY +L DF+
Sbjct: 106 GCPSDRVQNN-MIGACLMAHPALVADCVKAMRDAVSTPVTVKHRIGINGRDSYAELSDFV 164
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
+V + R F +H+R A+L G+SP ENR IPPL+Y+ L RDFPDL LNGGI T
Sbjct: 165 GQVRE-AGCRSFTVHARIAILEGLSPKENREIPPLRYDIAAQLKRDFPDLEIVLNGGIKT 223
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
+DE A L + VM+GR AY NP Y L VD ++G+ + ++R + + + + Y
Sbjct: 224 LDECQAHL-ETFDGVMLGREAYHNP-YLLAEVDQQLFGSDAPVVSRSEALAQLRPY 277
>sp|Q884G7|DUSA_PSESM tRNA-dihydrouridine synthase A OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=dusA PE=3 SV=1
Length = 336
Score = 134 bits (337), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 126/239 (52%), Gaps = 15/239 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCPS +V + G LM P+ V + + + +PV+VK RIG++ DSY +LCD
Sbjct: 104 NVGCPSDRVQNN-MIGACLMAHPQLVADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCD 162
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V + + F +H+R A+L G+SP ENR IPPL+Y+ L DFP+L LNGGI
Sbjct: 163 FVGTVHD-AGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKTDFPELEIVLNGGI 221
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T+++ + L+ VM+GR AY NP Y L VD ++G+ + ++R +E + Y
Sbjct: 222 KTLEQCSEHLQT-FDGVMLGREAYHNP-YLLAQVDQQLFGSVAPVISRHAALESMRPYIA 279
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
A + + GN R ++ L F PG F++ KA+ FLE
Sbjct: 280 AHIASGGNMHHVTRHMLGLGLGF----PGARRFRQLLSVDIHKAENPLLLLDQAAKFLE 334
>sp|Q9PGB5|DUSA_XYLFA tRNA-dihydrouridine synthase A OS=Xylella fastidiosa (strain 9a5c)
GN=dusA PE=3 SV=1
Length = 340
Score = 134 bits (337), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 129/247 (52%), Gaps = 21/247 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + ++ +AA +VPV+VKCR+GV++ D Y +
Sbjct: 102 NCGCPSDRVQA-GSFGARLMREPALVADCVAAMAAVVSVPVTVKCRLGVNEDDDYGRFAK 160
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ VS S +R ++H+R A L G+SP ENR IPPL+Y++ Y L R+ P+L LNGGI
Sbjct: 161 FVDWVSRASSSRMIVVHARNAWLQGLSPKENREIPPLRYDWVYRLKRERPELAVVLNGGI 220
Query: 123 NTVDEVNAALRKGAHH------VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEK 176
+V+ G H VM+GRAAYQ+P Y L D A+ AP +
Sbjct: 221 TSVE-------AGLDHLLMVDGVMLGRAAYQDP-YILHQFDCALSNAPLLPRALLLRALR 272
Query: 177 YQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEET 236
+ + +R +++ L FH +PG +F++ Q S +E+
Sbjct: 273 PYVE------VWLEQGLTLRHIVRHLFGLFHGQPGGRVFRQVLTQGGQRSDADWSLVEQA 326
Query: 237 IVAIPDS 243
+ I D
Sbjct: 327 LSIIEDQ 333
>sp|Q87AY2|DUSA_XYLFT tRNA-dihydrouridine synthase A OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=dusA PE=3 SV=1
Length = 332
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 132/244 (54%), Gaps = 21/244 (8%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V + ++ +AA +VPV+VKCR+GV++ D Y +
Sbjct: 102 NCGCPSDRVQA-GSFGACLMREPALVADCVAAMAAVVSVPVTVKCRLGVNEDDDYGRFAK 160
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ V S +R ++H+R A L G+SP ENR IPPL+Y++ Y L R+ P+L LNGGI
Sbjct: 161 FVDWVIGASSSRMIVVHARNAWLQGLSPKENREIPPLRYDWVYRLKRECPELAVVLNGGI 220
Query: 123 NTVDEVNAALRKGAHH------VMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEK 176
+V+ G H VM+GRAAYQ+P Y L A+ AP R ++
Sbjct: 221 TSVE-------AGLDHLLMVDGVMLGRAAYQDP-YILHQFYCALSNAPVL--PRALLLRA 270
Query: 177 YQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEET 236
+ Y +A L +R +++ LL FH +PG +F++ Q S +E+
Sbjct: 271 LRPYVEAWL----EQGVTLRHIVRHLLGLFHGQPGGRVFRQVLTQGGQRSDADWSLVEQA 326
Query: 237 IVAI 240
+ I
Sbjct: 327 LSII 330
>sp|Q8PFF8|DUSA_XANAC tRNA-dihydrouridine synthase A OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=dusA PE=3 SV=1
Length = 334
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 122/215 (56%), Gaps = 10/215 (4%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCPS +V G FG LM +P V E ++ + A T++P++VKCR+GVDD D Y
Sbjct: 98 NCGCPSDRVQA-GRFGACLMREPALVAECVAAMCAATHLPITVKCRLGVDDDDDYALFAR 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
F+ +V + ++H+R A L G+SP ENR +PPL+Y++ Y L ++ P L LNGGI
Sbjct: 157 FVDQVVAAG-AAMVVVHARNAWLKGLSPKENREVPPLRYDWAYRLKQERPGLPVVLNGGI 215
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
V+ A L+ A VM+GRAAY +P Y L +D A+ P R ++ YQ Y +
Sbjct: 216 VAVEPAIAHLQH-ADGVMLGRAAYHDP-YVLHCLDAALNQRPEQ--PRESLLRAYQPYVE 271
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
+ L G H + + +L FH +PG F++
Sbjct: 272 SQLAQ-GLGLKH---MTRHVLGLFHGQPGGRAFRQ 302
>sp|Q9ZLB6|DUS_HELPJ Probable tRNA-dihydrouridine synthase OS=Helicobacter pylori
(strain J99) GN=dus PE=3 SV=1
Length = 328
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 18/184 (9%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPV-SVKCRIGVDDHDSYNQLC 61
+CGCP+PKVA HG G L+ D + E + VI NTN + SVK R+G + ++
Sbjct: 95 NCGCPAPKVANHGN-GSGLLKDLNHLVEILKVIRENTNKKITSVKVRLGFE-----KKIP 148
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
I + +P + ++H R + ++ + YE AL++ NG
Sbjct: 149 KEIAHALNDAPVDYVVVHGR-------TRSDRYQKDKIDYE-SIALMKKILKKPVIANGE 200
Query: 122 INTVDEVNAALR-KGAHHVMVGRAAYQNPW--YTLGHVDTAIYGAPSSGLTRRQVVEKYQ 178
I++V + L+ A +M+GRA + PW + + + T + L + +
Sbjct: 201 IDSVKKAFEVLQITQADGLMIGRATLRAPWIFWQIRNNTTELPAVVKKDLVLEHFDKMVE 260
Query: 179 IYGD 182
YGD
Sbjct: 261 FYGD 264
>sp|Q50049|DUS_MYCLE Probable tRNA-dihydrouridine synthase OS=Mycobacterium leprae
(strain TN) GN=dus PE=3 SV=1
Length = 384
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 111/261 (42%), Gaps = 30/261 (11%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGE--AMSVIAA-NTNVPVSVKCRIGVDD-HDSYNQL 60
GCP PKV G G +L + G+ A +V A T +PV+VK RIG+DD H ++
Sbjct: 114 GCPMPKVTRRGG-GAALPYKRRLFGQIVAAAVRATEGTKIPVTVKFRIGIDDEHHTHLD- 171
Query: 61 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 120
+++ +H+R A A+ I LK + +R P L NG
Sbjct: 172 ---AGRIAEAEGAAAVALHARTAAQRYSGTADWAQIAQLKQQ-----VRTIPVLG---NG 220
Query: 121 GI-NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSG-LTRRQVVEKYQ 178
I + D + G V++GR PW + A G P+ T +V E +
Sbjct: 221 DIYDASDALAMMAVTGCDGVVIGRGCLGRPWL-FAELSAAFTGRPAPAPPTLGEVAEIVR 279
Query: 179 IYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE--ET 236
+G ++ +G ++ +RD+ K + + H P G R A A +T + L +
Sbjct: 280 RHGKLLVAHFGEDK-GMRDIRKHIAWYLHGFPA-GSELRNALALVKTLDELDCLLNRLDG 337
Query: 237 IVAIPDSVLDSPIEEAPRGRE 257
V PD+ + PRGR+
Sbjct: 338 AVPFPDAAI------GPRGRQ 352
>sp|O31546|DUS2_BACSU Probable tRNA-dihydrouridine synthase 2 OS=Bacillus subtilis
(strain 168) GN=dus2 PE=3 SV=1
Length = 325
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 19/153 (12%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCP P VAG+G G L+ P E + A +PVSVK R+G D D + +
Sbjct: 102 NMGCPVPNVAGNGK-GSGLICRPAVAAELIQAAKAG-GLPVSVKTRLGYTDVDEWREWLT 159
Query: 63 FIYK--VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTL 118
I K +++LS IH R A IP +K LRD PD T+
Sbjct: 160 HILKQDIANLS------IHLRTRAEMSKVDAHWELIPEIKK------LRDEVAPDTLLTI 207
Query: 119 NGGI-NTVDEVNAALRKGAHHVMVGRAAYQNPW 150
NG I + + A + G +M+GR + NP+
Sbjct: 208 NGDIPDRQTGLKLAEQYGVDGIMIGRGIFTNPF 240
>sp|O53835|DUS_MYCTU Probable tRNA-dihydrouridine synthase OS=Mycobacterium tuberculosis
GN=dus PE=3 SV=1
Length = 389
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 113/260 (43%), Gaps = 28/260 (10%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGE--AMSVIAA-NTNVPVSVKCRIGVDDHDSYNQLC 61
GCP PKV G G +L + G+ A +V A T++PV+VK RIG+D D+++
Sbjct: 119 GCPVPKVTKRGG-GAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGID--DAHHTHL 175
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
D +++ +H+R A A+ I LK +R P L NG
Sbjct: 176 D-AGRIAEAEGAAAVALHARTAAQRYSGTADWEQIARLKQH-----VRTIPVLG---NGD 226
Query: 122 I-NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPS-SGLTRRQVVEKYQI 179
I + D + G V++GR PW + A G+P+ + T +V + +
Sbjct: 227 IYDAGDALAMMSTTGCDGVVIGRGCLGRPWL-FAELSAAFTGSPAPTPPTLGEVADIIRR 285
Query: 180 YGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE--ETI 237
+G + +G ++ +RD+ K + + H P R+A A +T + L+ +
Sbjct: 286 HGTLLAAHFGEDK-GMRDIRKHIAWYLHGFPAGSAL-RRALAMVKTFDELDCLLDRLDGT 343
Query: 238 VAIPDSVLDSPIEEAPRGRE 257
V PDS + RGR+
Sbjct: 344 VPFPDSATGA------RGRQ 357
>sp|P45672|DUS_AZOBR Probable tRNA-dihydrouridine synthase OS=Azospirillum brasilense
GN=dus PE=3 SV=1
Length = 328
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 18/150 (12%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP KV +G G SLM D + A +PV++K R G DD S N +
Sbjct: 101 GCPVKKVV-NGHAGSSLMRDEALAARILEATAKAVTIPVTLKMRKGWDD-SSLN--APRL 156
Query: 65 YKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+++ + +H +R+ NG + + +++ + +NG I
Sbjct: 157 ARIAEECGIKLVTVHGRTREQFYNGTADWS-----------FIRSVKEAVSIPVVVNGDI 205
Query: 123 NTVDEVNAAL-RKGAHHVMVGRAAYQNPWY 151
+ D V+ AL GA VM+GR AY PW+
Sbjct: 206 TSFDAVDRALAESGADGVMIGRGAYGRPWF 235
>sp|Q92JQ6|DUS_RICCN Probable tRNA-dihydrouridine synthase OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=dus PE=3 SV=2
Length = 331
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 80/193 (41%), Gaps = 24/193 (12%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP+ KV G G G +LM D + + +PV+VK R+G DD+ + +
Sbjct: 101 GCPAKKVVG-GYSGSALMKDEQLAAKIFEATVEAVKLPVTVKMRMGWDDN---TKNAPTL 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
K++ S + +H R A+ I +K + + NG I
Sbjct: 157 AKIAESSGVQMITVHGRTRCQFYSGNADWDFIRSVK---------ESVKIPVIANGDITN 207
Query: 125 VDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVDTAI-----YGAPSSGLTRRQVVEKYQ 178
+ AL+K GA +MVGR AY PW + +D + APS V E Y+
Sbjct: 208 FAKAKEALQKSGADGIMVGRGAYGKPWL-ISQIDHYLKTGEEKSAPSIAEQLDIVTEHYE 266
Query: 179 IYGDAILGTYGNN 191
AIL YG +
Sbjct: 267 ----AILDYYGES 275
>sp|O25427|DUS_HELPY Probable tRNA-dihydrouridine synthase OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=dus PE=3 SV=1
Length = 328
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 18/184 (9%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPV-SVKCRIGVDDHDSYNQLC 61
+CGCP+PKVA HG G L+ D + + + I NT+ + SVK R+G + ++
Sbjct: 95 NCGCPAPKVANHGN-GSGLLKDLNHLVKLLKTIRENTSKKITSVKVRLGFE-----KKIP 148
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
I + +P + ++H R + ++ + YE AL++ NG
Sbjct: 149 KEIAHALNDAPVDYVVVHGR-------TRSDKYQKDKIDYE-SIALMKKILKKPVIANGE 200
Query: 122 INTVDEVNAALR-KGAHHVMVGRAAYQNPW--YTLGHVDTAIYGAPSSGLTRRQVVEKYQ 178
I++V + L+ A +M+GRAA + PW + + + T + L + +
Sbjct: 201 IDSVKKAFEVLQITQADGLMIGRAALRAPWIFWQIRNNTTKLPAVVKKDLVLEHFDKMVE 260
Query: 179 IYGD 182
YGD
Sbjct: 261 FYGD 264
>sp|Q8PP72|DUSB_XANAC tRNA-dihydrouridine synthase B OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=dusB PE=3 SV=1
Length = 332
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD-DHDSYNQLCDF 63
GCP+ KV + G +LM D + V ++ + NVPV++K R G D DH +
Sbjct: 99 GCPAKKVC-NAWAGSALMRDEELVARILTAVVQAVNVPVTLKIRTGWDCDHRN----GPT 153
Query: 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 123
I +++ +H R + AE TI +K + NG I+
Sbjct: 154 IARIAQDCGIAALAVHGRTRDQHYTGSAEYATIAQIKAAL---------QIPVVANGDID 204
Query: 124 TVDEVNAALRK-GAHHVMVGRAAYQNPW 150
+ + LR+ GA VM+GRAA PW
Sbjct: 205 SPQKAAQVLRETGADAVMIGRAAQGRPW 232
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-HDSYNQLC 61
+ GCP+ KV G +L+ +P+ V + + +VPV++K R G D H ++ Q+
Sbjct: 97 NMGCPAKKV-NKKMAGSALLREPQLVARILDAVVNAVDVPVTLKIRTGWDKTHKNFLQIA 155
Query: 62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
K + T H +R L NG AE +I +K + ++ NG
Sbjct: 156 KIAEKAGISALTIHG--RTRDCLFNG--QAEYESIKAVKQAVFMPII---------ANGD 202
Query: 122 INTVDEVNAALR-KGAHHVMVGRAAYQNPW 150
I + + L GA VM+GR ++ PW
Sbjct: 203 ITSPQKAKDVLDYTGADAVMIGRGSFGRPW 232
>sp|P44965|DUSB_HAEIN tRNA-dihydrouridine synthase B OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusB PE=3 SV=1
Length = 330
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 26/189 (13%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP+ KV G +L+ P V + + + + NVPV++K R G D N+ C I
Sbjct: 99 GCPAKKV-NRKLAGSALLQFPDLVEKILREVVSAVNVPVTLKIRTG---WDKSNRNCVQI 154
Query: 65 YKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
K++ + +H +R L G AE I +K ++ NG I
Sbjct: 155 GKIAEQCGIQALTVHGRTRACLFEG--EAEYDNIKAVKQAIAIPVI---------ANGDI 203
Query: 123 NTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVD----TAIYGAPS----SGLTRRQV 173
++ + L GA +M+GRAA NPW + +I PS G R +
Sbjct: 204 DSARKAKFVLNYTGADAIMIGRAALGNPWLFQAVENLIEHNSISQMPSLKEKCGQILRHI 263
Query: 174 VEKYQIYGD 182
E +Q YG+
Sbjct: 264 QELHQFYGE 272
>sp|Q4UNJ4|DUS_RICFE Probable tRNA-dihydrouridine synthase OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=dus PE=3 SV=1
Length = 325
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 14/147 (9%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP+ KV G G G +LM D + + +P++VK R+G DD+ + +
Sbjct: 101 GCPAKKVVG-GYAGSALMRDEQLAAKIFEATVKAVKIPITVKMRMGWDDN---TKNAPDL 156
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
K++ S + +H R A+ I +K + + NG I
Sbjct: 157 AKIAESSGVQMVTVHGRTRCQFYSGNADWDFIRSVK---------EAVKIPVIANGDITN 207
Query: 125 VDEVNAALRK-GAHHVMVGRAAYQNPW 150
+ AL+K GA +MVGR AY PW
Sbjct: 208 FAKAKEALQKSGADGIMVGRGAYGKPW 234
>sp|Q9ZED2|DUS_RICPR Probable tRNA-dihydrouridine synthase OS=Rickettsia prowazekii
(strain Madrid E) GN=dus PE=3 SV=2
Length = 327
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 18/149 (12%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP+ KV G G G +LM D + + +PV+VK RIG DD+ + +
Sbjct: 101 GCPAKKVVG-GYAGSALMRDEQLAAKIFEATVKAVKIPVTVKMRIGWDDN---TRNAPTL 156
Query: 65 YKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
K+++ S + +H R +G + + + +++ + NG I
Sbjct: 157 AKIAANSGVQMVTVHGRTRCQFYSGNANWD-----------FIRTVKEAVKIPVIANGDI 205
Query: 123 NTVDEVNAAL-RKGAHHVMVGRAAYQNPW 150
+ AL R GA +MVGR Y PW
Sbjct: 206 TNFAKAKEALQRSGADGIMVGRGVYGKPW 234
>sp|Q88DK5|DUSB_PSEPK tRNA-dihydrouridine synthase B OS=Pseudomonas putida (strain
KT2440) GN=dusB PE=3 SV=1
Length = 337
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 22/237 (9%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP+ KV G +L+ D V E + + + +VPV++K R G D N+ +
Sbjct: 102 GCPAKKVCNKAA-GSALLRDEALVSEILHAVVSAVDVPVTLKIRTG---WDRANKNGLNV 157
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
K++ + + +H R AE TI +K + NG I +
Sbjct: 158 AKIAEQAGIQALAVHGRTRADLYTGEAEYDTIGAIKQAVSIPVF---------ANGDITS 208
Query: 125 VDEVNAALRK-GAHHVMVGRAAYQNPWY--TLGHVDTAIYGAPSSGLTRRQVVEKYQIYG 181
++ A L G +++GRAA PW + H P+ L VE+ +
Sbjct: 209 PEKARAVLETTGVDGLLIGRAAQGRPWIFREIEHYLRTGEHLPAPQLDE---VERILLEH 265
Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQT---CKTVKSFLEE 235
A L + + VR K + + + PG F+ + +A T C V++F E
Sbjct: 266 LAALHAFYGDVMGVRIARKHVGWYLATRPGGKEFRARFNALEDTQAQCANVRAFFSE 322
>sp|P37567|DUS1_BACSU Probable tRNA-dihydrouridine synthase 1 OS=Bacillus subtilis
(strain 168) GN=dus1 PE=3 SV=1
Length = 333
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 91/238 (38%), Gaps = 29/238 (12%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCP PK+ G +LDP + E +S + N PV+VK R+G D+ D
Sbjct: 99 NMGCPVPKITKCDA-GAKWLLDPDKIYEMVSAVVDAVNKPVTVKMRMGWDE--------D 149
Query: 63 FIYKVSSLSPT-----RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 117
I+ V + + +H R + A I +K ++
Sbjct: 150 HIFAVKNAQAVERAGGKAVALHGRTRVQMYEGTANWDIIKEVKQSVSIPVIG-------- 201
Query: 118 LNGGINTVDEVNAAL-RKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEK 176
NG + T + L G VM+GRAA NPW V G R+ +
Sbjct: 202 -NGDVKTPQDAKRMLDETGVDGVMIGRAALGNPWMIYRTVQYLETGKLKEEPQVREKMAV 260
Query: 177 YQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE 234
+++ D ++ G N VR++ K + GN + + C+T + F++
Sbjct: 261 CKLHLDRLIDLKGEN-VAVREMRKHAAWYLKGVKGNANVRNE----INHCETREEFVQ 313
>sp|Q08111|DUS_RHOCB Probable tRNA-dihydrouridine synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=dus PE=3
SV=1
Length = 324
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 24/195 (12%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCP+ KV G G G +LM +P + + ++PV++K R+G D+ D N
Sbjct: 100 NMGCPAKKVTG-GLSGAALMRNPDHALRLIEAVVGAVDLPVTLKMRLGWDE-DQLNAAE- 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
I + + + +IH R + A+ R I ++ NG I
Sbjct: 157 -IAARAEAAGVKMIVIHGRTRMQFYTGAADWRAIAAVRAAVSV---------PVVANGDI 206
Query: 123 NTVDEVNAAL-RKGAHHVMVGRAAYQNPWYTLGHVDTAIYGA-----PSSGLTRRQVVEK 176
AL + GA VMVGR A PW L + A++G PS V E
Sbjct: 207 TDAASARRALDQSGAAGVMVGRGAQGAPWR-LAQIAAALFGKADPKLPSGSEFSDFVSEH 265
Query: 177 YQIYGDAILGTYGNN 191
Y+ AIL YG +
Sbjct: 266 YE----AILSFYGRD 276
>sp|Q68XZ3|DUS_RICTY Probable tRNA-dihydrouridine synthase OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=dus PE=3 SV=1
Length = 327
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 18/149 (12%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP+ KV G G G +LM D + + +PV+VK R+G DD+ + +
Sbjct: 101 GCPAKKVVG-GYAGSALMRDERLATKIFEATVKAVKIPVTVKMRMGWDDN---TKNAPTL 156
Query: 65 YKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+++ S + +H R +G + + + ++++ + NG I
Sbjct: 157 AVIAASSGVQMVTVHGRTRCQFYSGNANWD-----------FIRVVKEAVKIPVIANGDI 205
Query: 123 NTVDEVNAALRK-GAHHVMVGRAAYQNPW 150
+ AL+K GA +MVGR Y PW
Sbjct: 206 TNFAKAKEALQKSGADGIMVGRGVYGKPW 234
>sp|P41504|DUS_RHILP Probable tRNA-dihydrouridine synthase OS=Rhizobium leguminosarum
bv. phaseoli GN=dus PE=3 SV=1
Length = 317
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 14/151 (9%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCP+ KV G G G +LM DP + ++PV++K R+G D+ +S N
Sbjct: 91 NMGCPAKKVIG-GYSGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDE-NSIN--AP 146
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
I + + S + IH R + A+ I +R+ + NG +
Sbjct: 147 DIARRAEASGIQLVTIHGRTRMQFYEGRADWDAIRA---------VREVISVPLIANGDV 197
Query: 123 NTVDEVNAALRK-GAHHVMVGRAAYQNPWYT 152
T + LR+ GA VM+GR PW+
Sbjct: 198 ETAHDAQEILRRSGADAVMIGRGCQGRPWHA 228
>sp|Q8PCH1|DUSB_XANCP tRNA-dihydrouridine synthase B OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dusB PE=3 SV=1
Length = 332
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 16/148 (10%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD-DHDSYNQLCDF 63
GCP+ KV + G +LM D V +S + +VPV++K R G D DH +
Sbjct: 99 GCPAKKVC-NAWAGSALMRDEDLVARILSAVVRAVDVPVTLKIRTGWDCDHRNGPT---- 153
Query: 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 123
I +++ +H R + AE TI +K ++ NG I+
Sbjct: 154 IARIAQDCGIAALAVHGRTRDQHYTGTAEYATIAQIKAALQIPVI---------ANGDID 204
Query: 124 TVDEVNAALR-KGAHHVMVGRAAYQNPW 150
+ + LR G VM+GRAA PW
Sbjct: 205 SPQKAAQVLRDTGVDAVMIGRAAQGRPW 232
>sp|Q1RH84|DUS_RICBR Probable tRNA-dihydrouridine synthase OS=Rickettsia bellii (strain
RML369-C) GN=dus PE=3 SV=1
Length = 326
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 28/195 (14%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP+ KV +G G +LM D + +PV+VK R+G DD + +
Sbjct: 101 GCPAKKVV-NGYSGSALMRDEGLAAKIFEAAVKAVKIPVTVKMRMGWDDQ---TKNAPTL 156
Query: 65 YKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
K++ S + +H R +G + E + +++ + NG I
Sbjct: 157 AKIAERSGIQMVTVHGRTRCQFYSGNADWE-----------FIKNVKEAVKIPVIANGDI 205
Query: 123 NTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVDTAIYG-----APSSGLTRRQVVEK 176
+ AL K A VMVGR AY PW + +D + APS V+E
Sbjct: 206 TNFAKAKEALEKSSADGVMVGRGAYGKPWL-ISQIDHYLKTGEEKPAPSIESQLDIVLEH 264
Query: 177 YQIYGDAILGTYGNN 191
YQ AI+ YG +
Sbjct: 265 YQ----AIVDYYGES 275
>sp|A5DTS1|DUS3_LODEL tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=DUS3 PE=3 SV=1
Length = 642
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 85/225 (37%), Gaps = 14/225 (6%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+CGCP + G L P+ + ++ A++ ++PV++K R GV ++ N
Sbjct: 364 NCGCPIDLLFKQGQGSALLDSPPRLIRIVKAMNASSGDIPVTIKIRTGVKENK--NTAVH 421
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL---------KYEYYYALLRDFPD 113
+ +V + +H R A+ I + K E RD
Sbjct: 422 LVNRVLEETQVAAITLHGRSRQQRYTKEADWDYIEEVGKVVKTWNEKREDEDKEGRDTNP 481
Query: 114 LTFTLNGGINT-VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQ 172
F NG + + D N R+G VMV R A PW V+ Y SS R
Sbjct: 482 TWFVGNGDVYSHEDWYNGVNREGVDSVMVARGALIKPW-IFEEVEAQQYLDKSS-TERLA 539
Query: 173 VVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
++EKY Y G+ + R M L F H G+ +R
Sbjct: 540 MLEKYAKYAVEHWGSDEYGVSNARRFMCEFLSFTHRYVPVGILER 584
>sp|Q9HUW1|DUSB_PSEAE tRNA-dihydrouridine synthase B OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusB
PE=3 SV=1
Length = 332
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCP+ KV G +L+ D V E + + +VPV++K R G D D+ N +
Sbjct: 100 NMGCPAKKVCNKAA-GSALLRDEALVAEILDAVVRAVDVPVTLKIRTGWD-RDNRNGVT- 156
Query: 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
+ K++ + + +H R AE TI +K + NG I
Sbjct: 157 -VAKLAEQAGIQALAVHGRTRADLYTGEAEYETIAAIKQAVSIPVF---------ANGDI 206
Query: 123 NTVDEVNAALRK-GAHHVMVGRAAYQNPW 150
++ ++ + + G +++GRAA PW
Sbjct: 207 DSPEKARKVIEQTGVDALLIGRAAQGRPW 235
>sp|Q9CLW3|DUSB_PASMU tRNA-dihydrouridine synthase B OS=Pasteurella multocida (strain
Pm70) GN=dusB PE=3 SV=2
Length = 332
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP+ KV G +L+ P V + ++ + + VPV++K R G D N+ C I
Sbjct: 99 GCPAKKV-NRKMAGSALLQYPDLVKQILNKVVKSVTVPVTLKIRTGWDKD---NRNCLEI 154
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
K++ + IH R AE I +K + + NG I +
Sbjct: 155 AKIAEQCGIQALTIHGRTRSCMFEGEAEYDNIKAVKEQL---------SIPIIANGDITS 205
Query: 125 VDEVNAALR-KGAHHVMVGRAAYQNPW 150
++ L A +M+GR + NPW
Sbjct: 206 AEKAKYVLDYTNADAIMIGRGSLGNPW 232
>sp|O52533|DUSB_PROVU tRNA-dihydrouridine synthase B OS=Proteus vulgaris GN=dusB PE=3
SV=2
Length = 323
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 65/149 (43%), Gaps = 18/149 (12%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP+ KV G +L+ P V E +S + +VPV++K R G D N C I
Sbjct: 99 GCPAKKV-NKKLAGSALLRHPDLVAEILSAVVNAVDVPVTLKIRTGWSP-DERN--CVEI 154
Query: 65 YKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
K++ + IH +R+ L G AE +I +K ++ NG I
Sbjct: 155 AKLAERCGIQALTIHGRTRECLFKG--EAEYDSIRTVKQNVSIPII---------ANGDI 203
Query: 123 NTVDEVNAALR-KGAHHVMVGRAAYQNPW 150
+ A L GA +M+GRAA PW
Sbjct: 204 TDPLKARAVLDYTGADALMIGRAAQGRPW 232
>sp|Q8Z5B2|DUSC_SALTI tRNA-dihydrouridine synthase C OS=Salmonella typhi GN=dusC PE=3
SV=1
Length = 312
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 16/150 (10%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN--TNVPVSVKCRIGVDDHDSYNQL 60
+CGCPS V G G G +L+ DP+ + + + A +++PV+VK R+G D D ++
Sbjct: 95 NCGCPSKVVNGSGG-GATLLTDPELIYQGAKAMRAAVPSHLPVTVKVRLGWDSGDRKFEI 153
Query: 61 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 120
D + + + ++H R + A+ + ++ +R + NG
Sbjct: 154 ADAVQQAGA----SELVVHGR-------TKAQGYRAEHIDWQ-AIGEIRQRLTIPVIANG 201
Query: 121 GINTVDEVNAAL-RKGAHHVMVGRAAYQNP 149
I A + G VM+GR A P
Sbjct: 202 EIWDWQSAQACMATSGCDAVMIGRGALNIP 231
>sp|O52539|DUSB_ERWCA tRNA-dihydrouridine synthase B OS=Erwinia carotovora GN=dusB PE=3
SV=2
Length = 321
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 20/150 (13%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-VDDHDSYNQLCDF 63
GCP+ KV G +L+ P V + +S + +VPV++K R G +H + C
Sbjct: 99 GCPAKKV-NRKMAGSALLQYPDLVKQILSTVVKAVDVPVTLKIRTGWAPEHRN----CVE 153
Query: 64 IYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
I K++ + IH +R L NG AE +I +K + NG
Sbjct: 154 IAKLAEDCGIQALTIHGRTRACLFNGF--AEYDSIRAVKQAV---------SIPIIANGD 202
Query: 122 INTVDEVNAALR-KGAHHVMVGRAAYQNPW 150
I + A L GA +M+GRAA PW
Sbjct: 203 ITDPHKARAVLDYTGADALMIGRAAQGRPW 232
>sp|Q87KU1|DUSB_VIBPA tRNA-dihydrouridine synthase B OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusB PE=3 SV=2
Length = 322
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 14/147 (9%)
Query: 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
GCP+ KV G +L+ P + E + + +VPV++K R G D+ N+ C I
Sbjct: 99 GCPAKKV-NKKLAGSALLQYPTIIEEILKAVVNAVDVPVTLKTRTG---WDTDNKNCVQI 154
Query: 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
K++ + +H R AE +I +K + + NG I++
Sbjct: 155 AKLAEDCGIQALALHGRTKACMYKGEAEYDSIKAVK---------EAISIPVIANGDIDS 205
Query: 125 VDEVNAALR-KGAHHVMVGRAAYQNPW 150
++ L GA +M+GR A PW
Sbjct: 206 PEKAKFVLEYTGADALMIGRPAQGRPW 232
>sp|Q8ZNM4|DUSC_SALTY tRNA-dihydrouridine synthase C OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusC PE=3 SV=1
Length = 312
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 16/150 (10%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN--TNVPVSVKCRIGVDDHDSYNQL 60
+CGCPS V G G G +L+ DP+ + + + A +++PV+VK R+G D D ++
Sbjct: 95 NCGCPSKVVNGSGG-GATLLKDPELIYQGAKAMRAAVPSHLPVTVKVRLGWDSGDRKFEI 153
Query: 61 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 120
D + + + ++H R + A+ + ++ +R + NG
Sbjct: 154 ADAVQQAGA----SELVVHGR-------TKAQGYRAEHIDWQ-AIGEIRQRLTIPVIANG 201
Query: 121 GINTVDEVNAAL-RKGAHHVMVGRAAYQNP 149
I A + G VM+GR A P
Sbjct: 202 EILDWQSAQACMATSGCDAVMIGRGALNIP 231
>sp|Q8CU07|DUS_STAES Probable tRNA-dihydrouridine synthase OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=dus PE=3 SV=1
Length = 326
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
+ GCP VA G G L+L P+ E + A +PVSVK R+G D D +
Sbjct: 102 NMGCPVANVAKKGK-GSGLILRPETAAEIIQASKAG-GLPVSVKTRLGYYDIDEWRDWLK 159
Query: 63 FIYK--VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTL 118
+++ +++LS IH R A I +K LRD P+ T+
Sbjct: 160 HVFEQDIANLS------IHLRTRKEMSKVDAHWELIEAIK------TLRDEIAPNTLLTI 207
Query: 119 NGGI-NTVDEVNAALRKGAHHVMVGRAAYQNPW 150
NG I + + A + G +M+GR + NP+
Sbjct: 208 NGDIPDRQTGLELANKYGIDGIMIGRGIFHNPF 240
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,131,547
Number of Sequences: 539616
Number of extensions: 4729896
Number of successful extensions: 12195
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 11703
Number of HSP's gapped (non-prelim): 538
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)